id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-007041-rloey02j	Harel, Noam	Direct sequencing of RNA with MinION Nanopore: detecting mutations based on associations	2019-12-16		.txt	text/plain	7126	333	50	We sequenced virus populations in parallel using both MinION and Illumina, allowing us to corroborate the inferences of AssociVar. This then allowed us to directly infer relationships between mutations and to deduce the entire genome sequences of viral strains in the population. We then determined the population frequency of each mutation at passage 1 and passage 15 through whole genome deep sequencing as described below, using Illumina and MinION. After applying AssociVar to the data, we were able to identify five out of the six mutations appearing at a frequency above 10% in the Illumina results in p15A, and all eight positions within the p15B sample (Figure 4 , Supplementary Table S2 ). We applied AssociVar to sequencing data from an evolved population of phages where Illumina sequencing was available, allowing us to corroborate whether mutations we found based on analysis of the MinION data alone were indeed real.	./cache/cord-007041-rloey02j.txt	./txt/cord-007041-rloey02j.txt