id	sid	tid	token	lemma	pos
cord-324395-v5uiuhih	1	1	key	key	JJ
cord-324395-v5uiuhih	2	1	:	:	:
cord-324395-v5uiuhih	2	2	cord-324395-v5uiuhih	cord-324395-v5uiuhih	NNP
cord-324395-v5uiuhih	2	3	authors	author	NNS
cord-324395-v5uiuhih	2	4	:	:	:
cord-324395-v5uiuhih	2	5	Lemmin	Lemmin	NNP
cord-324395-v5uiuhih	2	6	,	,	,
cord-324395-v5uiuhih	2	7	Thomas	Thomas	NNP
cord-324395-v5uiuhih	2	8	;	;	:
cord-324395-v5uiuhih	2	9	Soto	Soto	NNP
cord-324395-v5uiuhih	2	10	,	,	,
cord-324395-v5uiuhih	2	11	Cinque	Cinque	NNP
cord-324395-v5uiuhih	2	12	title	title	NN
cord-324395-v5uiuhih	2	13	:	:	:
cord-324395-v5uiuhih	3	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	3	2	:	:	:
cord-324395-v5uiuhih	3	3	a	a	DT
cord-324395-v5uiuhih	3	4	Python	Python	NNP
cord-324395-v5uiuhih	3	5	framework	framework	NN
cord-324395-v5uiuhih	3	6	for	for	IN
cord-324395-v5uiuhih	3	7	the	the	DT
cord-324395-v5uiuhih	3	8	rapid	rapid	JJ
cord-324395-v5uiuhih	3	9	modeling	modeling	NN
cord-324395-v5uiuhih	3	10	of	of	IN
cord-324395-v5uiuhih	3	11	glycans	glycan	NNS
cord-324395-v5uiuhih	3	12	date	date	NN
cord-324395-v5uiuhih	3	13	:	:	:
cord-324395-v5uiuhih	3	14	2019	2019	CD
cord-324395-v5uiuhih	3	15	-	-	SYM
cord-324395-v5uiuhih	3	16	10	10	CD
cord-324395-v5uiuhih	3	17	-	-	SYM
cord-324395-v5uiuhih	3	18	22	22	CD
cord-324395-v5uiuhih	3	19	journal	journal	NN
cord-324395-v5uiuhih	3	20	:	:	:
cord-324395-v5uiuhih	4	1	BMC	BMC	NNP
cord-324395-v5uiuhih	4	2	Bioinformatics	Bioinformatics	NNP
cord-324395-v5uiuhih	4	3	DOI	DOI	NNP
cord-324395-v5uiuhih	4	4	:	:	:
cord-324395-v5uiuhih	4	5	10.1186	10.1186	CD
cord-324395-v5uiuhih	4	6	/	/	SYM
cord-324395-v5uiuhih	4	7	s12859	s12859	NN
cord-324395-v5uiuhih	4	8	-	-	HYPH
cord-324395-v5uiuhih	4	9	019	019	CD
cord-324395-v5uiuhih	4	10	-	-	HYPH
cord-324395-v5uiuhih	4	11	3097	3097	CD
cord-324395-v5uiuhih	4	12	-	-	SYM
cord-324395-v5uiuhih	4	13	6	6	CD
cord-324395-v5uiuhih	4	14	sha	sha	NN
cord-324395-v5uiuhih	4	15	:	:	:
cord-324395-v5uiuhih	5	1	d7528a14c4876dbffb163105631a9dea22f20f83	d7528a14c4876dbffb163105631a9dea22f20f83	NNP
cord-324395-v5uiuhih	5	2	doc_id	doc_id	NNP
cord-324395-v5uiuhih	5	3	:	:	:
cord-324395-v5uiuhih	5	4	324395	324395	CD
cord-324395-v5uiuhih	5	5	cord_uid	cord_uid	NNS
cord-324395-v5uiuhih	5	6	:	:	:
cord-324395-v5uiuhih	6	1	v5uiuhih	v5uiuhih	NNP
cord-324395-v5uiuhih	6	2	BACKGROUND	BACKGROUND	NNP
cord-324395-v5uiuhih	6	3	:	:	:
cord-324395-v5uiuhih	7	1	Carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	7	2	are	be	VBP
cord-324395-v5uiuhih	7	3	a	a	DT
cord-324395-v5uiuhih	7	4	class	class	NN
cord-324395-v5uiuhih	7	5	of	of	IN
cord-324395-v5uiuhih	7	6	large	large	JJ
cord-324395-v5uiuhih	7	7	and	and	CC
cord-324395-v5uiuhih	7	8	diverse	diverse	JJ
cord-324395-v5uiuhih	7	9	biomolecules	biomolecule	NNS
cord-324395-v5uiuhih	7	10	,	,	,
cord-324395-v5uiuhih	7	11	ranging	range	VBG
cord-324395-v5uiuhih	7	12	from	from	IN
cord-324395-v5uiuhih	7	13	a	a	DT
cord-324395-v5uiuhih	7	14	simple	simple	JJ
cord-324395-v5uiuhih	7	15	monosaccharide	monosaccharide	NN
cord-324395-v5uiuhih	7	16	to	to	IN
cord-324395-v5uiuhih	7	17	large	large	JJ
cord-324395-v5uiuhih	7	18	multi	multi	JJ
cord-324395-v5uiuhih	7	19	-	-	JJ
cord-324395-v5uiuhih	7	20	branching	branching	JJ
cord-324395-v5uiuhih	7	21	glycan	glycan	NN
cord-324395-v5uiuhih	7	22	structures	structure	NNS
cord-324395-v5uiuhih	7	23	.	.	.
cord-324395-v5uiuhih	8	1	The	the	DT
cord-324395-v5uiuhih	8	2	covalent	covalent	JJ
cord-324395-v5uiuhih	8	3	linkage	linkage	NN
cord-324395-v5uiuhih	8	4	of	of	IN
cord-324395-v5uiuhih	8	5	a	a	DT
cord-324395-v5uiuhih	8	6	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	8	7	to	to	IN
cord-324395-v5uiuhih	8	8	the	the	DT
cord-324395-v5uiuhih	8	9	nitrogen	nitrogen	NN
cord-324395-v5uiuhih	8	10	atom	atom	NN
cord-324395-v5uiuhih	8	11	of	of	IN
cord-324395-v5uiuhih	8	12	an	an	DT
cord-324395-v5uiuhih	8	13	asparagine	asparagine	NN
cord-324395-v5uiuhih	8	14	,	,	,
cord-324395-v5uiuhih	8	15	a	a	DT
cord-324395-v5uiuhih	8	16	process	process	NN
cord-324395-v5uiuhih	8	17	referred	refer	VBN
cord-324395-v5uiuhih	8	18	to	to	IN
cord-324395-v5uiuhih	8	19	as	as	IN
cord-324395-v5uiuhih	8	20	N	n	CD
cord-324395-v5uiuhih	8	21	-	-	HYPH
cord-324395-v5uiuhih	8	22	linked	link	VBN
cord-324395-v5uiuhih	8	23	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	8	24	,	,	,
cord-324395-v5uiuhih	8	25	plays	play	VBZ
cord-324395-v5uiuhih	8	26	an	an	DT
cord-324395-v5uiuhih	8	27	important	important	JJ
cord-324395-v5uiuhih	8	28	role	role	NN
cord-324395-v5uiuhih	8	29	in	in	IN
cord-324395-v5uiuhih	8	30	the	the	DT
cord-324395-v5uiuhih	8	31	physiology	physiology	NN
cord-324395-v5uiuhih	8	32	of	of	IN
cord-324395-v5uiuhih	8	33	many	many	JJ
cord-324395-v5uiuhih	8	34	living	live	VBG
cord-324395-v5uiuhih	8	35	organisms	organism	NNS
cord-324395-v5uiuhih	8	36	.	.	.
cord-324395-v5uiuhih	9	1	Most	Most	JJS
cord-324395-v5uiuhih	9	2	software	software	NN
cord-324395-v5uiuhih	9	3	for	for	IN
cord-324395-v5uiuhih	9	4	glycan	glycan	NN
cord-324395-v5uiuhih	9	5	modeling	modeling	NN
cord-324395-v5uiuhih	9	6	on	on	IN
cord-324395-v5uiuhih	9	7	a	a	DT
cord-324395-v5uiuhih	9	8	personal	personal	JJ
cord-324395-v5uiuhih	9	9	desktop	desktop	NN
cord-324395-v5uiuhih	9	10	computer	computer	NN
cord-324395-v5uiuhih	9	11	requires	require	VBZ
cord-324395-v5uiuhih	9	12	knowledge	knowledge	NN
cord-324395-v5uiuhih	9	13	of	of	IN
cord-324395-v5uiuhih	9	14	molecular	molecular	JJ
cord-324395-v5uiuhih	9	15	dynamics	dynamic	NNS
cord-324395-v5uiuhih	9	16	to	to	TO
cord-324395-v5uiuhih	9	17	interface	interface	VB
cord-324395-v5uiuhih	9	18	with	with	IN
cord-324395-v5uiuhih	9	19	specialized	specialized	JJ
cord-324395-v5uiuhih	9	20	programs	program	NNS
cord-324395-v5uiuhih	9	21	such	such	JJ
cord-324395-v5uiuhih	9	22	as	as	IN
cord-324395-v5uiuhih	9	23	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	9	24	or	or	CC
cord-324395-v5uiuhih	9	25	AMBER	AMBER	NNP
cord-324395-v5uiuhih	9	26	.	.	.
cord-324395-v5uiuhih	10	1	There	there	EX
cord-324395-v5uiuhih	10	2	are	be	VBP
cord-324395-v5uiuhih	10	3	a	a	DT
cord-324395-v5uiuhih	10	4	number	number	NN
cord-324395-v5uiuhih	10	5	of	of	IN
cord-324395-v5uiuhih	10	6	popular	popular	JJ
cord-324395-v5uiuhih	10	7	web	web	NN
cord-324395-v5uiuhih	10	8	-	-	HYPH
cord-324395-v5uiuhih	10	9	based	base	VBN
cord-324395-v5uiuhih	10	10	tools	tool	NNS
cord-324395-v5uiuhih	10	11	that	that	WDT
cord-324395-v5uiuhih	10	12	are	be	VBP
cord-324395-v5uiuhih	10	13	available	available	JJ
cord-324395-v5uiuhih	10	14	for	for	IN
cord-324395-v5uiuhih	10	15	modeling	model	VBG
cord-324395-v5uiuhih	10	16	glycans	glycan	NNS
cord-324395-v5uiuhih	10	17	(	(	-LRB-
cord-324395-v5uiuhih	10	18	e.g.	e.g.	RB
cord-324395-v5uiuhih	10	19	,	,	,
cord-324395-v5uiuhih	10	20	GLYCAM	GLYCAM	NNP
cord-324395-v5uiuhih	10	21	-	-	HYPH
cord-324395-v5uiuhih	10	22	WEB	WEB	NNP
cord-324395-v5uiuhih	10	23	(	(	-LRB-
cord-324395-v5uiuhih	10	24	http://https://dev.glycam.org	http://https://dev.glycam.org	NNS
cord-324395-v5uiuhih	10	25	/	/	SYM
cord-324395-v5uiuhih	10	26	gp/	gp/	JJ
cord-324395-v5uiuhih	10	27	)	)	-RRB-
cord-324395-v5uiuhih	10	28	or	or	CC
cord-324395-v5uiuhih	10	29	Glycosciences.db	glycosciences.db	ADD
cord-324395-v5uiuhih	11	1	(	(	-LRB-
cord-324395-v5uiuhih	11	2	http://www.glycosciences.de/	http://www.glycosciences.de/	NNP
cord-324395-v5uiuhih	11	3	)	)	-RRB-
cord-324395-v5uiuhih	11	4	)	)	-RRB-
cord-324395-v5uiuhih	11	5	.	.	.
cord-324395-v5uiuhih	12	1	However	however	RB
cord-324395-v5uiuhih	12	2	,	,	,
cord-324395-v5uiuhih	12	3	these	these	DT
cord-324395-v5uiuhih	12	4	web	web	NN
cord-324395-v5uiuhih	12	5	-	-	HYPH
cord-324395-v5uiuhih	12	6	based	base	VBN
cord-324395-v5uiuhih	12	7	tools	tool	NNS
cord-324395-v5uiuhih	12	8	are	be	VBP
cord-324395-v5uiuhih	12	9	generally	generally	RB
cord-324395-v5uiuhih	12	10	limited	limit	VBN
cord-324395-v5uiuhih	12	11	to	to	IN
cord-324395-v5uiuhih	12	12	a	a	DT
cord-324395-v5uiuhih	12	13	few	few	JJ
cord-324395-v5uiuhih	12	14	canonical	canonical	JJ
cord-324395-v5uiuhih	12	15	glycan	glycan	NN
cord-324395-v5uiuhih	12	16	conformations	conformation	NNS
cord-324395-v5uiuhih	12	17	and	and	CC
cord-324395-v5uiuhih	12	18	do	do	VBP
cord-324395-v5uiuhih	12	19	not	not	RB
cord-324395-v5uiuhih	12	20	allow	allow	VB
cord-324395-v5uiuhih	12	21	the	the	DT
cord-324395-v5uiuhih	12	22	user	user	NN
cord-324395-v5uiuhih	12	23	to	to	TO
cord-324395-v5uiuhih	12	24	incorporate	incorporate	VB
cord-324395-v5uiuhih	12	25	glycan	glycan	NN
cord-324395-v5uiuhih	12	26	modeling	modeling	NN
cord-324395-v5uiuhih	12	27	into	into	IN
cord-324395-v5uiuhih	12	28	their	-PRON-	PRP$
cord-324395-v5uiuhih	12	29	protein	protein	NN
cord-324395-v5uiuhih	12	30	structure	structure	NN
cord-324395-v5uiuhih	12	31	modeling	modeling	NN
cord-324395-v5uiuhih	12	32	workflow	workflow	NN
cord-324395-v5uiuhih	12	33	.	.	.
cord-324395-v5uiuhih	13	1	RESULTS	result	NNS
cord-324395-v5uiuhih	13	2	:	:	:
cord-324395-v5uiuhih	14	1	Here	here	RB
cord-324395-v5uiuhih	14	2	,	,	,
cord-324395-v5uiuhih	14	3	we	-PRON-	PRP
cord-324395-v5uiuhih	14	4	present	present	VBP
cord-324395-v5uiuhih	14	5	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	14	6	,	,	,
cord-324395-v5uiuhih	14	7	a	a	DT
cord-324395-v5uiuhih	14	8	Python	Python	NNP
cord-324395-v5uiuhih	14	9	framework	framework	NN
cord-324395-v5uiuhih	14	10	for	for	IN
cord-324395-v5uiuhih	14	11	the	the	DT
cord-324395-v5uiuhih	14	12	identification	identification	NN
cord-324395-v5uiuhih	14	13	,	,	,
cord-324395-v5uiuhih	14	14	modeling	modeling	NN
cord-324395-v5uiuhih	14	15	and	and	CC
cord-324395-v5uiuhih	14	16	modification	modification	NN
cord-324395-v5uiuhih	14	17	of	of	IN
cord-324395-v5uiuhih	14	18	glycans	glycan	NNS
cord-324395-v5uiuhih	14	19	in	in	IN
cord-324395-v5uiuhih	14	20	protein	protein	NN
cord-324395-v5uiuhih	14	21	structure	structure	NN
cord-324395-v5uiuhih	14	22	that	that	WDT
cord-324395-v5uiuhih	14	23	can	can	MD
cord-324395-v5uiuhih	14	24	be	be	VB
cord-324395-v5uiuhih	14	25	used	use	VBN
cord-324395-v5uiuhih	14	26	directly	directly	RB
cord-324395-v5uiuhih	14	27	in	in	IN
cord-324395-v5uiuhih	14	28	a	a	DT
cord-324395-v5uiuhih	14	29	Python	Python	NNP
cord-324395-v5uiuhih	14	30	script	script	NN
cord-324395-v5uiuhih	14	31	through	through	IN
cord-324395-v5uiuhih	14	32	its	-PRON-	PRP$
cord-324395-v5uiuhih	14	33	application	application	NN
cord-324395-v5uiuhih	14	34	programming	programming	NN
cord-324395-v5uiuhih	14	35	interface	interface	NN
cord-324395-v5uiuhih	14	36	(	(	-LRB-
cord-324395-v5uiuhih	14	37	API	API	NNP
cord-324395-v5uiuhih	14	38	)	)	-RRB-
cord-324395-v5uiuhih	14	39	or	or	CC
cord-324395-v5uiuhih	14	40	through	through	IN
cord-324395-v5uiuhih	14	41	its	-PRON-	PRP$
cord-324395-v5uiuhih	14	42	graphical	graphical	JJ
cord-324395-v5uiuhih	14	43	user	user	NN
cord-324395-v5uiuhih	14	44	interface	interface	NN
cord-324395-v5uiuhih	14	45	(	(	-LRB-
cord-324395-v5uiuhih	14	46	GUI	GUI	NNP
cord-324395-v5uiuhih	14	47	)	)	-RRB-
cord-324395-v5uiuhih	14	48	.	.	.
cord-324395-v5uiuhih	15	1	The	the	DT
cord-324395-v5uiuhih	15	2	GUI	GUI	NNP
cord-324395-v5uiuhih	15	3	provides	provide	VBZ
cord-324395-v5uiuhih	15	4	a	a	DT
cord-324395-v5uiuhih	15	5	straightforward	straightforward	JJ
cord-324395-v5uiuhih	15	6	two	two	CD
cord-324395-v5uiuhih	15	7	-	-	HYPH
cord-324395-v5uiuhih	15	8	dimensional	dimensional	JJ
cord-324395-v5uiuhih	15	9	(	(	-LRB-
cord-324395-v5uiuhih	15	10	2D	2D	NNP
cord-324395-v5uiuhih	15	11	)	)	-RRB-
cord-324395-v5uiuhih	15	12	rendering	rendering	NN
cord-324395-v5uiuhih	15	13	of	of	IN
cord-324395-v5uiuhih	15	14	a	a	DT
cord-324395-v5uiuhih	15	15	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	15	16	that	that	WDT
cord-324395-v5uiuhih	15	17	allows	allow	VBZ
cord-324395-v5uiuhih	15	18	for	for	IN
cord-324395-v5uiuhih	15	19	a	a	DT
cord-324395-v5uiuhih	15	20	quick	quick	JJ
cord-324395-v5uiuhih	15	21	visual	visual	JJ
cord-324395-v5uiuhih	15	22	inspection	inspection	NN
cord-324395-v5uiuhih	15	23	of	of	IN
cord-324395-v5uiuhih	15	24	the	the	DT
cord-324395-v5uiuhih	15	25	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	15	26	state	state	NN
cord-324395-v5uiuhih	15	27	of	of	IN
cord-324395-v5uiuhih	15	28	all	all	PDT
cord-324395-v5uiuhih	15	29	the	the	DT
cord-324395-v5uiuhih	15	30	sequons	sequon	NNS
cord-324395-v5uiuhih	15	31	on	on	IN
cord-324395-v5uiuhih	15	32	a	a	DT
cord-324395-v5uiuhih	15	33	protein	protein	NN
cord-324395-v5uiuhih	15	34	structure	structure	NN
cord-324395-v5uiuhih	15	35	.	.	.
cord-324395-v5uiuhih	16	1	Modeled	model	VBN
cord-324395-v5uiuhih	16	2	glycans	glycan	NNS
cord-324395-v5uiuhih	16	3	can	can	MD
cord-324395-v5uiuhih	16	4	be	be	VB
cord-324395-v5uiuhih	16	5	further	further	RB
cord-324395-v5uiuhih	16	6	refined	refine	VBN
cord-324395-v5uiuhih	16	7	by	by	IN
cord-324395-v5uiuhih	16	8	a	a	DT
cord-324395-v5uiuhih	16	9	genetic	genetic	JJ
cord-324395-v5uiuhih	16	10	algorithm	algorithm	NN
cord-324395-v5uiuhih	16	11	for	for	IN
cord-324395-v5uiuhih	16	12	removing	remove	VBG
cord-324395-v5uiuhih	16	13	clashes	clash	NNS
cord-324395-v5uiuhih	16	14	and	and	CC
cord-324395-v5uiuhih	16	15	sampling	sampling	NN
cord-324395-v5uiuhih	16	16	alternative	alternative	JJ
cord-324395-v5uiuhih	16	17	conformations	conformation	NNS
cord-324395-v5uiuhih	16	18	.	.	.
cord-324395-v5uiuhih	17	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	17	2	can	can	MD
cord-324395-v5uiuhih	17	3	also	also	RB
cord-324395-v5uiuhih	17	4	identify	identify	VB
cord-324395-v5uiuhih	17	5	specific	specific	JJ
cord-324395-v5uiuhih	17	6	three	three	CD
cord-324395-v5uiuhih	17	7	-	-	HYPH
cord-324395-v5uiuhih	17	8	dimensional	dimensional	JJ
cord-324395-v5uiuhih	17	9	(	(	-LRB-
cord-324395-v5uiuhih	17	10	3D	3D	NNP
cord-324395-v5uiuhih	17	11	)	)	-RRB-
cord-324395-v5uiuhih	17	12	glycans	glycan	NNS
cord-324395-v5uiuhih	17	13	on	on	IN
cord-324395-v5uiuhih	17	14	a	a	DT
cord-324395-v5uiuhih	17	15	protein	protein	NN
cord-324395-v5uiuhih	17	16	structure	structure	NN
cord-324395-v5uiuhih	17	17	using	use	VBG
cord-324395-v5uiuhih	17	18	a	a	DT
cord-324395-v5uiuhih	17	19	library	library	NN
cord-324395-v5uiuhih	17	20	of	of	IN
cord-324395-v5uiuhih	17	21	predefined	predefined	JJ
cord-324395-v5uiuhih	17	22	templates	template	NNS
cord-324395-v5uiuhih	17	23	.	.	.
cord-324395-v5uiuhih	18	1	CONCLUSIONS	conclusion	NNS
cord-324395-v5uiuhih	18	2	:	:	:
cord-324395-v5uiuhih	19	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	19	2	was	be	VBD
cord-324395-v5uiuhih	19	3	used	use	VBN
cord-324395-v5uiuhih	19	4	to	to	TO
cord-324395-v5uiuhih	19	5	generate	generate	VB
cord-324395-v5uiuhih	19	6	models	model	NNS
cord-324395-v5uiuhih	19	7	of	of	IN
cord-324395-v5uiuhih	19	8	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	19	9	protein	protein	NN
cord-324395-v5uiuhih	19	10	without	without	IN
cord-324395-v5uiuhih	19	11	steric	steric	JJ
cord-324395-v5uiuhih	19	12	clashes	clash	NNS
cord-324395-v5uiuhih	19	13	.	.	.
cord-324395-v5uiuhih	20	1	Since	since	IN
cord-324395-v5uiuhih	20	2	the	the	DT
cord-324395-v5uiuhih	20	3	molecular	molecular	JJ
cord-324395-v5uiuhih	20	4	topology	topology	NN
cord-324395-v5uiuhih	20	5	is	be	VBZ
cord-324395-v5uiuhih	20	6	based	base	VBN
cord-324395-v5uiuhih	20	7	on	on	IN
cord-324395-v5uiuhih	20	8	the	the	DT
cord-324395-v5uiuhih	20	9	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	20	10	force	force	NN
cord-324395-v5uiuhih	20	11	field	field	NN
cord-324395-v5uiuhih	20	12	,	,	,
cord-324395-v5uiuhih	20	13	new	new	JJ
cord-324395-v5uiuhih	20	14	complex	complex	JJ
cord-324395-v5uiuhih	20	15	sugar	sugar	NN
cord-324395-v5uiuhih	20	16	moieties	moiety	NNS
cord-324395-v5uiuhih	20	17	can	can	MD
cord-324395-v5uiuhih	20	18	be	be	VB
cord-324395-v5uiuhih	20	19	generated	generate	VBN
cord-324395-v5uiuhih	20	20	without	without	IN
cord-324395-v5uiuhih	20	21	modifying	modify	VBG
cord-324395-v5uiuhih	20	22	the	the	DT
cord-324395-v5uiuhih	20	23	internals	internal	NNS
cord-324395-v5uiuhih	20	24	of	of	IN
cord-324395-v5uiuhih	20	25	the	the	DT
cord-324395-v5uiuhih	20	26	code	code	NN
cord-324395-v5uiuhih	20	27	.	.	.
cord-324395-v5uiuhih	21	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	21	2	provides	provide	VBZ
cord-324395-v5uiuhih	21	3	more	more	JJR
cord-324395-v5uiuhih	21	4	functionality	functionality	NN
cord-324395-v5uiuhih	21	5	for	for	IN
cord-324395-v5uiuhih	21	6	analyzing	analyze	VBG
cord-324395-v5uiuhih	21	7	and	and	CC
cord-324395-v5uiuhih	21	8	modeling	model	VBG
cord-324395-v5uiuhih	21	9	glycans	glycan	NNS
cord-324395-v5uiuhih	21	10	than	than	IN
cord-324395-v5uiuhih	21	11	any	any	DT
cord-324395-v5uiuhih	21	12	other	other	JJ
cord-324395-v5uiuhih	21	13	available	available	JJ
cord-324395-v5uiuhih	21	14	software	software	NN
cord-324395-v5uiuhih	21	15	or	or	CC
cord-324395-v5uiuhih	21	16	webserver	webserver	NN
cord-324395-v5uiuhih	21	17	at	at	IN
cord-324395-v5uiuhih	21	18	present	present	NN
cord-324395-v5uiuhih	21	19	.	.	.
cord-324395-v5uiuhih	22	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	22	2	will	will	MD
cord-324395-v5uiuhih	22	3	be	be	VB
cord-324395-v5uiuhih	22	4	a	a	DT
cord-324395-v5uiuhih	22	5	valuable	valuable	JJ
cord-324395-v5uiuhih	22	6	tool	tool	NN
cord-324395-v5uiuhih	22	7	for	for	IN
cord-324395-v5uiuhih	22	8	the	the	DT
cord-324395-v5uiuhih	22	9	glycoinformatics	glycoinformatic	NNS
cord-324395-v5uiuhih	22	10	and	and	CC
cord-324395-v5uiuhih	22	11	biomolecular	biomolecular	JJ
cord-324395-v5uiuhih	22	12	modeling	modeling	NN
cord-324395-v5uiuhih	22	13	communities	community	NNS
cord-324395-v5uiuhih	22	14	.	.	.
cord-324395-v5uiuhih	23	1	Glycosylation	glycosylation	NN
cord-324395-v5uiuhih	23	2	is	be	VBZ
cord-324395-v5uiuhih	23	3	an	an	DT
cord-324395-v5uiuhih	23	4	important	important	JJ
cord-324395-v5uiuhih	23	5	post	post	JJ
cord-324395-v5uiuhih	23	6	-	-	JJ
cord-324395-v5uiuhih	23	7	translational	translational	JJ
cord-324395-v5uiuhih	23	8	modification	modification	NN
cord-324395-v5uiuhih	23	9	of	of	IN
cord-324395-v5uiuhih	23	10	proteins	protein	NNS
cord-324395-v5uiuhih	23	11	,	,	,
cord-324395-v5uiuhih	23	12	where	where	WRB
cord-324395-v5uiuhih	23	13	a	a	DT
cord-324395-v5uiuhih	23	14	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	23	15	is	be	VBZ
cord-324395-v5uiuhih	23	16	covalently	covalently	RB
cord-324395-v5uiuhih	23	17	attached	attach	VBN
cord-324395-v5uiuhih	23	18	by	by	IN
cord-324395-v5uiuhih	23	19	an	an	DT
cord-324395-v5uiuhih	23	20	enzyme	enzyme	NN
cord-324395-v5uiuhih	23	21	to	to	IN
cord-324395-v5uiuhih	23	22	specific	specific	JJ
cord-324395-v5uiuhih	23	23	amino	amino	JJ
cord-324395-v5uiuhih	23	24	acids	acid	NNS
cord-324395-v5uiuhih	23	25	motifs	motif	NNS
cord-324395-v5uiuhih	23	26	known	know	VBN
cord-324395-v5uiuhih	23	27	as	as	IN
cord-324395-v5uiuhih	23	28	sequons	sequon	NNS
cord-324395-v5uiuhih	23	29	space	space	NN
cord-324395-v5uiuhih	23	30	[	[	-LRB-
cord-324395-v5uiuhih	23	31	1	1	CD
cord-324395-v5uiuhih	23	32	]	]	-RRB-
cord-324395-v5uiuhih	23	33	[	[	-LRB-
cord-324395-v5uiuhih	23	34	2	2	CD
cord-324395-v5uiuhih	23	35	]	]	-RRB-
cord-324395-v5uiuhih	23	36	[	[	-LRB-
cord-324395-v5uiuhih	23	37	3	3	CD
cord-324395-v5uiuhih	23	38	]	]	-RRB-
cord-324395-v5uiuhih	23	39	[	[	-LRB-
cord-324395-v5uiuhih	23	40	4	4	CD
cord-324395-v5uiuhih	23	41	]	]	-RRB-
cord-324395-v5uiuhih	23	42	.	.	.
cord-324395-v5uiuhih	24	1	Glycosylation	Glycosylation	NNP
cord-324395-v5uiuhih	24	2	has	have	VBZ
cord-324395-v5uiuhih	24	3	several	several	JJ
cord-324395-v5uiuhih	24	4	principal	principal	JJ
cord-324395-v5uiuhih	24	5	structural	structural	JJ
cord-324395-v5uiuhih	24	6	and	and	CC
cord-324395-v5uiuhih	24	7	functional	functional	JJ
cord-324395-v5uiuhih	24	8	roles	role	NNS
cord-324395-v5uiuhih	24	9	in	in	IN
cord-324395-v5uiuhih	24	10	biology	biology	NN
cord-324395-v5uiuhih	24	11	,	,	,
cord-324395-v5uiuhih	24	12	that	that	WDT
cord-324395-v5uiuhih	24	13	include	include	VBP
cord-324395-v5uiuhih	24	14	protein	protein	NN
cord-324395-v5uiuhih	24	15	folding	fold	VBG
cord-324395-v5uiuhih	24	16	[	[	-LRB-
cord-324395-v5uiuhih	24	17	5	5	CD
cord-324395-v5uiuhih	24	18	]	]	-RRB-
cord-324395-v5uiuhih	24	19	,	,	,
cord-324395-v5uiuhih	24	20	tissue	tissue	NN
cord-324395-v5uiuhih	24	21	repair	repair	NN
cord-324395-v5uiuhih	24	22	[	[	-LRB-
cord-324395-v5uiuhih	24	23	6	6	CD
cord-324395-v5uiuhih	24	24	]	]	-RRB-
cord-324395-v5uiuhih	24	25	,	,	,
cord-324395-v5uiuhih	24	26	and	and	CC
cord-324395-v5uiuhih	24	27	cell	cell	NN
cord-324395-v5uiuhih	24	28	migration	migration	NN
cord-324395-v5uiuhih	24	29	[	[	-LRB-
cord-324395-v5uiuhih	24	30	7	7	CD
cord-324395-v5uiuhih	24	31	]	]	-RRB-
cord-324395-v5uiuhih	24	32	.	.	.
cord-324395-v5uiuhih	25	1	In	in	IN
cord-324395-v5uiuhih	25	2	eukaryotes	eukaryote	NNS
cord-324395-v5uiuhih	25	3	,	,	,
cord-324395-v5uiuhih	25	4	nearly	nearly	RB
cord-324395-v5uiuhih	25	5	70	70	CD
cord-324395-v5uiuhih	25	6	%	%	NN
cord-324395-v5uiuhih	25	7	of	of	IN
cord-324395-v5uiuhih	25	8	the	the	DT
cord-324395-v5uiuhih	25	9	proteome	proteome	NN
cord-324395-v5uiuhih	25	10	is	be	VBZ
cord-324395-v5uiuhih	25	11	believed	believe	VBN
cord-324395-v5uiuhih	25	12	to	to	TO
cord-324395-v5uiuhih	25	13	be	be	VB
cord-324395-v5uiuhih	25	14	glycosylated	glycosylate	VBN
cord-324395-v5uiuhih	25	15	[	[	-LRB-
cord-324395-v5uiuhih	25	16	8	8	CD
cord-324395-v5uiuhih	25	17	]	]	-RRB-
cord-324395-v5uiuhih	25	18	.	.	.
cord-324395-v5uiuhih	26	1	More	more	RBR
cord-324395-v5uiuhih	26	2	recently	recently	RB
cord-324395-v5uiuhih	26	3	,	,	,
cord-324395-v5uiuhih	26	4	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	26	5	has	have	VBZ
cord-324395-v5uiuhih	26	6	been	be	VBN
cord-324395-v5uiuhih	26	7	observed	observe	VBN
cord-324395-v5uiuhih	26	8	in	in	IN
cord-324395-v5uiuhih	26	9	bacteria	bacteria	NNS
cord-324395-v5uiuhih	26	10	where	where	WRB
cord-324395-v5uiuhih	26	11	it	-PRON-	PRP
cord-324395-v5uiuhih	26	12	has	have	VBZ
cord-324395-v5uiuhih	26	13	been	be	VBN
cord-324395-v5uiuhih	26	14	associated	associate	VBN
cord-324395-v5uiuhih	26	15	with	with	IN
cord-324395-v5uiuhih	26	16	their	-PRON-	PRP$
cord-324395-v5uiuhih	26	17	virulence	virulence	NN
cord-324395-v5uiuhih	26	18	and	and	CC
cord-324395-v5uiuhih	26	19	the	the	DT
cord-324395-v5uiuhih	26	20	formation	formation	NN
cord-324395-v5uiuhih	26	21	of	of	IN
cord-324395-v5uiuhih	26	22	biofilms	biofilm	NNS
cord-324395-v5uiuhih	26	23	[	[	-LRB-
cord-324395-v5uiuhih	26	24	9	9	CD
cord-324395-v5uiuhih	26	25	]	]	-RRB-
cord-324395-v5uiuhih	26	26	.	.	.
cord-324395-v5uiuhih	27	1	For	for	IN
cord-324395-v5uiuhih	27	2	viruses	virus	NNS
cord-324395-v5uiuhih	27	3	,	,	,
cord-324395-v5uiuhih	27	4	such	such	JJ
cord-324395-v5uiuhih	27	5	as	as	IN
cord-324395-v5uiuhih	27	6	HIV	HIV	NNP
cord-324395-v5uiuhih	27	7	and	and	CC
cord-324395-v5uiuhih	27	8	Influenza	Influenza	NNP
cord-324395-v5uiuhih	27	9	,	,	,
cord-324395-v5uiuhih	27	10	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	27	11	allows	allow	VBZ
cord-324395-v5uiuhih	27	12	for	for	IN
cord-324395-v5uiuhih	27	13	evasion	evasion	NN
cord-324395-v5uiuhih	27	14	of	of	IN
cord-324395-v5uiuhih	27	15	the	the	DT
cord-324395-v5uiuhih	27	16	host	host	NN
cord-324395-v5uiuhih	27	17	's	's	POS
cord-324395-v5uiuhih	27	18	immune	immune	JJ
cord-324395-v5uiuhih	27	19	system	system	NN
cord-324395-v5uiuhih	27	20	[	[	-LRB-
cord-324395-v5uiuhih	27	21	10	10	CD
cord-324395-v5uiuhih	27	22	,	,	,
cord-324395-v5uiuhih	27	23	11	11	CD
cord-324395-v5uiuhih	27	24	]	]	-RRB-
cord-324395-v5uiuhih	27	25	.	.	.
cord-324395-v5uiuhih	28	1	Thus	thus	RB
cord-324395-v5uiuhih	28	2	,	,	,
cord-324395-v5uiuhih	28	3	determining	determine	VBG
cord-324395-v5uiuhih	28	4	the	the	DT
cord-324395-v5uiuhih	28	5	role	role	NN
cord-324395-v5uiuhih	28	6	of	of	IN
cord-324395-v5uiuhih	28	7	glycan	glycan	NN
cord-324395-v5uiuhih	28	8	structure	structure	NN
cord-324395-v5uiuhih	28	9	in	in	IN
cord-324395-v5uiuhih	28	10	biology	biology	NN
cord-324395-v5uiuhih	28	11	is	be	VBZ
cord-324395-v5uiuhih	28	12	essential	essential	JJ
cord-324395-v5uiuhih	28	13	in	in	IN
cord-324395-v5uiuhih	28	14	order	order	NN
cord-324395-v5uiuhih	28	15	to	to	TO
cord-324395-v5uiuhih	28	16	understand	understand	VB
cord-324395-v5uiuhih	28	17	pathogenesis	pathogenesis	NN
cord-324395-v5uiuhih	28	18	.	.	.
cord-324395-v5uiuhih	29	1	The	the	DT
cord-324395-v5uiuhih	29	2	diverse	diverse	JJ
cord-324395-v5uiuhih	29	3	and	and	CC
cord-324395-v5uiuhih	29	4	dynamic	dynamic	JJ
cord-324395-v5uiuhih	29	5	nature	nature	NN
cord-324395-v5uiuhih	29	6	of	of	IN
cord-324395-v5uiuhih	29	7	glycan	glycan	NN
cord-324395-v5uiuhih	29	8	structures	structure	NNS
cord-324395-v5uiuhih	29	9	makes	make	VBZ
cord-324395-v5uiuhih	29	10	it	-PRON-	PRP
cord-324395-v5uiuhih	29	11	difficult	difficult	JJ
cord-324395-v5uiuhih	29	12	to	to	TO
cord-324395-v5uiuhih	29	13	resolve	resolve	VB
cord-324395-v5uiuhih	29	14	their	-PRON-	PRP$
cord-324395-v5uiuhih	29	15	structure	structure	NN
cord-324395-v5uiuhih	29	16	experimentally	experimentally	RB
cord-324395-v5uiuhih	29	17	through	through	IN
cord-324395-v5uiuhih	29	18	traditional	traditional	JJ
cord-324395-v5uiuhih	29	19	approaches	approach	NNS
cord-324395-v5uiuhih	29	20	(	(	-LRB-
cord-324395-v5uiuhih	29	21	e.g.	e.g.	RB
cord-324395-v5uiuhih	29	22	,	,	,
cord-324395-v5uiuhih	29	23	x	x	NN
cord-324395-v5uiuhih	29	24	-	-	NN
cord-324395-v5uiuhih	29	25	ray	ray	NN
cord-324395-v5uiuhih	29	26	crystallography	crystallography	NN
cord-324395-v5uiuhih	29	27	,	,	,
cord-324395-v5uiuhih	29	28	cryogenic	cryogenic	JJ
cord-324395-v5uiuhih	29	29	electron	electron	NN
cord-324395-v5uiuhih	29	30	microscopy	microscopy	NN
cord-324395-v5uiuhih	29	31	(	(	-LRB-
cord-324395-v5uiuhih	29	32	cryo	cryo	NN
cord-324395-v5uiuhih	29	33	-	-	HYPH
cord-324395-v5uiuhih	29	34	EM	EM	NNP
cord-324395-v5uiuhih	29	35	)	)	-RRB-
cord-324395-v5uiuhih	29	36	or	or	CC
cord-324395-v5uiuhih	29	37	nuclear	nuclear	JJ
cord-324395-v5uiuhih	29	38	magnetic	magnetic	JJ
cord-324395-v5uiuhih	29	39	resonance	resonance	NN
cord-324395-v5uiuhih	29	40	(	(	-LRB-
cord-324395-v5uiuhih	29	41	NMR	NMR	NNP
cord-324395-v5uiuhih	29	42	)	)	-RRB-
cord-324395-v5uiuhih	29	43	)	)	-RRB-
cord-324395-v5uiuhih	29	44	.	.	.
cord-324395-v5uiuhih	30	1	Computational	computational	JJ
cord-324395-v5uiuhih	30	2	methods	method	NNS
cord-324395-v5uiuhih	30	3	,	,	,
cord-324395-v5uiuhih	30	4	such	such	JJ
cord-324395-v5uiuhih	30	5	as	as	IN
cord-324395-v5uiuhih	30	6	molecular	molecular	JJ
cord-324395-v5uiuhih	30	7	dynamics	dynamic	NNS
cord-324395-v5uiuhih	30	8	(	(	-LRB-
cord-324395-v5uiuhih	30	9	MD	MD	NNP
cord-324395-v5uiuhih	30	10	)	)	-RRB-
cord-324395-v5uiuhih	30	11	can	can	MD
cord-324395-v5uiuhih	30	12	help	help	VB
cord-324395-v5uiuhih	30	13	resolve	resolve	VB
cord-324395-v5uiuhih	30	14	glycan	glycan	NN
cord-324395-v5uiuhih	30	15	dynamics	dynamic	NNS
cord-324395-v5uiuhih	30	16	but	but	CC
cord-324395-v5uiuhih	30	17	this	this	DT
cord-324395-v5uiuhih	30	18	method	method	NN
cord-324395-v5uiuhih	30	19	is	be	VBZ
cord-324395-v5uiuhih	30	20	computationally	computationally	RB
cord-324395-v5uiuhih	30	21	intensive	intensive	JJ
cord-324395-v5uiuhih	30	22	and	and	CC
cord-324395-v5uiuhih	30	23	can	can	MD
cord-324395-v5uiuhih	30	24	not	not	RB
cord-324395-v5uiuhih	30	25	be	be	VB
cord-324395-v5uiuhih	30	26	used	use	VBN
cord-324395-v5uiuhih	30	27	for	for	IN
cord-324395-v5uiuhih	30	28	the	the	DT
cord-324395-v5uiuhih	30	29	rapid	rapid	JJ
cord-324395-v5uiuhih	30	30	modeling	modeling	NN
cord-324395-v5uiuhih	30	31	of	of	IN
cord-324395-v5uiuhih	30	32	glycan	glycan	NN
cord-324395-v5uiuhih	30	33	structure	structure	NN
cord-324395-v5uiuhih	30	34	.	.	.
cord-324395-v5uiuhih	31	1	Complementary	complementary	JJ
cord-324395-v5uiuhih	31	2	techniques	technique	NNS
cord-324395-v5uiuhih	31	3	that	that	WDT
cord-324395-v5uiuhih	31	4	are	be	VBP
cord-324395-v5uiuhih	31	5	more	more	RBR
cord-324395-v5uiuhih	31	6	rapid	rapid	JJ
cord-324395-v5uiuhih	31	7	and	and	CC
cord-324395-v5uiuhih	31	8	available	available	JJ
cord-324395-v5uiuhih	31	9	through	through	IN
cord-324395-v5uiuhih	31	10	a	a	DT
cord-324395-v5uiuhih	31	11	graphical	graphical	JJ
cord-324395-v5uiuhih	31	12	user	user	NN
cord-324395-v5uiuhih	31	13	interface	interface	NN
cord-324395-v5uiuhih	31	14	(	(	-LRB-
cord-324395-v5uiuhih	31	15	GUI	GUI	NNP
cord-324395-v5uiuhih	31	16	)	)	-RRB-
cord-324395-v5uiuhih	31	17	should	should	MD
cord-324395-v5uiuhih	31	18	allow	allow	VB
cord-324395-v5uiuhih	31	19	users	user	NNS
cord-324395-v5uiuhih	31	20	to	to	TO
cord-324395-v5uiuhih	31	21	gain	gain	VB
cord-324395-v5uiuhih	31	22	new	new	JJ
cord-324395-v5uiuhih	31	23	insights	insight	NNS
cord-324395-v5uiuhih	31	24	into	into	IN
cord-324395-v5uiuhih	31	25	glycanprotein	glycanprotein	NNP
cord-324395-v5uiuhih	31	26	structure	structure	NN
cord-324395-v5uiuhih	31	27	.	.	.
cord-324395-v5uiuhih	32	1	In	in	IN
cord-324395-v5uiuhih	32	2	silico	silico	NN
cord-324395-v5uiuhih	32	3	modeling	modeling	NN
cord-324395-v5uiuhih	32	4	of	of	IN
cord-324395-v5uiuhih	32	5	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	32	6	is	be	VBZ
cord-324395-v5uiuhih	32	7	a	a	DT
cord-324395-v5uiuhih	32	8	tedious	tedious	JJ
cord-324395-v5uiuhih	32	9	and	and	CC
cord-324395-v5uiuhih	32	10	time	time	NN
cord-324395-v5uiuhih	32	11	consuming	consume	VBG
cord-324395-v5uiuhih	32	12	process	process	NN
cord-324395-v5uiuhih	32	13	and	and	CC
cord-324395-v5uiuhih	32	14	tools	tool	NNS
cord-324395-v5uiuhih	32	15	,	,	,
cord-324395-v5uiuhih	32	16	such	such	JJ
cord-324395-v5uiuhih	32	17	as	as	IN
cord-324395-v5uiuhih	32	18	Carb	Carb	NNP
cord-324395-v5uiuhih	32	19	-	-	HYPH
cord-324395-v5uiuhih	32	20	Builder	Builder	NNP
cord-324395-v5uiuhih	32	21	[	[	-LRB-
cord-324395-v5uiuhih	32	22	12	12	CD
cord-324395-v5uiuhih	32	23	]	]	-RRB-
cord-324395-v5uiuhih	32	24	,	,	,
cord-324395-v5uiuhih	32	25	POLYS	POLYS	NNP
cord-324395-v5uiuhih	32	26	[	[	-LRB-
cord-324395-v5uiuhih	32	27	13	13	CD
cord-324395-v5uiuhih	32	28	]	]	-RRB-
cord-324395-v5uiuhih	32	29	,	,	,
cord-324395-v5uiuhih	32	30	doGlycans	doGlycans	NNP
cord-324395-v5uiuhih	32	31	[	[	-LRB-
cord-324395-v5uiuhih	32	32	14	14	CD
cord-324395-v5uiuhih	32	33	]	]	-RRB-
cord-324395-v5uiuhih	32	34	,	,	,
cord-324395-v5uiuhih	32	35	SWEET	SWEET	NNP
cord-324395-v5uiuhih	32	36	-	-	HYPH
cord-324395-v5uiuhih	32	37	II	II	NNP
cord-324395-v5uiuhih	32	38	[	[	-LRB-
cord-324395-v5uiuhih	32	39	15	15	CD
cord-324395-v5uiuhih	32	40	]	]	-RRB-
cord-324395-v5uiuhih	32	41	,	,	,
cord-324395-v5uiuhih	32	42	GLYCAM	GLYCAM	NNP
cord-324395-v5uiuhih	32	43	-	-	HYPH
cord-324395-v5uiuhih	32	44	Web	Web	NNP
cord-324395-v5uiuhih	32	45	[	[	-LRB-
cord-324395-v5uiuhih	32	46	16	16	CD
cord-324395-v5uiuhih	32	47	]	]	-RRB-
cord-324395-v5uiuhih	32	48	,	,	,
cord-324395-v5uiuhih	32	49	Glycan	Glycan	NNP
cord-324395-v5uiuhih	32	50	Reader	Reader	NNP
cord-324395-v5uiuhih	32	51	[	[	-LRB-
cord-324395-v5uiuhih	32	52	17	17	CD
cord-324395-v5uiuhih	32	53	,	,	,
cord-324395-v5uiuhih	32	54	18	18	CD
cord-324395-v5uiuhih	32	55	]	]	-RRB-
cord-324395-v5uiuhih	32	56	and	and	CC
cord-324395-v5uiuhih	32	57	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	32	58	-	-	HYPH
cord-324395-v5uiuhih	32	59	GUI	gui	NN
cord-324395-v5uiuhih	32	60	glycan	glycan	NN
cord-324395-v5uiuhih	32	61	modeler	modeler	NN
cord-324395-v5uiuhih	32	62	[	[	-LRB-
cord-324395-v5uiuhih	32	63	19	19	CD
cord-324395-v5uiuhih	32	64	]	]	-RRB-
cord-324395-v5uiuhih	32	65	were	be	VBD
cord-324395-v5uiuhih	32	66	developed	develop	VBN
cord-324395-v5uiuhih	32	67	to	to	TO
cord-324395-v5uiuhih	32	68	facilitate	facilitate	VB
cord-324395-v5uiuhih	32	69	the	the	DT
cord-324395-v5uiuhih	32	70	modeling	modeling	NN
cord-324395-v5uiuhih	32	71	of	of	IN
cord-324395-v5uiuhih	32	72	glycans	glycan	NNS
cord-324395-v5uiuhih	32	73	.	.	.
cord-324395-v5uiuhih	33	1	CarbBuilder	CarbBuilder	NNP
cord-324395-v5uiuhih	33	2	,	,	,
cord-324395-v5uiuhih	33	3	POLYS	POLYS	NNP
cord-324395-v5uiuhih	33	4	and	and	CC
cord-324395-v5uiuhih	33	5	doGlycans	doglycan	NNS
cord-324395-v5uiuhih	33	6	are	be	VBP
cord-324395-v5uiuhih	33	7	open	open	JJ
cord-324395-v5uiuhih	33	8	source	source	NN
cord-324395-v5uiuhih	33	9	programs	program	NNS
cord-324395-v5uiuhih	33	10	that	that	WDT
cord-324395-v5uiuhih	33	11	allow	allow	VBP
cord-324395-v5uiuhih	33	12	building	building	NN
cord-324395-v5uiuhih	33	13	glycan	glycan	NN
cord-324395-v5uiuhih	33	14	structures	structure	NNS
cord-324395-v5uiuhih	33	15	from	from	IN
cord-324395-v5uiuhih	33	16	their	-PRON-	PRP$
cord-324395-v5uiuhih	33	17	primary	primary	JJ
cord-324395-v5uiuhih	33	18	sequence	sequence	NN
cord-324395-v5uiuhih	33	19	of	of	IN
cord-324395-v5uiuhih	33	20	monosaccharide	monosaccharide	NN
cord-324395-v5uiuhih	33	21	units	unit	NNS
cord-324395-v5uiuhih	33	22	.	.	.
cord-324395-v5uiuhih	34	1	SWEET	SWEET	NNP
cord-324395-v5uiuhih	34	2	-	-	HYPH
cord-324395-v5uiuhih	34	3	II	II	NNP
cord-324395-v5uiuhih	34	4	is	be	VBZ
cord-324395-v5uiuhih	34	5	part	part	NN
cord-324395-v5uiuhih	34	6	of	of	IN
cord-324395-v5uiuhih	34	7	the	the	DT
cord-324395-v5uiuhih	34	8	website	website	NN
cord-324395-v5uiuhih	34	9	Glycosciences	Glycosciences	NNP
cord-324395-v5uiuhih	34	10	.	.	.
cord-324395-v5uiuhih	35	1	DB	DB	NNP
cord-324395-v5uiuhih	35	2	[	[	-LRB-
cord-324395-v5uiuhih	35	3	20	20	CD
cord-324395-v5uiuhih	35	4	]	]	-RRB-
cord-324395-v5uiuhih	35	5	and	and	CC
cord-324395-v5uiuhih	35	6	can	can	MD
cord-324395-v5uiuhih	35	7	be	be	VB
cord-324395-v5uiuhih	35	8	used	use	VBN
cord-324395-v5uiuhih	35	9	to	to	TO
cord-324395-v5uiuhih	35	10	build	build	VB
cord-324395-v5uiuhih	35	11	3D	3d	JJ
cord-324395-v5uiuhih	35	12	structures	structure	NNS
cord-324395-v5uiuhih	35	13	of	of	IN
cord-324395-v5uiuhih	35	14	glycans	glycan	NNS
cord-324395-v5uiuhih	35	15	.	.	.
cord-324395-v5uiuhih	36	1	Furthermore	furthermore	RB
cord-324395-v5uiuhih	36	2	,	,	,
cord-324395-v5uiuhih	36	3	the	the	DT
cord-324395-v5uiuhih	36	4	website	website	NN
cord-324395-v5uiuhih	36	5	provides	provide	VBZ
cord-324395-v5uiuhih	36	6	a	a	DT
cord-324395-v5uiuhih	36	7	number	number	NN
cord-324395-v5uiuhih	36	8	of	of	IN
cord-324395-v5uiuhih	36	9	tools	tool	NNS
cord-324395-v5uiuhih	36	10	for	for	IN
cord-324395-v5uiuhih	36	11	manipulating	manipulate	VBG
cord-324395-v5uiuhih	36	12	and	and	CC
cord-324395-v5uiuhih	36	13	analyzing	analyze	VBG
cord-324395-v5uiuhih	36	14	glycans	glycan	NNS
cord-324395-v5uiuhih	36	15	.	.	.
cord-324395-v5uiuhih	37	1	GLYCAM	GLYCAM	NNP
cord-324395-v5uiuhih	37	2	-	-	HYPH
cord-324395-v5uiuhih	37	3	Web	Web	NNP
cord-324395-v5uiuhih	37	4	offers	offer	VBZ
cord-324395-v5uiuhih	37	5	several	several	JJ
cord-324395-v5uiuhih	37	6	options	option	NNS
cord-324395-v5uiuhih	37	7	that	that	WDT
cord-324395-v5uiuhih	37	8	simplify	simplify	VBP
cord-324395-v5uiuhih	37	9	the	the	DT
cord-324395-v5uiuhih	37	10	building	building	NN
cord-324395-v5uiuhih	37	11	and	and	CC
cord-324395-v5uiuhih	37	12	set	set	NN
cord-324395-v5uiuhih	37	13	-	-	HYPH
cord-324395-v5uiuhih	37	14	up	up	NN
cord-324395-v5uiuhih	37	15	of	of	IN
cord-324395-v5uiuhih	37	16	molecular	molecular	JJ
cord-324395-v5uiuhih	37	17	dynamics	dynamic	NNS
cord-324395-v5uiuhih	37	18	simulations	simulation	NNS
cord-324395-v5uiuhih	37	19	of	of	IN
cord-324395-v5uiuhih	37	20	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	37	21	.	.	.
cord-324395-v5uiuhih	38	1	It	-PRON-	PRP
cord-324395-v5uiuhih	38	2	uses	use	VBZ
cord-324395-v5uiuhih	38	3	the	the	DT
cord-324395-v5uiuhih	38	4	GLYCAM	GLYCAM	NNP
cord-324395-v5uiuhih	38	5	force	force	NN
cord-324395-v5uiuhih	38	6	field	field	NN
cord-324395-v5uiuhih	38	7	[	[	-LRB-
cord-324395-v5uiuhih	38	8	21	21	CD
cord-324395-v5uiuhih	38	9	]	]	-RRB-
cord-324395-v5uiuhih	38	10	that	that	WDT
cord-324395-v5uiuhih	38	11	is	be	VBZ
cord-324395-v5uiuhih	38	12	compatible	compatible	JJ
cord-324395-v5uiuhih	38	13	with	with	IN
cord-324395-v5uiuhih	38	14	the	the	DT
cord-324395-v5uiuhih	38	15	AMBER	AMBER	NNP
cord-324395-v5uiuhih	38	16	force	force	NN
cord-324395-v5uiuhih	38	17	field	field	NN
cord-324395-v5uiuhih	38	18	.	.	.
cord-324395-v5uiuhih	39	1	Finally	finally	RB
cord-324395-v5uiuhih	39	2	,	,	,
cord-324395-v5uiuhih	39	3	Glycan	Glycan	NNP
cord-324395-v5uiuhih	39	4	Reader	Reader	NNP
cord-324395-v5uiuhih	39	5	recognizes	recognize	VBZ
cord-324395-v5uiuhih	39	6	most	most	JJS
cord-324395-v5uiuhih	39	7	types	type	NNS
cord-324395-v5uiuhih	39	8	of	of	IN
cord-324395-v5uiuhih	39	9	glycans	glycan	NNS
cord-324395-v5uiuhih	39	10	and	and	CC
cord-324395-v5uiuhih	39	11	their	-PRON-	PRP$
cord-324395-v5uiuhih	39	12	chemical	chemical	NN
cord-324395-v5uiuhih	39	13	modifications	modification	NNS
cord-324395-v5uiuhih	39	14	found	find	VBN
cord-324395-v5uiuhih	39	15	in	in	IN
cord-324395-v5uiuhih	39	16	the	the	DT
cord-324395-v5uiuhih	39	17	Protein	Protein	NNP
cord-324395-v5uiuhih	39	18	Data	Data	NNP
cord-324395-v5uiuhih	39	19	Bank	Bank	NNP
cord-324395-v5uiuhih	39	20	(	(	-LRB-
cord-324395-v5uiuhih	39	21	PDB	PDB	NNP
cord-324395-v5uiuhih	39	22	)	)	-RRB-
cord-324395-v5uiuhih	39	23	,	,	,
cord-324395-v5uiuhih	39	24	which	which	WDT
cord-324395-v5uiuhih	39	25	are	be	VBP
cord-324395-v5uiuhih	39	26	all	all	DT
cord-324395-v5uiuhih	39	27	available	available	JJ
cord-324395-v5uiuhih	39	28	in	in	IN
cord-324395-v5uiuhih	39	29	the	the	DT
cord-324395-v5uiuhih	39	30	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	39	31	force	force	NN
cord-324395-v5uiuhih	39	32	field	field	NN
cord-324395-v5uiuhih	39	33	[	[	-LRB-
cord-324395-v5uiuhih	39	34	22	22	CD
cord-324395-v5uiuhih	39	35	]	]	-RRB-
cord-324395-v5uiuhih	39	36	.	.	.
cord-324395-v5uiuhih	40	1	It	-PRON-	PRP
cord-324395-v5uiuhih	40	2	also	also	RB
cord-324395-v5uiuhih	40	3	provides	provide	VBZ
cord-324395-v5uiuhih	40	4	the	the	DT
cord-324395-v5uiuhih	40	5	option	option	NN
cord-324395-v5uiuhih	40	6	for	for	IN
cord-324395-v5uiuhih	40	7	editing	edit	VBG
cord-324395-v5uiuhih	40	8	their	-PRON-	PRP$
cord-324395-v5uiuhih	40	9	threedimensional	threedimensional	JJ
cord-324395-v5uiuhih	40	10	structure	structure	NN
cord-324395-v5uiuhih	40	11	.	.	.
cord-324395-v5uiuhih	41	1	Glycan	Glycan	NNP
cord-324395-v5uiuhih	41	2	Modeler	Modeler	NNP
cord-324395-v5uiuhih	41	3	generates	generate	VBZ
cord-324395-v5uiuhih	41	4	complex	complex	JJ
cord-324395-v5uiuhih	41	5	glycans	glycan	NNS
cord-324395-v5uiuhih	41	6	and	and	CC
cord-324395-v5uiuhih	41	7	glycoconjugates	glycoconjugate	NNS
cord-324395-v5uiuhih	41	8	by	by	IN
cord-324395-v5uiuhih	41	9	searching	search	VBG
cord-324395-v5uiuhih	41	10	templates	template	NNS
cord-324395-v5uiuhih	41	11	from	from	IN
cord-324395-v5uiuhih	41	12	a	a	DT
cord-324395-v5uiuhih	41	13	fragment	fragment	NN
cord-324395-v5uiuhih	41	14	database	database	NN
cord-324395-v5uiuhih	41	15	.	.	.
cord-324395-v5uiuhih	42	1	Glycan	Glycan	NNP
cord-324395-v5uiuhih	42	2	Reader	Reader	NNP
cord-324395-v5uiuhih	42	3	and	and	CC
cord-324395-v5uiuhih	42	4	Modeler	Modeler	NNP
cord-324395-v5uiuhih	42	5	have	have	VBP
cord-324395-v5uiuhih	42	6	both	both	DT
cord-324395-v5uiuhih	42	7	been	be	VBN
cord-324395-v5uiuhih	42	8	integrated	integrate	VBN
cord-324395-v5uiuhih	42	9	into	into	IN
cord-324395-v5uiuhih	42	10	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	42	11	-	-	HYPH
cord-324395-v5uiuhih	42	12	GUI	GUI	NNP
cord-324395-v5uiuhih	42	13	[	[	-LRB-
cord-324395-v5uiuhih	42	14	23	23	CD
cord-324395-v5uiuhih	42	15	]	]	-RRB-
cord-324395-v5uiuhih	42	16	,	,	,
cord-324395-v5uiuhih	42	17	a	a	DT
cord-324395-v5uiuhih	42	18	powerful	powerful	JJ
cord-324395-v5uiuhih	42	19	website	website	NN
cord-324395-v5uiuhih	42	20	widely	widely	RB
cord-324395-v5uiuhih	42	21	employed	employ	VBN
cord-324395-v5uiuhih	42	22	for	for	IN
cord-324395-v5uiuhih	42	23	setting	set	VBG
cord-324395-v5uiuhih	42	24	up	up	RP
cord-324395-v5uiuhih	42	25	molecular	molecular	JJ
cord-324395-v5uiuhih	42	26	dynamics	dynamic	NNS
cord-324395-v5uiuhih	42	27	simulation	simulation	NN
cord-324395-v5uiuhih	42	28	.	.	.
cord-324395-v5uiuhih	43	1	In	in	IN
cord-324395-v5uiuhih	43	2	addition	addition	NN
cord-324395-v5uiuhih	43	3	,	,	,
cord-324395-v5uiuhih	43	4	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	43	5	-	-	HYPH
cord-324395-v5uiuhih	43	6	GUI	GUI	NNP
cord-324395-v5uiuhih	43	7	provides	provide	VBZ
cord-324395-v5uiuhih	43	8	the	the	DT
cord-324395-v5uiuhih	43	9	functionality	functionality	NN
cord-324395-v5uiuhih	43	10	for	for	IN
cord-324395-v5uiuhih	43	11	modelling	model	VBG
cord-324395-v5uiuhih	43	12	glycolipids	glycolipid	NNS
cord-324395-v5uiuhih	43	13	and	and	CC
cord-324395-v5uiuhih	43	14	lipopolysaccharides	lipopolysaccharides	NNP
cord-324395-v5uiuhih	43	15	(	(	-LRB-
cord-324395-v5uiuhih	43	16	LPS	LPS	NNP
cord-324395-v5uiuhih	43	17	)	)	-RRB-
cord-324395-v5uiuhih	43	18	and	and	CC
cord-324395-v5uiuhih	43	19	to	to	TO
cord-324395-v5uiuhih	43	20	combine	combine	VB
cord-324395-v5uiuhih	43	21	them	-PRON-	PRP
cord-324395-v5uiuhih	43	22	with	with	IN
cord-324395-v5uiuhih	43	23	complex	complex	JJ
cord-324395-v5uiuhih	43	24	biological	biological	JJ
cord-324395-v5uiuhih	43	25	membrane	membrane	NN
cord-324395-v5uiuhih	43	26	simulations	simulation	NNS
cord-324395-v5uiuhih	43	27	[	[	-LRB-
cord-324395-v5uiuhih	43	28	24	24	CD
cord-324395-v5uiuhih	43	29	]	]	-RRB-
cord-324395-v5uiuhih	43	30	.	.	.
cord-324395-v5uiuhih	44	1	While	while	IN
cord-324395-v5uiuhih	44	2	many	many	JJ
cord-324395-v5uiuhih	44	3	of	of	IN
cord-324395-v5uiuhih	44	4	these	these	DT
cord-324395-v5uiuhih	44	5	tools	tool	NNS
cord-324395-v5uiuhih	44	6	are	be	VBP
cord-324395-v5uiuhih	44	7	available	available	JJ
cord-324395-v5uiuhih	44	8	as	as	IN
cord-324395-v5uiuhih	44	9	webservers	webserver	NNS
cord-324395-v5uiuhih	44	10	making	make	VBG
cord-324395-v5uiuhih	44	11	them	-PRON-	PRP
cord-324395-v5uiuhih	44	12	ideal	ideal	JJ
cord-324395-v5uiuhih	44	13	for	for	IN
cord-324395-v5uiuhih	44	14	their	-PRON-	PRP$
cord-324395-v5uiuhih	44	15	ease	ease	NN
cord-324395-v5uiuhih	44	16	of	of	IN
cord-324395-v5uiuhih	44	17	use	use	NN
cord-324395-v5uiuhih	44	18	and	and	CC
cord-324395-v5uiuhih	44	19	distribution	distribution	NN
cord-324395-v5uiuhih	44	20	,	,	,
cord-324395-v5uiuhih	44	21	this	this	DT
cord-324395-v5uiuhih	44	22	limits	limit	VBZ
cord-324395-v5uiuhih	44	23	their	-PRON-	PRP$
cord-324395-v5uiuhih	44	24	ability	ability	NN
cord-324395-v5uiuhih	44	25	to	to	TO
cord-324395-v5uiuhih	44	26	be	be	VB
cord-324395-v5uiuhih	44	27	customized	customize	VBN
cord-324395-v5uiuhih	44	28	for	for	IN
cord-324395-v5uiuhih	44	29	the	the	DT
cord-324395-v5uiuhih	44	30	specific	specific	JJ
cord-324395-v5uiuhih	44	31	needs	need	NNS
cord-324395-v5uiuhih	44	32	of	of	IN
cord-324395-v5uiuhih	44	33	some	some	DT
cord-324395-v5uiuhih	44	34	users	user	NNS
cord-324395-v5uiuhih	44	35	;	;	:
cord-324395-v5uiuhih	44	36	for	for	IN
cord-324395-v5uiuhih	44	37	example	example	NN
cord-324395-v5uiuhih	44	38	,	,	,
cord-324395-v5uiuhih	44	39	for	for	IN
cord-324395-v5uiuhih	44	40	tasks	task	NNS
cord-324395-v5uiuhih	44	41	that	that	WDT
cord-324395-v5uiuhih	44	42	require	require	VBP
cord-324395-v5uiuhih	44	43	batch	batch	NN
cord-324395-v5uiuhih	44	44	modeling	modeling	NN
cord-324395-v5uiuhih	44	45	of	of	IN
cord-324395-v5uiuhih	44	46	several	several	JJ
cord-324395-v5uiuhih	44	47	glycoforms	glycoform	NNS
cord-324395-v5uiuhih	44	48	for	for	IN
cord-324395-v5uiuhih	44	49	a	a	DT
cord-324395-v5uiuhih	44	50	given	give	VBN
cord-324395-v5uiuhih	44	51	protein	protein	NN
cord-324395-v5uiuhih	44	52	or	or	CC
cord-324395-v5uiuhih	44	53	adding	add	VBG
cord-324395-v5uiuhih	44	54	non	non	JJ
cord-324395-v5uiuhih	44	55	-	-	JJ
cord-324395-v5uiuhih	44	56	canonical	canonical	JJ
cord-324395-v5uiuhih	44	57	saccharides	saccharide	NNS
cord-324395-v5uiuhih	44	58	to	to	IN
cord-324395-v5uiuhih	44	59	a	a	DT
cord-324395-v5uiuhih	44	60	protein	protein	NN
cord-324395-v5uiuhih	44	61	structure	structure	NN
cord-324395-v5uiuhih	44	62	.	.	.
cord-324395-v5uiuhih	45	1	We	-PRON-	PRP
cord-324395-v5uiuhih	45	2	describe	describe	VBP
cord-324395-v5uiuhih	45	3	here	here	RB
cord-324395-v5uiuhih	45	4	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	45	5	,	,	,
cord-324395-v5uiuhih	45	6	a	a	DT
cord-324395-v5uiuhih	45	7	Python	Python	NNP
cord-324395-v5uiuhih	45	8	framework	framework	NN
cord-324395-v5uiuhih	45	9	designed	design	VBN
cord-324395-v5uiuhih	45	10	for	for	IN
cord-324395-v5uiuhih	45	11	the	the	DT
cord-324395-v5uiuhih	45	12	rapid	rapid	JJ
cord-324395-v5uiuhih	45	13	modeling	modeling	NN
cord-324395-v5uiuhih	45	14	of	of	IN
cord-324395-v5uiuhih	45	15	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	45	16	.	.	.
cord-324395-v5uiuhih	46	1	It	-PRON-	PRP
cord-324395-v5uiuhih	46	2	can	can	MD
cord-324395-v5uiuhih	46	3	be	be	VB
cord-324395-v5uiuhih	46	4	used	use	VBN
cord-324395-v5uiuhih	46	5	directly	directly	RB
cord-324395-v5uiuhih	46	6	in	in	IN
cord-324395-v5uiuhih	46	7	a	a	DT
cord-324395-v5uiuhih	46	8	Python	Python	NNP
cord-324395-v5uiuhih	46	9	terminal	terminal	NN
cord-324395-v5uiuhih	46	10	or	or	CC
cord-324395-v5uiuhih	46	11	script	script	NN
cord-324395-v5uiuhih	46	12	to	to	TO
cord-324395-v5uiuhih	46	13	identify	identify	VB
cord-324395-v5uiuhih	46	14	,	,	,
cord-324395-v5uiuhih	46	15	manipulate	manipulate	VB
cord-324395-v5uiuhih	46	16	,	,	,
cord-324395-v5uiuhih	46	17	and	and	CC
cord-324395-v5uiuhih	46	18	build	build	VB
cord-324395-v5uiuhih	46	19	glycans	glycan	NNS
cord-324395-v5uiuhih	46	20	.	.	.
cord-324395-v5uiuhih	47	1	In	in	IN
cord-324395-v5uiuhih	47	2	addition	addition	NN
cord-324395-v5uiuhih	47	3	,	,	,
cord-324395-v5uiuhih	47	4	the	the	DT
cord-324395-v5uiuhih	47	5	GUI	GUI	NNP
cord-324395-v5uiuhih	47	6	allows	allow	VBZ
cord-324395-v5uiuhih	47	7	for	for	IN
cord-324395-v5uiuhih	47	8	the	the	DT
cord-324395-v5uiuhih	47	9	quick	quick	JJ
cord-324395-v5uiuhih	47	10	visualization	visualization	NN
cord-324395-v5uiuhih	47	11	and	and	CC
cord-324395-v5uiuhih	47	12	modification	modification	NN
cord-324395-v5uiuhih	47	13	of	of	IN
cord-324395-v5uiuhih	47	14	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	47	15	proteins	protein	NNS
cord-324395-v5uiuhih	47	16	(	(	-LRB-
cord-324395-v5uiuhih	47	17	such	such	JJ
cord-324395-v5uiuhih	47	18	as	as	IN
cord-324395-v5uiuhih	47	19	one	one	CD
cord-324395-v5uiuhih	47	20	downloaded	download	VBN
cord-324395-v5uiuhih	47	21	directly	directly	RB
cord-324395-v5uiuhih	47	22	from	from	IN
cord-324395-v5uiuhih	47	23	the	the	DT
cord-324395-v5uiuhih	47	24	PDB	PDB	NNP
cord-324395-v5uiuhih	47	25	)	)	-RRB-
cord-324395-v5uiuhih	47	26	.	.	.
cord-324395-v5uiuhih	48	1	The	the	DT
cord-324395-v5uiuhih	48	2	molecular	molecular	JJ
cord-324395-v5uiuhih	48	3	description	description	NN
cord-324395-v5uiuhih	48	4	of	of	IN
cord-324395-v5uiuhih	48	5	glycans	glycan	NNS
cord-324395-v5uiuhih	48	6	is	be	VBZ
cord-324395-v5uiuhih	48	7	based	base	VBN
cord-324395-v5uiuhih	48	8	on	on	IN
cord-324395-v5uiuhih	48	9	the	the	DT
cord-324395-v5uiuhih	48	10	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	48	11	force	force	NN
cord-324395-v5uiuhih	48	12	field	field	NN
cord-324395-v5uiuhih	48	13	[	[	-LRB-
cord-324395-v5uiuhih	48	14	22	22	CD
cord-324395-v5uiuhih	48	15	]	]	-RRB-
cord-324395-v5uiuhih	48	16	.	.	.
cord-324395-v5uiuhih	49	1	New	new	JJ
cord-324395-v5uiuhih	49	2	saccharides	saccharide	NNS
cord-324395-v5uiuhih	49	3	appearing	appear	VBG
cord-324395-v5uiuhih	49	4	in	in	IN
cord-324395-v5uiuhih	49	5	updated	update	VBN
cord-324395-v5uiuhih	49	6	versions	version	NNS
cord-324395-v5uiuhih	49	7	of	of	IN
cord-324395-v5uiuhih	49	8	the	the	DT
cord-324395-v5uiuhih	49	9	force	force	NN
cord-324395-v5uiuhih	49	10	field	field	NN
cord-324395-v5uiuhih	49	11	or	or	CC
cord-324395-v5uiuhih	49	12	defined	define	VBN
cord-324395-v5uiuhih	49	13	by	by	IN
cord-324395-v5uiuhih	49	14	the	the	DT
cord-324395-v5uiuhih	49	15	user	user	NN
cord-324395-v5uiuhih	49	16	can	can	MD
cord-324395-v5uiuhih	49	17	easily	easily	RB
cord-324395-v5uiuhih	49	18	be	be	VB
cord-324395-v5uiuhih	49	19	added	add	VBN
cord-324395-v5uiuhih	49	20	.	.	.
cord-324395-v5uiuhih	50	1	Modeled	model	VBN
cord-324395-v5uiuhih	50	2	glycans	glycan	NNS
cord-324395-v5uiuhih	50	3	can	can	MD
cord-324395-v5uiuhih	50	4	be	be	VB
cord-324395-v5uiuhih	50	5	further	further	RB
cord-324395-v5uiuhih	50	6	refined	refine	VBN
cord-324395-v5uiuhih	50	7	by	by	IN
cord-324395-v5uiuhih	50	8	removing	remove	VBG
cord-324395-v5uiuhih	50	9	clashes	clash	NNS
cord-324395-v5uiuhih	50	10	and	and	CC
cord-324395-v5uiuhih	50	11	sampling	sample	VBG
cord-324395-v5uiuhih	50	12	alternate	alternate	JJ
cord-324395-v5uiuhih	50	13	conformations	conformation	NNS
cord-324395-v5uiuhih	50	14	.	.	.
cord-324395-v5uiuhih	51	1	Since	since	IN
cord-324395-v5uiuhih	51	2	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	51	3	is	be	VBZ
cord-324395-v5uiuhih	51	4	distributed	distribute	VBN
cord-324395-v5uiuhih	51	5	as	as	IN
cord-324395-v5uiuhih	51	6	a	a	DT
cord-324395-v5uiuhih	51	7	Python	Python	NNP
cord-324395-v5uiuhih	51	8	package	package	NN
cord-324395-v5uiuhih	51	9	,	,	,
cord-324395-v5uiuhih	51	10	users	user	NNS
cord-324395-v5uiuhih	51	11	can	can	MD
cord-324395-v5uiuhih	51	12	easily	easily	RB
cord-324395-v5uiuhih	51	13	adapt	adapt	VB
cord-324395-v5uiuhih	51	14	the	the	DT
cord-324395-v5uiuhih	51	15	code	code	NN
cord-324395-v5uiuhih	51	16	to	to	TO
cord-324395-v5uiuhih	51	17	meet	meet	VB
cord-324395-v5uiuhih	51	18	their	-PRON-	PRP$
cord-324395-v5uiuhih	51	19	specific	specific	JJ
cord-324395-v5uiuhih	51	20	needs	need	NNS
cord-324395-v5uiuhih	51	21	.	.	.
cord-324395-v5uiuhih	52	1	The	the	DT
cord-324395-v5uiuhih	52	2	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	52	3	framework	framework	NN
cord-324395-v5uiuhih	52	4	is	be	VBZ
cord-324395-v5uiuhih	52	5	composed	compose	VBN
cord-324395-v5uiuhih	52	6	of	of	IN
cord-324395-v5uiuhih	52	7	7	7	CD
cord-324395-v5uiuhih	52	8	classes	class	NNS
cord-324395-v5uiuhih	52	9	,	,	,
cord-324395-v5uiuhih	52	10	several	several	JJ
cord-324395-v5uiuhih	52	11	of	of	IN
cord-324395-v5uiuhih	52	12	which	which	WDT
cord-324395-v5uiuhih	52	13	can	can	MD
cord-324395-v5uiuhih	52	14	be	be	VB
cord-324395-v5uiuhih	52	15	employed	employ	VBN
cord-324395-v5uiuhih	52	16	as	as	IN
cord-324395-v5uiuhih	52	17	standalone	standalone	JJ
cord-324395-v5uiuhih	52	18	instances	instance	NNS
cord-324395-v5uiuhih	52	19	for	for	IN
cord-324395-v5uiuhih	52	20	other	other	JJ
cord-324395-v5uiuhih	52	21	applications	application	NNS
cord-324395-v5uiuhih	52	22	in	in	IN
cord-324395-v5uiuhih	52	23	molecular	molecular	JJ
cord-324395-v5uiuhih	52	24	modeling	modeling	NN
cord-324395-v5uiuhih	52	25	(	(	-LRB-
cord-324395-v5uiuhih	52	26	Additional	additional	JJ
cord-324395-v5uiuhih	52	27	file	file	NN
cord-324395-v5uiuhih	52	28	1	1	CD
cord-324395-v5uiuhih	52	29	:	:	:
cord-324395-v5uiuhih	52	30	Figure	figure	NN
cord-324395-v5uiuhih	52	31	S1	s1	NN
cord-324395-v5uiuhih	52	32	in	in	IN
cord-324395-v5uiuhih	52	33	the	the	DT
cord-324395-v5uiuhih	52	34	Supporting	support	VBG
cord-324395-v5uiuhih	52	35	Information	information	NN
cord-324395-v5uiuhih	52	36	(	(	-LRB-
cord-324395-v5uiuhih	52	37	SI	SI	NNP
cord-324395-v5uiuhih	52	38	)	)	-RRB-
cord-324395-v5uiuhih	52	39	section	section	NN
cord-324395-v5uiuhih	52	40	)	)	-RRB-
cord-324395-v5uiuhih	52	41	.	.	.
cord-324395-v5uiuhih	53	1	At	at	IN
cord-324395-v5uiuhih	53	2	the	the	DT
cord-324395-v5uiuhih	53	3	core	core	NN
cord-324395-v5uiuhih	53	4	of	of	IN
cord-324395-v5uiuhih	53	5	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	53	6	is	be	VBZ
cord-324395-v5uiuhih	53	7	the	the	DT
cord-324395-v5uiuhih	53	8	Molecule	Molecule	NNP
cord-324395-v5uiuhih	53	9	class	class	NN
cord-324395-v5uiuhih	53	10	.	.	.
cord-324395-v5uiuhih	54	1	A	a	DT
cord-324395-v5uiuhih	54	2	Molecule	Molecule	NNP
cord-324395-v5uiuhih	54	3	is	be	VBZ
cord-324395-v5uiuhih	54	4	defined	define	VBN
cord-324395-v5uiuhih	54	5	as	as	IN
cord-324395-v5uiuhih	54	6	a	a	DT
cord-324395-v5uiuhih	54	7	single	single	JJ
cord-324395-v5uiuhih	54	8	covalently	covalently	RB
cord-324395-v5uiuhih	54	9	linked	link	VBN
cord-324395-v5uiuhih	54	10	set	set	NN
cord-324395-v5uiuhih	54	11	of	of	IN
cord-324395-v5uiuhih	54	12	atoms	atom	NNS
cord-324395-v5uiuhih	54	13	and	and	CC
cord-324395-v5uiuhih	54	14	is	be	VBZ
cord-324395-v5uiuhih	54	15	implemented	implement	VBN
cord-324395-v5uiuhih	54	16	around	around	IN
cord-324395-v5uiuhih	54	17	the	the	DT
cord-324395-v5uiuhih	54	18	ProDy	prody	XX
cord-324395-v5uiuhih	54	19	[	[	-LRB-
cord-324395-v5uiuhih	54	20	25	25	CD
cord-324395-v5uiuhih	54	21	]	]	-RRB-
cord-324395-v5uiuhih	54	22	and	and	CC
cord-324395-v5uiuhih	54	23	NetworkX	networkx	XX
cord-324395-v5uiuhih	54	24	[	[	-LRB-
cord-324395-v5uiuhih	54	25	26	26	CD
cord-324395-v5uiuhih	54	26	]	]	-RRB-
cord-324395-v5uiuhih	54	27	packages	package	NNS
cord-324395-v5uiuhih	54	28	.	.	.
cord-324395-v5uiuhih	55	1	ProDy	ProDy	NNP
cord-324395-v5uiuhih	55	2	is	be	VBZ
cord-324395-v5uiuhih	55	3	widely	widely	RB
cord-324395-v5uiuhih	55	4	used	use	VBN
cord-324395-v5uiuhih	55	5	for	for	IN
cord-324395-v5uiuhih	55	6	studying	study	VBG
cord-324395-v5uiuhih	55	7	biomolecules	biomolecule	NNS
cord-324395-v5uiuhih	55	8	and	and	CC
cord-324395-v5uiuhih	55	9	offers	offer	VBZ
cord-324395-v5uiuhih	55	10	several	several	JJ
cord-324395-v5uiuhih	55	11	functions	function	NNS
cord-324395-v5uiuhih	55	12	for	for	IN
cord-324395-v5uiuhih	55	13	storing	store	VBG
cord-324395-v5uiuhih	55	14	and	and	CC
cord-324395-v5uiuhih	55	15	manipulating	manipulate	VBG
cord-324395-v5uiuhih	55	16	structures	structure	NNS
cord-324395-v5uiuhih	55	17	.	.	.
cord-324395-v5uiuhih	56	1	The	the	DT
cord-324395-v5uiuhih	56	2	functions	function	NNS
cord-324395-v5uiuhih	56	3	and	and	CC
cord-324395-v5uiuhih	56	4	classes	class	NNS
cord-324395-v5uiuhih	56	5	provided	provide	VBN
cord-324395-v5uiuhih	56	6	are	be	VBP
cord-324395-v5uiuhih	56	7	used	use	VBN
cord-324395-v5uiuhih	56	8	in	in	IN
cord-324395-v5uiuhih	56	9	the	the	DT
cord-324395-v5uiuhih	56	10	Molecule	Molecule	NNP
cord-324395-v5uiuhih	56	11	class	class	NN
cord-324395-v5uiuhih	56	12	for	for	IN
cord-324395-v5uiuhih	56	13	saving	save	VBG
cord-324395-v5uiuhih	56	14	and	and	CC
cord-324395-v5uiuhih	56	15	quickly	quickly	RB
cord-324395-v5uiuhih	56	16	accessing	access	VBG
cord-324395-v5uiuhih	56	17	the	the	DT
cord-324395-v5uiuhih	56	18	structural	structural	JJ
cord-324395-v5uiuhih	56	19	data	datum	NNS
cord-324395-v5uiuhih	56	20	of	of	IN
cord-324395-v5uiuhih	56	21	a	a	DT
cord-324395-v5uiuhih	56	22	molecule	molecule	NN
cord-324395-v5uiuhih	56	23	.	.	.
cord-324395-v5uiuhih	57	1	The	the	DT
cord-324395-v5uiuhih	57	2	topological	topological	JJ
cord-324395-v5uiuhih	57	3	properties	property	NNS
cord-324395-v5uiuhih	57	4	of	of	IN
cord-324395-v5uiuhih	57	5	a	a	DT
cord-324395-v5uiuhih	57	6	molecule	molecule	NN
cord-324395-v5uiuhih	57	7	are	be	VBP
cord-324395-v5uiuhih	57	8	represented	represent	VBN
cord-324395-v5uiuhih	57	9	here	here	RB
cord-324395-v5uiuhih	57	10	as	as	IN
cord-324395-v5uiuhih	57	11	a	a	DT
cord-324395-v5uiuhih	57	12	graph	graph	NN
cord-324395-v5uiuhih	57	13	using	use	VBG
cord-324395-v5uiuhih	57	14	the	the	DT
cord-324395-v5uiuhih	57	15	Net	Net	NNP
cord-324395-v5uiuhih	57	16	-	-	HYPH
cord-324395-v5uiuhih	57	17	workX	workx	CD
cord-324395-v5uiuhih	57	18	package	package	NN
cord-324395-v5uiuhih	57	19	.	.	.
cord-324395-v5uiuhih	58	1	A	a	DT
cord-324395-v5uiuhih	58	2	Molecule	molecule	NN
cord-324395-v5uiuhih	58	3	can	can	MD
cord-324395-v5uiuhih	58	4	be	be	VB
cord-324395-v5uiuhih	58	5	instantiated	instantiate	VBN
cord-324395-v5uiuhih	58	6	directly	directly	RB
cord-324395-v5uiuhih	58	7	with	with	IN
cord-324395-v5uiuhih	58	8	a	a	DT
cord-324395-v5uiuhih	58	9	3D	3d	JJ
cord-324395-v5uiuhih	58	10	structure	structure	NN
cord-324395-v5uiuhih	58	11	(	(	-LRB-
cord-324395-v5uiuhih	58	12	PDB	PDB	NNP
cord-324395-v5uiuhih	58	13	)	)	-RRB-
cord-324395-v5uiuhih	58	14	or	or	CC
cord-324395-v5uiuhih	58	15	using	use	VBG
cord-324395-v5uiuhih	58	16	a	a	DT
cord-324395-v5uiuhih	58	17	MoleculeBuilder	MoleculeBuilder	NNP
cord-324395-v5uiuhih	58	18	instance	instance	NN
cord-324395-v5uiuhih	58	19	and	and	CC
cord-324395-v5uiuhih	58	20	the	the	DT
cord-324395-v5uiuhih	58	21	topology	topology	NN
cord-324395-v5uiuhih	58	22	information	information	NN
cord-324395-v5uiuhih	58	23	provided	provide	VBN
cord-324395-v5uiuhih	58	24	for	for	IN
cord-324395-v5uiuhih	58	25	the	the	DT
cord-324395-v5uiuhih	58	26	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	58	27	force	force	NN
cord-324395-v5uiuhih	58	28	field	field	NN
cord-324395-v5uiuhih	58	29	[	[	-LRB-
cord-324395-v5uiuhih	58	30	22	22	CD
cord-324395-v5uiuhih	58	31	]	]	-RRB-
cord-324395-v5uiuhih	58	32	.	.	.
cord-324395-v5uiuhih	59	1	When	when	WRB
cord-324395-v5uiuhih	59	2	loading	load	VBG
cord-324395-v5uiuhih	59	3	a	a	DT
cord-324395-v5uiuhih	59	4	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	59	5	,	,	,
cord-324395-v5uiuhih	59	6	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	59	7	will	will	MD
cord-324395-v5uiuhih	59	8	identify	identify	VB
cord-324395-v5uiuhih	59	9	all	all	DT
cord-324395-v5uiuhih	59	10	Oand	Oand	NNP
cord-324395-v5uiuhih	59	11	N	N	NNP
cord-324395-v5uiuhih	59	12	-	-	HYPH
cord-324395-v5uiuhih	59	13	linked	link	VBN
cord-324395-v5uiuhih	59	14	sequons	sequon	NNS
cord-324395-v5uiuhih	59	15	and	and	CC
cord-324395-v5uiuhih	59	16	their	-PRON-	PRP$
cord-324395-v5uiuhih	59	17	glycans	glycan	NNS
cord-324395-v5uiuhih	59	18	.	.	.
cord-324395-v5uiuhih	60	1	The	the	DT
cord-324395-v5uiuhih	60	2	structure	structure	NN
cord-324395-v5uiuhih	60	3	and	and	CC
cord-324395-v5uiuhih	60	4	topology	topology	NN
cord-324395-v5uiuhih	60	5	of	of	IN
cord-324395-v5uiuhih	60	6	each	each	DT
cord-324395-v5uiuhih	60	7	of	of	IN
cord-324395-v5uiuhih	60	8	the	the	DT
cord-324395-v5uiuhih	60	9	glycans	glycan	NNS
cord-324395-v5uiuhih	60	10	can	can	MD
cord-324395-v5uiuhih	60	11	then	then	RB
cord-324395-v5uiuhih	60	12	be	be	VB
cord-324395-v5uiuhih	60	13	modified	modify	VBN
cord-324395-v5uiuhih	60	14	.	.	.
cord-324395-v5uiuhih	61	1	Clashes	clash	NNS
cord-324395-v5uiuhih	61	2	and	and	CC
cord-324395-v5uiuhih	61	3	alternative	alternative	JJ
cord-324395-v5uiuhih	61	4	conformations	conformation	NNS
cord-324395-v5uiuhih	61	5	for	for	IN
cord-324395-v5uiuhih	61	6	glycans	glycan	NNS
cord-324395-v5uiuhih	61	7	can	can	MD
cord-324395-v5uiuhih	61	8	be	be	VB
cord-324395-v5uiuhih	61	9	optimized	optimize	VBN
cord-324395-v5uiuhih	61	10	with	with	IN
cord-324395-v5uiuhih	61	11	the	the	DT
cord-324395-v5uiuhih	61	12	Sampler	Sampler	NNP
cord-324395-v5uiuhih	61	13	class	class	NN
cord-324395-v5uiuhih	61	14	.	.	.
cord-324395-v5uiuhih	62	1	Finally	finally	RB
cord-324395-v5uiuhih	62	2	,	,	,
cord-324395-v5uiuhih	62	3	the	the	DT
cord-324395-v5uiuhih	62	4	graphical	graphical	JJ
cord-324395-v5uiuhih	62	5	representation	representation	NN
cord-324395-v5uiuhih	62	6	of	of	IN
cord-324395-v5uiuhih	62	7	glycans	glycan	NNS
cord-324395-v5uiuhih	62	8	provided	provide	VBN
cord-324395-v5uiuhih	62	9	by	by	IN
cord-324395-v5uiuhih	62	10	the	the	DT
cord-324395-v5uiuhih	62	11	Drawer	Drawer	NNP
cord-324395-v5uiuhih	62	12	class	class	NN
cord-324395-v5uiuhih	62	13	makes	make	VBZ
cord-324395-v5uiuhih	62	14	use	use	NN
cord-324395-v5uiuhih	62	15	of	of	IN
cord-324395-v5uiuhih	62	16	Matplotlib	Matplotlib	NNP
cord-324395-v5uiuhih	62	17	[	[	-LRB-
cord-324395-v5uiuhih	62	18	27	27	CD
cord-324395-v5uiuhih	62	19	]	]	-RRB-
cord-324395-v5uiuhih	62	20	,	,	,
cord-324395-v5uiuhih	62	21	a	a	DT
cord-324395-v5uiuhih	62	22	Python	Python	NNP
cord-324395-v5uiuhih	62	23	package	package	NN
cord-324395-v5uiuhih	62	24	used	use	VBN
cord-324395-v5uiuhih	62	25	for	for	IN
cord-324395-v5uiuhih	62	26	plotting	plot	VBG
cord-324395-v5uiuhih	62	27	.	.	.
cord-324395-v5uiuhih	63	1	Taken	take	VBN
cord-324395-v5uiuhih	63	2	together	together	RB
cord-324395-v5uiuhih	63	3	,	,	,
cord-324395-v5uiuhih	63	4	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	63	5	provides	provide	VBZ
cord-324395-v5uiuhih	63	6	more	more	JJR
cord-324395-v5uiuhih	63	7	functionality	functionality	NN
cord-324395-v5uiuhih	63	8	for	for	IN
cord-324395-v5uiuhih	63	9	analyzing	analyze	VBG
cord-324395-v5uiuhih	63	10	and	and	CC
cord-324395-v5uiuhih	63	11	modeling	model	VBG
cord-324395-v5uiuhih	63	12	glycans	glycan	NNS
cord-324395-v5uiuhih	63	13	than	than	IN
cord-324395-v5uiuhih	63	14	many	many	JJ
cord-324395-v5uiuhih	63	15	popular	popular	JJ
cord-324395-v5uiuhih	63	16	software	software	NN
cord-324395-v5uiuhih	63	17	packages	package	NNS
cord-324395-v5uiuhih	63	18	and	and	CC
cord-324395-v5uiuhih	63	19	webservers	webserver	NNS
cord-324395-v5uiuhih	63	20	(	(	-LRB-
cord-324395-v5uiuhih	63	21	Table	table	NN
cord-324395-v5uiuhih	63	22	1	1	CD
cord-324395-v5uiuhih	63	23	)	)	-RRB-
cord-324395-v5uiuhih	63	24	.	.	.
cord-324395-v5uiuhih	64	1	The	the	DT
cord-324395-v5uiuhih	64	2	main	main	JJ
cord-324395-v5uiuhih	64	3	functions	function	NNS
cord-324395-v5uiuhih	64	4	used	use	VBN
cord-324395-v5uiuhih	64	5	for	for	IN
cord-324395-v5uiuhih	64	6	glycosylating	glycosylate	VBG
cord-324395-v5uiuhih	64	7	a	a	DT
cord-324395-v5uiuhih	64	8	protein	protein	NN
cord-324395-v5uiuhih	64	9	can	can	MD
cord-324395-v5uiuhih	64	10	be	be	VB
cord-324395-v5uiuhih	64	11	conveniently	conveniently	RB
cord-324395-v5uiuhih	64	12	accessed	access	VBN
cord-324395-v5uiuhih	64	13	through	through	IN
cord-324395-v5uiuhih	64	14	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	64	15	's	's	POS
cord-324395-v5uiuhih	64	16	GUI	GUI	NNP
cord-324395-v5uiuhih	64	17	(	(	-LRB-
cord-324395-v5uiuhih	64	18	Additional	additional	JJ
cord-324395-v5uiuhih	64	19	file	file	NN
cord-324395-v5uiuhih	64	20	1	1	CD
cord-324395-v5uiuhih	64	21	:	:	:
cord-324395-v5uiuhih	64	22	Figure	figure	NN
cord-324395-v5uiuhih	64	23	S2	s2	NN
cord-324395-v5uiuhih	64	24	)	)	-RRB-
cord-324395-v5uiuhih	64	25	.	.	.
cord-324395-v5uiuhih	65	1	Below	below	RB
cord-324395-v5uiuhih	65	2	,	,	,
cord-324395-v5uiuhih	65	3	we	-PRON-	PRP
cord-324395-v5uiuhih	65	4	briefly	briefly	RB
cord-324395-v5uiuhih	65	5	describe	describe	VBP
cord-324395-v5uiuhih	65	6	each	each	DT
cord-324395-v5uiuhih	65	7	class	class	NN
cord-324395-v5uiuhih	65	8	.	.	.
cord-324395-v5uiuhih	66	1	Detailed	detailed	JJ
cord-324395-v5uiuhih	66	2	examples	example	NNS
cord-324395-v5uiuhih	66	3	for	for	IN
cord-324395-v5uiuhih	66	4	the	the	DT
cord-324395-v5uiuhih	66	5	usage	usage	NN
cord-324395-v5uiuhih	66	6	of	of	IN
cord-324395-v5uiuhih	66	7	each	each	DT
cord-324395-v5uiuhih	66	8	class	class	NN
cord-324395-v5uiuhih	66	9	are	be	VBP
cord-324395-v5uiuhih	66	10	provided	provide	VBN
cord-324395-v5uiuhih	66	11	in	in	IN
cord-324395-v5uiuhih	66	12	the	the	DT
cord-324395-v5uiuhih	66	13	Supporting	support	VBG
cord-324395-v5uiuhih	66	14	Information	information	NN
cord-324395-v5uiuhih	66	15	(	(	-LRB-
cord-324395-v5uiuhih	66	16	Additional	additional	JJ
cord-324395-v5uiuhih	66	17	file	file	NN
cord-324395-v5uiuhih	66	18	1	1	CD
cord-324395-v5uiuhih	66	19	:	:	:
cord-324395-v5uiuhih	66	20	Example	Example	NNP
cord-324395-v5uiuhih	66	21	S1	S1	NNP
cord-324395-v5uiuhih	66	22	)	)	-RRB-
cord-324395-v5uiuhih	66	23	section	section	NN
cord-324395-v5uiuhih	66	24	and	and	CC
cord-324395-v5uiuhih	66	25	on	on	IN
cord-324395-v5uiuhih	66	26	the	the	DT
cord-324395-v5uiuhih	66	27	Github	Github	NNP
cord-324395-v5uiuhih	66	28	repository	repository	NN
cord-324395-v5uiuhih	66	29	.	.	.
cord-324395-v5uiuhih	67	1	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	67	2	force	force	NN
cord-324395-v5uiuhih	67	3	field	field	NN
cord-324395-v5uiuhih	67	4	topology	topology	NN
cord-324395-v5uiuhih	67	5	and	and	CC
cord-324395-v5uiuhih	67	6	parameter	parameter	NN
cord-324395-v5uiuhih	67	7	files	file	NNS
cord-324395-v5uiuhih	67	8	are	be	VBP
cord-324395-v5uiuhih	67	9	parsed	parse	VBN
cord-324395-v5uiuhih	67	10	using	use	VBG
cord-324395-v5uiuhih	67	11	the	the	DT
cord-324395-v5uiuhih	67	12	CHARMMTopology	charmmtopology	NN
cord-324395-v5uiuhih	67	13	and	and	CC
cord-324395-v5uiuhih	67	14	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	67	15	-	-	HYPH
cord-324395-v5uiuhih	67	16	Parameters	parameter	NNS
cord-324395-v5uiuhih	67	17	classes	class	NNS
cord-324395-v5uiuhih	67	18	,	,	,
cord-324395-v5uiuhih	67	19	respectively	respectively	RB
cord-324395-v5uiuhih	67	20	.	.	.
cord-324395-v5uiuhih	68	1	The	the	DT
cord-324395-v5uiuhih	68	2	data	data	NN
cord-324395-v5uiuhih	68	3	is	be	VBZ
cord-324395-v5uiuhih	68	4	stored	store	VBN
cord-324395-v5uiuhih	68	5	in	in	IN
cord-324395-v5uiuhih	68	6	a	a	DT
cord-324395-v5uiuhih	68	7	dictionary	dictionary	NN
cord-324395-v5uiuhih	68	8	for	for	IN
cord-324395-v5uiuhih	68	9	a	a	DT
cord-324395-v5uiuhih	68	10	quick	quick	JJ
cord-324395-v5uiuhih	68	11	and	and	CC
cord-324395-v5uiuhih	68	12	easy	easy	JJ
cord-324395-v5uiuhih	68	13	access	access	NN
cord-324395-v5uiuhih	68	14	.	.	.
cord-324395-v5uiuhih	69	1	The	the	DT
cord-324395-v5uiuhih	69	2	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	69	3	-	-	HYPH
cord-324395-v5uiuhih	69	4	Topology	topology	NN
cord-324395-v5uiuhih	69	5	class	class	NN
cord-324395-v5uiuhih	69	6	creates	create	VBZ
cord-324395-v5uiuhih	69	7	and	and	CC
cord-324395-v5uiuhih	69	8	stores	store	NNS
cord-324395-v5uiuhih	69	9	an	an	DT
cord-324395-v5uiuhih	69	10	additional	additional	JJ
cord-324395-v5uiuhih	69	11	dictionary	dictionary	NN
cord-324395-v5uiuhih	69	12	for	for	IN
cord-324395-v5uiuhih	69	13	looking	look	VBG
cord-324395-v5uiuhih	69	14	up	up	RP
cord-324395-v5uiuhih	69	15	patches	patch	NNS
cord-324395-v5uiuhih	69	16	.	.	.
cord-324395-v5uiuhih	70	1	The	the	DT
cord-324395-v5uiuhih	70	2	patches	patch	NNS
cord-324395-v5uiuhih	70	3	are	be	VBP
cord-324395-v5uiuhih	70	4	used	use	VBN
cord-324395-v5uiuhih	70	5	to	to	TO
cord-324395-v5uiuhih	70	6	define	define	VB
cord-324395-v5uiuhih	70	7	the	the	DT
cord-324395-v5uiuhih	70	8	glycosidic	glycosidic	JJ
cord-324395-v5uiuhih	70	9	bonds	bond	NNS
cord-324395-v5uiuhih	70	10	between	between	IN
cord-324395-v5uiuhih	70	11	saccharide	saccharide	NN
cord-324395-v5uiuhih	70	12	units	unit	NNS
cord-324395-v5uiuhih	70	13	and	and	CC
cord-324395-v5uiuhih	70	14	are	be	VBP
cord-324395-v5uiuhih	70	15	required	require	VBN
cord-324395-v5uiuhih	70	16	for	for	IN
cord-324395-v5uiuhih	70	17	modification	modification	NN
cord-324395-v5uiuhih	70	18	(	(	-LRB-
cord-324395-v5uiuhih	70	19	e.g.	e.g.	RB
cord-324395-v5uiuhih	70	20	,	,	,
cord-324395-v5uiuhih	70	21	deleting	delete	VBG
cord-324395-v5uiuhih	70	22	atoms	atom	NNS
cord-324395-v5uiuhih	70	23	)	)	-RRB-
cord-324395-v5uiuhih	70	24	.	.	.
cord-324395-v5uiuhih	71	1	The	the	DT
cord-324395-v5uiuhih	71	2	Molecule	Molecule	NNP
cord-324395-v5uiuhih	71	3	class	class	NN
cord-324395-v5uiuhih	71	4	is	be	VBZ
cord-324395-v5uiuhih	71	5	used	use	VBN
cord-324395-v5uiuhih	71	6	for	for	IN
cord-324395-v5uiuhih	71	7	storing	store	VBG
cord-324395-v5uiuhih	71	8	the	the	DT
cord-324395-v5uiuhih	71	9	coordinates	coordinate	NNS
cord-324395-v5uiuhih	71	10	(	(	-LRB-
cord-324395-v5uiuhih	71	11	Prody	Prody	NNP
cord-324395-v5uiuhih	71	12	's	's	POS
cord-324395-v5uiuhih	71	13	AtomGroup	AtomGroup	NNP
cord-324395-v5uiuhih	71	14	)	)	-RRB-
cord-324395-v5uiuhih	71	15	and	and	CC
cord-324395-v5uiuhih	71	16	connectivity	connectivity	NN
cord-324395-v5uiuhih	71	17	(	(	-LRB-
cord-324395-v5uiuhih	71	18	NetworkX	NetworkX	NNP
cord-324395-v5uiuhih	71	19	graph	graph	NN
cord-324395-v5uiuhih	71	20	)	)	-RRB-
cord-324395-v5uiuhih	71	21	of	of	IN
cord-324395-v5uiuhih	71	22	a	a	DT
cord-324395-v5uiuhih	71	23	molecule	molecule	NN
cord-324395-v5uiuhih	71	24	.	.	.
cord-324395-v5uiuhih	72	1	The	the	DT
cord-324395-v5uiuhih	72	2	bonds	bond	NNS
cord-324395-v5uiuhih	72	3	,	,	,
cord-324395-v5uiuhih	72	4	angles	angle	NNS
cord-324395-v5uiuhih	72	5	and	and	CC
cord-324395-v5uiuhih	72	6	dihedrals	dihedral	NNS
cord-324395-v5uiuhih	72	7	are	be	VBP
cord-324395-v5uiuhih	72	8	assigned	assign	VBN
cord-324395-v5uiuhih	72	9	either	either	CC
cord-324395-v5uiuhih	72	10	by	by	IN
cord-324395-v5uiuhih	72	11	the	the	DT
cord-324395-v5uiuhih	72	12	user	user	NN
cord-324395-v5uiuhih	72	13	or	or	CC
cord-324395-v5uiuhih	72	14	automatically	automatically	RB
cord-324395-v5uiuhih	72	15	based	base	VBN
cord-324395-v5uiuhih	72	16	on	on	IN
cord-324395-v5uiuhih	72	17	the	the	DT
cord-324395-v5uiuhih	72	18	distances	distance	NNS
cord-324395-v5uiuhih	72	19	between	between	IN
cord-324395-v5uiuhih	72	20	atoms	atom	NNS
cord-324395-v5uiuhih	72	21	.	.	.
cord-324395-v5uiuhih	73	1	The	the	DT
cord-324395-v5uiuhih	73	2	molecule	molecule	NN
cord-324395-v5uiuhih	73	3	's	's	POS
cord-324395-v5uiuhih	73	4	connectivity	connectivity	NN
cord-324395-v5uiuhih	73	5	is	be	VBZ
cord-324395-v5uiuhih	73	6	saved	save	VBN
cord-324395-v5uiuhih	73	7	as	as	IN
cord-324395-v5uiuhih	73	8	a	a	DT
cord-324395-v5uiuhih	73	9	directed	direct	VBN
cord-324395-v5uiuhih	73	10	graph	graph	NN
cord-324395-v5uiuhih	73	11	.	.	.
cord-324395-v5uiuhih	74	1	The	the	DT
cord-324395-v5uiuhih	74	2	user	user	NN
cord-324395-v5uiuhih	74	3	can	can	MD
cord-324395-v5uiuhih	74	4	provide	provide	VB
cord-324395-v5uiuhih	74	5	the	the	DT
cord-324395-v5uiuhih	74	6	root	root	NN
cord-324395-v5uiuhih	74	7	atom	atom	NN
cord-324395-v5uiuhih	74	8	to	to	TO
cord-324395-v5uiuhih	74	9	define	define	VB
cord-324395-v5uiuhih	74	10	the	the	DT
cord-324395-v5uiuhih	74	11	direction	direction	NN
cord-324395-v5uiuhih	74	12	of	of	IN
cord-324395-v5uiuhih	74	13	the	the	DT
cord-324395-v5uiuhih	74	14	connectivity	connectivity	NN
cord-324395-v5uiuhih	74	15	graph	graph	NN
cord-324395-v5uiuhih	74	16	;	;	:
cord-324395-v5uiuhih	74	17	by	by	IN
cord-324395-v5uiuhih	74	18	default	default	NN
cord-324395-v5uiuhih	74	19	,	,	,
cord-324395-v5uiuhih	74	20	the	the	DT
cord-324395-v5uiuhih	74	21	first	first	JJ
cord-324395-v5uiuhih	74	22	atom	atom	NN
cord-324395-v5uiuhih	74	23	of	of	IN
cord-324395-v5uiuhih	74	24	the	the	DT
cord-324395-v5uiuhih	74	25	molecule	molecule	NN
cord-324395-v5uiuhih	74	26	is	be	VBZ
cord-324395-v5uiuhih	74	27	chosen	choose	VBN
cord-324395-v5uiuhih	74	28	.	.	.
cord-324395-v5uiuhih	75	1	Ring	ring	NN
cord-324395-v5uiuhih	75	2	structures	structure	NNS
cord-324395-v5uiuhih	75	3	are	be	VBP
cord-324395-v5uiuhih	75	4	automatically	automatically	RB
cord-324395-v5uiuhih	75	5	detected	detect	VBN
cord-324395-v5uiuhih	75	6	identifying	identify	VBG
cord-324395-v5uiuhih	75	7	all	all	DT
cord-324395-v5uiuhih	75	8	rotatable	rotatable	JJ
cord-324395-v5uiuhih	75	9	torsional	torsional	JJ
cord-324395-v5uiuhih	75	10	angles	angle	NNS
cord-324395-v5uiuhih	75	11	that	that	WDT
cord-324395-v5uiuhih	75	12	are	be	VBP
cord-324395-v5uiuhih	75	13	not	not	RB
cord-324395-v5uiuhih	75	14	part	part	NN
cord-324395-v5uiuhih	75	15	of	of	IN
cord-324395-v5uiuhih	75	16	a	a	DT
cord-324395-v5uiuhih	75	17	cycle	cycle	NN
cord-324395-v5uiuhih	75	18	.	.	.
cord-324395-v5uiuhih	76	1	These	these	DT
cord-324395-v5uiuhih	76	2	torsional	torsional	JJ
cord-324395-v5uiuhih	76	3	angles	angle	NNS
cord-324395-v5uiuhih	76	4	can	can	MD
cord-324395-v5uiuhih	76	5	be	be	VB
cord-324395-v5uiuhih	76	6	measured	measure	VBN
cord-324395-v5uiuhih	76	7	,	,	,
cord-324395-v5uiuhih	76	8	set	set	VBN
cord-324395-v5uiuhih	76	9	to	to	IN
cord-324395-v5uiuhih	76	10	a	a	DT
cord-324395-v5uiuhih	76	11	specific	specific	JJ
cord-324395-v5uiuhih	76	12	value	value	NN
cord-324395-v5uiuhih	76	13	or	or	CC
cord-324395-v5uiuhih	76	14	rotated	rotate	VBN
cord-324395-v5uiuhih	76	15	by	by	IN
cord-324395-v5uiuhih	76	16	a	a	DT
cord-324395-v5uiuhih	76	17	given	give	VBN
cord-324395-v5uiuhih	76	18	amount	amount	NN
cord-324395-v5uiuhih	76	19	.	.	.
cord-324395-v5uiuhih	77	1	An	an	DT
cord-324395-v5uiuhih	77	2	interresidue	interresidue	JJ
cord-324395-v5uiuhih	77	3	graph	graph	NN
cord-324395-v5uiuhih	77	4	is	be	VBZ
cord-324395-v5uiuhih	77	5	also	also	RB
cord-324395-v5uiuhih	77	6	built	build	VBN
cord-324395-v5uiuhih	77	7	in	in	IN
cord-324395-v5uiuhih	77	8	order	order	NN
cord-324395-v5uiuhih	77	9	to	to	TO
cord-324395-v5uiuhih	77	10	quickly	quickly	RB
cord-324395-v5uiuhih	77	11	parse	parse	VB
cord-324395-v5uiuhih	77	12	through	through	RP
cord-324395-v5uiuhih	77	13	a	a	DT
cord-324395-v5uiuhih	77	14	molecule	molecule	NN
cord-324395-v5uiuhih	77	15	composed	compose	VBN
cord-324395-v5uiuhih	77	16	of	of	IN
cord-324395-v5uiuhih	77	17	several	several	JJ
cord-324395-v5uiuhih	77	18	residues	residue	NNS
cord-324395-v5uiuhih	77	19	.	.	.
cord-324395-v5uiuhih	78	1	The	the	DT
cord-324395-v5uiuhih	78	2	MoleculeBuilder	MoleculeBuilder	NNP
cord-324395-v5uiuhih	78	3	class	class	NN
cord-324395-v5uiuhih	78	4	is	be	VBZ
cord-324395-v5uiuhih	78	5	employed	employ	VBN
cord-324395-v5uiuhih	78	6	for	for	IN
cord-324395-v5uiuhih	78	7	building	building	NN
cord-324395-v5uiuhih	78	8	and	and	CC
cord-324395-v5uiuhih	78	9	editing	editing	NN
cord-324395-v5uiuhih	78	10	molecules	molecule	NNS
cord-324395-v5uiuhih	78	11	.	.	.
cord-324395-v5uiuhih	79	1	Information	information	NN
cord-324395-v5uiuhih	79	2	about	about	IN
cord-324395-v5uiuhih	79	3	the	the	DT
cord-324395-v5uiuhih	79	4	connectivity	connectivity	NN
cord-324395-v5uiuhih	79	5	and	and	CC
cord-324395-v5uiuhih	79	6	atoms	atom	NNS
cord-324395-v5uiuhih	79	7	of	of	IN
cord-324395-v5uiuhih	79	8	a	a	DT
cord-324395-v5uiuhih	79	9	molecule	molecule	NN
cord-324395-v5uiuhih	79	10	are	be	VBP
cord-324395-v5uiuhih	79	11	extracted	extract	VBN
cord-324395-v5uiuhih	79	12	from	from	IN
cord-324395-v5uiuhih	79	13	a	a	DT
cord-324395-v5uiuhih	79	14	CHARMMTopology	charmmtopology	NN
cord-324395-v5uiuhih	79	15	instance	instance	NN
cord-324395-v5uiuhih	79	16	.	.	.
cord-324395-v5uiuhih	80	1	This	this	DT
cord-324395-v5uiuhih	80	2	class	class	NN
cord-324395-v5uiuhih	80	3	allows	allow	VBZ
cord-324395-v5uiuhih	80	4	for	for	IN
cord-324395-v5uiuhih	80	5	the	the	DT
cord-324395-v5uiuhih	80	6	initialization	initialization	NN
cord-324395-v5uiuhih	80	7	of	of	IN
cord-324395-v5uiuhih	80	8	a	a	DT
cord-324395-v5uiuhih	80	9	Prody	Prody	NNP
cord-324395-v5uiuhih	80	10	residue	residue	NN
cord-324395-v5uiuhih	80	11	(	(	-LRB-
cord-324395-v5uiuhih	80	12	AtomGroup	AtomGroup	NNP
cord-324395-v5uiuhih	80	13	)	)	-RRB-
cord-324395-v5uiuhih	80	14	.	.	.
cord-324395-v5uiuhih	81	1	Applying	apply	VBG
cord-324395-v5uiuhih	81	2	a	a	DT
cord-324395-v5uiuhih	81	3	patch	patch	NN
cord-324395-v5uiuhih	81	4	(	(	-LRB-
cord-324395-v5uiuhih	81	5	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	81	6	)	)	-RRB-
cord-324395-v5uiuhih	81	7	will	will	MD
cord-324395-v5uiuhih	81	8	modify	modify	VB
cord-324395-v5uiuhih	81	9	one	one	CD
cord-324395-v5uiuhih	81	10	or	or	CC
cord-324395-v5uiuhih	81	11	several	several	JJ
cord-324395-v5uiuhih	81	12	residues	residue	NNS
cord-324395-v5uiuhih	81	13	.	.	.
cord-324395-v5uiuhih	82	1	For	for	IN
cord-324395-v5uiuhih	82	2	glycans	glycan	NNS
cord-324395-v5uiuhih	82	3	,	,	,
cord-324395-v5uiuhih	82	4	patches	patch	NNS
cord-324395-v5uiuhih	82	5	are	be	VBP
cord-324395-v5uiuhih	82	6	typically	typically	RB
cord-324395-v5uiuhih	82	7	used	use	VBN
cord-324395-v5uiuhih	82	8	to	to	TO
cord-324395-v5uiuhih	82	9	define	define	VB
cord-324395-v5uiuhih	82	10	the	the	DT
cord-324395-v5uiuhih	82	11	glycosidic	glycosidic	JJ
cord-324395-v5uiuhih	82	12	linkage	linkage	NN
cord-324395-v5uiuhih	82	13	.	.	.
cord-324395-v5uiuhih	83	1	MoleculeBuilder	MoleculeBuilder	NNP
cord-324395-v5uiuhih	83	2	interfaces	interface	NNS
cord-324395-v5uiuhih	83	3	directly	directly	RB
cord-324395-v5uiuhih	83	4	with	with	IN
cord-324395-v5uiuhih	83	5	the	the	DT
cord-324395-v5uiuhih	83	6	Prody	Prody	NNP
cord-324395-v5uiuhih	83	7	AtomGroup	AtomGroup	NNP
cord-324395-v5uiuhih	83	8	and	and	CC
cord-324395-v5uiuhih	83	9	returns	return	VBZ
cord-324395-v5uiuhih	83	10	all	all	PDT
cord-324395-v5uiuhih	83	11	the	the	DT
cord-324395-v5uiuhih	83	12	information	information	NN
cord-324395-v5uiuhih	83	13	required	require	VBN
cord-324395-v5uiuhih	83	14	for	for	IN
cord-324395-v5uiuhih	83	15	creating	create	VBG
cord-324395-v5uiuhih	83	16	a	a	DT
cord-324395-v5uiuhih	83	17	Molecule	Molecule	NNP
cord-324395-v5uiuhih	83	18	instance	instance	NN
cord-324395-v5uiuhih	83	19	.	.	.
cord-324395-v5uiuhih	84	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	84	2	class	class	NN
cord-324395-v5uiuhih	84	3	was	be	VBD
cord-324395-v5uiuhih	84	4	designed	design	VBN
cord-324395-v5uiuhih	84	5	to	to	TO
cord-324395-v5uiuhih	84	6	deal	deal	VB
cord-324395-v5uiuhih	84	7	specifically	specifically	RB
cord-324395-v5uiuhih	84	8	with	with	IN
cord-324395-v5uiuhih	84	9	glycans	glycan	NNS
cord-324395-v5uiuhih	84	10	/	/	SYM
cord-324395-v5uiuhih	84	11	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	84	12	.	.	.
cord-324395-v5uiuhih	85	1	It	-PRON-	PRP
cord-324395-v5uiuhih	85	2	can	can	MD
cord-324395-v5uiuhih	85	3	import	import	VB
cord-324395-v5uiuhih	85	4	a	a	DT
cord-324395-v5uiuhih	85	5	PDB	PDB	NNP
cord-324395-v5uiuhih	85	6	file	file	NN
cord-324395-v5uiuhih	85	7	and	and	CC
cord-324395-v5uiuhih	85	8	automatically	automatically	RB
cord-324395-v5uiuhih	85	9	extract	extract	VB
cord-324395-v5uiuhih	85	10	all	all	PDT
cord-324395-v5uiuhih	85	11	the	the	DT
cord-324395-v5uiuhih	85	12	Oand	Oand	NNP
cord-324395-v5uiuhih	85	13	N	N	NNP
cord-324395-v5uiuhih	85	14	-	-	HYPH
cord-324395-v5uiuhih	85	15	linked	link	VBN
cord-324395-v5uiuhih	85	16	sequons	sequon	NNS
cord-324395-v5uiuhih	85	17	and	and	CC
cord-324395-v5uiuhih	85	18	associated	associate	VBD
cord-324395-v5uiuhih	85	19	atoms	atom	NNS
cord-324395-v5uiuhih	85	20	.	.	.
cord-324395-v5uiuhih	86	1	Each	each	DT
cord-324395-v5uiuhih	86	2	glycan	glycan	NN
cord-324395-v5uiuhih	86	3	is	be	VBZ
cord-324395-v5uiuhih	86	4	saved	save	VBN
cord-324395-v5uiuhih	86	5	as	as	IN
cord-324395-v5uiuhih	86	6	a	a	DT
cord-324395-v5uiuhih	86	7	Molecule	Molecule	NNP
cord-324395-v5uiuhih	86	8	instance	instance	NN
cord-324395-v5uiuhih	86	9	in	in	IN
cord-324395-v5uiuhih	86	10	a	a	DT
cord-324395-v5uiuhih	86	11	dictionary	dictionary	NN
cord-324395-v5uiuhih	86	12	.	.	.
cord-324395-v5uiuhih	87	1	The	the	DT
cord-324395-v5uiuhih	87	2	key	key	NN
cord-324395-v5uiuhih	87	3	of	of	IN
cord-324395-v5uiuhih	87	4	the	the	DT
cord-324395-v5uiuhih	87	5	dictionary	dictionary	NN
cord-324395-v5uiuhih	87	6	is	be	VBZ
cord-324395-v5uiuhih	87	7	the	the	DT
cord-324395-v5uiuhih	87	8	residue	residue	NN
cord-324395-v5uiuhih	87	9	number	number	NN
cord-324395-v5uiuhih	87	10	and	and	CC
cord-324395-v5uiuhih	87	11	chain	chain	NN
cord-324395-v5uiuhih	87	12	of	of	IN
cord-324395-v5uiuhih	87	13	the	the	DT
cord-324395-v5uiuhih	87	14	sequon	sequon	NN
cord-324395-v5uiuhih	87	15	.	.	.
cord-324395-v5uiuhih	88	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	88	2	uses	use	VBZ
cord-324395-v5uiuhih	88	3	an	an	DT
cord-324395-v5uiuhih	88	4	internal	internal	JJ
cord-324395-v5uiuhih	88	5	text	text	NN
cord-324395-v5uiuhih	88	6	representation	representation	NN
cord-324395-v5uiuhih	88	7	for	for	IN
cord-324395-v5uiuhih	88	8	storing	store	VBG
cord-324395-v5uiuhih	88	9	a	a	DT
cord-324395-v5uiuhih	88	10	topology	topology	NN
cord-324395-v5uiuhih	88	11	tree	tree	NN
cord-324395-v5uiuhih	88	12	for	for	IN
cord-324395-v5uiuhih	88	13	each	each	DT
cord-324395-v5uiuhih	88	14	glycan	glycan	NN
cord-324395-v5uiuhih	88	15	structure	structure	NN
cord-324395-v5uiuhih	88	16	.	.	.
cord-324395-v5uiuhih	89	1	These	these	DT
cord-324395-v5uiuhih	89	2	trees	tree	NNS
cord-324395-v5uiuhih	89	3	describe	describe	VBP
cord-324395-v5uiuhih	89	4	the	the	DT
cord-324395-v5uiuhih	89	5	connectivity	connectivity	NN
cord-324395-v5uiuhih	89	6	and	and	CC
cord-324395-v5uiuhih	89	7	saccharide	saccharide	NN
cord-324395-v5uiuhih	89	8	units	unit	NNS
cord-324395-v5uiuhih	89	9	that	that	WDT
cord-324395-v5uiuhih	89	10	compose	compose	VBP
cord-324395-v5uiuhih	89	11	a	a	DT
cord-324395-v5uiuhih	89	12	polysaccharide	polysaccharide	NN
cord-324395-v5uiuhih	89	13	.	.	.
cord-324395-v5uiuhih	90	1	A	a	DT
cord-324395-v5uiuhih	90	2	library	library	NN
cord-324395-v5uiuhih	90	3	of	of	IN
cord-324395-v5uiuhih	90	4	these	these	DT
cord-324395-v5uiuhih	90	5	structures	structure	NNS
cord-324395-v5uiuhih	90	6	can	can	MD
cord-324395-v5uiuhih	90	7	be	be	VB
cord-324395-v5uiuhih	90	8	imported	import	VBN
cord-324395-v5uiuhih	90	9	into	into	IN
cord-324395-v5uiuhih	90	10	a	a	DT
cord-324395-v5uiuhih	90	11	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	90	12	instance	instance	NN
cord-324395-v5uiuhih	90	13	or	or	CC
cord-324395-v5uiuhih	90	14	saved	save	VBD
cord-324395-v5uiuhih	90	15	as	as	IN
cord-324395-v5uiuhih	90	16	a	a	DT
cord-324395-v5uiuhih	90	17	simple	simple	JJ
cord-324395-v5uiuhih	90	18	text	text	NN
cord-324395-v5uiuhih	90	19	file	file	NN
cord-324395-v5uiuhih	90	20	or	or	CC
cord-324395-v5uiuhih	90	21	a	a	DT
cord-324395-v5uiuhih	90	22	SQL	SQL	NNP
cord-324395-v5uiuhih	90	23	database	database	NN
cord-324395-v5uiuhih	90	24	.	.	.
cord-324395-v5uiuhih	91	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	91	2	can	can	MD
cord-324395-v5uiuhih	91	3	then	then	RB
cord-324395-v5uiuhih	91	4	compare	compare	VB
cord-324395-v5uiuhih	91	5	the	the	DT
cord-324395-v5uiuhih	91	6	extracted	extract	VBN
cord-324395-v5uiuhih	91	7	connectivity	connectivity	NN
cord-324395-v5uiuhih	91	8	tree	tree	NN
cord-324395-v5uiuhih	91	9	to	to	IN
cord-324395-v5uiuhih	91	10	the	the	DT
cord-324395-v5uiuhih	91	11	internal	internal	JJ
cord-324395-v5uiuhih	91	12	dataset	dataset	NN
cord-324395-v5uiuhih	91	13	of	of	IN
cord-324395-v5uiuhih	91	14	known	know	VBN
cord-324395-v5uiuhih	91	15	glycans	glycan	NNS
cord-324395-v5uiuhih	91	16	to	to	TO
cord-324395-v5uiuhih	91	17	identify	identify	VB
cord-324395-v5uiuhih	91	18	them	-PRON-	PRP
cord-324395-v5uiuhih	91	19	based	base	VBN
cord-324395-v5uiuhih	91	20	on	on	IN
cord-324395-v5uiuhih	91	21	the	the	DT
cord-324395-v5uiuhih	91	22	glycosidic	glycosidic	JJ
cord-324395-v5uiuhih	91	23	linkage	linkage	NN
cord-324395-v5uiuhih	91	24	and	and	CC
cord-324395-v5uiuhih	91	25	residue	residue	NN
cord-324395-v5uiuhih	91	26	type	type	NN
cord-324395-v5uiuhih	91	27	.	.	.
cord-324395-v5uiuhih	92	1	We	-PRON-	PRP
cord-324395-v5uiuhih	92	2	do	do	VBP
cord-324395-v5uiuhih	92	3	note	note	VB
cord-324395-v5uiuhih	92	4	that	that	IN
cord-324395-v5uiuhih	92	5	chemical	chemical	JJ
cord-324395-v5uiuhih	92	6	post	post	NN
cord-324395-v5uiuhih	92	7	-	-	NNS
cord-324395-v5uiuhih	92	8	modifications	modification	NNS
cord-324395-v5uiuhih	92	9	of	of	IN
cord-324395-v5uiuhih	92	10	glycans	glycan	NNS
cord-324395-v5uiuhih	92	11	are	be	VBP
cord-324395-v5uiuhih	92	12	not	not	RB
cord-324395-v5uiuhih	92	13	supported	support	VBN
cord-324395-v5uiuhih	92	14	in	in	IN
cord-324395-v5uiuhih	92	15	the	the	DT
cord-324395-v5uiuhih	92	16	current	current	JJ
cord-324395-v5uiuhih	92	17	version	version	NN
cord-324395-v5uiuhih	92	18	.	.	.
cord-324395-v5uiuhih	93	1	Glycans	glycan	NNS
cord-324395-v5uiuhih	93	2	can	can	MD
cord-324395-v5uiuhih	93	3	be	be	VB
cord-324395-v5uiuhih	93	4	extended	extend	VBN
cord-324395-v5uiuhih	93	5	,	,	,
cord-324395-v5uiuhih	93	6	trimmed	trim	VBN
cord-324395-v5uiuhih	93	7	or	or	CC
cord-324395-v5uiuhih	93	8	modeled	model	VBN
cord-324395-v5uiuhih	93	9	ab	ab	NN
cord-324395-v5uiuhih	93	10	initio	initio	NN
cord-324395-v5uiuhih	93	11	.	.	.
cord-324395-v5uiuhih	94	1	This	this	DT
cord-324395-v5uiuhih	94	2	can	can	MD
cord-324395-v5uiuhih	94	3	be	be	VB
cord-324395-v5uiuhih	94	4	achieved	achieve	VBN
cord-324395-v5uiuhih	94	5	by	by	IN
cord-324395-v5uiuhih	94	6	providing	provide	VBG
cord-324395-v5uiuhih	94	7	the	the	DT
cord-324395-v5uiuhih	94	8	identification	identification	NN
cord-324395-v5uiuhih	94	9	of	of	IN
cord-324395-v5uiuhih	94	10	a	a	DT
cord-324395-v5uiuhih	94	11	known	know	VBN
cord-324395-v5uiuhih	94	12	oligosaccharide	oligosaccharide	NN
cord-324395-v5uiuhih	94	13	(	(	-LRB-
cord-324395-v5uiuhih	94	14	in	in	IN
cord-324395-v5uiuhih	94	15	the	the	DT
cord-324395-v5uiuhih	94	16	library	library	NN
cord-324395-v5uiuhih	94	17	)	)	-RRB-
cord-324395-v5uiuhih	94	18	or	or	CC
cord-324395-v5uiuhih	94	19	with	with	IN
cord-324395-v5uiuhih	94	20	a	a	DT
cord-324395-v5uiuhih	94	21	topology	topology	NN
cord-324395-v5uiuhih	94	22	tree	tree	NN
cord-324395-v5uiuhih	94	23	describing	describe	VBG
cord-324395-v5uiuhih	94	24	the	the	DT
cord-324395-v5uiuhih	94	25	connectivity	connectivity	NN
cord-324395-v5uiuhih	94	26	and	and	CC
cord-324395-v5uiuhih	94	27	glycan	glycan	NN
cord-324395-v5uiuhih	94	28	units	unit	NNS
cord-324395-v5uiuhih	94	29	of	of	IN
cord-324395-v5uiuhih	94	30	the	the	DT
cord-324395-v5uiuhih	94	31	desired	desire	VBN
cord-324395-v5uiuhih	94	32	oligosaccharide	oligosaccharide	NN
cord-324395-v5uiuhih	94	33	.	.	.
cord-324395-v5uiuhih	95	1	The	the	DT
cord-324395-v5uiuhih	95	2	topology	topology	NN
cord-324395-v5uiuhih	95	3	tree	tree	NN
cord-324395-v5uiuhih	95	4	is	be	VBZ
cord-324395-v5uiuhih	95	5	a	a	DT
cord-324395-v5uiuhih	95	6	string	string	NN
cord-324395-v5uiuhih	95	7	representation	representation	NN
cord-324395-v5uiuhih	95	8	of	of	IN
cord-324395-v5uiuhih	95	9	a	a	DT
cord-324395-v5uiuhih	95	10	glycan	glycan	NN
cord-324395-v5uiuhih	95	11	.	.	.
cord-324395-v5uiuhih	96	1	Sampler	sampler	NN
cord-324395-v5uiuhih	96	2	class	class	NN
cord-324395-v5uiuhih	96	3	implements	implement	VBZ
cord-324395-v5uiuhih	96	4	a	a	DT
cord-324395-v5uiuhih	96	5	genetic	genetic	JJ
cord-324395-v5uiuhih	96	6	algorithm	algorithm	NN
cord-324395-v5uiuhih	96	7	for	for	IN
cord-324395-v5uiuhih	96	8	removing	remove	VBG
cord-324395-v5uiuhih	96	9	clashes	clash	NNS
cord-324395-v5uiuhih	96	10	between	between	IN
cord-324395-v5uiuhih	96	11	Molecules	molecule	NNS
cord-324395-v5uiuhih	96	12	and	and	CC
cord-324395-v5uiuhih	96	13	their	-PRON-	PRP$
cord-324395-v5uiuhih	96	14	environment	environment	NN
cord-324395-v5uiuhih	96	15	(	(	-LRB-
cord-324395-v5uiuhih	96	16	e.g.	e.g.	RB
cord-324395-v5uiuhih	96	17	,	,	,
cord-324395-v5uiuhih	96	18	protein	protein	NN
cord-324395-v5uiuhih	96	19	)	)	-RRB-
cord-324395-v5uiuhih	96	20	.	.	.
cord-324395-v5uiuhih	97	1	The	the	DT
cord-324395-v5uiuhih	97	2	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	97	3	force	force	NN
cord-324395-v5uiuhih	97	4	field	field	NN
cord-324395-v5uiuhih	97	5	energy	energy	NN
cord-324395-v5uiuhih	97	6	function	function	NN
cord-324395-v5uiuhih	97	7	for	for	IN
cord-324395-v5uiuhih	97	8	the	the	DT
cord-324395-v5uiuhih	97	9	torsional	torsional	JJ
cord-324395-v5uiuhih	97	10	angles	angle	NNS
cord-324395-v5uiuhih	97	11	will	will	MD
cord-324395-v5uiuhih	97	12	be	be	VB
cord-324395-v5uiuhih	97	13	used	use	VBN
cord-324395-v5uiuhih	97	14	for	for	IN
cord-324395-v5uiuhih	97	15	biasing	bias	VBG
cord-324395-v5uiuhih	97	16	Table	Table	NNP
cord-324395-v5uiuhih	97	17	1	1	CD
cord-324395-v5uiuhih	97	18	List	list	NN
cord-324395-v5uiuhih	97	19	of	of	IN
cord-324395-v5uiuhih	97	20	functionalities	functionality	NNS
cord-324395-v5uiuhih	97	21	offered	offer	VBN
cord-324395-v5uiuhih	97	22	by	by	IN
cord-324395-v5uiuhih	97	23	the	the	DT
cord-324395-v5uiuhih	97	24	available	available	JJ
cord-324395-v5uiuhih	97	25	software	software	NN
cord-324395-v5uiuhih	97	26	and	and	CC
cord-324395-v5uiuhih	97	27	webservers	webserver	NNS
cord-324395-v5uiuhih	97	28	for	for	IN
cord-324395-v5uiuhih	97	29	modeling	model	VBG
cord-324395-v5uiuhih	97	30	glycans	glycan	NNS
cord-324395-v5uiuhih	97	31	.	.	.
cord-324395-v5uiuhih	98	1	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	98	2	-	-	HYPH
cord-324395-v5uiuhih	98	3	GUI	GUI	NNP
cord-324395-v5uiuhih	98	4	includes	include	VBZ
cord-324395-v5uiuhih	98	5	Glycan	Glycan	NNP
cord-324395-v5uiuhih	98	6	Reader	Reader	NNP
cord-324395-v5uiuhih	98	7	and	and	CC
cord-324395-v5uiuhih	98	8	Modelers	Modelers	NNPS
cord-324395-v5uiuhih	98	9	,	,	,
cord-324395-v5uiuhih	98	10	as	as	RB
cord-324395-v5uiuhih	98	11	well	well	RB
cord-324395-v5uiuhih	98	12	as	as	IN
cord-324395-v5uiuhih	98	13	the	the	DT
cord-324395-v5uiuhih	98	14	glycolipid	glycolipid	NNP
cord-324395-v5uiuhih	98	15	and	and	CC
cord-324395-v5uiuhih	98	16	LPS	LPS	NNP
cord-324395-v5uiuhih	98	17	modelers	modeler	NNS
cord-324395-v5uiuhih	98	18	the	the	DT
cord-324395-v5uiuhih	98	19	random	random	JJ
cord-324395-v5uiuhih	98	20	number	number	NN
cord-324395-v5uiuhih	98	21	generator	generator	NN
cord-324395-v5uiuhih	98	22	and	and	CC
cord-324395-v5uiuhih	98	23	to	to	TO
cord-324395-v5uiuhih	98	24	sample	sample	VB
cord-324395-v5uiuhih	98	25	more	more	RBR
cord-324395-v5uiuhih	98	26	energetically	energetically	RB
cord-324395-v5uiuhih	98	27	favorable	favorable	JJ
cord-324395-v5uiuhih	98	28	torsional	torsional	JJ
cord-324395-v5uiuhih	98	29	angles	angle	NNS
cord-324395-v5uiuhih	98	30	[	[	-LRB-
cord-324395-v5uiuhih	98	31	22	22	CD
cord-324395-v5uiuhih	98	32	]	]	-RRB-
cord-324395-v5uiuhih	98	33	.	.	.
cord-324395-v5uiuhih	99	1	The	the	DT
cord-324395-v5uiuhih	99	2	generation	generation	NN
cord-324395-v5uiuhih	99	3	of	of	IN
cord-324395-v5uiuhih	99	4	the	the	DT
cord-324395-v5uiuhih	99	5	initial	initial	JJ
cord-324395-v5uiuhih	99	6	population	population	NN
cord-324395-v5uiuhih	99	7	can	can	MD
cord-324395-v5uiuhih	99	8	be	be	VB
cord-324395-v5uiuhih	99	9	skewed	skewed	JJ
cord-324395-v5uiuhih	99	10	towards	towards	IN
cord-324395-v5uiuhih	99	11	the	the	DT
cord-324395-v5uiuhih	99	12	common	common	JJ
cord-324395-v5uiuhih	99	13	co	co	NN
cord-324395-v5uiuhih	99	14	-	-	NN
cord-324395-v5uiuhih	99	15	dependence	dependence	NN
cord-324395-v5uiuhih	99	16	of	of	IN
cord-324395-v5uiuhih	99	17	angles	angle	NNS
cord-324395-v5uiuhih	99	18	.	.	.
cord-324395-v5uiuhih	100	1	The	the	DT
cord-324395-v5uiuhih	100	2	fast	fast	JJ
cord-324395-v5uiuhih	100	3	clash	clash	NN
cord-324395-v5uiuhih	100	4	detection	detection	NN
cord-324395-v5uiuhih	100	5	algorithm	algorithm	NN
cord-324395-v5uiuhih	100	6	is	be	VBZ
cord-324395-v5uiuhih	100	7	based	base	VBN
cord-324395-v5uiuhih	100	8	on	on	IN
cord-324395-v5uiuhih	100	9	K	K	NNP
cord-324395-v5uiuhih	100	10	-	-	HYPH
cord-324395-v5uiuhih	100	11	d	d	JJ
cord-324395-v5uiuhih	100	12	trees	tree	NNS
cord-324395-v5uiuhih	100	13	for	for	IN
cord-324395-v5uiuhih	100	14	intra	intra	JJ
cord-324395-v5uiuhih	100	15	-	-	JJ
cord-324395-v5uiuhih	100	16	and	and	CC
cord-324395-v5uiuhih	100	17	interclashes	interclashe	NNS
cord-324395-v5uiuhih	100	18	of	of	IN
cord-324395-v5uiuhih	100	19	glycans	glycan	NNS
cord-324395-v5uiuhih	100	20	.	.	.
cord-324395-v5uiuhih	101	1	Standard	standard	JJ
cord-324395-v5uiuhih	101	2	grid	grid	NN
cord-324395-v5uiuhih	101	3	mapping	mapping	NN
cord-324395-v5uiuhih	101	4	is	be	VBZ
cord-324395-v5uiuhih	101	5	used	use	VBN
cord-324395-v5uiuhih	101	6	for	for	IN
cord-324395-v5uiuhih	101	7	the	the	DT
cord-324395-v5uiuhih	101	8	detection	detection	NN
cord-324395-v5uiuhih	101	9	of	of	IN
cord-324395-v5uiuhih	101	10	clashes	clash	NNS
cord-324395-v5uiuhih	101	11	between	between	IN
cord-324395-v5uiuhih	101	12	glycans	glycan	NNS
cord-324395-v5uiuhih	101	13	and	and	CC
cord-324395-v5uiuhih	101	14	their	-PRON-	PRP$
cord-324395-v5uiuhih	101	15	environment	environment	NN
cord-324395-v5uiuhih	101	16	.	.	.
cord-324395-v5uiuhih	102	1	To	to	TO
cord-324395-v5uiuhih	102	2	reduce	reduce	VB
cord-324395-v5uiuhih	102	3	the	the	DT
cord-324395-v5uiuhih	102	4	search	search	NN
cord-324395-v5uiuhih	102	5	space	space	NN
cord-324395-v5uiuhih	102	6	,	,	,
cord-324395-v5uiuhih	102	7	the	the	DT
cord-324395-v5uiuhih	102	8	genetic	genetic	JJ
cord-324395-v5uiuhih	102	9	algorithm	algorithm	NN
cord-324395-v5uiuhih	102	10	iteratively	iteratively	RB
cord-324395-v5uiuhih	102	11	optimizes	optimize	VBZ
cord-324395-v5uiuhih	102	12	subsets	subset	NNS
cord-324395-v5uiuhih	102	13	of	of	IN
cord-324395-v5uiuhih	102	14	glycans	glycan	NNS
cord-324395-v5uiuhih	102	15	with	with	IN
cord-324395-v5uiuhih	102	16	the	the	DT
cord-324395-v5uiuhih	102	17	highest	high	JJS
cord-324395-v5uiuhih	102	18	number	number	NN
cord-324395-v5uiuhih	102	19	of	of	IN
cord-324395-v5uiuhih	102	20	steric	steric	JJ
cord-324395-v5uiuhih	102	21	clashes	clash	NNS
cord-324395-v5uiuhih	102	22	.	.	.
cord-324395-v5uiuhih	103	1	Drawer	drawer	NN
cord-324395-v5uiuhih	103	2	class	class	NN
cord-324395-v5uiuhih	103	3	is	be	VBZ
cord-324395-v5uiuhih	103	4	used	use	VBN
cord-324395-v5uiuhih	103	5	for	for	IN
cord-324395-v5uiuhih	103	6	generating	generate	VBG
cord-324395-v5uiuhih	103	7	2D	2d	JJ
cord-324395-v5uiuhih	103	8	symbolic	symbolic	JJ
cord-324395-v5uiuhih	103	9	representations	representation	NNS
cord-324395-v5uiuhih	103	10	of	of	IN
cord-324395-v5uiuhih	103	11	glycans	glycan	NNS
cord-324395-v5uiuhih	103	12	according	accord	VBG
cord-324395-v5uiuhih	103	13	to	to	IN
cord-324395-v5uiuhih	103	14	the	the	DT
cord-324395-v5uiuhih	103	15	IUPAC	IUPAC	NNP
cord-324395-v5uiuhih	103	16	standard	standard	NN
cord-324395-v5uiuhih	103	17	.	.	.
cord-324395-v5uiuhih	104	1	The	the	DT
cord-324395-v5uiuhih	104	2	inter	inter	JJ
cord-324395-v5uiuhih	104	3	-	-	JJ
cord-324395-v5uiuhih	104	4	residue	residue	JJ
cord-324395-v5uiuhih	104	5	connectivity	connectivity	NN
cord-324395-v5uiuhih	104	6	graph	graph	NN
cord-324395-v5uiuhih	104	7	stored	store	VBN
cord-324395-v5uiuhih	104	8	in	in	IN
cord-324395-v5uiuhih	104	9	a	a	DT
cord-324395-v5uiuhih	104	10	Molecule	Molecule	NNP
cord-324395-v5uiuhih	104	11	is	be	VBZ
cord-324395-v5uiuhih	104	12	used	use	VBN
cord-324395-v5uiuhih	104	13	for	for	IN
cord-324395-v5uiuhih	104	14	drawing	draw	VBG
cord-324395-v5uiuhih	104	15	the	the	DT
cord-324395-v5uiuhih	104	16	connectivity	connectivity	NN
cord-324395-v5uiuhih	104	17	of	of	IN
cord-324395-v5uiuhih	104	18	a	a	DT
cord-324395-v5uiuhih	104	19	glycan	glycan	NN
cord-324395-v5uiuhih	104	20	.	.	.
cord-324395-v5uiuhih	105	1	The	the	DT
cord-324395-v5uiuhih	105	2	protein	protein	NN
cord-324395-v5uiuhih	105	3	is	be	VBZ
cord-324395-v5uiuhih	105	4	represented	represent	VBN
cord-324395-v5uiuhih	105	5	as	as	IN
cord-324395-v5uiuhih	105	6	a	a	DT
cord-324395-v5uiuhih	105	7	ribbon	ribbon	NN
cord-324395-v5uiuhih	105	8	,	,	,
cord-324395-v5uiuhih	105	9	each	each	DT
cord-324395-v5uiuhih	105	10	sequon	sequon	NN
cord-324395-v5uiuhih	105	11	is	be	VBZ
cord-324395-v5uiuhih	105	12	highlighted	highlight	VBN
cord-324395-v5uiuhih	105	13	and	and	CC
cord-324395-v5uiuhih	105	14	the	the	DT
cord-324395-v5uiuhih	105	15	linked	link	VBN
cord-324395-v5uiuhih	105	16	glycans	glycan	NNS
cord-324395-v5uiuhih	105	17	are	be	VBP
cord-324395-v5uiuhih	105	18	shown	show	VBN
cord-324395-v5uiuhih	105	19	as	as	IN
cord-324395-v5uiuhih	105	20	a	a	DT
cord-324395-v5uiuhih	105	21	tree	tree	NN
cord-324395-v5uiuhih	105	22	topology	topology	NN
cord-324395-v5uiuhih	105	23	.	.	.
cord-324395-v5uiuhih	106	1	The	the	DT
cord-324395-v5uiuhih	106	2	graphical	graphical	JJ
cord-324395-v5uiuhih	106	3	representation	representation	NN
cord-324395-v5uiuhih	106	4	is	be	VBZ
cord-324395-v5uiuhih	106	5	produced	produce	VBN
cord-324395-v5uiuhih	106	6	with	with	IN
cord-324395-v5uiuhih	106	7	Matplotlib	Matplotlib	NNP
cord-324395-v5uiuhih	106	8	and	and	CC
cord-324395-v5uiuhih	106	9	can	can	MD
cord-324395-v5uiuhih	106	10	be	be	VB
cord-324395-v5uiuhih	106	11	further	further	RB
cord-324395-v5uiuhih	106	12	modified	modify	VBN
cord-324395-v5uiuhih	106	13	by	by	IN
cord-324395-v5uiuhih	106	14	the	the	DT
cord-324395-v5uiuhih	106	15	users	user	NNS
cord-324395-v5uiuhih	106	16	(	(	-LRB-
cord-324395-v5uiuhih	106	17	e.g.	e.g.	RB
cord-324395-v5uiuhih	106	18	,	,	,
cord-324395-v5uiuhih	106	19	add	add	VB
cord-324395-v5uiuhih	106	20	text	text	NN
cord-324395-v5uiuhih	106	21	,	,	,
cord-324395-v5uiuhih	106	22	rescale	rescale	VB
cord-324395-v5uiuhih	106	23	)	)	-RRB-
cord-324395-v5uiuhih	106	24	and	and	CC
cord-324395-v5uiuhih	106	25	exported	export	VBN
cord-324395-v5uiuhih	106	26	in	in	IN
cord-324395-v5uiuhih	106	27	various	various	JJ
cord-324395-v5uiuhih	106	28	image	image	NN
cord-324395-v5uiuhih	106	29	formats	format	NNS
cord-324395-v5uiuhih	106	30	.	.	.
cord-324395-v5uiuhih	107	1	We	-PRON-	PRP
cord-324395-v5uiuhih	107	2	compared	compare	VBD
cord-324395-v5uiuhih	107	3	the	the	DT
cord-324395-v5uiuhih	107	4	performance	performance	NN
cord-324395-v5uiuhih	107	5	of	of	IN
cord-324395-v5uiuhih	107	6	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	107	7	and	and	CC
cord-324395-v5uiuhih	107	8	doGlycans	doGlycans	NNP
cord-324395-v5uiuhih	107	9	,	,	,
cord-324395-v5uiuhih	107	10	another	another	DT
cord-324395-v5uiuhih	107	11	Python	Python	NNP
cord-324395-v5uiuhih	107	12	framework	framework	NN
cord-324395-v5uiuhih	107	13	for	for	IN
cord-324395-v5uiuhih	107	14	modeling	model	VBG
cord-324395-v5uiuhih	107	15	glycans	glycan	NNS
cord-324395-v5uiuhih	107	16	using	use	VBG
cord-324395-v5uiuhih	107	17	three	three	CD
cord-324395-v5uiuhih	107	18	representative	representative	JJ
cord-324395-v5uiuhih	107	19	viral	viral	JJ
cord-324395-v5uiuhih	107	20	envelope	envelope	NN
cord-324395-v5uiuhih	107	21	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	107	22	,	,	,
cord-324395-v5uiuhih	107	23	each	each	DT
cord-324395-v5uiuhih	107	24	containing	contain	VBG
cord-324395-v5uiuhih	107	25	different	different	JJ
cord-324395-v5uiuhih	107	26	numbers	number	NNS
cord-324395-v5uiuhih	107	27	of	of	IN
cord-324395-v5uiuhih	107	28	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	107	29	sites	site	NNS
cord-324395-v5uiuhih	107	30	and	and	CC
cord-324395-v5uiuhih	107	31	overall	overall	JJ
cord-324395-v5uiuhih	107	32	glycan	glycan	NN
cord-324395-v5uiuhih	107	33	density	density	NN
cord-324395-v5uiuhih	107	34	.	.	.
cord-324395-v5uiuhih	108	1	The	the	DT
cord-324395-v5uiuhih	108	2	glycans	glycan	NNS
cord-324395-v5uiuhih	108	3	on	on	IN
cord-324395-v5uiuhih	108	4	the	the	DT
cord-324395-v5uiuhih	108	5	surface	surface	NN
cord-324395-v5uiuhih	108	6	of	of	IN
cord-324395-v5uiuhih	108	7	these	these	DT
cord-324395-v5uiuhih	108	8	proteins	protein	NNS
cord-324395-v5uiuhih	108	9	create	create	VBP
cord-324395-v5uiuhih	108	10	a	a	DT
cord-324395-v5uiuhih	108	11	shield	shield	NN
cord-324395-v5uiuhih	108	12	that	that	WDT
cord-324395-v5uiuhih	108	13	helps	help	VBZ
cord-324395-v5uiuhih	108	14	them	-PRON-	PRP
cord-324395-v5uiuhih	108	15	to	to	TO
cord-324395-v5uiuhih	108	16	evade	evade	VB
cord-324395-v5uiuhih	108	17	the	the	DT
cord-324395-v5uiuhih	108	18	host	host	NN
cord-324395-v5uiuhih	108	19	's	's	POS
cord-324395-v5uiuhih	108	20	immune	immune	JJ
cord-324395-v5uiuhih	108	21	system	system	NN
cord-324395-v5uiuhih	108	22	[	[	-LRB-
cord-324395-v5uiuhih	108	23	28	28	CD
cord-324395-v5uiuhih	108	24	]	]	-RRB-
cord-324395-v5uiuhih	108	25	.	.	.
cord-324395-v5uiuhih	109	1	For	for	IN
cord-324395-v5uiuhih	109	2	the	the	DT
cord-324395-v5uiuhih	109	3	benchmark	benchmark	NN
cord-324395-v5uiuhih	109	4	,	,	,
cord-324395-v5uiuhih	109	5	a	a	DT
cord-324395-v5uiuhih	109	6	mannose	mannose	NN
cord-324395-v5uiuhih	109	7	9	9	CD
cord-324395-v5uiuhih	109	8	was	be	VBD
cord-324395-v5uiuhih	109	9	modeled	model	VBN
cord-324395-v5uiuhih	109	10	at	at	IN
cord-324395-v5uiuhih	109	11	each	each	DT
cord-324395-v5uiuhih	109	12	sequon	sequon	NN
cord-324395-v5uiuhih	109	13	,	,	,
cord-324395-v5uiuhih	109	14	mimicking	mimic	VBG
cord-324395-v5uiuhih	109	15	the	the	DT
cord-324395-v5uiuhih	109	16	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	109	17	state	state	NN
cord-324395-v5uiuhih	109	18	before	before	IN
cord-324395-v5uiuhih	109	19	exiting	exit	VBG
cord-324395-v5uiuhih	109	20	the	the	DT
cord-324395-v5uiuhih	109	21	endoplasmic	endoplasmic	NN
cord-324395-v5uiuhih	109	22	reticulum	reticulum	NN
cord-324395-v5uiuhih	109	23	[	[	-LRB-
cord-324395-v5uiuhih	109	24	29	29	CD
cord-324395-v5uiuhih	109	25	]	]	-RRB-
cord-324395-v5uiuhih	109	26	.	.	.
cord-324395-v5uiuhih	110	1	The	the	DT
cord-324395-v5uiuhih	110	2	topology	topology	NN
cord-324395-v5uiuhih	110	3	of	of	IN
cord-324395-v5uiuhih	110	4	the	the	DT
cord-324395-v5uiuhih	110	5	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	110	6	structure	structure	NN
cord-324395-v5uiuhih	110	7	was	be	VBD
cord-324395-v5uiuhih	110	8	generated	generate	VBN
cord-324395-v5uiuhih	110	9	with	with	IN
cord-324395-v5uiuhih	110	10	the	the	DT
cord-324395-v5uiuhih	110	11	autopsf	autopsf	JJ
cord-324395-v5uiuhih	110	12	plug	plug	NN
cord-324395-v5uiuhih	110	13	-	-	HYPH
cord-324395-v5uiuhih	110	14	in	in	NN
cord-324395-v5uiuhih	110	15	of	of	IN
cord-324395-v5uiuhih	110	16	VMD	VMD	NNP
cord-324395-v5uiuhih	110	17	[	[	-LRB-
cord-324395-v5uiuhih	110	18	30	30	CD
cord-324395-v5uiuhih	110	19	]	]	-RRB-
cord-324395-v5uiuhih	110	20	.	.	.
cord-324395-v5uiuhih	111	1	Each	each	DT
cord-324395-v5uiuhih	111	2	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	111	3	was	be	VBD
cord-324395-v5uiuhih	111	4	then	then	RB
cord-324395-v5uiuhih	111	5	minimized	minimize	VBN
cord-324395-v5uiuhih	111	6	with	with	IN
cord-324395-v5uiuhih	111	7	5000	5000	CD
cord-324395-v5uiuhih	111	8	steps	step	NNS
cord-324395-v5uiuhih	111	9	of	of	IN
cord-324395-v5uiuhih	111	10	conjugate	conjugate	JJ
cord-324395-v5uiuhih	111	11	gradient	gradient	NN
cord-324395-v5uiuhih	111	12	optimization	optimization	NN
cord-324395-v5uiuhih	111	13	in	in	IN
cord-324395-v5uiuhih	111	14	NAMD	NAMD	NNP
cord-324395-v5uiuhih	111	15	[	[	-LRB-
cord-324395-v5uiuhih	111	16	31	31	CD
cord-324395-v5uiuhih	111	17	]	]	-RRB-
cord-324395-v5uiuhih	111	18	.	.	.
cord-324395-v5uiuhih	112	1	The	the	DT
cord-324395-v5uiuhih	112	2	resulting	result	VBG
cord-324395-v5uiuhih	112	3	energy	energy	NN
cord-324395-v5uiuhih	112	4	-	-	HYPH
cord-324395-v5uiuhih	112	5	minimized	minimize	VBN
cord-324395-v5uiuhih	112	6	model	model	NN
cord-324395-v5uiuhih	112	7	was	be	VBD
cord-324395-v5uiuhih	112	8	then	then	RB
cord-324395-v5uiuhih	112	9	submitted	submit	VBN
cord-324395-v5uiuhih	112	10	for	for	IN
cord-324395-v5uiuhih	112	11	a	a	DT
cord-324395-v5uiuhih	112	12	sanity	sanity	NN
cord-324395-v5uiuhih	112	13	check	check	NN
cord-324395-v5uiuhih	112	14	to	to	IN
cord-324395-v5uiuhih	112	15	pdb	pdb	NN
cord-324395-v5uiuhih	112	16	-	-	HYPH
cord-324395-v5uiuhih	112	17	care	care	NN
cord-324395-v5uiuhih	112	18	(	(	-LRB-
cord-324395-v5uiuhih	112	19	http://	http://	NNP
cord-324395-v5uiuhih	112	20	www.glycosciences.de/tools/pdb-care/	www.glycosciences.de/tools/pdb-care/	NNP
cord-324395-v5uiuhih	112	21	)	)	-RRB-
cord-324395-v5uiuhih	112	22	,	,	,
cord-324395-v5uiuhih	112	23	a	a	DT
cord-324395-v5uiuhih	112	24	powerful	powerful	JJ
cord-324395-v5uiuhih	112	25	tool	tool	NN
cord-324395-v5uiuhih	112	26	that	that	WDT
cord-324395-v5uiuhih	112	27	checks	check	VBZ
cord-324395-v5uiuhih	112	28	the	the	DT
cord-324395-v5uiuhih	112	29	connectivity	connectivity	NN
cord-324395-v5uiuhih	112	30	and	and	CC
cord-324395-v5uiuhih	112	31	nomenclature	nomenclature	NN
cord-324395-v5uiuhih	112	32	in	in	IN
cord-324395-v5uiuhih	112	33	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	112	34	[	[	-LRB-
cord-324395-v5uiuhih	112	35	32	32	CD
cord-324395-v5uiuhih	112	36	]	]	-RRB-
cord-324395-v5uiuhih	112	37	.	.	.
cord-324395-v5uiuhih	113	1	We	-PRON-	PRP
cord-324395-v5uiuhih	113	2	observed	observe	VBD
cord-324395-v5uiuhih	113	3	that	that	IN
cord-324395-v5uiuhih	113	4	all	all	DT
cord-324395-v5uiuhih	113	5	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	113	6	modeled	model	VBN
cord-324395-v5uiuhih	113	7	with	with	IN
cord-324395-v5uiuhih	113	8	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	113	9	had	have	VBD
cord-324395-v5uiuhih	113	10	a	a	DT
cord-324395-v5uiuhih	113	11	lower	low	JJR
cord-324395-v5uiuhih	113	12	potential	potential	JJ
cord-324395-v5uiuhih	113	13	energy	energy	NN
cord-324395-v5uiuhih	113	14	and	and	CC
cord-324395-v5uiuhih	113	15	were	be	VBD
cord-324395-v5uiuhih	113	16	devoid	devoid	JJ
cord-324395-v5uiuhih	113	17	of	of	IN
cord-324395-v5uiuhih	113	18	any	any	DT
cord-324395-v5uiuhih	113	19	steric	steric	JJ
cord-324395-v5uiuhih	113	20	clashes	clash	NNS
cord-324395-v5uiuhih	113	21	and	and	CC
cord-324395-v5uiuhih	113	22	topological	topological	JJ
cord-324395-v5uiuhih	113	23	errors	error	NNS
cord-324395-v5uiuhih	113	24	(	(	-LRB-
cord-324395-v5uiuhih	113	25	Table	table	NN
cord-324395-v5uiuhih	113	26	2	2	CD
cord-324395-v5uiuhih	113	27	)	)	-RRB-
cord-324395-v5uiuhih	113	28	.	.	.
cord-324395-v5uiuhih	114	1	For	for	IN
cord-324395-v5uiuhih	114	2	structures	structure	NNS
cord-324395-v5uiuhih	114	3	with	with	IN
cord-324395-v5uiuhih	114	4	a	a	DT
cord-324395-v5uiuhih	114	5	low	low	JJ
cord-324395-v5uiuhih	114	6	density	density	NN
cord-324395-v5uiuhih	114	7	of	of	IN
cord-324395-v5uiuhih	114	8	sequons	sequon	NNS
cord-324395-v5uiuhih	114	9	,	,	,
cord-324395-v5uiuhih	114	10	such	such	JJ
cord-324395-v5uiuhih	114	11	as	as	IN
cord-324395-v5uiuhih	114	12	Influenza	Influenza	NNP
cord-324395-v5uiuhih	114	13	's	's	POS
cord-324395-v5uiuhih	114	14	hemagglutinin	hemagglutinin	NN
cord-324395-v5uiuhih	114	15	,	,	,
cord-324395-v5uiuhih	114	16	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	114	17	and	and	CC
cord-324395-v5uiuhih	114	18	doGlycans	doGlycans	NNP
cord-324395-v5uiuhih	114	19	performed	perform	VBD
cord-324395-v5uiuhih	114	20	similarly	similarly	RB
cord-324395-v5uiuhih	114	21	.	.	.
cord-324395-v5uiuhih	115	1	However	however	RB
cord-324395-v5uiuhih	115	2	,	,	,
cord-324395-v5uiuhih	115	3	a	a	DT
cord-324395-v5uiuhih	115	4	simple	simple	JJ
cord-324395-v5uiuhih	115	5	minimization	minimization	NN
cord-324395-v5uiuhih	115	6	was	be	VBD
cord-324395-v5uiuhih	115	7	insufficient	insufficient	JJ
cord-324395-v5uiuhih	115	8	for	for	IN
cord-324395-v5uiuhih	115	9	removing	remove	VBG
cord-324395-v5uiuhih	115	10	steric	steric	JJ
cord-324395-v5uiuhih	115	11	clashes	clash	NNS
cord-324395-v5uiuhih	115	12	from	from	IN
cord-324395-v5uiuhih	115	13	the	the	DT
cord-324395-v5uiuhih	115	14	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	115	15	Envelope	Envelope	NNP
cord-324395-v5uiuhih	115	16	trimer	trimer	NN
cord-324395-v5uiuhih	115	17	and	and	CC
cord-324395-v5uiuhih	115	18	Delta	Delta	NNP
cord-324395-v5uiuhih	115	19	coronavirus	coronavirus	NN
cord-324395-v5uiuhih	115	20	spike	spike	NN
cord-324395-v5uiuhih	115	21	protein	protein	NN
cord-324395-v5uiuhih	115	22	structures	structure	NNS
cord-324395-v5uiuhih	115	23	using	use	VBG
cord-324395-v5uiuhih	115	24	doGlycans	doglycan	NNS
cord-324395-v5uiuhih	115	25	.	.	.
cord-324395-v5uiuhih	116	1	The	the	DT
cord-324395-v5uiuhih	116	2	density	density	NN
cord-324395-v5uiuhih	116	3	of	of	IN
cord-324395-v5uiuhih	116	4	sequons	sequon	NNS
cord-324395-v5uiuhih	116	5	at	at	IN
cord-324395-v5uiuhih	116	6	the	the	DT
cord-324395-v5uiuhih	116	7	surface	surface	NN
cord-324395-v5uiuhih	116	8	of	of	IN
cord-324395-v5uiuhih	116	9	these	these	DT
cord-324395-v5uiuhih	116	10	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	116	11	is	be	VBZ
cord-324395-v5uiuhih	116	12	high	high	JJ
cord-324395-v5uiuhih	116	13	,	,	,
cord-324395-v5uiuhih	116	14	requiring	require	VBG
cord-324395-v5uiuhih	116	15	a	a	DT
cord-324395-v5uiuhih	116	16	more	more	RBR
cord-324395-v5uiuhih	116	17	effective	effective	JJ
cord-324395-v5uiuhih	116	18	strategy	strategy	NN
cord-324395-v5uiuhih	116	19	for	for	IN
cord-324395-v5uiuhih	116	20	removing	remove	VBG
cord-324395-v5uiuhih	116	21	clashes	clash	NNS
cord-324395-v5uiuhih	116	22	,	,	,
cord-324395-v5uiuhih	116	23	such	such	JJ
cord-324395-v5uiuhih	116	24	as	as	IN
cord-324395-v5uiuhih	116	25	provided	provide	VBN
cord-324395-v5uiuhih	116	26	by	by	IN
cord-324395-v5uiuhih	116	27	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	116	28	's	's	POS
cord-324395-v5uiuhih	116	29	Sampler	Sampler	NNP
cord-324395-v5uiuhih	116	30	Class	Class	NNP
cord-324395-v5uiuhih	116	31	.	.	.
cord-324395-v5uiuhih	117	1	The	the	DT
cord-324395-v5uiuhih	117	2	steric	steric	JJ
cord-324395-v5uiuhih	117	3	clashes	clash	NNS
cord-324395-v5uiuhih	117	4	present	present	JJ
cord-324395-v5uiuhih	117	5	in	in	IN
cord-324395-v5uiuhih	117	6	the	the	DT
cord-324395-v5uiuhih	117	7	structures	structure	NNS
cord-324395-v5uiuhih	117	8	produced	produce	VBN
cord-324395-v5uiuhih	117	9	with	with	IN
cord-324395-v5uiuhih	117	10	doGlycans	doGlycans	NNP
cord-324395-v5uiuhih	117	11	lead	lead	VBP
cord-324395-v5uiuhih	117	12	topological	topological	JJ
cord-324395-v5uiuhih	117	13	errors	error	NNS
cord-324395-v5uiuhih	117	14	,	,	,
cord-324395-v5uiuhih	117	15	such	such	JJ
cord-324395-v5uiuhih	117	16	as	as	IN
cord-324395-v5uiuhih	117	17	ring	ring	NN
cord-324395-v5uiuhih	117	18	puckering	puckering	NN
cord-324395-v5uiuhih	117	19	after	after	IN
cord-324395-v5uiuhih	117	20	minimizations	minimization	NNS
cord-324395-v5uiuhih	117	21	.	.	.
cord-324395-v5uiuhih	118	1	In	in	IN
cord-324395-v5uiuhih	118	2	order	order	NN
cord-324395-v5uiuhih	118	3	to	to	TO
cord-324395-v5uiuhih	118	4	solve	solve	VB
cord-324395-v5uiuhih	118	5	this	this	DT
cord-324395-v5uiuhih	118	6	issue	issue	NN
cord-324395-v5uiuhih	118	7	,	,	,
cord-324395-v5uiuhih	118	8	the	the	DT
cord-324395-v5uiuhih	118	9	torsional	torsional	JJ
cord-324395-v5uiuhih	118	10	angles	angle	NNS
cord-324395-v5uiuhih	118	11	would	would	MD
cord-324395-v5uiuhih	118	12	have	have	VB
cord-324395-v5uiuhih	118	13	to	to	TO
cord-324395-v5uiuhih	118	14	be	be	VB
cord-324395-v5uiuhih	118	15	manually	manually	RB
cord-324395-v5uiuhih	118	16	adjusted	adjust	VBN
cord-324395-v5uiuhih	118	17	by	by	IN
cord-324395-v5uiuhih	118	18	the	the	DT
cord-324395-v5uiuhih	118	19	user	user	NN
cord-324395-v5uiuhih	118	20	.	.	.
cord-324395-v5uiuhih	119	1	As	as	IN
cord-324395-v5uiuhih	119	2	an	an	DT
cord-324395-v5uiuhih	119	3	additional	additional	JJ
cord-324395-v5uiuhih	119	4	test	test	NN
cord-324395-v5uiuhih	119	5	case	case	NN
cord-324395-v5uiuhih	119	6	,	,	,
cord-324395-v5uiuhih	119	7	we	-PRON-	PRP
cord-324395-v5uiuhih	119	8	modeled	model	VBD
cord-324395-v5uiuhih	119	9	the	the	DT
cord-324395-v5uiuhih	119	10	glycan	glycan	NN
cord-324395-v5uiuhih	119	11	shield	shield	NN
cord-324395-v5uiuhih	119	12	of	of	IN
cord-324395-v5uiuhih	119	13	the	the	DT
cord-324395-v5uiuhih	119	14	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	119	15	Env	Env	NNP
cord-324395-v5uiuhih	119	16	trimer	trimer	NN
cord-324395-v5uiuhih	119	17	using	use	VBG
cord-324395-v5uiuhih	119	18	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	119	19	.	.	.
cord-324395-v5uiuhih	120	1	The	the	DT
cord-324395-v5uiuhih	120	2	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	120	3	Env	Env	NNP
cord-324395-v5uiuhih	120	4	trimer	trimer	NN
cord-324395-v5uiuhih	120	5	consists	consist	VBZ
cord-324395-v5uiuhih	120	6	of	of	IN
cord-324395-v5uiuhih	120	7	80	80	CD
cord-324395-v5uiuhih	120	8	-	-	SYM
cord-324395-v5uiuhih	120	9	100	100	CD
cord-324395-v5uiuhih	120	10	sequons	sequon	NNS
cord-324395-v5uiuhih	120	11	making	make	VBG
cord-324395-v5uiuhih	120	12	it	-PRON-	PRP
cord-324395-v5uiuhih	120	13	one	one	CD
cord-324395-v5uiuhih	120	14	of	of	IN
cord-324395-v5uiuhih	120	15	the	the	DT
cord-324395-v5uiuhih	120	16	most	most	RBS
cord-324395-v5uiuhih	120	17	highly	highly	RB
cord-324395-v5uiuhih	120	18	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	120	19	proteins	protein	NNS
cord-324395-v5uiuhih	120	20	currently	currently	RB
cord-324395-v5uiuhih	120	21	known	know	VBN
cord-324395-v5uiuhih	120	22	.	.	.
cord-324395-v5uiuhih	121	1	We	-PRON-	PRP
cord-324395-v5uiuhih	121	2	chose	choose	VBD
cord-324395-v5uiuhih	121	3	the	the	DT
cord-324395-v5uiuhih	121	4	BG505-SOSIP	BG505-SOSIP	NNP
cord-324395-v5uiuhih	121	5	structure	structure	NN
cord-324395-v5uiuhih	121	6	with	with	IN
cord-324395-v5uiuhih	121	7	PDB	PDB	NNP
cord-324395-v5uiuhih	121	8	:	:	:
cord-324395-v5uiuhih	121	9	ID	ID	NNP
cord-324395-v5uiuhih	121	10	5fyl	5fyl	CD
cord-324395-v5uiuhih	121	11	,	,	,
cord-324395-v5uiuhih	121	12	[	[	-LRB-
cord-324395-v5uiuhih	121	13	33	33	CD
cord-324395-v5uiuhih	121	14	]	]	-RRB-
cord-324395-v5uiuhih	121	15	)	)	-RRB-
cord-324395-v5uiuhih	121	16	as	as	IN
cord-324395-v5uiuhih	121	17	the	the	DT
cord-324395-v5uiuhih	121	18	starting	starting	NN
cord-324395-v5uiuhih	121	19	structure	structure	NN
cord-324395-v5uiuhih	121	20	.	.	.
cord-324395-v5uiuhih	122	1	First	first	RB
cord-324395-v5uiuhih	122	2	,	,	,
cord-324395-v5uiuhih	122	3	all	all	DT
cord-324395-v5uiuhih	122	4	crystallographically	crystallographically	RB
cord-324395-v5uiuhih	122	5	-	-	HYPH
cord-324395-v5uiuhih	122	6	determined	determine	VBN
cord-324395-v5uiuhih	122	7	glycans	glycan	NNS
cord-324395-v5uiuhih	122	8	were	be	VBD
cord-324395-v5uiuhih	122	9	identified	identify	VBN
cord-324395-v5uiuhih	122	10	and	and	CC
cord-324395-v5uiuhih	122	11	hydrogenated	hydrogenate	VBN
cord-324395-v5uiuhih	122	12	(	(	-LRB-
cord-324395-v5uiuhih	122	13	Fig	Fig	NNP
cord-324395-v5uiuhih	122	14	.	.	NNP
cord-324395-v5uiuhih	122	15	1	1	CD
cord-324395-v5uiuhih	122	16	,	,	,
cord-324395-v5uiuhih	122	17	upper	upper	JJ
cord-324395-v5uiuhih	122	18	left	left	JJ
cord-324395-v5uiuhih	122	19	triangle	triangle	NN
cord-324395-v5uiuhih	122	20	)	)	-RRB-
cord-324395-v5uiuhih	122	21	.	.	.
cord-324395-v5uiuhih	123	1	The	the	DT
cord-324395-v5uiuhih	123	2	ribbon	ribbon	NN
cord-324395-v5uiuhih	123	3	representation	representation	NN
cord-324395-v5uiuhih	123	4	allowed	allow	VBN
cord-324395-v5uiuhih	123	5	for	for	IN
cord-324395-v5uiuhih	123	6	a	a	DT
cord-324395-v5uiuhih	123	7	quick	quick	JJ
cord-324395-v5uiuhih	123	8	visual	visual	JJ
cord-324395-v5uiuhih	123	9	inspection	inspection	NN
cord-324395-v5uiuhih	123	10	of	of	IN
cord-324395-v5uiuhih	123	11	the	the	DT
cord-324395-v5uiuhih	123	12	identified	identify	VBN
cord-324395-v5uiuhih	123	13	N	n	NN
cord-324395-v5uiuhih	123	14	-	-	HYPH
cord-324395-v5uiuhih	123	15	linked	link	VBN
cord-324395-v5uiuhih	123	16	sequons	sequon	NNS
cord-324395-v5uiuhih	123	17	and	and	CC
cord-324395-v5uiuhih	123	18	linked	link	VBN
cord-324395-v5uiuhih	123	19	glycans	glycan	NNS
cord-324395-v5uiuhih	123	20	.	.	.
cord-324395-v5uiuhih	124	1	A	a	DT
cord-324395-v5uiuhih	124	2	combination	combination	NN
cord-324395-v5uiuhih	124	3	of	of	IN
cord-324395-v5uiuhih	124	4	mannose	mannose	NN
cord-324395-v5uiuhih	124	5	5	5	CD
cord-324395-v5uiuhih	124	6	,	,	,
cord-324395-v5uiuhih	124	7	mannose	mannose	NN
cord-324395-v5uiuhih	124	8	9	9	CD
cord-324395-v5uiuhih	124	9	and	and	CC
cord-324395-v5uiuhih	124	10	complex	complex	JJ
cord-324395-v5uiuhih	124	11	glycans	glycan	NNS
cord-324395-v5uiuhih	124	12	was	be	VBD
cord-324395-v5uiuhih	124	13	then	then	RB
cord-324395-v5uiuhih	124	14	modeled	model	VBN
cord-324395-v5uiuhih	124	15	ab	ab	NN
cord-324395-v5uiuhih	124	16	initio	initio	NNS
cord-324395-v5uiuhih	124	17	or	or	CC
cord-324395-v5uiuhih	124	18	by	by	IN
cord-324395-v5uiuhih	124	19	extending	extend	VBG
cord-324395-v5uiuhih	124	20	existing	exist	VBG
cord-324395-v5uiuhih	124	21	glycans	glycan	NNS
cord-324395-v5uiuhih	124	22	to	to	TO
cord-324395-v5uiuhih	124	23	produce	produce	VB
cord-324395-v5uiuhih	124	24	a	a	DT
cord-324395-v5uiuhih	124	25	more	more	RBR
cord-324395-v5uiuhih	124	26	biologically	biologically	RB
cord-324395-v5uiuhih	124	27	relevant	relevant	JJ
cord-324395-v5uiuhih	124	28	glycoform	glycoform	NN
cord-324395-v5uiuhih	124	29	of	of	IN
cord-324395-v5uiuhih	124	30	the	the	DT
cord-324395-v5uiuhih	124	31	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	124	32	Env	Env	NNP
cord-324395-v5uiuhih	124	33	trimer	trimer	NN
cord-324395-v5uiuhih	124	34	(	(	-LRB-
cord-324395-v5uiuhih	124	35	Fig	Fig	NNP
cord-324395-v5uiuhih	124	36	.	.	NNP
cord-324395-v5uiuhih	124	37	1	1	CD
cord-324395-v5uiuhih	124	38	,	,	,
cord-324395-v5uiuhih	124	39	lower	low	JJR
cord-324395-v5uiuhih	124	40	right	right	JJ
cord-324395-v5uiuhih	124	41	 	 	_SP
cord-324395-v5uiuhih	124	42	triangle	triangle	NN
cord-324395-v5uiuhih	124	43	)	)	-RRB-
cord-324395-v5uiuhih	124	44	.	.	.
cord-324395-v5uiuhih	125	1	The	the	DT
cord-324395-v5uiuhih	125	2	Sampler	Sampler	NNP
cord-324395-v5uiuhih	125	3	function	function	NN
cord-324395-v5uiuhih	125	4	in	in	IN
cord-324395-v5uiuhih	125	5	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	125	6	was	be	VBD
cord-324395-v5uiuhih	125	7	then	then	RB
cord-324395-v5uiuhih	125	8	used	use	VBN
cord-324395-v5uiuhih	125	9	to	to	TO
cord-324395-v5uiuhih	125	10	remove	remove	VB
cord-324395-v5uiuhih	125	11	all	all	DT
cord-324395-v5uiuhih	125	12	major	major	JJ
cord-324395-v5uiuhih	125	13	clashes	clash	NNS
cord-324395-v5uiuhih	125	14	,	,	,
cord-324395-v5uiuhih	125	15	such	such	JJ
cord-324395-v5uiuhih	125	16	that	that	IN
cord-324395-v5uiuhih	125	17	the	the	DT
cord-324395-v5uiuhih	125	18	Table	Table	NNP
cord-324395-v5uiuhih	125	19	2	2	CD
cord-324395-v5uiuhih	125	20	Benchmark	Benchmark	NNP
cord-324395-v5uiuhih	125	21	comparing	compare	VBG
cord-324395-v5uiuhih	125	22	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	125	23	and	and	CC
cord-324395-v5uiuhih	125	24	doGlycans	doGlycans	NNP
cord-324395-v5uiuhih	125	25	.	.	.
cord-324395-v5uiuhih	126	1	The	the	DT
cord-324395-v5uiuhih	126	2	average	average	JJ
cord-324395-v5uiuhih	126	3	minimum	minimum	JJ
cord-324395-v5uiuhih	126	4	distance	distance	NN
cord-324395-v5uiuhih	126	5	between	between	IN
cord-324395-v5uiuhih	126	6	sequons	sequon	NNS
cord-324395-v5uiuhih	126	7	was	be	VBD
cord-324395-v5uiuhih	126	8	computed	compute	VBN
cord-324395-v5uiuhih	126	9	between	between	IN
cord-324395-v5uiuhih	126	10	the	the	DT
cord-324395-v5uiuhih	126	11	closest	close	JJS
cord-324395-v5uiuhih	126	12	pairs	pair	NNS
cord-324395-v5uiuhih	126	13	of	of	IN
cord-324395-v5uiuhih	126	14	asparagine	asparagine	JJ
cord-324395-v5uiuhih	126	15	Cα	Cα	NNP
cord-324395-v5uiuhih	126	16	atoms	atom	NNS
cord-324395-v5uiuhih	126	17	.	.	.
cord-324395-v5uiuhih	127	1	The	the	DT
cord-324395-v5uiuhih	127	2	number	number	NN
cord-324395-v5uiuhih	127	3	of	of	IN
cord-324395-v5uiuhih	127	4	issues	issue	NNS
cord-324395-v5uiuhih	127	5	accounts	account	VBZ
cord-324395-v5uiuhih	127	6	for	for	IN
cord-324395-v5uiuhih	127	7	errors	error	NNS
cord-324395-v5uiuhih	127	8	in	in	IN
cord-324395-v5uiuhih	127	9	glycan	glycan	NN
cord-324395-v5uiuhih	127	10	connectivity	connectivity	NN
cord-324395-v5uiuhih	127	11	and	and	CC
cord-324395-v5uiuhih	127	12	nomenclature	nomenclature	NN
cord-324395-v5uiuhih	127	13	due	due	JJ
cord-324395-v5uiuhih	127	14	to	to	IN
cord-324395-v5uiuhih	127	15	steric	steric	JJ
cord-324395-v5uiuhih	127	16	clashes	clash	NNS
cord-324395-v5uiuhih	127	17	.	.	.
cord-324395-v5uiuhih	128	1	The	the	DT
cord-324395-v5uiuhih	128	2	potential	potential	JJ
cord-324395-v5uiuhih	128	3	energy	energy	NN
cord-324395-v5uiuhih	128	4	was	be	VBD
cord-324395-v5uiuhih	128	5	calculated	calculate	VBN
cord-324395-v5uiuhih	128	6	after	after	IN
cord-324395-v5uiuhih	128	7	5000	5000	CD
cord-324395-v5uiuhih	128	8	steps	step	NNS
cord-324395-v5uiuhih	128	9	of	of	IN
cord-324395-v5uiuhih	128	10	conjugate	conjugate	JJ
cord-324395-v5uiuhih	128	11	gradient	gradient	NN
cord-324395-v5uiuhih	128	12	energy	energy	NN
cord-324395-v5uiuhih	128	13	minimization	minimization	NN
cord-324395-v5uiuhih	128	14	Better	well	JJR
cord-324395-v5uiuhih	128	15	performance	performance	NN
cord-324395-v5uiuhih	128	16	are	be	VBP
cord-324395-v5uiuhih	128	17	highlighted	highlight	VBN
cord-324395-v5uiuhih	128	18	in	in	IN
cord-324395-v5uiuhih	128	19	bold	bold	JJ
cord-324395-v5uiuhih	128	20	topology	topology	NN
cord-324395-v5uiuhih	128	21	of	of	IN
cord-324395-v5uiuhih	128	22	the	the	DT
cord-324395-v5uiuhih	128	23	full	full	JJ
cord-324395-v5uiuhih	128	24	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	128	25	could	could	MD
cord-324395-v5uiuhih	128	26	be	be	VB
cord-324395-v5uiuhih	128	27	generated	generate	VBN
cord-324395-v5uiuhih	128	28	directly	directly	RB
cord-324395-v5uiuhih	128	29	with	with	IN
cord-324395-v5uiuhih	128	30	the	the	DT
cord-324395-v5uiuhih	128	31	autopsf	autopsf	JJ
cord-324395-v5uiuhih	128	32	plug	plug	NN
cord-324395-v5uiuhih	128	33	-	-	HYPH
cord-324395-v5uiuhih	128	34	in	in	NN
cord-324395-v5uiuhih	128	35	of	of	IN
cord-324395-v5uiuhih	128	36	VMD	VMD	NNP
cord-324395-v5uiuhih	128	37	[	[	-LRB-
cord-324395-v5uiuhih	128	38	30	30	CD
cord-324395-v5uiuhih	128	39	]	]	-RRB-
cord-324395-v5uiuhih	128	40	.	.	.
cord-324395-v5uiuhih	129	1	The	the	DT
cord-324395-v5uiuhih	129	2	remaining	remain	VBG
cord-324395-v5uiuhih	129	3	clashes	clash	NNS
cord-324395-v5uiuhih	129	4	were	be	VBD
cord-324395-v5uiuhih	129	5	quickly	quickly	RB
cord-324395-v5uiuhih	129	6	removed	remove	VBN
cord-324395-v5uiuhih	129	7	with	with	IN
cord-324395-v5uiuhih	129	8	5000	5000	CD
cord-324395-v5uiuhih	129	9	steps	step	NNS
cord-324395-v5uiuhih	129	10	of	of	IN
cord-324395-v5uiuhih	129	11	conjugate	conjugate	JJ
cord-324395-v5uiuhih	129	12	gradient	gradient	NN
cord-324395-v5uiuhih	129	13	energy	energy	NN
cord-324395-v5uiuhih	129	14	minimization	minimization	NN
cord-324395-v5uiuhih	129	15	in	in	IN
cord-324395-v5uiuhih	129	16	NAMD	NAMD	NNP
cord-324395-v5uiuhih	129	17	[	[	-LRB-
cord-324395-v5uiuhih	129	18	31	31	CD
cord-324395-v5uiuhih	129	19	]	]	-RRB-
cord-324395-v5uiuhih	129	20	.	.	.
cord-324395-v5uiuhih	130	1	The	the	DT
cord-324395-v5uiuhih	130	2	resulting	result	VBG
cord-324395-v5uiuhih	130	3	model	model	NN
cord-324395-v5uiuhih	130	4	was	be	VBD
cord-324395-v5uiuhih	130	5	then	then	RB
cord-324395-v5uiuhih	130	6	submitted	submit	VBN
cord-324395-v5uiuhih	130	7	to	to	IN
cord-324395-v5uiuhih	130	8	the	the	DT
cord-324395-v5uiuhih	130	9	pdb	pdb	NN
cord-324395-v5uiuhih	130	10	-	-	HYPH
cord-324395-v5uiuhih	130	11	care	care	NN
cord-324395-v5uiuhih	130	12	server	server	NN
cord-324395-v5uiuhih	130	13	[	[	-LRB-
cord-324395-v5uiuhih	130	14	32	32	CD
cord-324395-v5uiuhih	130	15	]	]	-RRB-
cord-324395-v5uiuhih	130	16	for	for	IN
cord-324395-v5uiuhih	130	17	a	a	DT
cord-324395-v5uiuhih	130	18	sanity	sanity	NN
cord-324395-v5uiuhih	130	19	check	check	NN
cord-324395-v5uiuhih	130	20	and	and	CC
cord-324395-v5uiuhih	130	21	we	-PRON-	PRP
cord-324395-v5uiuhih	130	22	found	find	VBD
cord-324395-v5uiuhih	130	23	no	no	DT
cord-324395-v5uiuhih	130	24	discrepancies	discrepancy	NNS
cord-324395-v5uiuhih	130	25	in	in	IN
cord-324395-v5uiuhih	130	26	connectivity	connectivity	NN
cord-324395-v5uiuhih	130	27	.	.	.
cord-324395-v5uiuhih	131	1	The	the	DT
cord-324395-v5uiuhih	131	2	Python	Python	NNP
cord-324395-v5uiuhih	131	3	script	script	NN
cord-324395-v5uiuhih	131	4	used	use	VBN
cord-324395-v5uiuhih	131	5	for	for	IN
cord-324395-v5uiuhih	131	6	this	this	DT
cord-324395-v5uiuhih	131	7	example	example	NN
cord-324395-v5uiuhih	131	8	is	be	VBZ
cord-324395-v5uiuhih	131	9	available	available	JJ
cord-324395-v5uiuhih	131	10	in	in	IN
cord-324395-v5uiuhih	131	11	the	the	DT
cord-324395-v5uiuhih	131	12	GitHub	GitHub	NNP
cord-324395-v5uiuhih	131	13	repository	repository	NN
cord-324395-v5uiuhih	131	14	.	.	.
cord-324395-v5uiuhih	132	1	Two	two	CD
cord-324395-v5uiuhih	132	2	additional	additional	JJ
cord-324395-v5uiuhih	132	3	examples	example	NNS
cord-324395-v5uiuhih	132	4	for	for	IN
cord-324395-v5uiuhih	132	5	building	building	NN
cord-324395-v5uiuhih	132	6	and	and	CC
cord-324395-v5uiuhih	132	7	identifying	identify	VBG
cord-324395-v5uiuhih	132	8	glycans	glycan	NNS
cord-324395-v5uiuhih	132	9	can	can	MD
cord-324395-v5uiuhih	132	10	be	be	VB
cord-324395-v5uiuhih	132	11	found	find	VBN
cord-324395-v5uiuhih	132	12	in	in	IN
cord-324395-v5uiuhih	132	13	the	the	DT
cord-324395-v5uiuhih	132	14	Supporting	support	VBG
cord-324395-v5uiuhih	132	15	Information	information	NN
cord-324395-v5uiuhih	132	16	section	section	NN
cord-324395-v5uiuhih	132	17	(	(	-LRB-
cord-324395-v5uiuhih	132	18	Additional	additional	JJ
cord-324395-v5uiuhih	132	19	file	file	NN
cord-324395-v5uiuhih	132	20	1	1	CD
cord-324395-v5uiuhih	132	21	:	:	:
cord-324395-v5uiuhih	132	22	Examples	Examples	NNPS
cord-324395-v5uiuhih	132	23	S1	S1	NNP
cord-324395-v5uiuhih	132	24	and	and	CC
cord-324395-v5uiuhih	132	25	S2	S2	NNP
cord-324395-v5uiuhih	132	26	)	)	-RRB-
cord-324395-v5uiuhih	132	27	.	.	.
cord-324395-v5uiuhih	133	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	133	2	is	be	VBZ
cord-324395-v5uiuhih	133	3	a	a	DT
cord-324395-v5uiuhih	133	4	versatile	versatile	JJ
cord-324395-v5uiuhih	133	5	Python	Python	NNP
cord-324395-v5uiuhih	133	6	framework	framework	NN
cord-324395-v5uiuhih	133	7	for	for	IN
cord-324395-v5uiuhih	133	8	manipulating	manipulate	VBG
cord-324395-v5uiuhih	133	9	glycans	glycan	NNS
cord-324395-v5uiuhih	133	10	and	and	CC
cord-324395-v5uiuhih	133	11	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	133	12	that	that	WDT
cord-324395-v5uiuhih	133	13	facilitates	facilitate	VBZ
cord-324395-v5uiuhih	133	14	the	the	DT
cord-324395-v5uiuhih	133	15	structural	structural	JJ
cord-324395-v5uiuhih	133	16	study	study	NN
cord-324395-v5uiuhih	133	17	of	of	IN
cord-324395-v5uiuhih	133	18	glycans	glycan	NNS
cord-324395-v5uiuhih	133	19	.	.	.
cord-324395-v5uiuhih	134	1	It	-PRON-	PRP
cord-324395-v5uiuhih	134	2	will	will	MD
cord-324395-v5uiuhih	134	3	significantly	significantly	RB
cord-324395-v5uiuhih	134	4	improve	improve	VB
cord-324395-v5uiuhih	134	5	the	the	DT
cord-324395-v5uiuhih	134	6	ability	ability	NN
cord-324395-v5uiuhih	134	7	of	of	IN
cord-324395-v5uiuhih	134	8	the	the	DT
cord-324395-v5uiuhih	134	9	glycobiology	glycobiology	NN
cord-324395-v5uiuhih	134	10	community	community	NN
cord-324395-v5uiuhih	134	11	to	to	TO
cord-324395-v5uiuhih	134	12	model	model	VB
cord-324395-v5uiuhih	134	13	glycan	glycan	NN
cord-324395-v5uiuhih	134	14	structure	structure	NN
cord-324395-v5uiuhih	134	15	without	without	IN
cord-324395-v5uiuhih	134	16	requiring	require	VBG
cord-324395-v5uiuhih	134	17	advanced	advanced	JJ
cord-324395-v5uiuhih	134	18	expertise	expertise	NN
cord-324395-v5uiuhih	134	19	in	in	IN
cord-324395-v5uiuhih	134	20	protein	protein	NN
cord-324395-v5uiuhih	134	21	modeling	modeling	NN
cord-324395-v5uiuhih	134	22	or	or	CC
cord-324395-v5uiuhih	134	23	molecular	molecular	JJ
cord-324395-v5uiuhih	134	24	dynamics	dynamic	NNS
cord-324395-v5uiuhih	134	25	.	.	.
cord-324395-v5uiuhih	135	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	135	2	has	have	VBZ
cord-324395-v5uiuhih	135	3	already	already	RB
cord-324395-v5uiuhih	135	4	been	be	VBN
cord-324395-v5uiuhih	135	5	successfully	successfully	RB
cord-324395-v5uiuhih	135	6	used	use	VBN
cord-324395-v5uiuhih	135	7	for	for	IN
cord-324395-v5uiuhih	135	8	several	several	JJ
cord-324395-v5uiuhih	135	9	studies	study	NNS
cord-324395-v5uiuhih	135	10	investigating	investigate	VBG
cord-324395-v5uiuhih	135	11	the	the	DT
cord-324395-v5uiuhih	135	12	dynamics	dynamic	NNS
cord-324395-v5uiuhih	135	13	of	of	IN
cord-324395-v5uiuhih	135	14	glycans	glycan	NNS
cord-324395-v5uiuhih	135	15	over	over	IN
cord-324395-v5uiuhih	135	16	long	long	JJ
cord-324395-v5uiuhih	135	17	timescales	timescale	NNS
cord-324395-v5uiuhih	135	18	(	(	-LRB-
cord-324395-v5uiuhih	135	19	500	500	CD
cord-324395-v5uiuhih	135	20	ns	ns	NN
cord-324395-v5uiuhih	135	21	to	to	IN
cord-324395-v5uiuhih	135	22	2	2	CD
cord-324395-v5uiuhih	135	23	μs	μs	NN
cord-324395-v5uiuhih	135	24	)	)	-RRB-
cord-324395-v5uiuhih	136	1	[	[	-LRB-
cord-324395-v5uiuhih	136	2	33	33	CD
cord-324395-v5uiuhih	136	3	]	]	-RRB-
cord-324395-v5uiuhih	136	4	[	[	-LRB-
cord-324395-v5uiuhih	136	5	34	34	CD
cord-324395-v5uiuhih	136	6	]	]	-RRB-
cord-324395-v5uiuhih	136	7	[	[	-LRB-
cord-324395-v5uiuhih	136	8	35	35	CD
cord-324395-v5uiuhih	136	9	]	]	-RRB-
cord-324395-v5uiuhih	136	10	.	.	.
cord-324395-v5uiuhih	137	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	137	2	is	be	VBZ
cord-324395-v5uiuhih	137	3	a	a	DT
cord-324395-v5uiuhih	137	4	valuable	valuable	JJ
cord-324395-v5uiuhih	137	5	asset	asset	NN
cord-324395-v5uiuhih	137	6	for	for	IN
cord-324395-v5uiuhih	137	7	glycoinformatics	glycoinformatic	NNS
cord-324395-v5uiuhih	137	8	and	and	CC
cord-324395-v5uiuhih	137	9	biomolecular	biomolecular	JJ
cord-324395-v5uiuhih	137	10	modeling	modeling	NN
cord-324395-v5uiuhih	137	11	communities	community	NNS
cord-324395-v5uiuhih	137	12	.	.	.
cord-324395-v5uiuhih	138	1	Furthermore	furthermore	RB
cord-324395-v5uiuhih	138	2	,	,	,
cord-324395-v5uiuhih	138	3	it	-PRON-	PRP
cord-324395-v5uiuhih	138	4	should	should	MD
cord-324395-v5uiuhih	138	5	be	be	VB
cord-324395-v5uiuhih	138	6	noted	note	VBN
cord-324395-v5uiuhih	138	7	that	that	IN
cord-324395-v5uiuhih	138	8	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	138	9	can	can	MD
cord-324395-v5uiuhih	138	10	also	also	RB
cord-324395-v5uiuhih	138	11	be	be	VB
cord-324395-v5uiuhih	138	12	used	use	VBN
cord-324395-v5uiuhih	138	13	to	to	TO
cord-324395-v5uiuhih	138	14	model	model	VB
cord-324395-v5uiuhih	138	15	other	other	JJ
cord-324395-v5uiuhih	138	16	polymers	polymer	NNS
cord-324395-v5uiuhih	138	17	(	(	-LRB-
cord-324395-v5uiuhih	138	18	D09_polymer	D09_polymer	NNP
cord-324395-v5uiuhih	138	19	in	in	IN
cord-324395-v5uiuhih	138	20	Github	Github	NNP
cord-324395-v5uiuhih	138	21	)	)	-RRB-
cord-324395-v5uiuhih	138	22	.	.	.
cord-324395-v5uiuhih	139	1	Project	Project	NNP
cord-324395-v5uiuhih	139	2	name	name	NN
cord-324395-v5uiuhih	139	3	:	:	:
cord-324395-v5uiuhih	139	4	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	139	5	.	.	.
cord-324395-v5uiuhih	140	1	Project	project	NN
cord-324395-v5uiuhih	140	2	home	home	NN
cord-324395-v5uiuhih	140	3	page	page	NN
cord-324395-v5uiuhih	140	4	:	:	:
cord-324395-v5uiuhih	141	1	https://github.com/tlemmin/	https://github.com/tlemmin/	LS
cord-324395-v5uiuhih	142	1	glycosylator	glycosylator	NNP
cord-324395-v5uiuhih	142	2	Operating	Operating	NNP
cord-324395-v5uiuhih	142	3	system(s	system(s	NNP
cord-324395-v5uiuhih	142	4	)	)	-RRB-
cord-324395-v5uiuhih	142	5	:	:	:
cord-324395-v5uiuhih	142	6	Platform	platform	NN
cord-324395-v5uiuhih	142	7	independent	independent	JJ
cord-324395-v5uiuhih	142	8	.	.	.
cord-324395-v5uiuhih	143	1	Programming	programming	NN
cord-324395-v5uiuhih	143	2	language	language	NN
cord-324395-v5uiuhih	143	3	:	:	:
cord-324395-v5uiuhih	143	4	Python	Python	NNP
cord-324395-v5uiuhih	143	5	.	.	.
cord-324395-v5uiuhih	144	1	License	license	NN
cord-324395-v5uiuhih	144	2	:	:	:
cord-324395-v5uiuhih	144	3	MIT	MIT	NNP
cord-324395-v5uiuhih	144	4	.	.	.
cord-324395-v5uiuhih	145	1	Supplementary	supplementary	JJ
cord-324395-v5uiuhih	145	2	information	information	NN
cord-324395-v5uiuhih	145	3	accompanies	accompany	VBZ
cord-324395-v5uiuhih	145	4	this	this	DT
cord-324395-v5uiuhih	145	5	paper	paper	NN
cord-324395-v5uiuhih	145	6	at	at	IN
cord-324395-v5uiuhih	145	7	https://doi.org/10	https://doi.org/10	NNP
cord-324395-v5uiuhih	145	8	.	.	.
cord-324395-v5uiuhih	146	1	1186	1186	CD
cord-324395-v5uiuhih	146	2	/	/	SYM
cord-324395-v5uiuhih	146	3	s12859	s12859	CD
cord-324395-v5uiuhih	146	4	-	-	HYPH
cord-324395-v5uiuhih	146	5	019	019	CD
cord-324395-v5uiuhih	146	6	-	-	HYPH
cord-324395-v5uiuhih	146	7	3097	3097	CD
cord-324395-v5uiuhih	146	8	-	-	SYM
cord-324395-v5uiuhih	146	9	6	6	CD
cord-324395-v5uiuhih	146	10	.	.	.
cord-324395-v5uiuhih	147	1	Additional	additional	JJ
cord-324395-v5uiuhih	147	2	file	file	NN
cord-324395-v5uiuhih	147	3	1	1	CD
cord-324395-v5uiuhih	147	4	:	:	:
cord-324395-v5uiuhih	147	5	Figure	figure	NN
cord-324395-v5uiuhih	147	6	S1	s1	NN
cord-324395-v5uiuhih	147	7	.	.	.
cord-324395-v5uiuhih	148	1	Architecture	Architecture	NNP
cord-324395-v5uiuhih	148	2	of	of	IN
cord-324395-v5uiuhih	148	3	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	148	4	,	,	,
cord-324395-v5uiuhih	148	5	a	a	DT
cord-324395-v5uiuhih	148	6	Python	Python	NNP
cord-324395-v5uiuhih	148	7	framework	framework	NN
cord-324395-v5uiuhih	148	8	for	for	IN
cord-324395-v5uiuhih	148	9	the	the	DT
cord-324395-v5uiuhih	148	10	rapid	rapid	JJ
cord-324395-v5uiuhih	148	11	modeling	modeling	NN
cord-324395-v5uiuhih	148	12	of	of	IN
cord-324395-v5uiuhih	148	13	glycans	glycan	NNS
cord-324395-v5uiuhih	148	14	.	.	.
cord-324395-v5uiuhih	149	1	Each	each	DT
cord-324395-v5uiuhih	149	2	class	class	NN
cord-324395-v5uiuhih	149	3	is	be	VBZ
cord-324395-v5uiuhih	149	4	represented	represent	VBN
cord-324395-v5uiuhih	149	5	Fig	Fig	NNP
cord-324395-v5uiuhih	149	6	.	.	NNP
cord-324395-v5uiuhih	149	7	1	1	CD
cord-324395-v5uiuhih	149	8	Identification	identification	NN
cord-324395-v5uiuhih	149	9	,	,	,
cord-324395-v5uiuhih	149	10	visualization	visualization	NN
cord-324395-v5uiuhih	149	11	and	and	CC
cord-324395-v5uiuhih	149	12	modeling	modeling	NN
cord-324395-v5uiuhih	149	13	of	of	IN
cord-324395-v5uiuhih	149	14	N	n	NN
cord-324395-v5uiuhih	149	15	-	-	HYPH
cord-324395-v5uiuhih	149	16	linked	link	VBN
cord-324395-v5uiuhih	149	17	glycans	glycan	NNS
cord-324395-v5uiuhih	149	18	onto	onto	IN
cord-324395-v5uiuhih	149	19	the	the	DT
cord-324395-v5uiuhih	149	20	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	149	21	Env	Env	NNP
cord-324395-v5uiuhih	149	22	trimer	trimer	NN
cord-324395-v5uiuhih	149	23	.	.	.
cord-324395-v5uiuhih	150	1	Protein	protein	NN
cord-324395-v5uiuhih	150	2	surface	surface	NN
cord-324395-v5uiuhih	150	3	representation	representation	NN
cord-324395-v5uiuhih	150	4	of	of	IN
cord-324395-v5uiuhih	150	5	the	the	DT
cord-324395-v5uiuhih	150	6	highmannose	highmannose	NNP
cord-324395-v5uiuhih	150	7	glycoform	glycoform	NN
cord-324395-v5uiuhih	150	8	of	of	IN
cord-324395-v5uiuhih	150	9	the	the	DT
cord-324395-v5uiuhih	150	10	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	150	11	Env	Env	NNP
cord-324395-v5uiuhih	150	12	Trimer	Trimer	NNP
cord-324395-v5uiuhih	150	13	(	(	-LRB-
cord-324395-v5uiuhih	150	14	PDB	PDB	NNP
cord-324395-v5uiuhih	150	15	ID	ID	NNP
cord-324395-v5uiuhih	150	16	:	:	:
cord-324395-v5uiuhih	150	17	5fyl	5fyl	CD
cord-324395-v5uiuhih	150	18	)	)	-RRB-
cord-324395-v5uiuhih	150	19	.	.	.
cord-324395-v5uiuhih	151	1	Crystallographically	crystallographically	RB
cord-324395-v5uiuhih	151	2	-	-	HYPH
cord-324395-v5uiuhih	151	3	determined	determine	VBN
cord-324395-v5uiuhih	151	4	glycans	glycan	NNS
cord-324395-v5uiuhih	151	5	are	be	VBP
cord-324395-v5uiuhih	151	6	shown	show	VBN
cord-324395-v5uiuhih	151	7	in	in	IN
cord-324395-v5uiuhih	151	8	Licorice	licorice	NN
cord-324395-v5uiuhih	151	9	representation	representation	NN
cord-324395-v5uiuhih	151	10	.	.	.
cord-324395-v5uiuhih	152	1	Each	each	DT
cord-324395-v5uiuhih	152	2	subunit	subunit	NN
cord-324395-v5uiuhih	152	3	(	(	-LRB-
cord-324395-v5uiuhih	152	4	gp120	gp120	NNP
cord-324395-v5uiuhih	152	5	and	and	CC
cord-324395-v5uiuhih	152	6	gp41	gp41	NNP
cord-324395-v5uiuhih	152	7	)	)	-RRB-
cord-324395-v5uiuhih	152	8	is	be	VBZ
cord-324395-v5uiuhih	152	9	represented	represent	VBN
cord-324395-v5uiuhih	152	10	as	as	IN
cord-324395-v5uiuhih	152	11	a	a	DT
cord-324395-v5uiuhih	152	12	ribbon	ribbon	NN
cord-324395-v5uiuhih	152	13	with	with	IN
cord-324395-v5uiuhih	152	14	sequons	sequon	NNS
cord-324395-v5uiuhih	152	15	indicated	indicate	VBN
cord-324395-v5uiuhih	152	16	with	with	IN
cord-324395-v5uiuhih	152	17	gray	gray	JJ
cord-324395-v5uiuhih	152	18	squares	square	NNS
cord-324395-v5uiuhih	152	19	and	and	CC
cord-324395-v5uiuhih	152	20	the	the	DT
cord-324395-v5uiuhih	152	21	N	n	NN
cord-324395-v5uiuhih	152	22	-	-	HYPH
cord-324395-v5uiuhih	152	23	linked	link	VBN
cord-324395-v5uiuhih	152	24	glycans	glycan	NNS
cord-324395-v5uiuhih	152	25	shown	show	VBN
cord-324395-v5uiuhih	152	26	above	above	IN
cord-324395-v5uiuhih	152	27	or	or	CC
cord-324395-v5uiuhih	152	28	below	below	IN
cord-324395-v5uiuhih	152	29	the	the	DT
cord-324395-v5uiuhih	152	30	sequon	sequon	NN
cord-324395-v5uiuhih	152	31	(	(	-LRB-
cord-324395-v5uiuhih	152	32	upper	upper	NNP
cord-324395-v5uiuhih	152	33	left	left	NNP
cord-324395-v5uiuhih	152	34	triangular	triangular	JJ
cord-324395-v5uiuhih	152	35	panel	panel	NN
cord-324395-v5uiuhih	152	36	)	)	-RRB-
cord-324395-v5uiuhih	152	37	.	.	.
cord-324395-v5uiuhih	153	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	153	2	was	be	VBD
cord-324395-v5uiuhih	153	3	used	use	VBN
cord-324395-v5uiuhih	153	4	to	to	TO
cord-324395-v5uiuhih	153	5	produce	produce	VB
cord-324395-v5uiuhih	153	6	a	a	DT
cord-324395-v5uiuhih	153	7	complex	complex	JJ
cord-324395-v5uiuhih	153	8	glycoform	glycoform	NN
cord-324395-v5uiuhih	153	9	variant	variant	NN
cord-324395-v5uiuhih	153	10	of	of	IN
cord-324395-v5uiuhih	153	11	the	the	DT
cord-324395-v5uiuhih	153	12	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	153	13	Env	Env	NNP
cord-324395-v5uiuhih	153	14	trimer	trimer	NN
cord-324395-v5uiuhih	153	15	by	by	IN
cord-324395-v5uiuhih	153	16	modeling	model	VBG
cord-324395-v5uiuhih	153	17	glycans	glycan	NNS
cord-324395-v5uiuhih	153	18	ab	ab	NN
cord-324395-v5uiuhih	153	19	initio	initio	NNP
cord-324395-v5uiuhih	153	20	or	or	CC
cord-324395-v5uiuhih	153	21	extending	extend	VBG
cord-324395-v5uiuhih	153	22	existing	exist	VBG
cord-324395-v5uiuhih	153	23	glycans	glycan	NNS
cord-324395-v5uiuhih	153	24	(	(	-LRB-
cord-324395-v5uiuhih	153	25	lower	low	JJR
cord-324395-v5uiuhih	153	26	right	right	JJ
cord-324395-v5uiuhih	153	27	triangular	triangular	JJ
cord-324395-v5uiuhih	153	28	panel	panel	NN
cord-324395-v5uiuhih	153	29	)	)	-RRB-
cord-324395-v5uiuhih	153	30	by	by	IN
cord-324395-v5uiuhih	153	31	a	a	DT
cord-324395-v5uiuhih	153	32	hexagon	hexagon	NN
cord-324395-v5uiuhih	153	33	.	.	.
cord-324395-v5uiuhih	154	1	Full	full	JJ
cord-324395-v5uiuhih	154	2	circles	circle	NNS
cord-324395-v5uiuhih	154	3	connecting	connect	VBG
cord-324395-v5uiuhih	154	4	classes	class	NNS
cord-324395-v5uiuhih	154	5	indicate	indicate	VBP
cord-324395-v5uiuhih	154	6	a	a	DT
cord-324395-v5uiuhih	154	7	class	class	NN
cord-324395-v5uiuhih	154	8	that	that	WDT
cord-324395-v5uiuhih	154	9	contains	contain	VBZ
cord-324395-v5uiuhih	154	10	an	an	DT
cord-324395-v5uiuhih	154	11	instance	instance	NN
cord-324395-v5uiuhih	154	12	of	of	IN
cord-324395-v5uiuhih	154	13	the	the	DT
cord-324395-v5uiuhih	154	14	previous	previous	JJ
cord-324395-v5uiuhih	154	15	one	one	CD
cord-324395-v5uiuhih	154	16	as	as	IN
cord-324395-v5uiuhih	154	17	an	an	DT
cord-324395-v5uiuhih	154	18	attribute	attribute	NN
cord-324395-v5uiuhih	154	19	,	,	,
cord-324395-v5uiuhih	154	20	e.g.	e.g.	IN
cord-324395-v5uiuhih	154	21	instances	instance	NNS
cord-324395-v5uiuhih	154	22	of	of	IN
cord-324395-v5uiuhih	154	23	Molecule	Molecule	NNP
cord-324395-v5uiuhih	154	24	and	and	CC
cord-324395-v5uiuhih	154	25	MoleculeBuilder	MoleculeBuilder	NNP
cord-324395-v5uiuhih	154	26	are	be	VBP
cord-324395-v5uiuhih	154	27	attributes	attribute	NNS
cord-324395-v5uiuhih	154	28	of	of	IN
cord-324395-v5uiuhih	154	29	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	154	30	.	.	.
cord-324395-v5uiuhih	155	1	Several	several	JJ
cord-324395-v5uiuhih	155	2	attributes	attribute	NNS
cord-324395-v5uiuhih	155	3	from	from	IN
cord-324395-v5uiuhih	155	4	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	155	5	can	can	MD
cord-324395-v5uiuhih	155	6	be	be	VB
cord-324395-v5uiuhih	155	7	directly	directly	RB
cord-324395-v5uiuhih	155	8	shared	share	VBN
cord-324395-v5uiuhih	155	9	with	with	IN
cord-324395-v5uiuhih	155	10	Drawer	Drawer	NNP
cord-324395-v5uiuhih	155	11	and	and	CC
cord-324395-v5uiuhih	155	12	Sampler	Sampler	NNP
cord-324395-v5uiuhih	155	13	(	(	-LRB-
cord-324395-v5uiuhih	155	14	white	white	JJ
cord-324395-v5uiuhih	155	15	squares	square	NNS
cord-324395-v5uiuhih	155	16	)	)	-RRB-
cord-324395-v5uiuhih	155	17	.	.	.
cord-324395-v5uiuhih	156	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	156	2	can	can	MD
cord-324395-v5uiuhih	156	3	parse	parse	VB
cord-324395-v5uiuhih	156	4	a	a	DT
cord-324395-v5uiuhih	156	5	PDB	PDB	NNP
cord-324395-v5uiuhih	156	6	file	file	NN
cord-324395-v5uiuhih	156	7	of	of	IN
cord-324395-v5uiuhih	156	8	a	a	DT
cord-324395-v5uiuhih	156	9	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	156	10	and	and	CC
cord-324395-v5uiuhih	156	11	identify	identify	VB
cord-324395-v5uiuhih	156	12	all	all	PDT
cord-324395-v5uiuhih	156	13	the	the	DT
cord-324395-v5uiuhih	156	14	sequons	sequon	NNS
cord-324395-v5uiuhih	156	15	(	(	-LRB-
cord-324395-v5uiuhih	156	16	orange	orange	NNP
cord-324395-v5uiuhih	156	17	rhombus	rhombus	NN
cord-324395-v5uiuhih	156	18	)	)	-RRB-
cord-324395-v5uiuhih	156	19	.	.	.
cord-324395-v5uiuhih	157	1	The	the	DT
cord-324395-v5uiuhih	157	2	glycans	glycan	NNS
cord-324395-v5uiuhih	157	3	(	(	-LRB-
cord-324395-v5uiuhih	157	4	blue	blue	JJ
cord-324395-v5uiuhih	157	5	squares	square	NNS
cord-324395-v5uiuhih	157	6	and	and	CC
cord-324395-v5uiuhih	157	7	green	green	JJ
cord-324395-v5uiuhih	157	8	circles	circle	NNS
cord-324395-v5uiuhih	157	9	)	)	-RRB-
cord-324395-v5uiuhih	157	10	will	will	MD
cord-324395-v5uiuhih	157	11	be	be	VB
cord-324395-v5uiuhih	157	12	extracted	extract	VBN
cord-324395-v5uiuhih	157	13	and	and	CC
cord-324395-v5uiuhih	157	14	saved	save	VBN
cord-324395-v5uiuhih	157	15	as	as	IN
cord-324395-v5uiuhih	157	16	Molecule	Molecule	NNP
cord-324395-v5uiuhih	157	17	instances	instance	NNS
cord-324395-v5uiuhih	157	18	.	.	.
cord-324395-v5uiuhih	158	1	Glycans	glycan	NNS
cord-324395-v5uiuhih	158	2	at	at	IN
cord-324395-v5uiuhih	158	3	each	each	DT
cord-324395-v5uiuhih	158	4	sequon	sequon	NN
cord-324395-v5uiuhih	158	5	can	can	MD
cord-324395-v5uiuhih	158	6	then	then	RB
cord-324395-v5uiuhih	158	7	be	be	VB
cord-324395-v5uiuhih	158	8	built	build	VBN
cord-324395-v5uiuhih	158	9	,	,	,
cord-324395-v5uiuhih	158	10	modified	modify	VBN
cord-324395-v5uiuhih	158	11	or	or	CC
cord-324395-v5uiuhih	158	12	identified	identify	VBN
cord-324395-v5uiuhih	158	13	.	.	.
cord-324395-v5uiuhih	159	1	Figure	figure	NN
cord-324395-v5uiuhih	159	2	S2	s2	NN
cord-324395-v5uiuhih	159	3	.	.	.
cord-324395-v5uiuhih	160	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	160	2	Graphical	Graphical	NNP
cord-324395-v5uiuhih	160	3	User	User	NNP
cord-324395-v5uiuhih	160	4	Interface	Interface	NNP
cord-324395-v5uiuhih	160	5	.	.	.
cord-324395-v5uiuhih	161	1	a	a	LS
cord-324395-v5uiuhih	161	2	)	)	-RRB-
cord-324395-v5uiuhih	162	1	The	the	DT
cord-324395-v5uiuhih	162	2	main	main	JJ
cord-324395-v5uiuhih	162	3	window	window	NN
cord-324395-v5uiuhih	162	4	is	be	VBZ
cord-324395-v5uiuhih	162	5	used	use	VBN
cord-324395-v5uiuhih	162	6	to	to	TO
cord-324395-v5uiuhih	162	7	import	import	VB
cord-324395-v5uiuhih	162	8	a	a	DT
cord-324395-v5uiuhih	162	9	PDB	PDB	NNP
cord-324395-v5uiuhih	162	10	file	file	NN
cord-324395-v5uiuhih	162	11	of	of	IN
cord-324395-v5uiuhih	162	12	a	a	DT
cord-324395-v5uiuhih	162	13	glycoprotein	glycoprotein	NN
cord-324395-v5uiuhih	162	14	.	.	.
cord-324395-v5uiuhih	163	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	163	2	will	will	MD
cord-324395-v5uiuhih	163	3	produce	produce	VB
cord-324395-v5uiuhih	163	4	a	a	DT
cord-324395-v5uiuhih	163	5	symbolic	symbolic	JJ
cord-324395-v5uiuhih	163	6	representation	representation	NN
cord-324395-v5uiuhih	163	7	(	(	-LRB-
cord-324395-v5uiuhih	163	8	orange	orange	NNP
cord-324395-v5uiuhih	163	9	dashed	dash	VBD
cord-324395-v5uiuhih	163	10	line	line	NN
cord-324395-v5uiuhih	163	11	rectangle	rectangle	NN
cord-324395-v5uiuhih	163	12	)	)	-RRB-
cord-324395-v5uiuhih	163	13	.	.	.
cord-324395-v5uiuhih	164	1	A	a	DT
cord-324395-v5uiuhih	164	2	specific	specific	JJ
cord-324395-v5uiuhih	164	3	sequon	sequon	NN
cord-324395-v5uiuhih	164	4	can	can	MD
cord-324395-v5uiuhih	164	5	be	be	VB
cord-324395-v5uiuhih	164	6	selected	select	VBN
cord-324395-v5uiuhih	164	7	in	in	IN
cord-324395-v5uiuhih	164	8	the	the	DT
cord-324395-v5uiuhih	164	9	right	right	JJ
cord-324395-v5uiuhih	164	10	panel	panel	NN
cord-324395-v5uiuhih	164	11	(	(	-LRB-
cord-324395-v5uiuhih	164	12	purple	purple	JJ
cord-324395-v5uiuhih	164	13	dashed	dash	VBD
cord-324395-v5uiuhih	164	14	line	line	NN
cord-324395-v5uiuhih	164	15	rectangle	rectangle	NN
cord-324395-v5uiuhih	164	16	)	)	-RRB-
cord-324395-v5uiuhih	164	17	.	.	.
cord-324395-v5uiuhih	165	1	The	the	DT
cord-324395-v5uiuhih	165	2	glycan	glycan	NN
cord-324395-v5uiuhih	165	3	can	can	MD
cord-324395-v5uiuhih	165	4	be	be	VB
cord-324395-v5uiuhih	165	5	modified	modify	VBN
cord-324395-v5uiuhih	165	6	by	by	IN
cord-324395-v5uiuhih	165	7	clicking	click	VBG
cord-324395-v5uiuhih	165	8	on	on	IN
cord-324395-v5uiuhih	165	9	the	the	DT
cord-324395-v5uiuhih	165	10	symbolic	symbolic	JJ
cord-324395-v5uiuhih	165	11	representation	representation	NN
cord-324395-v5uiuhih	165	12	.	.	.
cord-324395-v5uiuhih	166	1	b	b	LS
cord-324395-v5uiuhih	166	2	)	)	-RRB-
cord-324395-v5uiuhih	167	1	The	the	DT
cord-324395-v5uiuhih	167	2	user	user	NN
cord-324395-v5uiuhih	167	3	can	can	MD
cord-324395-v5uiuhih	167	4	select	select	VB
cord-324395-v5uiuhih	167	5	a	a	DT
cord-324395-v5uiuhih	167	6	glycan	glycan	NN
cord-324395-v5uiuhih	167	7	from	from	IN
cord-324395-v5uiuhih	167	8	the	the	DT
cord-324395-v5uiuhih	167	9	common	common	JJ
cord-324395-v5uiuhih	167	10	library	library	NN
cord-324395-v5uiuhih	167	11	or	or	CC
cord-324395-v5uiuhih	167	12	a	a	DT
cord-324395-v5uiuhih	167	13	library	library	NN
cord-324395-v5uiuhih	167	14	that	that	WDT
cord-324395-v5uiuhih	167	15	they	-PRON-	PRP
cord-324395-v5uiuhih	167	16	created	create	VBD
cord-324395-v5uiuhih	167	17	.	.	.
cord-324395-v5uiuhih	168	1	The	the	DT
cord-324395-v5uiuhih	168	2	selected	select	VBN
cord-324395-v5uiuhih	168	3	glycan	glycan	NN
cord-324395-v5uiuhih	168	4	is	be	VBZ
cord-324395-v5uiuhih	168	5	highlighted	highlight	VBN
cord-324395-v5uiuhih	168	6	with	with	IN
cord-324395-v5uiuhih	168	7	a	a	DT
cord-324395-v5uiuhih	168	8	red	red	JJ
cord-324395-v5uiuhih	168	9	square	square	NN
cord-324395-v5uiuhih	168	10	.	.	.
cord-324395-v5uiuhih	169	1	Example	example	NN
cord-324395-v5uiuhih	169	2	S1	S1	NNP
cord-324395-v5uiuhih	169	3	.	.	.
cord-324395-v5uiuhih	170	1	Building	build	VBG
cord-324395-v5uiuhih	170	2	a	a	DT
cord-324395-v5uiuhih	170	3	glycan	glycan	NN
cord-324395-v5uiuhih	170	4	.	.	.
cord-324395-v5uiuhih	171	1	The	the	DT
cord-324395-v5uiuhih	171	2	structure	structure	NN
cord-324395-v5uiuhih	171	3	of	of	IN
cord-324395-v5uiuhih	171	4	an	an	DT
cord-324395-v5uiuhih	171	5	N	n	CD
cord-324395-v5uiuhih	171	6	-	-	HYPH
cord-324395-v5uiuhih	171	7	Acetyl	Acetyl	NNP
cord-324395-v5uiuhih	171	8	-	-	HYPH
cord-324395-v5uiuhih	171	9	D	D	NNP
cord-324395-v5uiuhih	171	10	-	-	HYPH
cord-324395-v5uiuhih	171	11	Glucosamine	Glucosamine	NNP
cord-324395-v5uiuhih	171	12	will	will	MD
cord-324395-v5uiuhih	171	13	be	be	VB
cord-324395-v5uiuhih	171	14	imported	import	VBN
cord-324395-v5uiuhih	171	15	as	as	IN
cord-324395-v5uiuhih	171	16	a	a	DT
cord-324395-v5uiuhih	171	17	Molecule	Molecule	NNP
cord-324395-v5uiuhih	171	18	instance	instance	NN
cord-324395-v5uiuhih	171	19	.	.	.
cord-324395-v5uiuhih	172	1	All	all	DT
cord-324395-v5uiuhih	172	2	missing	miss	VBG
cord-324395-v5uiuhih	172	3	atoms	atom	NNS
cord-324395-v5uiuhih	172	4	will	will	MD
cord-324395-v5uiuhih	172	5	be	be	VB
cord-324395-v5uiuhih	172	6	added	add	VBN
cord-324395-v5uiuhih	172	7	according	accord	VBG
cord-324395-v5uiuhih	172	8	to	to	IN
cord-324395-v5uiuhih	172	9	the	the	DT
cord-324395-v5uiuhih	172	10	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	172	11	force	force	NN
cord-324395-v5uiuhih	172	12	field	field	NN
cord-324395-v5uiuhih	172	13	.	.	.
cord-324395-v5uiuhih	173	1	A	a	DT
cord-324395-v5uiuhih	173	2	second	second	JJ
cord-324395-v5uiuhih	173	3	N	N	NNP
cord-324395-v5uiuhih	173	4	-	-	HYPH
cord-324395-v5uiuhih	173	5	Acetyl	Acetyl	NNP
cord-324395-v5uiuhih	173	6	-	-	HYPH
cord-324395-v5uiuhih	173	7	D	D	NNP
cord-324395-v5uiuhih	173	8	-	-	HYPH
cord-324395-v5uiuhih	173	9	Glucosamine	Glucosamine	NNP
cord-324395-v5uiuhih	173	10	will	will	MD
cord-324395-v5uiuhih	173	11	then	then	RB
cord-324395-v5uiuhih	173	12	be	be	VB
cord-324395-v5uiuhih	173	13	linked	link	VBN
cord-324395-v5uiuhih	173	14	through	through	IN
cord-324395-v5uiuhih	173	15	a	a	DT
cord-324395-v5uiuhih	173	16	1	1	CD
cord-324395-v5uiuhih	173	17	-	-	SYM
cord-324395-v5uiuhih	173	18	4	4	CD
cord-324395-v5uiuhih	173	19	glycosidic	glycosidic	JJ
cord-324395-v5uiuhih	173	20	bond	bond	NN
cord-324395-v5uiuhih	173	21	.	.	.
cord-324395-v5uiuhih	174	1	Finally	finally	RB
cord-324395-v5uiuhih	174	2	,	,	,
cord-324395-v5uiuhih	174	3	an	an	DT
cord-324395-v5uiuhih	174	4	Alpha	alpha	NN
cord-324395-v5uiuhih	174	5	-	-	HYPH
cord-324395-v5uiuhih	174	6	D	d	NN
cord-324395-v5uiuhih	174	7	-	-	HYPH
cord-324395-v5uiuhih	174	8	added	add	VBN
cord-324395-v5uiuhih	174	9	according	accord	VBG
cord-324395-v5uiuhih	174	10	to	to	IN
cord-324395-v5uiuhih	174	11	the	the	DT
cord-324395-v5uiuhih	174	12	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	174	13	force	force	NN
cord-324395-v5uiuhih	174	14	field	field	NN
cord-324395-v5uiuhih	174	15	.	.	.
cord-324395-v5uiuhih	175	1	A	a	DT
cord-324395-v5uiuhih	175	2	second	second	JJ
cord-324395-v5uiuhih	175	3	N	N	NNP
cord-324395-v5uiuhih	175	4	-	-	HYPH
cord-324395-v5uiuhih	175	5	Acetyl	Acetyl	NNP
cord-324395-v5uiuhih	175	6	-	-	HYPH
cord-324395-v5uiuhih	175	7	D	D	NNP
cord-324395-v5uiuhih	175	8	-	-	HYPH
cord-324395-v5uiuhih	175	9	Glucosamine	Glucosamine	NNP
cord-324395-v5uiuhih	175	10	will	will	MD
cord-324395-v5uiuhih	175	11	then	then	RB
cord-324395-v5uiuhih	175	12	be	be	VB
cord-324395-v5uiuhih	175	13	linked	link	VBN
cord-324395-v5uiuhih	175	14	through	through	IN
cord-324395-v5uiuhih	175	15	a	a	DT
cord-324395-v5uiuhih	175	16	1	1	CD
cord-324395-v5uiuhih	175	17	-	-	SYM
cord-324395-v5uiuhih	175	18	4	4	CD
cord-324395-v5uiuhih	175	19	glycosidic	glycosidic	JJ
cord-324395-v5uiuhih	175	20	bond	bond	NN
cord-324395-v5uiuhih	175	21	.	.	.
cord-324395-v5uiuhih	176	1	Finally	finally	RB
cord-324395-v5uiuhih	176	2	,	,	,
cord-324395-v5uiuhih	176	3	an	an	DT
cord-324395-v5uiuhih	176	4	Alpha	alpha	NN
cord-324395-v5uiuhih	176	5	-	-	HYPH
cord-324395-v5uiuhih	176	6	D	D	NNP
cord-324395-v5uiuhih	176	7	-	-	HYPH
cord-324395-v5uiuhih	176	8	Mannosewill	Mannosewill	NNP
cord-324395-v5uiuhih	176	9	be	be	VB
cord-324395-v5uiuhih	176	10	built	build	VBN
cord-324395-v5uiuhih	176	11	ab	ab	FW
cord-324395-v5uiuhih	176	12	initio	initio	NNP
cord-324395-v5uiuhih	176	13	and	and	CC
cord-324395-v5uiuhih	176	14	saved	save	VBN
cord-324395-v5uiuhih	176	15	to	to	IN
cord-324395-v5uiuhih	176	16	a	a	DT
cord-324395-v5uiuhih	176	17	PDB	PDB	NNP
cord-324395-v5uiuhih	176	18	file	file	NN
cord-324395-v5uiuhih	176	19	.	.	.
cord-324395-v5uiuhih	177	1	Example	example	NN
cord-324395-v5uiuhih	177	2	S2	S2	NNP
cord-324395-v5uiuhih	177	3	.	.	.
cord-324395-v5uiuhih	178	1	Importing	import	VBG
cord-324395-v5uiuhih	178	2	,	,	,
cord-324395-v5uiuhih	178	3	identifying	identify	VBG
cord-324395-v5uiuhih	178	4	and	and	CC
cord-324395-v5uiuhih	178	5	editing	editing	NN
cord-324395-v5uiuhih	178	6	of	of	IN
cord-324395-v5uiuhih	178	7	a	a	DT
cord-324395-v5uiuhih	178	8	glycan	glycan	NN
cord-324395-v5uiuhih	178	9	.	.	.
cord-324395-v5uiuhih	179	1	The	the	DT
cord-324395-v5uiuhih	179	2	structure	structure	NN
cord-324395-v5uiuhih	179	3	of	of	IN
cord-324395-v5uiuhih	179	4	a	a	DT
cord-324395-v5uiuhih	179	5	mannose	mannose	NN
cord-324395-v5uiuhih	179	6	9	9	CD
cord-324395-v5uiuhih	179	7	will	will	MD
cord-324395-v5uiuhih	179	8	be	be	VB
cord-324395-v5uiuhih	179	9	imported	import	VBN
cord-324395-v5uiuhih	179	10	as	as	IN
cord-324395-v5uiuhih	179	11	a	a	DT
cord-324395-v5uiuhih	179	12	Molecule	Molecule	NNP
cord-324395-v5uiuhih	179	13	instance	instance	NN
cord-324395-v5uiuhih	179	14	.	.	.
cord-324395-v5uiuhih	180	1	A	a	DT
cord-324395-v5uiuhih	180	2	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	180	3	instance	instance	NN
cord-324395-v5uiuhih	180	4	will	will	MD
cord-324395-v5uiuhih	180	5	then	then	RB
cord-324395-v5uiuhih	180	6	identify	identify	VB
cord-324395-v5uiuhih	180	7	it	-PRON-	PRP
cord-324395-v5uiuhih	180	8	against	against	IN
cord-324395-v5uiuhih	180	9	a	a	DT
cord-324395-v5uiuhih	180	10	database	database	NN
cord-324395-v5uiuhih	180	11	of	of	IN
cord-324395-v5uiuhih	180	12	known	know	VBN
cord-324395-v5uiuhih	180	13	structures	structure	NNS
cord-324395-v5uiuhih	180	14	.	.	.
cord-324395-v5uiuhih	181	1	Finally	finally	RB
cord-324395-v5uiuhih	181	2	,	,	,
cord-324395-v5uiuhih	181	3	the	the	DT
cord-324395-v5uiuhih	181	4	Molecule	Molecule	NNP
cord-324395-v5uiuhih	181	5	will	will	MD
cord-324395-v5uiuhih	181	6	be	be	VB
cord-324395-v5uiuhih	181	7	trimmed	trim	VBN
cord-324395-v5uiuhih	181	8	down	down	RP
cord-324395-v5uiuhih	181	9	to	to	IN
cord-324395-v5uiuhih	181	10	a	a	DT
cord-324395-v5uiuhih	181	11	mannose	mannose	NN
cord-324395-v5uiuhih	181	12	6	6	CD
cord-324395-v5uiuhih	181	13	.	.	.
cord-324395-v5uiuhih	181	14	 	 	_SP
cord-324395-v5uiuhih	182	1	On	on	IN
cord-324395-v5uiuhih	182	2	the	the	DT
cord-324395-v5uiuhih	182	3	frequency	frequency	NN
cord-324395-v5uiuhih	182	4	of	of	IN
cord-324395-v5uiuhih	182	5	protein	protein	NN
cord-324395-v5uiuhih	182	6	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	7	,	,	,
cord-324395-v5uiuhih	182	8	as	as	IN
cord-324395-v5uiuhih	182	9	deduced	deduce	VBN
cord-324395-v5uiuhih	182	10	from	from	IN
cord-324395-v5uiuhih	182	11	analysis	analysis	NN
cord-324395-v5uiuhih	182	12	of	of	IN
cord-324395-v5uiuhih	182	13	the	the	DT
cord-324395-v5uiuhih	182	14	SWISS	swiss	JJ
cord-324395-v5uiuhih	182	15	-	-	HYPH
cord-324395-v5uiuhih	182	16	PROT	prot	NN
cord-324395-v5uiuhih	182	17	database	database	NN
cord-324395-v5uiuhih	182	18	Unraveling	unravel	VBG
cord-324395-v5uiuhih	182	19	the	the	DT
cord-324395-v5uiuhih	182	20	mechanism	mechanism	NN
cord-324395-v5uiuhih	182	21	of	of	IN
cord-324395-v5uiuhih	182	22	protein	protein	NN
cord-324395-v5uiuhih	182	23	N	n	CD
cord-324395-v5uiuhih	182	24	-	-	HYPH
cord-324395-v5uiuhih	182	25	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	26	Protein	protein	NN
cord-324395-v5uiuhih	182	27	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	28	:	:	:
cord-324395-v5uiuhih	182	29	nature	nature	NN
cord-324395-v5uiuhih	182	30	,	,	,
cord-324395-v5uiuhih	182	31	distribution	distribution	NN
cord-324395-v5uiuhih	182	32	,	,	,
cord-324395-v5uiuhih	182	33	enzymatic	enzymatic	JJ
cord-324395-v5uiuhih	182	34	formation	formation	NN
cord-324395-v5uiuhih	182	35	,	,	,
cord-324395-v5uiuhih	182	36	and	and	CC
cord-324395-v5uiuhih	182	37	disease	disease	NN
cord-324395-v5uiuhih	182	38	implications	implication	NNS
cord-324395-v5uiuhih	182	39	of	of	IN
cord-324395-v5uiuhih	182	40	glycopeptides	glycopeptides	NNP
cord-324395-v5uiuhih	182	41	bonds	bond	NNS
cord-324395-v5uiuhih	182	42	Sequence	sequence	NN
cord-324395-v5uiuhih	182	43	differences	difference	NNS
cord-324395-v5uiuhih	182	44	between	between	IN
cord-324395-v5uiuhih	182	45	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	182	46	and	and	CC
cord-324395-v5uiuhih	182	47	non	non	JJ
cord-324395-v5uiuhih	182	48	-	-	JJ
cord-324395-v5uiuhih	182	49	glycosylated	glycosylated	JJ
cord-324395-v5uiuhih	182	50	Asn	Asn	NNP
cord-324395-v5uiuhih	182	51	-	-	HYPH
cord-324395-v5uiuhih	182	52	X	X	NNP
cord-324395-v5uiuhih	182	53	-	-	HYPH
cord-324395-v5uiuhih	182	54	Thr	Thr	NNP
cord-324395-v5uiuhih	182	55	/	/	SYM
cord-324395-v5uiuhih	182	56	Ser	ser	JJ
cord-324395-v5uiuhih	182	57	acceptor	acceptor	NN
cord-324395-v5uiuhih	182	58	sites	site	NNS
cord-324395-v5uiuhih	182	59	:	:	:
cord-324395-v5uiuhih	182	60	implications	implication	NNS
cord-324395-v5uiuhih	182	61	for	for	IN
cord-324395-v5uiuhih	182	62	protein	protein	NN
cord-324395-v5uiuhih	182	63	engineering	engineering	NN
cord-324395-v5uiuhih	182	64	Glycosylation	Glycosylation	NNP
cord-324395-v5uiuhih	182	65	-	-	HYPH
cord-324395-v5uiuhih	182	66	directed	direct	VBN
cord-324395-v5uiuhih	182	67	quality	quality	NN
cord-324395-v5uiuhih	182	68	control	control	NN
cord-324395-v5uiuhih	182	69	of	of	IN
cord-324395-v5uiuhih	182	70	protein	protein	NN
cord-324395-v5uiuhih	182	71	folding	folding	NN
cord-324395-v5uiuhih	182	72	Glycosylation	Glycosylation	NNP
cord-324395-v5uiuhih	182	73	as	as	IN
cord-324395-v5uiuhih	182	74	a	a	DT
cord-324395-v5uiuhih	182	75	main	main	JJ
cord-324395-v5uiuhih	182	76	regulator	regulator	NN
cord-324395-v5uiuhih	182	77	of	of	IN
cord-324395-v5uiuhih	182	78	growth	growth	NN
cord-324395-v5uiuhih	182	79	and	and	CC
cord-324395-v5uiuhih	182	80	death	death	NN
cord-324395-v5uiuhih	182	81	factor	factor	NN
cord-324395-v5uiuhih	182	82	receptors	receptor	NNS
cord-324395-v5uiuhih	182	83	signaling	signal	VBG
cord-324395-v5uiuhih	182	84	Cell	cell	NN
cord-324395-v5uiuhih	182	85	migration	migration	NN
cord-324395-v5uiuhih	182	86	-	-	:
cord-324395-v5uiuhih	182	87	the	the	DT
cord-324395-v5uiuhih	182	88	role	role	NN
cord-324395-v5uiuhih	182	89	of	of	IN
cord-324395-v5uiuhih	182	90	integrin	integrin	JJ
cord-324395-v5uiuhih	182	91	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	92	Similarities	similarity	NNS
cord-324395-v5uiuhih	182	93	and	and	CC
cord-324395-v5uiuhih	182	94	differences	difference	NNS
cord-324395-v5uiuhih	182	95	in	in	IN
cord-324395-v5uiuhih	182	96	the	the	DT
cord-324395-v5uiuhih	182	97	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	98	mechanisms	mechanism	NNS
cord-324395-v5uiuhih	182	99	in	in	IN
cord-324395-v5uiuhih	182	100	prokaryotes	prokaryote	NNS
cord-324395-v5uiuhih	182	101	and	and	CC
cord-324395-v5uiuhih	182	102	eukaryotes	eukaryote	NNS
cord-324395-v5uiuhih	182	103	Insights	insight	NNS
cord-324395-v5uiuhih	182	104	into	into	IN
cord-324395-v5uiuhih	182	105	bacterial	bacterial	JJ
cord-324395-v5uiuhih	182	106	protein	protein	NN
cord-324395-v5uiuhih	182	107	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	108	in	in	IN
cord-324395-v5uiuhih	182	109	human	human	JJ
cord-324395-v5uiuhih	182	110	microbiota	microbiota	NN
cord-324395-v5uiuhih	182	111	Playing	play	VBG
cord-324395-v5uiuhih	182	112	hide	hide	VB
cord-324395-v5uiuhih	182	113	and	and	CC
cord-324395-v5uiuhih	182	114	seek	seek	VB
cord-324395-v5uiuhih	182	115	:	:	:
cord-324395-v5uiuhih	182	116	how	how	WRB
cord-324395-v5uiuhih	182	117	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	118	of	of	IN
cord-324395-v5uiuhih	182	119	the	the	DT
cord-324395-v5uiuhih	182	120	influenza	influenza	NN
cord-324395-v5uiuhih	182	121	virus	virus	NN
cord-324395-v5uiuhih	182	122	hemagglutinin	hemagglutinin	NNS
cord-324395-v5uiuhih	182	123	can	can	MD
cord-324395-v5uiuhih	182	124	modulate	modulate	VB
cord-324395-v5uiuhih	182	125	the	the	DT
cord-324395-v5uiuhih	182	126	immune	immune	JJ
cord-324395-v5uiuhih	182	127	response	response	NN
cord-324395-v5uiuhih	182	128	to	to	IN
cord-324395-v5uiuhih	182	129	infection	infection	NN
cord-324395-v5uiuhih	182	130	Virus	virus	NN
cord-324395-v5uiuhih	182	131	glycosylation	glycosylation	NN
cord-324395-v5uiuhih	182	132	:	:	:
cord-324395-v5uiuhih	182	133	role	role	NN
cord-324395-v5uiuhih	182	134	in	in	IN
cord-324395-v5uiuhih	182	135	virulence	virulence	NN
cord-324395-v5uiuhih	182	136	and	and	CC
cord-324395-v5uiuhih	182	137	immune	immune	JJ
cord-324395-v5uiuhih	182	138	interactions	interaction	NNS
cord-324395-v5uiuhih	182	139	Implementation	implementation	NN
cord-324395-v5uiuhih	182	140	of	of	IN
cord-324395-v5uiuhih	182	141	GlycanBuilder	GlycanBuilder	NNP
cord-324395-v5uiuhih	182	142	to	to	TO
cord-324395-v5uiuhih	182	143	draw	draw	VB
cord-324395-v5uiuhih	182	144	a	a	DT
cord-324395-v5uiuhih	182	145	wide	wide	JJ
cord-324395-v5uiuhih	182	146	variety	variety	NN
cord-324395-v5uiuhih	182	147	of	of	IN
cord-324395-v5uiuhih	182	148	ambiguous	ambiguous	JJ
cord-324395-v5uiuhih	182	149	glycans	glycan	NNS
cord-324395-v5uiuhih	182	150	A	a	DT
cord-324395-v5uiuhih	182	151	molecular	molecular	JJ
cord-324395-v5uiuhih	182	152	builder	builder	NN
cord-324395-v5uiuhih	182	153	for	for	IN
cord-324395-v5uiuhih	182	154	carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	182	155	:	:	:
cord-324395-v5uiuhih	182	156	application	application	NN
cord-324395-v5uiuhih	182	157	to	to	IN
cord-324395-v5uiuhih	182	158	polysaccharides	polysaccharide	NNS
cord-324395-v5uiuhih	182	159	and	and	CC
cord-324395-v5uiuhih	182	160	complex	complex	JJ
cord-324395-v5uiuhih	182	161	carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	182	162	doGlycans	doglycan	NNS
cord-324395-v5uiuhih	182	163	-	-	HYPH
cord-324395-v5uiuhih	182	164	tools	tool	NNS
cord-324395-v5uiuhih	182	165	for	for	IN
cord-324395-v5uiuhih	182	166	preparing	prepare	VBG
cord-324395-v5uiuhih	182	167	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	182	168	structures	structure	NNS
cord-324395-v5uiuhih	182	169	for	for	IN
cord-324395-v5uiuhih	182	170	atomistic	atomistic	JJ
cord-324395-v5uiuhih	182	171	simulations	simulation	NNS
cord-324395-v5uiuhih	182	172	of	of	IN
cord-324395-v5uiuhih	182	173	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	182	174	,	,	,
cord-324395-v5uiuhih	182	175	glycolipids	glycolipid	NNS
cord-324395-v5uiuhih	182	176	,	,	,
cord-324395-v5uiuhih	182	177	and	and	CC
cord-324395-v5uiuhih	182	178	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	182	179	polymers	polymer	NNS
cord-324395-v5uiuhih	182	180	for	for	IN
cord-324395-v5uiuhih	182	181	GROMACS	GROMACS	NNP
cord-324395-v5uiuhih	182	182	SWEET	SWEET	NNP
cord-324395-v5uiuhih	182	183	-WWW	-www	RBS
cord-324395-v5uiuhih	182	184	-	-	HYPH
cord-324395-v5uiuhih	182	185	based	base	VBN
cord-324395-v5uiuhih	182	186	rapid	rapid	JJ
cord-324395-v5uiuhih	182	187	3D	3D	NNP
cord-324395-v5uiuhih	182	188	construction	construction	NN
cord-324395-v5uiuhih	182	189	of	of	IN
cord-324395-v5uiuhih	182	190	oligo	oligo	NN
cord-324395-v5uiuhih	182	191	-	-	:
cord-324395-v5uiuhih	182	192	and	and	CC
cord-324395-v5uiuhih	182	193	polysaccharides	polysaccharide	NNS
cord-324395-v5uiuhih	183	1	GLYCAM	GLYCAM	NNP
cord-324395-v5uiuhih	183	2	Glycan	Glycan	NNP
cord-324395-v5uiuhih	183	3	reader	reader	NN
cord-324395-v5uiuhih	183	4	:	:	:
cord-324395-v5uiuhih	183	5	automated	automate	VBN
cord-324395-v5uiuhih	183	6	sugar	sugar	NN
cord-324395-v5uiuhih	183	7	identification	identification	NN
cord-324395-v5uiuhih	183	8	and	and	CC
cord-324395-v5uiuhih	183	9	simulation	simulation	NN
cord-324395-v5uiuhih	183	10	preparation	preparation	NN
cord-324395-v5uiuhih	183	11	for	for	IN
cord-324395-v5uiuhih	183	12	carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	183	13	and	and	CC
cord-324395-v5uiuhih	183	14	glycoproteins	glycoprotein	NNS
cord-324395-v5uiuhih	183	15	Glycan	glycan	JJ
cord-324395-v5uiuhih	183	16	reader	reader	NN
cord-324395-v5uiuhih	183	17	is	be	VBZ
cord-324395-v5uiuhih	183	18	improved	improve	VBN
cord-324395-v5uiuhih	183	19	to	to	TO
cord-324395-v5uiuhih	183	20	recognize	recognize	VB
cord-324395-v5uiuhih	183	21	most	most	JJS
cord-324395-v5uiuhih	183	22	sugar	sugar	NN
cord-324395-v5uiuhih	183	23	types	type	NNS
cord-324395-v5uiuhih	183	24	and	and	CC
cord-324395-v5uiuhih	183	25	chemical	chemical	NN
cord-324395-v5uiuhih	183	26	modifications	modification	NNS
cord-324395-v5uiuhih	183	27	in	in	IN
cord-324395-v5uiuhih	183	28	the	the	DT
cord-324395-v5uiuhih	183	29	protein	protein	NN
cord-324395-v5uiuhih	183	30	data	datum	NNS
cord-324395-v5uiuhih	183	31	Bank	Bank	NNP
cord-324395-v5uiuhih	183	32	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	183	33	-	-	HYPH
cord-324395-v5uiuhih	183	34	GUI	GUI	NNP
cord-324395-v5uiuhih	183	35	glycan	glycan	NN
cord-324395-v5uiuhih	183	36	modeler	modeler	NN
cord-324395-v5uiuhih	183	37	for	for	IN
cord-324395-v5uiuhih	183	38	modeling	modeling	NN
cord-324395-v5uiuhih	183	39	and	and	CC
cord-324395-v5uiuhih	183	40	simulation	simulation	NN
cord-324395-v5uiuhih	183	41	of	of	IN
cord-324395-v5uiuhih	183	42	carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	183	43	and	and	CC
cord-324395-v5uiuhih	183	44	glycoconjugates	glycoconjugate	NNS
cord-324395-v5uiuhih	183	45	DB	DB	NNP
cord-324395-v5uiuhih	183	46	:	:	:
cord-324395-v5uiuhih	183	47	an	an	DT
cord-324395-v5uiuhih	183	48	annotated	annotated	JJ
cord-324395-v5uiuhih	183	49	data	data	NN
cord-324395-v5uiuhih	183	50	collection	collection	NN
cord-324395-v5uiuhih	183	51	linking	link	VBG
cord-324395-v5uiuhih	183	52	glycomics	glycomic	NNS
cord-324395-v5uiuhih	183	53	and	and	CC
cord-324395-v5uiuhih	183	54	proteomics	proteomic	NNS
cord-324395-v5uiuhih	183	55	data	datum	NNS
cord-324395-v5uiuhih	183	56	GLYCAM06	GLYCAM06	NNP
cord-324395-v5uiuhih	183	57	:	:	:
cord-324395-v5uiuhih	184	1	A	a	DT
cord-324395-v5uiuhih	184	2	generalizable	generalizable	JJ
cord-324395-v5uiuhih	184	3	biomolecular	biomolecular	JJ
cord-324395-v5uiuhih	184	4	force	force	NN
cord-324395-v5uiuhih	184	5	field	field	NN
cord-324395-v5uiuhih	184	6	.	.	.
cord-324395-v5uiuhih	185	1	Carbohydrates	carbohydrate	NNS
cord-324395-v5uiuhih	185	2	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	185	3	additive	additive	NN
cord-324395-v5uiuhih	185	4	all	all	DT
cord-324395-v5uiuhih	185	5	-	-	HYPH
cord-324395-v5uiuhih	185	6	atom	atom	NN
cord-324395-v5uiuhih	185	7	force	force	NN
cord-324395-v5uiuhih	185	8	field	field	NN
cord-324395-v5uiuhih	185	9	for	for	IN
cord-324395-v5uiuhih	185	10	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	185	11	derivatives	derivative	NNS
cord-324395-v5uiuhih	185	12	and	and	CC
cord-324395-v5uiuhih	185	13	its	-PRON-	PRP$
cord-324395-v5uiuhih	185	14	utility	utility	NN
cord-324395-v5uiuhih	185	15	in	in	IN
cord-324395-v5uiuhih	185	16	polysaccharide	polysaccharide	NN
cord-324395-v5uiuhih	185	17	and	and	CC
cord-324395-v5uiuhih	185	18	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	185	19	-	-	HYPH
cord-324395-v5uiuhih	185	20	protein	protein	NN
cord-324395-v5uiuhih	186	1	modeling	model	VBG
cord-324395-v5uiuhih	186	2	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	186	3	-	-	HYPH
cord-324395-v5uiuhih	186	4	GUI	GUI	NNP
cord-324395-v5uiuhih	186	5	:	:	:
cord-324395-v5uiuhih	186	6	a	a	DT
cord-324395-v5uiuhih	186	7	web	web	NN
cord-324395-v5uiuhih	186	8	-	-	HYPH
cord-324395-v5uiuhih	186	9	based	base	VBN
cord-324395-v5uiuhih	186	10	graphical	graphical	JJ
cord-324395-v5uiuhih	186	11	user	user	NN
cord-324395-v5uiuhih	186	12	interface	interface	NN
cord-324395-v5uiuhih	186	13	for	for	IN
cord-324395-v5uiuhih	186	14	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	186	15	CHARMM	CHARMM	NNP
cord-324395-v5uiuhih	186	16	-	-	HYPH
cord-324395-v5uiuhih	186	17	GUI	GUI	NNP
cord-324395-v5uiuhih	186	18	membrane	membrane	NN
cord-324395-v5uiuhih	186	19	builder	builder	NN
cord-324395-v5uiuhih	186	20	for	for	IN
cord-324395-v5uiuhih	186	21	complex	complex	JJ
cord-324395-v5uiuhih	186	22	biological	biological	JJ
cord-324395-v5uiuhih	186	23	membrane	membrane	NN
cord-324395-v5uiuhih	186	24	simulations	simulation	NNS
cord-324395-v5uiuhih	186	25	with	with	IN
cord-324395-v5uiuhih	186	26	glycolipids	glycolipid	NNS
cord-324395-v5uiuhih	186	27	and	and	CC
cord-324395-v5uiuhih	186	28	lipoglycans	lipoglycan	NNS
cord-324395-v5uiuhih	186	29	Prody	Prody	NNP
cord-324395-v5uiuhih	186	30	:	:	:
cord-324395-v5uiuhih	186	31	protein	protein	NN
cord-324395-v5uiuhih	186	32	dynamics	dynamic	NNS
cord-324395-v5uiuhih	186	33	inferred	infer	VBN
cord-324395-v5uiuhih	186	34	from	from	IN
cord-324395-v5uiuhih	186	35	theory	theory	NN
cord-324395-v5uiuhih	186	36	and	and	CC
cord-324395-v5uiuhih	186	37	experiments	experiment	NNS
cord-324395-v5uiuhih	186	38	Exploring	explore	VBG
cord-324395-v5uiuhih	186	39	network	network	NN
cord-324395-v5uiuhih	186	40	structure	structure	NN
cord-324395-v5uiuhih	186	41	,	,	,
cord-324395-v5uiuhih	186	42	dynamics	dynamic	NNS
cord-324395-v5uiuhih	186	43	,	,	,
cord-324395-v5uiuhih	186	44	and	and	CC
cord-324395-v5uiuhih	186	45	function	function	VB
cord-324395-v5uiuhih	186	46	using	use	VBG
cord-324395-v5uiuhih	186	47	NetworkX	NetworkX	NNP
cord-324395-v5uiuhih	186	48	Matplotlib	Matplotlib	NNP
cord-324395-v5uiuhih	186	49	:	:	:
cord-324395-v5uiuhih	186	50	a	a	DT
cord-324395-v5uiuhih	186	51	2D	2D	NNP
cord-324395-v5uiuhih	186	52	graphics	graphic	NNS
cord-324395-v5uiuhih	186	53	environment	environment	NN
cord-324395-v5uiuhih	187	1	A	a	DT
cord-324395-v5uiuhih	187	2	bioinformatics	bioinformatics	NN
cord-324395-v5uiuhih	187	3	view	view	NN
cord-324395-v5uiuhih	187	4	of	of	IN
cord-324395-v5uiuhih	187	5	glycan	glycan	NN
cord-324395-v5uiuhih	187	6	-	-	HYPH
cord-324395-v5uiuhih	187	7	virus	virus	NN
cord-324395-v5uiuhih	187	8	interactions	interaction	NNS
cord-324395-v5uiuhih	187	9	Comprehensive	Comprehensive	NNP
cord-324395-v5uiuhih	187	10	Glycoscience	Glycoscience	NNP
cord-324395-v5uiuhih	187	11	(	(	-LRB-
cord-324395-v5uiuhih	187	12	From	from	IN
cord-324395-v5uiuhih	187	13	Chemistry	Chemistry	NNP
cord-324395-v5uiuhih	187	14	to	to	IN
cord-324395-v5uiuhih	187	15	Systems	Systems	NNP
cord-324395-v5uiuhih	187	16	Biology	Biology	NNP
cord-324395-v5uiuhih	187	17	)	)	-RRB-
cord-324395-v5uiuhih	188	1	VMD	VMD	NNP
cord-324395-v5uiuhih	188	2	:	:	:
cord-324395-v5uiuhih	188	3	visual	visual	JJ
cord-324395-v5uiuhih	188	4	molecular	molecular	JJ
cord-324395-v5uiuhih	188	5	dynamics	dynamic	NNS
cord-324395-v5uiuhih	188	6	Scalable	scalable	JJ
cord-324395-v5uiuhih	188	7	molecular	molecular	JJ
cord-324395-v5uiuhih	188	8	dynamics	dynamic	NNS
cord-324395-v5uiuhih	188	9	with	with	IN
cord-324395-v5uiuhih	188	10	NAMD	NAMD	NNP
cord-324395-v5uiuhih	188	11	pdb	pdb	NN
cord-324395-v5uiuhih	188	12	-	-	HYPH
cord-324395-v5uiuhih	188	13	care	care	NN
cord-324395-v5uiuhih	188	14	(	(	-LRB-
cord-324395-v5uiuhih	188	15	PDB	PDB	NNP
cord-324395-v5uiuhih	188	16	CArbohydrate	CArbohydrate	NNP
cord-324395-v5uiuhih	188	17	REsidue	REsidue	NNP
cord-324395-v5uiuhih	188	18	check	check	NN
cord-324395-v5uiuhih	188	19	)	)	-RRB-
cord-324395-v5uiuhih	188	20	:	:	:
cord-324395-v5uiuhih	189	1	A	a	DT
cord-324395-v5uiuhih	189	2	program	program	NN
cord-324395-v5uiuhih	189	3	to	to	TO
cord-324395-v5uiuhih	189	4	support	support	VB
cord-324395-v5uiuhih	189	5	annotation	annotation	NN
cord-324395-v5uiuhih	189	6	of	of	IN
cord-324395-v5uiuhih	189	7	complex	complex	JJ
cord-324395-v5uiuhih	189	8	carbohydrate	carbohydrate	NN
cord-324395-v5uiuhih	189	9	structures	structure	NNS
cord-324395-v5uiuhih	189	10	in	in	IN
cord-324395-v5uiuhih	189	11	PDB	PDB	NNP
cord-324395-v5uiuhih	189	12	files	file	VBZ
cord-324395-v5uiuhih	189	13	Trimeric	Trimeric	NNP
cord-324395-v5uiuhih	189	14	HIV-1-Env	HIV-1-Env	NNP
cord-324395-v5uiuhih	189	15	structures	structure	NNS
cord-324395-v5uiuhih	189	16	define	define	VBP
cord-324395-v5uiuhih	189	17	glycan	glycan	NN
cord-324395-v5uiuhih	189	18	shields	shield	NNS
cord-324395-v5uiuhih	189	19	from	from	IN
cord-324395-v5uiuhih	189	20	clades	clade	NNS
cord-324395-v5uiuhih	189	21	a	a	DT
cord-324395-v5uiuhih	189	22	,	,	,
cord-324395-v5uiuhih	189	23	B	b	NN
cord-324395-v5uiuhih	189	24	,	,	,
cord-324395-v5uiuhih	189	25	and	and	CC
cord-324395-v5uiuhih	189	26	G	G	NNP
cord-324395-v5uiuhih	189	27	Insights	Insights	NNPS
cord-324395-v5uiuhih	189	28	from	from	IN
cord-324395-v5uiuhih	189	29	NMR	NMR	NNP
cord-324395-v5uiuhih	189	30	spectroscopy	spectroscopy	NN
cord-324395-v5uiuhih	189	31	into	into	IN
cord-324395-v5uiuhih	189	32	the	the	DT
cord-324395-v5uiuhih	189	33	conformational	conformational	JJ
cord-324395-v5uiuhih	189	34	properties	property	NNS
cord-324395-v5uiuhih	189	35	of	of	IN
cord-324395-v5uiuhih	189	36	Man-9	Man-9	NNP
cord-324395-v5uiuhih	189	37	and	and	CC
cord-324395-v5uiuhih	189	38	its	-PRON-	PRP$
cord-324395-v5uiuhih	189	39	recognition	recognition	NN
cord-324395-v5uiuhih	189	40	by	by	IN
cord-324395-v5uiuhih	189	41	two	two	CD
cord-324395-v5uiuhih	189	42	HIV	HIV	NNP
cord-324395-v5uiuhih	189	43	binding	bind	VBG
cord-324395-v5uiuhih	189	44	proteins	protein	NNS
cord-324395-v5uiuhih	189	45	Microsecond	microsecond	VBP
cord-324395-v5uiuhih	189	46	dynamics	dynamic	NNS
cord-324395-v5uiuhih	189	47	and	and	CC
cord-324395-v5uiuhih	189	48	network	network	NN
cord-324395-v5uiuhih	189	49	analysis	analysis	NN
cord-324395-v5uiuhih	189	50	of	of	IN
cord-324395-v5uiuhih	189	51	the	the	DT
cord-324395-v5uiuhih	189	52	HIV-1	HIV-1	NNP
cord-324395-v5uiuhih	189	53	SOSIP	SOSIP	NNP
cord-324395-v5uiuhih	189	54	Env	Env	NNP
cord-324395-v5uiuhih	189	55	trimer	trimer	NN
cord-324395-v5uiuhih	189	56	reveal	reveal	VBP
cord-324395-v5uiuhih	189	57	collective	collective	JJ
cord-324395-v5uiuhih	189	58	behavior	behavior	NN
cord-324395-v5uiuhih	189	59	and	and	CC
cord-324395-v5uiuhih	189	60	conserved	conserve	VBN
cord-324395-v5uiuhih	189	61	microdomains	microdomain	NNS
cord-324395-v5uiuhih	189	62	of	of	IN
cord-324395-v5uiuhih	189	63	the	the	DT
cord-324395-v5uiuhih	189	64	glycan	glycan	NN
cord-324395-v5uiuhih	189	65	shield	shield	NN
cord-324395-v5uiuhih	190	1	Publisher	publisher	NN
cord-324395-v5uiuhih	190	2	's	's	POS
cord-324395-v5uiuhih	190	3	Note	Note	NNP
cord-324395-v5uiuhih	190	4	Springer	Springer	NNP
cord-324395-v5uiuhih	190	5	Nature	Nature	NNP
cord-324395-v5uiuhih	190	6	remains	remain	VBZ
cord-324395-v5uiuhih	190	7	neutral	neutral	JJ
cord-324395-v5uiuhih	190	8	with	with	IN
cord-324395-v5uiuhih	190	9	regard	regard	NN
cord-324395-v5uiuhih	190	10	to	to	IN
cord-324395-v5uiuhih	190	11	jurisdictional	jurisdictional	JJ
cord-324395-v5uiuhih	190	12	claims	claim	NNS
cord-324395-v5uiuhih	190	13	in	in	IN
cord-324395-v5uiuhih	190	14	published	publish	VBN
cord-324395-v5uiuhih	190	15	maps	map	NNS
cord-324395-v5uiuhih	190	16	and	and	CC
cord-324395-v5uiuhih	190	17	institutional	institutional	JJ
cord-324395-v5uiuhih	190	18	affiliations	affiliation	NNS
cord-324395-v5uiuhih	191	1	We	-PRON-	PRP
cord-324395-v5uiuhih	191	2	would	would	MD
cord-324395-v5uiuhih	191	3	like	like	VB
cord-324395-v5uiuhih	191	4	to	to	TO
cord-324395-v5uiuhih	191	5	thank	thank	VB
cord-324395-v5uiuhih	191	6	Dr.	Dr.	NNP
cord-324395-v5uiuhih	191	7	James	James	NNP
cord-324395-v5uiuhih	191	8	E.	E.	NNP
cord-324395-v5uiuhih	191	9	Crowe	Crowe	NNP
cord-324395-v5uiuhih	191	10	for	for	IN
cord-324395-v5uiuhih	191	11	his	-PRON-	PRP$
cord-324395-v5uiuhih	191	12	support	support	NN
cord-324395-v5uiuhih	191	13	and	and	CC
cord-324395-v5uiuhih	191	14	comments	comment	NNS
cord-324395-v5uiuhih	191	15	on	on	IN
cord-324395-v5uiuhih	191	16	the	the	DT
cord-324395-v5uiuhih	191	17	manuscript	manuscript	NN
cord-324395-v5uiuhih	191	18	,	,	,
cord-324395-v5uiuhih	191	19	and	and	CC
cord-324395-v5uiuhih	191	20	Dr.	Dr.	NNP
cord-324395-v5uiuhih	191	21	Peter	Peter	NNP
cord-324395-v5uiuhih	191	22	D.	D.	NNP
cord-324395-v5uiuhih	191	23	Kwong	Kwong	NNP
cord-324395-v5uiuhih	191	24	and	and	CC
cord-324395-v5uiuhih	191	25	Dr.	Dr.	NNP
cord-324395-v5uiuhih	191	26	Gwo	Gwo	NNP
cord-324395-v5uiuhih	191	27	-	-	HYPH
cord-324395-v5uiuhih	191	28	yu	yu	NNP
cord-324395-v5uiuhih	191	29	Chuang	Chuang	NNP
cord-324395-v5uiuhih	191	30	for	for	IN
cord-324395-v5uiuhih	191	31	their	-PRON-	PRP$
cord-324395-v5uiuhih	191	32	constructive	constructive	JJ
cord-324395-v5uiuhih	191	33	feedback	feedback	NN
cord-324395-v5uiuhih	191	34	.	.	.
cord-324395-v5uiuhih	192	1	Authors	author	NNS
cord-324395-v5uiuhih	192	2	'	'	POS
cord-324395-v5uiuhih	192	3	contributions	contribution	NNS
cord-324395-v5uiuhih	192	4	TL	TL	NNP
cord-324395-v5uiuhih	192	5	and	and	CC
cord-324395-v5uiuhih	192	6	CS	CS	NNP
cord-324395-v5uiuhih	192	7	conceived	conceive	VBN
cord-324395-v5uiuhih	192	8	of	of	IN
cord-324395-v5uiuhih	192	9	the	the	DT
cord-324395-v5uiuhih	192	10	idea	idea	NN
cord-324395-v5uiuhih	192	11	;	;	:
cord-324395-v5uiuhih	192	12	TL	TL	NNP
cord-324395-v5uiuhih	192	13	designed	design	VBD
cord-324395-v5uiuhih	192	14	and	and	CC
cord-324395-v5uiuhih	192	15	wrote	write	VBD
cord-324395-v5uiuhih	192	16	the	the	DT
cord-324395-v5uiuhih	192	17	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	192	18	package	package	NN
cord-324395-v5uiuhih	192	19	;	;	:
cord-324395-v5uiuhih	192	20	TL	TL	NNP
cord-324395-v5uiuhih	192	21	and	and	CC
cord-324395-v5uiuhih	192	22	CS	CS	NNP
cord-324395-v5uiuhih	192	23	wrote	write	VBD
cord-324395-v5uiuhih	192	24	the	the	DT
cord-324395-v5uiuhih	192	25	paper	paper	NN
cord-324395-v5uiuhih	192	26	.	.	.
cord-324395-v5uiuhih	193	1	All	all	DT
cord-324395-v5uiuhih	193	2	authors	author	NNS
cord-324395-v5uiuhih	193	3	read	read	VBP
cord-324395-v5uiuhih	193	4	and	and	CC
cord-324395-v5uiuhih	193	5	approved	approve	VBD
cord-324395-v5uiuhih	193	6	the	the	DT
cord-324395-v5uiuhih	193	7	final	final	JJ
cord-324395-v5uiuhih	193	8	manuscript	manuscript	NN
cord-324395-v5uiuhih	193	9	.	.	.
cord-324395-v5uiuhih	194	1	This	this	DT
cord-324395-v5uiuhih	194	2	work	work	NN
cord-324395-v5uiuhih	194	3	was	be	VBD
cord-324395-v5uiuhih	194	4	supported	support	VBN
cord-324395-v5uiuhih	194	5	by	by	IN
cord-324395-v5uiuhih	194	6	a	a	DT
cord-324395-v5uiuhih	194	7	grant	grant	NN
cord-324395-v5uiuhih	194	8	from	from	IN
cord-324395-v5uiuhih	194	9	the	the	DT
cord-324395-v5uiuhih	194	10	Human	Human	NNP
cord-324395-v5uiuhih	194	11	Vaccines	Vaccines	NNPS
cord-324395-v5uiuhih	194	12	Project	Project	NNP
cord-324395-v5uiuhih	194	13	.	.	.
cord-324395-v5uiuhih	195	1	TL	TL	NNP
cord-324395-v5uiuhih	195	2	would	would	MD
cord-324395-v5uiuhih	195	3	like	like	VB
cord-324395-v5uiuhih	195	4	to	to	TO
cord-324395-v5uiuhih	195	5	acknowledge	acknowledge	VB
cord-324395-v5uiuhih	195	6	the	the	DT
cord-324395-v5uiuhih	195	7	support	support	NN
cord-324395-v5uiuhih	195	8	of	of	IN
cord-324395-v5uiuhih	195	9	the	the	DT
cord-324395-v5uiuhih	195	10	Swiss	Swiss	NNP
cord-324395-v5uiuhih	195	11	National	National	NNP
cord-324395-v5uiuhih	195	12	Science	Science	NNP
cord-324395-v5uiuhih	195	13	Foundation	Foundation	NNP
cord-324395-v5uiuhih	195	14	(	(	-LRB-
cord-324395-v5uiuhih	195	15	grant	grant	NNP
cord-324395-v5uiuhih	195	16	P3P3PA_174356	P3P3PA_174356	NNP
cord-324395-v5uiuhih	195	17	)	)	-RRB-
cord-324395-v5uiuhih	195	18	.	.	.
cord-324395-v5uiuhih	196	1	The	the	DT
cord-324395-v5uiuhih	196	2	funding	funding	NN
cord-324395-v5uiuhih	196	3	bodies	body	NNS
cord-324395-v5uiuhih	196	4	Human	Human	NNP
cord-324395-v5uiuhih	196	5	Vaccines	Vaccines	NNPS
cord-324395-v5uiuhih	196	6	Project	Project	NNP
cord-324395-v5uiuhih	196	7	and	and	CC
cord-324395-v5uiuhih	196	8	Swiss	Swiss	NNP
cord-324395-v5uiuhih	196	9	National	National	NNP
cord-324395-v5uiuhih	196	10	Science	Science	NNP
cord-324395-v5uiuhih	196	11	Foundation	Foundation	NNP
cord-324395-v5uiuhih	196	12	had	have	VBD
cord-324395-v5uiuhih	196	13	no	no	DT
cord-324395-v5uiuhih	196	14	role	role	NN
cord-324395-v5uiuhih	196	15	in	in	IN
cord-324395-v5uiuhih	196	16	the	the	DT
cord-324395-v5uiuhih	196	17	design	design	NN
cord-324395-v5uiuhih	196	18	of	of	IN
cord-324395-v5uiuhih	196	19	the	the	DT
cord-324395-v5uiuhih	196	20	study	study	NN
cord-324395-v5uiuhih	196	21	;	;	:
cord-324395-v5uiuhih	196	22	collection	collection	NN
cord-324395-v5uiuhih	196	23	,	,	,
cord-324395-v5uiuhih	196	24	analysis	analysis	NN
cord-324395-v5uiuhih	196	25	,	,	,
cord-324395-v5uiuhih	196	26	and	and	CC
cord-324395-v5uiuhih	196	27	interpretation	interpretation	NN
cord-324395-v5uiuhih	196	28	of	of	IN
cord-324395-v5uiuhih	196	29	data	datum	NNS
cord-324395-v5uiuhih	196	30	;	;	,
cord-324395-v5uiuhih	196	31	or	or	CC
cord-324395-v5uiuhih	196	32	in	in	IN
cord-324395-v5uiuhih	196	33	writing	write	VBG
cord-324395-v5uiuhih	196	34	the	the	DT
cord-324395-v5uiuhih	196	35	manuscript	manuscript	NN
cord-324395-v5uiuhih	196	36	.	.	.
cord-324395-v5uiuhih	197	1	Glycosylator	Glycosylator	NNP
cord-324395-v5uiuhih	197	2	is	be	VBZ
cord-324395-v5uiuhih	197	3	available	available	JJ
cord-324395-v5uiuhih	197	4	from	from	IN
cord-324395-v5uiuhih	197	5	the	the	DT
cord-324395-v5uiuhih	197	6	following	follow	VBG
cord-324395-v5uiuhih	197	7	Github	Github	NNP
cord-324395-v5uiuhih	197	8	repository	repository	NN
cord-324395-v5uiuhih	197	9	:	:	:
cord-324395-v5uiuhih	198	1	https://github	https://github	NNP
cord-324395-v5uiuhih	198	2	.	.	.
cord-324395-v5uiuhih	199	1	com	com	NN
cord-324395-v5uiuhih	200	1	/tlemmin	/tlemmin	.
cord-324395-v5uiuhih	200	2	/	/	SYM
cord-324395-v5uiuhih	200	3	glycosylator	glycosylator	NNP
cord-324395-v5uiuhih	200	4	Ethics	Ethics	NNP
cord-324395-v5uiuhih	200	5	approval	approval	NN
cord-324395-v5uiuhih	200	6	and	and	CC
cord-324395-v5uiuhih	200	7	consent	consent	NN
cord-324395-v5uiuhih	200	8	to	to	TO
cord-324395-v5uiuhih	200	9	participate	participate	VB
cord-324395-v5uiuhih	200	10	Not	not	RB
cord-324395-v5uiuhih	200	11	applicable	applicable	JJ
cord-324395-v5uiuhih	200	12	.	.	.
cord-324395-v5uiuhih	201	1	Not	not	RB
cord-324395-v5uiuhih	201	2	applicable	applicable	JJ
cord-324395-v5uiuhih	201	3	.	.	.
cord-324395-v5uiuhih	202	1	The	the	DT
cord-324395-v5uiuhih	202	2	authors	author	NNS
cord-324395-v5uiuhih	202	3	declare	declare	VBP
cord-324395-v5uiuhih	202	4	that	that	IN
cord-324395-v5uiuhih	202	5	they	-PRON-	PRP
cord-324395-v5uiuhih	202	6	have	have	VBP
cord-324395-v5uiuhih	202	7	no	no	DT
cord-324395-v5uiuhih	202	8	competing	compete	VBG
cord-324395-v5uiuhih	202	9	interests	interest	NNS
cord-324395-v5uiuhih	202	10	.	.	.
cord-324395-v5uiuhih	202	11	 	 	_SP