id	sid	tid	token	lemma	pos
cord-289926-y1rjgbui	1	1	key	key	JJ
cord-289926-y1rjgbui	1	2	:	:	:
cord-289926-y1rjgbui	1	3	cord-289926-y1rjgbui	cord-289926-y1rjgbui	JJ
cord-289926-y1rjgbui	1	4	authors	author	NNS
cord-289926-y1rjgbui	1	5	:	:	:
cord-289926-y1rjgbui	1	6	Veretnik	Veretnik	NNP
cord-289926-y1rjgbui	1	7	,	,	,
cord-289926-y1rjgbui	1	8	S.	S.	NNP
cord-289926-y1rjgbui	1	9	;	;	:
cord-289926-y1rjgbui	1	10	Gribskov	Gribskov	NNP
cord-289926-y1rjgbui	1	11	,	,	,
cord-289926-y1rjgbui	1	12	M.	M.	NNP
cord-289926-y1rjgbui	1	13	title	title	NN
cord-289926-y1rjgbui	1	14	:	:	:
cord-289926-y1rjgbui	1	15	RNA	rna	NN
cord-289926-y1rjgbui	1	16	binding	binding	NN
cord-289926-y1rjgbui	1	17	domain	domain	NN
cord-289926-y1rjgbui	1	18	of	of	IN
cord-289926-y1rjgbui	1	19	HDV	HDV	NNP
cord-289926-y1rjgbui	1	20	antigen	antigen	NN
cord-289926-y1rjgbui	1	21	is	be	VBZ
cord-289926-y1rjgbui	1	22	homologous	homologous	JJ
cord-289926-y1rjgbui	1	23	to	to	IN
cord-289926-y1rjgbui	1	24	the	the	DT
cord-289926-y1rjgbui	1	25	HMG	HMG	NNP
cord-289926-y1rjgbui	1	26	box	box	NN
cord-289926-y1rjgbui	1	27	of	of	IN
cord-289926-y1rjgbui	1	28	SRY	SRY	NNP
cord-289926-y1rjgbui	1	29	date	date	NN
cord-289926-y1rjgbui	2	1	:	:	:
cord-289926-y1rjgbui	2	2	2014	2014	CD
cord-289926-y1rjgbui	2	3	-	-	HYPH
cord-289926-y1rjgbui	2	4	05	05	CD
cord-289926-y1rjgbui	2	5	-	-	SYM
cord-289926-y1rjgbui	2	6	18	18	CD
cord-289926-y1rjgbui	2	7	journal	journal	NN
cord-289926-y1rjgbui	2	8	:	:	:
cord-289926-y1rjgbui	3	1	Arch	Arch	NNP
cord-289926-y1rjgbui	3	2	Virol	Virol	NNP
cord-289926-y1rjgbui	4	1	DOI	DOI	NNP
cord-289926-y1rjgbui	4	2	:	:	:
cord-289926-y1rjgbui	4	3	10.1007	10.1007	CD
cord-289926-y1rjgbui	4	4	/	/	SYM
cord-289926-y1rjgbui	4	5	s007050050575	s007050050575	NNP
cord-289926-y1rjgbui	4	6	sha	sha	NNP
cord-289926-y1rjgbui	4	7	:	:	:
cord-289926-y1rjgbui	4	8	469eb25bd5ef12981ba86af96534a884fcc8a524	469eb25bd5ef12981ba86af96534a884fcc8a524	CD
cord-289926-y1rjgbui	4	9	doc_id	doc_id	CD
cord-289926-y1rjgbui	4	10	:	:	:
cord-289926-y1rjgbui	4	11	289926	289926	CD
cord-289926-y1rjgbui	4	12	cord_uid	cord_uid	NNS
cord-289926-y1rjgbui	4	13	:	:	:
cord-289926-y1rjgbui	5	1	y1rjgbui	y1rjgbui	NNP
cord-289926-y1rjgbui	6	1	The	the	DT
cord-289926-y1rjgbui	6	2	delta	delta	NN
cord-289926-y1rjgbui	6	3	antigen	antigen	NN
cord-289926-y1rjgbui	6	4	of	of	IN
cord-289926-y1rjgbui	6	5	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	6	6	delta	delta	NNP
cord-289926-y1rjgbui	6	7	virus	virus	NN
cord-289926-y1rjgbui	6	8	exhibits	exhibit	VBZ
cord-289926-y1rjgbui	6	9	sequence	sequence	NN
cord-289926-y1rjgbui	6	10	specific	specific	JJ
cord-289926-y1rjgbui	6	11	binding	binding	NN
cord-289926-y1rjgbui	6	12	to	to	IN
cord-289926-y1rjgbui	6	13	its	-PRON-	PRP$
cord-289926-y1rjgbui	6	14	own	own	JJ
cord-289926-y1rjgbui	6	15	RNA	RNA	NNP
cord-289926-y1rjgbui	6	16	and	and	CC
cord-289926-y1rjgbui	6	17	is	be	VBZ
cord-289926-y1rjgbui	6	18	essential	essential	JJ
cord-289926-y1rjgbui	6	19	for	for	IN
cord-289926-y1rjgbui	6	20	viral	viral	JJ
cord-289926-y1rjgbui	6	21	replication	replication	NN
cord-289926-y1rjgbui	6	22	.	.	.
cord-289926-y1rjgbui	7	1	Using	use	VBG
cord-289926-y1rjgbui	7	2	statistical	statistical	JJ
cord-289926-y1rjgbui	7	3	methods	method	NNS
cord-289926-y1rjgbui	7	4	we	-PRON-	PRP
cord-289926-y1rjgbui	7	5	have	have	VBP
cord-289926-y1rjgbui	7	6	detected	detect	VBN
cord-289926-y1rjgbui	7	7	significant	significant	JJ
cord-289926-y1rjgbui	7	8	similarity	similarity	NN
cord-289926-y1rjgbui	7	9	between	between	IN
cord-289926-y1rjgbui	7	10	the	the	DT
cord-289926-y1rjgbui	7	11	RNA	RNA	NNP
cord-289926-y1rjgbui	7	12	-	-	HYPH
cord-289926-y1rjgbui	7	13	binding	bind	VBG
cord-289926-y1rjgbui	7	14	domain	domain	NN
cord-289926-y1rjgbui	7	15	of	of	IN
cord-289926-y1rjgbui	7	16	the	the	DT
cord-289926-y1rjgbui	7	17	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	7	18	delta	delta	NNP
cord-289926-y1rjgbui	7	19	antigen	antigen	NNP
cord-289926-y1rjgbui	7	20	and	and	CC
cord-289926-y1rjgbui	7	21	the	the	DT
cord-289926-y1rjgbui	7	22	HMG	HMG	NNP
cord-289926-y1rjgbui	7	23	box	box	NN
cord-289926-y1rjgbui	7	24	of	of	IN
cord-289926-y1rjgbui	7	25	SRY	SRY	NNP
cord-289926-y1rjgbui	7	26	.	.	.
cord-289926-y1rjgbui	8	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	8	2	analysis	analysis	NN
cord-289926-y1rjgbui	8	3	suggests	suggest	VBZ
cord-289926-y1rjgbui	8	4	that	that	IN
cord-289926-y1rjgbui	8	5	the	the	DT
cord-289926-y1rjgbui	8	6	RNA	RNA	NNP
cord-289926-y1rjgbui	8	7	-	-	HYPH
cord-289926-y1rjgbui	8	8	binding	bind	VBG
cord-289926-y1rjgbui	8	9	domain	domain	NN
cord-289926-y1rjgbui	8	10	of	of	IN
cord-289926-y1rjgbui	8	11	HDV	HDV	NNP
cord-289926-y1rjgbui	8	12	antigen	antigen	NN
cord-289926-y1rjgbui	8	13	evolved	evolve	VBD
cord-289926-y1rjgbui	8	14	from	from	IN
cord-289926-y1rjgbui	8	15	the	the	DT
cord-289926-y1rjgbui	8	16	DNA	dna	NN
cord-289926-y1rjgbui	8	17	-	-	HYPH
cord-289926-y1rjgbui	8	18	binding	bind	VBG
cord-289926-y1rjgbui	8	19	domain	domain	NN
cord-289926-y1rjgbui	8	20	of	of	IN
cord-289926-y1rjgbui	8	21	the	the	DT
cord-289926-y1rjgbui	8	22	HMG	HMG	NNP
cord-289926-y1rjgbui	8	23	box	box	NN
cord-289926-y1rjgbui	8	24	.	.	.
cord-289926-y1rjgbui	9	1	SRY	sry	UH
cord-289926-y1rjgbui	9	2	,	,	,
cord-289926-y1rjgbui	9	3	or	or	CC
cord-289926-y1rjgbui	9	4	a	a	DT
cord-289926-y1rjgbui	9	5	related	related	JJ
cord-289926-y1rjgbui	9	6	protein	protein	NN
cord-289926-y1rjgbui	9	7	,	,	,
cord-289926-y1rjgbui	9	8	is	be	VBZ
cord-289926-y1rjgbui	9	9	a	a	DT
cord-289926-y1rjgbui	9	10	probable	probable	JJ
cord-289926-y1rjgbui	9	11	cellular	cellular	JJ
cord-289926-y1rjgbui	9	12	cognate	cognate	NN
cord-289926-y1rjgbui	9	13	of	of	IN
cord-289926-y1rjgbui	9	14	HDV	HDV	NNP
cord-289926-y1rjgbui	9	15	.	.	.
cord-289926-y1rjgbui	10	1	Hepatitis	Hepatitis	NNP
cord-289926-y1rjgbui	10	2	delta	delta	NN
cord-289926-y1rjgbui	10	3	virus	virus	NN
cord-289926-y1rjgbui	10	4	(	(	-LRB-
cord-289926-y1rjgbui	10	5	HDV	HDV	NNP
cord-289926-y1rjgbui	10	6	)	)	-RRB-
cord-289926-y1rjgbui	10	7	,	,	,
cord-289926-y1rjgbui	10	8	the	the	DT
cord-289926-y1rjgbui	10	9	satellite	satellite	NN
cord-289926-y1rjgbui	10	10	of	of	IN
cord-289926-y1rjgbui	10	11	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	10	12	B	B	NNP
cord-289926-y1rjgbui	10	13	virus	virus	NN
cord-289926-y1rjgbui	10	14	(	(	-LRB-
cord-289926-y1rjgbui	10	15	HBV	HBV	NNP
cord-289926-y1rjgbui	10	16	)	)	-RRB-
cord-289926-y1rjgbui	10	17	is	be	VBZ
cord-289926-y1rjgbui	10	18	unique	unique	JJ
cord-289926-y1rjgbui	10	19	among	among	IN
cord-289926-y1rjgbui	10	20	animal	animal	NN
cord-289926-y1rjgbui	10	21	viruses	virus	NNS
cord-289926-y1rjgbui	10	22	in	in	IN
cord-289926-y1rjgbui	10	23	that	that	IN
cord-289926-y1rjgbui	10	24	it	-PRON-	PRP
cord-289926-y1rjgbui	10	25	contains	contain	VBZ
cord-289926-y1rjgbui	10	26	a	a	DT
cord-289926-y1rjgbui	10	27	circular	circular	JJ
cord-289926-y1rjgbui	10	28	,	,	,
cord-289926-y1rjgbui	10	29	viroid	viroid	JJ
cord-289926-y1rjgbui	10	30	-	-	HYPH
cord-289926-y1rjgbui	10	31	like	like	JJ
cord-289926-y1rjgbui	10	32	RNA	RNA	NNP
cord-289926-y1rjgbui	10	33	genome	genome	NN
cord-289926-y1rjgbui	10	34	.	.	.
cord-289926-y1rjgbui	11	1	While	while	IN
cord-289926-y1rjgbui	11	2	it	-PRON-	PRP
cord-289926-y1rjgbui	11	3	is	be	VBZ
cord-289926-y1rjgbui	11	4	fully	fully	RB
cord-289926-y1rjgbui	11	5	dependent	dependent	JJ
cord-289926-y1rjgbui	11	6	on	on	IN
cord-289926-y1rjgbui	11	7	the	the	DT
cord-289926-y1rjgbui	11	8	helper	helper	NN
cord-289926-y1rjgbui	11	9	virus	virus	NN
cord-289926-y1rjgbui	11	10	for	for	IN
cord-289926-y1rjgbui	11	11	its	-PRON-	PRP$
cord-289926-y1rjgbui	11	12	packaging	packaging	NN
cord-289926-y1rjgbui	11	13	,	,	,
cord-289926-y1rjgbui	11	14	HDV	HDV	NNP
cord-289926-y1rjgbui	11	15	has	have	VBZ
cord-289926-y1rjgbui	11	16	no	no	DT
cord-289926-y1rjgbui	11	17	significant	significant	JJ
cord-289926-y1rjgbui	11	18	sequence	sequence	NN
cord-289926-y1rjgbui	11	19	similarity	similarity	NN
cord-289926-y1rjgbui	11	20	to	to	IN
cord-289926-y1rjgbui	11	21	HBV	HBV	NNP
cord-289926-y1rjgbui	11	22	;	;	:
cord-289926-y1rjgbui	11	23	its	-PRON-	PRP$
cord-289926-y1rjgbui	11	24	replication	replication	NN
cord-289926-y1rjgbui	11	25	is	be	VBZ
cord-289926-y1rjgbui	11	26	independent	independent	JJ
cord-289926-y1rjgbui	11	27	of	of	IN
cord-289926-y1rjgbui	11	28	HBV	HBV	NNP
cord-289926-y1rjgbui	11	29	and	and	CC
cord-289926-y1rjgbui	11	30	its	-PRON-	PRP$
cord-289926-y1rjgbui	11	31	geographic	geographic	JJ
cord-289926-y1rjgbui	11	32	prevalence	prevalence	NN
cord-289926-y1rjgbui	11	33	is	be	VBZ
cord-289926-y1rjgbui	11	34	different	different	JJ
cord-289926-y1rjgbui	11	35	[	[	-LRB-
cord-289926-y1rjgbui	11	36	30	30	CD
cord-289926-y1rjgbui	11	37	]	]	-RRB-
cord-289926-y1rjgbui	11	38	.	.	.
cord-289926-y1rjgbui	12	1	HDV	HDV	NNP
cord-289926-y1rjgbui	12	2	is	be	VBZ
cord-289926-y1rjgbui	12	3	a	a	DT
cord-289926-y1rjgbui	12	4	single	single	JJ
cord-289926-y1rjgbui	12	5	stranded	strand	VBN
cord-289926-y1rjgbui	12	6	RNA	RNA	NNP
cord-289926-y1rjgbui	12	7	virus	virus	NN
cord-289926-y1rjgbui	12	8	.	.	.
cord-289926-y1rjgbui	13	1	It	-PRON-	PRP
cord-289926-y1rjgbui	13	2	replicates	replicate	VBZ
cord-289926-y1rjgbui	13	3	through	through	IN
cord-289926-y1rjgbui	13	4	a	a	DT
cord-289926-y1rjgbui	13	5	double	double	JJ
cord-289926-y1rjgbui	13	6	rolling	rolling	JJ
cord-289926-y1rjgbui	13	7	-	-	HYPH
cord-289926-y1rjgbui	13	8	circle	circle	NN
cord-289926-y1rjgbui	13	9	mechanism	mechanism	NN
cord-289926-y1rjgbui	13	10	,	,	,
cord-289926-y1rjgbui	13	11	probably	probably	RB
cord-289926-y1rjgbui	13	12	using	use	VBG
cord-289926-y1rjgbui	13	13	RNA	RNA	NNP
cord-289926-y1rjgbui	13	14	polymerase	polymerase	NN
cord-289926-y1rjgbui	13	15	II	II	NNP
cord-289926-y1rjgbui	13	16	and	and	CC
cord-289926-y1rjgbui	13	17	cellular	cellular	JJ
cord-289926-y1rjgbui	13	18	transcriptional	transcriptional	JJ
cord-289926-y1rjgbui	13	19	machinery	machinery	NN
cord-289926-y1rjgbui	13	20	[	[	-LRB-
cord-289926-y1rjgbui	13	21	8	8	CD
cord-289926-y1rjgbui	13	22	,	,	,
cord-289926-y1rjgbui	13	23	22	22	CD
cord-289926-y1rjgbui	13	24	]	]	-RRB-
cord-289926-y1rjgbui	13	25	.	.	.
cord-289926-y1rjgbui	14	1	Two	two	CD
cord-289926-y1rjgbui	14	2	detectable	detectable	JJ
cord-289926-y1rjgbui	14	3	HDV	HDV	NNP
cord-289926-y1rjgbui	14	4	antigens	antigen	NNS
cord-289926-y1rjgbui	14	5	(	(	-LRB-
cord-289926-y1rjgbui	14	6	HDAg	HDAg	NNP
cord-289926-y1rjgbui	14	7	)	)	-RRB-
cord-289926-y1rjgbui	14	8	are	be	VBP
cord-289926-y1rjgbui	14	9	encoded	encode	VBN
cord-289926-y1rjgbui	14	10	by	by	IN
cord-289926-y1rjgbui	14	11	a	a	DT
cord-289926-y1rjgbui	14	12	single	single	JJ
cord-289926-y1rjgbui	14	13	open	open	JJ
cord-289926-y1rjgbui	14	14	reading	reading	NN
cord-289926-y1rjgbui	14	15	frame	frame	NN
cord-289926-y1rjgbui	14	16	on	on	IN
cord-289926-y1rjgbui	14	17	the	the	DT
cord-289926-y1rjgbui	14	18	antigenomic	antigenomic	JJ
cord-289926-y1rjgbui	14	19	strand	strand	NN
cord-289926-y1rjgbui	14	20	.	.	.
cord-289926-y1rjgbui	15	1	The	the	DT
cord-289926-y1rjgbui	15	2	large	large	JJ
cord-289926-y1rjgbui	15	3	antigen	antigen	NN
cord-289926-y1rjgbui	15	4	(	(	-LRB-
cord-289926-y1rjgbui	15	5	L	l	NN
cord-289926-y1rjgbui	15	6	-	-	HYPH
cord-289926-y1rjgbui	15	7	HDAg	HDAg	NNP
cord-289926-y1rjgbui	15	8	)	)	-RRB-
cord-289926-y1rjgbui	15	9	is	be	VBZ
cord-289926-y1rjgbui	15	10	a	a	DT
cord-289926-y1rjgbui	15	11	result	result	NN
cord-289926-y1rjgbui	15	12	of	of	IN
cord-289926-y1rjgbui	15	13	RNA	RNA	NNP
cord-289926-y1rjgbui	15	14	editing	editing	NN
cord-289926-y1rjgbui	15	15	which	which	WDT
cord-289926-y1rjgbui	15	16	extends	extend	VBZ
cord-289926-y1rjgbui	15	17	the	the	DT
cord-289926-y1rjgbui	15	18	protein	protein	NN
cord-289926-y1rjgbui	15	19	coding	code	VBG
cord-289926-y1rjgbui	15	20	sequence	sequence	NN
cord-289926-y1rjgbui	15	21	of	of	IN
cord-289926-y1rjgbui	15	22	the	the	DT
cord-289926-y1rjgbui	15	23	small	small	JJ
cord-289926-y1rjgbui	15	24	antigen	antigen	NN
cord-289926-y1rjgbui	15	25	(	(	-LRB-
cord-289926-y1rjgbui	15	26	S	s	NN
cord-289926-y1rjgbui	15	27	-	-	HYPH
cord-289926-y1rjgbui	15	28	HDAg	HDAg	NNP
cord-289926-y1rjgbui	15	29	)	)	-RRB-
cord-289926-y1rjgbui	15	30	by	by	IN
cord-289926-y1rjgbui	15	31	19	19	CD
cord-289926-y1rjgbui	15	32	residues	residue	NNS
cord-289926-y1rjgbui	15	33	;	;	:
cord-289926-y1rjgbui	15	34	L	l	NN
cord-289926-y1rjgbui	15	35	-	-	HYPH
cord-289926-y1rjgbui	15	36	HDAg	HDAg	NNP
cord-289926-y1rjgbui	15	37	appears	appear	VBZ
cord-289926-y1rjgbui	15	38	later	later	RB
cord-289926-y1rjgbui	15	39	in	in	IN
cord-289926-y1rjgbui	15	40	infection	infection	NN
cord-289926-y1rjgbui	15	41	,	,	,
cord-289926-y1rjgbui	15	42	suppresses	suppress	VBZ
cord-289926-y1rjgbui	15	43	replication	replication	NN
cord-289926-y1rjgbui	15	44	and	and	CC
cord-289926-y1rjgbui	15	45	initiates	initiate	VBZ
cord-289926-y1rjgbui	15	46	viral	viral	JJ
cord-289926-y1rjgbui	15	47	packaging	packaging	NN
cord-289926-y1rjgbui	15	48	[	[	-LRB-
cord-289926-y1rjgbui	15	49	7	7	CD
cord-289926-y1rjgbui	15	50	,	,	,
cord-289926-y1rjgbui	15	51	25	25	CD
cord-289926-y1rjgbui	15	52	]	]	-RRB-
cord-289926-y1rjgbui	15	53	.	.	.
cord-289926-y1rjgbui	16	1	The	the	DT
cord-289926-y1rjgbui	16	2	small	small	JJ
cord-289926-y1rjgbui	16	3	antigen	antigen	NN
cord-289926-y1rjgbui	16	4	(	(	-LRB-
cord-289926-y1rjgbui	16	5	S	s	NN
cord-289926-y1rjgbui	16	6	-	-	HYPH
cord-289926-y1rjgbui	16	7	HDAg	HDAg	NNP
cord-289926-y1rjgbui	16	8	)	)	-RRB-
cord-289926-y1rjgbui	16	9	is	be	VBZ
cord-289926-y1rjgbui	16	10	essential	essential	JJ
cord-289926-y1rjgbui	16	11	for	for	IN
cord-289926-y1rjgbui	16	12	viral	viral	JJ
cord-289926-y1rjgbui	16	13	replication	replication	NN
cord-289926-y1rjgbui	16	14	and	and	CC
cord-289926-y1rjgbui	16	15	is	be	VBZ
cord-289926-y1rjgbui	16	16	proposed	propose	VBN
cord-289926-y1rjgbui	16	17	to	to	TO
cord-289926-y1rjgbui	16	18	facilitate	facilitate	VB
cord-289926-y1rjgbui	16	19	the	the	DT
cord-289926-y1rjgbui	16	20	interactions	interaction	NNS
cord-289926-y1rjgbui	16	21	between	between	IN
cord-289926-y1rjgbui	16	22	the	the	DT
cord-289926-y1rjgbui	16	23	cellular	cellular	JJ
cord-289926-y1rjgbui	16	24	transcriptional	transcriptional	JJ
cord-289926-y1rjgbui	16	25	machinery	machinery	NN
cord-289926-y1rjgbui	16	26	and	and	CC
cord-289926-y1rjgbui	16	27	the	the	DT
cord-289926-y1rjgbui	16	28	viral	viral	JJ
cord-289926-y1rjgbui	16	29	template	template	NN
cord-289926-y1rjgbui	16	30	.	.	.
cord-289926-y1rjgbui	17	1	The	the	DT
cord-289926-y1rjgbui	17	2	central	central	JJ
cord-289926-y1rjgbui	17	3	domain	domain	NN
cord-289926-y1rjgbui	17	4	of	of	IN
cord-289926-y1rjgbui	17	5	S	s	NN
cord-289926-y1rjgbui	17	6	-	-	HYPH
cord-289926-y1rjgbui	17	7	HDAg	HDAg	NNS
cord-289926-y1rjgbui	17	8	,	,	,
cord-289926-y1rjgbui	17	9	which	which	WDT
cord-289926-y1rjgbui	17	10	is	be	VBZ
cord-289926-y1rjgbui	17	11	involved	involve	VBN
cord-289926-y1rjgbui	17	12	in	in	IN
cord-289926-y1rjgbui	17	13	binding	bind	VBG
cord-289926-y1rjgbui	17	14	to	to	IN
cord-289926-y1rjgbui	17	15	the	the	DT
cord-289926-y1rjgbui	17	16	viral	viral	JJ
cord-289926-y1rjgbui	17	17	genome	genome	NN
cord-289926-y1rjgbui	17	18	,	,	,
cord-289926-y1rjgbui	17	19	contains	contain	VBZ
cord-289926-y1rjgbui	17	20	two	two	CD
cord-289926-y1rjgbui	17	21	arginine	arginine	NN
cord-289926-y1rjgbui	17	22	-	-	HYPH
cord-289926-y1rjgbui	17	23	rich	rich	JJ
cord-289926-y1rjgbui	17	24	motifs	motif	NNS
cord-289926-y1rjgbui	17	25	(	(	-LRB-
cord-289926-y1rjgbui	17	26	ARMs	arm	NNS
cord-289926-y1rjgbui	17	27	)	)	-RRB-
cord-289926-y1rjgbui	17	28	bracketing	bracket	VBG
cord-289926-y1rjgbui	17	29	a	a	DT
cord-289926-y1rjgbui	17	30	leucine	leucine	NN
cord-289926-y1rjgbui	17	31	zipper	zipper	NN
cord-289926-y1rjgbui	17	32	.	.	.
cord-289926-y1rjgbui	18	1	Mutational	mutational	JJ
cord-289926-y1rjgbui	18	2	analysis	analysis	NN
cord-289926-y1rjgbui	18	3	indicates	indicate	VBZ
cord-289926-y1rjgbui	18	4	that	that	IN
cord-289926-y1rjgbui	18	5	both	both	CC
cord-289926-y1rjgbui	18	6	the	the	DT
cord-289926-y1rjgbui	18	7	ARMs	arm	NNS
cord-289926-y1rjgbui	18	8	and	and	CC
cord-289926-y1rjgbui	18	9	the	the	DT
cord-289926-y1rjgbui	18	10	leucine	leucine	NN
cord-289926-y1rjgbui	18	11	zipper	zipper	NN
cord-289926-y1rjgbui	18	12	region	region	NN
cord-289926-y1rjgbui	18	13	are	be	VBP
cord-289926-y1rjgbui	18	14	essential	essential	JJ
cord-289926-y1rjgbui	18	15	for	for	IN
cord-289926-y1rjgbui	18	16	binding	bind	VBG
cord-289926-y1rjgbui	18	17	to	to	IN
cord-289926-y1rjgbui	18	18	the	the	DT
cord-289926-y1rjgbui	18	19	HDV	HDV	NNP
cord-289926-y1rjgbui	18	20	genome	genome	NN
cord-289926-y1rjgbui	18	21	[	[	-LRB-
cord-289926-y1rjgbui	18	22	32	32	CD
cord-289926-y1rjgbui	18	23	]	]	-RRB-
cord-289926-y1rjgbui	18	24	.	.	.
cord-289926-y1rjgbui	19	1	Using	use	VBG
cord-289926-y1rjgbui	19	2	sequence	sequence	NN
cord-289926-y1rjgbui	19	3	analysis	analysis	NN
cord-289926-y1rjgbui	19	4	methods	method	NNS
cord-289926-y1rjgbui	19	5	we	-PRON-	PRP
cord-289926-y1rjgbui	19	6	have	have	VBP
cord-289926-y1rjgbui	19	7	discovered	discover	VBN
cord-289926-y1rjgbui	19	8	significant	significant	JJ
cord-289926-y1rjgbui	19	9	sequence	sequence	NN
cord-289926-y1rjgbui	19	10	similarity	similarity	NN
cord-289926-y1rjgbui	19	11	between	between	IN
cord-289926-y1rjgbui	19	12	this	this	DT
cord-289926-y1rjgbui	19	13	central	central	JJ
cord-289926-y1rjgbui	19	14	domain	domain	NN
cord-289926-y1rjgbui	19	15	of	of	IN
cord-289926-y1rjgbui	19	16	HDAg	hdag	NN
cord-289926-y1rjgbui	19	17	and	and	CC
cord-289926-y1rjgbui	19	18	the	the	DT
cord-289926-y1rjgbui	19	19	HMG	HMG	NNP
cord-289926-y1rjgbui	19	20	(	(	-LRB-
cord-289926-y1rjgbui	19	21	High	High	NNP
cord-289926-y1rjgbui	19	22	Mobility	Mobility	NNP
cord-289926-y1rjgbui	19	23	Group	Group	NNP
cord-289926-y1rjgbui	19	24	)	)	-RRB-
cord-289926-y1rjgbui	19	25	box	box	NN
cord-289926-y1rjgbui	19	26	of	of	IN
cord-289926-y1rjgbui	19	27	the	the	DT
cord-289926-y1rjgbui	19	28	SRY	SRY	NNP
cord-289926-y1rjgbui	19	29	gene	gene	NN
cord-289926-y1rjgbui	19	30	[	[	-LRB-
cord-289926-y1rjgbui	19	31	40	40	CD
cord-289926-y1rjgbui	19	32	]	]	-RRB-
cord-289926-y1rjgbui	19	33	,	,	,
cord-289926-y1rjgbui	19	34	whose	whose	WP$
cord-289926-y1rjgbui	19	35	product	product	NN
cord-289926-y1rjgbui	19	36	binds	bind	VBZ
cord-289926-y1rjgbui	19	37	to	to	IN
cord-289926-y1rjgbui	19	38	DNA	dna	NN
cord-289926-y1rjgbui	19	39	and	and	CC
cord-289926-y1rjgbui	19	40	is	be	VBZ
cord-289926-y1rjgbui	19	41	essential	essential	JJ
cord-289926-y1rjgbui	19	42	for	for	IN
cord-289926-y1rjgbui	19	43	sex	sex	NN
cord-289926-y1rjgbui	19	44	determination	determination	NN
cord-289926-y1rjgbui	19	45	.	.	.
cord-289926-y1rjgbui	20	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	20	2	results	result	NNS
cord-289926-y1rjgbui	20	3	indicate	indicate	VBP
cord-289926-y1rjgbui	20	4	a	a	DT
cord-289926-y1rjgbui	20	5	possible	possible	JJ
cord-289926-y1rjgbui	20	6	evolution	evolution	NN
cord-289926-y1rjgbui	20	7	of	of	IN
cord-289926-y1rjgbui	20	8	this	this	DT
cord-289926-y1rjgbui	20	9	widely	widely	RB
cord-289926-y1rjgbui	20	10	used	use	VBN
cord-289926-y1rjgbui	20	11	DNA	dna	NN
cord-289926-y1rjgbui	20	12	-	-	HYPH
cord-289926-y1rjgbui	20	13	binding	bind	VBG
cord-289926-y1rjgbui	20	14	domain	domain	NN
cord-289926-y1rjgbui	20	15	into	into	IN
cord-289926-y1rjgbui	20	16	the	the	DT
cord-289926-y1rjgbui	20	17	RNA	RNA	NNP
cord-289926-y1rjgbui	20	18	-	-	HYPH
cord-289926-y1rjgbui	20	19	binding	bind	VBG
cord-289926-y1rjgbui	20	20	domain	domain	NN
cord-289926-y1rjgbui	20	21	of	of	IN
cord-289926-y1rjgbui	20	22	HDAg	HDAg	NNS
cord-289926-y1rjgbui	20	23	.	.	.
cord-289926-y1rjgbui	21	1	The	the	DT
cord-289926-y1rjgbui	21	2	organization	organization	NN
cord-289926-y1rjgbui	21	3	of	of	IN
cord-289926-y1rjgbui	21	4	the	the	DT
cord-289926-y1rjgbui	21	5	HDV	HDV	NNP
cord-289926-y1rjgbui	21	6	genome	genome	NN
cord-289926-y1rjgbui	21	7	suggests	suggest	VBZ
cord-289926-y1rjgbui	21	8	two	two	CD
cord-289926-y1rjgbui	21	9	distinct	distinct	JJ
cord-289926-y1rjgbui	21	10	sources	source	NNS
cord-289926-y1rjgbui	21	11	for	for	IN
cord-289926-y1rjgbui	21	12	its	-PRON-	PRP$
cord-289926-y1rjgbui	21	13	genomic	genomic	JJ
cord-289926-y1rjgbui	21	14	RNA	RNA	NNP
cord-289926-y1rjgbui	21	15	:	:	:
cord-289926-y1rjgbui	21	16	25	25	CD
cord-289926-y1rjgbui	21	17	%	%	NN
cord-289926-y1rjgbui	21	18	of	of	IN
cord-289926-y1rjgbui	21	19	the	the	DT
cord-289926-y1rjgbui	21	20	genome	genome	NN
cord-289926-y1rjgbui	21	21	resembles	resemble	VBZ
cord-289926-y1rjgbui	21	22	a	a	DT
cord-289926-y1rjgbui	21	23	plant	plant	NN
cord-289926-y1rjgbui	21	24	viroid	viroid	NNP
cord-289926-y1rjgbui	21	25	RNA	RNA	NNP
cord-289926-y1rjgbui	21	26	(	(	-LRB-
cord-289926-y1rjgbui	21	27	the	the	DT
cord-289926-y1rjgbui	21	28	smallest	smallest	RBS
cord-289926-y1rjgbui	21	29	known	know	VBN
cord-289926-y1rjgbui	21	30	self	self	NN
cord-289926-y1rjgbui	21	31	-	-	HYPH
cord-289926-y1rjgbui	21	32	replicating	replicate	VBG
cord-289926-y1rjgbui	21	33	genome	genome	NN
cord-289926-y1rjgbui	21	34	)	)	-RRB-
cord-289926-y1rjgbui	21	35	,	,	,
cord-289926-y1rjgbui	21	36	while	while	IN
cord-289926-y1rjgbui	21	37	the	the	DT
cord-289926-y1rjgbui	21	38	remaining	remain	VBG
cord-289926-y1rjgbui	21	39	three	three	CD
cord-289926-y1rjgbui	21	40	-	-	HYPH
cord-289926-y1rjgbui	21	41	quarters	quarter	NNS
cord-289926-y1rjgbui	21	42	of	of	IN
cord-289926-y1rjgbui	21	43	the	the	DT
cord-289926-y1rjgbui	21	44	genome	genome	NN
cord-289926-y1rjgbui	21	45	is	be	VBZ
cord-289926-y1rjgbui	21	46	more	more	JJR
cord-289926-y1rjgbui	21	47	like	like	IN
cord-289926-y1rjgbui	21	48	a	a	DT
cord-289926-y1rjgbui	21	49	cellular	cellular	JJ
cord-289926-y1rjgbui	21	50	RNA	rna	NN
cord-289926-y1rjgbui	21	51	.	.	.
cord-289926-y1rjgbui	22	1	Half	half	NN
cord-289926-y1rjgbui	22	2	of	of	IN
cord-289926-y1rjgbui	22	3	this	this	DT
cord-289926-y1rjgbui	22	4	cellular	cellular	JJ
cord-289926-y1rjgbui	22	5	domain	domain	NN
cord-289926-y1rjgbui	22	6	codes	code	NNS
cord-289926-y1rjgbui	22	7	for	for	IN
cord-289926-y1rjgbui	22	8	HDAg	HDAg	NNS
cord-289926-y1rjgbui	22	9	.	.	.
cord-289926-y1rjgbui	23	1	This	this	DT
cord-289926-y1rjgbui	23	2	unique	unique	JJ
cord-289926-y1rjgbui	23	3	combination	combination	NN
cord-289926-y1rjgbui	23	4	of	of	IN
cord-289926-y1rjgbui	23	5	domains	domain	NNS
cord-289926-y1rjgbui	23	6	within	within	IN
cord-289926-y1rjgbui	23	7	HDV	HDV	NNP
cord-289926-y1rjgbui	23	8	gave	give	VBD
cord-289926-y1rjgbui	23	9	rise	rise	NN
cord-289926-y1rjgbui	23	10	to	to	IN
cord-289926-y1rjgbui	23	11	the	the	DT
cord-289926-y1rjgbui	23	12	hypothesis	hypothesis	NN
cord-289926-y1rjgbui	23	13	that	that	IN
cord-289926-y1rjgbui	23	14	a	a	DT
cord-289926-y1rjgbui	23	15	small	small	JJ
cord-289926-y1rjgbui	23	16	viroid	viroid	NN
cord-289926-y1rjgbui	23	17	(	(	-LRB-
cord-289926-y1rjgbui	23	18	300	300	CD
cord-289926-y1rjgbui	23	19	-	-	SYM
cord-289926-y1rjgbui	23	20	400	400	CD
cord-289926-y1rjgbui	23	21	bp	bp	NNP
cord-289926-y1rjgbui	23	22	long	long	NNP
cord-289926-y1rjgbui	23	23	)	)	-RRB-
cord-289926-y1rjgbui	23	24	captured	capture	VBD
cord-289926-y1rjgbui	23	25	a	a	DT
cord-289926-y1rjgbui	23	26	cellular	cellular	JJ
cord-289926-y1rjgbui	23	27	RNA	RNA	NNP
cord-289926-y1rjgbui	23	28	,	,	,
cord-289926-y1rjgbui	23	29	resulting	result	VBG
cord-289926-y1rjgbui	23	30	in	in	IN
cord-289926-y1rjgbui	23	31	a	a	DT
cord-289926-y1rjgbui	23	32	larger	large	JJR
cord-289926-y1rjgbui	23	33	virus	virus	NN
cord-289926-y1rjgbui	23	34	that	that	WDT
cord-289926-y1rjgbui	23	35	retained	retain	VBD
cord-289926-y1rjgbui	23	36	the	the	DT
cord-289926-y1rjgbui	23	37	ribozyme	ribozyme	NNS
cord-289926-y1rjgbui	23	38	activities	activity	NNS
cord-289926-y1rjgbui	23	39	of	of	IN
cord-289926-y1rjgbui	23	40	the	the	DT
cord-289926-y1rjgbui	23	41	viroid	viroid	JJ
cord-289926-y1rjgbui	23	42	(	(	-LRB-
cord-289926-y1rjgbui	23	43	such	such	JJ
cord-289926-y1rjgbui	23	44	as	as	IN
cord-289926-y1rjgbui	23	45	self	self	NN
cord-289926-y1rjgbui	23	46	-	-	HYPH
cord-289926-y1rjgbui	23	47	cleavage	cleavage	NN
cord-289926-y1rjgbui	23	48	and	and	CC
cord-289926-y1rjgbui	23	49	self	self	NN
cord-289926-y1rjgbui	23	50	-	-	HYPH
cord-289926-y1rjgbui	23	51	ligation	ligation	NN
cord-289926-y1rjgbui	23	52	)	)	-RRB-
cord-289926-y1rjgbui	23	53	[	[	-LRB-
cord-289926-y1rjgbui	23	54	3	3	CD
cord-289926-y1rjgbui	23	55	,	,	,
cord-289926-y1rjgbui	23	56	39	39	CD
cord-289926-y1rjgbui	23	57	]	]	-RRB-
cord-289926-y1rjgbui	23	58	.	.	.
cord-289926-y1rjgbui	24	1	The	the	DT
cord-289926-y1rjgbui	24	2	sequence	sequence	NN
cord-289926-y1rjgbui	24	3	similarity	similarity	NN
cord-289926-y1rjgbui	24	4	between	between	IN
cord-289926-y1rjgbui	24	5	the	the	DT
cord-289926-y1rjgbui	24	6	central	central	JJ
cord-289926-y1rjgbui	24	7	domain	domain	NN
cord-289926-y1rjgbui	24	8	of	of	IN
cord-289926-y1rjgbui	24	9	HDAg	hdag	NN
cord-289926-y1rjgbui	24	10	and	and	CC
cord-289926-y1rjgbui	24	11	the	the	DT
cord-289926-y1rjgbui	24	12	HMG	HMG	NNP
cord-289926-y1rjgbui	24	13	(	(	-LRB-
cord-289926-y1rjgbui	24	14	High	High	NNP
cord-289926-y1rjgbui	24	15	Mobility	Mobility	NNP
cord-289926-y1rjgbui	24	16	Group	Group	NNP
cord-289926-y1rjgbui	24	17	)	)	-RRB-
cord-289926-y1rjgbui	24	18	box	box	NN
cord-289926-y1rjgbui	24	19	of	of	IN
cord-289926-y1rjgbui	24	20	the	the	DT
cord-289926-y1rjgbui	24	21	SRY	SRY	NNP
cord-289926-y1rjgbui	24	22	gene	gene	NN
cord-289926-y1rjgbui	24	23	suggests	suggest	VBZ
cord-289926-y1rjgbui	24	24	that	that	IN
cord-289926-y1rjgbui	24	25	SRY	SRY	NNP
cord-289926-y1rjgbui	24	26	may	may	MD
cord-289926-y1rjgbui	24	27	be	be	VB
cord-289926-y1rjgbui	24	28	a	a	DT
cord-289926-y1rjgbui	24	29	cellular	cellular	JJ
cord-289926-y1rjgbui	24	30	cognate	cognate	NN
cord-289926-y1rjgbui	24	31	of	of	IN
cord-289926-y1rjgbui	24	32	HDAg	HDAg	NNS
cord-289926-y1rjgbui	24	33	.	.	.
cord-289926-y1rjgbui	25	1	Another	another	DT
cord-289926-y1rjgbui	25	2	candidate	candidate	NN
cord-289926-y1rjgbui	25	3	for	for	IN
cord-289926-y1rjgbui	25	4	the	the	DT
cord-289926-y1rjgbui	25	5	'	'	``
cord-289926-y1rjgbui	25	6	captured	capture	VBN
cord-289926-y1rjgbui	25	7	'	'	''
cord-289926-y1rjgbui	25	8	cellular	cellular	JJ
cord-289926-y1rjgbui	25	9	RNA	RNA	NNP
cord-289926-y1rjgbui	25	10	was	be	VBD
cord-289926-y1rjgbui	25	11	recently	recently	RB
cord-289926-y1rjgbui	25	12	proposed	propose	VBN
cord-289926-y1rjgbui	25	13	:	:	:
cord-289926-y1rjgbui	25	14	a	a	DT
cord-289926-y1rjgbui	25	15	202	202	CD
cord-289926-y1rjgbui	25	16	residue	residue	NN
cord-289926-y1rjgbui	25	17	cellular	cellular	JJ
cord-289926-y1rjgbui	25	18	protein	protein	NN
cord-289926-y1rjgbui	25	19	referred	refer	VBD
cord-289926-y1rjgbui	25	20	to	to	IN
cord-289926-y1rjgbui	25	21	as	as	IN
cord-289926-y1rjgbui	25	22	DIPA	DIPA	NNP
cord-289926-y1rjgbui	25	23	(	(	-LRB-
cord-289926-y1rjgbui	25	24	delta	delta	NNP
cord-289926-y1rjgbui	25	25	interacting	interact	VBG
cord-289926-y1rjgbui	25	26	protein	protein	NN
cord-289926-y1rjgbui	25	27	A	A	NNP
cord-289926-y1rjgbui	25	28	)	)	-RRB-
cord-289926-y1rjgbui	25	29	was	be	VBD
cord-289926-y1rjgbui	25	30	identified	identify	VBN
cord-289926-y1rjgbui	25	31	by	by	IN
cord-289926-y1rjgbui	25	32	co	co	NN
cord-289926-y1rjgbui	25	33	-	-	NN
cord-289926-y1rjgbui	25	34	immunoprecipitation	immunoprecipitation	JJ
cord-289926-y1rjgbui	25	35	with	with	IN
cord-289926-y1rjgbui	25	36	HDAg	HDAg	NNS
cord-289926-y1rjgbui	25	37	and	and	CC
cord-289926-y1rjgbui	25	38	by	by	IN
cord-289926-y1rjgbui	25	39	its	-PRON-	PRP$
cord-289926-y1rjgbui	25	40	in	in	IN
cord-289926-y1rjgbui	25	41	vivo	vivo	NN
cord-289926-y1rjgbui	25	42	ability	ability	NN
cord-289926-y1rjgbui	25	43	to	to	TO
cord-289926-y1rjgbui	25	44	inhibit	inhibit	VB
cord-289926-y1rjgbui	25	45	viral	viral	JJ
cord-289926-y1rjgbui	25	46	replication	replication	NN
cord-289926-y1rjgbui	25	47	[	[	-LRB-
cord-289926-y1rjgbui	25	48	5	5	CD
cord-289926-y1rjgbui	25	49	]	]	-RRB-
cord-289926-y1rjgbui	25	50	.	.	.
cord-289926-y1rjgbui	26	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	26	2	analysis	analysis	NN
cord-289926-y1rjgbui	26	3	shows	show	VBZ
cord-289926-y1rjgbui	26	4	that	that	IN
cord-289926-y1rjgbui	26	5	the	the	DT
cord-289926-y1rjgbui	26	6	level	level	NN
cord-289926-y1rjgbui	26	7	of	of	IN
cord-289926-y1rjgbui	26	8	similarity	similarity	NN
cord-289926-y1rjgbui	26	9	between	between	IN
cord-289926-y1rjgbui	26	10	HDAg	HDAg	NNS
cord-289926-y1rjgbui	26	11	and	and	CC
cord-289926-y1rjgbui	26	12	DIPA	DIPA	NNP
cord-289926-y1rjgbui	26	13	is	be	VBZ
cord-289926-y1rjgbui	26	14	within	within	IN
cord-289926-y1rjgbui	26	15	noise	noise	NN
cord-289926-y1rjgbui	26	16	level	level	NN
cord-289926-y1rjgbui	26	17	;	;	:
cord-289926-y1rjgbui	26	18	the	the	DT
cord-289926-y1rjgbui	26	19	similarity	similarity	NN
cord-289926-y1rjgbui	26	20	is	be	VBZ
cord-289926-y1rjgbui	26	21	likely	likely	JJ
cord-289926-y1rjgbui	26	22	to	to	TO
cord-289926-y1rjgbui	26	23	be	be	VB
cord-289926-y1rjgbui	26	24	due	due	JJ
cord-289926-y1rjgbui	26	25	to	to	IN
cord-289926-y1rjgbui	26	26	compositional	compositional	JJ
cord-289926-y1rjgbui	26	27	biases	bias	NNS
cord-289926-y1rjgbui	26	28	found	find	VBN
cord-289926-y1rjgbui	26	29	in	in	IN
cord-289926-y1rjgbui	26	30	motifs	motif	NNS
cord-289926-y1rjgbui	26	31	consisting	consist	VBG
cord-289926-y1rjgbui	26	32	of	of	IN
cord-289926-y1rjgbui	26	33	arginine	arginine	NN
cord-289926-y1rjgbui	26	34	-	-	HYPH
cord-289926-y1rjgbui	26	35	rich	rich	JJ
cord-289926-y1rjgbui	26	36	regions	region	NNS
cord-289926-y1rjgbui	26	37	and	and	CC
cord-289926-y1rjgbui	26	38	leucine	leucine	NN
cord-289926-y1rjgbui	26	39	zippers	zipper	NNS
cord-289926-y1rjgbui	26	40	(	(	-LRB-
cord-289926-y1rjgbui	26	41	bZIP	bzip	CD
cord-289926-y1rjgbui	26	42	motifs	motif	NNS
cord-289926-y1rjgbui	26	43	)	)	-RRB-
cord-289926-y1rjgbui	26	44	.	.	.
cord-289926-y1rjgbui	27	1	This	this	DT
cord-289926-y1rjgbui	27	2	paper	paper	NN
cord-289926-y1rjgbui	27	3	reports	report	VBZ
cord-289926-y1rjgbui	27	4	the	the	DT
cord-289926-y1rjgbui	27	5	results	result	NNS
cord-289926-y1rjgbui	27	6	of	of	IN
cord-289926-y1rjgbui	27	7	the	the	DT
cord-289926-y1rjgbui	27	8	in	in	IN
cord-289926-y1rjgbui	27	9	-	-	HYPH
cord-289926-y1rjgbui	27	10	depth	depth	NN
cord-289926-y1rjgbui	27	11	sequence	sequence	NN
cord-289926-y1rjgbui	27	12	analysis	analysis	NN
cord-289926-y1rjgbui	27	13	applied	apply	VBN
cord-289926-y1rjgbui	27	14	to	to	IN
cord-289926-y1rjgbui	27	15	the	the	DT
cord-289926-y1rjgbui	27	16	sequence	sequence	NN
cord-289926-y1rjgbui	27	17	of	of	IN
cord-289926-y1rjgbui	27	18	HDV	HDV	NNP
cord-289926-y1rjgbui	27	19	antigen	antigen	NN
cord-289926-y1rjgbui	27	20	in	in	IN
cord-289926-y1rjgbui	27	21	an	an	DT
cord-289926-y1rjgbui	27	22	attempt	attempt	NN
cord-289926-y1rjgbui	27	23	to	to	TO
cord-289926-y1rjgbui	27	24	further	further	RB
cord-289926-y1rjgbui	27	25	understand	understand	VB
cord-289926-y1rjgbui	27	26	the	the	DT
cord-289926-y1rjgbui	27	27	function	function	NN
cord-289926-y1rjgbui	27	28	and	and	CC
cord-289926-y1rjgbui	27	29	evolution	evolution	NN
cord-289926-y1rjgbui	27	30	of	of	IN
cord-289926-y1rjgbui	27	31	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	27	32	delta	delta	NNP
cord-289926-y1rjgbui	27	33	virus	virus	NN
cord-289926-y1rjgbui	27	34	-a	-a	:
cord-289926-y1rjgbui	27	35	unique	unique	JJ
cord-289926-y1rjgbui	27	36	entity	entity	NN
cord-289926-y1rjgbui	27	37	in	in	IN
cord-289926-y1rjgbui	27	38	the	the	DT
cord-289926-y1rjgbui	27	39	world	world	NN
cord-289926-y1rjgbui	27	40	of	of	IN
cord-289926-y1rjgbui	27	41	animal	animal	NN
cord-289926-y1rjgbui	27	42	RNA	RNA	NNP
cord-289926-y1rjgbui	27	43	viruses	virus	NNS
cord-289926-y1rjgbui	27	44	.	.	.
cord-289926-y1rjgbui	28	1	Sequence	sequence	NN
cord-289926-y1rjgbui	28	2	alignments	alignment	NNS
cord-289926-y1rjgbui	28	3	were	be	VBD
cord-289926-y1rjgbui	28	4	performed	perform	VBN
cord-289926-y1rjgbui	28	5	using	use	VBG
cord-289926-y1rjgbui	28	6	programs	program	NNS
cord-289926-y1rjgbui	28	7	from	from	IN
cord-289926-y1rjgbui	28	8	the	the	DT
cord-289926-y1rjgbui	28	9	GCG	GCG	NNP
cord-289926-y1rjgbui	28	10	Wisconsin	Wisconsin	NNP
cord-289926-y1rjgbui	28	11	Package	Package	NNP
cord-289926-y1rjgbui	28	12	version	version	NN
cord-289926-y1rjgbui	28	13	8	8	CD
cord-289926-y1rjgbui	28	14	.	.	.
cord-289926-y1rjgbui	29	1	1-UNIX	1-unix	LS
cord-289926-y1rjgbui	29	2	(	(	-LRB-
cord-289926-y1rjgbui	29	3	1995	1995	CD
cord-289926-y1rjgbui	29	4	)	)	-RRB-
cord-289926-y1rjgbui	29	5	.	.	.
cord-289926-y1rjgbui	30	1	For	for	IN
cord-289926-y1rjgbui	30	2	multiple	multiple	JJ
cord-289926-y1rjgbui	30	3	sequence	sequence	NN
cord-289926-y1rjgbui	30	4	alignments	alignment	NNS
cord-289926-y1rjgbui	30	5	,	,	,
cord-289926-y1rjgbui	30	6	the	the	DT
cord-289926-y1rjgbui	30	7	PILEUP	PILEUP	NNP
cord-289926-y1rjgbui	30	8	program	program	NN
cord-289926-y1rjgbui	30	9	(	(	-LRB-
cord-289926-y1rjgbui	30	10	based	base	VBN
cord-289926-y1rjgbui	30	11	on	on	IN
cord-289926-y1rjgbui	30	12	a	a	DT
cord-289926-y1rjgbui	30	13	simplified	simplified	JJ
cord-289926-y1rjgbui	30	14	version	version	NN
cord-289926-y1rjgbui	30	15	of	of	IN
cord-289926-y1rjgbui	30	16	the	the	DT
cord-289926-y1rjgbui	30	17	progressive	progressive	JJ
cord-289926-y1rjgbui	30	18	alignment	alignment	NN
cord-289926-y1rjgbui	30	19	method	method	NN
cord-289926-y1rjgbui	30	20	of	of	IN
cord-289926-y1rjgbui	30	21	Feng	Feng	NNP
cord-289926-y1rjgbui	30	22	and	and	CC
cord-289926-y1rjgbui	30	23	Doolittle	Doolittle	NNP
cord-289926-y1rjgbui	30	24	)	)	-RRB-
cord-289926-y1rjgbui	30	25	[	[	-LRB-
cord-289926-y1rjgbui	30	26	20	20	CD
cord-289926-y1rjgbui	30	27	]	]	-RRB-
cord-289926-y1rjgbui	30	28	under	under	IN
cord-289926-y1rjgbui	30	29	default	default	NN
cord-289926-y1rjgbui	30	30	conditions	condition	NNS
cord-289926-y1rjgbui	30	31	(	(	-LRB-
cord-289926-y1rjgbui	30	32	GapOpen=3.0	GapOpen=3.0	NNP
cord-289926-y1rjgbui	30	33	,	,	,
cord-289926-y1rjgbui	30	34	GapExtend=0.1	GapExtend=0.1	NNP
cord-289926-y1rjgbui	30	35	)	)	-RRB-
cord-289926-y1rjgbui	30	36	was	be	VBD
cord-289926-y1rjgbui	30	37	applied	apply	VBN
cord-289926-y1rjgbui	30	38	.	.	.
cord-289926-y1rjgbui	31	1	The	the	DT
cord-289926-y1rjgbui	31	2	GAP	gap	NN
cord-289926-y1rjgbui	31	3	program	program	NN
cord-289926-y1rjgbui	31	4	,	,	,
cord-289926-y1rjgbui	31	5	based	base	VBN
cord-289926-y1rjgbui	31	6	on	on	IN
cord-289926-y1rjgbui	31	7	the	the	DT
cord-289926-y1rjgbui	31	8	global	global	JJ
cord-289926-y1rjgbui	31	9	alignment	alignment	NN
cord-289926-y1rjgbui	31	10	algorithm	algorithm	NN
cord-289926-y1rjgbui	31	11	of	of	IN
cord-289926-y1rjgbui	31	12	Needleman	Needleman	NNP
cord-289926-y1rjgbui	31	13	and	and	CC
cord-289926-y1rjgbui	31	14	Wunsch	Wunsch	NNP
cord-289926-y1rjgbui	31	15	[	[	-LRB-
cord-289926-y1rjgbui	31	16	35	35	CD
cord-289926-y1rjgbui	31	17	]	]	-RRB-
cord-289926-y1rjgbui	31	18	was	be	VBD
cord-289926-y1rjgbui	31	19	used	use	VBN
cord-289926-y1rjgbui	31	20	for	for	IN
cord-289926-y1rjgbui	31	21	alignment	alignment	NN
cord-289926-y1rjgbui	31	22	of	of	IN
cord-289926-y1rjgbui	31	23	sequence	sequence	NN
cord-289926-y1rjgbui	31	24	pairs	pair	NNS
cord-289926-y1rjgbui	31	25	.	.	.
cord-289926-y1rjgbui	32	1	The	the	DT
cord-289926-y1rjgbui	32	2	best	well	RBS
cord-289926-y1rjgbui	32	3	matched	match	VBN
cord-289926-y1rjgbui	32	4	subsequences	subsequence	NNS
cord-289926-y1rjgbui	32	5	of	of	IN
cord-289926-y1rjgbui	32	6	SRY	SRY	NNP
cord-289926-y1rjgbui	32	7	,	,	,
cord-289926-y1rjgbui	32	8	HDAg	HDAg	NNPS
cord-289926-y1rjgbui	32	9	and	and	CC
cord-289926-y1rjgbui	32	10	DIPA	DIPA	NNP
cord-289926-y1rjgbui	32	11	were	be	VBD
cord-289926-y1rjgbui	32	12	detected	detect	VBN
cord-289926-y1rjgbui	32	13	by	by	IN
cord-289926-y1rjgbui	32	14	visual	visual	JJ
cord-289926-y1rjgbui	32	15	inspection	inspection	NN
cord-289926-y1rjgbui	32	16	;	;	:
cord-289926-y1rjgbui	32	17	alignments	alignment	NNS
cord-289926-y1rjgbui	32	18	of	of	IN
cord-289926-y1rjgbui	32	19	these	these	DT
cord-289926-y1rjgbui	32	20	regions	region	NNS
cord-289926-y1rjgbui	32	21	are	be	VBP
cord-289926-y1rjgbui	32	22	referred	refer	VBN
cord-289926-y1rjgbui	32	23	to	to	IN
cord-289926-y1rjgbui	32	24	as	as	IN
cord-289926-y1rjgbui	32	25	partial	partial	JJ
cord-289926-y1rjgbui	32	26	alignments	alignment	NNS
cord-289926-y1rjgbui	32	27	throughout	throughout	IN
cord-289926-y1rjgbui	32	28	this	this	DT
cord-289926-y1rjgbui	32	29	paper	paper	NN
cord-289926-y1rjgbui	32	30	.	.	.
cord-289926-y1rjgbui	33	1	The	the	DT
cord-289926-y1rjgbui	33	2	partial	partial	JJ
cord-289926-y1rjgbui	33	3	alignments	alignment	NNS
cord-289926-y1rjgbui	33	4	were	be	VBD
cord-289926-y1rjgbui	33	5	constructed	construct	VBN
cord-289926-y1rjgbui	33	6	by	by	IN
cord-289926-y1rjgbui	33	7	aligning	align	VBG
cord-289926-y1rjgbui	33	8	selected	select	VBN
cord-289926-y1rjgbui	33	9	subsequences	subsequence	NNS
cord-289926-y1rjgbui	33	10	using	use	VBG
cord-289926-y1rjgbui	33	11	the	the	DT
cord-289926-y1rjgbui	33	12	GAP	GAP	NNP
cord-289926-y1rjgbui	33	13	program	program	NN
cord-289926-y1rjgbui	33	14	.	.	.
cord-289926-y1rjgbui	34	1	The	the	DT
cord-289926-y1rjgbui	34	2	comparison	comparison	NN
cord-289926-y1rjgbui	34	3	matrix	matrix	NN
cord-289926-y1rjgbui	34	4	PAM150	PAM150	NNP
cord-289926-y1rjgbui	34	5	[	[	-LRB-
cord-289926-y1rjgbui	34	6	12	12	CD
cord-289926-y1rjgbui	34	7	]	]	-RRB-
cord-289926-y1rjgbui	34	8	was	be	VBD
cord-289926-y1rjgbui	34	9	used	use	VBN
cord-289926-y1rjgbui	34	10	for	for	IN
cord-289926-y1rjgbui	34	11	scoring	score	VBG
cord-289926-y1rjgbui	34	12	amino	amino	NN
cord-289926-y1rjgbui	34	13	acid	acid	NN
cord-289926-y1rjgbui	34	14	residue	residue	NN
cord-289926-y1rjgbui	34	15	similarities	similarity	NNS
cord-289926-y1rjgbui	34	16	.	.	.
cord-289926-y1rjgbui	35	1	Gap	gap	NN
cord-289926-y1rjgbui	35	2	opening	opening	NN
cord-289926-y1rjgbui	35	3	and	and	CC
cord-289926-y1rjgbui	35	4	gap	gap	NN
cord-289926-y1rjgbui	35	5	extension	extension	NN
cord-289926-y1rjgbui	35	6	penalties	penalty	NNS
cord-289926-y1rjgbui	35	7	were	be	VBD
cord-289926-y1rjgbui	35	8	varied	varied	JJ
cord-289926-y1rjgbui	35	9	and	and	CC
cord-289926-y1rjgbui	35	10	are	be	VBP
cord-289926-y1rjgbui	35	11	specified	specify	VBN
cord-289926-y1rjgbui	35	12	for	for	IN
cord-289926-y1rjgbui	35	13	each	each	DT
cord-289926-y1rjgbui	35	14	alignment	alignment	NN
cord-289926-y1rjgbui	35	15	.	.	.
cord-289926-y1rjgbui	36	1	Monte	Monte	NNP
cord-289926-y1rjgbui	36	2	Carlo	Carlo	NNP
cord-289926-y1rjgbui	36	3	evaluation	evaluation	NN
cord-289926-y1rjgbui	36	4	of	of	IN
cord-289926-y1rjgbui	36	5	sequence	sequence	NN
cord-289926-y1rjgbui	36	6	alignments	alignment	NNS
cord-289926-y1rjgbui	36	7	was	be	VBD
cord-289926-y1rjgbui	36	8	done	do	VBN
cord-289926-y1rjgbui	36	9	using	use	VBG
cord-289926-y1rjgbui	36	10	the	the	DT
cord-289926-y1rjgbui	36	11	GAP	GAP	NNP
cord-289926-y1rjgbui	36	12	program	program	NN
cord-289926-y1rjgbui	36	13	with	with	IN
cord-289926-y1rjgbui	36	14	the	the	DT
cord-289926-y1rjgbui	36	15	option	option	NN
cord-289926-y1rjgbui	36	16	'	'	``
cord-289926-y1rjgbui	36	17	-RANDOM=10000	-random=10000	UH
cord-289926-y1rjgbui	36	18	'	'	''
cord-289926-y1rjgbui	36	19	.	.	.
cord-289926-y1rjgbui	37	1	This	this	DT
cord-289926-y1rjgbui	37	2	evaluation	evaluation	NN
cord-289926-y1rjgbui	37	3	process	process	NN
cord-289926-y1rjgbui	37	4	consists	consist	VBZ
cord-289926-y1rjgbui	37	5	of	of	IN
cord-289926-y1rjgbui	37	6	randomizing	randomize	VBG
cord-289926-y1rjgbui	37	7	the	the	DT
cord-289926-y1rjgbui	37	8	first	first	JJ
cord-289926-y1rjgbui	37	9	sequence	sequence	NN
cord-289926-y1rjgbui	37	10	and	and	CC
cord-289926-y1rjgbui	37	11	realigning	realign	VBG
cord-289926-y1rjgbui	37	12	it	-PRON-	PRP
cord-289926-y1rjgbui	37	13	to	to	IN
cord-289926-y1rjgbui	37	14	the	the	DT
cord-289926-y1rjgbui	37	15	second	second	JJ
cord-289926-y1rjgbui	37	16	sequence	sequence	NN
cord-289926-y1rjgbui	37	17	10,000	10,000	CD
cord-289926-y1rjgbui	37	18	times	time	NNS
cord-289926-y1rjgbui	37	19	,	,	,
cord-289926-y1rjgbui	37	20	each	each	DT
cord-289926-y1rjgbui	37	21	time	time	NN
cord-289926-y1rjgbui	37	22	calculating	calculate	VBG
cord-289926-y1rjgbui	37	23	the	the	DT
cord-289926-y1rjgbui	37	24	alignment	alignment	NN
cord-289926-y1rjgbui	37	25	score	score	NN
cord-289926-y1rjgbui	37	26	.	.	.
cord-289926-y1rjgbui	38	1	The	the	DT
cord-289926-y1rjgbui	38	2	average	average	JJ
cord-289926-y1rjgbui	38	3	and	and	CC
cord-289926-y1rjgbui	38	4	standard	standard	JJ
cord-289926-y1rjgbui	38	5	deviation	deviation	NN
cord-289926-y1rjgbui	38	6	of	of	IN
cord-289926-y1rjgbui	38	7	10,000	10,000	CD
cord-289926-y1rjgbui	38	8	alignments	alignment	NNS
cord-289926-y1rjgbui	38	9	of	of	IN
cord-289926-y1rjgbui	38	10	randomized	randomized	JJ
cord-289926-y1rjgbui	38	11	sequences	sequence	NNS
cord-289926-y1rjgbui	38	12	were	be	VBD
cord-289926-y1rjgbui	38	13	then	then	RB
cord-289926-y1rjgbui	38	14	used	use	VBN
cord-289926-y1rjgbui	38	15	to	to	TO
cord-289926-y1rjgbui	38	16	calculate	calculate	VB
cord-289926-y1rjgbui	38	17	the	the	DT
cord-289926-y1rjgbui	38	18	Z	z	NN
cord-289926-y1rjgbui	38	19	score	score	NN
cord-289926-y1rjgbui	38	20	1	1	CD
cord-289926-y1rjgbui	38	21	for	for	IN
cord-289926-y1rjgbui	38	22	the	the	DT
cord-289926-y1rjgbui	38	23	original	original	JJ
cord-289926-y1rjgbui	38	24	alignment	alignment	NN
cord-289926-y1rjgbui	38	25	.	.	.
cord-289926-y1rjgbui	39	1	The	the	DT
cord-289926-y1rjgbui	39	2	SWISS	swiss	JJ
cord-289926-y1rjgbui	39	3	-	-	HYPH
cord-289926-y1rjgbui	39	4	PROT	prot	NN
cord-289926-y1rjgbui	39	5	database	database	NN
cord-289926-y1rjgbui	39	6	release	release	NN
cord-289926-y1rjgbui	39	7	33	33	CD
cord-289926-y1rjgbui	39	8	(	(	-LRB-
cord-289926-y1rjgbui	39	9	2/96	2/96	CD
cord-289926-y1rjgbui	39	10	)	)	-RRB-
cord-289926-y1rjgbui	39	11	was	be	VBD
cord-289926-y1rjgbui	39	12	used	use	VBN
cord-289926-y1rjgbui	39	13	for	for	IN
cord-289926-y1rjgbui	39	14	database	database	NN
cord-289926-y1rjgbui	39	15	searches	search	NNS
cord-289926-y1rjgbui	39	16	.	.	.
cord-289926-y1rjgbui	40	1	Evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	40	2	profiles	profile	NNS
cord-289926-y1rjgbui	40	3	[	[	-LRB-
cord-289926-y1rjgbui	40	4	27	27	CD
cord-289926-y1rjgbui	40	5	]	]	-RRB-
cord-289926-y1rjgbui	40	6	were	be	VBD
cord-289926-y1rjgbui	40	7	constructed	construct	VBN
cord-289926-y1rjgbui	40	8	from	from	IN
cord-289926-y1rjgbui	40	9	groups	group	NNS
cord-289926-y1rjgbui	40	10	of	of	IN
cord-289926-y1rjgbui	40	11	sequences	sequence	NNS
cord-289926-y1rjgbui	40	12	aligned	align	VBN
cord-289926-y1rjgbui	40	13	with	with	IN
cord-289926-y1rjgbui	40	14	the	the	DT
cord-289926-y1rjgbui	40	15	PILEUP	PILEUP	NNP
cord-289926-y1rjgbui	40	16	program	program	NN
cord-289926-y1rjgbui	40	17	.	.	.
cord-289926-y1rjgbui	41	1	A	a	DT
cord-289926-y1rjgbui	41	2	profile	profile	NN
cord-289926-y1rjgbui	41	3	is	be	VBZ
cord-289926-y1rjgbui	41	4	a	a	DT
cord-289926-y1rjgbui	41	5	two	two	CD
cord-289926-y1rjgbui	41	6	-	-	HYPH
cord-289926-y1rjgbui	41	7	dimensional	dimensional	JJ
cord-289926-y1rjgbui	41	8	weight	weight	NN
cord-289926-y1rjgbui	41	9	matrix	matrix	NN
cord-289926-y1rjgbui	41	10	that	that	WDT
cord-289926-y1rjgbui	41	11	describes	describe	VBZ
cord-289926-y1rjgbui	41	12	the	the	DT
cord-289926-y1rjgbui	41	13	alignment	alignment	NN
cord-289926-y1rjgbui	41	14	of	of	IN
cord-289926-y1rjgbui	41	15	a	a	DT
cord-289926-y1rjgbui	41	16	group	group	NN
cord-289926-y1rjgbui	41	17	of	of	IN
cord-289926-y1rjgbui	41	18	sequences	sequence	NNS
cord-289926-y1rjgbui	41	19	.	.	.
cord-289926-y1rjgbui	42	1	Each	each	DT
cord-289926-y1rjgbui	42	2	row	row	NN
cord-289926-y1rjgbui	42	3	of	of	IN
cord-289926-y1rjgbui	42	4	a	a	DT
cord-289926-y1rjgbui	42	5	profile	profile	NN
cord-289926-y1rjgbui	42	6	describes	describe	VBZ
cord-289926-y1rjgbui	42	7	a	a	DT
cord-289926-y1rjgbui	42	8	single	single	JJ
cord-289926-y1rjgbui	42	9	position	position	NN
cord-289926-y1rjgbui	42	10	in	in	IN
cord-289926-y1rjgbui	42	11	the	the	DT
cord-289926-y1rjgbui	42	12	alignment	alignment	NN
cord-289926-y1rjgbui	42	13	;	;	:
cord-289926-y1rjgbui	42	14	its	-PRON-	PRP$
cord-289926-y1rjgbui	42	15	20	20	CD
cord-289926-y1rjgbui	42	16	values	value	NNS
cord-289926-y1rjgbui	42	17	estimate	estimate	VBP
cord-289926-y1rjgbui	42	18	the	the	DT
cord-289926-y1rjgbui	42	19	likelihood	likelihood	NN
cord-289926-y1rjgbui	42	20	that	that	IN
cord-289926-y1rjgbui	42	21	each	each	DT
cord-289926-y1rjgbui	42	22	of	of	IN
cord-289926-y1rjgbui	42	23	the	the	DT
cord-289926-y1rjgbui	42	24	20	20	CD
cord-289926-y1rjgbui	42	25	possible	possible	JJ
cord-289926-y1rjgbui	42	26	amino	amino	NN
cord-289926-y1rjgbui	42	27	acid	acid	NN
cord-289926-y1rjgbui	42	28	residues	residue	NNS
cord-289926-y1rjgbui	42	29	occurs	occur	VBZ
cord-289926-y1rjgbui	42	30	at	at	IN
cord-289926-y1rjgbui	42	31	this	this	DT
cord-289926-y1rjgbui	42	32	position	position	NN
cord-289926-y1rjgbui	42	33	in	in	IN
cord-289926-y1rjgbui	42	34	the	the	DT
cord-289926-y1rjgbui	42	35	alignment	alignment	NN
cord-289926-y1rjgbui	42	36	.	.	.
cord-289926-y1rjgbui	43	1	Two	two	CD
cord-289926-y1rjgbui	43	2	additional	additional	JJ
cord-289926-y1rjgbui	43	3	values	value	NNS
cord-289926-y1rjgbui	43	4	in	in	IN
cord-289926-y1rjgbui	43	5	each	each	DT
cord-289926-y1rjgbui	43	6	row	row	NN
cord-289926-y1rjgbui	43	7	represent	represent	VBP
cord-289926-y1rjgbui	43	8	the	the	DT
cord-289926-y1rjgbui	43	9	position	position	NN
cord-289926-y1rjgbui	43	10	-	-	HYPH
cord-289926-y1rjgbui	43	11	specific	specific	JJ
cord-289926-y1rjgbui	43	12	likelihood	likelihood	NN
cord-289926-y1rjgbui	43	13	of	of	IN
cord-289926-y1rjgbui	43	14	gap	gap	NN
cord-289926-y1rjgbui	43	15	initiation	initiation	NN
cord-289926-y1rjgbui	43	16	and	and	CC
cord-289926-y1rjgbui	43	17	extension	extension	NN
cord-289926-y1rjgbui	43	18	.	.	.
cord-289926-y1rjgbui	44	1	Evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	44	2	profiles	profile	NNS
cord-289926-y1rjgbui	44	3	improve	improve	VBP
cord-289926-y1rjgbui	44	4	the	the	DT
cord-289926-y1rjgbui	44	5	description	description	NN
cord-289926-y1rjgbui	44	6	of	of	IN
cord-289926-y1rjgbui	44	7	multiple	multiple	JJ
cord-289926-y1rjgbui	44	8	sequence	sequence	NN
cord-289926-y1rjgbui	44	9	alignments	alignment	NNS
cord-289926-y1rjgbui	44	10	by	by	IN
cord-289926-y1rjgbui	44	11	modeling	model	VBG
cord-289926-y1rjgbui	44	12	varying	vary	VBG
cord-289926-y1rjgbui	44	13	rates	rate	NNS
cord-289926-y1rjgbui	44	14	of	of	IN
cord-289926-y1rjgbui	44	15	sequence	sequence	NN
cord-289926-y1rjgbui	44	16	change	change	NN
cord-289926-y1rjgbui	44	17	at	at	IN
cord-289926-y1rjgbui	44	18	each	each	DT
cord-289926-y1rjgbui	44	19	position	position	NN
cord-289926-y1rjgbui	44	20	in	in	IN
cord-289926-y1rjgbui	44	21	the	the	DT
cord-289926-y1rjgbui	44	22	sequences	sequence	NNS
cord-289926-y1rjgbui	44	23	:	:	:
cord-289926-y1rjgbui	44	24	each	each	DT
cord-289926-y1rjgbui	44	25	position	position	NN
cord-289926-y1rjgbui	44	26	is	be	VBZ
cord-289926-y1rjgbui	44	27	modeled	model	VBN
cord-289926-y1rjgbui	44	28	using	use	VBG
cord-289926-y1rjgbui	44	29	the	the	DT
cord-289926-y1rjgbui	44	30	most	most	RBS
cord-289926-y1rjgbui	44	31	appropriate	appropriate	JJ
cord-289926-y1rjgbui	44	32	scoring	scoring	NN
cord-289926-y1rjgbui	44	33	matrix	matrix	NN
cord-289926-y1rjgbui	44	34	to	to	TO
cord-289926-y1rjgbui	44	35	reflect	reflect	VB
cord-289926-y1rjgbui	44	36	its	-PRON-	PRP$
cord-289926-y1rjgbui	44	37	rate	rate	NN
cord-289926-y1rjgbui	44	38	of	of	IN
cord-289926-y1rjgbui	44	39	change	change	NN
cord-289926-y1rjgbui	44	40	.	.	.
cord-289926-y1rjgbui	45	1	Sequence	sequence	NN
cord-289926-y1rjgbui	45	2	weighting	weighting	NN
cord-289926-y1rjgbui	45	3	,	,	,
cord-289926-y1rjgbui	45	4	based	base	VBN
cord-289926-y1rjgbui	45	5	on	on	IN
cord-289926-y1rjgbui	45	6	a	a	DT
cord-289926-y1rjgbui	45	7	modification	modification	NN
cord-289926-y1rjgbui	45	8	of	of	IN
cord-289926-y1rjgbui	45	9	Felsenstein	Felsenstein	NNP
cord-289926-y1rjgbui	45	10	's	's	POS
cord-289926-y1rjgbui	45	11	method	method	NN
cord-289926-y1rjgbui	45	12	[	[	-LRB-
cord-289926-y1rjgbui	45	13	19	19	CD
cord-289926-y1rjgbui	45	14	]	]	-RRB-
cord-289926-y1rjgbui	45	15	,	,	,
cord-289926-y1rjgbui	45	16	was	be	VBD
cord-289926-y1rjgbui	45	17	performed	perform	VBN
cord-289926-y1rjgbui	45	18	prior	prior	RB
cord-289926-y1rjgbui	45	19	to	to	IN
cord-289926-y1rjgbui	45	20	profile	profile	JJ
cord-289926-y1rjgbui	45	21	construction	construction	NN
cord-289926-y1rjgbui	45	22	,	,	,
cord-289926-y1rjgbui	45	23	so	so	IN
cord-289926-y1rjgbui	45	24	that	that	IN
cord-289926-y1rjgbui	45	25	the	the	DT
cord-289926-y1rjgbui	45	26	contribution	contribution	NN
cord-289926-y1rjgbui	45	27	of	of	IN
cord-289926-y1rjgbui	45	28	each	each	DT
cord-289926-y1rjgbui	45	29	sequence	sequence	NN
cord-289926-y1rjgbui	45	30	to	to	IN
cord-289926-y1rjgbui	45	31	the	the	DT
cord-289926-y1rjgbui	45	32	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	45	33	profile	profile	NN
cord-289926-y1rjgbui	45	34	is	be	VBZ
cord-289926-y1rjgbui	45	35	proportional	proportional	JJ
cord-289926-y1rjgbui	45	36	to	to	IN
cord-289926-y1rjgbui	45	37	the	the	DT
cord-289926-y1rjgbui	45	38	amount	amount	NN
cord-289926-y1rjgbui	45	39	of	of	IN
cord-289926-y1rjgbui	45	40	unique	unique	JJ
cord-289926-y1rjgbui	45	41	information	information	NN
cord-289926-y1rjgbui	45	42	it	-PRON-	PRP
cord-289926-y1rjgbui	45	43	contributes	contribute	VBZ
cord-289926-y1rjgbui	45	44	to	to	IN
cord-289926-y1rjgbui	45	45	the	the	DT
cord-289926-y1rjgbui	45	46	multiple	multiple	JJ
cord-289926-y1rjgbui	45	47	alignment	alignment	NN
cord-289926-y1rjgbui	45	48	.	.	.
cord-289926-y1rjgbui	46	1	Structure	structure	NN
cord-289926-y1rjgbui	46	2	-	-	HYPH
cord-289926-y1rjgbui	46	3	based	base	VBN
cord-289926-y1rjgbui	46	4	profiles	profile	NNS
cord-289926-y1rjgbui	46	5	(	(	-LRB-
cord-289926-y1rjgbui	46	6	to	to	TO
cord-289926-y1rjgbui	46	7	be	be	VB
cord-289926-y1rjgbui	46	8	described	describe	VBN
cord-289926-y1rjgbui	46	9	elsewhere	elsewhere	RB
cord-289926-y1rjgbui	46	10	)	)	-RRB-
cord-289926-y1rjgbui	46	11	are	be	VBP
cord-289926-y1rjgbui	46	12	constructed	construct	VBN
cord-289926-y1rjgbui	46	13	using	use	VBG
cord-289926-y1rjgbui	46	14	scoring	score	VBG
cord-289926-y1rjgbui	46	15	matrices	matrix	NNS
cord-289926-y1rjgbui	46	16	based	base	VBN
cord-289926-y1rjgbui	46	17	on	on	IN
cord-289926-y1rjgbui	46	18	secondary	secondary	JJ
cord-289926-y1rjgbui	46	19	structure	structure	NN
cord-289926-y1rjgbui	46	20	information	information	NN
cord-289926-y1rjgbui	46	21	.	.	.
cord-289926-y1rjgbui	47	1	Each	each	DT
cord-289926-y1rjgbui	47	2	position	position	NN
cord-289926-y1rjgbui	47	3	in	in	IN
cord-289926-y1rjgbui	47	4	the	the	DT
cord-289926-y1rjgbui	47	5	alignment	alignment	NN
cord-289926-y1rjgbui	47	6	is	be	VBZ
cord-289926-y1rjgbui	47	7	described	describe	VBN
cord-289926-y1rjgbui	47	8	as	as	IN
cord-289926-y1rjgbui	47	9	a	a	DT
cord-289926-y1rjgbui	47	10	mixture	mixture	NN
cord-289926-y1rjgbui	47	11	of	of	IN
cord-289926-y1rjgbui	47	12	four	four	CD
cord-289926-y1rjgbui	47	13	distributions	distribution	NNS
cord-289926-y1rjgbui	47	14	-one	-one	CD
cord-289926-y1rjgbui	47	15	for	for	IN
cord-289926-y1rjgbui	47	16	each	each	DT
cord-289926-y1rjgbui	47	17	of	of	IN
cord-289926-y1rjgbui	47	18	the	the	DT
cord-289926-y1rjgbui	47	19	secondary	secondary	JJ
cord-289926-y1rjgbui	47	20	structures	structure	NNS
cord-289926-y1rjgbui	47	21	(	(	-LRB-
cord-289926-y1rjgbui	47	22	helix	helix	NN
cord-289926-y1rjgbui	47	23	,	,	,
cord-289926-y1rjgbui	47	24	sheet	sheet	NN
cord-289926-y1rjgbui	47	25	,	,	,
cord-289926-y1rjgbui	47	26	turn	turn	VB
cord-289926-y1rjgbui	47	27	and	and	CC
cord-289926-y1rjgbui	47	28	coil	coil	NN
cord-289926-y1rjgbui	47	29	)	)	-RRB-
cord-289926-y1rjgbui	47	30	.	.	.
cord-289926-y1rjgbui	48	1	Each	each	DT
cord-289926-y1rjgbui	48	2	distribution	distribution	NN
cord-289926-y1rjgbui	48	3	is	be	VBZ
cord-289926-y1rjgbui	48	4	weighted	weight	VBN
cord-289926-y1rjgbui	48	5	by	by	IN
cord-289926-y1rjgbui	48	6	the	the	DT
cord-289926-y1rjgbui	48	7	likelihood	likelihood	NN
cord-289926-y1rjgbui	48	8	of	of	IN
cord-289926-y1rjgbui	48	9	the	the	DT
cord-289926-y1rjgbui	48	10	observed	observed	JJ
cord-289926-y1rjgbui	48	11	residue	residue	NN
cord-289926-y1rjgbui	48	12	distribution	distribution	NN
cord-289926-y1rjgbui	48	13	at	at	IN
cord-289926-y1rjgbui	48	14	a	a	DT
cord-289926-y1rjgbui	48	15	given	give	VBN
cord-289926-y1rjgbui	48	16	position	position	NN
cord-289926-y1rjgbui	48	17	being	be	VBG
cord-289926-y1rjgbui	48	18	found	find	VBN
cord-289926-y1rjgbui	48	19	in	in	IN
cord-289926-y1rjgbui	48	20	a	a	DT
cord-289926-y1rjgbui	48	21	specific	specific	JJ
cord-289926-y1rjgbui	48	22	secondary	secondary	JJ
cord-289926-y1rjgbui	48	23	structure	structure	NN
cord-289926-y1rjgbui	48	24	.	.	.
cord-289926-y1rjgbui	49	1	New	new	JJ
cord-289926-y1rjgbui	49	2	sequences	sequence	NNS
cord-289926-y1rjgbui	49	3	identified	identify	VBN
cord-289926-y1rjgbui	49	4	during	during	IN
cord-289926-y1rjgbui	49	5	the	the	DT
cord-289926-y1rjgbui	49	6	database	database	NN
cord-289926-y1rjgbui	49	7	search	search	NN
cord-289926-y1rjgbui	49	8	with	with	IN
cord-289926-y1rjgbui	49	9	the	the	DT
cord-289926-y1rjgbui	49	10	profile	profile	NN
cord-289926-y1rjgbui	49	11	of	of	IN
cord-289926-y1rjgbui	49	12	the	the	DT
cord-289926-y1rjgbui	49	13	HDAg	HDAg	NNP
cord-289926-y1rjgbui	49	14	family	family	NN
cord-289926-y1rjgbui	49	15	were	be	VBD
cord-289926-y1rjgbui	49	16	then	then	RB
cord-289926-y1rjgbui	49	17	re	re	VBN
cord-289926-y1rjgbui	49	18	-	-	VBN
cord-289926-y1rjgbui	49	19	aligned	align	VBN
cord-289926-y1rjgbui	49	20	to	to	IN
cord-289926-y1rjgbui	49	21	this	this	DT
cord-289926-y1rjgbui	49	22	profile	profile	NN
cord-289926-y1rjgbui	49	23	with	with	IN
cord-289926-y1rjgbui	49	24	the	the	DT
cord-289926-y1rjgbui	49	25	PROFILEGAP	PROFILEGAP	NNP
cord-289926-y1rjgbui	49	26	program	program	NN
cord-289926-y1rjgbui	49	27	using	use	VBG
cord-289926-y1rjgbui	49	28	default	default	NN
cord-289926-y1rjgbui	49	29	gap	gap	NN
cord-289926-y1rjgbui	49	30	opening	opening	NN
cord-289926-y1rjgbui	49	31	and	and	CC
cord-289926-y1rjgbui	49	32	gap	gap	NN
cord-289926-y1rjgbui	49	33	extension	extension	NN
cord-289926-y1rjgbui	49	34	penalties	penalty	NNS
cord-289926-y1rjgbui	49	35	(	(	-LRB-
cord-289926-y1rjgbui	49	36	GapOpen=3.0	GapOpen=3.0	NNP
cord-289926-y1rjgbui	49	37	,	,	,
cord-289926-y1rjgbui	49	38	GapExtend=0.1	GapExtend=0.1	NNP
cord-289926-y1rjgbui	49	39	)	)	-RRB-
cord-289926-y1rjgbui	49	40	.	.	.
cord-289926-y1rjgbui	50	1	The	the	DT
cord-289926-y1rjgbui	50	2	Profilegap	Profilegap	NNP
cord-289926-y1rjgbui	50	3	program	program	NN
cord-289926-y1rjgbui	50	4	is	be	VBZ
cord-289926-y1rjgbui	50	5	based	base	VBN
cord-289926-y1rjgbui	50	6	on	on	IN
cord-289926-y1rjgbui	50	7	an	an	DT
cord-289926-y1rjgbui	50	8	extension	extension	NN
cord-289926-y1rjgbui	50	9	of	of	IN
cord-289926-y1rjgbui	50	10	the	the	DT
cord-289926-y1rjgbui	50	11	Smith	Smith	NNP
cord-289926-y1rjgbui	50	12	-	-	HYPH
cord-289926-y1rjgbui	50	13	Waterman	Waterman	NNP
cord-289926-y1rjgbui	50	14	local	local	JJ
cord-289926-y1rjgbui	50	15	similarity	similarity	NN
cord-289926-y1rjgbui	50	16	algorithm	algorithm	NN
cord-289926-y1rjgbui	50	17	[	[	-LRB-
cord-289926-y1rjgbui	50	18	26	26	CD
cord-289926-y1rjgbui	50	19	,	,	,
cord-289926-y1rjgbui	50	20	42	42	CD
cord-289926-y1rjgbui	50	21	]	]	-RRB-
cord-289926-y1rjgbui	50	22	.	.	.
cord-289926-y1rjgbui	51	1	The	the	DT
cord-289926-y1rjgbui	51	2	GCG	GCG	NNP
cord-289926-y1rjgbui	51	3	Package	Package	NNP
cord-289926-y1rjgbui	51	4	FRAMESEARCH	FRAMESEARCH	NNP
cord-289926-y1rjgbui	51	5	program	program	NN
cord-289926-y1rjgbui	51	6	was	be	VBD
cord-289926-y1rjgbui	51	7	used	use	VBN
cord-289926-y1rjgbui	51	8	to	to	TO
cord-289926-y1rjgbui	51	9	search	search	VB
cord-289926-y1rjgbui	51	10	for	for	IN
cord-289926-y1rjgbui	51	11	sequencing	sequencing	NN
cord-289926-y1rjgbui	51	12	errors	error	NNS
cord-289926-y1rjgbui	51	13	and	and	CC
cord-289926-y1rjgbui	51	14	potential	potential	JJ
cord-289926-y1rjgbui	51	15	frameshifts	frameshift	NNS
cord-289926-y1rjgbui	51	16	during	during	IN
cord-289926-y1rjgbui	51	17	translation	translation	NN
cord-289926-y1rjgbui	51	18	.	.	.
cord-289926-y1rjgbui	52	1	Framesearch	Framesearch	NNP
cord-289926-y1rjgbui	52	2	is	be	VBZ
cord-289926-y1rjgbui	52	3	based	base	VBN
cord-289926-y1rjgbui	52	4	on	on	IN
cord-289926-y1rjgbui	52	5	a	a	DT
cord-289926-y1rjgbui	52	6	local	local	JJ
cord-289926-y1rjgbui	52	7	alignment	alignment	NN
cord-289926-y1rjgbui	52	8	algorithm	algorithm	NN
cord-289926-y1rjgbui	52	9	that	that	WDT
cord-289926-y1rjgbui	52	10	allows	allow	VBZ
cord-289926-y1rjgbui	52	11	introduction	introduction	NN
cord-289926-y1rjgbui	52	12	of	of	IN
cord-289926-y1rjgbui	52	13	the	the	DT
cord-289926-y1rjgbui	52	14	gaps	gap	NNS
cord-289926-y1rjgbui	52	15	and	and	CC
cord-289926-y1rjgbui	52	16	shifting	shift	VBG
cord-289926-y1rjgbui	52	17	of	of	IN
cord-289926-y1rjgbui	52	18	the	the	DT
cord-289926-y1rjgbui	52	19	reading	reading	NN
cord-289926-y1rjgbui	52	20	frame	frame	NN
cord-289926-y1rjgbui	52	21	.	.	.
cord-289926-y1rjgbui	53	1	Framesearch	Framesearch	NNP
cord-289926-y1rjgbui	53	2	was	be	VBD
cord-289926-y1rjgbui	53	3	used	use	VBN
cord-289926-y1rjgbui	53	4	under	under	IN
cord-289926-y1rjgbui	53	5	the	the	DT
cord-289926-y1rjgbui	53	6	following	follow	VBG
cord-289926-y1rjgbui	53	7	conditions	condition	NNS
cord-289926-y1rjgbui	53	8	:	:	:
cord-289926-y1rjgbui	53	9	GapOpen=3.0	gapopen=3.0	ADD
cord-289926-y1rjgbui	53	10	,	,	,
cord-289926-y1rjgbui	53	11	GapExtend=0.5	gapextend=0.5	NN
cord-289926-y1rjgbui	53	12	,	,	,
cord-289926-y1rjgbui	53	13	scoring	score	VBG
cord-289926-y1rjgbui	53	14	matrix	matrix	NN
cord-289926-y1rjgbui	53	15	:	:	:
cord-289926-y1rjgbui	53	16	PAM150	PAM150	NNP
cord-289926-y1rjgbui	53	17	.	.	.
cord-289926-y1rjgbui	54	1	PAM	PAM	NNP
cord-289926-y1rjgbui	54	2	matrices	matrix	NNS
cord-289926-y1rjgbui	54	3	at	at	IN
cord-289926-y1rjgbui	54	4	distances	distance	NNS
cord-289926-y1rjgbui	54	5	100	100	CD
cord-289926-y1rjgbui	54	6	,	,	,
cord-289926-y1rjgbui	54	7	150	150	CD
cord-289926-y1rjgbui	54	8	,	,	,
cord-289926-y1rjgbui	54	9	200	200	CD
cord-289926-y1rjgbui	54	10	and	and	CC
cord-289926-y1rjgbui	54	11	250	250	CD
cord-289926-y1rjgbui	54	12	were	be	VBD
cord-289926-y1rjgbui	54	13	tested	test	VBN
cord-289926-y1rjgbui	54	14	[	[	-LRB-
cord-289926-y1rjgbui	54	15	12	12	CD
cord-289926-y1rjgbui	54	16	]	]	-RRB-
cord-289926-y1rjgbui	54	17	.	.	.
cord-289926-y1rjgbui	55	1	We	-PRON-	PRP
cord-289926-y1rjgbui	55	2	found	find	VBD
cord-289926-y1rjgbui	55	3	that	that	IN
cord-289926-y1rjgbui	55	4	the	the	DT
cord-289926-y1rjgbui	55	5	PAM150	pam150	JJ
cord-289926-y1rjgbui	55	6	scoring	scoring	NN
cord-289926-y1rjgbui	55	7	matrix	matrix	NN
cord-289926-y1rjgbui	55	8	consistently	consistently	RB
cord-289926-y1rjgbui	55	9	produced	produce	VBD
cord-289926-y1rjgbui	55	10	alignments	alignment	NNS
cord-289926-y1rjgbui	55	11	with	with	IN
cord-289926-y1rjgbui	55	12	more	more	RBR
cord-289926-y1rjgbui	55	13	significant	significant	JJ
cord-289926-y1rjgbui	55	14	Z	z	NN
cord-289926-y1rjgbui	55	15	scores	score	NNS
cord-289926-y1rjgbui	55	16	.	.	.
cord-289926-y1rjgbui	56	1	Thus	thus	RB
cord-289926-y1rjgbui	56	2	PAM150	PAM150	NNP
cord-289926-y1rjgbui	56	3	was	be	VBD
cord-289926-y1rjgbui	56	4	used	use	VBN
cord-289926-y1rjgbui	56	5	as	as	IN
cord-289926-y1rjgbui	56	6	a	a	DT
cord-289926-y1rjgbui	56	7	scoring	scoring	NN
cord-289926-y1rjgbui	56	8	matrix	matrix	NN
cord-289926-y1rjgbui	56	9	throughout	throughout	IN
cord-289926-y1rjgbui	56	10	this	this	DT
cord-289926-y1rjgbui	56	11	work	work	NN
cord-289926-y1rjgbui	56	12	.	.	.
cord-289926-y1rjgbui	57	1	P	p	NN
cord-289926-y1rjgbui	57	2	-	-	HYPH
cord-289926-y1rjgbui	57	3	values	value	NNS
cord-289926-y1rjgbui	57	4	,	,	,
cord-289926-y1rjgbui	57	5	the	the	DT
cord-289926-y1rjgbui	57	6	probability	probability	NN
cord-289926-y1rjgbui	57	7	of	of	IN
cord-289926-y1rjgbui	57	8	achieving	achieve	VBG
cord-289926-y1rjgbui	57	9	an	an	DT
cord-289926-y1rjgbui	57	10	equal	equal	JJ
cord-289926-y1rjgbui	57	11	or	or	CC
cord-289926-y1rjgbui	57	12	better	well	JJR
cord-289926-y1rjgbui	57	13	score	score	NN
cord-289926-y1rjgbui	57	14	,	,	,
cord-289926-y1rjgbui	57	15	for	for	IN
cord-289926-y1rjgbui	57	16	the	the	DT
cord-289926-y1rjgbui	57	17	best	good	JJS
cord-289926-y1rjgbui	57	18	partial	partial	JJ
cord-289926-y1rjgbui	57	19	alignments	alignment	NNS
cord-289926-y1rjgbui	57	20	of	of	IN
cord-289926-y1rjgbui	57	21	SRY	sry	NN
cord-289926-y1rjgbui	57	22	-	-	HYPH
cord-289926-y1rjgbui	57	23	HDAg	HDAg	NNS
cord-289926-y1rjgbui	57	24	and	and	CC
cord-289926-y1rjgbui	57	25	DIPA	DIPA	NNP
cord-289926-y1rjgbui	57	26	-	-	HYPH
cord-289926-y1rjgbui	57	27	HDAg	HDAg	NNP
cord-289926-y1rjgbui	57	28	(	(	-LRB-
cord-289926-y1rjgbui	57	29	Fig	Fig	NNP
cord-289926-y1rjgbui	57	30	.	.	.
cord-289926-y1rjgbui	57	31	2A	2a	CD
cord-289926-y1rjgbui	57	32	,	,	,
cord-289926-y1rjgbui	57	33	C	C	NNP
cord-289926-y1rjgbui	57	34	)	)	-RRB-
cord-289926-y1rjgbui	57	35	were	be	VBD
cord-289926-y1rjgbui	57	36	calculated	calculate	VBN
cord-289926-y1rjgbui	57	37	by	by	IN
cord-289926-y1rjgbui	57	38	the	the	DT
cord-289926-y1rjgbui	57	39	Monte	Monte	NNP
cord-289926-y1rjgbui	57	40	Carlo	Carlo	NNP
cord-289926-y1rjgbui	57	41	procedure	procedure	NN
cord-289926-y1rjgbui	57	42	described	describe	VBN
cord-289926-y1rjgbui	57	43	above	above	RB
cord-289926-y1rjgbui	57	44	(	(	-LRB-
cord-289926-y1rjgbui	57	45	see	see	VB
cord-289926-y1rjgbui	57	46	Sequence	sequence	NN
cord-289926-y1rjgbui	57	47	alignments	alignment	NNS
cord-289926-y1rjgbui	57	48	)	)	-RRB-
cord-289926-y1rjgbui	57	49	.	.	.
cord-289926-y1rjgbui	58	1	Randomly	randomly	RB
cord-289926-y1rjgbui	58	2	generated	generate	VBN
cord-289926-y1rjgbui	58	3	sequences	sequence	NNS
cord-289926-y1rjgbui	58	4	with	with	IN
cord-289926-y1rjgbui	58	5	the	the	DT
cord-289926-y1rjgbui	58	6	same	same	JJ
cord-289926-y1rjgbui	58	7	composition	composition	NN
cord-289926-y1rjgbui	58	8	as	as	IN
cord-289926-y1rjgbui	58	9	the	the	DT
cord-289926-y1rjgbui	58	10	best	good	JJS
cord-289926-y1rjgbui	58	11	locally	locally	RB
cord-289926-y1rjgbui	58	12	matching	match	VBG
cord-289926-y1rjgbui	58	13	segments	segment	NNS
cord-289926-y1rjgbui	58	14	were	be	VBD
cord-289926-y1rjgbui	58	15	compared	compare	VBN
cord-289926-y1rjgbui	58	16	to	to	IN
cord-289926-y1rjgbui	58	17	the	the	DT
cord-289926-y1rjgbui	58	18	respective	respective	JJ
cord-289926-y1rjgbui	58	19	query	query	NN
cord-289926-y1rjgbui	58	20	sequence	sequence	NN
cord-289926-y1rjgbui	58	21	1,000,000	1,000,000	CD
cord-289926-y1rjgbui	58	22	times	time	NNS
cord-289926-y1rjgbui	58	23	.	.	.
cord-289926-y1rjgbui	59	1	This	this	DT
cord-289926-y1rjgbui	59	2	is	be	VBZ
cord-289926-y1rjgbui	59	3	a	a	DT
cord-289926-y1rjgbui	59	4	very	very	RB
cord-289926-y1rjgbui	59	5	conservative	conservative	JJ
cord-289926-y1rjgbui	59	6	test	test	NN
cord-289926-y1rjgbui	59	7	since	since	IN
cord-289926-y1rjgbui	59	8	the	the	DT
cord-289926-y1rjgbui	59	9	compositions	composition	NNS
cord-289926-y1rjgbui	59	10	of	of	IN
cord-289926-y1rjgbui	59	11	these	these	DT
cord-289926-y1rjgbui	59	12	segments	segment	NNS
cord-289926-y1rjgbui	59	13	are	be	VBP
cord-289926-y1rjgbui	59	14	biased	biased	JJ
cord-289926-y1rjgbui	59	15	.	.	.
cord-289926-y1rjgbui	60	1	Theory	theory	NN
cord-289926-y1rjgbui	60	2	suggests	suggest	VBZ
cord-289926-y1rjgbui	60	3	that	that	DT
cord-289926-y1rjgbui	60	4	sequence	sequence	NN
cord-289926-y1rjgbui	60	5	alignment	alignment	NN
cord-289926-y1rjgbui	60	6	scores	score	NNS
cord-289926-y1rjgbui	60	7	follow	follow	VBP
cord-289926-y1rjgbui	60	8	an	an	DT
cord-289926-y1rjgbui	60	9	extreme	extreme	JJ
cord-289926-y1rjgbui	60	10	value	value	NN
cord-289926-y1rjgbui	60	11	distribution	distribution	NN
cord-289926-y1rjgbui	60	12	(	(	-LRB-
cord-289926-y1rjgbui	60	13	EVD	EVD	NNP
cord-289926-y1rjgbui	60	14	)	)	-RRB-
cord-289926-y1rjgbui	60	15	similar	similar	JJ
cord-289926-y1rjgbui	60	16	to	to	IN
cord-289926-y1rjgbui	60	17	that	that	DT
cord-289926-y1rjgbui	60	18	of	of	IN
cord-289926-y1rjgbui	60	19	maximal	maximal	JJ
cord-289926-y1rjgbui	60	20	segment	segment	NN
cord-289926-y1rjgbui	60	21	scores	score	NNS
cord-289926-y1rjgbui	60	22	[	[	-LRB-
cord-289926-y1rjgbui	60	23	29	29	CD
cord-289926-y1rjgbui	60	24	]	]	-RRB-
cord-289926-y1rjgbui	60	25	,	,	,
cord-289926-y1rjgbui	60	26	i.e.	i.e.	FW
cord-289926-y1rjgbui	60	27	The	the	DT
cord-289926-y1rjgbui	60	28	logarithm	logarithm	NN
cord-289926-y1rjgbui	60	29	of	of	IN
cord-289926-y1rjgbui	60	30	the	the	DT
cord-289926-y1rjgbui	60	31	frequencies	frequency	NNS
cord-289926-y1rjgbui	60	32	of	of	IN
cord-289926-y1rjgbui	60	33	occurrence	occurrence	NN
cord-289926-y1rjgbui	60	34	of	of	IN
cord-289926-y1rjgbui	60	35	scores	score	NNS
cord-289926-y1rjgbui	60	36	greater	great	JJR
cord-289926-y1rjgbui	60	37	than	than	IN
cord-289926-y1rjgbui	60	38	or	or	CC
cord-289926-y1rjgbui	60	39	equal	equal	JJ
cord-289926-y1rjgbui	60	40	to	to	IN
cord-289926-y1rjgbui	60	41	specific	specific	JJ
cord-289926-y1rjgbui	60	42	values	value	NNS
cord-289926-y1rjgbui	60	43	were	be	VBD
cord-289926-y1rjgbui	60	44	plotted	plot	VBN
cord-289926-y1rjgbui	60	45	for	for	IN
cord-289926-y1rjgbui	60	46	the	the	DT
cord-289926-y1rjgbui	60	47	top	top	JJ
cord-289926-y1rjgbui	60	48	500	500	CD
cord-289926-y1rjgbui	60	49	(	(	-LRB-
cord-289926-y1rjgbui	60	50	0.05	0.05	CD
cord-289926-y1rjgbui	60	51	%	%	NN
cord-289926-y1rjgbui	60	52	)	)	-RRB-
cord-289926-y1rjgbui	60	53	random	random	JJ
cord-289926-y1rjgbui	60	54	alignments	alignment	NNS
cord-289926-y1rjgbui	60	55	and	and	CC
cord-289926-y1rjgbui	60	56	the	the	DT
cord-289926-y1rjgbui	60	57	P	p	NN
cord-289926-y1rjgbui	60	58	-	-	HYPH
cord-289926-y1rjgbui	60	59	values	value	NNS
cord-289926-y1rjgbui	60	60	calculated	calculate	VBN
cord-289926-y1rjgbui	60	61	from	from	IN
cord-289926-y1rjgbui	60	62	the	the	DT
cord-289926-y1rjgbui	60	63	resulting	result	VBG
cord-289926-y1rjgbui	60	64	plot	plot	NN
cord-289926-y1rjgbui	60	65	(	(	-LRB-
cord-289926-y1rjgbui	60	66	Fig	Fig	NNP
cord-289926-y1rjgbui	60	67	.	.	.
cord-289926-y1rjgbui	60	68	4	4	CD
cord-289926-y1rjgbui	60	69	)	)	-RRB-
cord-289926-y1rjgbui	60	70	.	.	.
cord-289926-y1rjgbui	61	1	The	the	DT
cord-289926-y1rjgbui	61	2	similarity	similarity	NN
cord-289926-y1rjgbui	61	3	between	between	IN
cord-289926-y1rjgbui	61	4	the	the	DT
cord-289926-y1rjgbui	61	5	SRY	sry	NN
cord-289926-y1rjgbui	61	6	and	and	CC
cord-289926-y1rjgbui	61	7	HDAg	HDAg	NNP
cord-289926-y1rjgbui	61	8	was	be	VBD
cord-289926-y1rjgbui	61	9	noticed	notice	VBN
cord-289926-y1rjgbui	61	10	during	during	IN
cord-289926-y1rjgbui	61	11	SWISS	swiss	JJ
cord-289926-y1rjgbui	61	12	-	-	HYPH
cord-289926-y1rjgbui	61	13	PROT	prot	NN
cord-289926-y1rjgbui	61	14	database	database	NN
cord-289926-y1rjgbui	61	15	searches	search	NNS
cord-289926-y1rjgbui	61	16	with	with	IN
cord-289926-y1rjgbui	61	17	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	61	18	profiles	profile	NNS
cord-289926-y1rjgbui	61	19	[	[	-LRB-
cord-289926-y1rjgbui	61	20	27	27	CD
cord-289926-y1rjgbui	61	21	]	]	-RRB-
cord-289926-y1rjgbui	61	22	constructed	construct	VBN
cord-289926-y1rjgbui	61	23	from	from	IN
cord-289926-y1rjgbui	61	24	a	a	DT
cord-289926-y1rjgbui	61	25	multiple	multiple	JJ
cord-289926-y1rjgbui	61	26	alignment	alignment	NN
cord-289926-y1rjgbui	61	27	of	of	IN
cord-289926-y1rjgbui	61	28	the	the	DT
cord-289926-y1rjgbui	61	29	RNA	RNA	NNP
cord-289926-y1rjgbui	61	30	-	-	HYPH
cord-289926-y1rjgbui	61	31	binding	bind	VBG
cord-289926-y1rjgbui	61	32	domain	domain	NN
cord-289926-y1rjgbui	61	33	of	of	IN
cord-289926-y1rjgbui	61	34	HDAg	hdag	NN
cord-289926-y1rjgbui	61	35	from	from	IN
cord-289926-y1rjgbui	61	36	nine	nine	CD
cord-289926-y1rjgbui	61	37	distinct	distinct	JJ
cord-289926-y1rjgbui	61	38	isolates	isolate	NNS
cord-289926-y1rjgbui	61	39	of	of	IN
cord-289926-y1rjgbui	61	40	HDV	HDV	NNP
cord-289926-y1rjgbui	61	41	.	.	.
cord-289926-y1rjgbui	62	1	Searches	search	NNS
cord-289926-y1rjgbui	62	2	with	with	IN
cord-289926-y1rjgbui	62	3	the	the	DT
cord-289926-y1rjgbui	62	4	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	62	5	profile	profile	NN
cord-289926-y1rjgbui	62	6	identified	identify	VBD
cord-289926-y1rjgbui	62	7	several	several	JJ
cord-289926-y1rjgbui	62	8	target	target	NN
cord-289926-y1rjgbui	62	9	sequences	sequence	NNS
cord-289926-y1rjgbui	62	10	that	that	WDT
cord-289926-y1rjgbui	62	11	contained	contain	VBD
cord-289926-y1rjgbui	62	12	HMG	HMG	NNP
cord-289926-y1rjgbui	62	13	boxes	box	NNS
cord-289926-y1rjgbui	62	14	,	,	,
cord-289926-y1rjgbui	62	15	such	such	JJ
cord-289926-y1rjgbui	62	16	as	as	IN
cord-289926-y1rjgbui	62	17	HMGI	HMGI	NNP
cord-289926-y1rjgbui	62	18	and	and	CC
cord-289926-y1rjgbui	62	19	HMGY	HMGY	NNP
cord-289926-y1rjgbui	62	20	with	with	IN
cord-289926-y1rjgbui	62	21	Z	z	NN
cord-289926-y1rjgbui	62	22	score	score	NN
cord-289926-y1rjgbui	62	23	>	>	XX
cord-289926-y1rjgbui	62	24	7.0	7.0	CD
cord-289926-y1rjgbui	62	25	.	.	.
cord-289926-y1rjgbui	63	1	Searches	search	NNS
cord-289926-y1rjgbui	63	2	with	with	IN
cord-289926-y1rjgbui	63	3	profiles	profile	NNS
cord-289926-y1rjgbui	63	4	based	base	VBN
cord-289926-y1rjgbui	63	5	on	on	IN
cord-289926-y1rjgbui	63	6	the	the	DT
cord-289926-y1rjgbui	63	7	predicted	predict	VBN
cord-289926-y1rjgbui	63	8	secondary	secondary	JJ
cord-289926-y1rjgbui	63	9	structures	structure	NNS
cord-289926-y1rjgbui	63	10	identified	identify	VBD
cord-289926-y1rjgbui	63	11	other	other	JJ
cord-289926-y1rjgbui	63	12	HMG	HMG	NNP
cord-289926-y1rjgbui	63	13	products	product	NNS
cord-289926-y1rjgbui	63	14	,	,	,
cord-289926-y1rjgbui	63	15	such	such	JJ
cord-289926-y1rjgbui	63	16	as	as	IN
cord-289926-y1rjgbui	63	17	HMG2	HMG2	NNP
cord-289926-y1rjgbui	63	18	HUMAN	HUMAN	NNP
cord-289926-y1rjgbui	63	19	and	and	CC
cord-289926-y1rjgbui	63	20	HMG2	HMG2	NNP
cord-289926-y1rjgbui	63	21	MOUSE	MOUSE	NNP
cord-289926-y1rjgbui	63	22	(	(	-LRB-
cord-289926-y1rjgbui	63	23	Z	z	NN
cord-289926-y1rjgbui	63	24	score	score	NN
cord-289926-y1rjgbui	63	25	>	>	XX
cord-289926-y1rjgbui	63	26	7.0	7.0	CD
cord-289926-y1rjgbui	63	27	)	)	-RRB-
cord-289926-y1rjgbui	63	28	,	,	,
cord-289926-y1rjgbui	63	29	and	and	CC
cord-289926-y1rjgbui	63	30	SRY	SRY	NNP
cord-289926-y1rjgbui	63	31	HORSE	HORSE	NNP
cord-289926-y1rjgbui	63	32	(	(	-LRB-
cord-289926-y1rjgbui	63	33	Z	Z	NNP
cord-289926-y1rjgbui	63	34	score>6.0	score>6.0	NNP
cord-289926-y1rjgbui	63	35	)	)	-RRB-
cord-289926-y1rjgbui	63	36	.	.	.
cord-289926-y1rjgbui	64	1	Pairwise	pairwise	JJ
cord-289926-y1rjgbui	64	2	alignments	alignment	NNS
cord-289926-y1rjgbui	64	3	of	of	IN
cord-289926-y1rjgbui	64	4	these	these	DT
cord-289926-y1rjgbui	64	5	target	target	NN
cord-289926-y1rjgbui	64	6	sequences	sequence	NNS
cord-289926-y1rjgbui	64	7	with	with	IN
cord-289926-y1rjgbui	64	8	the	the	DT
cord-289926-y1rjgbui	64	9	RNA	RNA	NNP
cord-289926-y1rjgbui	64	10	-	-	HYPH
cord-289926-y1rjgbui	64	11	binding	bind	VBG
cord-289926-y1rjgbui	64	12	domain	domain	NN
cord-289926-y1rjgbui	64	13	of	of	IN
cord-289926-y1rjgbui	64	14	HDAg	HDAg	NNS
cord-289926-y1rjgbui	64	15	identified	identify	VBD
cord-289926-y1rjgbui	64	16	the	the	DT
cord-289926-y1rjgbui	64	17	HMG	HMG	NNP
cord-289926-y1rjgbui	64	18	box	box	NN
cord-289926-y1rjgbui	64	19	of	of	IN
cord-289926-y1rjgbui	64	20	SRY	SRY	NNP
cord-289926-y1rjgbui	64	21	as	as	IN
cord-289926-y1rjgbui	64	22	most	most	RBS
cord-289926-y1rjgbui	64	23	closely	closely	RB
cord-289926-y1rjgbui	64	24	related	related	JJ
cord-289926-y1rjgbui	64	25	sequence	sequence	NN
cord-289926-y1rjgbui	64	26	.	.	.
cord-289926-y1rjgbui	65	1	We	-PRON-	PRP
cord-289926-y1rjgbui	65	2	then	then	RB
cord-289926-y1rjgbui	65	3	constructed	construct	VBD
cord-289926-y1rjgbui	65	4	profiles	profile	NNS
cord-289926-y1rjgbui	65	5	from	from	IN
cord-289926-y1rjgbui	65	6	the	the	DT
cord-289926-y1rjgbui	65	7	SRY	SRY	NNP
cord-289926-y1rjgbui	65	8	-	-	HYPH
cord-289926-y1rjgbui	65	9	HDAg	hdag	NN
cord-289926-y1rjgbui	65	10	alignment	alignment	NN
cord-289926-y1rjgbui	65	11	,	,	,
cord-289926-y1rjgbui	65	12	which	which	WDT
cord-289926-y1rjgbui	65	13	,	,	,
cord-289926-y1rjgbui	65	14	upon	upon	IN
cord-289926-y1rjgbui	65	15	database	database	NN
cord-289926-y1rjgbui	65	16	search	search	NN
cord-289926-y1rjgbui	65	17	,	,	,
cord-289926-y1rjgbui	65	18	identified	identify	VBD
cord-289926-y1rjgbui	65	19	a	a	DT
cord-289926-y1rjgbui	65	20	large	large	JJ
cord-289926-y1rjgbui	65	21	family	family	NN
cord-289926-y1rjgbui	65	22	of	of	IN
cord-289926-y1rjgbui	65	23	proteins	protein	NNS
cord-289926-y1rjgbui	65	24	containing	contain	VBG
cord-289926-y1rjgbui	65	25	the	the	DT
cord-289926-y1rjgbui	65	26	HMG	HMG	NNP
cord-289926-y1rjgbui	65	27	box	box	NN
cord-289926-y1rjgbui	65	28	:	:	:
cord-289926-y1rjgbui	66	1	SRY	sry	UH
cord-289926-y1rjgbui	66	2	genes	gene	NNS
cord-289926-y1rjgbui	66	3	,	,	,
cord-289926-y1rjgbui	66	4	SRY	sry	NN
cord-289926-y1rjgbui	66	5	-	-	HYPH
cord-289926-y1rjgbui	66	6	related	relate	VBN
cord-289926-y1rjgbui	66	7	genes	gene	NNS
cord-289926-y1rjgbui	66	8	and	and	CC
cord-289926-y1rjgbui	66	9	SOX	SOX	NNP
cord-289926-y1rjgbui	66	10	(	(	-LRB-
cord-289926-y1rjgbui	66	11	SRY	sry	UH
cord-289926-y1rjgbui	66	12	box	box	NN
cord-289926-y1rjgbui	66	13	)	)	-RRB-
cord-289926-y1rjgbui	66	14	genes	gene	NNS
cord-289926-y1rjgbui	66	15	.	.	.
cord-289926-y1rjgbui	67	1	HDAg	HDAg	NNP
cord-289926-y1rjgbui	67	2	shows	show	VBZ
cord-289926-y1rjgbui	67	3	the	the	DT
cord-289926-y1rjgbui	67	4	highest	high	JJS
cord-289926-y1rjgbui	67	5	similarity	similarity	NN
cord-289926-y1rjgbui	67	6	to	to	IN
cord-289926-y1rjgbui	67	7	the	the	DT
cord-289926-y1rjgbui	67	8	HMG	HMG	NNP
cord-289926-y1rjgbui	67	9	box	box	NN
cord-289926-y1rjgbui	67	10	of	of	IN
cord-289926-y1rjgbui	67	11	the	the	DT
cord-289926-y1rjgbui	67	12	human	human	JJ
cord-289926-y1rjgbui	67	13	SRY	SRY	NNP
cord-289926-y1rjgbui	67	14	and	and	CC
cord-289926-y1rjgbui	67	15	SOX3	SOX3	NNP
cord-289926-y1rjgbui	67	16	gene	gene	NN
cord-289926-y1rjgbui	67	17	products	product	NNS
cord-289926-y1rjgbui	67	18	;	;	:
cord-289926-y1rjgbui	67	19	for	for	IN
cord-289926-y1rjgbui	67	20	the	the	DT
cord-289926-y1rjgbui	67	21	sake	sake	NN
cord-289926-y1rjgbui	67	22	of	of	IN
cord-289926-y1rjgbui	67	23	clarity	clarity	NN
cord-289926-y1rjgbui	67	24	only	only	RB
cord-289926-y1rjgbui	67	25	the	the	DT
cord-289926-y1rjgbui	67	26	SRY	SRY	NNP
cord-289926-y1rjgbui	67	27	sequence	sequence	NN
cord-289926-y1rjgbui	67	28	is	be	VBZ
cord-289926-y1rjgbui	67	29	shown	show	VBN
cord-289926-y1rjgbui	67	30	in	in	IN
cord-289926-y1rjgbui	67	31	the	the	DT
cord-289926-y1rjgbui	67	32	analysis	analysis	NN
cord-289926-y1rjgbui	67	33	below	below	RB
cord-289926-y1rjgbui	67	34	.	.	.
cord-289926-y1rjgbui	68	1	The	the	DT
cord-289926-y1rjgbui	68	2	best	good	JJS
cord-289926-y1rjgbui	68	3	alignment	alignment	NN
cord-289926-y1rjgbui	68	4	results	result	NNS
cord-289926-y1rjgbui	68	5	are	be	VBP
cord-289926-y1rjgbui	68	6	achieved	achieve	VBN
cord-289926-y1rjgbui	68	7	with	with	IN
cord-289926-y1rjgbui	68	8	the	the	DT
cord-289926-y1rjgbui	68	9	first	first	JJ
cord-289926-y1rjgbui	68	10	47	47	CD
cord-289926-y1rjgbui	68	11	residues	residue	NNS
cord-289926-y1rjgbui	68	12	of	of	IN
cord-289926-y1rjgbui	68	13	the	the	DT
cord-289926-y1rjgbui	68	14	HMG	HMG	NNP
cord-289926-y1rjgbui	68	15	box	box	NN
cord-289926-y1rjgbui	68	16	(	(	-LRB-
cord-289926-y1rjgbui	68	17	corresponding	correspond	VBG
cord-289926-y1rjgbui	68	18	to	to	IN
cord-289926-y1rjgbui	68	19	residues	residue	NNS
cord-289926-y1rjgbui	68	20	59	59	CD
cord-289926-y1rjgbui	68	21	-	-	SYM
cord-289926-y1rjgbui	68	22	105	105	CD
cord-289926-y1rjgbui	68	23	of	of	IN
cord-289926-y1rjgbui	68	24	SRY	SRY	NNP
cord-289926-y1rjgbui	68	25	)	)	-RRB-
cord-289926-y1rjgbui	68	26	aligned	align	VBN
cord-289926-y1rjgbui	68	27	to	to	IN
cord-289926-y1rjgbui	68	28	the	the	DT
cord-289926-y1rjgbui	68	29	42	42	CD
cord-289926-y1rjgbui	68	30	residues	residue	NNS
cord-289926-y1rjgbui	68	31	of	of	IN
cord-289926-y1rjgbui	68	32	RNA	rna	NN
cord-289926-y1rjgbui	68	33	-	-	HYPH
cord-289926-y1rjgbui	68	34	binding	bind	VBG
cord-289926-y1rjgbui	68	35	motif	motif	NN
cord-289926-y1rjgbui	68	36	of	of	IN
cord-289926-y1rjgbui	68	37	HDAg	hdag	NN
cord-289926-y1rjgbui	68	38	(	(	-LRB-
cord-289926-y1rjgbui	68	39	corresponding	correspond	VBG
cord-289926-y1rjgbui	68	40	to	to	IN
cord-289926-y1rjgbui	68	41	the	the	DT
cord-289926-y1rjgbui	68	42	residues	residue	NNS
cord-289926-y1rjgbui	68	43	86	86	CD
cord-289926-y1rjgbui	68	44	-	-	SYM
cord-289926-y1rjgbui	68	45	127	127	CD
cord-289926-y1rjgbui	68	46	)	)	-RRB-
cord-289926-y1rjgbui	68	47	:	:	:
cord-289926-y1rjgbui	68	48	54	54	CD
cord-289926-y1rjgbui	68	49	%	%	NN
cord-289926-y1rjgbui	68	50	identity	identity	NN
cord-289926-y1rjgbui	68	51	and	and	CC
cord-289926-y1rjgbui	68	52	72	72	CD
cord-289926-y1rjgbui	68	53	%	%	NN
cord-289926-y1rjgbui	68	54	sequence	sequence	NN
cord-289926-y1rjgbui	68	55	similarity	similarity	NN
cord-289926-y1rjgbui	68	56	are	be	VBP
cord-289926-y1rjgbui	68	57	observed	observe	VBN
cord-289926-y1rjgbui	68	58	(	(	-LRB-
cord-289926-y1rjgbui	68	59	Fig	Fig	NNP
cord-289926-y1rjgbui	68	60	.	.	.
cord-289926-y1rjgbui	68	61	2A	2a	CD
cord-289926-y1rjgbui	68	62	)	)	-RRB-
cord-289926-y1rjgbui	68	63	.	.	.
cord-289926-y1rjgbui	69	1	This	this	DT
cord-289926-y1rjgbui	69	2	region	region	NN
cord-289926-y1rjgbui	69	3	covers	cover	VBZ
cord-289926-y1rjgbui	69	4	the	the	DT
cord-289926-y1rjgbui	69	5	first	first	JJ
cord-289926-y1rjgbui	69	6	ARM	arm	NN
cord-289926-y1rjgbui	69	7	and	and	CC
cord-289926-y1rjgbui	69	8	part	part	NN
cord-289926-y1rjgbui	69	9	of	of	IN
cord-289926-y1rjgbui	69	10	the	the	DT
cord-289926-y1rjgbui	69	11	leucine	leucine	NNP
cord-289926-y1rjgbui	69	12	zipper	zipper	NN
cord-289926-y1rjgbui	69	13	region	region	NN
cord-289926-y1rjgbui	69	14	.	.	.
cord-289926-y1rjgbui	70	1	This	this	DT
cord-289926-y1rjgbui	70	2	is	be	VBZ
cord-289926-y1rjgbui	70	3	the	the	DT
cord-289926-y1rjgbui	70	4	only	only	JJ
cord-289926-y1rjgbui	70	5	alignment	alignment	NN
cord-289926-y1rjgbui	70	6	that	that	WDT
cord-289926-y1rjgbui	70	7	produces	produce	VBZ
cord-289926-y1rjgbui	70	8	a	a	DT
cord-289926-y1rjgbui	70	9	significant	significant	JJ
cord-289926-y1rjgbui	70	10	Z	z	NN
cord-289926-y1rjgbui	70	11	score	score	NN
cord-289926-y1rjgbui	70	12	(	(	-LRB-
cord-289926-y1rjgbui	70	13	see	see	VB
cord-289926-y1rjgbui	70	14	below	below	RB
cord-289926-y1rjgbui	70	15	)	)	-RRB-
cord-289926-y1rjgbui	70	16	.	.	.
cord-289926-y1rjgbui	71	1	A	a	DT
cord-289926-y1rjgbui	71	2	longer	long	JJR
cord-289926-y1rjgbui	71	3	alignment	alignment	NN
cord-289926-y1rjgbui	71	4	(	(	-LRB-
cord-289926-y1rjgbui	71	5	Fig	Fig	NNP
cord-289926-y1rjgbui	71	6	.	.	.
cord-289926-y1rjgbui	71	7	2B	2B	NNP
cord-289926-y1rjgbui	71	8	)	)	-RRB-
cord-289926-y1rjgbui	71	9	covers	cover	VBZ
cord-289926-y1rjgbui	71	10	two	two	CD
cord-289926-y1rjgbui	71	11	ARMs	arm	NNS
cord-289926-y1rjgbui	71	12	bracketing	bracket	VBG
cord-289926-y1rjgbui	71	13	a	a	DT
cord-289926-y1rjgbui	71	14	leucine	leucine	NN
cord-289926-y1rjgbui	71	15	zipper	zipper	NN
cord-289926-y1rjgbui	71	16	,	,	,
cord-289926-y1rjgbui	71	17	which	which	WDT
cord-289926-y1rjgbui	71	18	together	together	RB
cord-289926-y1rjgbui	71	19	comprise	comprise	VBP
cord-289926-y1rjgbui	71	20	the	the	DT
cord-289926-y1rjgbui	71	21	RNA	RNA	NNP
cord-289926-y1rjgbui	71	22	-	-	HYPH
cord-289926-y1rjgbui	71	23	binding	bind	VBG
cord-289926-y1rjgbui	71	24	motif	motif	NN
cord-289926-y1rjgbui	71	25	in	in	IN
cord-289926-y1rjgbui	71	26	HDAg	hdag	NN
cord-289926-y1rjgbui	71	27	.	.	.
cord-289926-y1rjgbui	72	1	This	this	DT
cord-289926-y1rjgbui	72	2	longer	long	JJR
cord-289926-y1rjgbui	72	3	alignment	alignment	NN
cord-289926-y1rjgbui	72	4	between	between	IN
cord-289926-y1rjgbui	72	5	HDAg	hdag	NN
cord-289926-y1rjgbui	72	6	and	and	CC
cord-289926-y1rjgbui	72	7	SRY	SRY	NNP
cord-289926-y1rjgbui	72	8	proteins	protein	NNS
cord-289926-y1rjgbui	72	9	extends	extend	VBZ
cord-289926-y1rjgbui	72	10	though	though	IN
cord-289926-y1rjgbui	72	11	the	the	DT
cord-289926-y1rjgbui	72	12	C	C	NNP
cord-289926-y1rjgbui	72	13	-	-	HYPH
cord-289926-y1rjgbui	72	14	terminal	terminal	NN
cord-289926-y1rjgbui	72	15	region	region	NN
cord-289926-y1rjgbui	72	16	of	of	IN
cord-289926-y1rjgbui	72	17	both	both	DT
cord-289926-y1rjgbui	72	18	proteins	protein	NNS
cord-289926-y1rjgbui	72	19	;	;	:
cord-289926-y1rjgbui	72	20	it	-PRON-	PRP
cord-289926-y1rjgbui	72	21	exhibits	exhibit	VBZ
cord-289926-y1rjgbui	72	22	33	33	CD
cord-289926-y1rjgbui	72	23	%	%	NN
cord-289926-y1rjgbui	72	24	identity	identity	NN
cord-289926-y1rjgbui	72	25	and	and	CC
cord-289926-y1rjgbui	72	26	59	59	CD
cord-289926-y1rjgbui	72	27	%	%	NN
cord-289926-y1rjgbui	72	28	similarity	similarity	NN
cord-289926-y1rjgbui	72	29	(	(	-LRB-
cord-289926-y1rjgbui	72	30	Fig	Fig	NNP
cord-289926-y1rjgbui	72	31	.	.	.
cord-289926-y1rjgbui	72	32	2B	2b	CD
cord-289926-y1rjgbui	72	33	)	)	-RRB-
cord-289926-y1rjgbui	72	34	.	.	.
cord-289926-y1rjgbui	73	1	The	the	DT
cord-289926-y1rjgbui	73	2	similarity	similarity	NN
cord-289926-y1rjgbui	73	3	in	in	IN
cord-289926-y1rjgbui	73	4	HDAg	hdag	NN
cord-289926-y1rjgbui	73	5	begins	begin	VBZ
cord-289926-y1rjgbui	73	6	ten	ten	CD
cord-289926-y1rjgbui	73	7	residues	residue	NNS
cord-289926-y1rjgbui	73	8	upstream	upstream	RB
cord-289926-y1rjgbui	73	9	of	of	IN
cord-289926-y1rjgbui	73	10	the	the	DT
cord-289926-y1rjgbui	73	11	left	left	JJ
cord-289926-y1rjgbui	73	12	ARM	arm	NN
cord-289926-y1rjgbui	73	13	and	and	CC
cord-289926-y1rjgbui	73	14	continues	continue	VBZ
cord-289926-y1rjgbui	73	15	into	into	IN
cord-289926-y1rjgbui	73	16	the	the	DT
cord-289926-y1rjgbui	73	17	leucine	leucine	NN
cord-289926-y1rjgbui	73	18	zipper	zipper	NN
cord-289926-y1rjgbui	73	19	,	,	,
cord-289926-y1rjgbui	73	20	where	where	WRB
cord-289926-y1rjgbui	73	21	similarity	similarity	NN
cord-289926-y1rjgbui	73	22	gradually	gradually	RB
cord-289926-y1rjgbui	73	23	weakens	weaken	VBZ
cord-289926-y1rjgbui	73	24	but	but	CC
cord-289926-y1rjgbui	73	25	is	be	VBZ
cord-289926-y1rjgbui	73	26	still	still	RB
cord-289926-y1rjgbui	73	27	detectable	detectable	JJ
cord-289926-y1rjgbui	73	28	through	through	IN
cord-289926-y1rjgbui	73	29	the	the	DT
cord-289926-y1rjgbui	73	30	right	right	JJ
cord-289926-y1rjgbui	73	31	ARM	arm	NN
cord-289926-y1rjgbui	73	32	of	of	IN
cord-289926-y1rjgbui	73	33	HDAg	hdag	NN
cord-289926-y1rjgbui	73	34	(	(	-LRB-
cord-289926-y1rjgbui	73	35	Fig	Fig	NNP
cord-289926-y1rjgbui	73	36	.	.	NNP
cord-289926-y1rjgbui	73	37	1	1	CD
cord-289926-y1rjgbui	73	38	,	,	,
cord-289926-y1rjgbui	73	39	2B	2b	CD
cord-289926-y1rjgbui	73	40	)	)	-RRB-
cord-289926-y1rjgbui	73	41	.	.	.
cord-289926-y1rjgbui	74	1	When	when	WRB
cord-289926-y1rjgbui	74	2	HDAg	HDAg	NNP
cord-289926-y1rjgbui	74	3	was	be	VBD
cord-289926-y1rjgbui	74	4	aligned	align	VBN
cord-289926-y1rjgbui	74	5	with	with	IN
cord-289926-y1rjgbui	74	6	ARM	arm	NN
cord-289926-y1rjgbui	74	7	-	-	HYPH
cord-289926-y1rjgbui	74	8	containing	contain	VBG
cord-289926-y1rjgbui	74	9	sequences	sequence	NNS
cord-289926-y1rjgbui	74	10	,	,	,
cord-289926-y1rjgbui	74	11	the	the	DT
cord-289926-y1rjgbui	74	12	best	good	JJS
cord-289926-y1rjgbui	74	13	alignment	alignment	NN
cord-289926-y1rjgbui	74	14	was	be	VBD
cord-289926-y1rjgbui	74	15	found	find	VBN
cord-289926-y1rjgbui	74	16	with	with	IN
cord-289926-y1rjgbui	74	17	HIV	HIV	NNP
cord-289926-y1rjgbui	74	18	rev	rev	NNP
cord-289926-y1rjgbui	74	19	gene	gene	NN
cord-289926-y1rjgbui	74	20	product	product	NN
cord-289926-y1rjgbui	74	21	.	.	.
cord-289926-y1rjgbui	75	1	This	this	DT
cord-289926-y1rjgbui	75	2	alignment	alignment	NN
cord-289926-y1rjgbui	75	3	shows	show	VBZ
cord-289926-y1rjgbui	75	4	39	39	CD
cord-289926-y1rjgbui	75	5	%	%	NN
cord-289926-y1rjgbui	75	6	identity	identity	NN
cord-289926-y1rjgbui	75	7	and	and	CC
cord-289926-y1rjgbui	75	8	63	63	CD
cord-289926-y1rjgbui	75	9	%	%	NN
cord-289926-y1rjgbui	75	10	similarity	similarity	NN
cord-289926-y1rjgbui	75	11	across	across	IN
cord-289926-y1rjgbui	75	12	the	the	DT
cord-289926-y1rjgbui	75	13	entire	entire	JJ
cord-289926-y1rjgbui	75	14	rev	rev	NNP
cord-289926-y1rjgbui	75	15	gene	gene	NN
cord-289926-y1rjgbui	75	16	(	(	-LRB-
cord-289926-y1rjgbui	75	17	Fig	Fig	NNP
cord-289926-y1rjgbui	75	18	.	.	.
cord-289926-y1rjgbui	75	19	2F	2F	NNP
cord-289926-y1rjgbui	75	20	)	)	-RRB-
cord-289926-y1rjgbui	75	21	.	.	.
cord-289926-y1rjgbui	76	1	The	the	DT
cord-289926-y1rjgbui	76	2	alignment	alignment	NN
cord-289926-y1rjgbui	76	3	of	of	IN
cord-289926-y1rjgbui	76	4	HDAg	hdag	NN
cord-289926-y1rjgbui	76	5	and	and	CC
cord-289926-y1rjgbui	76	6	DIPA	DIPA	NNP
cord-289926-y1rjgbui	76	7	,	,	,
cord-289926-y1rjgbui	76	8	a	a	DT
cord-289926-y1rjgbui	76	9	proposed	propose	VBN
cord-289926-y1rjgbui	76	10	cellular	cellular	JJ
cord-289926-y1rjgbui	76	11	homolog	homolog	NN
cord-289926-y1rjgbui	76	12	of	of	IN
cord-289926-y1rjgbui	76	13	HDAg	HDAg	NNPS
cord-289926-y1rjgbui	76	14	[	[	-LRB-
cord-289926-y1rjgbui	76	15	5	5	CD
cord-289926-y1rjgbui	76	16	]	]	-RRB-
cord-289926-y1rjgbui	76	17	,	,	,
cord-289926-y1rjgbui	76	18	shows	show	VBZ
cord-289926-y1rjgbui	76	19	34	34	CD
cord-289926-y1rjgbui	76	20	%	%	NN
cord-289926-y1rjgbui	76	21	identity	identity	NN
cord-289926-y1rjgbui	76	22	and	and	CC
cord-289926-y1rjgbui	76	23	57	57	CD
cord-289926-y1rjgbui	76	24	%	%	NN
cord-289926-y1rjgbui	76	25	similarity	similarity	NN
cord-289926-y1rjgbui	76	26	across	across	IN
cord-289926-y1rjgbui	76	27	the	the	DT
cord-289926-y1rjgbui	76	28	entire	entire	JJ
cord-289926-y1rjgbui	76	29	length	length	NN
cord-289926-y1rjgbui	76	30	of	of	IN
cord-289926-y1rjgbui	76	31	the	the	DT
cord-289926-y1rjgbui	76	32	protein	protein	NN
cord-289926-y1rjgbui	76	33	sequences	sequence	NNS
cord-289926-y1rjgbui	76	34	(	(	-LRB-
cord-289926-y1rjgbui	76	35	Fig	Fig	NNP
cord-289926-y1rjgbui	76	36	.	.	.
cord-289926-y1rjgbui	76	37	2D	2D	NNP
cord-289926-y1rjgbui	76	38	)	)	-RRB-
cord-289926-y1rjgbui	76	39	.	.	.
cord-289926-y1rjgbui	77	1	The	the	DT
cord-289926-y1rjgbui	77	2	similarity	similarity	NN
cord-289926-y1rjgbui	77	3	is	be	VBZ
cord-289926-y1rjgbui	77	4	distributed	distribute	VBN
cord-289926-y1rjgbui	77	5	across	across	IN
cord-289926-y1rjgbui	77	6	the	the	DT
cord-289926-y1rjgbui	77	7	entire	entire	JJ
cord-289926-y1rjgbui	77	8	sequence	sequence	NN
cord-289926-y1rjgbui	77	9	,	,	,
cord-289926-y1rjgbui	77	10	however	however	RB
cord-289926-y1rjgbui	77	11	,	,	,
cord-289926-y1rjgbui	77	12	the	the	DT
cord-289926-y1rjgbui	77	13	amino	amino	NN
cord-289926-y1rjgbui	77	14	-	-	HYPH
cord-289926-y1rjgbui	77	15	terminal	terminal	NN
cord-289926-y1rjgbui	77	16	and	and	CC
cord-289926-y1rjgbui	77	17	central	central	JJ
cord-289926-y1rjgbui	77	18	regions	region	NNS
cord-289926-y1rjgbui	77	19	show	show	VBP
cord-289926-y1rjgbui	77	20	a	a	DT
cord-289926-y1rjgbui	77	21	somewhat	somewhat	RB
cord-289926-y1rjgbui	77	22	higher	high	JJR
cord-289926-y1rjgbui	77	23	level	level	NN
cord-289926-y1rjgbui	77	24	of	of	IN
cord-289926-y1rjgbui	77	25	similarity	similarity	NN
cord-289926-y1rjgbui	77	26	(	(	-LRB-
cord-289926-y1rjgbui	77	27	Fig	Fig	NNP
cord-289926-y1rjgbui	77	28	.	.	.
cord-289926-y1rjgbui	77	29	2D	2D	NNP
cord-289926-y1rjgbui	77	30	)	)	-RRB-
cord-289926-y1rjgbui	77	31	.	.	.
cord-289926-y1rjgbui	78	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	78	2	analysis	analysis	NN
cord-289926-y1rjgbui	78	3	is	be	VBZ
cord-289926-y1rjgbui	78	4	focused	focus	VBN
cord-289926-y1rjgbui	78	5	on	on	IN
cord-289926-y1rjgbui	78	6	the	the	DT
cord-289926-y1rjgbui	78	7	central	central	JJ
cord-289926-y1rjgbui	78	8	region	region	NN
cord-289926-y1rjgbui	78	9	of	of	IN
cord-289926-y1rjgbui	78	10	HDAg	HDAg	NNS
cord-289926-y1rjgbui	78	11	which	which	WDT
cord-289926-y1rjgbui	78	12	shows	show	VBZ
cord-289926-y1rjgbui	78	13	higher	high	JJR
cord-289926-y1rjgbui	78	14	level	level	NN
cord-289926-y1rjgbui	78	15	of	of	IN
cord-289926-y1rjgbui	78	16	sequence	sequence	NN
cord-289926-y1rjgbui	78	17	similarity	similarity	NN
cord-289926-y1rjgbui	78	18	and	and	CC
cord-289926-y1rjgbui	78	19	also	also	RB
cord-289926-y1rjgbui	78	20	corresponds	correspond	VBZ
cord-289926-y1rjgbui	78	21	to	to	IN
cord-289926-y1rjgbui	78	22	the	the	DT
cord-289926-y1rjgbui	78	23	most	most	RBS
cord-289926-y1rjgbui	78	24	similar	similar	JJ
cord-289926-y1rjgbui	78	25	region	region	NN
cord-289926-y1rjgbui	78	26	of	of	IN
cord-289926-y1rjgbui	78	27	HDAg	hdag	NN
cord-289926-y1rjgbui	78	28	and	and	CC
cord-289926-y1rjgbui	78	29	SRY	sry	UH
cord-289926-y1rjgbui	78	30	.	.	.
cord-289926-y1rjgbui	79	1	This	this	DT
cord-289926-y1rjgbui	79	2	55-residue	55-residue	CD
cord-289926-y1rjgbui	79	3	long	long	JJ
cord-289926-y1rjgbui	79	4	subsequence	subsequence	NN
cord-289926-y1rjgbui	79	5	corresponds	correspond	VBZ
cord-289926-y1rjgbui	79	6	to	to	IN
cord-289926-y1rjgbui	79	7	the	the	DT
cord-289926-y1rjgbui	79	8	first	first	JJ
cord-289926-y1rjgbui	79	9	arginine	arginine	NN
cord-289926-y1rjgbui	79	10	rich	rich	JJ
cord-289926-y1rjgbui	79	11	motif	motif	NN
cord-289926-y1rjgbui	79	12	(	(	-LRB-
cord-289926-y1rjgbui	79	13	ARM	arm	NN
cord-289926-y1rjgbui	79	14	)	)	-RRB-
cord-289926-y1rjgbui	79	15	and	and	CC
cord-289926-y1rjgbui	79	16	most	most	JJS
cord-289926-y1rjgbui	79	17	of	of	IN
cord-289926-y1rjgbui	79	18	the	the	DT
cord-289926-y1rjgbui	79	19	leucine	leucine	NNP
cord-289926-y1rjgbui	79	20	zipper	zipper	NN
cord-289926-y1rjgbui	79	21	of	of	IN
cord-289926-y1rjgbui	79	22	HDAg	HDAg	NNP
cord-289926-y1rjgbui	79	23	(	(	-LRB-
cord-289926-y1rjgbui	79	24	Fig	Fig	NNP
cord-289926-y1rjgbui	79	25	.	.	.
cord-289926-y1rjgbui	79	26	2C	2C	NNP
cord-289926-y1rjgbui	79	27	)	)	-RRB-
cord-289926-y1rjgbui	79	28	.	.	.
cord-289926-y1rjgbui	80	1	The	the	DT
cord-289926-y1rjgbui	80	2	levels	level	NNS
cord-289926-y1rjgbui	80	3	of	of	IN
cord-289926-y1rjgbui	80	4	residue	residue	NN
cord-289926-y1rjgbui	80	5	identity	identity	NN
cord-289926-y1rjgbui	80	6	and	and	CC
cord-289926-y1rjgbui	80	7	similarity	similarity	NN
cord-289926-y1rjgbui	80	8	of	of	IN
cord-289926-y1rjgbui	80	9	this	this	DT
cord-289926-y1rjgbui	80	10	alignment	alignment	NN
cord-289926-y1rjgbui	80	11	are	be	VBP
cord-289926-y1rjgbui	80	12	45	45	CD
cord-289926-y1rjgbui	80	13	%	%	NN
cord-289926-y1rjgbui	80	14	and	and	CC
cord-289926-y1rjgbui	80	15	63	63	CD
cord-289926-y1rjgbui	80	16	%	%	NN
cord-289926-y1rjgbui	80	17	respectively	respectively	RB
cord-289926-y1rjgbui	80	18	.	.	.
cord-289926-y1rjgbui	81	1	As	as	IN
cord-289926-y1rjgbui	81	2	a	a	DT
cord-289926-y1rjgbui	81	3	control	control	NN
cord-289926-y1rjgbui	81	4	,	,	,
cord-289926-y1rjgbui	81	5	DIPA	DIPA	NNP
cord-289926-y1rjgbui	81	6	was	be	VBD
cord-289926-y1rjgbui	81	7	also	also	RB
cord-289926-y1rjgbui	81	8	aligned	align	VBN
cord-289926-y1rjgbui	81	9	with	with	IN
cord-289926-y1rjgbui	81	10	HIV	HIV	NNP
cord-289926-y1rjgbui	81	11	rev	rev	NNP
cord-289926-y1rjgbui	81	12	-an	-an	NNP
cord-289926-y1rjgbui	81	13	ARM	ARM	NNP
cord-289926-y1rjgbui	81	14	containing	contain	VBG
cord-289926-y1rjgbui	81	15	protein	protein	NN
cord-289926-y1rjgbui	81	16	unrelated	unrelated	JJ
cord-289926-y1rjgbui	81	17	to	to	IN
cord-289926-y1rjgbui	81	18	DIPA	DIPA	NNP
cord-289926-y1rjgbui	81	19	or	or	CC
cord-289926-y1rjgbui	81	20	HDAg	hdag	NN
cord-289926-y1rjgbui	81	21	.	.	.
cord-289926-y1rjgbui	82	1	This	this	DT
cord-289926-y1rjgbui	82	2	alignment	alignment	NN
cord-289926-y1rjgbui	82	3	shows	show	VBZ
cord-289926-y1rjgbui	82	4	45	45	CD
cord-289926-y1rjgbui	82	5	%	%	NN
cord-289926-y1rjgbui	82	6	identity	identity	NN
cord-289926-y1rjgbui	82	7	and	and	CC
cord-289926-y1rjgbui	82	8	74	74	CD
cord-289926-y1rjgbui	82	9	%	%	NN
cord-289926-y1rjgbui	82	10	similarity	similarity	NN
cord-289926-y1rjgbui	82	11	across	across	IN
cord-289926-y1rjgbui	82	12	entire	entire	JJ
cord-289926-y1rjgbui	82	13	length	length	NN
cord-289926-y1rjgbui	82	14	of	of	IN
cord-289926-y1rjgbui	82	15	89-residue	89-residue	CD
cord-289926-y1rjgbui	82	16	long	long	JJ
cord-289926-y1rjgbui	82	17	rev	rev	NNP
cord-289926-y1rjgbui	82	18	protein	protein	NN
cord-289926-y1rjgbui	82	19	(	(	-LRB-
cord-289926-y1rjgbui	82	20	Fig	Fig	NNP
cord-289926-y1rjgbui	82	21	.	.	.
cord-289926-y1rjgbui	82	22	2E	2E	NNP
cord-289926-y1rjgbui	82	23	)	)	-RRB-
cord-289926-y1rjgbui	82	24	.	.	.
cord-289926-y1rjgbui	83	1	The	the	DT
cord-289926-y1rjgbui	83	2	HMG	HMG	NNP
cord-289926-y1rjgbui	83	3	box	box	NN
cord-289926-y1rjgbui	83	4	of	of	IN
cord-289926-y1rjgbui	83	5	SRY	SRY	NNP
cord-289926-y1rjgbui	83	6	belongs	belong	VBZ
cord-289926-y1rjgbui	83	7	to	to	IN
cord-289926-y1rjgbui	83	8	the	the	DT
cord-289926-y1rjgbui	83	9	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	83	10	subgroup	subgroup	NN
cord-289926-y1rjgbui	83	11	.	.	.
cord-289926-y1rjgbui	84	1	Many	many	JJ
cord-289926-y1rjgbui	84	2	of	of	IN
cord-289926-y1rjgbui	84	3	the	the	DT
cord-289926-y1rjgbui	84	4	residues	residue	NNS
cord-289926-y1rjgbui	84	5	that	that	WDT
cord-289926-y1rjgbui	84	6	are	be	VBP
cord-289926-y1rjgbui	84	7	conserved	conserve	VBN
cord-289926-y1rjgbui	84	8	between	between	IN
cord-289926-y1rjgbui	84	9	the	the	DT
cord-289926-y1rjgbui	84	10	HMG	HMG	NNP
cord-289926-y1rjgbui	84	11	box	box	NN
cord-289926-y1rjgbui	84	12	of	of	IN
cord-289926-y1rjgbui	84	13	SRY	SRY	NNP
cord-289926-y1rjgbui	84	14	and	and	CC
cord-289926-y1rjgbui	84	15	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	84	16	are	be	VBP
cord-289926-y1rjgbui	84	17	also	also	RB
cord-289926-y1rjgbui	84	18	conserved	conserve	VBN
cord-289926-y1rjgbui	84	19	in	in	IN
cord-289926-y1rjgbui	84	20	the	the	DT
cord-289926-y1rjgbui	84	21	alignment	alignment	NN
cord-289926-y1rjgbui	84	22	between	between	IN
cord-289926-y1rjgbui	84	23	SRY	SRY	NNP
cord-289926-y1rjgbui	84	24	and	and	CC
cord-289926-y1rjgbui	84	25	the	the	DT
cord-289926-y1rjgbui	84	26	RNA	RNA	NNP
cord-289926-y1rjgbui	84	27	-	-	HYPH
cord-289926-y1rjgbui	84	28	binding	bind	VBG
cord-289926-y1rjgbui	84	29	domain	domain	NN
cord-289926-y1rjgbui	84	30	of	of	IN
cord-289926-y1rjgbui	84	31	HDAg	hdag	NN
cord-289926-y1rjgbui	84	32	(	(	-LRB-
cord-289926-y1rjgbui	84	33	data	datum	NNS
cord-289926-y1rjgbui	84	34	not	not	RB
cord-289926-y1rjgbui	84	35	shown	show	VBN
cord-289926-y1rjgbui	84	36	)	)	-RRB-
cord-289926-y1rjgbui	84	37	.	.	.
cord-289926-y1rjgbui	85	1	To	to	TO
cord-289926-y1rjgbui	85	2	identify	identify	VB
cord-289926-y1rjgbui	85	3	the	the	DT
cord-289926-y1rjgbui	85	4	residues	residue	NNS
cord-289926-y1rjgbui	85	5	that	that	WDT
cord-289926-y1rjgbui	85	6	are	be	VBP
cord-289926-y1rjgbui	85	7	conserved	conserve	VBN
cord-289926-y1rjgbui	85	8	among	among	IN
cord-289926-y1rjgbui	85	9	all	all	DT
cord-289926-y1rjgbui	85	10	sequences	sequence	NNS
cord-289926-y1rjgbui	85	11	,	,	,
cord-289926-y1rjgbui	85	12	we	-PRON-	PRP
cord-289926-y1rjgbui	85	13	aligned	align	VBD
cord-289926-y1rjgbui	85	14	the	the	DT
cord-289926-y1rjgbui	85	15	sequences	sequence	NNS
cord-289926-y1rjgbui	85	16	of	of	IN
cord-289926-y1rjgbui	85	17	SRY	SRY	NNP
cord-289926-y1rjgbui	85	18	,	,	,
cord-289926-y1rjgbui	85	19	SOX3	SOX3	NNP
cord-289926-y1rjgbui	85	20	,	,	,
cord-289926-y1rjgbui	85	21	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	85	22	and	and	CC
cord-289926-y1rjgbui	85	23	the	the	DT
cord-289926-y1rjgbui	85	24	RNA	RNA	NNP
cord-289926-y1rjgbui	85	25	-	-	HYPH
cord-289926-y1rjgbui	85	26	binding	bind	VBG
cord-289926-y1rjgbui	85	27	domain	domain	NN
cord-289926-y1rjgbui	85	28	of	of	IN
cord-289926-y1rjgbui	85	29	HDAg	hdag	NN
cord-289926-y1rjgbui	85	30	to	to	IN
cord-289926-y1rjgbui	85	31	the	the	DT
cord-289926-y1rjgbui	85	32	profile	profile	NN
cord-289926-y1rjgbui	85	33	of	of	IN
cord-289926-y1rjgbui	85	34	SRY	sry	NN
cord-289926-y1rjgbui	85	35	and	and	CC
cord-289926-y1rjgbui	85	36	HDAg	hdag	NN
cord-289926-y1rjgbui	85	37	sequences	sequence	NNS
cord-289926-y1rjgbui	85	38	(	(	-LRB-
cord-289926-y1rjgbui	85	39	Fig	Fig	NNP
cord-289926-y1rjgbui	85	40	.	.	.
cord-289926-y1rjgbui	85	41	3A	3A	NNP
cord-289926-y1rjgbui	85	42	)	)	-RRB-
cord-289926-y1rjgbui	85	43	.	.	.
cord-289926-y1rjgbui	86	1	A	a	DT
cord-289926-y1rjgbui	86	2	total	total	NN
cord-289926-y1rjgbui	86	3	of	of	IN
cord-289926-y1rjgbui	86	4	17	17	CD
cord-289926-y1rjgbui	86	5	residues	residue	NNS
cord-289926-y1rjgbui	86	6	are	be	VBP
cord-289926-y1rjgbui	86	7	identical	identical	JJ
cord-289926-y1rjgbui	86	8	between	between	IN
cord-289926-y1rjgbui	86	9	SOX3	SOX3	NNP
cord-289926-y1rjgbui	86	10	,	,	,
cord-289926-y1rjgbui	86	11	SRY	SRY	NNP
cord-289926-y1rjgbui	86	12	and	and	CC
cord-289926-y1rjgbui	86	13	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	86	14	;	;	:
cord-289926-y1rjgbui	86	15	the	the	DT
cord-289926-y1rjgbui	86	16	alignment	alignment	NN
cord-289926-y1rjgbui	86	17	of	of	IN
cord-289926-y1rjgbui	86	18	the	the	DT
cord-289926-y1rjgbui	86	19	RNA	RNA	NNP
cord-289926-y1rjgbui	86	20	-	-	HYPH
cord-289926-y1rjgbui	86	21	binding	bind	VBG
cord-289926-y1rjgbui	86	22	domain	domain	NN
cord-289926-y1rjgbui	86	23	of	of	IN
cord-289926-y1rjgbui	86	24	HDAg	hdag	NN
cord-289926-y1rjgbui	86	25	shares	share	NNS
cord-289926-y1rjgbui	86	26	10	10	CD
cord-289926-y1rjgbui	86	27	of	of	IN
cord-289926-y1rjgbui	86	28	these	these	DT
cord-289926-y1rjgbui	86	29	identities	identity	NNS
cord-289926-y1rjgbui	86	30	.	.	.
cord-289926-y1rjgbui	87	1	The	the	DT
cord-289926-y1rjgbui	87	2	identities	identity	NNS
cord-289926-y1rjgbui	87	3	are	be	VBP
cord-289926-y1rjgbui	87	4	concentrated	concentrate	VBN
cord-289926-y1rjgbui	87	5	in	in	IN
cord-289926-y1rjgbui	87	6	the	the	DT
cord-289926-y1rjgbui	87	7	first	first	JJ
cord-289926-y1rjgbui	87	8	2	2	CD
cord-289926-y1rjgbui	87	9	of	of	IN
cord-289926-y1rjgbui	87	10	the	the	DT
cord-289926-y1rjgbui	87	11	3	3	CD
cord-289926-y1rjgbui	87	12	helices	helix	NNS
cord-289926-y1rjgbui	87	13	predicted	predict	VBN
cord-289926-y1rjgbui	87	14	for	for	IN
cord-289926-y1rjgbui	87	15	the	the	DT
cord-289926-y1rjgbui	87	16	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	87	17	subgroup	subgroup	NN
cord-289926-y1rjgbui	88	1	(	(	-LRB-
cord-289926-y1rjgbui	88	2	Fig	Fig	NNP
cord-289926-y1rjgbui	88	3	.	.	.
cord-289926-y1rjgbui	88	4	3A	3A	NNP
cord-289926-y1rjgbui	88	5	,	,	,
cord-289926-y1rjgbui	88	6	3B	3B	NNP
cord-289926-y1rjgbui	88	7	)	)	-RRB-
cord-289926-y1rjgbui	88	8	.	.	.
cord-289926-y1rjgbui	89	1	HDAg	HDAg	NNP
cord-289926-y1rjgbui	89	2	,	,	,
cord-289926-y1rjgbui	89	3	SRY	sry	UH
cord-289926-y1rjgbui	89	4	and	and	CC
cord-289926-y1rjgbui	89	5	DIPA	DIPA	NNP
cord-289926-y1rjgbui	89	6	contain	contain	VBP
cord-289926-y1rjgbui	89	7	arginine	arginine	NN
cord-289926-y1rjgbui	89	8	rich	rich	JJ
cord-289926-y1rjgbui	89	9	motifs	motif	NNS
cord-289926-y1rjgbui	89	10	.	.	.
cord-289926-y1rjgbui	90	1	This	this	DT
cord-289926-y1rjgbui	90	2	compositional	compositional	JJ
cord-289926-y1rjgbui	90	3	bias	bias	NN
cord-289926-y1rjgbui	90	4	can	can	MD
cord-289926-y1rjgbui	90	5	lead	lead	VB
cord-289926-y1rjgbui	90	6	to	to	IN
cord-289926-y1rjgbui	90	7	overestimation	overestimation	NN
cord-289926-y1rjgbui	90	8	of	of	IN
cord-289926-y1rjgbui	90	9	the	the	DT
cord-289926-y1rjgbui	90	10	significance	significance	NN
cord-289926-y1rjgbui	90	11	of	of	IN
cord-289926-y1rjgbui	90	12	sequence	sequence	NN
cord-289926-y1rjgbui	90	13	similarity	similarity	NN
cord-289926-y1rjgbui	90	14	in	in	IN
cord-289926-y1rjgbui	90	15	the	the	DT
cord-289926-y1rjgbui	90	16	pairwise	pairwise	JJ
cord-289926-y1rjgbui	90	17	alignments	alignment	NNS
cord-289926-y1rjgbui	90	18	.	.	.
cord-289926-y1rjgbui	91	1	To	to	TO
cord-289926-y1rjgbui	91	2	verify	verify	VB
cord-289926-y1rjgbui	91	3	that	that	IN
cord-289926-y1rjgbui	91	4	the	the	DT
cord-289926-y1rjgbui	91	5	above	above	JJ
cord-289926-y1rjgbui	91	6	HDAg	hdag	NN
cord-289926-y1rjgbui	91	7	alignments	alignment	NNS
cord-289926-y1rjgbui	91	8	are	be	VBP
cord-289926-y1rjgbui	91	9	not	not	RB
cord-289926-y1rjgbui	91	10	due	due	JJ
cord-289926-y1rjgbui	91	11	to	to	IN
cord-289926-y1rjgbui	91	12	compositional	compositional	JJ
cord-289926-y1rjgbui	91	13	bias	bias	NN
cord-289926-y1rjgbui	91	14	of	of	IN
cord-289926-y1rjgbui	91	15	the	the	DT
cord-289926-y1rjgbui	91	16	sequences	sequence	NNS
cord-289926-y1rjgbui	91	17	,	,	,
cord-289926-y1rjgbui	91	18	a	a	DT
cord-289926-y1rjgbui	91	19	Monte	Monte	NNP
cord-289926-y1rjgbui	91	20	Carlo	Carlo	NNP
cord-289926-y1rjgbui	91	21	analysis	analysis	NN
cord-289926-y1rjgbui	91	22	was	be	VBD
cord-289926-y1rjgbui	91	23	performed	perform	VBN
cord-289926-y1rjgbui	91	24	for	for	IN
cord-289926-y1rjgbui	91	25	each	each	DT
cord-289926-y1rjgbui	91	26	of	of	IN
cord-289926-y1rjgbui	91	27	the	the	DT
cord-289926-y1rjgbui	91	28	pairwise	pairwise	JJ
cord-289926-y1rjgbui	91	29	alignments	alignment	NNS
cord-289926-y1rjgbui	91	30	.	.	.
cord-289926-y1rjgbui	92	1	One	one	CD
cord-289926-y1rjgbui	92	2	sequence	sequence	NN
cord-289926-y1rjgbui	92	3	was	be	VBD
cord-289926-y1rjgbui	92	4	shuffled	shuffle	VBN
cord-289926-y1rjgbui	92	5	and	and	CC
cord-289926-y1rjgbui	92	6	then	then	RB
cord-289926-y1rjgbui	92	7	realigned	realign	VBD
cord-289926-y1rjgbui	92	8	to	to	IN
cord-289926-y1rjgbui	92	9	the	the	DT
cord-289926-y1rjgbui	92	10	other	other	JJ
cord-289926-y1rjgbui	92	11	sequence	sequence	NN
cord-289926-y1rjgbui	92	12	under	under	IN
cord-289926-y1rjgbui	92	13	the	the	DT
cord-289926-y1rjgbui	92	14	initial	initial	JJ
cord-289926-y1rjgbui	92	15	conditions	condition	NNS
cord-289926-y1rjgbui	92	16	.	.	.
cord-289926-y1rjgbui	93	1	In	in	IN
cord-289926-y1rjgbui	93	2	the	the	DT
cord-289926-y1rjgbui	93	3	case	case	NN
cord-289926-y1rjgbui	93	4	of	of	IN
cord-289926-y1rjgbui	93	5	partial	partial	JJ
cord-289926-y1rjgbui	93	6	alignments	alignment	NNS
cord-289926-y1rjgbui	93	7	(	(	-LRB-
cord-289926-y1rjgbui	93	8	Fig	Fig	NNP
cord-289926-y1rjgbui	93	9	.	.	.
cord-289926-y1rjgbui	93	10	2A	2A	NNP
cord-289926-y1rjgbui	93	11	,	,	,
cord-289926-y1rjgbui	93	12	2C	2C	NNP
cord-289926-y1rjgbui	93	13	)	)	-RRB-
cord-289926-y1rjgbui	94	1	the	the	DT
cord-289926-y1rjgbui	94	2	greatest	great	JJS
cord-289926-y1rjgbui	94	3	local	local	JJ
cord-289926-y1rjgbui	94	4	compositional	compositional	JJ
cord-289926-y1rjgbui	94	5	bias	bias	NN
cord-289926-y1rjgbui	94	6	is	be	VBZ
cord-289926-y1rjgbui	94	7	preserved	preserve	VBN
cord-289926-y1rjgbui	94	8	,	,	,
cord-289926-y1rjgbui	94	9	which	which	WDT
cord-289926-y1rjgbui	94	10	makes	make	VBZ
cord-289926-y1rjgbui	94	11	it	-PRON-	PRP
cord-289926-y1rjgbui	94	12	a	a	DT
cord-289926-y1rjgbui	94	13	stringent	stringent	JJ
cord-289926-y1rjgbui	94	14	test	test	NN
cord-289926-y1rjgbui	94	15	.	.	.
cord-289926-y1rjgbui	95	1	This	this	DT
cord-289926-y1rjgbui	95	2	process	process	NN
cord-289926-y1rjgbui	95	3	was	be	VBD
cord-289926-y1rjgbui	95	4	repeated	repeat	VBN
cord-289926-y1rjgbui	95	5	10,000	10,000	CD
cord-289926-y1rjgbui	95	6	times	time	NNS
cord-289926-y1rjgbui	95	7	and	and	CC
cord-289926-y1rjgbui	95	8	the	the	DT
cord-289926-y1rjgbui	95	9	distribution	distribution	NN
cord-289926-y1rjgbui	95	10	of	of	IN
cord-289926-y1rjgbui	95	11	the	the	DT
cord-289926-y1rjgbui	95	12	alignment	alignment	NN
cord-289926-y1rjgbui	95	13	scores	score	NNS
cord-289926-y1rjgbui	95	14	was	be	VBD
cord-289926-y1rjgbui	95	15	examined	examine	VBN
cord-289926-y1rjgbui	95	16	.	.	.
cord-289926-y1rjgbui	96	1	Matches	match	NNS
cord-289926-y1rjgbui	96	2	merely	merely	RB
cord-289926-y1rjgbui	96	3	due	due	JJ
cord-289926-y1rjgbui	96	4	to	to	IN
cord-289926-y1rjgbui	96	5	compositional	compositional	JJ
cord-289926-y1rjgbui	96	6	effects	effect	NNS
cord-289926-y1rjgbui	96	7	alone	alone	RB
cord-289926-y1rjgbui	96	8	should	should	MD
cord-289926-y1rjgbui	96	9	occur	occur	VB
cord-289926-y1rjgbui	96	10	at	at	IN
cord-289926-y1rjgbui	96	11	equivalent	equivalent	JJ
cord-289926-y1rjgbui	96	12	frequencies	frequency	NNS
cord-289926-y1rjgbui	96	13	in	in	IN
cord-289926-y1rjgbui	96	14	the	the	DT
cord-289926-y1rjgbui	96	15	original	original	JJ
cord-289926-y1rjgbui	96	16	and	and	CC
cord-289926-y1rjgbui	96	17	scrambled	scrambled	JJ
cord-289926-y1rjgbui	96	18	alignments	alignment	NNS
cord-289926-y1rjgbui	96	19	.	.	.
cord-289926-y1rjgbui	97	1	When	when	WRB
cord-289926-y1rjgbui	97	2	the	the	DT
cord-289926-y1rjgbui	97	3	alignment	alignment	NN
cord-289926-y1rjgbui	97	4	score	score	NN
cord-289926-y1rjgbui	97	5	of	of	IN
cord-289926-y1rjgbui	97	6	the	the	DT
cord-289926-y1rjgbui	97	7	original	original	JJ
cord-289926-y1rjgbui	97	8	sequence	sequence	NN
cord-289926-y1rjgbui	97	9	is	be	VBZ
cord-289926-y1rjgbui	97	10	compared	compare	VBN
cord-289926-y1rjgbui	97	11	to	to	IN
cord-289926-y1rjgbui	97	12	the	the	DT
cord-289926-y1rjgbui	97	13	distribution	distribution	NN
cord-289926-y1rjgbui	97	14	of	of	IN
cord-289926-y1rjgbui	97	15	the	the	DT
cord-289926-y1rjgbui	97	16	scores	score	NNS
cord-289926-y1rjgbui	97	17	of	of	IN
cord-289926-y1rjgbui	97	18	the	the	DT
cord-289926-y1rjgbui	97	19	scrambled	scramble	VBN
cord-289926-y1rjgbui	97	20	sequences	sequence	NNS
cord-289926-y1rjgbui	97	21	,	,	,
cord-289926-y1rjgbui	97	22	Z	z	NN
cord-289926-y1rjgbui	97	23	scores	score	NNS
cord-289926-y1rjgbui	97	24	larger	large	JJR
cord-289926-y1rjgbui	97	25	than	than	IN
cord-289926-y1rjgbui	97	26	6.0	6.0	CD
cord-289926-y1rjgbui	97	27	indicate	indicate	VBP
cord-289926-y1rjgbui	97	28	that	that	IN
cord-289926-y1rjgbui	97	29	the	the	DT
cord-289926-y1rjgbui	97	30	original	original	JJ
cord-289926-y1rjgbui	97	31	alignment	alignment	NN
cord-289926-y1rjgbui	97	32	is	be	VBZ
cord-289926-y1rjgbui	97	33	not	not	RB
cord-289926-y1rjgbui	97	34	simply	simply	RB
cord-289926-y1rjgbui	97	35	due	due	JJ
cord-289926-y1rjgbui	97	36	to	to	IN
cord-289926-y1rjgbui	97	37	compositional	compositional	JJ
cord-289926-y1rjgbui	97	38	bias	bias	NN
cord-289926-y1rjgbui	97	39	.	.	.
cord-289926-y1rjgbui	98	1	A	a	DT
cord-289926-y1rjgbui	98	2	Z	z	NN
cord-289926-y1rjgbui	98	3	score	score	NN
cord-289926-y1rjgbui	98	4	less	less	JJR
cord-289926-y1rjgbui	98	5	than	than	IN
cord-289926-y1rjgbui	98	6	3.0	3.0	CD
cord-289926-y1rjgbui	98	7	indicates	indicate	VBZ
cord-289926-y1rjgbui	98	8	that	that	IN
cord-289926-y1rjgbui	98	9	the	the	DT
cord-289926-y1rjgbui	98	10	similarities	similarity	NNS
cord-289926-y1rjgbui	98	11	between	between	IN
cord-289926-y1rjgbui	98	12	two	two	CD
cord-289926-y1rjgbui	98	13	sequences	sequence	NNS
cord-289926-y1rjgbui	98	14	are	be	VBP
cord-289926-y1rjgbui	98	15	unlikely	unlikely	JJ
cord-289926-y1rjgbui	98	16	to	to	TO
cord-289926-y1rjgbui	98	17	be	be	VB
cord-289926-y1rjgbui	98	18	significant	significant	JJ
cord-289926-y1rjgbui	98	19	and	and	CC
cord-289926-y1rjgbui	98	20	are	be	VBP
cord-289926-y1rjgbui	98	21	probably	probably	RB
cord-289926-y1rjgbui	98	22	due	due	JJ
cord-289926-y1rjgbui	98	23	to	to	IN
cord-289926-y1rjgbui	98	24	biased	biased	JJ
cord-289926-y1rjgbui	98	25	composition	composition	NN
cord-289926-y1rjgbui	98	26	.	.	.
cord-289926-y1rjgbui	99	1	The	the	DT
cord-289926-y1rjgbui	99	2	only	only	JJ
cord-289926-y1rjgbui	99	3	potentially	potentially	RB
cord-289926-y1rjgbui	99	4	significant	significant	JJ
cord-289926-y1rjgbui	99	5	alignment	alignment	NN
cord-289926-y1rjgbui	99	6	is	be	VBZ
cord-289926-y1rjgbui	99	7	a	a	DT
cord-289926-y1rjgbui	99	8	partial	partial	JJ
cord-289926-y1rjgbui	99	9	alignment	alignment	NN
cord-289926-y1rjgbui	99	10	between	between	IN
cord-289926-y1rjgbui	99	11	the	the	DT
cord-289926-y1rjgbui	99	12	functional	functional	JJ
cord-289926-y1rjgbui	99	13	domains	domain	NNS
cord-289926-y1rjgbui	99	14	of	of	IN
cord-289926-y1rjgbui	99	15	SRY	sry	NN
cord-289926-y1rjgbui	99	16	and	and	CC
cord-289926-y1rjgbui	99	17	HDAg	HDAg	NNP
cord-289926-y1rjgbui	99	18	(	(	-LRB-
cord-289926-y1rjgbui	99	19	Fig	Fig	NNP
cord-289926-y1rjgbui	99	20	.	.	.
cord-289926-y1rjgbui	99	21	2A	2a	CD
cord-289926-y1rjgbui	99	22	)	)	-RRB-
cord-289926-y1rjgbui	99	23	(	(	-LRB-
cord-289926-y1rjgbui	99	24	Z	z	NN
cord-289926-y1rjgbui	99	25	score	score	NN
cord-289926-y1rjgbui	99	26	=	=	SYM
cord-289926-y1rjgbui	99	27	6.85	6.85	CD
cord-289926-y1rjgbui	99	28	)	)	-RRB-
cord-289926-y1rjgbui	99	29	.	.	.
cord-289926-y1rjgbui	100	1	The	the	DT
cord-289926-y1rjgbui	100	2	rest	rest	NN
cord-289926-y1rjgbui	100	3	of	of	IN
cord-289926-y1rjgbui	100	4	the	the	DT
cord-289926-y1rjgbui	100	5	alignments	alignment	NNS
cord-289926-y1rjgbui	100	6	-SRY	-sry	VBP
cord-289926-y1rjgbui	100	7	-	-	HYPH
cord-289926-y1rjgbui	100	8	HDAg	hdag	JJ
cord-289926-y1rjgbui	100	9	(	(	-LRB-
cord-289926-y1rjgbui	100	10	long	long	JJ
cord-289926-y1rjgbui	100	11	alignment	alignment	NN
cord-289926-y1rjgbui	100	12	)	)	-RRB-
cord-289926-y1rjgbui	100	13	,	,	,
cord-289926-y1rjgbui	100	14	DIPA	DIPA	NNP
cord-289926-y1rjgbui	100	15	-	-	HYPH
cord-289926-y1rjgbui	100	16	HDAg	HDAg	NNP
cord-289926-y1rjgbui	100	17	(	(	-LRB-
cord-289926-y1rjgbui	100	18	both	both	DT
cord-289926-y1rjgbui	100	19	alignments	alignment	NNS
cord-289926-y1rjgbui	100	20	)	)	-RRB-
cord-289926-y1rjgbui	100	21	,	,	,
cord-289926-y1rjgbui	100	22	HDAg	HDAg	NNP
cord-289926-y1rjgbui	100	23	-	-	HYPH
cord-289926-y1rjgbui	100	24	rev	rev	NNP
cord-289926-y1rjgbui	100	25	and	and	CC
cord-289926-y1rjgbui	100	26	DIPA	DIPA	NNP
cord-289926-y1rjgbui	100	27	-	-	HYPH
cord-289926-y1rjgbui	100	28	rev	rev	NNP
cord-289926-y1rjgbui	100	29	have	have	VBP
cord-289926-y1rjgbui	100	30	Z	z	NN
cord-289926-y1rjgbui	100	31	scores	score	NNS
cord-289926-y1rjgbui	100	32	as	as	IN
cord-289926-y1rjgbui	100	33	a	a	DT
cord-289926-y1rjgbui	100	34	function	function	NN
cord-289926-y1rjgbui	100	35	of	of	IN
cord-289926-y1rjgbui	100	36	gap	gap	NN
cord-289926-y1rjgbui	100	37	penalties	penalty	NNS
cord-289926-y1rjgbui	100	38	are	be	VBP
cord-289926-y1rjgbui	100	39	reported	report	VBN
cord-289926-y1rjgbui	100	40	here	here	RB
cord-289926-y1rjgbui	100	41	for	for	IN
cord-289926-y1rjgbui	100	42	the	the	DT
cord-289926-y1rjgbui	100	43	47	47	CD
cord-289926-y1rjgbui	100	44	residue	residue	NN
cord-289926-y1rjgbui	100	45	long	long	JJ
cord-289926-y1rjgbui	100	46	alignment	alignment	NN
cord-289926-y1rjgbui	100	47	of	of	IN
cord-289926-y1rjgbui	100	48	SRY	sry	NN
cord-289926-y1rjgbui	100	49	and	and	CC
cord-289926-y1rjgbui	100	50	HDAg	HDAg	NNP
cord-289926-y1rjgbui	100	51	(	(	-LRB-
cord-289926-y1rjgbui	100	52	Fig	Fig	NNP
cord-289926-y1rjgbui	100	53	.	.	.
cord-289926-y1rjgbui	100	54	2A	2a	CD
cord-289926-y1rjgbui	100	55	)	)	-RRB-
cord-289926-y1rjgbui	100	56	and	and	CC
cord-289926-y1rjgbui	100	57	the	the	DT
cord-289926-y1rjgbui	100	58	55	55	CD
cord-289926-y1rjgbui	100	59	residue	residue	NN
cord-289926-y1rjgbui	100	60	long	long	JJ
cord-289926-y1rjgbui	100	61	alignment	alignment	NN
cord-289926-y1rjgbui	100	62	of	of	IN
cord-289926-y1rjgbui	100	63	DIPA	DIPA	NNP
cord-289926-y1rjgbui	100	64	and	and	CC
cord-289926-y1rjgbui	100	65	HDAg	HDAg	NNP
cord-289926-y1rjgbui	100	66	(	(	-LRB-
cord-289926-y1rjgbui	100	67	Fig	Fig	NNP
cord-289926-y1rjgbui	100	68	.	.	.
cord-289926-y1rjgbui	100	69	2C	2C	NNP
cord-289926-y1rjgbui	100	70	)	)	-RRB-
cord-289926-y1rjgbui	100	71	.	.	.
cord-289926-y1rjgbui	101	1	Z	z	NN
cord-289926-y1rjgbui	101	2	scores	score	NNS
cord-289926-y1rjgbui	101	3	were	be	VBD
cord-289926-y1rjgbui	101	4	calculated	calculate	VBN
cord-289926-y1rjgbui	101	5	using	use	VBG
cord-289926-y1rjgbui	101	6	PAM	PAM	NNP
cord-289926-y1rjgbui	101	7	150	150	CD
cord-289926-y1rjgbui	101	8	comparison	comparison	NN
cord-289926-y1rjgbui	101	9	matrix	matrix	NN
cord-289926-y1rjgbui	101	10	.	.	.
cord-289926-y1rjgbui	102	1	Average	average	JJ
cord-289926-y1rjgbui	102	2	and	and	CC
cord-289926-y1rjgbui	102	3	Standard	Standard	NNP
cord-289926-y1rjgbui	102	4	Deviation	Deviation	NNP
cord-289926-y1rjgbui	102	5	values	value	NNS
cord-289926-y1rjgbui	102	6	(	(	-LRB-
cord-289926-y1rjgbui	102	7	for	for	IN
cord-289926-y1rjgbui	102	8	Z	z	NN
cord-289926-y1rjgbui	102	9	score	score	NN
cord-289926-y1rjgbui	102	10	calculation	calculation	NN
cord-289926-y1rjgbui	102	11	)	)	-RRB-
cord-289926-y1rjgbui	102	12	were	be	VBD
cord-289926-y1rjgbui	102	13	based	base	VBN
cord-289926-y1rjgbui	102	14	on	on	IN
cord-289926-y1rjgbui	102	15	10,000	10,000	CD
cord-289926-y1rjgbui	102	16	alignments	alignment	NNS
cord-289926-y1rjgbui	102	17	per	per	IN
cord-289926-y1rjgbui	102	18	sequence	sequence	NN
cord-289926-y1rjgbui	102	19	.	.	.
cord-289926-y1rjgbui	103	1	The	the	DT
cord-289926-y1rjgbui	103	2	best	good	JJS
cord-289926-y1rjgbui	103	3	Z	z	NN
cord-289926-y1rjgbui	103	4	score	score	NN
cord-289926-y1rjgbui	103	5	for	for	IN
cord-289926-y1rjgbui	103	6	each	each	DT
cord-289926-y1rjgbui	103	7	alignment	alignment	NN
cord-289926-y1rjgbui	103	8	is	be	VBZ
cord-289926-y1rjgbui	103	9	shown	show	VBN
cord-289926-y1rjgbui	103	10	in	in	IN
cord-289926-y1rjgbui	103	11	boldface	boldface	NN
cord-289926-y1rjgbui	103	12	Z	z	NN
cord-289926-y1rjgbui	103	13	score	score	NN
cord-289926-y1rjgbui	103	14	<	<	XX
cord-289926-y1rjgbui	103	15	6.0	6.0	CD
cord-289926-y1rjgbui	103	16	in	in	IN
cord-289926-y1rjgbui	103	17	the	the	DT
cord-289926-y1rjgbui	103	18	Monte	Monte	NNP
cord-289926-y1rjgbui	103	19	Carlo	Carlo	NNP
cord-289926-y1rjgbui	103	20	analysis	analysis	NN
cord-289926-y1rjgbui	103	21	(	(	-LRB-
cord-289926-y1rjgbui	103	22	see	see	VB
cord-289926-y1rjgbui	103	23	Fig	Fig	NNP
cord-289926-y1rjgbui	103	24	.	.	NNP
cord-289926-y1rjgbui	103	25	2	2	CD
cord-289926-y1rjgbui	103	26	)	)	-RRB-
cord-289926-y1rjgbui	103	27	.	.	.
cord-289926-y1rjgbui	104	1	Table	table	NN
cord-289926-y1rjgbui	104	2	1	1	CD
cord-289926-y1rjgbui	104	3	reports	report	VBZ
cord-289926-y1rjgbui	104	4	the	the	DT
cord-289926-y1rjgbui	104	5	Z	z	NN
cord-289926-y1rjgbui	104	6	scores	score	NNS
cord-289926-y1rjgbui	104	7	for	for	IN
cord-289926-y1rjgbui	104	8	the	the	DT
cord-289926-y1rjgbui	104	9	optimized	optimize	VBN
cord-289926-y1rjgbui	104	10	partial	partial	JJ
cord-289926-y1rjgbui	104	11	alignments	alignment	NNS
cord-289926-y1rjgbui	104	12	of	of	IN
cord-289926-y1rjgbui	104	13	HDAg	HDAg	NNS
cord-289926-y1rjgbui	104	14	with	with	IN
cord-289926-y1rjgbui	104	15	SRY	sry	NN
cord-289926-y1rjgbui	104	16	and	and	CC
cord-289926-y1rjgbui	104	17	HDAg	HDAg	NNS
cord-289926-y1rjgbui	104	18	with	with	IN
cord-289926-y1rjgbui	104	19	DIPA	DIPA	NNP
cord-289926-y1rjgbui	104	20	.	.	.
cord-289926-y1rjgbui	105	1	In	in	IN
cord-289926-y1rjgbui	105	2	all	all	DT
cord-289926-y1rjgbui	105	3	cases	case	NNS
cord-289926-y1rjgbui	105	4	the	the	DT
cord-289926-y1rjgbui	105	5	SRY	SRY	NNP
cord-289926-y1rjgbui	105	6	-	-	HYPH
cord-289926-y1rjgbui	105	7	HDAg	hdag	NN
cord-289926-y1rjgbui	105	8	alignment	alignment	NN
cord-289926-y1rjgbui	105	9	is	be	VBZ
cord-289926-y1rjgbui	105	10	much	much	RB
cord-289926-y1rjgbui	105	11	more	more	RBR
cord-289926-y1rjgbui	105	12	significant	significant	JJ
cord-289926-y1rjgbui	105	13	than	than	IN
cord-289926-y1rjgbui	105	14	the	the	DT
cord-289926-y1rjgbui	105	15	DIPA	DIPA	NNP
cord-289926-y1rjgbui	105	16	-	-	HYPH
cord-289926-y1rjgbui	105	17	HDAg	HDAg	NNP
cord-289926-y1rjgbui	105	18	alignment	alignment	NN
cord-289926-y1rjgbui	105	19	.	.	.
cord-289926-y1rjgbui	106	1	For	for	IN
cord-289926-y1rjgbui	106	2	the	the	DT
cord-289926-y1rjgbui	106	3	best	good	JJS
cord-289926-y1rjgbui	106	4	partial	partial	JJ
cord-289926-y1rjgbui	106	5	alignments	alignment	NNS
cord-289926-y1rjgbui	106	6	of	of	IN
cord-289926-y1rjgbui	106	7	SRY	sry	NN
cord-289926-y1rjgbui	106	8	-	-	HYPH
cord-289926-y1rjgbui	106	9	HDAg	HDAg	NNS
cord-289926-y1rjgbui	106	10	and	and	CC
cord-289926-y1rjgbui	106	11	DIPA	DIPA	NNP
cord-289926-y1rjgbui	106	12	-	-	HYPH
cord-289926-y1rjgbui	106	13	HDAg	HDAg	NNP
cord-289926-y1rjgbui	106	14	we	-PRON-	PRP
cord-289926-y1rjgbui	106	15	also	also	RB
cord-289926-y1rjgbui	106	16	determined	determine	VBD
cord-289926-y1rjgbui	106	17	the	the	DT
cord-289926-y1rjgbui	106	18	P	p	NN
cord-289926-y1rjgbui	106	19	-	-	HYPH
cord-289926-y1rjgbui	106	20	value	value	NN
cord-289926-y1rjgbui	106	21	of	of	IN
cord-289926-y1rjgbui	106	22	the	the	DT
cord-289926-y1rjgbui	106	23	alignment	alignment	NN
cord-289926-y1rjgbui	106	24	.	.	.
cord-289926-y1rjgbui	107	1	We	-PRON-	PRP
cord-289926-y1rjgbui	107	2	plotted	plot	VBD
cord-289926-y1rjgbui	107	3	the	the	DT
cord-289926-y1rjgbui	107	4	log	log	NN
cord-289926-y1rjgbui	107	5	of	of	IN
cord-289926-y1rjgbui	107	6	the	the	DT
cord-289926-y1rjgbui	107	7	observed	observed	JJ
cord-289926-y1rjgbui	107	8	frequency	frequency	NN
cord-289926-y1rjgbui	107	9	of	of	IN
cord-289926-y1rjgbui	107	10	occurrence	occurrence	NN
cord-289926-y1rjgbui	107	11	for	for	IN
cord-289926-y1rjgbui	107	12	the	the	DT
cord-289926-y1rjgbui	107	13	top	top	JJ
cord-289926-y1rjgbui	107	14	0.05	0.05	CD
cord-289926-y1rjgbui	107	15	%	%	NN
cord-289926-y1rjgbui	107	16	of	of	IN
cord-289926-y1rjgbui	107	17	1,000,000	1,000,000	CD
cord-289926-y1rjgbui	107	18	random	random	JJ
cord-289926-y1rjgbui	107	19	alignments	alignment	NNS
cord-289926-y1rjgbui	107	20	as	as	IN
cord-289926-y1rjgbui	107	21	a	a	DT
cord-289926-y1rjgbui	107	22	function	function	NN
cord-289926-y1rjgbui	107	23	of	of	IN
cord-289926-y1rjgbui	107	24	their	-PRON-	PRP$
cord-289926-y1rjgbui	107	25	alignment	alignment	NN
cord-289926-y1rjgbui	107	26	score	score	NN
cord-289926-y1rjgbui	107	27	(	(	-LRB-
cord-289926-y1rjgbui	107	28	Fig	Fig	NNP
cord-289926-y1rjgbui	107	29	.	.	.
cord-289926-y1rjgbui	107	30	4	4	CD
cord-289926-y1rjgbui	107	31	)	)	-RRB-
cord-289926-y1rjgbui	107	32	.	.	.
cord-289926-y1rjgbui	108	1	The	the	DT
cord-289926-y1rjgbui	108	2	P	p	NN
cord-289926-y1rjgbui	108	3	-	-	HYPH
cord-289926-y1rjgbui	108	4	value	value	NN
cord-289926-y1rjgbui	108	5	for	for	IN
cord-289926-y1rjgbui	108	6	the	the	DT
cord-289926-y1rjgbui	108	7	SRY	SRY	NNP
cord-289926-y1rjgbui	108	8	-	-	HYPH
cord-289926-y1rjgbui	108	9	HDAg	hdag	NN
cord-289926-y1rjgbui	108	10	partial	partial	JJ
cord-289926-y1rjgbui	108	11	alignment	alignment	NN
cord-289926-y1rjgbui	108	12	(	(	-LRB-
cord-289926-y1rjgbui	108	13	Fig	Fig	NNP
cord-289926-y1rjgbui	108	14	.	.	.
cord-289926-y1rjgbui	108	15	2A	2a	CD
cord-289926-y1rjgbui	108	16	)	)	-RRB-
cord-289926-y1rjgbui	108	17	is	be	VBZ
cord-289926-y1rjgbui	108	18	estimated	estimate	VBN
cord-289926-y1rjgbui	108	19	to	to	TO
cord-289926-y1rjgbui	108	20	be	be	VB
cord-289926-y1rjgbui	108	21	7.6	7.6	CD
cord-289926-y1rjgbui	108	22	×	×	CD
cord-289926-y1rjgbui	108	23	10	10	CD
cord-289926-y1rjgbui	108	24	−7	−7	NNP
cord-289926-y1rjgbui	108	25	.	.	.
cord-289926-y1rjgbui	109	1	The	the	DT
cord-289926-y1rjgbui	109	2	P	p	NN
cord-289926-y1rjgbui	109	3	-	-	HYPH
cord-289926-y1rjgbui	109	4	value	value	NN
cord-289926-y1rjgbui	109	5	for	for	IN
cord-289926-y1rjgbui	109	6	the	the	DT
cord-289926-y1rjgbui	109	7	DIPA	DIPA	NNP
cord-289926-y1rjgbui	109	8	-	-	HYPH
cord-289926-y1rjgbui	109	9	HDAg	HDAg	NNP
cord-289926-y1rjgbui	109	10	partial	partial	JJ
cord-289926-y1rjgbui	109	11	alignment	alignment	NN
cord-289926-y1rjgbui	109	12	(	(	-LRB-
cord-289926-y1rjgbui	109	13	Fig	Fig	NNP
cord-289926-y1rjgbui	109	14	.	.	.
cord-289926-y1rjgbui	109	15	2C	2C	NNP
cord-289926-y1rjgbui	109	16	)	)	-RRB-
cord-289926-y1rjgbui	109	17	is	be	VBZ
cord-289926-y1rjgbui	109	18	estimated	estimate	VBN
cord-289926-y1rjgbui	109	19	to	to	TO
cord-289926-y1rjgbui	109	20	be	be	VB
cord-289926-y1rjgbui	109	21	3.6	3.6	CD
cord-289926-y1rjgbui	109	22	×	×	CD
cord-289926-y1rjgbui	109	23	10	10	CD
cord-289926-y1rjgbui	109	24	−4	−4	CD
cord-289926-y1rjgbui	109	25	.	.	.
cord-289926-y1rjgbui	110	1	In	in	IN
cord-289926-y1rjgbui	110	2	this	this	DT
cord-289926-y1rjgbui	110	3	experiment	experiment	NN
cord-289926-y1rjgbui	110	4	326	326	CD
cord-289926-y1rjgbui	110	5	out	out	IN
cord-289926-y1rjgbui	110	6	of	of	IN
cord-289926-y1rjgbui	110	7	1,000,000	1,000,000	CD
cord-289926-y1rjgbui	110	8	random	random	JJ
cord-289926-y1rjgbui	110	9	alignments	alignment	NNS
cord-289926-y1rjgbui	110	10	had	have	VBD
cord-289926-y1rjgbui	110	11	better	well	JJR
cord-289926-y1rjgbui	110	12	scores	score	NNS
cord-289926-y1rjgbui	110	13	than	than	IN
cord-289926-y1rjgbui	110	14	the	the	DT
cord-289926-y1rjgbui	110	15	proposed	propose	VBN
cord-289926-y1rjgbui	110	16	DIPA	DIPA	NNP
cord-289926-y1rjgbui	110	17	-	-	HYPH
cord-289926-y1rjgbui	110	18	HDAg	hdag	NN
cord-289926-y1rjgbui	110	19	alignment	alignment	NN
cord-289926-y1rjgbui	110	20	;	;	:
cord-289926-y1rjgbui	110	21	some	some	DT
cord-289926-y1rjgbui	110	22	scores	score	NNS
cord-289926-y1rjgbui	110	23	were	be	VBD
cord-289926-y1rjgbui	110	24	significantly	significantly	RB
cord-289926-y1rjgbui	110	25	better	well	JJR
cord-289926-y1rjgbui	110	26	(	(	-LRB-
cord-289926-y1rjgbui	110	27	5	5	CD
cord-289926-y1rjgbui	110	28	alignments	alignment	NNS
cord-289926-y1rjgbui	110	29	had	have	VBD
cord-289926-y1rjgbui	110	30	scores	score	NNS
cord-289926-y1rjgbui	110	31	over	over	IN
cord-289926-y1rjgbui	110	32	50	50	CD
cord-289926-y1rjgbui	110	33	,	,	,
cord-289926-y1rjgbui	110	34	while	while	IN
cord-289926-y1rjgbui	110	35	the	the	DT
cord-289926-y1rjgbui	110	36	actual	actual	JJ
cord-289926-y1rjgbui	110	37	DIPA	DIPA	NNP
cord-289926-y1rjgbui	110	38	-	-	HYPH
cord-289926-y1rjgbui	110	39	HDAg	hdag	NN
cord-289926-y1rjgbui	110	40	alignment	alignment	NN
cord-289926-y1rjgbui	110	41	had	have	VBD
cord-289926-y1rjgbui	110	42	score	score	NN
cord-289926-y1rjgbui	110	43	39.5	39.5	CD
cord-289926-y1rjgbui	110	44	)	)	-RRB-
cord-289926-y1rjgbui	110	45	.	.	.
cord-289926-y1rjgbui	111	1	In	in	IN
cord-289926-y1rjgbui	111	2	the	the	DT
cord-289926-y1rjgbui	111	3	case	case	NN
cord-289926-y1rjgbui	111	4	of	of	IN
cord-289926-y1rjgbui	111	5	the	the	DT
cord-289926-y1rjgbui	111	6	SRY	SRY	NNP
cord-289926-y1rjgbui	111	7	-	-	HYPH
cord-289926-y1rjgbui	111	8	HDAg	hdag	NN
cord-289926-y1rjgbui	111	9	alignment	alignment	NN
cord-289926-y1rjgbui	111	10	,	,	,
cord-289926-y1rjgbui	111	11	none	none	NN
cord-289926-y1rjgbui	111	12	of	of	IN
cord-289926-y1rjgbui	111	13	the	the	DT
cord-289926-y1rjgbui	111	14	1,000,000	1,000,000	CD
cord-289926-y1rjgbui	111	15	random	random	JJ
cord-289926-y1rjgbui	111	16	alignments	alignment	NNS
cord-289926-y1rjgbui	111	17	exceeded	exceed	VBD
cord-289926-y1rjgbui	111	18	the	the	DT
cord-289926-y1rjgbui	111	19	reported	reported	JJ
cord-289926-y1rjgbui	111	20	score	score	NN
cord-289926-y1rjgbui	111	21	of	of	IN
cord-289926-y1rjgbui	111	22	47.8	47.8	CD
cord-289926-y1rjgbui	111	23	(	(	-LRB-
cord-289926-y1rjgbui	111	24	the	the	DT
cord-289926-y1rjgbui	111	25	highest	high	JJS
cord-289926-y1rjgbui	111	26	random	random	JJ
cord-289926-y1rjgbui	111	27	score	score	NN
cord-289926-y1rjgbui	111	28	was	be	VBD
cord-289926-y1rjgbui	111	29	45.9	45.9	CD
cord-289926-y1rjgbui	111	30	)	)	-RRB-
cord-289926-y1rjgbui	111	31	.	.	.
cord-289926-y1rjgbui	112	1	Testing	test	VBG
cord-289926-y1rjgbui	112	2	for	for	IN
cord-289926-y1rjgbui	112	3	frameshifting	frameshifte	VBG
cord-289926-y1rjgbui	112	4	during	during	IN
cord-289926-y1rjgbui	112	5	translation	translation	NN
cord-289926-y1rjgbui	113	1	SRY	sry	UH
cord-289926-y1rjgbui	113	2	protein	protein	NN
cord-289926-y1rjgbui	113	3	was	be	VBD
cord-289926-y1rjgbui	113	4	aligned	align	VBN
cord-289926-y1rjgbui	113	5	to	to	IN
cord-289926-y1rjgbui	113	6	the	the	DT
cord-289926-y1rjgbui	113	7	HDV	HDV	NNP
cord-289926-y1rjgbui	113	8	genome	genome	NN
cord-289926-y1rjgbui	113	9	in	in	IN
cord-289926-y1rjgbui	113	10	all	all	DT
cord-289926-y1rjgbui	113	11	6	6	CD
cord-289926-y1rjgbui	113	12	reading	reading	NN
cord-289926-y1rjgbui	113	13	frames	frame	NNS
cord-289926-y1rjgbui	113	14	.	.	.
cord-289926-y1rjgbui	114	1	As	as	IN
cord-289926-y1rjgbui	114	2	expected	expect	VBN
cord-289926-y1rjgbui	114	3	,	,	,
cord-289926-y1rjgbui	114	4	the	the	DT
cord-289926-y1rjgbui	114	5	significant	significant	JJ
cord-289926-y1rjgbui	114	6	alignment	alignment	NN
cord-289926-y1rjgbui	114	7	is	be	VBZ
cord-289926-y1rjgbui	114	8	found	find	VBN
cord-289926-y1rjgbui	114	9	on	on	IN
cord-289926-y1rjgbui	114	10	the	the	DT
cord-289926-y1rjgbui	114	11	antisense	antisense	NN
cord-289926-y1rjgbui	114	12	strand	strand	NN
cord-289926-y1rjgbui	114	13	.	.	.
cord-289926-y1rjgbui	115	1	There	there	EX
cord-289926-y1rjgbui	115	2	is	be	VBZ
cord-289926-y1rjgbui	115	3	no	no	DT
cord-289926-y1rjgbui	115	4	potential	potential	JJ
cord-289926-y1rjgbui	115	5	 	 	_SP
cord-289926-y1rjgbui	116	1	The	the	DT
cord-289926-y1rjgbui	116	2	discovery	discovery	NN
cord-289926-y1rjgbui	116	3	of	of	IN
cord-289926-y1rjgbui	116	4	sequence	sequence	NN
cord-289926-y1rjgbui	116	5	similarity	similarity	NN
cord-289926-y1rjgbui	116	6	between	between	IN
cord-289926-y1rjgbui	116	7	the	the	DT
cord-289926-y1rjgbui	116	8	RNA	RNA	NNP
cord-289926-y1rjgbui	116	9	-	-	HYPH
cord-289926-y1rjgbui	116	10	binding	bind	VBG
cord-289926-y1rjgbui	116	11	domain	domain	NN
cord-289926-y1rjgbui	116	12	of	of	IN
cord-289926-y1rjgbui	116	13	HDAg	hdag	NN
cord-289926-y1rjgbui	116	14	and	and	CC
cord-289926-y1rjgbui	116	15	the	the	DT
cord-289926-y1rjgbui	116	16	HMG	HMG	NNP
cord-289926-y1rjgbui	116	17	box	box	NN
cord-289926-y1rjgbui	116	18	of	of	IN
cord-289926-y1rjgbui	116	19	SRY	SRY	NNP
cord-289926-y1rjgbui	116	20	suggests	suggest	VBZ
cord-289926-y1rjgbui	116	21	a	a	DT
cord-289926-y1rjgbui	116	22	possible	possible	JJ
cord-289926-y1rjgbui	116	23	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	116	24	relationship	relationship	NN
cord-289926-y1rjgbui	116	25	between	between	IN
cord-289926-y1rjgbui	116	26	the	the	DT
cord-289926-y1rjgbui	116	27	HMG	HMG	NNP
cord-289926-y1rjgbui	116	28	box	box	NN
cord-289926-y1rjgbui	116	29	,	,	,
cord-289926-y1rjgbui	116	30	a	a	DT
cord-289926-y1rjgbui	116	31	DNA	dna	NN
cord-289926-y1rjgbui	116	32	-	-	HYPH
cord-289926-y1rjgbui	116	33	binding	bind	VBG
cord-289926-y1rjgbui	116	34	domain	domain	NN
cord-289926-y1rjgbui	116	35	,	,	,
cord-289926-y1rjgbui	116	36	and	and	CC
cord-289926-y1rjgbui	116	37	the	the	DT
cord-289926-y1rjgbui	116	38	RNA	RNA	NNP
cord-289926-y1rjgbui	116	39	-	-	HYPH
cord-289926-y1rjgbui	116	40	binding	bind	VBG
cord-289926-y1rjgbui	116	41	domain	domain	NN
cord-289926-y1rjgbui	116	42	of	of	IN
cord-289926-y1rjgbui	116	43	HDAg	HDAg	NNS
cord-289926-y1rjgbui	116	44	.	.	.
cord-289926-y1rjgbui	117	1	For	for	IN
cord-289926-y1rjgbui	117	2	the	the	DT
cord-289926-y1rjgbui	117	3	sake	sake	NN
cord-289926-y1rjgbui	117	4	of	of	IN
cord-289926-y1rjgbui	117	5	clarity	clarity	NN
cord-289926-y1rjgbui	117	6	we	-PRON-	PRP
cord-289926-y1rjgbui	117	7	will	will	MD
cord-289926-y1rjgbui	117	8	discuss	discuss	VB
cord-289926-y1rjgbui	117	9	the	the	DT
cord-289926-y1rjgbui	117	10	relationship	relationship	NN
cord-289926-y1rjgbui	117	11	between	between	IN
cord-289926-y1rjgbui	117	12	HDAg	HDAg	NNS
cord-289926-y1rjgbui	117	13	and	and	CC
cord-289926-y1rjgbui	117	14	SRY	sry	UH
cord-289926-y1rjgbui	117	15	,	,	,
cord-289926-y1rjgbui	117	16	but	but	CC
cord-289926-y1rjgbui	117	17	the	the	DT
cord-289926-y1rjgbui	117	18	same	same	JJ
cord-289926-y1rjgbui	117	19	argument	argument	NN
cord-289926-y1rjgbui	117	20	could	could	MD
cord-289926-y1rjgbui	117	21	apply	apply	VB
cord-289926-y1rjgbui	117	22	to	to	IN
cord-289926-y1rjgbui	117	23	SOX3	SOX3	NNP
cord-289926-y1rjgbui	117	24	and	and	CC
cord-289926-y1rjgbui	117	25	,	,	,
cord-289926-y1rjgbui	117	26	possibly	possibly	RB
cord-289926-y1rjgbui	117	27	,	,	,
cord-289926-y1rjgbui	117	28	to	to	IN
cord-289926-y1rjgbui	117	29	other	other	JJ
cord-289926-y1rjgbui	117	30	SRY	sry	NN
cord-289926-y1rjgbui	117	31	-	-	HYPH
cord-289926-y1rjgbui	117	32	related	relate	VBN
cord-289926-y1rjgbui	117	33	genes	gene	NNS
cord-289926-y1rjgbui	117	34	.	.	.
cord-289926-y1rjgbui	118	1	Statistically	statistically	RB
cord-289926-y1rjgbui	118	2	significant	significant	JJ
cord-289926-y1rjgbui	118	3	sequence	sequence	NN
cord-289926-y1rjgbui	118	4	similarities	similarity	NNS
cord-289926-y1rjgbui	118	5	are	be	VBP
cord-289926-y1rjgbui	118	6	limited	limit	VBN
cord-289926-y1rjgbui	118	7	to	to	IN
cord-289926-y1rjgbui	118	8	the	the	DT
cord-289926-y1rjgbui	118	9	functionally	functionally	RB
cord-289926-y1rjgbui	118	10	essential	essential	JJ
cord-289926-y1rjgbui	118	11	regions	region	NNS
cord-289926-y1rjgbui	118	12	of	of	IN
cord-289926-y1rjgbui	118	13	both	both	DT
cord-289926-y1rjgbui	118	14	genes	gene	NNS
cord-289926-y1rjgbui	118	15	:	:	:
cord-289926-y1rjgbui	118	16	in	in	IN
cord-289926-y1rjgbui	118	17	the	the	DT
cord-289926-y1rjgbui	118	18	SRY	SRY	NNP
cord-289926-y1rjgbui	118	19	gene	gene	NN
cord-289926-y1rjgbui	118	20	the	the	DT
cord-289926-y1rjgbui	118	21	similarity	similarity	NN
cord-289926-y1rjgbui	118	22	is	be	VBZ
cord-289926-y1rjgbui	118	23	confined	confine	VBN
cord-289926-y1rjgbui	118	24	to	to	IN
cord-289926-y1rjgbui	118	25	the	the	DT
cord-289926-y1rjgbui	118	26	HMG	HMG	NNP
cord-289926-y1rjgbui	118	27	(	(	-LRB-
cord-289926-y1rjgbui	118	28	High	High	NNP
cord-289926-y1rjgbui	118	29	Mobility	Mobility	NNP
cord-289926-y1rjgbui	118	30	Group	Group	NNP
cord-289926-y1rjgbui	118	31	)	)	-RRB-
cord-289926-y1rjgbui	118	32	box	box	NN
cord-289926-y1rjgbui	118	33	,	,	,
cord-289926-y1rjgbui	118	34	a	a	DT
cord-289926-y1rjgbui	118	35	DNA	dna	NN
cord-289926-y1rjgbui	118	36	binding	binding	NN
cord-289926-y1rjgbui	118	37	motif	motif	NN
cord-289926-y1rjgbui	118	38	found	find	VBN
cord-289926-y1rjgbui	118	39	in	in	IN
cord-289926-y1rjgbui	118	40	the	the	DT
cord-289926-y1rjgbui	118	41	HMG	HMG	NNP
cord-289926-y1rjgbui	118	42	protein	protein	NN
cord-289926-y1rjgbui	118	43	superfamily	superfamily	NN
cord-289926-y1rjgbui	118	44	[	[	-LRB-
cord-289926-y1rjgbui	118	45	24	24	CD
cord-289926-y1rjgbui	118	46	,	,	,
cord-289926-y1rjgbui	118	47	31	31	CD
cord-289926-y1rjgbui	118	48	]	]	-RRB-
cord-289926-y1rjgbui	118	49	,	,	,
cord-289926-y1rjgbui	118	50	in	in	IN
cord-289926-y1rjgbui	118	51	HDAg	hdag	FW
cord-289926-y1rjgbui	118	52	the	the	DT
cord-289926-y1rjgbui	118	53	similarity	similarity	NN
cord-289926-y1rjgbui	118	54	is	be	VBZ
cord-289926-y1rjgbui	118	55	limited	limit	VBN
cord-289926-y1rjgbui	118	56	to	to	IN
cord-289926-y1rjgbui	118	57	RNA	rna	NN
cord-289926-y1rjgbui	118	58	-	-	HYPH
cord-289926-y1rjgbui	118	59	binding	bind	VBG
cord-289926-y1rjgbui	118	60	domain	domain	NN
cord-289926-y1rjgbui	118	61	.	.	.
cord-289926-y1rjgbui	119	1	SRY	sry	UH
cord-289926-y1rjgbui	119	2	,	,	,
cord-289926-y1rjgbui	119	3	HDAg	HDAg	NNS
cord-289926-y1rjgbui	119	4	and	and	CC
cord-289926-y1rjgbui	119	5	DIPA	DIPA	NNP
cord-289926-y1rjgbui	119	6	are	be	VBP
cord-289926-y1rjgbui	119	7	bZIP	bZIP	VBG
cord-289926-y1rjgbui	119	8	proteins	protein	NNS
cord-289926-y1rjgbui	119	9	-they	-they	CD
cord-289926-y1rjgbui	120	1	thus	thus	RB
cord-289926-y1rjgbui	120	2	possess	possess	VB
cord-289926-y1rjgbui	120	3	a	a	DT
cord-289926-y1rjgbui	120	4	strong	strong	JJ
cord-289926-y1rjgbui	120	5	compositional	compositional	JJ
cord-289926-y1rjgbui	120	6	bias	bias	NN
cord-289926-y1rjgbui	120	7	,	,	,
cord-289926-y1rjgbui	120	8	which	which	WDT
cord-289926-y1rjgbui	120	9	influences	influence	VBZ
cord-289926-y1rjgbui	120	10	sequence	sequence	NN
cord-289926-y1rjgbui	120	11	analyses	analysis	NNS
cord-289926-y1rjgbui	120	12	.	.	.
cord-289926-y1rjgbui	121	1	This	this	DT
cord-289926-y1rjgbui	121	2	compositional	compositional	JJ
cord-289926-y1rjgbui	121	3	bias	bias	NN
cord-289926-y1rjgbui	121	4	may	may	MD
cord-289926-y1rjgbui	121	5	reflect	reflect	VB
cord-289926-y1rjgbui	121	6	structural	structural	JJ
cord-289926-y1rjgbui	121	7	and	and	CC
cord-289926-y1rjgbui	121	8	functional	functional	JJ
cord-289926-y1rjgbui	121	9	constrains	constrain	NNS
cord-289926-y1rjgbui	121	10	placed	place	VBN
cord-289926-y1rjgbui	121	11	upon	upon	IN
cord-289926-y1rjgbui	121	12	the	the	DT
cord-289926-y1rjgbui	121	13	RNA	RNA	NNP
cord-289926-y1rjgbui	121	14	or	or	CC
cord-289926-y1rjgbui	121	15	DNA	dna	NN
cord-289926-y1rjgbui	121	16	-	-	HYPH
cord-289926-y1rjgbui	121	17	binding	bind	VBG
cord-289926-y1rjgbui	121	18	domain	domain	NN
cord-289926-y1rjgbui	121	19	,	,	,
cord-289926-y1rjgbui	121	20	and	and	CC
cord-289926-y1rjgbui	121	21	could	could	MD
cord-289926-y1rjgbui	121	22	therefore	therefore	RB
cord-289926-y1rjgbui	121	23	suggest	suggest	VB
cord-289926-y1rjgbui	121	24	sequence	sequence	NN
cord-289926-y1rjgbui	121	25	convergence	convergence	NN
cord-289926-y1rjgbui	121	26	rather	rather	RB
cord-289926-y1rjgbui	121	27	than	than	IN
cord-289926-y1rjgbui	121	28	a	a	DT
cord-289926-y1rjgbui	121	29	common	common	JJ
cord-289926-y1rjgbui	121	30	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	121	31	origin	origin	NN
cord-289926-y1rjgbui	121	32	.	.	.
cord-289926-y1rjgbui	122	1	Thus	thus	RB
cord-289926-y1rjgbui	122	2	the	the	DT
cord-289926-y1rjgbui	122	3	high	high	JJ
cord-289926-y1rjgbui	122	4	values	value	NNS
cord-289926-y1rjgbui	122	5	for	for	IN
cord-289926-y1rjgbui	122	6	percent	percent	NN
cord-289926-y1rjgbui	122	7	identity	identity	NN
cord-289926-y1rjgbui	122	8	and	and	CC
cord-289926-y1rjgbui	122	9	similarity	similarity	NN
cord-289926-y1rjgbui	122	10	in	in	IN
cord-289926-y1rjgbui	122	11	compositionally	compositionally	RB
cord-289926-y1rjgbui	122	12	biased	biased	JJ
cord-289926-y1rjgbui	122	13	alignments	alignment	NNS
cord-289926-y1rjgbui	122	14	are	be	VBP
cord-289926-y1rjgbui	122	15	less	less	RBR
cord-289926-y1rjgbui	122	16	significant	significant	JJ
cord-289926-y1rjgbui	122	17	than	than	IN
cord-289926-y1rjgbui	122	18	in	in	IN
cord-289926-y1rjgbui	122	19	compositionally	compositionally	RB
cord-289926-y1rjgbui	122	20	unbiased	unbiased	JJ
cord-289926-y1rjgbui	122	21	sequences	sequence	NNS
cord-289926-y1rjgbui	122	22	.	.	.
cord-289926-y1rjgbui	123	1	To	to	TO
cord-289926-y1rjgbui	123	2	address	address	VB
cord-289926-y1rjgbui	123	3	the	the	DT
cord-289926-y1rjgbui	123	4	effects	effect	NNS
cord-289926-y1rjgbui	123	5	of	of	IN
cord-289926-y1rjgbui	123	6	the	the	DT
cord-289926-y1rjgbui	123	7	local	local	JJ
cord-289926-y1rjgbui	123	8	compositional	compositional	JJ
cord-289926-y1rjgbui	123	9	bias	bias	NN
cord-289926-y1rjgbui	123	10	we	-PRON-	PRP
cord-289926-y1rjgbui	123	11	used	use	VBD
cord-289926-y1rjgbui	123	12	a	a	DT
cord-289926-y1rjgbui	123	13	Monte	Monte	NNP
cord-289926-y1rjgbui	123	14	Carlo	Carlo	NNP
cord-289926-y1rjgbui	123	15	analysis	analysis	NN
cord-289926-y1rjgbui	123	16	-a	-a	NN
cord-289926-y1rjgbui	123	17	process	process	NN
cord-289926-y1rjgbui	123	18	that	that	WDT
cord-289926-y1rjgbui	123	19	compares	compare	VBZ
cord-289926-y1rjgbui	123	20	the	the	DT
cord-289926-y1rjgbui	123	21	alignment	alignment	NN
cord-289926-y1rjgbui	123	22	of	of	IN
cord-289926-y1rjgbui	123	23	interest	interest	NN
cord-289926-y1rjgbui	123	24	with	with	IN
cord-289926-y1rjgbui	123	25	alignments	alignment	NNS
cord-289926-y1rjgbui	123	26	of	of	IN
cord-289926-y1rjgbui	123	27	the	the	DT
cord-289926-y1rjgbui	123	28	randomly	randomly	RB
cord-289926-y1rjgbui	123	29	generated	generate	VBN
cord-289926-y1rjgbui	123	30	sequences	sequence	NNS
cord-289926-y1rjgbui	123	31	of	of	IN
cord-289926-y1rjgbui	123	32	the	the	DT
cord-289926-y1rjgbui	123	33	same	same	JJ
cord-289926-y1rjgbui	123	34	composition	composition	NN
cord-289926-y1rjgbui	123	35	.	.	.
cord-289926-y1rjgbui	124	1	Z	z	NN
cord-289926-y1rjgbui	124	2	scores	score	NNS
cord-289926-y1rjgbui	124	3	above	above	IN
cord-289926-y1rjgbui	124	4	6.0	6.0	CD
cord-289926-y1rjgbui	124	5	indicate	indicate	VBP
cord-289926-y1rjgbui	124	6	that	that	IN
cord-289926-y1rjgbui	124	7	the	the	DT
cord-289926-y1rjgbui	124	8	alignment	alignment	NN
cord-289926-y1rjgbui	124	9	of	of	IN
cord-289926-y1rjgbui	124	10	interest	interest	NN
cord-289926-y1rjgbui	124	11	supports	support	VBZ
cord-289926-y1rjgbui	124	12	the	the	DT
cord-289926-y1rjgbui	124	13	inference	inference	NN
cord-289926-y1rjgbui	124	14	of	of	IN
cord-289926-y1rjgbui	124	15	homology	homology	NN
cord-289926-y1rjgbui	124	16	in	in	IN
cord-289926-y1rjgbui	124	17	spite	spite	NN
cord-289926-y1rjgbui	124	18	of	of	IN
cord-289926-y1rjgbui	124	19	compositional	compositional	JJ
cord-289926-y1rjgbui	124	20	biases	bias	NNS
cord-289926-y1rjgbui	124	21	.	.	.
cord-289926-y1rjgbui	125	1	The	the	DT
cord-289926-y1rjgbui	125	2	high	high	JJ
cord-289926-y1rjgbui	125	3	Z	z	NN
cord-289926-y1rjgbui	125	4	score	score	NN
cord-289926-y1rjgbui	125	5	(	(	-LRB-
cord-289926-y1rjgbui	125	6	Z	z	NN
cord-289926-y1rjgbui	125	7	score	score	NN
cord-289926-y1rjgbui	125	8	=	=	SYM
cord-289926-y1rjgbui	125	9	6.85	6.85	CD
cord-289926-y1rjgbui	125	10	)	)	-RRB-
cord-289926-y1rjgbui	125	11	of	of	IN
cord-289926-y1rjgbui	125	12	SRY	SRY	NNP
cord-289926-y1rjgbui	125	13	-	-	HYPH
cord-289926-y1rjgbui	125	14	HDAg	hdag	NN
cord-289926-y1rjgbui	125	15	alignment	alignment	NN
cord-289926-y1rjgbui	125	16	argues	argue	VBZ
cord-289926-y1rjgbui	125	17	that	that	IN
cord-289926-y1rjgbui	125	18	the	the	DT
cord-289926-y1rjgbui	125	19	HDAg	hdag	NN
cord-289926-y1rjgbui	125	20	sequence	sequence	NN
cord-289926-y1rjgbui	125	21	is	be	VBZ
cord-289926-y1rjgbui	125	22	more	more	RBR
cord-289926-y1rjgbui	125	23	similar	similar	JJ
cord-289926-y1rjgbui	125	24	to	to	IN
cord-289926-y1rjgbui	125	25	the	the	DT
cord-289926-y1rjgbui	125	26	HMG	HMG	NNP
cord-289926-y1rjgbui	125	27	domain	domain	NN
cord-289926-y1rjgbui	125	28	of	of	IN
cord-289926-y1rjgbui	125	29	SRY	sry	NN
cord-289926-y1rjgbui	125	30	than	than	IN
cord-289926-y1rjgbui	125	31	to	to	IN
cord-289926-y1rjgbui	125	32	any	any	DT
cord-289926-y1rjgbui	125	33	randomly	randomly	RB
cord-289926-y1rjgbui	125	34	assembled	assemble	VBN
cord-289926-y1rjgbui	125	35	sequences	sequence	NNS
cord-289926-y1rjgbui	125	36	of	of	IN
cord-289926-y1rjgbui	125	37	the	the	DT
cord-289926-y1rjgbui	125	38	same	same	JJ
cord-289926-y1rjgbui	125	39	composition	composition	NN
cord-289926-y1rjgbui	125	40	.	.	.
cord-289926-y1rjgbui	126	1	Therefore	therefore	RB
cord-289926-y1rjgbui	126	2	,	,	,
cord-289926-y1rjgbui	126	3	the	the	DT
cord-289926-y1rjgbui	126	4	compositional	compositional	JJ
cord-289926-y1rjgbui	126	5	constraints	constraint	NNS
cord-289926-y1rjgbui	126	6	alone	alone	RB
cord-289926-y1rjgbui	126	7	upon	upon	IN
cord-289926-y1rjgbui	126	8	the	the	DT
cord-289926-y1rjgbui	126	9	functional	functional	JJ
cord-289926-y1rjgbui	126	10	domain	domain	NN
cord-289926-y1rjgbui	126	11	can	can	MD
cord-289926-y1rjgbui	126	12	not	not	RB
cord-289926-y1rjgbui	126	13	explain	explain	VB
cord-289926-y1rjgbui	126	14	the	the	DT
cord-289926-y1rjgbui	126	15	observed	observed	JJ
cord-289926-y1rjgbui	126	16	level	level	NN
cord-289926-y1rjgbui	126	17	of	of	IN
cord-289926-y1rjgbui	126	18	sequence	sequence	NN
cord-289926-y1rjgbui	126	19	similarity	similarity	NN
cord-289926-y1rjgbui	126	20	between	between	IN
cord-289926-y1rjgbui	126	21	HMG	HMG	NNP
cord-289926-y1rjgbui	126	22	domain	domain	NN
cord-289926-y1rjgbui	126	23	of	of	IN
cord-289926-y1rjgbui	126	24	SRY	sry	NN
cord-289926-y1rjgbui	126	25	and	and	CC
cord-289926-y1rjgbui	126	26	HDAg	hdag	NN
cord-289926-y1rjgbui	126	27	.	.	.
cord-289926-y1rjgbui	127	1	While	while	IN
cord-289926-y1rjgbui	127	2	it	-PRON-	PRP
cord-289926-y1rjgbui	127	3	is	be	VBZ
cord-289926-y1rjgbui	127	4	possible	possible	JJ
cord-289926-y1rjgbui	127	5	that	that	IN
cord-289926-y1rjgbui	127	6	the	the	DT
cord-289926-y1rjgbui	127	7	unusual	unusual	JJ
cord-289926-y1rjgbui	127	8	degree	degree	NN
cord-289926-y1rjgbui	127	9	of	of	IN
cord-289926-y1rjgbui	127	10	sequence	sequence	NN
cord-289926-y1rjgbui	127	11	similarity	similarity	NN
cord-289926-y1rjgbui	127	12	is	be	VBZ
cord-289926-y1rjgbui	127	13	due	due	JJ
cord-289926-y1rjgbui	127	14	to	to	IN
cord-289926-y1rjgbui	127	15	convergent	convergent	JJ
cord-289926-y1rjgbui	127	16	evolution	evolution	NN
cord-289926-y1rjgbui	127	17	to	to	IN
cord-289926-y1rjgbui	127	18	an	an	DT
cord-289926-y1rjgbui	127	19	energetically	energetically	RB
cord-289926-y1rjgbui	127	20	favorable	favorable	JJ
cord-289926-y1rjgbui	127	21	nucleic	nucleic	JJ
cord-289926-y1rjgbui	127	22	acid	acid	NN
cord-289926-y1rjgbui	127	23	binding	bind	VBG
cord-289926-y1rjgbui	127	24	structure	structure	NN
cord-289926-y1rjgbui	127	25	,	,	,
cord-289926-y1rjgbui	127	26	one	one	PRP
cord-289926-y1rjgbui	127	27	must	must	MD
cord-289926-y1rjgbui	127	28	keep	keep	VB
cord-289926-y1rjgbui	127	29	in	in	IN
cord-289926-y1rjgbui	127	30	mind	mind	NN
cord-289926-y1rjgbui	127	31	that	that	IN
cord-289926-y1rjgbui	127	32	there	there	EX
cord-289926-y1rjgbui	127	33	are	be	VBP
cord-289926-y1rjgbui	127	34	a	a	DT
cord-289926-y1rjgbui	127	35	nearly	nearly	RB
cord-289926-y1rjgbui	127	36	unlimited	unlimited	JJ
cord-289926-y1rjgbui	127	37	number	number	NN
cord-289926-y1rjgbui	127	38	of	of	IN
cord-289926-y1rjgbui	127	39	ways	way	NNS
cord-289926-y1rjgbui	127	40	to	to	TO
cord-289926-y1rjgbui	127	41	create	create	VB
cord-289926-y1rjgbui	127	42	a	a	DT
cord-289926-y1rjgbui	127	43	polypeptide	polypeptide	NN
cord-289926-y1rjgbui	127	44	that	that	WDT
cord-289926-y1rjgbui	127	45	will	will	MD
cord-289926-y1rjgbui	127	46	fold	fold	VB
cord-289926-y1rjgbui	127	47	into	into	IN
cord-289926-y1rjgbui	127	48	a	a	DT
cord-289926-y1rjgbui	127	49	given	give	VBN
cord-289926-y1rjgbui	127	50	three	three	CD
cord-289926-y1rjgbui	127	51	-	-	HYPH
cord-289926-y1rjgbui	127	52	dimensional	dimensional	JJ
cord-289926-y1rjgbui	127	53	shape	shape	NN
cord-289926-y1rjgbui	127	54	.	.	.
cord-289926-y1rjgbui	128	1	Therefore	therefore	RB
cord-289926-y1rjgbui	128	2	there	there	EX
cord-289926-y1rjgbui	128	3	is	be	VBZ
cord-289926-y1rjgbui	128	4	no	no	DT
cord-289926-y1rjgbui	128	5	a	a	FW
cord-289926-y1rjgbui	128	6	priori	priori	JJ
cord-289926-y1rjgbui	128	7	reason	reason	NN
cord-289926-y1rjgbui	128	8	that	that	IN
cord-289926-y1rjgbui	128	9	unrelated	unrelated	JJ
cord-289926-y1rjgbui	128	10	molecules	molecule	NNS
cord-289926-y1rjgbui	128	11	should	should	MD
cord-289926-y1rjgbui	128	12	show	show	VB
cord-289926-y1rjgbui	128	13	significant	significant	JJ
cord-289926-y1rjgbui	128	14	similarity	similarity	NN
cord-289926-y1rjgbui	128	15	or	or	CC
cord-289926-y1rjgbui	128	16	similar	similar	JJ
cord-289926-y1rjgbui	128	17	spacing	spacing	NN
cord-289926-y1rjgbui	128	18	of	of	IN
cord-289926-y1rjgbui	128	19	conserved	conserved	JJ
cord-289926-y1rjgbui	128	20	residues	residue	NNS
cord-289926-y1rjgbui	128	21	in	in	IN
cord-289926-y1rjgbui	128	22	the	the	DT
cord-289926-y1rjgbui	128	23	absence	absence	NN
cord-289926-y1rjgbui	128	24	of	of	IN
cord-289926-y1rjgbui	128	25	an	an	DT
cord-289926-y1rjgbui	128	26	ancestral	ancestral	JJ
cord-289926-y1rjgbui	128	27	relationship	relationship	NN
cord-289926-y1rjgbui	128	28	.	.	.
cord-289926-y1rjgbui	129	1	See	see	VB
cord-289926-y1rjgbui	129	2	Patterson	Patterson	NNP
cord-289926-y1rjgbui	129	3	[	[	-LRB-
cord-289926-y1rjgbui	129	4	36	36	CD
cord-289926-y1rjgbui	129	5	]	]	-RRB-
cord-289926-y1rjgbui	129	6	for	for	IN
cord-289926-y1rjgbui	129	7	a	a	DT
cord-289926-y1rjgbui	129	8	more	more	RBR
cord-289926-y1rjgbui	129	9	complete	complete	JJ
cord-289926-y1rjgbui	129	10	development	development	NN
cord-289926-y1rjgbui	129	11	of	of	IN
cord-289926-y1rjgbui	129	12	this	this	DT
cord-289926-y1rjgbui	129	13	argument	argument	NN
cord-289926-y1rjgbui	129	14	.	.	.
cord-289926-y1rjgbui	130	1	None	none	NN
cord-289926-y1rjgbui	130	2	of	of	IN
cord-289926-y1rjgbui	130	3	the	the	DT
cord-289926-y1rjgbui	130	4	alignments	alignment	NNS
cord-289926-y1rjgbui	130	5	between	between	IN
cord-289926-y1rjgbui	130	6	DIPA	DIPA	NNP
cord-289926-y1rjgbui	130	7	and	and	CC
cord-289926-y1rjgbui	130	8	HDAg	HDAg	NNPS
cord-289926-y1rjgbui	130	9	were	be	VBD
cord-289926-y1rjgbui	130	10	found	find	VBN
cord-289926-y1rjgbui	130	11	to	to	TO
cord-289926-y1rjgbui	130	12	be	be	VB
cord-289926-y1rjgbui	130	13	statistically	statistically	RB
cord-289926-y1rjgbui	130	14	significant	significant	JJ
cord-289926-y1rjgbui	130	15	based	base	VBN
cord-289926-y1rjgbui	130	16	on	on	IN
cord-289926-y1rjgbui	130	17	a	a	DT
cord-289926-y1rjgbui	130	18	Monte	Monte	NNP
cord-289926-y1rjgbui	130	19	Carlo	Carlo	NNP
cord-289926-y1rjgbui	130	20	analysis	analysis	NN
cord-289926-y1rjgbui	130	21	.	.	.
cord-289926-y1rjgbui	131	1	The	the	DT
cord-289926-y1rjgbui	131	2	best	good	JJS
cord-289926-y1rjgbui	131	3	Z	z	NN
cord-289926-y1rjgbui	131	4	score	score	NN
cord-289926-y1rjgbui	131	5	for	for	IN
cord-289926-y1rjgbui	131	6	an	an	DT
cord-289926-y1rjgbui	131	7	alignment	alignment	NN
cord-289926-y1rjgbui	131	8	is	be	VBZ
cord-289926-y1rjgbui	131	9	4.68	4.68	CD
cord-289926-y1rjgbui	131	10	;	;	:
cord-289926-y1rjgbui	131	11	it	-PRON-	PRP
cord-289926-y1rjgbui	131	12	corresponds	correspond	VBZ
cord-289926-y1rjgbui	131	13	to	to	IN
cord-289926-y1rjgbui	131	14	the	the	DT
cord-289926-y1rjgbui	131	15	partial	partial	JJ
cord-289926-y1rjgbui	131	16	alignment	alignment	NN
cord-289926-y1rjgbui	131	17	between	between	IN
cord-289926-y1rjgbui	131	18	the	the	DT
cord-289926-y1rjgbui	131	19	55-residue	55-residue	CD
cord-289926-y1rjgbui	131	20	long	long	JJ
cord-289926-y1rjgbui	131	21	central	central	JJ
cord-289926-y1rjgbui	131	22	domain	domain	NN
cord-289926-y1rjgbui	131	23	of	of	IN
cord-289926-y1rjgbui	131	24	DIPA	DIPA	NNP
cord-289926-y1rjgbui	131	25	and	and	CC
cord-289926-y1rjgbui	131	26	RNA	RNA	NNP
cord-289926-y1rjgbui	131	27	-	-	HYPH
cord-289926-y1rjgbui	131	28	binding	bind	VBG
cord-289926-y1rjgbui	131	29	domain	domain	NN
cord-289926-y1rjgbui	131	30	of	of	IN
cord-289926-y1rjgbui	131	31	HDAg	hdag	NN
cord-289926-y1rjgbui	131	32	(	(	-LRB-
cord-289926-y1rjgbui	131	33	Fig	Fig	NNP
cord-289926-y1rjgbui	131	34	.	.	.
cord-289926-y1rjgbui	131	35	2C	2C	NNP
cord-289926-y1rjgbui	131	36	)	)	-RRB-
cord-289926-y1rjgbui	131	37	.	.	.
cord-289926-y1rjgbui	132	1	The	the	DT
cord-289926-y1rjgbui	132	2	P	p	NN
cord-289926-y1rjgbui	132	3	-	-	HYPH
cord-289926-y1rjgbui	132	4	value	value	NN
cord-289926-y1rjgbui	132	5	of	of	IN
cord-289926-y1rjgbui	132	6	this	this	DT
cord-289926-y1rjgbui	132	7	alignment	alignment	NN
cord-289926-y1rjgbui	132	8	is	be	VBZ
cord-289926-y1rjgbui	132	9	estimated	estimate	VBN
cord-289926-y1rjgbui	132	10	to	to	TO
cord-289926-y1rjgbui	132	11	be	be	VB
cord-289926-y1rjgbui	132	12	3.6	3.6	CD
cord-289926-y1rjgbui	132	13	×	×	CD
cord-289926-y1rjgbui	132	14	10	10	CD
cord-289926-y1rjgbui	132	15	−4	−4	CD
cord-289926-y1rjgbui	132	16	(	(	-LRB-
cord-289926-y1rjgbui	132	17	Fig	Fig	NNP
cord-289926-y1rjgbui	132	18	.	.	.
cord-289926-y1rjgbui	132	19	4	4	CD
cord-289926-y1rjgbui	132	20	)	)	-RRB-
cord-289926-y1rjgbui	132	21	.	.	.
cord-289926-y1rjgbui	133	1	The	the	DT
cord-289926-y1rjgbui	133	2	E	e	NN
cord-289926-y1rjgbui	133	3	-	-	NN
cord-289926-y1rjgbui	133	4	value	value	NN
cord-289926-y1rjgbui	133	5	(	(	-LRB-
cord-289926-y1rjgbui	133	6	expected	expect	VBN
cord-289926-y1rjgbui	133	7	number	number	NN
cord-289926-y1rjgbui	133	8	of	of	IN
cord-289926-y1rjgbui	133	9	comparisons	comparison	NNS
cord-289926-y1rjgbui	133	10	achieving	achieve	VBG
cord-289926-y1rjgbui	133	11	an	an	DT
cord-289926-y1rjgbui	133	12	equal	equal	JJ
cord-289926-y1rjgbui	133	13	or	or	CC
cord-289926-y1rjgbui	133	14	higher	high	JJR
cord-289926-y1rjgbui	133	15	score	score	NN
cord-289926-y1rjgbui	133	16	in	in	IN
cord-289926-y1rjgbui	133	17	an	an	DT
cord-289926-y1rjgbui	133	18	equivalent	equivalent	JJ
cord-289926-y1rjgbui	133	19	database	database	NN
cord-289926-y1rjgbui	133	20	search	search	NN
cord-289926-y1rjgbui	133	21	)	)	-RRB-
cord-289926-y1rjgbui	133	22	for	for	IN
cord-289926-y1rjgbui	133	23	this	this	DT
cord-289926-y1rjgbui	133	24	alignment	alignment	NN
cord-289926-y1rjgbui	133	25	is	be	VBZ
cord-289926-y1rjgbui	133	26	25	25	CD
cord-289926-y1rjgbui	133	27	for	for	IN
cord-289926-y1rjgbui	133	28	a	a	DT
cord-289926-y1rjgbui	133	29	69,000	69,000	CD
cord-289926-y1rjgbui	133	30	sequences	sequence	NNS
cord-289926-y1rjgbui	133	31	database	database	NN
cord-289926-y1rjgbui	133	32	(	(	-LRB-
cord-289926-y1rjgbui	133	33	size	size	NN
cord-289926-y1rjgbui	133	34	of	of	IN
cord-289926-y1rjgbui	133	35	the	the	DT
cord-289926-y1rjgbui	133	36	latest	late	JJS
cord-289926-y1rjgbui	133	37	SWISS	swiss	JJ
cord-289926-y1rjgbui	133	38	-	-	HYPH
cord-289926-y1rjgbui	133	39	PROT	prot	NN
cord-289926-y1rjgbui	133	40	database	database	NN
cord-289926-y1rjgbui	133	41	,	,	,
cord-289926-y1rjgbui	133	42	release	release	VB
cord-289926-y1rjgbui	133	43	35	35	CD
cord-289926-y1rjgbui	133	44	)	)	-RRB-
cord-289926-y1rjgbui	133	45	.	.	.
cord-289926-y1rjgbui	134	1	This	this	DT
cord-289926-y1rjgbui	134	2	E	e	NN
cord-289926-y1rjgbui	134	3	-	-	NN
cord-289926-y1rjgbui	134	4	value	value	NN
cord-289926-y1rjgbui	134	5	indicates	indicate	VBZ
cord-289926-y1rjgbui	134	6	that	that	IN
cord-289926-y1rjgbui	134	7	the	the	DT
cord-289926-y1rjgbui	134	8	database	database	NN
cord-289926-y1rjgbui	134	9	search	search	NN
cord-289926-y1rjgbui	134	10	with	with	IN
cord-289926-y1rjgbui	134	11	the	the	DT
cord-289926-y1rjgbui	134	12	RNA	RNA	NNP
cord-289926-y1rjgbui	134	13	-	-	HYPH
cord-289926-y1rjgbui	134	14	binding	bind	VBG
cord-289926-y1rjgbui	134	15	domain	domain	NN
cord-289926-y1rjgbui	134	16	of	of	IN
cord-289926-y1rjgbui	134	17	HDAg	HDAg	NNS
cord-289926-y1rjgbui	134	18	will	will	MD
cord-289926-y1rjgbui	134	19	identify	identify	VB
cord-289926-y1rjgbui	134	20	approximately	approximately	RB
cord-289926-y1rjgbui	134	21	25	25	CD
cord-289926-y1rjgbui	134	22	unrelated	unrelated	JJ
cord-289926-y1rjgbui	134	23	proteins	protein	NNS
cord-289926-y1rjgbui	134	24	that	that	WDT
cord-289926-y1rjgbui	134	25	will	will	MD
cord-289926-y1rjgbui	134	26	have	have	VB
cord-289926-y1rjgbui	134	27	alignment	alignment	NN
cord-289926-y1rjgbui	134	28	scores	score	NNS
cord-289926-y1rjgbui	134	29	as	as	IN
cord-289926-y1rjgbui	134	30	good	good	JJ
cord-289926-y1rjgbui	134	31	or	or	CC
cord-289926-y1rjgbui	134	32	better	well	JJR
cord-289926-y1rjgbui	134	33	than	than	IN
cord-289926-y1rjgbui	134	34	DIPA	DIPA	NNP
cord-289926-y1rjgbui	134	35	alignment	alignment	NN
cord-289926-y1rjgbui	134	36	.	.	.
cord-289926-y1rjgbui	135	1	In	in	IN
cord-289926-y1rjgbui	135	2	fact	fact	NN
cord-289926-y1rjgbui	135	3	,	,	,
cord-289926-y1rjgbui	135	4	the	the	DT
cord-289926-y1rjgbui	135	5	alignment	alignment	NN
cord-289926-y1rjgbui	135	6	of	of	IN
cord-289926-y1rjgbui	135	7	DIPA	DIPA	NNP
cord-289926-y1rjgbui	135	8	and	and	CC
cord-289926-y1rjgbui	135	9	the	the	DT
cord-289926-y1rjgbui	135	10	HIV	HIV	NNP
cord-289926-y1rjgbui	135	11	rev	rev	NNP
cord-289926-y1rjgbui	135	12	protein	protein	NN
cord-289926-y1rjgbui	135	13	(	(	-LRB-
cord-289926-y1rjgbui	135	14	Fig	Fig	NNP
cord-289926-y1rjgbui	135	15	.	.	.
cord-289926-y1rjgbui	135	16	2E	2E	NNP
cord-289926-y1rjgbui	135	17	)	)	-RRB-
cord-289926-y1rjgbui	135	18	,	,	,
cord-289926-y1rjgbui	135	19	which	which	WDT
cord-289926-y1rjgbui	135	20	is	be	VBZ
cord-289926-y1rjgbui	135	21	presumably	presumably	RB
cord-289926-y1rjgbui	135	22	unrelated	unrelated	JJ
cord-289926-y1rjgbui	135	23	to	to	IN
cord-289926-y1rjgbui	135	24	DIPA	DIPA	NNP
cord-289926-y1rjgbui	135	25	,	,	,
cord-289926-y1rjgbui	135	26	has	have	VBZ
cord-289926-y1rjgbui	135	27	a	a	DT
cord-289926-y1rjgbui	135	28	similar	similar	JJ
cord-289926-y1rjgbui	135	29	Z	z	NN
cord-289926-y1rjgbui	135	30	score	score	NN
cord-289926-y1rjgbui	135	31	=	=	SYM
cord-289926-y1rjgbui	135	32	4.7	4.7	CD
cord-289926-y1rjgbui	135	33	.	.	.
cord-289926-y1rjgbui	136	1	Alignments	alignment	NNS
cord-289926-y1rjgbui	136	2	of	of	IN
cord-289926-y1rjgbui	136	3	other	other	JJ
cord-289926-y1rjgbui	136	4	DIPA	DIPA	NNP
cord-289926-y1rjgbui	136	5	regions	region	NNS
cord-289926-y1rjgbui	136	6	or	or	CC
cord-289926-y1rjgbui	136	7	of	of	IN
cord-289926-y1rjgbui	136	8	the	the	DT
cord-289926-y1rjgbui	136	9	entire	entire	JJ
cord-289926-y1rjgbui	136	10	DIPA	DIPA	NNP
cord-289926-y1rjgbui	136	11	protein	protein	NN
cord-289926-y1rjgbui	136	12	with	with	IN
cord-289926-y1rjgbui	136	13	SRY	SRY	NNP
cord-289926-y1rjgbui	136	14	produced	produce	VBD
cord-289926-y1rjgbui	136	15	even	even	RB
cord-289926-y1rjgbui	136	16	less	less	RBR
cord-289926-y1rjgbui	136	17	significant	significant	JJ
cord-289926-y1rjgbui	136	18	Z	z	NN
cord-289926-y1rjgbui	136	19	scores	score	NNS
cord-289926-y1rjgbui	136	20	(	(	-LRB-
cord-289926-y1rjgbui	136	21	Fig	Fig	NNP
cord-289926-y1rjgbui	136	22	.	.	.
cord-289926-y1rjgbui	136	23	2D	2D	NNP
cord-289926-y1rjgbui	136	24	)	)	-RRB-
cord-289926-y1rjgbui	136	25	.	.	.
cord-289926-y1rjgbui	137	1	Statistical	statistical	JJ
cord-289926-y1rjgbui	137	2	analysis	analysis	NN
cord-289926-y1rjgbui	137	3	recently	recently	RB
cord-289926-y1rjgbui	137	4	performed	perform	VBN
cord-289926-y1rjgbui	137	5	by	by	IN
cord-289926-y1rjgbui	137	6	Long	Long	NNP
cord-289926-y1rjgbui	137	7	et	et	NNP
cord-289926-y1rjgbui	137	8	al	al	NNP
cord-289926-y1rjgbui	137	9	.	.	.
cord-289926-y1rjgbui	138	1	considered	consider	VBN
cord-289926-y1rjgbui	138	2	the	the	DT
cord-289926-y1rjgbui	138	3	entire	entire	JJ
cord-289926-y1rjgbui	138	4	DIPA	DIPA	NNP
cord-289926-y1rjgbui	138	5	sequence	sequence	NN
cord-289926-y1rjgbui	138	6	;	;	:
cord-289926-y1rjgbui	138	7	it	-PRON-	PRP
cord-289926-y1rjgbui	138	8	also	also	RB
cord-289926-y1rjgbui	138	9	indicated	indicate	VBD
cord-289926-y1rjgbui	138	10	that	that	DT
cord-289926-y1rjgbui	138	11	sequence	sequence	NN
cord-289926-y1rjgbui	138	12	similarity	similarity	NN
cord-289926-y1rjgbui	138	13	between	between	IN
cord-289926-y1rjgbui	138	14	HDAg	HDAg	NNS
cord-289926-y1rjgbui	138	15	and	and	CC
cord-289926-y1rjgbui	138	16	DIPA	DIPA	NNP
cord-289926-y1rjgbui	138	17	is	be	VBZ
cord-289926-y1rjgbui	138	18	not	not	RB
cord-289926-y1rjgbui	138	19	significant	significant	JJ
cord-289926-y1rjgbui	138	20	[	[	-LRB-
cord-289926-y1rjgbui	138	21	34	34	CD
cord-289926-y1rjgbui	138	22	]	]	-RRB-
cord-289926-y1rjgbui	138	23	.	.	.
cord-289926-y1rjgbui	139	1	The	the	DT
cord-289926-y1rjgbui	139	2	P	p	NN
cord-289926-y1rjgbui	139	3	-	-	HYPH
cord-289926-y1rjgbui	139	4	value	value	NN
cord-289926-y1rjgbui	139	5	of	of	IN
cord-289926-y1rjgbui	139	6	the	the	DT
cord-289926-y1rjgbui	139	7	alignment	alignment	NN
cord-289926-y1rjgbui	139	8	of	of	IN
cord-289926-y1rjgbui	139	9	the	the	DT
cord-289926-y1rjgbui	139	10	entire	entire	JJ
cord-289926-y1rjgbui	139	11	DIPA	DIPA	NNP
cord-289926-y1rjgbui	139	12	and	and	CC
cord-289926-y1rjgbui	139	13	HDAg	hdag	NN
cord-289926-y1rjgbui	139	14	proteins	protein	NNS
cord-289926-y1rjgbui	139	15	is	be	VBZ
cord-289926-y1rjgbui	139	16	2	2	CD
cord-289926-y1rjgbui	139	17	×	×	NN
cord-289926-y1rjgbui	139	18	10	10	CD
cord-289926-y1rjgbui	139	19	−3	−3	NN
cord-289926-y1rjgbui	139	20	as	as	IN
cord-289926-y1rjgbui	139	21	reported	report	VBN
cord-289926-y1rjgbui	139	22	by	by	IN
cord-289926-y1rjgbui	139	23	Brazas	Brazas	NNP
cord-289926-y1rjgbui	139	24	and	and	CC
cord-289926-y1rjgbui	139	25	Ganem	Ganem	NNP
cord-289926-y1rjgbui	139	26	in	in	IN
cord-289926-y1rjgbui	139	27	their	-PRON-	PRP$
cord-289926-y1rjgbui	139	28	reply	reply	NN
cord-289926-y1rjgbui	139	29	to	to	IN
cord-289926-y1rjgbui	139	30	Long	Long	NNP
cord-289926-y1rjgbui	139	31	et	et	NNP
cord-289926-y1rjgbui	139	32	al	al	NNP
cord-289926-y1rjgbui	139	33	.	.	.
cord-289926-y1rjgbui	140	1	[	[	-LRB-
cord-289926-y1rjgbui	140	2	4	4	CD
cord-289926-y1rjgbui	140	3	]	]	-RRB-
cord-289926-y1rjgbui	140	4	.	.	.
cord-289926-y1rjgbui	141	1	This	this	DT
cord-289926-y1rjgbui	141	2	value	value	NN
cord-289926-y1rjgbui	141	3	is	be	VBZ
cord-289926-y1rjgbui	141	4	less	less	RBR
cord-289926-y1rjgbui	141	5	significant	significant	JJ
cord-289926-y1rjgbui	141	6	than	than	IN
cord-289926-y1rjgbui	141	7	the	the	DT
cord-289926-y1rjgbui	141	8	Pvalue	Pvalue	NNP
cord-289926-y1rjgbui	141	9	for	for	IN
cord-289926-y1rjgbui	141	10	the	the	DT
cord-289926-y1rjgbui	141	11	DIPA	DIPA	NNP
cord-289926-y1rjgbui	141	12	fragment	fragment	NN
cord-289926-y1rjgbui	141	13	reported	report	VBD
cord-289926-y1rjgbui	141	14	above	above	RB
cord-289926-y1rjgbui	141	15	.	.	.
cord-289926-y1rjgbui	142	1	The	the	DT
cord-289926-y1rjgbui	142	2	presence	presence	NN
cord-289926-y1rjgbui	142	3	of	of	IN
cord-289926-y1rjgbui	142	4	the	the	DT
cord-289926-y1rjgbui	142	5	bZIP	bzip	CD
cord-289926-y1rjgbui	142	6	domains	domain	NNS
cord-289926-y1rjgbui	142	7	,	,	,
cord-289926-y1rjgbui	142	8	which	which	WDT
cord-289926-y1rjgbui	142	9	made	make	VBD
cord-289926-y1rjgbui	142	10	detection	detection	NN
cord-289926-y1rjgbui	142	11	of	of	IN
cord-289926-y1rjgbui	142	12	functional	functional	JJ
cord-289926-y1rjgbui	142	13	interaction	interaction	NN
cord-289926-y1rjgbui	142	14	between	between	IN
cord-289926-y1rjgbui	142	15	DIPA	DIPA	NNP
cord-289926-y1rjgbui	142	16	and	and	CC
cord-289926-y1rjgbui	142	17	HDAg	hdag	NN
cord-289926-y1rjgbui	142	18	possible	possible	JJ
cord-289926-y1rjgbui	142	19	[	[	-LRB-
cord-289926-y1rjgbui	142	20	5	5	CD
cord-289926-y1rjgbui	142	21	]	]	-RRB-
cord-289926-y1rjgbui	142	22	,	,	,
cord-289926-y1rjgbui	142	23	should	should	MD
cord-289926-y1rjgbui	142	24	also	also	RB
cord-289926-y1rjgbui	142	25	serve	serve	VB
cord-289926-y1rjgbui	142	26	as	as	IN
cord-289926-y1rjgbui	142	27	a	a	DT
cord-289926-y1rjgbui	142	28	warning	warning	NN
cord-289926-y1rjgbui	142	29	during	during	IN
cord-289926-y1rjgbui	142	30	sequence	sequence	NN
cord-289926-y1rjgbui	142	31	analysis	analysis	NN
cord-289926-y1rjgbui	142	32	:	:	:
cord-289926-y1rjgbui	142	33	bZIP	bzip	CD
cord-289926-y1rjgbui	142	34	domains	domain	NNS
cord-289926-y1rjgbui	142	35	are	be	VBP
cord-289926-y1rjgbui	142	36	compositionally	compositionally	RB
cord-289926-y1rjgbui	142	37	biased	biased	JJ
cord-289926-y1rjgbui	142	38	and	and	CC
cord-289926-y1rjgbui	142	39	this	this	DT
cord-289926-y1rjgbui	142	40	bias	bias	NN
cord-289926-y1rjgbui	142	41	makes	make	VBZ
cord-289926-y1rjgbui	142	42	it	-PRON-	PRP
cord-289926-y1rjgbui	142	43	more	more	RBR
cord-289926-y1rjgbui	142	44	likely	likely	JJ
cord-289926-y1rjgbui	142	45	to	to	TO
cord-289926-y1rjgbui	142	46	obtain	obtain	VB
cord-289926-y1rjgbui	142	47	high	high	JJ
cord-289926-y1rjgbui	142	48	alignment	alignment	NN
cord-289926-y1rjgbui	142	49	scores	score	NNS
cord-289926-y1rjgbui	142	50	with	with	IN
cord-289926-y1rjgbui	142	51	unrelated	unrelated	JJ
cord-289926-y1rjgbui	142	52	proteins	protein	NNS
cord-289926-y1rjgbui	142	53	.	.	.
cord-289926-y1rjgbui	143	1	The	the	DT
cord-289926-y1rjgbui	143	2	Monte	Monte	NNP
cord-289926-y1rjgbui	143	3	Carlo	Carlo	NNP
cord-289926-y1rjgbui	143	4	analysis	analysis	NN
cord-289926-y1rjgbui	143	5	of	of	IN
cord-289926-y1rjgbui	143	6	the	the	DT
cord-289926-y1rjgbui	143	7	partial	partial	JJ
cord-289926-y1rjgbui	143	8	alignment	alignment	NN
cord-289926-y1rjgbui	143	9	of	of	IN
cord-289926-y1rjgbui	143	10	the	the	DT
cord-289926-y1rjgbui	143	11	HMG	HMG	NNP
cord-289926-y1rjgbui	143	12	domain	domain	NN
cord-289926-y1rjgbui	143	13	of	of	IN
cord-289926-y1rjgbui	143	14	SRY	SRY	NNP
cord-289926-y1rjgbui	143	15	and	and	CC
cord-289926-y1rjgbui	143	16	the	the	DT
cord-289926-y1rjgbui	143	17	RNA	RNA	NNP
cord-289926-y1rjgbui	143	18	-	-	HYPH
cord-289926-y1rjgbui	143	19	binding	bind	VBG
cord-289926-y1rjgbui	143	20	domain	domain	NN
cord-289926-y1rjgbui	143	21	of	of	IN
cord-289926-y1rjgbui	143	22	HDAg	hdag	NN
cord-289926-y1rjgbui	143	23	produces	produce	VBZ
cord-289926-y1rjgbui	143	24	a	a	DT
cord-289926-y1rjgbui	143	25	Z	z	NN
cord-289926-y1rjgbui	143	26	score	score	NN
cord-289926-y1rjgbui	143	27	of	of	IN
cord-289926-y1rjgbui	143	28	6.85	6.85	CD
cord-289926-y1rjgbui	143	29	-a	-a	:
cord-289926-y1rjgbui	143	30	statistically	statistically	RB
cord-289926-y1rjgbui	143	31	significant	significant	JJ
cord-289926-y1rjgbui	143	32	value	value	NN
cord-289926-y1rjgbui	143	33	(	(	-LRB-
cord-289926-y1rjgbui	143	34	Fig	Fig	NNP
cord-289926-y1rjgbui	143	35	.	.	.
cord-289926-y1rjgbui	143	36	2A	2a	CD
cord-289926-y1rjgbui	143	37	)	)	-RRB-
cord-289926-y1rjgbui	143	38	.	.	.
cord-289926-y1rjgbui	144	1	The	the	DT
cord-289926-y1rjgbui	144	2	P	p	NN
cord-289926-y1rjgbui	144	3	-	-	HYPH
cord-289926-y1rjgbui	144	4	value	value	NN
cord-289926-y1rjgbui	144	5	for	for	IN
cord-289926-y1rjgbui	144	6	this	this	DT
cord-289926-y1rjgbui	144	7	alignment	alignment	NN
cord-289926-y1rjgbui	144	8	is	be	VBZ
cord-289926-y1rjgbui	144	9	7.6	7.6	CD
cord-289926-y1rjgbui	144	10	×	×	NN
cord-289926-y1rjgbui	144	11	10	10	CD
cord-289926-y1rjgbui	144	12	−7	−7	NNP
cord-289926-y1rjgbui	144	13	,	,	,
cord-289926-y1rjgbui	144	14	indicating	indicate	VBG
cord-289926-y1rjgbui	144	15	that	that	IN
cord-289926-y1rjgbui	144	16	an	an	DT
cord-289926-y1rjgbui	144	17	alignment	alignment	NN
cord-289926-y1rjgbui	144	18	this	this	DT
cord-289926-y1rjgbui	144	19	good	good	NN
cord-289926-y1rjgbui	144	20	is	be	VBZ
cord-289926-y1rjgbui	144	21	unlikely	unlikely	JJ
cord-289926-y1rjgbui	144	22	to	to	TO
cord-289926-y1rjgbui	144	23	arise	arise	VB
cord-289926-y1rjgbui	144	24	by	by	IN
cord-289926-y1rjgbui	144	25	chance	chance	NN
cord-289926-y1rjgbui	144	26	,	,	,
cord-289926-y1rjgbui	144	27	even	even	RB
cord-289926-y1rjgbui	144	28	when	when	WRB
cord-289926-y1rjgbui	144	29	analysis	analysis	NN
cord-289926-y1rjgbui	144	30	is	be	VBZ
cord-289926-y1rjgbui	144	31	limited	limit	VBN
cord-289926-y1rjgbui	144	32	to	to	IN
cord-289926-y1rjgbui	144	33	the	the	DT
cord-289926-y1rjgbui	144	34	compositionally	compositionally	RB
cord-289926-y1rjgbui	144	35	biased	biased	JJ
cord-289926-y1rjgbui	144	36	HMG	HMG	NNP
cord-289926-y1rjgbui	144	37	box	box	NN
cord-289926-y1rjgbui	144	38	region	region	NN
cord-289926-y1rjgbui	144	39	.	.	.
cord-289926-y1rjgbui	145	1	E	e	NN
cord-289926-y1rjgbui	145	2	-	-	NN
cord-289926-y1rjgbui	145	3	value	value	NN
cord-289926-y1rjgbui	145	4	of	of	IN
cord-289926-y1rjgbui	145	5	this	this	DT
cord-289926-y1rjgbui	145	6	alignment	alignment	NN
cord-289926-y1rjgbui	145	7	is	be	VBZ
cord-289926-y1rjgbui	145	8	0.05	0.05	CD
cord-289926-y1rjgbui	145	9	for	for	IN
cord-289926-y1rjgbui	145	10	the	the	DT
cord-289926-y1rjgbui	145	11	latest	late	JJS
cord-289926-y1rjgbui	145	12	release	release	NN
cord-289926-y1rjgbui	145	13	of	of	IN
cord-289926-y1rjgbui	145	14	SWISS	SWISS	NNP
cord-289926-y1rjgbui	145	15	-	-	HYPH
cord-289926-y1rjgbui	145	16	PROT	PROT	NNP
cord-289926-y1rjgbui	145	17	(	(	-LRB-
cord-289926-y1rjgbui	145	18	release35	release35	NNP
cord-289926-y1rjgbui	145	19	)	)	-RRB-
cord-289926-y1rjgbui	145	20	;	;	:
cord-289926-y1rjgbui	145	21	thus	thus	RB
cord-289926-y1rjgbui	145	22	an	an	DT
cord-289926-y1rjgbui	145	23	unrelated	unrelated	JJ
cord-289926-y1rjgbui	145	24	protein	protein	NN
cord-289926-y1rjgbui	145	25	with	with	IN
cord-289926-y1rjgbui	145	26	an	an	DT
cord-289926-y1rjgbui	145	27	alignment	alignment	NN
cord-289926-y1rjgbui	145	28	score	score	NN
cord-289926-y1rjgbui	145	29	as	as	RB
cord-289926-y1rjgbui	145	30	good	good	JJ
cord-289926-y1rjgbui	145	31	or	or	CC
cord-289926-y1rjgbui	145	32	better	well	JJR
cord-289926-y1rjgbui	145	33	as	as	IN
cord-289926-y1rjgbui	145	34	that	that	DT
cord-289926-y1rjgbui	145	35	of	of	IN
cord-289926-y1rjgbui	145	36	the	the	DT
cord-289926-y1rjgbui	145	37	HMG	HMG	NNP
cord-289926-y1rjgbui	145	38	domain	domain	NN
cord-289926-y1rjgbui	145	39	of	of	IN
cord-289926-y1rjgbui	145	40	SRY	SRY	NNP
cord-289926-y1rjgbui	145	41	and	and	CC
cord-289926-y1rjgbui	145	42	the	the	DT
cord-289926-y1rjgbui	145	43	RNA	RNA	NNP
cord-289926-y1rjgbui	145	44	-	-	HYPH
cord-289926-y1rjgbui	145	45	binding	bind	VBG
cord-289926-y1rjgbui	145	46	domain	domain	NN
cord-289926-y1rjgbui	145	47	of	of	IN
cord-289926-y1rjgbui	145	48	HDAg	HDAg	NNS
cord-289926-y1rjgbui	145	49	will	will	MD
cord-289926-y1rjgbui	145	50	be	be	VB
cord-289926-y1rjgbui	145	51	expected	expect	VBN
cord-289926-y1rjgbui	145	52	to	to	TO
cord-289926-y1rjgbui	145	53	be	be	VB
cord-289926-y1rjgbui	145	54	found	find	VBN
cord-289926-y1rjgbui	145	55	only	only	RB
cord-289926-y1rjgbui	145	56	after	after	IN
cord-289926-y1rjgbui	145	57	20-fold	20-fold	CD
cord-289926-y1rjgbui	145	58	increase	increase	NN
cord-289926-y1rjgbui	145	59	in	in	IN
cord-289926-y1rjgbui	145	60	the	the	DT
cord-289926-y1rjgbui	145	61	size	size	NN
cord-289926-y1rjgbui	145	62	of	of	IN
cord-289926-y1rjgbui	145	63	the	the	DT
cord-289926-y1rjgbui	145	64	current	current	JJ
cord-289926-y1rjgbui	145	65	database	database	NN
cord-289926-y1rjgbui	145	66	.	.	.
cord-289926-y1rjgbui	146	1	A	a	DT
cord-289926-y1rjgbui	146	2	cellular	cellular	JJ
cord-289926-y1rjgbui	146	3	gene	gene	NN
cord-289926-y1rjgbui	146	4	and	and	CC
cord-289926-y1rjgbui	146	5	its	-PRON-	PRP$
cord-289926-y1rjgbui	146	6	RNA	RNA	NNP
cord-289926-y1rjgbui	146	7	viral	viral	JJ
cord-289926-y1rjgbui	146	8	cognate	cognate	NN
cord-289926-y1rjgbui	146	9	diverge	diverge	VBP
cord-289926-y1rjgbui	146	10	more	more	RBR
cord-289926-y1rjgbui	146	11	rapidly	rapidly	RB
cord-289926-y1rjgbui	146	12	than	than	IN
cord-289926-y1rjgbui	146	13	would	would	MD
cord-289926-y1rjgbui	146	14	be	be	VB
cord-289926-y1rjgbui	146	15	expected	expect	VBN
cord-289926-y1rjgbui	146	16	for	for	IN
cord-289926-y1rjgbui	146	17	two	two	CD
cord-289926-y1rjgbui	146	18	cellular	cellular	JJ
cord-289926-y1rjgbui	146	19	genes	gene	NNS
cord-289926-y1rjgbui	146	20	due	due	JJ
cord-289926-y1rjgbui	146	21	to	to	IN
cord-289926-y1rjgbui	146	22	the	the	DT
cord-289926-y1rjgbui	146	23	low	low	JJ
cord-289926-y1rjgbui	146	24	fidelity	fidelity	NN
cord-289926-y1rjgbui	146	25	of	of	IN
cord-289926-y1rjgbui	146	26	RNA	RNA	NNP
cord-289926-y1rjgbui	146	27	replication	replication	NN
cord-289926-y1rjgbui	146	28	.	.	.
cord-289926-y1rjgbui	147	1	Because	because	IN
cord-289926-y1rjgbui	147	2	of	of	IN
cord-289926-y1rjgbui	147	3	this	this	DT
cord-289926-y1rjgbui	147	4	rapid	rapid	JJ
cord-289926-y1rjgbui	147	5	divergence	divergence	NN
cord-289926-y1rjgbui	147	6	,	,	,
cord-289926-y1rjgbui	147	7	one	one	PRP
cord-289926-y1rjgbui	147	8	would	would	MD
cord-289926-y1rjgbui	147	9	expect	expect	VB
cord-289926-y1rjgbui	147	10	the	the	DT
cord-289926-y1rjgbui	147	11	similarity	similarity	NN
cord-289926-y1rjgbui	147	12	between	between	IN
cord-289926-y1rjgbui	147	13	a	a	DT
cord-289926-y1rjgbui	147	14	DNAencoded	dnaencoded	JJ
cord-289926-y1rjgbui	147	15	gene	gene	NN
cord-289926-y1rjgbui	147	16	and	and	CC
cord-289926-y1rjgbui	147	17	its	-PRON-	PRP$
cord-289926-y1rjgbui	147	18	RNA	RNA	NNP
cord-289926-y1rjgbui	147	19	-	-	HYPH
cord-289926-y1rjgbui	147	20	encoded	encode	VBN
cord-289926-y1rjgbui	147	21	counterpart	counterpart	NN
cord-289926-y1rjgbui	147	22	to	to	TO
cord-289926-y1rjgbui	147	23	correspond	correspond	VB
cord-289926-y1rjgbui	147	24	to	to	IN
cord-289926-y1rjgbui	147	25	the	the	DT
cord-289926-y1rjgbui	147	26	regions	region	NNS
cord-289926-y1rjgbui	147	27	that	that	WDT
cord-289926-y1rjgbui	147	28	are	be	VBP
cord-289926-y1rjgbui	147	29	absolutely	absolutely	RB
cord-289926-y1rjgbui	147	30	essential	essential	JJ
cord-289926-y1rjgbui	147	31	for	for	IN
cord-289926-y1rjgbui	147	32	the	the	DT
cord-289926-y1rjgbui	147	33	function	function	NN
cord-289926-y1rjgbui	147	34	of	of	IN
cord-289926-y1rjgbui	147	35	the	the	DT
cord-289926-y1rjgbui	147	36	protein	protein	NN
cord-289926-y1rjgbui	147	37	.	.	.
cord-289926-y1rjgbui	148	1	In	in	IN
cord-289926-y1rjgbui	148	2	the	the	DT
cord-289926-y1rjgbui	148	3	case	case	NN
cord-289926-y1rjgbui	148	4	of	of	IN
cord-289926-y1rjgbui	148	5	SRY	SRY	NNP
cord-289926-y1rjgbui	148	6	-	-	HYPH
cord-289926-y1rjgbui	148	7	HDAg	HDAg	NNP
cord-289926-y1rjgbui	148	8	this	this	DT
cord-289926-y1rjgbui	148	9	is	be	VBZ
cord-289926-y1rjgbui	148	10	indeed	indeed	RB
cord-289926-y1rjgbui	148	11	the	the	DT
cord-289926-y1rjgbui	148	12	case	case	NN
cord-289926-y1rjgbui	148	13	:	:	:
cord-289926-y1rjgbui	148	14	the	the	DT
cord-289926-y1rjgbui	148	15	region	region	NN
cord-289926-y1rjgbui	148	16	of	of	IN
cord-289926-y1rjgbui	148	17	similarity	similarity	NN
cord-289926-y1rjgbui	148	18	is	be	VBZ
cord-289926-y1rjgbui	148	19	limited	limit	VBN
cord-289926-y1rjgbui	148	20	to	to	IN
cord-289926-y1rjgbui	148	21	the	the	DT
cord-289926-y1rjgbui	148	22	RNA	RNA	NNP
cord-289926-y1rjgbui	148	23	-	-	HYPH
cord-289926-y1rjgbui	148	24	binding	bind	VBG
cord-289926-y1rjgbui	148	25	region	region	NN
cord-289926-y1rjgbui	148	26	of	of	IN
cord-289926-y1rjgbui	148	27	HDAg	HDAg	NNS
cord-289926-y1rjgbui	148	28	,	,	,
cord-289926-y1rjgbui	148	29	which	which	WDT
cord-289926-y1rjgbui	148	30	as	as	IN
cord-289926-y1rjgbui	148	31	been	be	VBN
cord-289926-y1rjgbui	148	32	shown	show	VBN
cord-289926-y1rjgbui	148	33	to	to	TO
cord-289926-y1rjgbui	148	34	be	be	VB
cord-289926-y1rjgbui	148	35	functionally	functionally	RB
cord-289926-y1rjgbui	148	36	important	important	JJ
cord-289926-y1rjgbui	148	37	[	[	-LRB-
cord-289926-y1rjgbui	148	38	32	32	CD
cord-289926-y1rjgbui	148	39	]	]	-RRB-
cord-289926-y1rjgbui	148	40	.	.	.
cord-289926-y1rjgbui	149	1	Two	two	CD
cord-289926-y1rjgbui	149	2	nuclear	nuclear	JJ
cord-289926-y1rjgbui	149	3	localization	localization	NN
cord-289926-y1rjgbui	149	4	signals	signal	NNS
cord-289926-y1rjgbui	149	5	(	(	-LRB-
cord-289926-y1rjgbui	149	6	NLSs	nls	NNS
cord-289926-y1rjgbui	149	7	)	)	-RRB-
cord-289926-y1rjgbui	149	8	recently	recently	RB
cord-289926-y1rjgbui	149	9	identified	identify	VBN
cord-289926-y1rjgbui	149	10	within	within	IN
cord-289926-y1rjgbui	149	11	the	the	DT
cord-289926-y1rjgbui	149	12	HMG	HMG	NNP
cord-289926-y1rjgbui	149	13	domain	domain	NN
cord-289926-y1rjgbui	149	14	of	of	IN
cord-289926-y1rjgbui	149	15	SRY	SRY	NNP
cord-289926-y1rjgbui	149	16	are	be	VBP
cord-289926-y1rjgbui	149	17	also	also	RB
cord-289926-y1rjgbui	149	18	conserved	conserve	VBN
cord-289926-y1rjgbui	149	19	within	within	IN
cord-289926-y1rjgbui	149	20	the	the	DT
cord-289926-y1rjgbui	149	21	RNA	RNA	NNP
cord-289926-y1rjgbui	149	22	-	-	HYPH
cord-289926-y1rjgbui	149	23	binding	bind	VBG
cord-289926-y1rjgbui	149	24	domain	domain	NN
cord-289926-y1rjgbui	149	25	of	of	IN
cord-289926-y1rjgbui	149	26	HDAg	HDAg	NNS
cord-289926-y1rjgbui	149	27	[	[	-LRB-
cord-289926-y1rjgbui	149	28	43	43	CD
cord-289926-y1rjgbui	149	29	]	]	-RRB-
cord-289926-y1rjgbui	149	30	.	.	.
cord-289926-y1rjgbui	150	1	These	these	DT
cord-289926-y1rjgbui	150	2	NLSs	nls	NNS
cord-289926-y1rjgbui	150	3	are	be	VBP
cord-289926-y1rjgbui	150	4	distinct	distinct	JJ
cord-289926-y1rjgbui	150	5	from	from	IN
cord-289926-y1rjgbui	150	6	an	an	DT
cord-289926-y1rjgbui	150	7	already	already	RB
cord-289926-y1rjgbui	150	8	identified	identify	VBN
cord-289926-y1rjgbui	150	9	bipartite	bipartite	JJ
cord-289926-y1rjgbui	150	10	NLS	nls	NN
cord-289926-y1rjgbui	150	11	within	within	IN
cord-289926-y1rjgbui	150	12	HDAg	HDAg	NNS
cord-289926-y1rjgbui	150	13	which	which	WDT
cord-289926-y1rjgbui	150	14	is	be	VBZ
cord-289926-y1rjgbui	150	15	located	locate	VBN
cord-289926-y1rjgbui	150	16	to	to	IN
cord-289926-y1rjgbui	150	17	the	the	DT
cord-289926-y1rjgbui	150	18	amino	amino	NN
cord-289926-y1rjgbui	150	19	terminal	terminal	JJ
cord-289926-y1rjgbui	150	20	side	side	NN
cord-289926-y1rjgbui	150	21	of	of	IN
cord-289926-y1rjgbui	150	22	the	the	DT
cord-289926-y1rjgbui	150	23	RNA	RNA	NNP
cord-289926-y1rjgbui	150	24	-	-	HYPH
cord-289926-y1rjgbui	150	25	binding	bind	VBG
cord-289926-y1rjgbui	150	26	domain	domain	NN
cord-289926-y1rjgbui	150	27	[	[	-LRB-
cord-289926-y1rjgbui	150	28	49	49	CD
cord-289926-y1rjgbui	150	29	]	]	-RRB-
cord-289926-y1rjgbui	150	30	.	.	.
cord-289926-y1rjgbui	151	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	151	2	model	model	NN
cord-289926-y1rjgbui	151	3	predicts	predict	VBZ
cord-289926-y1rjgbui	151	4	these	these	DT
cord-289926-y1rjgbui	151	5	new	new	JJ
cord-289926-y1rjgbui	151	6	NLSs	nls	NNS
cord-289926-y1rjgbui	151	7	should	should	MD
cord-289926-y1rjgbui	151	8	be	be	VB
cord-289926-y1rjgbui	151	9	functional	functional	JJ
cord-289926-y1rjgbui	151	10	in	in	IN
cord-289926-y1rjgbui	151	11	HDAg	hdag	NN
cord-289926-y1rjgbui	151	12	.	.	.
cord-289926-y1rjgbui	152	1	Recent	recent	JJ
cord-289926-y1rjgbui	152	2	experiments	experiment	NNS
cord-289926-y1rjgbui	152	3	demonstrate	demonstrate	VBP
cord-289926-y1rjgbui	152	4	that	that	IN
cord-289926-y1rjgbui	152	5	the	the	DT
cord-289926-y1rjgbui	152	6	presence	presence	NN
cord-289926-y1rjgbui	152	7	of	of	IN
cord-289926-y1rjgbui	152	8	either	either	DT
cord-289926-y1rjgbui	152	9	one	one	CD
cord-289926-y1rjgbui	152	10	of	of	IN
cord-289926-y1rjgbui	152	11	the	the	DT
cord-289926-y1rjgbui	152	12	ARM	arm	NN
cord-289926-y1rjgbui	152	13	sequences	sequence	NNS
cord-289926-y1rjgbui	152	14	is	be	VBZ
cord-289926-y1rjgbui	152	15	sufficient	sufficient	JJ
cord-289926-y1rjgbui	152	16	for	for	IN
cord-289926-y1rjgbui	152	17	nuclear	nuclear	JJ
cord-289926-y1rjgbui	152	18	localization	localization	NN
cord-289926-y1rjgbui	152	19	of	of	IN
cord-289926-y1rjgbui	152	20	the	the	DT
cord-289926-y1rjgbui	152	21	antigen	antigen	NN
cord-289926-y1rjgbui	152	22	,	,	,
cord-289926-y1rjgbui	152	23	supporting	support	VBG
cord-289926-y1rjgbui	152	24	our	-PRON-	PRP$
cord-289926-y1rjgbui	152	25	prediction	prediction	NN
cord-289926-y1rjgbui	152	26	[	[	-LRB-
cord-289926-y1rjgbui	152	27	9	9	CD
cord-289926-y1rjgbui	152	28	]	]	-RRB-
cord-289926-y1rjgbui	152	29	.	.	.
cord-289926-y1rjgbui	153	1	SRY	SRY	NNP
cord-289926-y1rjgbui	153	2	is	be	VBZ
cord-289926-y1rjgbui	153	3	the	the	DT
cord-289926-y1rjgbui	153	4	only	only	JJ
cord-289926-y1rjgbui	153	5	gene	gene	NN
cord-289926-y1rjgbui	153	6	from	from	IN
cord-289926-y1rjgbui	153	7	the	the	DT
cord-289926-y1rjgbui	153	8	Y	Y	NNP
cord-289926-y1rjgbui	153	9	chromosome	chromosome	NN
cord-289926-y1rjgbui	153	10	known	know	VBN
cord-289926-y1rjgbui	153	11	to	to	TO
cord-289926-y1rjgbui	153	12	be	be	VB
cord-289926-y1rjgbui	153	13	involved	involve	VBN
cord-289926-y1rjgbui	153	14	in	in	IN
cord-289926-y1rjgbui	153	15	testis	testis	NN
cord-289926-y1rjgbui	153	16	development	development	NN
cord-289926-y1rjgbui	153	17	.	.	.
cord-289926-y1rjgbui	154	1	It	-PRON-	PRP
cord-289926-y1rjgbui	154	2	is	be	VBZ
cord-289926-y1rjgbui	154	3	most	most	RBS
cord-289926-y1rjgbui	154	4	closely	closely	RB
cord-289926-y1rjgbui	154	5	related	related	JJ
cord-289926-y1rjgbui	154	6	to	to	IN
cord-289926-y1rjgbui	154	7	the	the	DT
cord-289926-y1rjgbui	154	8	SOX3	SOX3	NNP
cord-289926-y1rjgbui	154	9	gene	gene	NN
cord-289926-y1rjgbui	154	10	:	:	:
cord-289926-y1rjgbui	154	11	these	these	DT
cord-289926-y1rjgbui	154	12	genes	gene	NNS
cord-289926-y1rjgbui	154	13	were	be	VBD
cord-289926-y1rjgbui	154	14	proposed	propose	VBN
cord-289926-y1rjgbui	154	15	at	at	IN
cord-289926-y1rjgbui	154	16	one	one	CD
cord-289926-y1rjgbui	154	17	time	time	NN
cord-289926-y1rjgbui	154	18	to	to	TO
cord-289926-y1rjgbui	154	19	be	be	VB
cord-289926-y1rjgbui	154	20	alleles	allele	NNS
cord-289926-y1rjgbui	154	21	of	of	IN
cord-289926-y1rjgbui	154	22	a	a	DT
cord-289926-y1rjgbui	154	23	developmental	developmental	JJ
cord-289926-y1rjgbui	154	24	gene	gene	NN
cord-289926-y1rjgbui	154	25	on	on	IN
cord-289926-y1rjgbui	154	26	the	the	DT
cord-289926-y1rjgbui	154	27	undifferentiated	undifferentiated	JJ
cord-289926-y1rjgbui	154	28	or	or	CC
cord-289926-y1rjgbui	154	29	partially	partially	RB
cord-289926-y1rjgbui	154	30	differentiated	differentiate	VBN
cord-289926-y1rjgbui	154	31	proto	proto	JJ
cord-289926-y1rjgbui	154	32	-	-	HYPH
cord-289926-y1rjgbui	154	33	X	x	NN
cord-289926-y1rjgbui	154	34	and	and	CC
cord-289926-y1rjgbui	154	35	proto	proto	NN
cord-289926-y1rjgbui	154	36	-	-	HYPH
cord-289926-y1rjgbui	154	37	Y	y	NN
cord-289926-y1rjgbui	154	38	[	[	-LRB-
cord-289926-y1rjgbui	154	39	21	21	CD
cord-289926-y1rjgbui	154	40	]	]	-RRB-
cord-289926-y1rjgbui	154	41	.	.	.
cord-289926-y1rjgbui	155	1	SRY	SRY	NNP
cord-289926-y1rjgbui	155	2	is	be	VBZ
cord-289926-y1rjgbui	155	3	a	a	DT
cord-289926-y1rjgbui	155	4	member	member	NN
cord-289926-y1rjgbui	155	5	of	of	IN
cord-289926-y1rjgbui	155	6	HMG	HMG	NNP
cord-289926-y1rjgbui	155	7	superfamily	superfamily	NN
cord-289926-y1rjgbui	155	8	;	;	:
cord-289926-y1rjgbui	155	9	it	-PRON-	PRP
cord-289926-y1rjgbui	155	10	possesses	possess	VBZ
cord-289926-y1rjgbui	155	11	a	a	DT
cord-289926-y1rjgbui	155	12	79-residue	79-residue	JJ
cord-289926-y1rjgbui	155	13	long	long	JJ
cord-289926-y1rjgbui	155	14	HMG	HMG	NNP
cord-289926-y1rjgbui	155	15	box	box	NN
cord-289926-y1rjgbui	155	16	which	which	WDT
cord-289926-y1rjgbui	155	17	binds	bind	VBZ
cord-289926-y1rjgbui	155	18	to	to	IN
cord-289926-y1rjgbui	155	19	a	a	DT
cord-289926-y1rjgbui	155	20	well	well	RB
cord-289926-y1rjgbui	155	21	-	-	HYPH
cord-289926-y1rjgbui	155	22	defined	define	VBN
cord-289926-y1rjgbui	155	23	consensus	consensus	NN
cord-289926-y1rjgbui	155	24	sequence	sequence	NN
cord-289926-y1rjgbui	155	25	:	:	:
cord-289926-y1rjgbui	155	26	5	5	CD
cord-289926-y1rjgbui	155	27	-CCTTTGA	-CCTTTGA	:
cord-289926-y1rjgbui	155	28	and	and	CC
cord-289926-y1rjgbui	155	29	probably	probably	RB
cord-289926-y1rjgbui	155	30	controls	control	VBZ
cord-289926-y1rjgbui	155	31	the	the	DT
cord-289926-y1rjgbui	155	32	transcription	transcription	NN
cord-289926-y1rjgbui	155	33	of	of	IN
cord-289926-y1rjgbui	155	34	other	other	JJ
cord-289926-y1rjgbui	155	35	sex	sex	NN
cord-289926-y1rjgbui	155	36	-	-	HYPH
cord-289926-y1rjgbui	155	37	determination	determination	NN
cord-289926-y1rjgbui	155	38	genes	gene	NNS
cord-289926-y1rjgbui	155	39	.	.	.
cord-289926-y1rjgbui	156	1	The	the	DT
cord-289926-y1rjgbui	156	2	HMG	HMG	NNP
cord-289926-y1rjgbui	156	3	superfamily	superfamily	NN
cord-289926-y1rjgbui	156	4	is	be	VBZ
cord-289926-y1rjgbui	156	5	ancient	ancient	JJ
cord-289926-y1rjgbui	156	6	-it	-it	.
cord-289926-y1rjgbui	157	1	is	be	VBZ
cord-289926-y1rjgbui	157	2	present	present	JJ
cord-289926-y1rjgbui	157	3	in	in	IN
cord-289926-y1rjgbui	157	4	plants	plant	NNS
cord-289926-y1rjgbui	157	5	,	,	,
cord-289926-y1rjgbui	157	6	yeast	yeast	NN
cord-289926-y1rjgbui	157	7	and	and	CC
cord-289926-y1rjgbui	157	8	animals	animal	NNS
cord-289926-y1rjgbui	157	9	,	,	,
cord-289926-y1rjgbui	157	10	and	and	CC
cord-289926-y1rjgbui	157	11	is	be	VBZ
cord-289926-y1rjgbui	157	12	characterized	characterize	VBN
cord-289926-y1rjgbui	157	13	by	by	IN
cord-289926-y1rjgbui	157	14	highly	highly	RB
cord-289926-y1rjgbui	157	15	diverse	diverse	JJ
cord-289926-y1rjgbui	157	16	sequences	sequence	NNS
cord-289926-y1rjgbui	157	17	[	[	-LRB-
cord-289926-y1rjgbui	157	18	31	31	CD
cord-289926-y1rjgbui	157	19	]	]	-RRB-
cord-289926-y1rjgbui	157	20	.	.	.
cord-289926-y1rjgbui	158	1	Members	member	NNS
cord-289926-y1rjgbui	158	2	of	of	IN
cord-289926-y1rjgbui	158	3	the	the	DT
cord-289926-y1rjgbui	158	4	HMG	HMG	NNP
cord-289926-y1rjgbui	158	5	family	family	NN
cord-289926-y1rjgbui	158	6	may	may	MD
cord-289926-y1rjgbui	158	7	contain	contain	VB
cord-289926-y1rjgbui	158	8	single	single	JJ
cord-289926-y1rjgbui	158	9	or	or	CC
cord-289926-y1rjgbui	158	10	multiple	multiple	JJ
cord-289926-y1rjgbui	158	11	copies	copy	NNS
cord-289926-y1rjgbui	158	12	of	of	IN
cord-289926-y1rjgbui	158	13	the	the	DT
cord-289926-y1rjgbui	158	14	HMG	HMG	NNP
cord-289926-y1rjgbui	158	15	box	box	NN
cord-289926-y1rjgbui	158	16	;	;	:
cord-289926-y1rjgbui	158	17	some	some	DT
cord-289926-y1rjgbui	158	18	members	member	NNS
cord-289926-y1rjgbui	158	19	bind	bind	VBP
cord-289926-y1rjgbui	158	20	DNA	dna	NN
cord-289926-y1rjgbui	158	21	in	in	IN
cord-289926-y1rjgbui	158	22	a	a	DT
cord-289926-y1rjgbui	158	23	sequence	sequence	NN
cord-289926-y1rjgbui	158	24	-	-	HYPH
cord-289926-y1rjgbui	158	25	specific	specific	JJ
cord-289926-y1rjgbui	158	26	manner	manner	NN
cord-289926-y1rjgbui	158	27	,	,	,
cord-289926-y1rjgbui	158	28	others	other	NNS
cord-289926-y1rjgbui	158	29	bind	bind	VBP
cord-289926-y1rjgbui	158	30	DNA	DNA	NNP
cord-289926-y1rjgbui	158	31	non	non	NN
cord-289926-y1rjgbui	158	32	-	-	JJ
cord-289926-y1rjgbui	158	33	specifically	specifically	RB
cord-289926-y1rjgbui	158	34	,	,	,
cord-289926-y1rjgbui	158	35	and	and	CC
cord-289926-y1rjgbui	158	36	yet	yet	RB
cord-289926-y1rjgbui	158	37	others	other	NNS
cord-289926-y1rjgbui	158	38	recognize	recognize	VBP
cord-289926-y1rjgbui	158	39	and	and	CC
cord-289926-y1rjgbui	158	40	bind	bind	VB
cord-289926-y1rjgbui	158	41	to	to	IN
cord-289926-y1rjgbui	158	42	distorted	distorted	JJ
cord-289926-y1rjgbui	158	43	DNA	dna	NN
cord-289926-y1rjgbui	158	44	-such	-such	NN
cord-289926-y1rjgbui	158	45	as	as	IN
cord-289926-y1rjgbui	158	46	4-way	4-way	JJ
cord-289926-y1rjgbui	158	47	junctions	junction	NNS
cord-289926-y1rjgbui	158	48	or	or	CC
cord-289926-y1rjgbui	158	49	cisplatinmodified	cisplatinmodifie	VBN
cord-289926-y1rjgbui	158	50	DNA	DNA	NNP
cord-289926-y1rjgbui	158	51	[	[	-LRB-
cord-289926-y1rjgbui	158	52	38	38	CD
cord-289926-y1rjgbui	158	53	]	]	-RRB-
cord-289926-y1rjgbui	158	54	.	.	.
cord-289926-y1rjgbui	159	1	In	in	IN
cord-289926-y1rjgbui	159	2	all	all	DT
cord-289926-y1rjgbui	159	3	known	know	VBN
cord-289926-y1rjgbui	159	4	cases	case	NNS
cord-289926-y1rjgbui	159	5	,	,	,
cord-289926-y1rjgbui	159	6	the	the	DT
cord-289926-y1rjgbui	159	7	binding	binding	NN
cord-289926-y1rjgbui	159	8	of	of	IN
cord-289926-y1rjgbui	159	9	HMG	HMG	NNP
cord-289926-y1rjgbui	159	10	box	box	NN
cord-289926-y1rjgbui	159	11	proteins	protein	NNS
cord-289926-y1rjgbui	159	12	causes	cause	VBZ
cord-289926-y1rjgbui	159	13	distortion	distortion	NN
cord-289926-y1rjgbui	159	14	or	or	CC
cord-289926-y1rjgbui	159	15	a	a	DT
cord-289926-y1rjgbui	159	16	bend	bend	NN
cord-289926-y1rjgbui	159	17	in	in	IN
cord-289926-y1rjgbui	159	18	the	the	DT
cord-289926-y1rjgbui	159	19	DNA	dna	NN
cord-289926-y1rjgbui	159	20	[	[	-LRB-
cord-289926-y1rjgbui	159	21	38	38	CD
cord-289926-y1rjgbui	159	22	]	]	-RRB-
cord-289926-y1rjgbui	159	23	.	.	.
cord-289926-y1rjgbui	160	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	160	2	model	model	NN
cord-289926-y1rjgbui	160	3	therefore	therefore	RB
cord-289926-y1rjgbui	160	4	predicts	predict	VBZ
cord-289926-y1rjgbui	160	5	that	that	IN
cord-289926-y1rjgbui	160	6	HDAg	HDAg	NNS
cord-289926-y1rjgbui	160	7	will	will	MD
cord-289926-y1rjgbui	160	8	induce	induce	VB
cord-289926-y1rjgbui	160	9	a	a	DT
cord-289926-y1rjgbui	160	10	similar	similar	JJ
cord-289926-y1rjgbui	160	11	bend	bend	NN
cord-289926-y1rjgbui	160	12	when	when	WRB
cord-289926-y1rjgbui	160	13	binding	bind	VBG
cord-289926-y1rjgbui	160	14	to	to	IN
cord-289926-y1rjgbui	160	15	the	the	DT
cord-289926-y1rjgbui	160	16	HDV	HDV	NNP
cord-289926-y1rjgbui	160	17	genome	genome	NN
cord-289926-y1rjgbui	160	18	.	.	.
cord-289926-y1rjgbui	161	1	HDAg	HDAg	NNP
cord-289926-y1rjgbui	161	2	exhibits	exhibit	VBZ
cord-289926-y1rjgbui	161	3	binding	bind	VBG
cord-289926-y1rjgbui	161	4	specificity	specificity	NN
cord-289926-y1rjgbui	161	5	which	which	WDT
cord-289926-y1rjgbui	161	6	appears	appear	VBZ
cord-289926-y1rjgbui	161	7	to	to	TO
cord-289926-y1rjgbui	161	8	be	be	VB
cord-289926-y1rjgbui	161	9	determined	determine	VBN
cord-289926-y1rjgbui	161	10	primarily	primarily	RB
cord-289926-y1rjgbui	161	11	by	by	IN
cord-289926-y1rjgbui	161	12	the	the	DT
cord-289926-y1rjgbui	161	13	structure	structure	NN
cord-289926-y1rjgbui	161	14	of	of	IN
cord-289926-y1rjgbui	161	15	the	the	DT
cord-289926-y1rjgbui	161	16	HDV	HDV	NNP
cord-289926-y1rjgbui	161	17	RNA	RNA	NNP
cord-289926-y1rjgbui	161	18	.	.	.
cord-289926-y1rjgbui	162	1	However	however	RB
cord-289926-y1rjgbui	162	2	some	some	DT
cord-289926-y1rjgbui	162	3	sequence	sequence	NN
cord-289926-y1rjgbui	162	4	specificity	specificity	NN
cord-289926-y1rjgbui	162	5	is	be	VBZ
cord-289926-y1rjgbui	162	6	required	require	VBN
cord-289926-y1rjgbui	162	7	,	,	,
cord-289926-y1rjgbui	162	8	since	since	IN
cord-289926-y1rjgbui	162	9	HDAg	hdag	NN
cord-289926-y1rjgbui	162	10	binds	bind	VBZ
cord-289926-y1rjgbui	162	11	specifically	specifically	RB
cord-289926-y1rjgbui	162	12	to	to	IN
cord-289926-y1rjgbui	162	13	both	both	CC
cord-289926-y1rjgbui	162	14	a	a	DT
cord-289926-y1rjgbui	162	15	rod	rod	NN
cord-289926-y1rjgbui	162	16	-	-	HYPH
cord-289926-y1rjgbui	162	17	like	like	JJ
cord-289926-y1rjgbui	162	18	structure	structure	NN
cord-289926-y1rjgbui	162	19	comprising	comprise	VBG
cord-289926-y1rjgbui	162	20	the	the	DT
cord-289926-y1rjgbui	162	21	entire	entire	JJ
cord-289926-y1rjgbui	162	22	HDV	HDV	NNP
cord-289926-y1rjgbui	162	23	genome	genome	NN
cord-289926-y1rjgbui	162	24	,	,	,
cord-289926-y1rjgbui	162	25	and	and	CC
cord-289926-y1rjgbui	162	26	to	to	IN
cord-289926-y1rjgbui	162	27	a	a	DT
cord-289926-y1rjgbui	162	28	multiple	multiple	JJ
cord-289926-y1rjgbui	162	29	stem	stem	NN
cord-289926-y1rjgbui	162	30	-	-	HYPH
cord-289926-y1rjgbui	162	31	and	and	CC
cord-289926-y1rjgbui	162	32	-	-	HYPH
cord-289926-y1rjgbui	162	33	loop	loop	NN
cord-289926-y1rjgbui	162	34	structure	structure	NN
cord-289926-y1rjgbui	162	35	formed	form	VBN
cord-289926-y1rjgbui	162	36	by	by	IN
cord-289926-y1rjgbui	162	37	the	the	DT
cord-289926-y1rjgbui	162	38	fragment	fragment	NN
cord-289926-y1rjgbui	162	39	containing	contain	VBG
cord-289926-y1rjgbui	162	40	the	the	DT
cord-289926-y1rjgbui	162	41	ribozyme	ribozyme	NN
cord-289926-y1rjgbui	162	42	domain	domain	NN
cord-289926-y1rjgbui	162	43	of	of	IN
cord-289926-y1rjgbui	162	44	HDV	HDV	NNP
cord-289926-y1rjgbui	162	45	,	,	,
cord-289926-y1rjgbui	162	46	but	but	CC
cord-289926-y1rjgbui	162	47	does	do	VBZ
cord-289926-y1rjgbui	162	48	not	not	RB
cord-289926-y1rjgbui	162	49	bind	bind	VB
cord-289926-y1rjgbui	162	50	to	to	IN
cord-289926-y1rjgbui	162	51	the	the	DT
cord-289926-y1rjgbui	162	52	double	double	RB
cord-289926-y1rjgbui	162	53	-	-	HYPH
cord-289926-y1rjgbui	162	54	stranded	strand	VBN
cord-289926-y1rjgbui	162	55	RNA	RNA	NNP
cord-289926-y1rjgbui	162	56	derived	derive	VBN
cord-289926-y1rjgbui	162	57	from	from	IN
cord-289926-y1rjgbui	162	58	an	an	DT
cord-289926-y1rjgbui	162	59	unrelated	unrelated	JJ
cord-289926-y1rjgbui	162	60	coronavirus	coronavirus	NN
cord-289926-y1rjgbui	162	61	(	(	-LRB-
cord-289926-y1rjgbui	162	62	mouse	mouse	NNP
cord-289926-y1rjgbui	162	63	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	162	64	virus	virus	NN
cord-289926-y1rjgbui	162	65	)	)	-RRB-
cord-289926-y1rjgbui	162	66	[	[	-LRB-
cord-289926-y1rjgbui	162	67	33	33	CD
cord-289926-y1rjgbui	162	68	]	]	-RRB-
cord-289926-y1rjgbui	162	69	.	.	.
cord-289926-y1rjgbui	163	1	HMG	HMG	NNP
cord-289926-y1rjgbui	163	2	proteins	protein	NNS
cord-289926-y1rjgbui	163	3	can	can	MD
cord-289926-y1rjgbui	163	4	be	be	VB
cord-289926-y1rjgbui	163	5	divided	divide	VBN
cord-289926-y1rjgbui	163	6	into	into	IN
cord-289926-y1rjgbui	163	7	3	3	CD
cord-289926-y1rjgbui	163	8	major	major	JJ
cord-289926-y1rjgbui	163	9	groups	group	NNS
cord-289926-y1rjgbui	163	10	based	base	VBN
cord-289926-y1rjgbui	163	11	on	on	IN
cord-289926-y1rjgbui	163	12	their	-PRON-	PRP$
cord-289926-y1rjgbui	163	13	size	size	NN
cord-289926-y1rjgbui	163	14	,	,	,
cord-289926-y1rjgbui	163	15	sequence	sequence	NN
cord-289926-y1rjgbui	163	16	similarities	similarity	NNS
cord-289926-y1rjgbui	163	17	and	and	CC
cord-289926-y1rjgbui	163	18	DNA	dna	NN
cord-289926-y1rjgbui	163	19	-	-	HYPH
cord-289926-y1rjgbui	163	20	binding	bind	VBG
cord-289926-y1rjgbui	163	21	properties	property	NNS
cord-289926-y1rjgbui	163	22	:	:	:
cord-289926-y1rjgbui	163	23	HMG-1/-2	HMG-1/-2	NNP
cord-289926-y1rjgbui	163	24	,	,	,
cord-289926-y1rjgbui	163	25	HMG-14/-17	hmg-14/-17	NN
cord-289926-y1rjgbui	163	26	and	and	CC
cord-289926-y1rjgbui	163	27	HMG	HMG	NNP
cord-289926-y1rjgbui	164	1	-I	-I	NNP
cord-289926-y1rjgbui	164	2	/	/	SYM
cord-289926-y1rjgbui	164	3	Y	Y	NNP
cord-289926-y1rjgbui	164	4	[	[	-LRB-
cord-289926-y1rjgbui	164	5	2	2	CD
cord-289926-y1rjgbui	164	6	]	]	-RRB-
cord-289926-y1rjgbui	164	7	.	.	.
cord-289926-y1rjgbui	165	1	The	the	DT
cord-289926-y1rjgbui	165	2	SRY	SRY	NNP
cord-289926-y1rjgbui	165	3	gene	gene	NN
cord-289926-y1rjgbui	165	4	belongs	belong	VBZ
cord-289926-y1rjgbui	165	5	to	to	IN
cord-289926-y1rjgbui	165	6	the	the	DT
cord-289926-y1rjgbui	165	7	HMG-1/-2	HMG-1/-2	NNP
cord-289926-y1rjgbui	165	8	family	family	NN
cord-289926-y1rjgbui	165	9	,	,	,
cord-289926-y1rjgbui	165	10	which	which	WDT
cord-289926-y1rjgbui	165	11	is	be	VBZ
cord-289926-y1rjgbui	165	12	represented	represent	VBN
cord-289926-y1rjgbui	165	13	by	by	IN
cord-289926-y1rjgbui	165	14	the	the	DT
cord-289926-y1rjgbui	165	15	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	165	16	motif	motif	NN
cord-289926-y1rjgbui	165	17	and	and	CC
cord-289926-y1rjgbui	165	18	contains	contain	VBZ
cord-289926-y1rjgbui	165	19	2	2	CD
cord-289926-y1rjgbui	165	20	HMG	HMG	NNP
cord-289926-y1rjgbui	165	21	boxes	box	NNS
cord-289926-y1rjgbui	165	22	referred	refer	VBN
cord-289926-y1rjgbui	165	23	as	as	IN
cord-289926-y1rjgbui	165	24	HMG1.1	HMG1.1	NNP
cord-289926-y1rjgbui	165	25	and	and	CC
cord-289926-y1rjgbui	165	26	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	165	27	.	.	.
cord-289926-y1rjgbui	166	1	The	the	DT
cord-289926-y1rjgbui	166	2	HMG	HMG	NNP
cord-289926-y1rjgbui	166	3	box	box	NN
cord-289926-y1rjgbui	166	4	of	of	IN
cord-289926-y1rjgbui	166	5	SRY	SRY	NNP
cord-289926-y1rjgbui	166	6	is	be	VBZ
cord-289926-y1rjgbui	166	7	more	more	RBR
cord-289926-y1rjgbui	166	8	similar	similar	JJ
cord-289926-y1rjgbui	166	9	to	to	IN
cord-289926-y1rjgbui	166	10	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	166	11	,	,	,
cord-289926-y1rjgbui	166	12	which	which	WDT
cord-289926-y1rjgbui	166	13	is	be	VBZ
cord-289926-y1rjgbui	166	14	the	the	DT
cord-289926-y1rjgbui	166	15	most	most	RBS
cord-289926-y1rjgbui	166	16	likely	likely	JJ
cord-289926-y1rjgbui	166	17	candidate	candidate	NN
cord-289926-y1rjgbui	166	18	for	for	IN
cord-289926-y1rjgbui	166	19	an	an	DT
cord-289926-y1rjgbui	166	20	ancestral	ancestral	JJ
cord-289926-y1rjgbui	166	21	HMG1	HMG1	NNP
cord-289926-y1rjgbui	166	22	box	box	NN
cord-289926-y1rjgbui	166	23	[	[	-LRB-
cord-289926-y1rjgbui	166	24	2	2	CD
cord-289926-y1rjgbui	166	25	]	]	-RRB-
cord-289926-y1rjgbui	166	26	.	.	.
cord-289926-y1rjgbui	167	1	Ten	ten	CD
cord-289926-y1rjgbui	167	2	of	of	IN
cord-289926-y1rjgbui	167	3	17	17	CD
cord-289926-y1rjgbui	167	4	identities	identity	NNS
cord-289926-y1rjgbui	167	5	in	in	IN
cord-289926-y1rjgbui	167	6	the	the	DT
cord-289926-y1rjgbui	167	7	alignment	alignment	NN
cord-289926-y1rjgbui	167	8	of	of	IN
cord-289926-y1rjgbui	167	9	the	the	DT
cord-289926-y1rjgbui	167	10	HMG	HMG	NNP
cord-289926-y1rjgbui	167	11	box	box	NN
cord-289926-y1rjgbui	167	12	of	of	IN
cord-289926-y1rjgbui	167	13	SRY	SRY	NNP
cord-289926-y1rjgbui	167	14	with	with	IN
cord-289926-y1rjgbui	167	15	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	167	16	are	be	VBP
cord-289926-y1rjgbui	167	17	also	also	RB
cord-289926-y1rjgbui	167	18	present	present	JJ
cord-289926-y1rjgbui	167	19	in	in	IN
cord-289926-y1rjgbui	167	20	its	-PRON-	PRP$
cord-289926-y1rjgbui	167	21	alignment	alignment	NN
cord-289926-y1rjgbui	167	22	with	with	IN
cord-289926-y1rjgbui	167	23	the	the	DT
cord-289926-y1rjgbui	167	24	RNA	RNA	NNP
cord-289926-y1rjgbui	167	25	-	-	HYPH
cord-289926-y1rjgbui	167	26	binding	bind	VBG
cord-289926-y1rjgbui	167	27	domain	domain	NN
cord-289926-y1rjgbui	167	28	of	of	IN
cord-289926-y1rjgbui	167	29	HDAg	hdag	NN
cord-289926-y1rjgbui	167	30	,	,	,
cord-289926-y1rjgbui	167	31	and	and	CC
cord-289926-y1rjgbui	167	32	three	three	CD
cord-289926-y1rjgbui	167	33	of	of	IN
cord-289926-y1rjgbui	167	34	the	the	DT
cord-289926-y1rjgbui	167	35	remaining	remain	VBG
cord-289926-y1rjgbui	167	36	7	7	CD
cord-289926-y1rjgbui	167	37	show	show	NN
cord-289926-y1rjgbui	167	38	conservative	conservative	JJ
cord-289926-y1rjgbui	167	39	substitutions	substitution	NNS
cord-289926-y1rjgbui	167	40	(	(	-LRB-
cord-289926-y1rjgbui	167	41	K	k	NN
cord-289926-y1rjgbui	167	42	-	-	HYPH
cord-289926-y1rjgbui	167	43	>	>	XX
cord-289926-y1rjgbui	167	44	R	r	NN
cord-289926-y1rjgbui	167	45	,	,	,
cord-289926-y1rjgbui	167	46	A	a	NN
cord-289926-y1rjgbui	167	47	-	-	HYPH
cord-289926-y1rjgbui	167	48	>	>	NN
cord-289926-y1rjgbui	167	49	G	g	NN
cord-289926-y1rjgbui	167	50	,	,	,
cord-289926-y1rjgbui	167	51	A	A	NNP
cord-289926-y1rjgbui	167	52	->L	->L	NNP
cord-289926-y1rjgbui	167	53	,	,	,
cord-289926-y1rjgbui	167	54	Fig	Fig	NNP
cord-289926-y1rjgbui	167	55	.	.	NNP
cord-289926-y1rjgbui	167	56	3	3	CD
cord-289926-y1rjgbui	167	57	)	)	-RRB-
cord-289926-y1rjgbui	167	58	.	.	.
cord-289926-y1rjgbui	168	1	Thus	thus	RB
cord-289926-y1rjgbui	168	2	the	the	DT
cord-289926-y1rjgbui	168	3	sequence	sequence	NN
cord-289926-y1rjgbui	168	4	constraints	constraint	NNS
cord-289926-y1rjgbui	168	5	upon	upon	IN
cord-289926-y1rjgbui	168	6	the	the	DT
cord-289926-y1rjgbui	168	7	RNAbinding	rnabinding	NN
cord-289926-y1rjgbui	168	8	domain	domain	NN
cord-289926-y1rjgbui	168	9	can	can	MD
cord-289926-y1rjgbui	168	10	be	be	VB
cord-289926-y1rjgbui	168	11	traced	trace	VBN
cord-289926-y1rjgbui	168	12	back	back	RB
cord-289926-y1rjgbui	168	13	through	through	IN
cord-289926-y1rjgbui	168	14	the	the	DT
cord-289926-y1rjgbui	168	15	most	most	RBS
cord-289926-y1rjgbui	168	16	closely	closely	RB
cord-289926-y1rjgbui	168	17	related	related	JJ
cord-289926-y1rjgbui	168	18	HMG	HMG	NNP
cord-289926-y1rjgbui	168	19	box	box	NN
cord-289926-y1rjgbui	168	20	(	(	-LRB-
cord-289926-y1rjgbui	168	21	of	of	IN
cord-289926-y1rjgbui	168	22	SRY	SRY	NNP
cord-289926-y1rjgbui	168	23	)	)	-RRB-
cord-289926-y1rjgbui	168	24	to	to	IN
cord-289926-y1rjgbui	168	25	the	the	DT
cord-289926-y1rjgbui	168	26	ancestral	ancestral	JJ
cord-289926-y1rjgbui	168	27	sequence	sequence	NN
cord-289926-y1rjgbui	168	28	of	of	IN
cord-289926-y1rjgbui	168	29	the	the	DT
cord-289926-y1rjgbui	168	30	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	168	31	family	family	NN
cord-289926-y1rjgbui	168	32	.	.	.
cord-289926-y1rjgbui	169	1	The	the	DT
cord-289926-y1rjgbui	169	2	predicted	predict	VBN
cord-289926-y1rjgbui	169	3	secondary	secondary	JJ
cord-289926-y1rjgbui	169	4	structure	structure	NN
cord-289926-y1rjgbui	169	5	of	of	IN
cord-289926-y1rjgbui	169	6	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	169	7	and	and	CC
cord-289926-y1rjgbui	169	8	the	the	DT
cord-289926-y1rjgbui	169	9	solution	solution	NN
cord-289926-y1rjgbui	169	10	structure	structure	NN
cord-289926-y1rjgbui	169	11	of	of	IN
cord-289926-y1rjgbui	169	12	hamster	hamster	NN
cord-289926-y1rjgbui	169	13	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	169	14	have	have	VBP
cord-289926-y1rjgbui	169	15	been	be	VBN
cord-289926-y1rjgbui	169	16	determined	determine	VBN
cord-289926-y1rjgbui	169	17	[	[	-LRB-
cord-289926-y1rjgbui	169	18	38	38	CD
cord-289926-y1rjgbui	169	19	]	]	-RRB-
cord-289926-y1rjgbui	169	20	.	.	.
cord-289926-y1rjgbui	170	1	The	the	DT
cord-289926-y1rjgbui	170	2	structure	structure	NN
cord-289926-y1rjgbui	170	3	consists	consist	VBZ
cord-289926-y1rjgbui	170	4	of	of	IN
cord-289926-y1rjgbui	170	5	a	a	DT
cord-289926-y1rjgbui	170	6	stretch	stretch	NN
cord-289926-y1rjgbui	170	7	of	of	IN
cord-289926-y1rjgbui	170	8	basic	basic	JJ
cord-289926-y1rjgbui	170	9	residues	residue	NNS
cord-289926-y1rjgbui	170	10	followed	follow	VBN
cord-289926-y1rjgbui	170	11	by	by	IN
cord-289926-y1rjgbui	170	12	proline	proline	NN
cord-289926-y1rjgbui	170	13	at	at	IN
cord-289926-y1rjgbui	170	14	the	the	DT
cord-289926-y1rjgbui	170	15	N	n	CD
cord-289926-y1rjgbui	170	16	-	-	HYPH
cord-289926-y1rjgbui	170	17	terminal	terminal	JJ
cord-289926-y1rjgbui	170	18	end	end	NN
cord-289926-y1rjgbui	170	19	,	,	,
cord-289926-y1rjgbui	170	20	referred	refer	VBN
cord-289926-y1rjgbui	170	21	by	by	IN
cord-289926-y1rjgbui	170	22	the	the	DT
cord-289926-y1rjgbui	170	23	authors	author	NNS
cord-289926-y1rjgbui	170	24	as	as	IN
cord-289926-y1rjgbui	170	25	the	the	DT
cord-289926-y1rjgbui	170	26	'	'	``
cord-289926-y1rjgbui	170	27	terminal	terminal	JJ
cord-289926-y1rjgbui	170	28	unit	unit	NN
cord-289926-y1rjgbui	170	29	'	'	''
cord-289926-y1rjgbui	170	30	,	,	,
cord-289926-y1rjgbui	170	31	and	and	CC
cord-289926-y1rjgbui	170	32	3	3	CD
cord-289926-y1rjgbui	170	33	␣	␣	ADD
cord-289926-y1rjgbui	171	1	-helices	-helices	:
cord-289926-y1rjgbui	171	2	(	(	-LRB-
cord-289926-y1rjgbui	171	3	Fig	Fig	NNP
cord-289926-y1rjgbui	171	4	.	.	.
cord-289926-y1rjgbui	171	5	3	3	CD
cord-289926-y1rjgbui	171	6	)	)	-RRB-
cord-289926-y1rjgbui	171	7	.	.	.
cord-289926-y1rjgbui	172	1	The	the	DT
cord-289926-y1rjgbui	172	2	sequence	sequence	NN
cord-289926-y1rjgbui	172	3	similarity	similarity	NN
cord-289926-y1rjgbui	172	4	between	between	IN
cord-289926-y1rjgbui	172	5	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	172	6	and	and	CC
cord-289926-y1rjgbui	172	7	the	the	DT
cord-289926-y1rjgbui	172	8	RNA	RNA	NNP
cord-289926-y1rjgbui	172	9	-	-	HYPH
cord-289926-y1rjgbui	172	10	binding	bind	VBG
cord-289926-y1rjgbui	172	11	domain	domain	NN
cord-289926-y1rjgbui	172	12	of	of	IN
cord-289926-y1rjgbui	172	13	HDAg	hdag	NN
cord-289926-y1rjgbui	172	14	begins	begin	VBZ
cord-289926-y1rjgbui	172	15	within	within	IN
cord-289926-y1rjgbui	172	16	the	the	DT
cord-289926-y1rjgbui	172	17	terminal	terminal	JJ
cord-289926-y1rjgbui	172	18	unit	unit	NN
cord-289926-y1rjgbui	172	19	and	and	CC
cord-289926-y1rjgbui	172	20	continues	continue	VBZ
cord-289926-y1rjgbui	172	21	through	through	IN
cord-289926-y1rjgbui	172	22	first	first	JJ
cord-289926-y1rjgbui	172	23	and	and	CC
cord-289926-y1rjgbui	172	24	second	second	JJ
cord-289926-y1rjgbui	173	1	␣	␣	NNP
cord-289926-y1rjgbui	173	2	-helices	-helices	.
cord-289926-y1rjgbui	174	1	(	(	-LRB-
cord-289926-y1rjgbui	174	2	h1	h1	NNP
cord-289926-y1rjgbui	174	3	and	and	CC
cord-289926-y1rjgbui	174	4	h2	h2	NNP
cord-289926-y1rjgbui	174	5	)	)	-RRB-
cord-289926-y1rjgbui	174	6	.	.	.
cord-289926-y1rjgbui	175	1	Together	together	RB
cord-289926-y1rjgbui	175	2	,	,	,
cord-289926-y1rjgbui	175	3	these	these	DT
cord-289926-y1rjgbui	175	4	structures	structure	NNS
cord-289926-y1rjgbui	175	5	comprise	comprise	VBP
cord-289926-y1rjgbui	175	6	the	the	DT
cord-289926-y1rjgbui	175	7	side	side	NN
cord-289926-y1rjgbui	175	8	of	of	IN
cord-289926-y1rjgbui	175	9	a	a	DT
cord-289926-y1rjgbui	175	10	flat	flat	RB
cord-289926-y1rjgbui	175	11	-	-	HYPH
cord-289926-y1rjgbui	175	12	shaped	shaped	JJ
cord-289926-y1rjgbui	175	13	arrowhead	arrowhead	NN
cord-289926-y1rjgbui	175	14	which	which	WDT
cord-289926-y1rjgbui	175	15	is	be	VBZ
cord-289926-y1rjgbui	175	16	proposed	propose	VBN
cord-289926-y1rjgbui	175	17	to	to	TO
cord-289926-y1rjgbui	175	18	lie	lie	VB
cord-289926-y1rjgbui	175	19	along	along	IN
cord-289926-y1rjgbui	175	20	the	the	DT
cord-289926-y1rjgbui	175	21	minor	minor	JJ
cord-289926-y1rjgbui	175	22	groove	groove	NN
cord-289926-y1rjgbui	175	23	and	and	CC
cord-289926-y1rjgbui	175	24	continue	continue	VB
cord-289926-y1rjgbui	175	25	into	into	IN
cord-289926-y1rjgbui	175	26	the	the	DT
cord-289926-y1rjgbui	175	27	major	major	JJ
cord-289926-y1rjgbui	175	28	groove	groove	NN
cord-289926-y1rjgbui	175	29	of	of	IN
cord-289926-y1rjgbui	175	30	the	the	DT
cord-289926-y1rjgbui	175	31	DNA	dna	NN
cord-289926-y1rjgbui	175	32	[	[	-LRB-
cord-289926-y1rjgbui	175	33	38	38	CD
cord-289926-y1rjgbui	175	34	]	]	-RRB-
cord-289926-y1rjgbui	175	35	.	.	.
cord-289926-y1rjgbui	176	1	Interactions	interaction	NNS
cord-289926-y1rjgbui	176	2	between	between	IN
cord-289926-y1rjgbui	176	3	the	the	DT
cord-289926-y1rjgbui	176	4	terminal	terminal	JJ
cord-289926-y1rjgbui	176	5	unit	unit	NN
cord-289926-y1rjgbui	176	6	and	and	CC
cord-289926-y1rjgbui	176	7	the	the	DT
cord-289926-y1rjgbui	176	8	DNA	dna	NN
cord-289926-y1rjgbui	176	9	are	be	VBP
cord-289926-y1rjgbui	176	10	absolutely	absolutely	RB
cord-289926-y1rjgbui	176	11	essential	essential	JJ
cord-289926-y1rjgbui	176	12	[	[	-LRB-
cord-289926-y1rjgbui	176	13	38	38	CD
cord-289926-y1rjgbui	176	14	]	]	-RRB-
cord-289926-y1rjgbui	176	15	.	.	.
cord-289926-y1rjgbui	177	1	The	the	DT
cord-289926-y1rjgbui	177	2	sequence	sequence	NN
cord-289926-y1rjgbui	177	3	of	of	IN
cord-289926-y1rjgbui	177	4	the	the	DT
cord-289926-y1rjgbui	177	5	terminal	terminal	JJ
cord-289926-y1rjgbui	177	6	unit	unit	NN
cord-289926-y1rjgbui	177	7	is	be	VBZ
cord-289926-y1rjgbui	177	8	conserved	conserve	VBN
cord-289926-y1rjgbui	177	9	between	between	IN
cord-289926-y1rjgbui	177	10	SRY	sry	NN
cord-289926-y1rjgbui	177	11	and	and	CC
cord-289926-y1rjgbui	177	12	HDAg	HDAg	NNS
cord-289926-y1rjgbui	177	13	,	,	,
cord-289926-y1rjgbui	177	14	and	and	CC
cord-289926-y1rjgbui	177	15	it	-PRON-	PRP
cord-289926-y1rjgbui	177	16	is	be	VBZ
cord-289926-y1rjgbui	177	17	also	also	RB
cord-289926-y1rjgbui	177	18	similar	similar	JJ
cord-289926-y1rjgbui	177	19	to	to	IN
cord-289926-y1rjgbui	177	20	regions	region	NNS
cord-289926-y1rjgbui	177	21	of	of	IN
cord-289926-y1rjgbui	177	22	HMG1	HMG1	NNP
cord-289926-y1rjgbui	177	23	/	/	SYM
cord-289926-y1rjgbui	177	24	Y	Y	NNP
cord-289926-y1rjgbui	177	25	proteins	protein	NNS
cord-289926-y1rjgbui	177	26	,	,	,
cord-289926-y1rjgbui	177	27	perhaps	perhaps	RB
cord-289926-y1rjgbui	177	28	explaining	explain	VBG
cord-289926-y1rjgbui	177	29	why	why	WRB
cord-289926-y1rjgbui	177	30	a	a	DT
cord-289926-y1rjgbui	177	31	database	database	NN
cord-289926-y1rjgbui	177	32	search	search	NN
cord-289926-y1rjgbui	177	33	with	with	IN
cord-289926-y1rjgbui	177	34	the	the	DT
cord-289926-y1rjgbui	177	35	RNA	RNA	NNP
cord-289926-y1rjgbui	177	36	-	-	HYPH
cord-289926-y1rjgbui	177	37	binding	bind	VBG
cord-289926-y1rjgbui	177	38	domain	domain	NN
cord-289926-y1rjgbui	177	39	of	of	IN
cord-289926-y1rjgbui	177	40	HDAg	HDAg	NNS
cord-289926-y1rjgbui	177	41	showed	show	VBD
cord-289926-y1rjgbui	177	42	similarity	similarity	NN
cord-289926-y1rjgbui	177	43	to	to	IN
cord-289926-y1rjgbui	177	44	several	several	JJ
cord-289926-y1rjgbui	177	45	HMGI	HMGI	NNP
cord-289926-y1rjgbui	177	46	/	/	SYM
cord-289926-y1rjgbui	177	47	Y	Y	NNP
cord-289926-y1rjgbui	177	48	sequences	sequence	NNS
cord-289926-y1rjgbui	177	49	(	(	-LRB-
cord-289926-y1rjgbui	177	50	see	see	VB
cord-289926-y1rjgbui	177	51	'	'	''
cord-289926-y1rjgbui	177	52	Database	database	NN
cord-289926-y1rjgbui	177	53	searches	search	NNS
cord-289926-y1rjgbui	177	54	'	'	POS
cord-289926-y1rjgbui	177	55	section	section	NN
cord-289926-y1rjgbui	177	56	in	in	IN
cord-289926-y1rjgbui	177	57	Results	result	NNS
cord-289926-y1rjgbui	177	58	)	)	-RRB-
cord-289926-y1rjgbui	177	59	.	.	.
cord-289926-y1rjgbui	178	1	Helix	helix	NN
cord-289926-y1rjgbui	178	2	3	3	CD
cord-289926-y1rjgbui	178	3	of	of	IN
cord-289926-y1rjgbui	178	4	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	178	5	comprises	comprise	VBZ
cord-289926-y1rjgbui	178	6	the	the	DT
cord-289926-y1rjgbui	178	7	other	other	JJ
cord-289926-y1rjgbui	178	8	side	side	NN
cord-289926-y1rjgbui	178	9	of	of	IN
cord-289926-y1rjgbui	178	10	the	the	DT
cord-289926-y1rjgbui	178	11	arrowhead	arrowhead	NN
cord-289926-y1rjgbui	178	12	and	and	CC
cord-289926-y1rjgbui	178	13	is	be	VBZ
cord-289926-y1rjgbui	178	14	proposed	propose	VBN
cord-289926-y1rjgbui	178	15	to	to	TO
cord-289926-y1rjgbui	178	16	lie	lie	VB
cord-289926-y1rjgbui	178	17	along	along	IN
cord-289926-y1rjgbui	178	18	the	the	DT
cord-289926-y1rjgbui	178	19	phosphodiester	phosphodiester	NN
cord-289926-y1rjgbui	178	20	backbone	backbone	NN
cord-289926-y1rjgbui	178	21	of	of	IN
cord-289926-y1rjgbui	178	22	the	the	DT
cord-289926-y1rjgbui	178	23	DNA	dna	NN
cord-289926-y1rjgbui	178	24	[	[	-LRB-
cord-289926-y1rjgbui	178	25	38	38	CD
cord-289926-y1rjgbui	178	26	]	]	-RRB-
cord-289926-y1rjgbui	178	27	;	;	:
cord-289926-y1rjgbui	178	28	there	there	EX
cord-289926-y1rjgbui	178	29	is	be	VBZ
cord-289926-y1rjgbui	178	30	little	little	JJ
cord-289926-y1rjgbui	178	31	sequence	sequence	NN
cord-289926-y1rjgbui	178	32	similarity	similarity	NN
cord-289926-y1rjgbui	178	33	between	between	IN
cord-289926-y1rjgbui	178	34	this	this	DT
cord-289926-y1rjgbui	178	35	helix	helix	NN
cord-289926-y1rjgbui	178	36	and	and	CC
cord-289926-y1rjgbui	178	37	HDAg	hdag	NN
cord-289926-y1rjgbui	178	38	-there	-there	NN
cord-289926-y1rjgbui	178	39	appears	appear	VBZ
cord-289926-y1rjgbui	178	40	to	to	TO
cord-289926-y1rjgbui	178	41	be	be	VB
cord-289926-y1rjgbui	178	42	a	a	DT
cord-289926-y1rjgbui	178	43	deletion	deletion	NN
cord-289926-y1rjgbui	178	44	in	in	IN
cord-289926-y1rjgbui	178	45	the	the	DT
cord-289926-y1rjgbui	178	46	corresponding	correspond	VBG
cord-289926-y1rjgbui	178	47	region	region	NN
cord-289926-y1rjgbui	178	48	of	of	IN
cord-289926-y1rjgbui	178	49	HDAg	HDAg	NNS
cord-289926-y1rjgbui	178	50	.	.	.
cord-289926-y1rjgbui	179	1	However	however	RB
cord-289926-y1rjgbui	179	2	,	,	,
cord-289926-y1rjgbui	179	3	the	the	DT
cord-289926-y1rjgbui	179	4	region	region	NN
cord-289926-y1rjgbui	179	5	immediately	immediately	RB
cord-289926-y1rjgbui	179	6	following	follow	VBG
cord-289926-y1rjgbui	179	7	helix	helix	NN
cord-289926-y1rjgbui	179	8	3	3	CD
cord-289926-y1rjgbui	179	9	has	have	VBZ
cord-289926-y1rjgbui	179	10	a	a	DT
cord-289926-y1rjgbui	179	11	stretch	stretch	NN
cord-289926-y1rjgbui	179	12	of	of	IN
cord-289926-y1rjgbui	179	13	basic	basic	JJ
cord-289926-y1rjgbui	179	14	residues	residue	NNS
cord-289926-y1rjgbui	179	15	that	that	WDT
cord-289926-y1rjgbui	179	16	could	could	MD
cord-289926-y1rjgbui	179	17	be	be	VB
cord-289926-y1rjgbui	179	18	aligned	align	VBN
cord-289926-y1rjgbui	179	19	with	with	IN
cord-289926-y1rjgbui	179	20	the	the	DT
cord-289926-y1rjgbui	179	21	right	right	JJ
cord-289926-y1rjgbui	179	22	ARM	arm	NN
cord-289926-y1rjgbui	179	23	of	of	IN
cord-289926-y1rjgbui	179	24	the	the	DT
cord-289926-y1rjgbui	179	25	RNA	RNA	NNP
cord-289926-y1rjgbui	179	26	-	-	HYPH
cord-289926-y1rjgbui	179	27	binding	bind	VBG
cord-289926-y1rjgbui	179	28	domain	domain	NN
cord-289926-y1rjgbui	179	29	of	of	IN
cord-289926-y1rjgbui	179	30	HDAg	hdag	NN
cord-289926-y1rjgbui	179	31	(	(	-LRB-
cord-289926-y1rjgbui	179	32	Fig	Fig	NNP
cord-289926-y1rjgbui	179	33	.	.	.
cord-289926-y1rjgbui	179	34	3A	3A	NNP
cord-289926-y1rjgbui	179	35	)	)	-RRB-
cord-289926-y1rjgbui	179	36	.	.	.
cord-289926-y1rjgbui	180	1	It	-PRON-	PRP
cord-289926-y1rjgbui	180	2	is	be	VBZ
cord-289926-y1rjgbui	180	3	notable	notable	JJ
cord-289926-y1rjgbui	180	4	that	that	IN
cord-289926-y1rjgbui	180	5	the	the	DT
cord-289926-y1rjgbui	180	6	residues	residue	NNS
cord-289926-y1rjgbui	180	7	proposed	propose	VBN
cord-289926-y1rjgbui	180	8	to	to	TO
cord-289926-y1rjgbui	180	9	be	be	VB
cord-289926-y1rjgbui	180	10	involved	involve	VBN
cord-289926-y1rjgbui	180	11	in	in	IN
cord-289926-y1rjgbui	180	12	contacting	contact	VBG
cord-289926-y1rjgbui	180	13	DNA	DNA	NNP
cord-289926-y1rjgbui	180	14	(	(	-LRB-
cord-289926-y1rjgbui	180	15	terminal	terminal	JJ
cord-289926-y1rjgbui	180	16	unit	unit	NN
cord-289926-y1rjgbui	180	17	)	)	-RRB-
cord-289926-y1rjgbui	180	18	and	and	CC
cord-289926-y1rjgbui	180	19	those	those	DT
cord-289926-y1rjgbui	180	20	whose	whose	WP$
cord-289926-y1rjgbui	180	21	substitution	substitution	NN
cord-289926-y1rjgbui	180	22	is	be	VBZ
cord-289926-y1rjgbui	180	23	likely	likely	JJ
cord-289926-y1rjgbui	180	24	to	to	TO
cord-289926-y1rjgbui	180	25	cause	cause	VB
cord-289926-y1rjgbui	180	26	gross	gross	JJ
cord-289926-y1rjgbui	180	27	structural	structural	JJ
cord-289926-y1rjgbui	180	28	perturbations	perturbation	NNS
cord-289926-y1rjgbui	180	29	(	(	-LRB-
cord-289926-y1rjgbui	180	30	e.g.	e.g.	IN
cord-289926-y1rjgbui	180	31	replacement	replacement	NN
cord-289926-y1rjgbui	180	32	of	of	IN
cord-289926-y1rjgbui	180	33	the	the	DT
cord-289926-y1rjgbui	180	34	small	small	JJ
cord-289926-y1rjgbui	180	35	residue	residue	NN
cord-289926-y1rjgbui	180	36	at	at	IN
cord-289926-y1rjgbui	180	37	position	position	NN
cord-289926-y1rjgbui	180	38	40	40	CD
cord-289926-y1rjgbui	180	39	,	,	,
cord-289926-y1rjgbui	180	40	or	or	CC
cord-289926-y1rjgbui	180	41	the	the	DT
cord-289926-y1rjgbui	180	42	presence	presence	NN
cord-289926-y1rjgbui	180	43	of	of	IN
cord-289926-y1rjgbui	180	44	phenylalanine	phenylalanine	NN
cord-289926-y1rjgbui	180	45	at	at	IN
cord-289926-y1rjgbui	180	46	position	position	NN
cord-289926-y1rjgbui	180	47	11	11	CD
cord-289926-y1rjgbui	180	48	,	,	,
cord-289926-y1rjgbui	180	49	Fig	Fig	NNP
cord-289926-y1rjgbui	180	50	.	.	.
cord-289926-y1rjgbui	180	51	 	 	_SP
cord-289926-y1rjgbui	180	52	3	3	CD
cord-289926-y1rjgbui	180	53	)	)	-RRB-
cord-289926-y1rjgbui	180	54	are	be	VBP
cord-289926-y1rjgbui	180	55	conserved	conserve	VBN
cord-289926-y1rjgbui	180	56	among	among	IN
cord-289926-y1rjgbui	180	57	the	the	DT
cord-289926-y1rjgbui	180	58	HMG	HMG	NNP
cord-289926-y1rjgbui	180	59	boxes	box	NNS
cord-289926-y1rjgbui	180	60	of	of	IN
cord-289926-y1rjgbui	180	61	SRY	SRY	NNP
cord-289926-y1rjgbui	180	62	,	,	,
cord-289926-y1rjgbui	180	63	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	180	64	and	and	CC
cord-289926-y1rjgbui	180	65	the	the	DT
cord-289926-y1rjgbui	180	66	RNA	RNA	NNP
cord-289926-y1rjgbui	180	67	-	-	HYPH
cord-289926-y1rjgbui	180	68	binding	bind	VBG
cord-289926-y1rjgbui	180	69	domain	domain	NN
cord-289926-y1rjgbui	180	70	of	of	IN
cord-289926-y1rjgbui	180	71	HDAg	HDAg	NNS
cord-289926-y1rjgbui	180	72	.	.	.
cord-289926-y1rjgbui	181	1	Gly-40	Gly-40	NNP
cord-289926-y1rjgbui	181	2	is	be	VBZ
cord-289926-y1rjgbui	181	3	proposed	propose	VBN
cord-289926-y1rjgbui	181	4	to	to	TO
cord-289926-y1rjgbui	181	5	pack	pack	VB
cord-289926-y1rjgbui	181	6	closely	closely	RB
cord-289926-y1rjgbui	181	7	to	to	IN
cord-289926-y1rjgbui	181	8	Phe-10	Phe-10	NNP
cord-289926-y1rjgbui	181	9	in	in	IN
cord-289926-y1rjgbui	181	10	the	the	DT
cord-289926-y1rjgbui	181	11	first	first	JJ
cord-289926-y1rjgbui	181	12	helix	helix	NN
cord-289926-y1rjgbui	181	13	in	in	IN
cord-289926-y1rjgbui	181	14	the	the	DT
cord-289926-y1rjgbui	181	15	resolved	resolve	VBN
cord-289926-y1rjgbui	181	16	structure	structure	NN
cord-289926-y1rjgbui	181	17	for	for	IN
cord-289926-y1rjgbui	181	18	HMG1.2	HMG1.2	NNP
cord-289926-y1rjgbui	181	19	of	of	IN
cord-289926-y1rjgbui	181	20	hamster	hamster	NN
cord-289926-y1rjgbui	181	21	[	[	-LRB-
cord-289926-y1rjgbui	181	22	38	38	CD
cord-289926-y1rjgbui	181	23	]	]	-RRB-
cord-289926-y1rjgbui	181	24	.	.	.
cord-289926-y1rjgbui	182	1	These	these	DT
cord-289926-y1rjgbui	182	2	two	two	CD
cord-289926-y1rjgbui	182	3	residues	residue	NNS
cord-289926-y1rjgbui	182	4	are	be	VBP
cord-289926-y1rjgbui	182	5	also	also	RB
cord-289926-y1rjgbui	182	6	preserved	preserve	VBN
cord-289926-y1rjgbui	182	7	within	within	IN
cord-289926-y1rjgbui	182	8	the	the	DT
cord-289926-y1rjgbui	182	9	RNA	rna	NN
cord-289926-y1rjgbui	182	10	-	-	HYPH
cord-289926-y1rjgbui	182	11	binding	bind	VBG
cord-289926-y1rjgbui	182	12	domain	domain	NN
cord-289926-y1rjgbui	182	13	of	of	IN
cord-289926-y1rjgbui	182	14	HDAg	HDAg	NNS
cord-289926-y1rjgbui	182	15	.	.	.
cord-289926-y1rjgbui	183	1	On	on	IN
cord-289926-y1rjgbui	183	2	the	the	DT
cord-289926-y1rjgbui	183	3	other	other	JJ
cord-289926-y1rjgbui	183	4	hand	hand	NN
cord-289926-y1rjgbui	183	5	,	,	,
cord-289926-y1rjgbui	183	6	many	many	JJ
cord-289926-y1rjgbui	183	7	of	of	IN
cord-289926-y1rjgbui	183	8	the	the	DT
cord-289926-y1rjgbui	183	9	residues	residue	NNS
cord-289926-y1rjgbui	183	10	involved	involve	VBN
cord-289926-y1rjgbui	183	11	in	in	IN
cord-289926-y1rjgbui	183	12	tertiary	tertiary	JJ
cord-289926-y1rjgbui	183	13	folding	folding	NN
cord-289926-y1rjgbui	183	14	of	of	IN
cord-289926-y1rjgbui	183	15	the	the	DT
cord-289926-y1rjgbui	183	16	HMG	HMG	NNP
cord-289926-y1rjgbui	183	17	domain	domain	NN
cord-289926-y1rjgbui	183	18	have	have	VBP
cord-289926-y1rjgbui	183	19	been	be	VBN
cord-289926-y1rjgbui	183	20	replaced	replace	VBN
cord-289926-y1rjgbui	183	21	or	or	CC
cord-289926-y1rjgbui	183	22	deleted	delete	VBN
cord-289926-y1rjgbui	183	23	:	:	:
cord-289926-y1rjgbui	183	24	in	in	IN
cord-289926-y1rjgbui	183	25	the	the	DT
cord-289926-y1rjgbui	183	26	RNA	RNA	NNP
cord-289926-y1rjgbui	183	27	binding	binding	NN
cord-289926-y1rjgbui	183	28	region	region	NN
cord-289926-y1rjgbui	183	29	of	of	IN
cord-289926-y1rjgbui	183	30	HDAg	HDAg	NNP
cord-289926-y1rjgbui	184	1	the	the	DT
cord-289926-y1rjgbui	184	2	N	n	CD
cord-289926-y1rjgbui	184	3	-	-	HYPH
cord-289926-y1rjgbui	184	4	terminal	terminal	JJ
cord-289926-y1rjgbui	184	5	portion	portion	NN
cord-289926-y1rjgbui	184	6	of	of	IN
cord-289926-y1rjgbui	184	7	helix	helix	NN
cord-289926-y1rjgbui	184	8	1	1	CD
cord-289926-y1rjgbui	184	9	consists	consist	NNS
cord-289926-y1rjgbui	184	10	of	of	IN
cord-289926-y1rjgbui	184	11	polar	polar	JJ
cord-289926-y1rjgbui	184	12	and	and	CC
cord-289926-y1rjgbui	184	13	charged	charge	VBN
cord-289926-y1rjgbui	184	14	residues	residue	NNS
cord-289926-y1rjgbui	184	15	,	,	,
cord-289926-y1rjgbui	184	16	while	while	IN
cord-289926-y1rjgbui	184	17	the	the	DT
cord-289926-y1rjgbui	184	18	same	same	JJ
cord-289926-y1rjgbui	184	19	region	region	NN
cord-289926-y1rjgbui	184	20	in	in	IN
cord-289926-y1rjgbui	184	21	the	the	DT
cord-289926-y1rjgbui	184	22	HMG	HMG	NNP
cord-289926-y1rjgbui	184	23	box	box	NN
cord-289926-y1rjgbui	184	24	is	be	VBZ
cord-289926-y1rjgbui	184	25	hydrophobic	hydrophobic	JJ
cord-289926-y1rjgbui	184	26	(	(	-LRB-
cord-289926-y1rjgbui	184	27	Fig	Fig	NNP
cord-289926-y1rjgbui	184	28	.	.	.
cord-289926-y1rjgbui	184	29	3A	3A	NNP
cord-289926-y1rjgbui	184	30	)	)	-RRB-
cord-289926-y1rjgbui	184	31	.	.	.
cord-289926-y1rjgbui	185	1	Another	another	DT
cord-289926-y1rjgbui	185	2	notable	notable	JJ
cord-289926-y1rjgbui	185	3	feature	feature	NN
cord-289926-y1rjgbui	185	4	is	be	VBZ
cord-289926-y1rjgbui	185	5	the	the	DT
cord-289926-y1rjgbui	185	6	lack	lack	NN
cord-289926-y1rjgbui	185	7	of	of	IN
cord-289926-y1rjgbui	185	8	tryptophan	tryptophan	NN
cord-289926-y1rjgbui	185	9	residues	residue	NNS
cord-289926-y1rjgbui	185	10	in	in	IN
cord-289926-y1rjgbui	185	11	the	the	DT
cord-289926-y1rjgbui	185	12	RNA	RNA	NNP
cord-289926-y1rjgbui	185	13	-	-	HYPH
cord-289926-y1rjgbui	185	14	binding	bind	VBG
cord-289926-y1rjgbui	185	15	domain	domain	NN
cord-289926-y1rjgbui	185	16	(	(	-LRB-
cord-289926-y1rjgbui	185	17	SRY	SRY	NNP
cord-289926-y1rjgbui	185	18	has	have	VBZ
cord-289926-y1rjgbui	185	19	3	3	CD
cord-289926-y1rjgbui	185	20	tryptophan	tryptophan	NN
cord-289926-y1rjgbui	185	21	residues	residue	NNS
cord-289926-y1rjgbui	185	22	,	,	,
cord-289926-y1rjgbui	185	23	SOX3	SOX3	NNP
cord-289926-y1rjgbui	185	24	has	have	VBZ
cord-289926-y1rjgbui	185	25	2	2	CD
cord-289926-y1rjgbui	185	26	tryptophan	tryptophan	NN
cord-289926-y1rjgbui	185	27	residues	residue	NNS
cord-289926-y1rjgbui	185	28	and	and	CC
cord-289926-y1rjgbui	185	29	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	185	30	has	have	VBZ
cord-289926-y1rjgbui	185	31	1	1	CD
cord-289926-y1rjgbui	185	32	tryptophan	tryptophan	NN
cord-289926-y1rjgbui	185	33	residue	residue	NN
cord-289926-y1rjgbui	185	34	)	)	-RRB-
cord-289926-y1rjgbui	185	35	and	and	CC
cord-289926-y1rjgbui	185	36	an	an	DT
cord-289926-y1rjgbui	185	37	overall	overall	JJ
cord-289926-y1rjgbui	185	38	lower	low	JJR
cord-289926-y1rjgbui	185	39	percentage	percentage	NN
cord-289926-y1rjgbui	185	40	of	of	IN
cord-289926-y1rjgbui	185	41	the	the	DT
cord-289926-y1rjgbui	185	42	hydrophobic	hydrophobic	JJ
cord-289926-y1rjgbui	185	43	residues	residue	NNS
cord-289926-y1rjgbui	185	44	.	.	.
cord-289926-y1rjgbui	186	1	The	the	DT
cord-289926-y1rjgbui	186	2	structure	structure	NN
cord-289926-y1rjgbui	186	3	of	of	IN
cord-289926-y1rjgbui	186	4	the	the	DT
cord-289926-y1rjgbui	186	5	RNAbinding	rnabinding	NN
cord-289926-y1rjgbui	186	6	domain	domain	NN
cord-289926-y1rjgbui	186	7	of	of	IN
cord-289926-y1rjgbui	186	8	HDAg	hdag	NN
cord-289926-y1rjgbui	186	9	has	have	VBZ
cord-289926-y1rjgbui	186	10	not	not	RB
cord-289926-y1rjgbui	186	11	yet	yet	RB
cord-289926-y1rjgbui	186	12	been	be	VBN
cord-289926-y1rjgbui	186	13	determined	determine	VBN
cord-289926-y1rjgbui	186	14	,	,	,
cord-289926-y1rjgbui	186	15	but	but	CC
cord-289926-y1rjgbui	186	16	a	a	DT
cord-289926-y1rjgbui	186	17	computer	computer	NN
cord-289926-y1rjgbui	186	18	generated	generate	VBD
cord-289926-y1rjgbui	186	19	model	model	NN
cord-289926-y1rjgbui	186	20	[	[	-LRB-
cord-289926-y1rjgbui	186	21	47	47	CD
cord-289926-y1rjgbui	186	22	]	]	-RRB-
cord-289926-y1rjgbui	186	23	predicts	predict	VBZ
cord-289926-y1rjgbui	186	24	a	a	DT
cord-289926-y1rjgbui	186	25	helix	helix	NN
cord-289926-y1rjgbui	186	26	-	-	HYPH
cord-289926-y1rjgbui	186	27	loop	loop	NN
cord-289926-y1rjgbui	186	28	-	-	HYPH
cord-289926-y1rjgbui	186	29	helix	helix	NN
cord-289926-y1rjgbui	186	30	structure	structure	NN
cord-289926-y1rjgbui	186	31	in	in	IN
cord-289926-y1rjgbui	186	32	which	which	WDT
cord-289926-y1rjgbui	186	33	the	the	DT
cord-289926-y1rjgbui	186	34	first	first	JJ
cord-289926-y1rjgbui	186	35	helix	helix	NN
cord-289926-y1rjgbui	186	36	covers	cover	VBZ
cord-289926-y1rjgbui	186	37	regions	region	NNS
cord-289926-y1rjgbui	186	38	corresponding	correspond	VBG
cord-289926-y1rjgbui	186	39	to	to	IN
cord-289926-y1rjgbui	186	40	helix	helix	NN
cord-289926-y1rjgbui	186	41	1	1	CD
cord-289926-y1rjgbui	186	42	and	and	CC
cord-289926-y1rjgbui	186	43	part	part	NN
cord-289926-y1rjgbui	186	44	of	of	IN
cord-289926-y1rjgbui	186	45	helix	helix	NN
cord-289926-y1rjgbui	186	46	2	2	CD
cord-289926-y1rjgbui	186	47	of	of	IN
cord-289926-y1rjgbui	186	48	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	186	49	,	,	,
cord-289926-y1rjgbui	186	50	while	while	IN
cord-289926-y1rjgbui	186	51	the	the	DT
cord-289926-y1rjgbui	186	52	second	second	JJ
cord-289926-y1rjgbui	186	53	helix	helix	NN
cord-289926-y1rjgbui	186	54	of	of	IN
cord-289926-y1rjgbui	186	55	the	the	DT
cord-289926-y1rjgbui	186	56	RNA	RNA	NNP
cord-289926-y1rjgbui	186	57	-	-	HYPH
cord-289926-y1rjgbui	186	58	binding	bind	VBG
cord-289926-y1rjgbui	186	59	domain	domain	NN
cord-289926-y1rjgbui	186	60	corresponds	correspond	VBZ
cord-289926-y1rjgbui	186	61	to	to	IN
cord-289926-y1rjgbui	186	62	helix	helix	NN
cord-289926-y1rjgbui	186	63	3	3	CD
cord-289926-y1rjgbui	186	64	of	of	IN
cord-289926-y1rjgbui	186	65	HMG-1	hmg-1	NN
cord-289926-y1rjgbui	187	1	(	(	-LRB-
cord-289926-y1rjgbui	187	2	Fig	Fig	NNP
cord-289926-y1rjgbui	187	3	.	.	.
cord-289926-y1rjgbui	187	4	3C	3C	NNP
cord-289926-y1rjgbui	187	5	)	)	-RRB-
cord-289926-y1rjgbui	187	6	.	.	.
cord-289926-y1rjgbui	188	1	Based	base	VBN
cord-289926-y1rjgbui	188	2	on	on	IN
cord-289926-y1rjgbui	188	3	the	the	DT
cord-289926-y1rjgbui	188	4	sequence	sequence	NN
cord-289926-y1rjgbui	188	5	similarities	similarity	NNS
cord-289926-y1rjgbui	188	6	discussed	discuss	VBN
cord-289926-y1rjgbui	188	7	above	above	IN
cord-289926-y1rjgbui	188	8	we	-PRON-	PRP
cord-289926-y1rjgbui	188	9	suggest	suggest	VBP
cord-289926-y1rjgbui	188	10	that	that	IN
cord-289926-y1rjgbui	188	11	the	the	DT
cord-289926-y1rjgbui	188	12	DNAbinding	dnabinding	NN
cord-289926-y1rjgbui	188	13	domain	domain	NN
cord-289926-y1rjgbui	188	14	of	of	IN
cord-289926-y1rjgbui	188	15	SRY	SRY	NNP
cord-289926-y1rjgbui	188	16	has	have	VBZ
cord-289926-y1rjgbui	188	17	evolved	evolve	VBN
cord-289926-y1rjgbui	188	18	into	into	IN
cord-289926-y1rjgbui	188	19	the	the	DT
cord-289926-y1rjgbui	188	20	RNA	RNA	NNP
cord-289926-y1rjgbui	188	21	-	-	HYPH
cord-289926-y1rjgbui	188	22	binding	bind	VBG
cord-289926-y1rjgbui	188	23	domain	domain	NN
cord-289926-y1rjgbui	188	24	of	of	IN
cord-289926-y1rjgbui	188	25	HDAg	HDAg	NNS
cord-289926-y1rjgbui	188	26	.	.	.
cord-289926-y1rjgbui	189	1	This	this	DT
cord-289926-y1rjgbui	189	2	particular	particular	JJ
cord-289926-y1rjgbui	189	3	case	case	NN
cord-289926-y1rjgbui	189	4	is	be	VBZ
cord-289926-y1rjgbui	189	5	hardly	hardly	RB
cord-289926-y1rjgbui	189	6	unique	unique	JJ
cord-289926-y1rjgbui	189	7	:	:	:
cord-289926-y1rjgbui	189	8	many	many	JJ
cord-289926-y1rjgbui	189	9	recent	recent	JJ
cord-289926-y1rjgbui	189	10	publications	publication	NNS
cord-289926-y1rjgbui	189	11	report	report	VBP
cord-289926-y1rjgbui	189	12	proteins	protein	NNS
cord-289926-y1rjgbui	189	13	that	that	WDT
cord-289926-y1rjgbui	189	14	bind	bind	VBP
cord-289926-y1rjgbui	189	15	to	to	IN
cord-289926-y1rjgbui	189	16	both	both	CC
cord-289926-y1rjgbui	189	17	DNA	DNA	NNP
cord-289926-y1rjgbui	189	18	and	and	CC
cord-289926-y1rjgbui	189	19	RNA	RNA	NNP
cord-289926-y1rjgbui	189	20	.	.	.
cord-289926-y1rjgbui	190	1	Among	among	IN
cord-289926-y1rjgbui	190	2	such	such	JJ
cord-289926-y1rjgbui	190	3	proteins	protein	NNS
cord-289926-y1rjgbui	190	4	are	be	VBP
cord-289926-y1rjgbui	190	5	:	:	:
cord-289926-y1rjgbui	190	6	DNA	dna	NN
cord-289926-y1rjgbui	190	7	-	-	HYPH
cord-289926-y1rjgbui	190	8	binding	bind	VBG
cord-289926-y1rjgbui	190	9	protein	protein	NN
cord-289926-y1rjgbui	190	10	SSAP	SSAP	NNP
cord-289926-y1rjgbui	190	11	,	,	,
cord-289926-y1rjgbui	190	12	which	which	WDT
cord-289926-y1rjgbui	190	13	contains	contain	VBZ
cord-289926-y1rjgbui	190	14	an	an	DT
cord-289926-y1rjgbui	190	15	RNA	RNA	NNP
cord-289926-y1rjgbui	190	16	Recognition	recognition	NN
cord-289926-y1rjgbui	190	17	Motif	motif	NN
cord-289926-y1rjgbui	190	18	(	(	-LRB-
cord-289926-y1rjgbui	190	19	RRM	rrm	NN
cord-289926-y1rjgbui	190	20	)	)	-RRB-
cord-289926-y1rjgbui	190	21	and	and	CC
cord-289926-y1rjgbui	190	22	specifically	specifically	RB
cord-289926-y1rjgbui	190	23	binds	bind	VBZ
cord-289926-y1rjgbui	190	24	to	to	IN
cord-289926-y1rjgbui	190	25	the	the	DT
cord-289926-y1rjgbui	190	26	enhancer	enhancer	NN
cord-289926-y1rjgbui	190	27	region	region	NN
cord-289926-y1rjgbui	190	28	of	of	IN
cord-289926-y1rjgbui	190	29	sea	sea	NN
cord-289926-y1rjgbui	190	30	urchin	urchin	NN
cord-289926-y1rjgbui	190	31	histone	histone	NN
cord-289926-y1rjgbui	190	32	H1	H1	NNP
cord-289926-y1rjgbui	190	33	[	[	-LRB-
cord-289926-y1rjgbui	190	34	13	13	CD
cord-289926-y1rjgbui	190	35	]	]	-RRB-
cord-289926-y1rjgbui	190	36	,	,	,
cord-289926-y1rjgbui	190	37	human	human	JJ
cord-289926-y1rjgbui	190	38	transcriptional	transcriptional	JJ
cord-289926-y1rjgbui	190	39	activator	activator	NN
cord-289926-y1rjgbui	190	40	p54nrb	p54nrb	NNP
cord-289926-y1rjgbui	190	41	which	which	WDT
cord-289926-y1rjgbui	190	42	binds	bind	VBZ
cord-289926-y1rjgbui	190	43	both	both	DT
cord-289926-y1rjgbui	190	44	DNA	dna	NN
cord-289926-y1rjgbui	190	45	and	and	CC
cord-289926-y1rjgbui	190	46	pre	pre	JJ
cord-289926-y1rjgbui	190	47	-	-	JJ
cord-289926-y1rjgbui	190	48	mRNA	mrna	JJ
cord-289926-y1rjgbui	190	49	[	[	-LRB-
cord-289926-y1rjgbui	190	50	1	1	CD
cord-289926-y1rjgbui	190	51	]	]	-RRB-
cord-289926-y1rjgbui	190	52	,	,	,
cord-289926-y1rjgbui	190	53	mammalian	mammalian	JJ
cord-289926-y1rjgbui	190	54	protein	protein	NN
cord-289926-y1rjgbui	190	55	H16	H16	NNP
cord-289926-y1rjgbui	190	56	which	which	WDT
cord-289926-y1rjgbui	190	57	binds	bind	VBZ
cord-289926-y1rjgbui	190	58	to	to	IN
cord-289926-y1rjgbui	190	59	single	single	JJ
cord-289926-y1rjgbui	190	60	stranded	strand	VBN
cord-289926-y1rjgbui	190	61	DNA	dna	NN
cord-289926-y1rjgbui	190	62	and	and	CC
cord-289926-y1rjgbui	190	63	to	to	IN
cord-289926-y1rjgbui	190	64	the	the	DT
cord-289926-y1rjgbui	190	65	corresponding	correspond	VBG
cord-289926-y1rjgbui	190	66	RNA	RNA	NNP
cord-289926-y1rjgbui	190	67	sequence	sequence	NN
cord-289926-y1rjgbui	190	68	[	[	-LRB-
cord-289926-y1rjgbui	190	69	23	23	CD
cord-289926-y1rjgbui	190	70	]	]	-RRB-
cord-289926-y1rjgbui	190	71	,	,	,
cord-289926-y1rjgbui	190	72	and	and	CC
cord-289926-y1rjgbui	190	73	Y	Y	NNP
cord-289926-y1rjgbui	190	74	-	-	HYPH
cord-289926-y1rjgbui	190	75	box	box	NN
cord-289926-y1rjgbui	190	76	proteins	protein	NNS
cord-289926-y1rjgbui	190	77	which	which	WDT
cord-289926-y1rjgbui	190	78	recognize	recognize	VBP
cord-289926-y1rjgbui	190	79	both	both	CC
cord-289926-y1rjgbui	190	80	RNA	RNA	NNP
cord-289926-y1rjgbui	190	81	and	and	CC
cord-289926-y1rjgbui	190	82	DNA	DNA	NNP
cord-289926-y1rjgbui	190	83	[	[	-LRB-
cord-289926-y1rjgbui	190	84	48	48	CD
cord-289926-y1rjgbui	190	85	]	]	-RRB-
cord-289926-y1rjgbui	190	86	.	.	.
cord-289926-y1rjgbui	191	1	Two	two	CD
cord-289926-y1rjgbui	191	2	RNA	rna	NN
cord-289926-y1rjgbui	191	3	-	-	HYPH
cord-289926-y1rjgbui	191	4	binding	bind	VBG
cord-289926-y1rjgbui	191	5	proteins	protein	NNS
cord-289926-y1rjgbui	191	6	have	have	VBP
cord-289926-y1rjgbui	191	7	been	be	VBN
cord-289926-y1rjgbui	191	8	shown	show	VBN
cord-289926-y1rjgbui	191	9	to	to	TO
cord-289926-y1rjgbui	191	10	have	have	VB
cord-289926-y1rjgbui	191	11	a	a	DT
cord-289926-y1rjgbui	191	12	similar	similar	JJ
cord-289926-y1rjgbui	191	13	structure	structure	NN
cord-289926-y1rjgbui	191	14	to	to	IN
cord-289926-y1rjgbui	191	15	that	that	DT
cord-289926-y1rjgbui	191	16	of	of	IN
cord-289926-y1rjgbui	191	17	DNA	dna	NN
cord-289926-y1rjgbui	191	18	binding	binding	NN
cord-289926-y1rjgbui	191	19	domains	domain	NNS
cord-289926-y1rjgbui	191	20	:	:	:
cord-289926-y1rjgbui	191	21	ribosomal	ribosomal	JJ
cord-289926-y1rjgbui	191	22	protein	protein	NN
cord-289926-y1rjgbui	191	23	S7	S7	NNP
cord-289926-y1rjgbui	191	24	appears	appear	VBZ
cord-289926-y1rjgbui	191	25	to	to	TO
cord-289926-y1rjgbui	191	26	have	have	VB
cord-289926-y1rjgbui	191	27	a	a	DT
cord-289926-y1rjgbui	191	28	pair	pair	NN
cord-289926-y1rjgbui	191	29	of	of	IN
cord-289926-y1rjgbui	191	30	helix	helix	NN
cord-289926-y1rjgbui	191	31	-	-	HYPH
cord-289926-y1rjgbui	191	32	turn	turn	NN
cord-289926-y1rjgbui	191	33	-	-	HYPH
cord-289926-y1rjgbui	191	34	helix	helix	NN
cord-289926-y1rjgbui	191	35	motifs	motif	NNS
cord-289926-y1rjgbui	191	36	similar	similar	JJ
cord-289926-y1rjgbui	191	37	to	to	IN
cord-289926-y1rjgbui	191	38	DNA	dna	NN
cord-289926-y1rjgbui	191	39	architectural	architectural	JJ
cord-289926-y1rjgbui	191	40	factors	factor	NNS
cord-289926-y1rjgbui	191	41	[	[	-LRB-
cord-289926-y1rjgbui	191	42	28	28	CD
cord-289926-y1rjgbui	191	43	]	]	-RRB-
cord-289926-y1rjgbui	191	44	and	and	CC
cord-289926-y1rjgbui	191	45	the	the	DT
cord-289926-y1rjgbui	191	46	ribosomal	ribosomal	JJ
cord-289926-y1rjgbui	191	47	protein	protein	NN
cord-289926-y1rjgbui	191	48	L11	L11	NNP
cord-289926-y1rjgbui	191	49	contains	contain	VBZ
cord-289926-y1rjgbui	191	50	3	3	CD
cord-289926-y1rjgbui	192	1	␣	␣	NNP
cord-289926-y1rjgbui	192	2	-helices	-helices	.
cord-289926-y1rjgbui	193	1	and	and	CC
cord-289926-y1rjgbui	193	2	is	be	VBZ
cord-289926-y1rjgbui	193	3	similar	similar	JJ
cord-289926-y1rjgbui	193	4	to	to	IN
cord-289926-y1rjgbui	193	5	homeodomain	homeodomain	NNP
cord-289926-y1rjgbui	193	6	proteins	protein	NNS
cord-289926-y1rjgbui	193	7	[	[	-LRB-
cord-289926-y1rjgbui	193	8	50	50	CD
cord-289926-y1rjgbui	193	9	]	]	-RRB-
cord-289926-y1rjgbui	193	10	.	.	.
cord-289926-y1rjgbui	194	1	On	on	IN
cord-289926-y1rjgbui	194	2	the	the	DT
cord-289926-y1rjgbui	194	3	reciprocal	reciprocal	JJ
cord-289926-y1rjgbui	194	4	side	side	NN
cord-289926-y1rjgbui	194	5	,	,	,
cord-289926-y1rjgbui	194	6	the	the	DT
cord-289926-y1rjgbui	194	7	homeodomain	homeodomain	NN
cord-289926-y1rjgbui	194	8	of	of	IN
cord-289926-y1rjgbui	194	9	the	the	DT
cord-289926-y1rjgbui	194	10	Drosophila	Drosophila	NNP
cord-289926-y1rjgbui	194	11	bicoid	bicoid	NN
cord-289926-y1rjgbui	194	12	protein	protein	NN
cord-289926-y1rjgbui	194	13	has	have	VBZ
cord-289926-y1rjgbui	194	14	been	be	VBN
cord-289926-y1rjgbui	194	15	shown	show	VBN
cord-289926-y1rjgbui	194	16	to	to	TO
cord-289926-y1rjgbui	194	17	interact	interact	VB
cord-289926-y1rjgbui	194	18	in	in	IN
cord-289926-y1rjgbui	194	19	a	a	DT
cord-289926-y1rjgbui	194	20	sequence	sequence	NN
cord-289926-y1rjgbui	194	21	-	-	HYPH
cord-289926-y1rjgbui	194	22	specific	specific	JJ
cord-289926-y1rjgbui	194	23	manner	manner	NN
cord-289926-y1rjgbui	194	24	with	with	IN
cord-289926-y1rjgbui	194	25	3	3	CD
cord-289926-y1rjgbui	194	26	-untranslated	-untranslated	JJ
cord-289926-y1rjgbui	194	27	region	region	NN
cord-289926-y1rjgbui	194	28	of	of	IN
cord-289926-y1rjgbui	194	29	the	the	DT
cord-289926-y1rjgbui	194	30	caudal	caudal	JJ
cord-289926-y1rjgbui	194	31	gene	gene	NN
cord-289926-y1rjgbui	194	32	transcript	transcript	NN
cord-289926-y1rjgbui	194	33	[	[	-LRB-
cord-289926-y1rjgbui	194	34	6	6	CD
cord-289926-y1rjgbui	194	35	,	,	,
cord-289926-y1rjgbui	194	36	14	14	CD
cord-289926-y1rjgbui	194	37	]	]	-RRB-
cord-289926-y1rjgbui	194	38	.	.	.
cord-289926-y1rjgbui	195	1	Both	both	DT
cord-289926-y1rjgbui	195	2	DNA	dna	NN
cord-289926-y1rjgbui	195	3	-	-	HYPH
cord-289926-y1rjgbui	195	4	binding	binding	JJ
cord-289926-y1rjgbui	195	5	and	and	CC
cord-289926-y1rjgbui	195	6	RNA	rna	NN
cord-289926-y1rjgbui	195	7	-	-	HYPH
cord-289926-y1rjgbui	195	8	binding	bind	VBG
cord-289926-y1rjgbui	195	9	domains	domain	NNS
cord-289926-y1rjgbui	195	10	often	often	RB
cord-289926-y1rjgbui	195	11	interact	interact	VBP
cord-289926-y1rjgbui	195	12	with	with	IN
cord-289926-y1rjgbui	195	13	nucleic	nucleic	JJ
cord-289926-y1rjgbui	195	14	acids	acid	NNS
cord-289926-y1rjgbui	195	15	using	use	VBG
cord-289926-y1rjgbui	195	16	␣	␣	ADD
cord-289926-y1rjgbui	195	17	-helical	-helical	JJ
cord-289926-y1rjgbui	195	18	structures	structure	NNS
cord-289926-y1rjgbui	195	19	.	.	.
cord-289926-y1rjgbui	196	1	While	while	IN
cord-289926-y1rjgbui	196	2	both	both	CC
cord-289926-y1rjgbui	196	3	the	the	DT
cord-289926-y1rjgbui	196	4	major	major	JJ
cord-289926-y1rjgbui	196	5	and	and	CC
cord-289926-y1rjgbui	196	6	minor	minor	JJ
cord-289926-y1rjgbui	196	7	grooves	groove	NNS
cord-289926-y1rjgbui	196	8	of	of	IN
cord-289926-y1rjgbui	196	9	regular	regular	JJ
cord-289926-y1rjgbui	196	10	A	a	DT
cord-289926-y1rjgbui	196	11	-	-	HYPH
cord-289926-y1rjgbui	196	12	form	form	NN
cord-289926-y1rjgbui	196	13	RNA	RNA	NNP
cord-289926-y1rjgbui	196	14	are	be	VBP
cord-289926-y1rjgbui	196	15	too	too	RB
cord-289926-y1rjgbui	196	16	narrow	narrow	JJ
cord-289926-y1rjgbui	196	17	to	to	TO
cord-289926-y1rjgbui	196	18	permit	permit	VB
cord-289926-y1rjgbui	196	19	a	a	DT
cord-289926-y1rjgbui	196	20	direct	direct	JJ
cord-289926-y1rjgbui	196	21	interaction	interaction	NN
cord-289926-y1rjgbui	196	22	with	with	IN
cord-289926-y1rjgbui	196	23	an	an	DT
cord-289926-y1rjgbui	196	24	␣	␣	NN
cord-289926-y1rjgbui	196	25	-helix	-helix	NN
cord-289926-y1rjgbui	196	26	,	,	,
cord-289926-y1rjgbui	196	27	bulges	bulge	NNS
cord-289926-y1rjgbui	196	28	and	and	CC
cord-289926-y1rjgbui	196	29	mismatches	mismatch	NNS
cord-289926-y1rjgbui	196	30	considerably	considerably	RB
cord-289926-y1rjgbui	196	31	alter	alter	VBP
cord-289926-y1rjgbui	196	32	the	the	DT
cord-289926-y1rjgbui	196	33	groove	groove	NN
cord-289926-y1rjgbui	196	34	dimensions	dimension	NNS
cord-289926-y1rjgbui	196	35	allowing	allow	VBG
cord-289926-y1rjgbui	196	36	sufficient	sufficient	JJ
cord-289926-y1rjgbui	196	37	contact	contact	NN
cord-289926-y1rjgbui	196	38	surface	surface	NN
cord-289926-y1rjgbui	196	39	with	with	IN
cord-289926-y1rjgbui	196	40	an	an	DT
cord-289926-y1rjgbui	196	41	␣	␣	NN
cord-289926-y1rjgbui	196	42	-helix	-helix	JJ
cord-289926-y1rjgbui	196	43	[	[	-LRB-
cord-289926-y1rjgbui	196	44	41	41	CD
cord-289926-y1rjgbui	196	45	]	]	-RRB-
cord-289926-y1rjgbui	196	46	.	.	.
cord-289926-y1rjgbui	197	1	The	the	DT
cord-289926-y1rjgbui	197	2	HMG	HMG	NNP
cord-289926-y1rjgbui	197	3	box	box	NN
cord-289926-y1rjgbui	197	4	has	have	VBZ
cord-289926-y1rjgbui	197	5	not	not	RB
cord-289926-y1rjgbui	197	6	been	be	VBN
cord-289926-y1rjgbui	197	7	reported	report	VBN
cord-289926-y1rjgbui	197	8	to	to	TO
cord-289926-y1rjgbui	197	9	bind	bind	VB
cord-289926-y1rjgbui	197	10	RNA	RNA	NNP
cord-289926-y1rjgbui	197	11	,	,	,
cord-289926-y1rjgbui	197	12	however	however	RB
cord-289926-y1rjgbui	197	13	it	-PRON-	PRP
cord-289926-y1rjgbui	197	14	binds	bind	VBZ
cord-289926-y1rjgbui	197	15	both	both	CC
cord-289926-y1rjgbui	197	16	double	double	JJ
cord-289926-y1rjgbui	197	17	-	-	HYPH
cord-289926-y1rjgbui	197	18	and	and	CC
cord-289926-y1rjgbui	197	19	single	single	RB
cord-289926-y1rjgbui	197	20	-	-	HYPH
cord-289926-y1rjgbui	197	21	stranded	strand	VBN
cord-289926-y1rjgbui	197	22	DNA	dna	NN
cord-289926-y1rjgbui	197	23	[	[	-LRB-
cord-289926-y1rjgbui	197	24	16	16	CD
cord-289926-y1rjgbui	197	25	]	]	-RRB-
cord-289926-y1rjgbui	197	26	.	.	.
cord-289926-y1rjgbui	198	1	Proteins	protein	NNS
cord-289926-y1rjgbui	198	2	containing	contain	VBG
cord-289926-y1rjgbui	198	3	an	an	DT
cord-289926-y1rjgbui	198	4	HMG	HMG	NNP
cord-289926-y1rjgbui	198	5	domain	domain	NN
cord-289926-y1rjgbui	198	6	have	have	VBP
cord-289926-y1rjgbui	198	7	widely	widely	RB
cord-289926-y1rjgbui	198	8	diverse	diverse	JJ
cord-289926-y1rjgbui	198	9	cellular	cellular	JJ
cord-289926-y1rjgbui	198	10	roles	role	NNS
cord-289926-y1rjgbui	198	11	,	,	,
cord-289926-y1rjgbui	198	12	indicating	indicate	VBG
cord-289926-y1rjgbui	198	13	that	that	IN
cord-289926-y1rjgbui	198	14	an	an	DT
cord-289926-y1rjgbui	198	15	HMG	HMG	NNP
cord-289926-y1rjgbui	198	16	domain	domain	NN
cord-289926-y1rjgbui	198	17	participates	participate	VBZ
cord-289926-y1rjgbui	198	18	in	in	IN
cord-289926-y1rjgbui	198	19	a	a	DT
cord-289926-y1rjgbui	198	20	variety	variety	NN
cord-289926-y1rjgbui	198	21	of	of	IN
cord-289926-y1rjgbui	198	22	DNA	dna	NN
cord-289926-y1rjgbui	198	23	-	-	HYPH
cord-289926-y1rjgbui	198	24	protein	protein	NN
cord-289926-y1rjgbui	198	25	interactions	interaction	NNS
cord-289926-y1rjgbui	198	26	.	.	.
cord-289926-y1rjgbui	199	1	It	-PRON-	PRP
cord-289926-y1rjgbui	199	2	is	be	VBZ
cord-289926-y1rjgbui	199	3	conceivable	conceivable	JJ
cord-289926-y1rjgbui	199	4	that	that	IN
cord-289926-y1rjgbui	199	5	the	the	DT
cord-289926-y1rjgbui	199	6	wide	wide	JJ
cord-289926-y1rjgbui	199	7	DNA	dna	NN
cord-289926-y1rjgbui	199	8	-	-	HYPH
cord-289926-y1rjgbui	199	9	binding	bind	VBG
cord-289926-y1rjgbui	199	10	range	range	NN
cord-289926-y1rjgbui	199	11	of	of	IN
cord-289926-y1rjgbui	199	12	the	the	DT
cord-289926-y1rjgbui	199	13	HMG	HMG	NNP
cord-289926-y1rjgbui	199	14	domain	domain	NN
cord-289926-y1rjgbui	199	15	could	could	MD
cord-289926-y1rjgbui	199	16	extend	extend	VB
cord-289926-y1rjgbui	199	17	to	to	IN
cord-289926-y1rjgbui	199	18	RNA	RNA	NNP
cord-289926-y1rjgbui	199	19	-	-	HYPH
cord-289926-y1rjgbui	199	20	binding	binding	NN
cord-289926-y1rjgbui	199	21	,	,	,
cord-289926-y1rjgbui	199	22	especially	especially	RB
cord-289926-y1rjgbui	199	23	considering	consider	VBG
cord-289926-y1rjgbui	199	24	the	the	DT
cord-289926-y1rjgbui	199	25	high	high	JJ
cord-289926-y1rjgbui	199	26	rates	rate	NNS
cord-289926-y1rjgbui	199	27	of	of	IN
cord-289926-y1rjgbui	199	28	mutation	mutation	NN
cord-289926-y1rjgbui	199	29	and	and	CC
cord-289926-y1rjgbui	199	30	selection	selection	NN
cord-289926-y1rjgbui	199	31	existing	exist	VBG
cord-289926-y1rjgbui	199	32	in	in	IN
cord-289926-y1rjgbui	199	33	the	the	DT
cord-289926-y1rjgbui	199	34	virus	virus	NN
cord-289926-y1rjgbui	199	35	.	.	.
cord-289926-y1rjgbui	200	1	The	the	DT
cord-289926-y1rjgbui	200	2	basic	basic	JJ
cord-289926-y1rjgbui	200	3	stretches	stretch	NNS
cord-289926-y1rjgbui	200	4	of	of	IN
cord-289926-y1rjgbui	200	5	the	the	DT
cord-289926-y1rjgbui	200	6	RNA	RNA	NNP
cord-289926-y1rjgbui	200	7	-	-	HYPH
cord-289926-y1rjgbui	200	8	binding	bind	VBG
cord-289926-y1rjgbui	200	9	domain	domain	NN
cord-289926-y1rjgbui	200	10	are	be	VBP
cord-289926-y1rjgbui	200	11	similar	similar	JJ
cord-289926-y1rjgbui	200	12	to	to	IN
cord-289926-y1rjgbui	200	13	the	the	DT
cord-289926-y1rjgbui	200	14	argininerich	argininerich	NNP
cord-289926-y1rjgbui	200	15	motifs	motif	NNS
cord-289926-y1rjgbui	200	16	(	(	-LRB-
cord-289926-y1rjgbui	200	17	ARMs	arm	NNS
cord-289926-y1rjgbui	200	18	)	)	-RRB-
cord-289926-y1rjgbui	200	19	found	find	VBN
cord-289926-y1rjgbui	200	20	in	in	IN
cord-289926-y1rjgbui	200	21	the	the	DT
cord-289926-y1rjgbui	200	22	products	product	NNS
cord-289926-y1rjgbui	200	23	of	of	IN
cord-289926-y1rjgbui	200	24	the	the	DT
cord-289926-y1rjgbui	200	25	HIV	HIV	NNP
cord-289926-y1rjgbui	200	26	tat	tat	NNP
cord-289926-y1rjgbui	200	27	and	and	CC
cord-289926-y1rjgbui	200	28	rev	rev	NNP
cord-289926-y1rjgbui	200	29	genes	gene	NNS
cord-289926-y1rjgbui	200	30	,	,	,
cord-289926-y1rjgbui	200	31	bacterial	bacterial	JJ
cord-289926-y1rjgbui	200	32	antiterminators	antiterminator	NNS
cord-289926-y1rjgbui	200	33	and	and	CC
cord-289926-y1rjgbui	200	34	coat	coat	NN
cord-289926-y1rjgbui	200	35	proteins	protein	NNS
cord-289926-y1rjgbui	200	36	from	from	IN
cord-289926-y1rjgbui	200	37	the	the	DT
cord-289926-y1rjgbui	200	38	RNA	RNA	NNP
cord-289926-y1rjgbui	200	39	viruses	virus	NNS
cord-289926-y1rjgbui	200	40	[	[	-LRB-
cord-289926-y1rjgbui	200	41	45	45	CD
cord-289926-y1rjgbui	200	42	]	]	-RRB-
cord-289926-y1rjgbui	200	43	.	.	.
cord-289926-y1rjgbui	201	1	Short	short	JJ
cord-289926-y1rjgbui	201	2	arginine	arginine	NN
cord-289926-y1rjgbui	201	3	-	-	HYPH
cord-289926-y1rjgbui	201	4	rich	rich	JJ
cord-289926-y1rjgbui	201	5	stretches	stretch	NNS
cord-289926-y1rjgbui	201	6	tend	tend	VBP
cord-289926-y1rjgbui	201	7	to	to	TO
cord-289926-y1rjgbui	201	8	form	form	VB
cord-289926-y1rjgbui	201	9	␣	␣	CD
cord-289926-y1rjgbui	201	10	-helical	-helical	JJ
cord-289926-y1rjgbui	201	11	structures	structure	NNS
cord-289926-y1rjgbui	201	12	,	,	,
cord-289926-y1rjgbui	201	13	which	which	WDT
cord-289926-y1rjgbui	201	14	can	can	MD
cord-289926-y1rjgbui	201	15	bind	bind	VB
cord-289926-y1rjgbui	201	16	in	in	IN
cord-289926-y1rjgbui	201	17	the	the	DT
cord-289926-y1rjgbui	201	18	wide	wide	JJ
cord-289926-y1rjgbui	201	19	groove	groove	NN
cord-289926-y1rjgbui	201	20	of	of	IN
cord-289926-y1rjgbui	201	21	RNA	RNA	NNP
cord-289926-y1rjgbui	201	22	close	close	RB
cord-289926-y1rjgbui	201	23	to	to	IN
cord-289926-y1rjgbui	201	24	loops	loop	NNS
cord-289926-y1rjgbui	201	25	or	or	CC
cord-289926-y1rjgbui	201	26	large	large	JJ
cord-289926-y1rjgbui	201	27	bulges	bulge	NNS
cord-289926-y1rjgbui	201	28	.	.	.
cord-289926-y1rjgbui	202	1	Only	only	RB
cord-289926-y1rjgbui	202	2	one	one	CD
cord-289926-y1rjgbui	202	3	ARM	arm	NN
cord-289926-y1rjgbui	202	4	is	be	VBZ
cord-289926-y1rjgbui	202	5	usually	usually	RB
cord-289926-y1rjgbui	202	6	necessary	necessary	JJ
cord-289926-y1rjgbui	202	7	for	for	IN
cord-289926-y1rjgbui	202	8	binding	bind	VBG
cord-289926-y1rjgbui	202	9	;	;	:
cord-289926-y1rjgbui	202	10	an	an	DT
cord-289926-y1rjgbui	202	11	arginine	arginine	NN
cord-289926-y1rjgbui	202	12	-	-	HYPH
cord-289926-y1rjgbui	202	13	rich	rich	JJ
cord-289926-y1rjgbui	202	14	peptide	peptide	NN
cord-289926-y1rjgbui	202	15	as	as	RB
cord-289926-y1rjgbui	202	16	short	short	JJ
cord-289926-y1rjgbui	202	17	as	as	IN
cord-289926-y1rjgbui	202	18	17	17	CD
cord-289926-y1rjgbui	202	19	residues	residue	NNS
cord-289926-y1rjgbui	202	20	was	be	VBD
cord-289926-y1rjgbui	202	21	shown	show	VBN
cord-289926-y1rjgbui	202	22	to	to	TO
cord-289926-y1rjgbui	202	23	bind	bind	VB
cord-289926-y1rjgbui	202	24	specifically	specifically	RB
cord-289926-y1rjgbui	202	25	to	to	IN
cord-289926-y1rjgbui	202	26	RNA	RNA	NNP
cord-289926-y1rjgbui	202	27	[	[	-LRB-
cord-289926-y1rjgbui	202	28	44	44	CD
cord-289926-y1rjgbui	202	29	,	,	,
cord-289926-y1rjgbui	202	30	45	45	CD
cord-289926-y1rjgbui	202	31	]	]	-RRB-
cord-289926-y1rjgbui	202	32	.	.	.
cord-289926-y1rjgbui	203	1	HDAg	HDAg	NNP
cord-289926-y1rjgbui	203	2	is	be	VBZ
cord-289926-y1rjgbui	203	3	unique	unique	JJ
cord-289926-y1rjgbui	203	4	in	in	IN
cord-289926-y1rjgbui	203	5	that	that	IN
cord-289926-y1rjgbui	203	6	it	-PRON-	PRP
cord-289926-y1rjgbui	203	7	requires	require	VBZ
cord-289926-y1rjgbui	203	8	two	two	CD
cord-289926-y1rjgbui	203	9	ARMs	arm	NNS
cord-289926-y1rjgbui	203	10	instead	instead	RB
cord-289926-y1rjgbui	203	11	of	of	IN
cord-289926-y1rjgbui	203	12	one	one	CD
cord-289926-y1rjgbui	203	13	;	;	:
cord-289926-y1rjgbui	203	14	moreover	moreover	RB
cord-289926-y1rjgbui	203	15	,	,	,
cord-289926-y1rjgbui	203	16	the	the	DT
cord-289926-y1rjgbui	203	17	spacer	spacer	NN
cord-289926-y1rjgbui	203	18	between	between	IN
cord-289926-y1rjgbui	203	19	the	the	DT
cord-289926-y1rjgbui	203	20	ARMs	arm	NNS
cord-289926-y1rjgbui	203	21	(	(	-LRB-
cord-289926-y1rjgbui	203	22	leucine	leucine	NNP
cord-289926-y1rjgbui	203	23	zipper	zipper	NN
cord-289926-y1rjgbui	203	24	)	)	-RRB-
cord-289926-y1rjgbui	203	25	is	be	VBZ
cord-289926-y1rjgbui	203	26	essential	essential	JJ
cord-289926-y1rjgbui	203	27	as	as	RB
cord-289926-y1rjgbui	203	28	well	well	RB
cord-289926-y1rjgbui	203	29	[	[	-LRB-
cord-289926-y1rjgbui	203	30	30	30	CD
cord-289926-y1rjgbui	203	31	,	,	,
cord-289926-y1rjgbui	203	32	32	32	CD
cord-289926-y1rjgbui	203	33	]	]	-RRB-
cord-289926-y1rjgbui	203	34	.	.	.
cord-289926-y1rjgbui	204	1	We	-PRON-	PRP
cord-289926-y1rjgbui	204	2	therefore	therefore	RB
cord-289926-y1rjgbui	204	3	think	think	VBP
cord-289926-y1rjgbui	204	4	that	that	IN
cord-289926-y1rjgbui	204	5	each	each	DT
cord-289926-y1rjgbui	204	6	ARM	arm	NN
cord-289926-y1rjgbui	204	7	constitutes	constitute	VBZ
cord-289926-y1rjgbui	204	8	only	only	RB
cord-289926-y1rjgbui	204	9	a	a	DT
cord-289926-y1rjgbui	204	10	part	part	NN
cord-289926-y1rjgbui	204	11	of	of	IN
cord-289926-y1rjgbui	204	12	the	the	DT
cord-289926-y1rjgbui	204	13	RNA	RNA	NNP
cord-289926-y1rjgbui	204	14	-	-	HYPH
cord-289926-y1rjgbui	204	15	binding	bind	VBG
cord-289926-y1rjgbui	204	16	motif	motif	NN
cord-289926-y1rjgbui	204	17	,	,	,
cord-289926-y1rjgbui	204	18	the	the	DT
cord-289926-y1rjgbui	204	19	entire	entire	JJ
cord-289926-y1rjgbui	204	20	motif	motif	NN
cord-289926-y1rjgbui	204	21	being	be	VBG
cord-289926-y1rjgbui	204	22	defined	define	VBN
cord-289926-y1rjgbui	204	23	by	by	IN
cord-289926-y1rjgbui	204	24	its	-PRON-	PRP$
cord-289926-y1rjgbui	204	25	alignment	alignment	NN
cord-289926-y1rjgbui	204	26	with	with	IN
cord-289926-y1rjgbui	204	27	the	the	DT
cord-289926-y1rjgbui	204	28	HMG	HMG	NNP
cord-289926-y1rjgbui	204	29	box	box	NN
cord-289926-y1rjgbui	204	30	.	.	.
cord-289926-y1rjgbui	205	1	It	-PRON-	PRP
cord-289926-y1rjgbui	205	2	is	be	VBZ
cord-289926-y1rjgbui	205	3	not	not	RB
cord-289926-y1rjgbui	205	4	clear	clear	JJ
cord-289926-y1rjgbui	205	5	whether	whether	IN
cord-289926-y1rjgbui	205	6	the	the	DT
cord-289926-y1rjgbui	205	7	ARM	arm	NN
cord-289926-y1rjgbui	205	8	regions	region	NNS
cord-289926-y1rjgbui	205	9	within	within	IN
cord-289926-y1rjgbui	205	10	the	the	DT
cord-289926-y1rjgbui	205	11	RNA	RNA	NNP
cord-289926-y1rjgbui	205	12	-	-	HYPH
cord-289926-y1rjgbui	205	13	binding	bind	VBG
cord-289926-y1rjgbui	205	14	domain	domain	NN
cord-289926-y1rjgbui	205	15	of	of	IN
cord-289926-y1rjgbui	205	16	HDAg	HDAg	NNS
cord-289926-y1rjgbui	205	17	are	be	VBP
cord-289926-y1rjgbui	205	18	evolutionarily	evolutionarily	RB
cord-289926-y1rjgbui	205	19	related	related	JJ
cord-289926-y1rjgbui	205	20	to	to	IN
cord-289926-y1rjgbui	205	21	'	'	``
cord-289926-y1rjgbui	205	22	classic	classic	JJ
cord-289926-y1rjgbui	205	23	'	'	''
cord-289926-y1rjgbui	205	24	ARMs	arm	NNS
cord-289926-y1rjgbui	205	25	or	or	CC
cord-289926-y1rjgbui	205	26	whether	whether	IN
cord-289926-y1rjgbui	205	27	the	the	DT
cord-289926-y1rjgbui	205	28	sequence	sequence	NN
cord-289926-y1rjgbui	205	29	similarity	similarity	NN
cord-289926-y1rjgbui	205	30	is	be	VBZ
cord-289926-y1rjgbui	205	31	a	a	DT
cord-289926-y1rjgbui	205	32	consequence	consequence	NN
cord-289926-y1rjgbui	205	33	of	of	IN
cord-289926-y1rjgbui	205	34	the	the	DT
cord-289926-y1rjgbui	205	35	functional	functional	JJ
cord-289926-y1rjgbui	205	36	and	and	CC
cord-289926-y1rjgbui	205	37	structural	structural	JJ
cord-289926-y1rjgbui	205	38	constrains	constrain	NNS
cord-289926-y1rjgbui	205	39	imposed	impose	VBN
cord-289926-y1rjgbui	205	40	on	on	IN
cord-289926-y1rjgbui	205	41	the	the	DT
cord-289926-y1rjgbui	205	42	RNA	RNA	NNP
cord-289926-y1rjgbui	205	43	/	/	SYM
cord-289926-y1rjgbui	205	44	DNA	dna	NN
cord-289926-y1rjgbui	205	45	-	-	HYPH
cord-289926-y1rjgbui	205	46	binding	bind	VBG
cord-289926-y1rjgbui	205	47	domain	domain	NN
cord-289926-y1rjgbui	205	48	.	.	.
cord-289926-y1rjgbui	206	1	Alignments	alignment	NNS
cord-289926-y1rjgbui	206	2	of	of	IN
cord-289926-y1rjgbui	206	3	HDAg	HDAg	NNS
cord-289926-y1rjgbui	206	4	and	and	CC
cord-289926-y1rjgbui	206	5	ARM	arm	NN
cord-289926-y1rjgbui	206	6	-	-	HYPH
cord-289926-y1rjgbui	206	7	containing	contain	VBG
cord-289926-y1rjgbui	206	8	sequences	sequence	NNS
cord-289926-y1rjgbui	206	9	such	such	JJ
cord-289926-y1rjgbui	206	10	as	as	IN
cord-289926-y1rjgbui	206	11	rev	rev	NNP
cord-289926-y1rjgbui	206	12	and	and	CC
cord-289926-y1rjgbui	206	13	tat	tat	NNP
cord-289926-y1rjgbui	206	14	show	show	VBP
cord-289926-y1rjgbui	206	15	moderately	moderately	RB
cord-289926-y1rjgbui	206	16	high	high	JJ
cord-289926-y1rjgbui	206	17	levels	level	NNS
cord-289926-y1rjgbui	206	18	of	of	IN
cord-289926-y1rjgbui	206	19	similarity	similarity	NN
cord-289926-y1rjgbui	206	20	,	,	,
cord-289926-y1rjgbui	206	21	but	but	CC
cord-289926-y1rjgbui	206	22	it	-PRON-	PRP
cord-289926-y1rjgbui	206	23	is	be	VBZ
cord-289926-y1rjgbui	206	24	interspersed	intersperse	VBN
cord-289926-y1rjgbui	206	25	across	across	IN
cord-289926-y1rjgbui	206	26	the	the	DT
cord-289926-y1rjgbui	206	27	entire	entire	JJ
cord-289926-y1rjgbui	206	28	sequence	sequence	NN
cord-289926-y1rjgbui	206	29	and	and	CC
cord-289926-y1rjgbui	206	30	no	no	DT
cord-289926-y1rjgbui	206	31	continuous	continuous	JJ
cord-289926-y1rjgbui	206	32	stretches	stretch	NNS
cord-289926-y1rjgbui	206	33	of	of	IN
cord-289926-y1rjgbui	206	34	similarity	similarity	NN
cord-289926-y1rjgbui	206	35	were	be	VBD
cord-289926-y1rjgbui	206	36	found	find	VBN
cord-289926-y1rjgbui	206	37	with	with	IN
cord-289926-y1rjgbui	206	38	the	the	DT
cord-289926-y1rjgbui	206	39	ARM	arm	NN
cord-289926-y1rjgbui	206	40	domains	domain	NNS
cord-289926-y1rjgbui	206	41	of	of	IN
cord-289926-y1rjgbui	206	42	HDAg	HDAg	NNS
cord-289926-y1rjgbui	206	43	.	.	.
cord-289926-y1rjgbui	207	1	The	the	DT
cord-289926-y1rjgbui	207	2	most	most	RBS
cord-289926-y1rjgbui	207	3	extended	extended	JJ
cord-289926-y1rjgbui	207	4	similarity	similarity	NN
cord-289926-y1rjgbui	207	5	found	find	VBN
cord-289926-y1rjgbui	207	6	between	between	IN
cord-289926-y1rjgbui	207	7	the	the	DT
cord-289926-y1rjgbui	207	8	HIV	HIV	NNP
cord-289926-y1rjgbui	207	9	rev	rev	NNP
cord-289926-y1rjgbui	207	10	gene	gene	NN
cord-289926-y1rjgbui	207	11	and	and	CC
cord-289926-y1rjgbui	207	12	the	the	DT
cord-289926-y1rjgbui	207	13	HDAg	hdag	NN
cord-289926-y1rjgbui	207	14	is	be	VBZ
cord-289926-y1rjgbui	207	15	outside	outside	RB
cord-289926-y1rjgbui	207	16	of	of	IN
cord-289926-y1rjgbui	207	17	the	the	DT
cord-289926-y1rjgbui	207	18	RNA	RNA	NNP
cord-289926-y1rjgbui	207	19	binding	binding	NN
cord-289926-y1rjgbui	207	20	domain	domain	NN
cord-289926-y1rjgbui	207	21	of	of	IN
cord-289926-y1rjgbui	207	22	HDAg	hdag	NN
cord-289926-y1rjgbui	207	23	(	(	-LRB-
cord-289926-y1rjgbui	207	24	Fig	Fig	NNP
cord-289926-y1rjgbui	207	25	.	.	.
cord-289926-y1rjgbui	207	26	2F	2F	NNP
cord-289926-y1rjgbui	207	27	)	)	-RRB-
cord-289926-y1rjgbui	207	28	.	.	.
cord-289926-y1rjgbui	208	1	Homology	homology	NN
cord-289926-y1rjgbui	208	2	of	of	IN
cord-289926-y1rjgbui	208	3	HDAg	HDAg	NNS
cord-289926-y1rjgbui	208	4	and	and	CC
cord-289926-y1rjgbui	208	5	the	the	DT
cord-289926-y1rjgbui	208	6	DNA	dna	NN
cord-289926-y1rjgbui	208	7	-	-	HYPH
cord-289926-y1rjgbui	208	8	binding	bind	VBG
cord-289926-y1rjgbui	208	9	domain	domain	NN
cord-289926-y1rjgbui	208	10	of	of	IN
cord-289926-y1rjgbui	208	11	HMG	HMG	NNP
cord-289926-y1rjgbui	208	12	box	box	NN
cord-289926-y1rjgbui	208	13	may	may	MD
cord-289926-y1rjgbui	208	14	give	give	VB
cord-289926-y1rjgbui	208	15	insight	insight	NN
cord-289926-y1rjgbui	208	16	into	into	IN
cord-289926-y1rjgbui	208	17	the	the	DT
cord-289926-y1rjgbui	208	18	mechanism	mechanism	NN
cord-289926-y1rjgbui	208	19	of	of	IN
cord-289926-y1rjgbui	208	20	neoplastic	neoplastic	JJ
cord-289926-y1rjgbui	208	21	transformation	transformation	NN
cord-289926-y1rjgbui	208	22	and	and	CC
cord-289926-y1rjgbui	208	23	progression	progression	NN
cord-289926-y1rjgbui	208	24	toward	toward	IN
cord-289926-y1rjgbui	208	25	cirrhosis	cirrhosis	NN
cord-289926-y1rjgbui	208	26	frequently	frequently	RB
cord-289926-y1rjgbui	208	27	observed	observe	VBD
cord-289926-y1rjgbui	208	28	in	in	IN
cord-289926-y1rjgbui	208	29	chronic	chronic	JJ
cord-289926-y1rjgbui	208	30	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	208	31	infection	infection	NN
cord-289926-y1rjgbui	208	32	[	[	-LRB-
cord-289926-y1rjgbui	208	33	18	18	CD
cord-289926-y1rjgbui	208	34	]	]	-RRB-
cord-289926-y1rjgbui	208	35	.	.	.
cord-289926-y1rjgbui	209	1	It	-PRON-	PRP
cord-289926-y1rjgbui	209	2	is	be	VBZ
cord-289926-y1rjgbui	209	3	possible	possible	JJ
cord-289926-y1rjgbui	209	4	that	that	IN
cord-289926-y1rjgbui	209	5	the	the	DT
cord-289926-y1rjgbui	209	6	RNA	RNA	NNP
cord-289926-y1rjgbui	209	7	-	-	HYPH
cord-289926-y1rjgbui	209	8	binding	bind	VBG
cord-289926-y1rjgbui	209	9	domain	domain	NN
cord-289926-y1rjgbui	209	10	of	of	IN
cord-289926-y1rjgbui	209	11	HDAg	hdag	NN
cord-289926-y1rjgbui	209	12	has	have	VBZ
cord-289926-y1rjgbui	209	13	retained	retain	VBN
cord-289926-y1rjgbui	209	14	some	some	DT
cord-289926-y1rjgbui	209	15	of	of	IN
cord-289926-y1rjgbui	209	16	the	the	DT
cord-289926-y1rjgbui	209	17	DNA	dna	NN
cord-289926-y1rjgbui	209	18	-	-	HYPH
cord-289926-y1rjgbui	209	19	binding	bind	VBG
cord-289926-y1rjgbui	209	20	capability	capability	NN
cord-289926-y1rjgbui	209	21	of	of	IN
cord-289926-y1rjgbui	209	22	its	-PRON-	PRP$
cord-289926-y1rjgbui	209	23	ancestral	ancestral	JJ
cord-289926-y1rjgbui	209	24	HMG	HMG	NNP
cord-289926-y1rjgbui	209	25	box	box	NN
cord-289926-y1rjgbui	209	26	and	and	CC
cord-289926-y1rjgbui	209	27	thus	thus	RB
cord-289926-y1rjgbui	209	28	could	could	MD
cord-289926-y1rjgbui	209	29	activate	activate	VB
cord-289926-y1rjgbui	209	30	cellular	cellular	JJ
cord-289926-y1rjgbui	209	31	proto	proto	JJ
cord-289926-y1rjgbui	209	32	-	-	HYPH
cord-289926-y1rjgbui	209	33	oncogenes	oncogene	NNS
cord-289926-y1rjgbui	209	34	.	.	.
cord-289926-y1rjgbui	210	1	It	-PRON-	PRP
cord-289926-y1rjgbui	210	2	has	have	VBZ
cord-289926-y1rjgbui	210	3	been	be	VBN
cord-289926-y1rjgbui	210	4	shown	show	VBN
cord-289926-y1rjgbui	210	5	that	that	IN
cord-289926-y1rjgbui	210	6	the	the	DT
cord-289926-y1rjgbui	210	7	HMG	HMG	NNP
cord-289926-y1rjgbui	210	8	box	box	NN
cord-289926-y1rjgbui	210	9	of	of	IN
cord-289926-y1rjgbui	210	10	the	the	DT
cord-289926-y1rjgbui	210	11	SRY	SRY	NNP
cord-289926-y1rjgbui	210	12	protein	protein	NN
cord-289926-y1rjgbui	210	13	is	be	VBZ
cord-289926-y1rjgbui	210	14	involved	involve	VBN
cord-289926-y1rjgbui	210	15	in	in	IN
cord-289926-y1rjgbui	210	16	specific	specific	JJ
cord-289926-y1rjgbui	210	17	binding	binding	NN
cord-289926-y1rjgbui	210	18	and	and	CC
cord-289926-y1rjgbui	210	19	regulation	regulation	NN
cord-289926-y1rjgbui	210	20	of	of	IN
cord-289926-y1rjgbui	210	21	the	the	DT
cord-289926-y1rjgbui	210	22	expression	expression	NN
cord-289926-y1rjgbui	210	23	of	of	IN
cord-289926-y1rjgbui	210	24	the	the	DT
cord-289926-y1rjgbui	210	25	cellular	cellular	JJ
cord-289926-y1rjgbui	210	26	proto	proto	JJ
cord-289926-y1rjgbui	210	27	-	-	HYPH
cord-289926-y1rjgbui	210	28	oncogene	oncogene	NN
cord-289926-y1rjgbui	210	29	c	c	NN
cord-289926-y1rjgbui	210	30	-	-	HYPH
cord-289926-y1rjgbui	210	31	fos	fos	NNP
cord-289926-y1rjgbui	210	32	-FRA1	-FRA1	NNP
cord-289926-y1rjgbui	210	33	[	[	-LRB-
cord-289926-y1rjgbui	210	34	10	10	CD
cord-289926-y1rjgbui	210	35	]	]	-RRB-
cord-289926-y1rjgbui	210	36	.	.	.
cord-289926-y1rjgbui	211	1	The	the	DT
cord-289926-y1rjgbui	211	2	RNA	RNA	NNP
cord-289926-y1rjgbui	211	3	binding	binding	NN
cord-289926-y1rjgbui	211	4	domain	domain	NN
cord-289926-y1rjgbui	211	5	of	of	IN
cord-289926-y1rjgbui	211	6	HDAg	HDAg	NNS
cord-289926-y1rjgbui	211	7	may	may	MD
cord-289926-y1rjgbui	211	8	be	be	VB
cord-289926-y1rjgbui	211	9	capable	capable	JJ
cord-289926-y1rjgbui	211	10	of	of	IN
cord-289926-y1rjgbui	211	11	similar	similar	JJ
cord-289926-y1rjgbui	211	12	binding	binding	NN
cord-289926-y1rjgbui	211	13	.	.	.
cord-289926-y1rjgbui	212	1	While	while	IN
cord-289926-y1rjgbui	212	2	the	the	DT
cord-289926-y1rjgbui	212	3	specificity	specificity	NN
cord-289926-y1rjgbui	212	4	of	of	IN
cord-289926-y1rjgbui	212	5	such	such	JJ
cord-289926-y1rjgbui	212	6	DNA	dna	NN
cord-289926-y1rjgbui	212	7	binding	binding	NN
cord-289926-y1rjgbui	212	8	by	by	IN
cord-289926-y1rjgbui	212	9	HDAg	HDAg	NNS
cord-289926-y1rjgbui	212	10	is	be	VBZ
cord-289926-y1rjgbui	212	11	likely	likely	JJ
cord-289926-y1rjgbui	212	12	to	to	TO
cord-289926-y1rjgbui	212	13	be	be	VB
cord-289926-y1rjgbui	212	14	lower	low	JJR
cord-289926-y1rjgbui	212	15	than	than	IN
cord-289926-y1rjgbui	212	16	that	that	DT
cord-289926-y1rjgbui	212	17	of	of	IN
cord-289926-y1rjgbui	212	18	a	a	DT
cord-289926-y1rjgbui	212	19	true	true	JJ
cord-289926-y1rjgbui	212	20	transcription	transcription	NN
cord-289926-y1rjgbui	212	21	factor	factor	NN
cord-289926-y1rjgbui	212	22	,	,	,
cord-289926-y1rjgbui	212	23	the	the	DT
cord-289926-y1rjgbui	212	24	sheer	sheer	JJ
cord-289926-y1rjgbui	212	25	abundance	abundance	NN
cord-289926-y1rjgbui	212	26	and	and	CC
cord-289926-y1rjgbui	212	27	persistence	persistence	NN
cord-289926-y1rjgbui	212	28	of	of	IN
cord-289926-y1rjgbui	212	29	the	the	DT
cord-289926-y1rjgbui	212	30	antigen	antigen	NN
cord-289926-y1rjgbui	212	31	during	during	IN
cord-289926-y1rjgbui	212	32	chronic	chronic	JJ
cord-289926-y1rjgbui	212	33	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	212	34	infection	infection	NN
cord-289926-y1rjgbui	212	35	,	,	,
cord-289926-y1rjgbui	212	36	as	as	RB
cord-289926-y1rjgbui	212	37	well	well	RB
cord-289926-y1rjgbui	212	38	as	as	IN
cord-289926-y1rjgbui	212	39	the	the	DT
cord-289926-y1rjgbui	212	40	evolution	evolution	NN
cord-289926-y1rjgbui	212	41	of	of	IN
cord-289926-y1rjgbui	212	42	the	the	DT
cord-289926-y1rjgbui	212	43	HDV	HDV	NNP
cord-289926-y1rjgbui	212	44	genome	genome	NN
cord-289926-y1rjgbui	212	45	throughout	throughout	IN
cord-289926-y1rjgbui	212	46	the	the	DT
cord-289926-y1rjgbui	212	47	course	course	NN
cord-289926-y1rjgbui	212	48	of	of	IN
cord-289926-y1rjgbui	212	49	infection	infection	NN
cord-289926-y1rjgbui	212	50	[	[	-LRB-
cord-289926-y1rjgbui	212	51	30	30	CD
cord-289926-y1rjgbui	212	52	,	,	,
cord-289926-y1rjgbui	212	53	32	32	CD
cord-289926-y1rjgbui	212	54	]	]	-RRB-
cord-289926-y1rjgbui	212	55	might	may	MD
cord-289926-y1rjgbui	212	56	be	be	VB
cord-289926-y1rjgbui	212	57	sufficient	sufficient	JJ
cord-289926-y1rjgbui	212	58	to	to	TO
cord-289926-y1rjgbui	212	59	activate	activate	VB
cord-289926-y1rjgbui	212	60	a	a	DT
cord-289926-y1rjgbui	212	61	cellular	cellular	JJ
cord-289926-y1rjgbui	212	62	proto	proto	JJ
cord-289926-y1rjgbui	212	63	-	-	HYPH
cord-289926-y1rjgbui	212	64	oncogene	oncogene	NN
cord-289926-y1rjgbui	212	65	.	.	.
cord-289926-y1rjgbui	213	1	In	in	IN
cord-289926-y1rjgbui	213	2	fact	fact	NN
cord-289926-y1rjgbui	213	3	,	,	,
cord-289926-y1rjgbui	213	4	the	the	DT
cord-289926-y1rjgbui	213	5	expression	expression	NN
cord-289926-y1rjgbui	213	6	of	of	IN
cord-289926-y1rjgbui	213	7	the	the	DT
cord-289926-y1rjgbui	213	8	proto	proto	JJ
cord-289926-y1rjgbui	213	9	-	-	HYPH
cord-289926-y1rjgbui	213	10	oncogene	oncogene	NN
cord-289926-y1rjgbui	213	11	c	c	NN
cord-289926-y1rjgbui	213	12	-	-	HYPH
cord-289926-y1rjgbui	213	13	myc	myc	NNP
cord-289926-y1rjgbui	213	14	is	be	VBZ
cord-289926-y1rjgbui	213	15	a	a	DT
cord-289926-y1rjgbui	213	16	hallmark	hallmark	NN
cord-289926-y1rjgbui	213	17	of	of	IN
cord-289926-y1rjgbui	213	18	chronic	chronic	JJ
cord-289926-y1rjgbui	213	19	HDV	HDV	NNP
cord-289926-y1rjgbui	213	20	infection	infection	NN
cord-289926-y1rjgbui	213	21	;	;	:
cord-289926-y1rjgbui	213	22	c	c	LS
cord-289926-y1rjgbui	213	23	-	-	HYPH
cord-289926-y1rjgbui	213	24	myc	myc	NNP
cord-289926-y1rjgbui	213	25	protein	protein	NN
cord-289926-y1rjgbui	213	26	is	be	VBZ
cord-289926-y1rjgbui	213	27	observed	observe	VBN
cord-289926-y1rjgbui	213	28	only	only	RB
cord-289926-y1rjgbui	213	29	in	in	IN
cord-289926-y1rjgbui	213	30	cells	cell	NNS
cord-289926-y1rjgbui	213	31	that	that	WDT
cord-289926-y1rjgbui	213	32	contain	contain	VBP
cord-289926-y1rjgbui	213	33	HDAg	HDAg	NNS
cord-289926-y1rjgbui	213	34	[	[	-LRB-
cord-289926-y1rjgbui	213	35	46	46	CD
cord-289926-y1rjgbui	213	36	]	]	-RRB-
cord-289926-y1rjgbui	213	37	.	.	.
cord-289926-y1rjgbui	214	1	Binding	bind	VBG
cord-289926-y1rjgbui	214	2	of	of	IN
cord-289926-y1rjgbui	214	3	HDAg	HDAg	NNS
cord-289926-y1rjgbui	214	4	to	to	IN
cord-289926-y1rjgbui	214	5	cellular	cellular	JJ
cord-289926-y1rjgbui	214	6	DNA	dna	NN
cord-289926-y1rjgbui	214	7	has	have	VBZ
cord-289926-y1rjgbui	214	8	not	not	RB
cord-289926-y1rjgbui	214	9	been	be	VBN
cord-289926-y1rjgbui	214	10	explored	explore	VBN
cord-289926-y1rjgbui	214	11	.	.	.
cord-289926-y1rjgbui	215	1	It	-PRON-	PRP
cord-289926-y1rjgbui	215	2	would	would	MD
cord-289926-y1rjgbui	215	3	be	be	VB
cord-289926-y1rjgbui	215	4	interesting	interesting	JJ
cord-289926-y1rjgbui	215	5	to	to	TO
cord-289926-y1rjgbui	215	6	test	test	VB
cord-289926-y1rjgbui	215	7	for	for	IN
cord-289926-y1rjgbui	215	8	specific	specific	JJ
cord-289926-y1rjgbui	215	9	binding	binding	NN
cord-289926-y1rjgbui	215	10	of	of	IN
cord-289926-y1rjgbui	215	11	the	the	DT
cord-289926-y1rjgbui	215	12	RNA	RNA	NNP
cord-289926-y1rjgbui	215	13	-	-	HYPH
cord-289926-y1rjgbui	215	14	binding	bind	VBG
cord-289926-y1rjgbui	215	15	domain	domain	NN
cord-289926-y1rjgbui	215	16	of	of	IN
cord-289926-y1rjgbui	215	17	HDAg	hdag	NN
cord-289926-y1rjgbui	215	18	to	to	IN
cord-289926-y1rjgbui	215	19	c	c	NNP
cord-289926-y1rjgbui	215	20	-	-	HYPH
cord-289926-y1rjgbui	215	21	myc	myc	NNP
cord-289926-y1rjgbui	215	22	and	and	CC
cord-289926-y1rjgbui	215	23	other	other	JJ
cord-289926-y1rjgbui	215	24	proto	proto	JJ
cord-289926-y1rjgbui	215	25	-	-	HYPH
cord-289926-y1rjgbui	215	26	oncogenes	oncogene	NNS
cord-289926-y1rjgbui	215	27	that	that	WDT
cord-289926-y1rjgbui	215	28	could	could	MD
cord-289926-y1rjgbui	215	29	be	be	VB
cord-289926-y1rjgbui	215	30	involved	involve	VBN
cord-289926-y1rjgbui	215	31	in	in	IN
cord-289926-y1rjgbui	215	32	the	the	DT
cord-289926-y1rjgbui	215	33	onset	onset	NN
cord-289926-y1rjgbui	215	34	of	of	IN
cord-289926-y1rjgbui	215	35	cirrhosis	cirrhosis	NN
cord-289926-y1rjgbui	215	36	observed	observe	VBN
cord-289926-y1rjgbui	215	37	in	in	IN
cord-289926-y1rjgbui	215	38	HDV	HDV	NNP
cord-289926-y1rjgbui	215	39	patients	patient	NNS
cord-289926-y1rjgbui	215	40	.	.	.
cord-289926-y1rjgbui	216	1	Analysis	analysis	NN
cord-289926-y1rjgbui	216	2	of	of	IN
cord-289926-y1rjgbui	216	3	the	the	DT
cord-289926-y1rjgbui	216	4	HDV	HDV	NNP
cord-289926-y1rjgbui	216	5	genome	genome	NN
cord-289926-y1rjgbui	216	6	suggests	suggest	VBZ
cord-289926-y1rjgbui	216	7	that	that	IN
cord-289926-y1rjgbui	216	8	a	a	DT
cord-289926-y1rjgbui	216	9	large	large	JJ
cord-289926-y1rjgbui	216	10	part	part	NN
cord-289926-y1rjgbui	216	11	of	of	IN
cord-289926-y1rjgbui	216	12	the	the	DT
cord-289926-y1rjgbui	216	13	viral	viral	JJ
cord-289926-y1rjgbui	216	14	genome	genome	NN
cord-289926-y1rjgbui	216	15	,	,	,
cord-289926-y1rjgbui	216	16	including	include	VBG
cord-289926-y1rjgbui	216	17	the	the	DT
cord-289926-y1rjgbui	216	18	sequence	sequence	NN
cord-289926-y1rjgbui	216	19	coding	code	VBG
cord-289926-y1rjgbui	216	20	for	for	IN
cord-289926-y1rjgbui	216	21	HDAg	HDAg	NNS
cord-289926-y1rjgbui	216	22	,	,	,
cord-289926-y1rjgbui	216	23	is	be	VBZ
cord-289926-y1rjgbui	216	24	of	of	IN
cord-289926-y1rjgbui	216	25	cellular	cellular	JJ
cord-289926-y1rjgbui	216	26	origin	origin	NN
cord-289926-y1rjgbui	216	27	,	,	,
cord-289926-y1rjgbui	216	28	while	while	IN
cord-289926-y1rjgbui	216	29	the	the	DT
cord-289926-y1rjgbui	216	30	remaining	remain	VBG
cord-289926-y1rjgbui	216	31	part	part	NN
cord-289926-y1rjgbui	216	32	resembles	resemble	VBZ
cord-289926-y1rjgbui	216	33	a	a	DT
cord-289926-y1rjgbui	216	34	plant	plant	NN
cord-289926-y1rjgbui	216	35	viroid	viroid	NN
cord-289926-y1rjgbui	216	36	sequence	sequence	NN
cord-289926-y1rjgbui	216	37	[	[	-LRB-
cord-289926-y1rjgbui	216	38	17	17	CD
cord-289926-y1rjgbui	216	39	,	,	,
cord-289926-y1rjgbui	216	40	30	30	CD
cord-289926-y1rjgbui	216	41	]	]	-RRB-
cord-289926-y1rjgbui	216	42	.	.	.
cord-289926-y1rjgbui	217	1	The	the	DT
cord-289926-y1rjgbui	217	2	ribozyme	ribozyme	NNS
cord-289926-y1rjgbui	217	3	activities	activity	NNS
cord-289926-y1rjgbui	217	4	of	of	IN
cord-289926-y1rjgbui	217	5	HDV	HDV	NNP
cord-289926-y1rjgbui	217	6	,	,	,
cord-289926-y1rjgbui	217	7	such	such	JJ
cord-289926-y1rjgbui	217	8	as	as	IN
cord-289926-y1rjgbui	217	9	self	self	NN
cord-289926-y1rjgbui	217	10	-	-	HYPH
cord-289926-y1rjgbui	217	11	cleavage	cleavage	NN
cord-289926-y1rjgbui	217	12	and	and	CC
cord-289926-y1rjgbui	217	13	self	self	NN
cord-289926-y1rjgbui	217	14	-	-	HYPH
cord-289926-y1rjgbui	217	15	ligation	ligation	NN
cord-289926-y1rjgbui	217	16	,	,	,
cord-289926-y1rjgbui	217	17	further	further	RB
cord-289926-y1rjgbui	217	18	resemble	resemble	VB
cord-289926-y1rjgbui	217	19	the	the	DT
cord-289926-y1rjgbui	217	20	properties	property	NNS
cord-289926-y1rjgbui	217	21	of	of	IN
cord-289926-y1rjgbui	217	22	the	the	DT
cord-289926-y1rjgbui	217	23	viroid	viroid	NN
cord-289926-y1rjgbui	217	24	.	.	.
cord-289926-y1rjgbui	218	1	A	a	DT
cord-289926-y1rjgbui	218	2	possible	possible	JJ
cord-289926-y1rjgbui	218	3	mechanism	mechanism	NN
cord-289926-y1rjgbui	218	4	explaining	explain	VBG
cord-289926-y1rjgbui	218	5	the	the	DT
cord-289926-y1rjgbui	218	6	origin	origin	NN
cord-289926-y1rjgbui	218	7	of	of	IN
cord-289926-y1rjgbui	218	8	HDV	HDV	NNP
cord-289926-y1rjgbui	218	9	-the	-the	ADD
cord-289926-y1rjgbui	218	10	only	only	RB
cord-289926-y1rjgbui	218	11	known	know	VBN
cord-289926-y1rjgbui	218	12	animal	animal	NN
cord-289926-y1rjgbui	218	13	virus	virus	NN
cord-289926-y1rjgbui	218	14	with	with	IN
cord-289926-y1rjgbui	218	15	a	a	DT
cord-289926-y1rjgbui	218	16	circular	circular	JJ
cord-289926-y1rjgbui	218	17	RNA	RNA	NNP
cord-289926-y1rjgbui	218	18	genome	genome	NN
cord-289926-y1rjgbui	218	19	-involves	-involve	VBZ
cord-289926-y1rjgbui	218	20	the	the	DT
cord-289926-y1rjgbui	218	21	capture	capture	NN
cord-289926-y1rjgbui	218	22	of	of	IN
cord-289926-y1rjgbui	218	23	a	a	DT
cord-289926-y1rjgbui	218	24	cellular	cellular	JJ
cord-289926-y1rjgbui	218	25	transcript	transcript	NN
cord-289926-y1rjgbui	218	26	by	by	IN
cord-289926-y1rjgbui	218	27	a	a	DT
cord-289926-y1rjgbui	218	28	viroid	viroid	NN
cord-289926-y1rjgbui	218	29	.	.	.
cord-289926-y1rjgbui	219	1	The	the	DT
cord-289926-y1rjgbui	219	2	elegant	elegant	JJ
cord-289926-y1rjgbui	219	3	capture	capture	NN
cord-289926-y1rjgbui	219	4	mechanism	mechanism	NN
cord-289926-y1rjgbui	219	5	proposed	propose	VBN
cord-289926-y1rjgbui	219	6	by	by	IN
cord-289926-y1rjgbui	219	7	Brazas	Brazas	NNP
cord-289926-y1rjgbui	219	8	and	and	CC
cord-289926-y1rjgbui	219	9	Ganem	Ganem	NNP
cord-289926-y1rjgbui	219	10	[	[	-LRB-
cord-289926-y1rjgbui	219	11	5	5	CD
cord-289926-y1rjgbui	219	12	]	]	-RRB-
cord-289926-y1rjgbui	219	13	involves	involve	VBZ
cord-289926-y1rjgbui	219	14	the	the	DT
cord-289926-y1rjgbui	219	15	fusion	fusion	NN
cord-289926-y1rjgbui	219	16	of	of	IN
cord-289926-y1rjgbui	219	17	the	the	DT
cord-289926-y1rjgbui	219	18	cellular	cellular	JJ
cord-289926-y1rjgbui	219	19	and	and	CC
cord-289926-y1rjgbui	219	20	viral	viral	JJ
cord-289926-y1rjgbui	219	21	transcript	transcript	NN
cord-289926-y1rjgbui	219	22	,	,	,
cord-289926-y1rjgbui	219	23	and	and	CC
cord-289926-y1rjgbui	219	24	duplication	duplication	NN
cord-289926-y1rjgbui	219	25	of	of	IN
cord-289926-y1rjgbui	219	26	the	the	DT
cord-289926-y1rjgbui	219	27	cellular	cellular	JJ
cord-289926-y1rjgbui	219	28	transcript	transcript	NN
cord-289926-y1rjgbui	219	29	during	during	IN
cord-289926-y1rjgbui	219	30	the	the	DT
cord-289926-y1rjgbui	219	31	synthesis	synthesis	NN
cord-289926-y1rjgbui	219	32	of	of	IN
cord-289926-y1rjgbui	219	33	the	the	DT
cord-289926-y1rjgbui	219	34	antisense	antisense	NN
cord-289926-y1rjgbui	219	35	strand	strand	NN
cord-289926-y1rjgbui	219	36	,	,	,
cord-289926-y1rjgbui	219	37	followed	follow	VBN
cord-289926-y1rjgbui	219	38	by	by	IN
cord-289926-y1rjgbui	219	39	the	the	DT
cord-289926-y1rjgbui	219	40	recircularization	recircularization	NN
cord-289926-y1rjgbui	219	41	of	of	IN
cord-289926-y1rjgbui	219	42	the	the	DT
cord-289926-y1rjgbui	219	43	entire	entire	JJ
cord-289926-y1rjgbui	219	44	transcript	transcript	NN
cord-289926-y1rjgbui	219	45	(	(	-LRB-
cord-289926-y1rjgbui	219	46	Fig	Fig	NNP
cord-289926-y1rjgbui	219	47	.	.	NNP
cord-289926-y1rjgbui	219	48	5	5	CD
cord-289926-y1rjgbui	219	49	)	)	-RRB-
cord-289926-y1rjgbui	219	50	.	.	.
cord-289926-y1rjgbui	220	1	The	the	DT
cord-289926-y1rjgbui	220	2	size	size	NN
cord-289926-y1rjgbui	220	3	of	of	IN
cord-289926-y1rjgbui	220	4	the	the	DT
cord-289926-y1rjgbui	220	5	SRY	SRY	NNP
cord-289926-y1rjgbui	220	6	protein	protein	NN
cord-289926-y1rjgbui	220	7	matches	match	VBZ
cord-289926-y1rjgbui	220	8	the	the	DT
cord-289926-y1rjgbui	220	9	HDV	HDV	NNP
cord-289926-y1rjgbui	220	10	size	size	NN
cord-289926-y1rjgbui	220	11	requirements	requirement	NNS
cord-289926-y1rjgbui	220	12	:	:	:
cord-289926-y1rjgbui	220	13	SRY	SRY	NNP
cord-289926-y1rjgbui	220	14	is	be	VBZ
cord-289926-y1rjgbui	220	15	204	204	CD
cord-289926-y1rjgbui	220	16	residues	residue	NNS
cord-289926-y1rjgbui	220	17	long	long	RB
cord-289926-y1rjgbui	220	18	;	;	:
cord-289926-y1rjgbui	220	19	duplication	duplication	NN
cord-289926-y1rjgbui	220	20	of	of	IN
cord-289926-y1rjgbui	220	21	the	the	DT
cord-289926-y1rjgbui	220	22	SRY	SRY	NNP
cord-289926-y1rjgbui	220	23	RNA	RNA	NNP
cord-289926-y1rjgbui	220	24	would	would	MD
cord-289926-y1rjgbui	220	25	result	result	VB
cord-289926-y1rjgbui	220	26	in	in	IN
cord-289926-y1rjgbui	220	27	a	a	DT
cord-289926-y1rjgbui	220	28	cellular	cellular	JJ
cord-289926-y1rjgbui	220	29	part	part	NN
cord-289926-y1rjgbui	220	30	of	of	IN
cord-289926-y1rjgbui	220	31	HDV	HDV	NNP
cord-289926-y1rjgbui	220	32	over	over	IN
cord-289926-y1rjgbui	220	33	1200	1200	CD
cord-289926-y1rjgbui	220	34	bases	basis	NNS
cord-289926-y1rjgbui	220	35	long	long	JJ
cord-289926-y1rjgbui	221	1	(	(	-LRB-
cord-289926-y1rjgbui	221	2	the	the	DT
cord-289926-y1rjgbui	221	3	exact	exact	JJ
cord-289926-y1rjgbui	221	4	length	length	NN
cord-289926-y1rjgbui	221	5	will	will	MD
cord-289926-y1rjgbui	221	6	depend	depend	VB
cord-289926-y1rjgbui	221	7	on	on	IN
cord-289926-y1rjgbui	221	8	the	the	DT
cord-289926-y1rjgbui	221	9	length	length	NN
cord-289926-y1rjgbui	221	10	of	of	IN
cord-289926-y1rjgbui	221	11	the	the	DT
cord-289926-y1rjgbui	221	12	non	non	JJ
cord-289926-y1rjgbui	221	13	-	-	JJ
cord-289926-y1rjgbui	221	14	coding	coding	JJ
cord-289926-y1rjgbui	221	15	regions	region	NNS
cord-289926-y1rjgbui	221	16	of	of	IN
cord-289926-y1rjgbui	221	17	the	the	DT
cord-289926-y1rjgbui	221	18	SRY	SRY	NNP
cord-289926-y1rjgbui	221	19	transcript	transcript	NN
cord-289926-y1rjgbui	221	20	)	)	-RRB-
cord-289926-y1rjgbui	221	21	.	.	.
cord-289926-y1rjgbui	222	1	This	this	DT
cord-289926-y1rjgbui	222	2	agrees	agree	VBZ
cord-289926-y1rjgbui	222	3	with	with	IN
cord-289926-y1rjgbui	222	4	the	the	DT
cord-289926-y1rjgbui	222	5	approximately	approximately	RB
cord-289926-y1rjgbui	222	6	1300	1300	CD
cord-289926-y1rjgbui	222	7	bases	basis	NNS
cord-289926-y1rjgbui	222	8	of	of	IN
cord-289926-y1rjgbui	222	9	highly	highly	RB
cord-289926-y1rjgbui	222	10	self	self	NN
cord-289926-y1rjgbui	222	11	-	-	HYPH
cord-289926-y1rjgbui	222	12	complementary	complementary	JJ
cord-289926-y1rjgbui	222	13	RNA	RNA	NNP
cord-289926-y1rjgbui	222	14	of	of	IN
cord-289926-y1rjgbui	222	15	cellular	cellular	JJ
cord-289926-y1rjgbui	222	16	origin	origin	NN
cord-289926-y1rjgbui	222	17	in	in	IN
cord-289926-y1rjgbui	222	18	HDV	HDV	NNP
cord-289926-y1rjgbui	222	19	.	.	.
cord-289926-y1rjgbui	223	1	The	the	DT
cord-289926-y1rjgbui	223	2	replication	replication	NN
cord-289926-y1rjgbui	223	3	of	of	IN
cord-289926-y1rjgbui	223	4	HDV	HDV	NNP
cord-289926-y1rjgbui	223	5	is	be	VBZ
cord-289926-y1rjgbui	223	6	conducted	conduct	VBN
cord-289926-y1rjgbui	223	7	by	by	IN
cord-289926-y1rjgbui	223	8	cellular	cellular	JJ
cord-289926-y1rjgbui	223	9	machinery	machinery	NN
cord-289926-y1rjgbui	223	10	,	,	,
cord-289926-y1rjgbui	223	11	with	with	IN
cord-289926-y1rjgbui	223	12	the	the	DT
cord-289926-y1rjgbui	223	13	addition	addition	NN
cord-289926-y1rjgbui	223	14	of	of	IN
cord-289926-y1rjgbui	223	15	HDAg	HDAg	NNS
cord-289926-y1rjgbui	223	16	.	.	.
cord-289926-y1rjgbui	224	1	HDAg	HDAg	NNP
cord-289926-y1rjgbui	224	2	is	be	VBZ
cord-289926-y1rjgbui	224	3	absolutely	absolutely	RB
cord-289926-y1rjgbui	224	4	required	require	VBN
cord-289926-y1rjgbui	224	5	for	for	IN
cord-289926-y1rjgbui	224	6	in	in	IN
cord-289926-y1rjgbui	224	7	vivo	vivo	FW
cord-289926-y1rjgbui	224	8	HDV	HDV	NNP
cord-289926-y1rjgbui	224	9	replication	replication	NN
cord-289926-y1rjgbui	224	10	[	[	-LRB-
cord-289926-y1rjgbui	224	11	32	32	CD
cord-289926-y1rjgbui	224	12	]	]	-RRB-
cord-289926-y1rjgbui	224	13	and	and	CC
cord-289926-y1rjgbui	224	14	serves	serve	VBZ
cord-289926-y1rjgbui	224	15	as	as	IN
cord-289926-y1rjgbui	224	16	a	a	DT
cord-289926-y1rjgbui	224	17	bridging	bridge	VBG
cord-289926-y1rjgbui	224	18	factor	factor	NN
cord-289926-y1rjgbui	224	19	between	between	IN
cord-289926-y1rjgbui	224	20	the	the	DT
cord-289926-y1rjgbui	224	21	viral	viral	JJ
cord-289926-y1rjgbui	224	22	template	template	NN
cord-289926-y1rjgbui	224	23	and	and	CC
cord-289926-y1rjgbui	224	24	cellular	cellular	JJ
cord-289926-y1rjgbui	224	25	transcriptional	transcriptional	JJ
cord-289926-y1rjgbui	224	26	complex	complex	NN
cord-289926-y1rjgbui	224	27	.	.	.
cord-289926-y1rjgbui	225	1	Coopting	coopte	VBG
cord-289926-y1rjgbui	225	2	a	a	DT
cord-289926-y1rjgbui	225	3	single	single	JJ
cord-289926-y1rjgbui	225	4	component	component	NN
cord-289926-y1rjgbui	225	5	of	of	IN
cord-289926-y1rjgbui	225	6	the	the	DT
cord-289926-y1rjgbui	225	7	cellular	cellular	JJ
cord-289926-y1rjgbui	225	8	Fig	Fig	NNP
cord-289926-y1rjgbui	225	9	.	.	.
cord-289926-y1rjgbui	226	1	5	5	LS
cord-289926-y1rjgbui	226	2	.	.	.
cord-289926-y1rjgbui	227	1	Possible	possible	JJ
cord-289926-y1rjgbui	227	2	mechanism	mechanism	NN
cord-289926-y1rjgbui	227	3	of	of	IN
cord-289926-y1rjgbui	227	4	HDV	HDV	NNP
cord-289926-y1rjgbui	227	5	formation	formation	NN
cord-289926-y1rjgbui	227	6	.	.	.
cord-289926-y1rjgbui	228	1	A	a	DT
cord-289926-y1rjgbui	228	2	Viroid	viroid	JJ
cord-289926-y1rjgbui	228	3	sense	sense	NN
cord-289926-y1rjgbui	228	4	strand	strand	NN
cord-289926-y1rjgbui	228	5	joins	join	VBZ
cord-289926-y1rjgbui	228	6	at	at	IN
cord-289926-y1rjgbui	228	7	the	the	DT
cord-289926-y1rjgbui	228	8	3	3	CD
cord-289926-y1rjgbui	228	9	-end	-end	SYM
cord-289926-y1rjgbui	228	10	of	of	IN
cord-289926-y1rjgbui	228	11	SRY	SRY	NNP
cord-289926-y1rjgbui	228	12	transcript	transcript	NN
cord-289926-y1rjgbui	228	13	.	.	.
cord-289926-y1rjgbui	229	1	B	B	NNP
cord-289926-y1rjgbui	229	2	Replication	replication	NN
cord-289926-y1rjgbui	229	3	begins	begin	VBZ
cord-289926-y1rjgbui	229	4	at	at	IN
cord-289926-y1rjgbui	229	5	the	the	DT
cord-289926-y1rjgbui	229	6	3	3	CD
cord-289926-y1rjgbui	229	7	-end	-end	:
cord-289926-y1rjgbui	229	8	of	of	IN
cord-289926-y1rjgbui	229	9	the	the	DT
cord-289926-y1rjgbui	229	10	viroid	viroid	NN
cord-289926-y1rjgbui	229	11	and	and	CC
cord-289926-y1rjgbui	229	12	proceeds	proceed	VBZ
cord-289926-y1rjgbui	229	13	through	through	IN
cord-289926-y1rjgbui	229	14	SRY	SRY	NNP
cord-289926-y1rjgbui	229	15	,	,	,
cord-289926-y1rjgbui	229	16	synthesizing	synthesize	VBG
cord-289926-y1rjgbui	229	17	an	an	DT
cord-289926-y1rjgbui	229	18	antisense	antisense	NN
cord-289926-y1rjgbui	229	19	of	of	IN
cord-289926-y1rjgbui	229	20	the	the	DT
cord-289926-y1rjgbui	229	21	viroid	viroid	NNP
cord-289926-y1rjgbui	229	22	genome	genome	NN
cord-289926-y1rjgbui	229	23	and	and	CC
cord-289926-y1rjgbui	229	24	of	of	IN
cord-289926-y1rjgbui	229	25	the	the	DT
cord-289926-y1rjgbui	229	26	SRY	SRY	NNP
cord-289926-y1rjgbui	229	27	transcript	transcript	NN
cord-289926-y1rjgbui	229	28	.	.	.
cord-289926-y1rjgbui	230	1	A	a	DT
cord-289926-y1rjgbui	230	2	hairpin	hairpin	JJ
cord-289926-y1rjgbui	230	3	structure	structure	NN
cord-289926-y1rjgbui	230	4	at	at	IN
cord-289926-y1rjgbui	230	5	the	the	DT
cord-289926-y1rjgbui	230	6	5	5	CD
cord-289926-y1rjgbui	230	7	-end	-end	:
cord-289926-y1rjgbui	230	8	of	of	IN
cord-289926-y1rjgbui	230	9	SRY	SRY	NNP
cord-289926-y1rjgbui	230	10	template	template	NN
cord-289926-y1rjgbui	230	11	allows	allow	VBZ
cord-289926-y1rjgbui	230	12	transcription	transcription	NN
cord-289926-y1rjgbui	230	13	to	to	TO
cord-289926-y1rjgbui	230	14	continue	continue	VB
cord-289926-y1rjgbui	230	15	synthesizing	synthesize	VBG
cord-289926-y1rjgbui	230	16	a	a	DT
cord-289926-y1rjgbui	230	17	complement	complement	NN
cord-289926-y1rjgbui	230	18	of	of	IN
cord-289926-y1rjgbui	230	19	the	the	DT
cord-289926-y1rjgbui	230	20	SRY	SRY	NNP
cord-289926-y1rjgbui	230	21	-	-	:
cord-289926-y1rjgbui	230	22	that	that	DT
cord-289926-y1rjgbui	230	23	is	be	VBZ
cord-289926-y1rjgbui	230	24	a	a	DT
cord-289926-y1rjgbui	230	25	sense	sense	NN
cord-289926-y1rjgbui	230	26	version	version	NN
cord-289926-y1rjgbui	230	27	of	of	IN
cord-289926-y1rjgbui	230	28	SRY	SRY	NNP
cord-289926-y1rjgbui	230	29	transcript	transcript	NN
cord-289926-y1rjgbui	230	30	.	.	.
cord-289926-y1rjgbui	231	1	The	the	DT
cord-289926-y1rjgbui	231	2	resulting	result	VBG
cord-289926-y1rjgbui	231	3	construct	construct	NN
cord-289926-y1rjgbui	231	4	has	have	VBZ
cord-289926-y1rjgbui	231	5	an	an	DT
cord-289926-y1rjgbui	231	6	antisense	antisense	JJ
cord-289926-y1rjgbui	231	7	strand	strand	NN
cord-289926-y1rjgbui	231	8	of	of	IN
cord-289926-y1rjgbui	231	9	the	the	DT
cord-289926-y1rjgbui	231	10	viroid	viroid	NN
cord-289926-y1rjgbui	231	11	,	,	,
cord-289926-y1rjgbui	231	12	followed	follow	VBN
cord-289926-y1rjgbui	231	13	by	by	IN
cord-289926-y1rjgbui	231	14	the	the	DT
cord-289926-y1rjgbui	231	15	antisense	antisense	NN
cord-289926-y1rjgbui	231	16	copy	copy	NN
cord-289926-y1rjgbui	231	17	of	of	IN
cord-289926-y1rjgbui	231	18	SRY	SRY	NNP
cord-289926-y1rjgbui	231	19	followed	follow	VBN
cord-289926-y1rjgbui	231	20	by	by	IN
cord-289926-y1rjgbui	231	21	the	the	DT
cord-289926-y1rjgbui	231	22	sense	sense	NN
cord-289926-y1rjgbui	231	23	copy	copy	NN
cord-289926-y1rjgbui	231	24	of	of	IN
cord-289926-y1rjgbui	231	25	SRY	SRY	NNP
cord-289926-y1rjgbui	231	26	.	.	.
cord-289926-y1rjgbui	232	1	C	C	NNP
cord-289926-y1rjgbui	232	2	Circularization	Circularization	NNP
cord-289926-y1rjgbui	232	3	of	of	IN
cord-289926-y1rjgbui	232	4	the	the	DT
cord-289926-y1rjgbui	232	5	linear	linear	JJ
cord-289926-y1rjgbui	232	6	transcript	transcript	NN
cord-289926-y1rjgbui	232	7	.	.	.
cord-289926-y1rjgbui	233	1	D	D	NNP
cord-289926-y1rjgbui	233	2	Additional	additional	JJ
cord-289926-y1rjgbui	233	3	round	round	NN
cord-289926-y1rjgbui	233	4	of	of	IN
cord-289926-y1rjgbui	233	5	replication	replication	NN
cord-289926-y1rjgbui	233	6	results	result	NNS
cord-289926-y1rjgbui	233	7	in	in	IN
cord-289926-y1rjgbui	233	8	the	the	DT
cord-289926-y1rjgbui	233	9	reversal	reversal	NN
cord-289926-y1rjgbui	233	10	order	order	NN
cord-289926-y1rjgbui	233	11	of	of	IN
cord-289926-y1rjgbui	233	12	the	the	DT
cord-289926-y1rjgbui	233	13	regions	region	NNS
cord-289926-y1rjgbui	233	14	:	:	:
cord-289926-y1rjgbui	234	1	viroid	viroid	NNP
cord-289926-y1rjgbui	234	2	region	region	NN
cord-289926-y1rjgbui	234	3	(	(	-LRB-
cord-289926-y1rjgbui	234	4	sense	sense	NN
cord-289926-y1rjgbui	234	5	)	)	-RRB-
cord-289926-y1rjgbui	234	6	is	be	VBZ
cord-289926-y1rjgbui	234	7	followed	follow	VBN
cord-289926-y1rjgbui	234	8	by	by	IN
cord-289926-y1rjgbui	234	9	antisense	antisense	NN
cord-289926-y1rjgbui	234	10	strand	strand	NN
cord-289926-y1rjgbui	234	11	of	of	IN
cord-289926-y1rjgbui	234	12	SRY	SRY	NNP
cord-289926-y1rjgbui	234	13	,	,	,
cord-289926-y1rjgbui	234	14	which	which	WDT
cord-289926-y1rjgbui	234	15	in	in	IN
cord-289926-y1rjgbui	234	16	turn	turn	NN
cord-289926-y1rjgbui	234	17	is	be	VBZ
cord-289926-y1rjgbui	234	18	followed	follow	VBN
cord-289926-y1rjgbui	234	19	by	by	IN
cord-289926-y1rjgbui	234	20	the	the	DT
cord-289926-y1rjgbui	234	21	sense	sense	NN
cord-289926-y1rjgbui	234	22	strand	strand	NN
cord-289926-y1rjgbui	234	23	of	of	IN
cord-289926-y1rjgbui	234	24	SRY	SRY	NNP
cord-289926-y1rjgbui	234	25	.	.	.
cord-289926-y1rjgbui	235	1	E	e	LS
cord-289926-y1rjgbui	235	2	Subsequent	subsequent	JJ
cord-289926-y1rjgbui	235	3	evolution	evolution	NN
cord-289926-y1rjgbui	235	4	of	of	IN
cord-289926-y1rjgbui	235	5	the	the	DT
cord-289926-y1rjgbui	235	6	genome	genome	NN
cord-289926-y1rjgbui	235	7	results	result	NNS
cord-289926-y1rjgbui	235	8	in	in	IN
cord-289926-y1rjgbui	235	9	the	the	DT
cord-289926-y1rjgbui	235	10	organization	organization	NN
cord-289926-y1rjgbui	235	11	of	of	IN
cord-289926-y1rjgbui	235	12	domains	domain	NNS
cord-289926-y1rjgbui	235	13	seen	see	VBN
cord-289926-y1rjgbui	235	14	in	in	IN
cord-289926-y1rjgbui	235	15	the	the	DT
cord-289926-y1rjgbui	235	16	HDV	HDV	NNP
cord-289926-y1rjgbui	235	17	today	today	NN
cord-289926-y1rjgbui	236	1	:	:	:
cord-289926-y1rjgbui	236	2	a	a	DT
cord-289926-y1rjgbui	236	3	viroid	viroid	JJ
cord-289926-y1rjgbui	236	4	region	region	NN
cord-289926-y1rjgbui	236	5	is	be	VBZ
cord-289926-y1rjgbui	236	6	followed	follow	VBN
cord-289926-y1rjgbui	236	7	by	by	IN
cord-289926-y1rjgbui	236	8	an	an	DT
cord-289926-y1rjgbui	236	9	antisense	antisense	NN
cord-289926-y1rjgbui	236	10	of	of	IN
cord-289926-y1rjgbui	236	11	HDV	HDV	NNP
cord-289926-y1rjgbui	236	12	antigen	antigen	NN
cord-289926-y1rjgbui	236	13	followed	follow	VBN
cord-289926-y1rjgbui	236	14	by	by	IN
cord-289926-y1rjgbui	236	15	a	a	DT
cord-289926-y1rjgbui	236	16	non	non	JJ
cord-289926-y1rjgbui	236	17	-	-	JJ
cord-289926-y1rjgbui	236	18	coding	coding	JJ
cord-289926-y1rjgbui	236	19	region	region	NN
cord-289926-y1rjgbui	236	20	which	which	WDT
cord-289926-y1rjgbui	236	21	is	be	VBZ
cord-289926-y1rjgbui	236	22	highly	highly	RB
cord-289926-y1rjgbui	236	23	complementary	complementary	JJ
cord-289926-y1rjgbui	236	24	to	to	IN
cord-289926-y1rjgbui	236	25	the	the	DT
cord-289926-y1rjgbui	236	26	region	region	NN
cord-289926-y1rjgbui	236	27	coding	code	VBG
cord-289926-y1rjgbui	236	28	for	for	IN
cord-289926-y1rjgbui	236	29	the	the	DT
cord-289926-y1rjgbui	236	30	HDV	HDV	NNP
cord-289926-y1rjgbui	236	31	antigen	antigen	NN
cord-289926-y1rjgbui	236	32	transcriptional	transcriptional	JJ
cord-289926-y1rjgbui	236	33	machinery	machinery	NN
cord-289926-y1rjgbui	236	34	and	and	CC
cord-289926-y1rjgbui	236	35	adapting	adapt	VBG
cord-289926-y1rjgbui	236	36	its	-PRON-	PRP$
cord-289926-y1rjgbui	236	37	specificity	specificity	NN
cord-289926-y1rjgbui	236	38	to	to	TO
cord-289926-y1rjgbui	236	39	prefer	prefer	VB
cord-289926-y1rjgbui	236	40	the	the	DT
cord-289926-y1rjgbui	236	41	viral	viral	JJ
cord-289926-y1rjgbui	236	42	template	template	NN
cord-289926-y1rjgbui	236	43	is	be	VBZ
cord-289926-y1rjgbui	236	44	an	an	DT
cord-289926-y1rjgbui	236	45	elegant	elegant	JJ
cord-289926-y1rjgbui	236	46	way	way	NN
cord-289926-y1rjgbui	236	47	to	to	TO
cord-289926-y1rjgbui	236	48	ensure	ensure	VB
cord-289926-y1rjgbui	236	49	viral	viral	JJ
cord-289926-y1rjgbui	236	50	replication	replication	NN
cord-289926-y1rjgbui	236	51	and	and	CC
cord-289926-y1rjgbui	236	52	survival	survival	NN
cord-289926-y1rjgbui	236	53	.	.	.
cord-289926-y1rjgbui	237	1	It	-PRON-	PRP
cord-289926-y1rjgbui	237	2	is	be	VBZ
cord-289926-y1rjgbui	237	3	notable	notable	JJ
cord-289926-y1rjgbui	237	4	that	that	IN
cord-289926-y1rjgbui	237	5	the	the	DT
cord-289926-y1rjgbui	237	6	tissue	tissue	NN
cord-289926-y1rjgbui	237	7	-	-	HYPH
cord-289926-y1rjgbui	237	8	specificity	specificity	NN
cord-289926-y1rjgbui	237	9	of	of	IN
cord-289926-y1rjgbui	237	10	SRY	SRY	NNP
cord-289926-y1rjgbui	237	11	does	do	VBZ
cord-289926-y1rjgbui	237	12	not	not	RB
cord-289926-y1rjgbui	237	13	match	match	VB
cord-289926-y1rjgbui	237	14	that	that	DT
cord-289926-y1rjgbui	237	15	of	of	IN
cord-289926-y1rjgbui	237	16	HDV	HDV	NNP
cord-289926-y1rjgbui	237	17	:	:	:
cord-289926-y1rjgbui	238	1	SRY	SRY	NNP
cord-289926-y1rjgbui	238	2	is	be	VBZ
cord-289926-y1rjgbui	238	3	expressed	express	VBN
cord-289926-y1rjgbui	238	4	primarily	primarily	RB
cord-289926-y1rjgbui	238	5	in	in	IN
cord-289926-y1rjgbui	238	6	germ	germ	NN
cord-289926-y1rjgbui	238	7	cells	cell	NNS
cord-289926-y1rjgbui	238	8	and	and	CC
cord-289926-y1rjgbui	238	9	in	in	IN
cord-289926-y1rjgbui	238	10	somatic	somatic	JJ
cord-289926-y1rjgbui	238	11	cells	cell	NNS
cord-289926-y1rjgbui	238	12	of	of	IN
cord-289926-y1rjgbui	238	13	the	the	DT
cord-289926-y1rjgbui	238	14	testis	testis	NN
cord-289926-y1rjgbui	238	15	[	[	-LRB-
cord-289926-y1rjgbui	238	16	51	51	CD
cord-289926-y1rjgbui	238	17	]	]	-RRB-
cord-289926-y1rjgbui	238	18	,	,	,
cord-289926-y1rjgbui	238	19	while	while	IN
cord-289926-y1rjgbui	238	20	HDV	HDV	NNP
cord-289926-y1rjgbui	238	21	is	be	VBZ
cord-289926-y1rjgbui	238	22	restricted	restrict	VBN
cord-289926-y1rjgbui	238	23	to	to	IN
cord-289926-y1rjgbui	238	24	liver	liver	NN
cord-289926-y1rjgbui	238	25	tissue	tissue	NN
cord-289926-y1rjgbui	238	26	.	.	.
cord-289926-y1rjgbui	239	1	It	-PRON-	PRP
cord-289926-y1rjgbui	239	2	has	have	VBZ
cord-289926-y1rjgbui	239	3	been	be	VBN
cord-289926-y1rjgbui	239	4	shown	show	VBN
cord-289926-y1rjgbui	239	5	experimentally	experimentally	RB
cord-289926-y1rjgbui	239	6	,	,	,
cord-289926-y1rjgbui	239	7	however	however	RB
cord-289926-y1rjgbui	239	8	,	,	,
cord-289926-y1rjgbui	239	9	that	that	IN
cord-289926-y1rjgbui	239	10	the	the	DT
cord-289926-y1rjgbui	239	11	replication	replication	NN
cord-289926-y1rjgbui	239	12	of	of	IN
cord-289926-y1rjgbui	239	13	the	the	DT
cord-289926-y1rjgbui	239	14	HDV	HDV	NNP
cord-289926-y1rjgbui	239	15	can	can	MD
cord-289926-y1rjgbui	239	16	proceed	proceed	VB
cord-289926-y1rjgbui	239	17	in	in	IN
cord-289926-y1rjgbui	239	18	the	the	DT
cord-289926-y1rjgbui	239	19	skeletal	skeletal	JJ
cord-289926-y1rjgbui	239	20	muscle	muscle	NN
cord-289926-y1rjgbui	239	21	[	[	-LRB-
cord-289926-y1rjgbui	239	22	37	37	CD
cord-289926-y1rjgbui	239	23	]	]	-RRB-
cord-289926-y1rjgbui	239	24	.	.	.
cord-289926-y1rjgbui	240	1	A	a	DT
cord-289926-y1rjgbui	240	2	low	low	JJ
cord-289926-y1rjgbui	240	3	level	level	NN
cord-289926-y1rjgbui	240	4	of	of	IN
cord-289926-y1rjgbui	240	5	SRY	SRY	NNP
cord-289926-y1rjgbui	240	6	could	could	MD
cord-289926-y1rjgbui	240	7	be	be	VB
cord-289926-y1rjgbui	240	8	expressed	express	VBN
cord-289926-y1rjgbui	240	9	in	in	IN
cord-289926-y1rjgbui	240	10	other	other	JJ
cord-289926-y1rjgbui	240	11	tissues	tissue	NNS
cord-289926-y1rjgbui	240	12	,	,	,
cord-289926-y1rjgbui	240	13	including	include	VBG
cord-289926-y1rjgbui	240	14	the	the	DT
cord-289926-y1rjgbui	240	15	liver	liver	NN
cord-289926-y1rjgbui	240	16	,	,	,
cord-289926-y1rjgbui	240	17	allowing	allow	VBG
cord-289926-y1rjgbui	240	18	for	for	IN
cord-289926-y1rjgbui	240	19	transcript	transcript	NN
cord-289926-y1rjgbui	240	20	capture	capture	NN
cord-289926-y1rjgbui	240	21	,	,	,
cord-289926-y1rjgbui	240	22	or	or	CC
cord-289926-y1rjgbui	240	23	alternatively	alternatively	RB
cord-289926-y1rjgbui	240	24	,	,	,
cord-289926-y1rjgbui	240	25	HDV	HDV	NNP
cord-289926-y1rjgbui	240	26	could	could	MD
cord-289926-y1rjgbui	240	27	have	have	VB
cord-289926-y1rjgbui	240	28	evolved	evolve	VBN
cord-289926-y1rjgbui	240	29	from	from	IN
cord-289926-y1rjgbui	240	30	an	an	DT
cord-289926-y1rjgbui	240	31	SRY	sry	NN
cord-289926-y1rjgbui	240	32	-	-	HYPH
cord-289926-y1rjgbui	240	33	related	relate	VBN
cord-289926-y1rjgbui	240	34	gene	gene	NN
cord-289926-y1rjgbui	240	35	specifically	specifically	RB
cord-289926-y1rjgbui	240	36	expressed	express	VBN
cord-289926-y1rjgbui	240	37	in	in	IN
cord-289926-y1rjgbui	240	38	liver	liver	NN
cord-289926-y1rjgbui	240	39	,	,	,
cord-289926-y1rjgbui	240	40	such	such	JJ
cord-289926-y1rjgbui	240	41	as	as	IN
cord-289926-y1rjgbui	240	42	SOX-18	SOX-18	NNP
cord-289926-y1rjgbui	240	43	[	[	-LRB-
cord-289926-y1rjgbui	240	44	15	15	CD
cord-289926-y1rjgbui	240	45	]	]	-RRB-
cord-289926-y1rjgbui	240	46	.	.	.
cord-289926-y1rjgbui	241	1	Finally	finally	RB
cord-289926-y1rjgbui	241	2	,	,	,
cord-289926-y1rjgbui	241	3	it	-PRON-	PRP
cord-289926-y1rjgbui	241	4	is	be	VBZ
cord-289926-y1rjgbui	241	5	possible	possible	JJ
cord-289926-y1rjgbui	241	6	that	that	IN
cord-289926-y1rjgbui	241	7	the	the	DT
cord-289926-y1rjgbui	241	8	expression	expression	NN
cord-289926-y1rjgbui	241	9	of	of	IN
cord-289926-y1rjgbui	241	10	original	original	JJ
cord-289926-y1rjgbui	241	11	viroid	viroid	NN
cord-289926-y1rjgbui	241	12	was	be	VBD
cord-289926-y1rjgbui	241	13	not	not	RB
cord-289926-y1rjgbui	241	14	confined	confine	VBN
cord-289926-y1rjgbui	241	15	to	to	IN
cord-289926-y1rjgbui	241	16	liver	liver	NN
cord-289926-y1rjgbui	241	17	cells	cell	NNS
cord-289926-y1rjgbui	241	18	and	and	CC
cord-289926-y1rjgbui	241	19	the	the	DT
cord-289926-y1rjgbui	241	20	initial	initial	JJ
cord-289926-y1rjgbui	241	21	capture	capture	NN
cord-289926-y1rjgbui	241	22	event	event	NN
cord-289926-y1rjgbui	241	23	of	of	IN
cord-289926-y1rjgbui	241	24	cellular	cellular	JJ
cord-289926-y1rjgbui	241	25	RNA	RNA	NNP
cord-289926-y1rjgbui	241	26	could	could	MD
cord-289926-y1rjgbui	241	27	have	have	VB
cord-289926-y1rjgbui	241	28	occurred	occur	VBN
cord-289926-y1rjgbui	241	29	in	in	IN
cord-289926-y1rjgbui	241	30	a	a	DT
cord-289926-y1rjgbui	241	31	stem	stem	NN
cord-289926-y1rjgbui	241	32	or	or	CC
cord-289926-y1rjgbui	241	33	germ	germ	NN
cord-289926-y1rjgbui	241	34	cell	cell	NN
cord-289926-y1rjgbui	241	35	where	where	WRB
cord-289926-y1rjgbui	241	36	SRY	SRY	NNP
cord-289926-y1rjgbui	241	37	is	be	VBZ
cord-289926-y1rjgbui	241	38	abundantly	abundantly	RB
cord-289926-y1rjgbui	241	39	expressed	express	VBN
cord-289926-y1rjgbui	241	40	[	[	-LRB-
cord-289926-y1rjgbui	241	41	51	51	CD
cord-289926-y1rjgbui	241	42	]	]	-RRB-
cord-289926-y1rjgbui	241	43	.	.	.
cord-289926-y1rjgbui	242	1	This	this	DT
cord-289926-y1rjgbui	242	2	would	would	MD
cord-289926-y1rjgbui	242	3	introduce	introduce	VB
cord-289926-y1rjgbui	242	4	HDV	HDV	NNP
cord-289926-y1rjgbui	242	5	into	into	IN
cord-289926-y1rjgbui	242	6	many	many	JJ
cord-289926-y1rjgbui	242	7	cell	cell	NN
cord-289926-y1rjgbui	242	8	types	type	NNS
cord-289926-y1rjgbui	242	9	;	;	:
cord-289926-y1rjgbui	242	10	its	-PRON-	PRP$
cord-289926-y1rjgbui	242	11	eventual	eventual	JJ
cord-289926-y1rjgbui	242	12	dependence	dependence	NN
cord-289926-y1rjgbui	242	13	for	for	IN
cord-289926-y1rjgbui	242	14	replication	replication	NN
cord-289926-y1rjgbui	242	15	on	on	IN
cord-289926-y1rjgbui	242	16	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	242	17	B	B	NNP
cord-289926-y1rjgbui	242	18	virus	virus	NN
cord-289926-y1rjgbui	242	19	would	would	MD
cord-289926-y1rjgbui	242	20	limit	limit	VB
cord-289926-y1rjgbui	242	21	its	-PRON-	PRP$
cord-289926-y1rjgbui	242	22	range	range	NN
cord-289926-y1rjgbui	242	23	to	to	IN
cord-289926-y1rjgbui	242	24	the	the	DT
cord-289926-y1rjgbui	242	25	liver	liver	NN
cord-289926-y1rjgbui	242	26	cells	cell	NNS
cord-289926-y1rjgbui	242	27	.	.	.
cord-289926-y1rjgbui	243	1	It	-PRON-	PRP
cord-289926-y1rjgbui	243	2	may	may	MD
cord-289926-y1rjgbui	243	3	never	never	RB
cord-289926-y1rjgbui	243	4	be	be	VB
cord-289926-y1rjgbui	243	5	possible	possible	JJ
cord-289926-y1rjgbui	243	6	to	to	TO
cord-289926-y1rjgbui	243	7	conclusively	conclusively	RB
cord-289926-y1rjgbui	243	8	determine	determine	VB
cord-289926-y1rjgbui	243	9	the	the	DT
cord-289926-y1rjgbui	243	10	origin	origin	NN
cord-289926-y1rjgbui	243	11	of	of	IN
cord-289926-y1rjgbui	243	12	HDAg	HDAg	NNP
cord-289926-y1rjgbui	243	13	based	base	VBN
cord-289926-y1rjgbui	243	14	on	on	IN
cord-289926-y1rjgbui	243	15	sequence	sequence	NN
cord-289926-y1rjgbui	243	16	similarity	similarity	NN
cord-289926-y1rjgbui	243	17	alone	alone	RB
cord-289926-y1rjgbui	243	18	,	,	,
cord-289926-y1rjgbui	243	19	since	since	IN
cord-289926-y1rjgbui	243	20	RNA	rna	NN
cord-289926-y1rjgbui	243	21	-	-	HYPH
cord-289926-y1rjgbui	243	22	encoded	encode	VBN
cord-289926-y1rjgbui	243	23	genes	gene	NNS
cord-289926-y1rjgbui	243	24	evolve	evolve	VBP
cord-289926-y1rjgbui	243	25	rapidly	rapidly	RB
cord-289926-y1rjgbui	243	26	.	.	.
cord-289926-y1rjgbui	244	1	However	however	RB
cord-289926-y1rjgbui	244	2	several	several	JJ
cord-289926-y1rjgbui	244	3	arguments	argument	NNS
cord-289926-y1rjgbui	244	4	can	can	MD
cord-289926-y1rjgbui	244	5	be	be	VB
cord-289926-y1rjgbui	244	6	made	make	VBN
cord-289926-y1rjgbui	244	7	in	in	IN
cord-289926-y1rjgbui	244	8	support	support	NN
cord-289926-y1rjgbui	244	9	of	of	IN
cord-289926-y1rjgbui	244	10	SRY	SRY	NNP
cord-289926-y1rjgbui	244	11	as	as	IN
cord-289926-y1rjgbui	244	12	a	a	DT
cord-289926-y1rjgbui	244	13	cellular	cellular	JJ
cord-289926-y1rjgbui	244	14	counterpart	counterpart	NN
cord-289926-y1rjgbui	244	15	of	of	IN
cord-289926-y1rjgbui	244	16	HDAg	HDAg	NNS
cord-289926-y1rjgbui	244	17	.	.	.
cord-289926-y1rjgbui	245	1	1	1	LS
cord-289926-y1rjgbui	245	2	.	.	.
cord-289926-y1rjgbui	246	1	The	the	DT
cord-289926-y1rjgbui	246	2	sequence	sequence	NN
cord-289926-y1rjgbui	246	3	similarity	similarity	NN
cord-289926-y1rjgbui	246	4	between	between	IN
cord-289926-y1rjgbui	246	5	SRY	sry	NN
cord-289926-y1rjgbui	246	6	and	and	CC
cord-289926-y1rjgbui	246	7	HDAg	hdag	NN
cord-289926-y1rjgbui	246	8	corresponds	correspond	VBZ
cord-289926-y1rjgbui	246	9	to	to	IN
cord-289926-y1rjgbui	246	10	the	the	DT
cord-289926-y1rjgbui	246	11	functional	functional	JJ
cord-289926-y1rjgbui	246	12	domains	domain	NNS
cord-289926-y1rjgbui	246	13	experimentally	experimentally	RB
cord-289926-y1rjgbui	246	14	identified	identify	VBN
cord-289926-y1rjgbui	246	15	.	.	.
cord-289926-y1rjgbui	247	1	2	2	LS
cord-289926-y1rjgbui	247	2	.	.	.
cord-289926-y1rjgbui	248	1	Sequence	sequence	NN
cord-289926-y1rjgbui	248	2	similarity	similarity	NN
cord-289926-y1rjgbui	248	3	is	be	VBZ
cord-289926-y1rjgbui	248	4	restricted	restrict	VBN
cord-289926-y1rjgbui	248	5	to	to	IN
cord-289926-y1rjgbui	248	6	functional	functional	JJ
cord-289926-y1rjgbui	248	7	domains	domain	NNS
cord-289926-y1rjgbui	248	8	-as	-as	:
cord-289926-y1rjgbui	248	9	expected	expect	VBN
cord-289926-y1rjgbui	248	10	for	for	IN
cord-289926-y1rjgbui	248	11	rapidly	rapidly	RB
cord-289926-y1rjgbui	248	12	evolving	evolve	VBG
cord-289926-y1rjgbui	248	13	RNA	rna	NN
cord-289926-y1rjgbui	248	14	-	-	HYPH
cord-289926-y1rjgbui	248	15	encoded	encode	VBN
cord-289926-y1rjgbui	248	16	genes	gene	NNS
cord-289926-y1rjgbui	248	17	.	.	.
cord-289926-y1rjgbui	249	1	3	3	LS
cord-289926-y1rjgbui	249	2	.	.	.
cord-289926-y1rjgbui	250	1	Both	both	DT
cord-289926-y1rjgbui	250	2	proteins	protein	NNS
cord-289926-y1rjgbui	250	3	-SRY	-sry	VBP
cord-289926-y1rjgbui	250	4	and	and	CC
cord-289926-y1rjgbui	250	5	HDAg	hdag	NN
cord-289926-y1rjgbui	250	6	-bind	-bind	HYPH
cord-289926-y1rjgbui	250	7	nucleic	nucleic	JJ
cord-289926-y1rjgbui	250	8	acids	acid	NNS
cord-289926-y1rjgbui	250	9	and	and	CC
cord-289926-y1rjgbui	250	10	are	be	VBP
cord-289926-y1rjgbui	250	11	involved	involve	VBN
cord-289926-y1rjgbui	250	12	in	in	IN
cord-289926-y1rjgbui	250	13	transcription	transcription	NN
cord-289926-y1rjgbui	250	14	.	.	.
cord-289926-y1rjgbui	251	1	4	4	LS
cord-289926-y1rjgbui	251	2	.	.	.
cord-289926-y1rjgbui	252	1	Sequence	sequence	NN
cord-289926-y1rjgbui	252	2	and	and	CC
cord-289926-y1rjgbui	252	3	structure	structure	NN
cord-289926-y1rjgbui	252	4	similarity	similarity	NN
cord-289926-y1rjgbui	252	5	between	between	IN
cord-289926-y1rjgbui	252	6	DNA	dna	NN
cord-289926-y1rjgbui	252	7	-	-	HYPH
cord-289926-y1rjgbui	252	8	binding	binding	NN
cord-289926-y1rjgbui	252	9	to	to	IN
cord-289926-y1rjgbui	252	10	RNA	rna	NN
cord-289926-y1rjgbui	252	11	-	-	HYPH
cord-289926-y1rjgbui	252	12	binding	bind	VBG
cord-289926-y1rjgbui	252	13	motifs	motif	NNS
cord-289926-y1rjgbui	252	14	is	be	VBZ
cord-289926-y1rjgbui	252	15	supported	support	VBN
cord-289926-y1rjgbui	252	16	by	by	IN
cord-289926-y1rjgbui	252	17	a	a	DT
cord-289926-y1rjgbui	252	18	number	number	NN
cord-289926-y1rjgbui	252	19	of	of	IN
cord-289926-y1rjgbui	252	20	recent	recent	JJ
cord-289926-y1rjgbui	252	21	publications	publication	NNS
cord-289926-y1rjgbui	252	22	.	.	.
cord-289926-y1rjgbui	253	1	The	the	DT
cord-289926-y1rjgbui	253	2	above	above	JJ
cord-289926-y1rjgbui	253	3	arguments	argument	NNS
cord-289926-y1rjgbui	253	4	make	make	VBP
cord-289926-y1rjgbui	253	5	the	the	DT
cord-289926-y1rjgbui	253	6	SRY	SRY	NNP
cord-289926-y1rjgbui	253	7	protein	protein	NN
cord-289926-y1rjgbui	253	8	a	a	DT
cord-289926-y1rjgbui	253	9	strong	strong	JJ
cord-289926-y1rjgbui	253	10	candidate	candidate	NN
cord-289926-y1rjgbui	253	11	for	for	IN
cord-289926-y1rjgbui	253	12	a	a	DT
cord-289926-y1rjgbui	253	13	cellular	cellular	JJ
cord-289926-y1rjgbui	253	14	counterpart	counterpart	NN
cord-289926-y1rjgbui	253	15	of	of	IN
cord-289926-y1rjgbui	253	16	HDAg	HDAg	NNS
cord-289926-y1rjgbui	253	17	.	.	.
cord-289926-y1rjgbui	254	1	Our	-PRON-	PRP$
cord-289926-y1rjgbui	254	2	hypothesis	hypothesis	NN
cord-289926-y1rjgbui	254	3	predicts	predict	VBZ
cord-289926-y1rjgbui	254	4	presence	presence	NN
cord-289926-y1rjgbui	254	5	of	of	IN
cord-289926-y1rjgbui	254	6	additional	additional	JJ
cord-289926-y1rjgbui	254	7	nuclear	nuclear	JJ
cord-289926-y1rjgbui	254	8	localization	localization	NN
cord-289926-y1rjgbui	254	9	signals	signal	NNS
cord-289926-y1rjgbui	254	10	within	within	IN
cord-289926-y1rjgbui	254	11	ARMs	arm	NNS
cord-289926-y1rjgbui	254	12	which	which	WDT
cord-289926-y1rjgbui	254	13	was	be	VBD
cord-289926-y1rjgbui	254	14	recently	recently	RB
cord-289926-y1rjgbui	254	15	confirmed	confirm	VBN
cord-289926-y1rjgbui	254	16	experimentally	experimentally	RB
cord-289926-y1rjgbui	254	17	.	.	.
cord-289926-y1rjgbui	255	1	It	-PRON-	PRP
cord-289926-y1rjgbui	255	2	also	also	RB
cord-289926-y1rjgbui	255	3	predicts	predict	VBZ
cord-289926-y1rjgbui	255	4	structural	structural	JJ
cord-289926-y1rjgbui	255	5	perturbation	perturbation	NN
cord-289926-y1rjgbui	255	6	of	of	IN
cord-289926-y1rjgbui	255	7	the	the	DT
cord-289926-y1rjgbui	255	8	HDV	HDV	NNP
cord-289926-y1rjgbui	255	9	RNA	RNA	NNP
cord-289926-y1rjgbui	255	10	upon	upon	IN
cord-289926-y1rjgbui	255	11	HDAg	hdag	NN
cord-289926-y1rjgbui	255	12	binding	binding	NN
cord-289926-y1rjgbui	255	13	,	,	,
cord-289926-y1rjgbui	255	14	and	and	CC
cord-289926-y1rjgbui	255	15	possible	possible	JJ
cord-289926-y1rjgbui	255	16	specific	specific	JJ
cord-289926-y1rjgbui	255	17	binding	binding	NN
cord-289926-y1rjgbui	255	18	between	between	IN
cord-289926-y1rjgbui	255	19	HDAg	HDAg	NNS
cord-289926-y1rjgbui	255	20	and	and	CC
cord-289926-y1rjgbui	255	21	the	the	DT
cord-289926-y1rjgbui	255	22	regulatory	regulatory	JJ
cord-289926-y1rjgbui	255	23	regions	region	NNS
cord-289926-y1rjgbui	255	24	of	of	IN
cord-289926-y1rjgbui	255	25	cellular	cellular	JJ
cord-289926-y1rjgbui	255	26	proto	proto	JJ
cord-289926-y1rjgbui	255	27	-	-	HYPH
cord-289926-y1rjgbui	255	28	oncogenes	oncogene	NNS
cord-289926-y1rjgbui	255	29	.	.	.
cord-289926-y1rjgbui	256	1	Testing	test	VBG
cord-289926-y1rjgbui	256	2	these	these	DT
cord-289926-y1rjgbui	256	3	predictions	prediction	NNS
cord-289926-y1rjgbui	256	4	and	and	CC
cord-289926-y1rjgbui	256	5	determining	determine	VBG
cord-289926-y1rjgbui	256	6	the	the	DT
cord-289926-y1rjgbui	256	7	structure	structure	NN
cord-289926-y1rjgbui	256	8	of	of	IN
cord-289926-y1rjgbui	256	9	HDAg	HDAg	NNS
cord-289926-y1rjgbui	256	10	may	may	MD
cord-289926-y1rjgbui	256	11	shed	shed	VB
cord-289926-y1rjgbui	256	12	further	further	JJ
cord-289926-y1rjgbui	256	13	light	light	NN
cord-289926-y1rjgbui	256	14	on	on	IN
cord-289926-y1rjgbui	256	15	possible	possible	JJ
cord-289926-y1rjgbui	256	16	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	256	17	relationship	relationship	NN
cord-289926-y1rjgbui	256	18	between	between	IN
cord-289926-y1rjgbui	256	19	the	the	DT
cord-289926-y1rjgbui	256	20	HMG	HMG	NNP
cord-289926-y1rjgbui	256	21	domain	domain	NN
cord-289926-y1rjgbui	256	22	of	of	IN
cord-289926-y1rjgbui	256	23	SRY	SRY	NNP
cord-289926-y1rjgbui	256	24	and	and	CC
cord-289926-y1rjgbui	256	25	the	the	DT
cord-289926-y1rjgbui	256	26	RNA	RNA	NNP
cord-289926-y1rjgbui	256	27	binding	binding	NN
cord-289926-y1rjgbui	256	28	domain	domain	NN
cord-289926-y1rjgbui	256	29	of	of	IN
cord-289926-y1rjgbui	256	30	HDAg	HDAg	NNS
cord-289926-y1rjgbui	256	31	.	.	.
cord-289926-y1rjgbui	257	1	The	the	DT
cord-289926-y1rjgbui	257	2	intracisternal	intracisternal	JJ
cord-289926-y1rjgbui	257	3	A	a	NN
cord-289926-y1rjgbui	257	4	-	-	HYPH
cord-289926-y1rjgbui	257	5	particle	particle	NN
cord-289926-y1rjgbui	257	6	proximal	proximal	JJ
cord-289926-y1rjgbui	257	7	enhancer	enhancer	NN
cord-289926-y1rjgbui	257	8	-	-	HYPH
cord-289926-y1rjgbui	257	9	binding	bind	VBG
cord-289926-y1rjgbui	257	10	protein	protein	NN
cord-289926-y1rjgbui	257	11	activates	activate	VBZ
cord-289926-y1rjgbui	257	12	transcription	transcription	NN
cord-289926-y1rjgbui	257	13	and	and	CC
cord-289926-y1rjgbui	257	14	is	be	VBZ
cord-289926-y1rjgbui	257	15	identical	identical	JJ
cord-289926-y1rjgbui	257	16	to	to	IN
cord-289926-y1rjgbui	257	17	the	the	DT
cord-289926-y1rjgbui	257	18	RNA	RNA	NNP
cord-289926-y1rjgbui	257	19	-	-	:
cord-289926-y1rjgbui	257	20	and	and	CC
cord-289926-y1rjgbui	257	21	DNAbinding	DNAbinding	NNP
cord-289926-y1rjgbui	257	22	protein	protein	NN
cord-289926-y1rjgbui	258	1	p54nrb	p54nrb	NNP
cord-289926-y1rjgbui	259	1	/	/	NFP
cord-289926-y1rjgbui	260	1	NonO	NonO	NNP
cord-289926-y1rjgbui	261	1	The	the	DT
cord-289926-y1rjgbui	261	2	HMG-1	HMG-1	NNP
cord-289926-y1rjgbui	261	3	box	box	NN
cord-289926-y1rjgbui	261	4	protein	protein	NN
cord-289926-y1rjgbui	261	5	family	family	NN
cord-289926-y1rjgbui	261	6	:	:	:
cord-289926-y1rjgbui	261	7	classification	classification	NN
cord-289926-y1rjgbui	261	8	and	and	CC
cord-289926-y1rjgbui	261	9	functional	functional	JJ
cord-289926-y1rjgbui	261	10	relationship	relationship	NN
cord-289926-y1rjgbui	262	1	An	an	DT
cord-289926-y1rjgbui	262	2	ultra	ultra	JJ
cord-289926-y1rjgbui	262	3	-	-	JJ
cord-289926-y1rjgbui	262	4	sensitive	sensitive	JJ
cord-289926-y1rjgbui	262	5	RNA	RNA	NNP
cord-289926-y1rjgbui	262	6	structural	structural	JJ
cord-289926-y1rjgbui	262	7	element	element	NN
cord-289926-y1rjgbui	262	8	in	in	IN
cord-289926-y1rjgbui	262	9	viroid	viroid	JJ
cord-289926-y1rjgbui	262	10	-	-	HYPH
cord-289926-y1rjgbui	262	11	like	like	JJ
cord-289926-y1rjgbui	262	12	domain	domain	NN
cord-289926-y1rjgbui	262	13	of	of	IN
cord-289926-y1rjgbui	262	14	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	262	15	delta	delta	NNP
cord-289926-y1rjgbui	262	16	virus	virus	NN
cord-289926-y1rjgbui	262	17	Delta	Delta	NNP
cord-289926-y1rjgbui	262	18	-	-	:
cord-289926-y1rjgbui	262	19	interacting	interact	VBG
cord-289926-y1rjgbui	262	20	protein	protein	NN
cord-289926-y1rjgbui	262	21	A	a	NN
cord-289926-y1rjgbui	262	22	and	and	CC
cord-289926-y1rjgbui	262	23	the	the	DT
cord-289926-y1rjgbui	262	24	origin	origin	NN
cord-289926-y1rjgbui	262	25	of	of	IN
cord-289926-y1rjgbui	262	26	the	the	DT
cord-289926-y1rjgbui	262	27	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	262	28	delta	delta	NNP
cord-289926-y1rjgbui	262	29	virus	virus	NN
cord-289926-y1rjgbui	263	1	A	a	DT
cord-289926-y1rjgbui	263	2	cellular	cellular	JJ
cord-289926-y1rjgbui	263	3	homolog	homolog	NN
cord-289926-y1rjgbui	263	4	of	of	IN
cord-289926-y1rjgbui	263	5	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	263	6	delta	delta	NNP
cord-289926-y1rjgbui	263	7	antigen	antigen	NN
cord-289926-y1rjgbui	263	8	:	:	:
cord-289926-y1rjgbui	263	9	implications	implication	NNS
cord-289926-y1rjgbui	263	10	for	for	IN
cord-289926-y1rjgbui	263	11	viral	viral	JJ
cord-289926-y1rjgbui	263	12	replication	replication	NN
cord-289926-y1rjgbui	263	13	and	and	CC
cord-289926-y1rjgbui	263	14	evolution	evolution	NN
cord-289926-y1rjgbui	263	15	Sequence	sequence	NN
cord-289926-y1rjgbui	263	16	-	-	HYPH
cord-289926-y1rjgbui	263	17	specific	specific	JJ
cord-289926-y1rjgbui	263	18	RNA	RNA	NNP
cord-289926-y1rjgbui	263	19	binding	binding	NN
cord-289926-y1rjgbui	263	20	by	by	IN
cord-289926-y1rjgbui	263	21	bicoid	bicoid	NNP
cord-289926-y1rjgbui	263	22	Role	role	NN
cord-289926-y1rjgbui	263	23	of	of	IN
cord-289926-y1rjgbui	263	24	two	two	CD
cord-289926-y1rjgbui	263	25	forms	form	NNS
cord-289926-y1rjgbui	263	26	of	of	IN
cord-289926-y1rjgbui	263	27	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	263	28	delta	delta	NNP
cord-289926-y1rjgbui	263	29	virus	virus	NN
cord-289926-y1rjgbui	263	30	antigen	antigen	NN
cord-289926-y1rjgbui	263	31	:	:	:
cord-289926-y1rjgbui	263	32	evidence	evidence	NN
cord-289926-y1rjgbui	263	33	for	for	IN
cord-289926-y1rjgbui	263	34	a	a	DT
cord-289926-y1rjgbui	263	35	mechanism	mechanism	NN
cord-289926-y1rjgbui	263	36	of	of	IN
cord-289926-y1rjgbui	263	37	self	self	NN
cord-289926-y1rjgbui	263	38	-	-	HYPH
cord-289926-y1rjgbui	263	39	limiting	limit	VBG
cord-289926-y1rjgbui	263	40	genome	genome	NN
cord-289926-y1rjgbui	263	41	replication	replication	NN
cord-289926-y1rjgbui	263	42	Structure	Structure	NNP
cord-289926-y1rjgbui	263	43	and	and	CC
cord-289926-y1rjgbui	263	44	the	the	DT
cord-289926-y1rjgbui	263	45	replication	replication	NN
cord-289926-y1rjgbui	263	46	of	of	IN
cord-289926-y1rjgbui	263	47	the	the	DT
cord-289926-y1rjgbui	263	48	genome	genome	NN
cord-289926-y1rjgbui	263	49	of	of	IN
cord-289926-y1rjgbui	263	50	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	263	51	delta	delta	NNP
cord-289926-y1rjgbui	263	52	virus	virus	NN
cord-289926-y1rjgbui	263	53	Hepatitis	Hepatitis	NNP
cord-289926-y1rjgbui	263	54	delta	delta	NN
cord-289926-y1rjgbui	263	55	antigen	antigen	NN
cord-289926-y1rjgbui	263	56	mediates	mediate	VBZ
cord-289926-y1rjgbui	263	57	the	the	DT
cord-289926-y1rjgbui	263	58	nuclear	nuclear	JJ
cord-289926-y1rjgbui	263	59	import	import	NN
cord-289926-y1rjgbui	263	60	of	of	IN
cord-289926-y1rjgbui	263	61	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	263	62	delta	delta	NNP
cord-289926-y1rjgbui	263	63	virus	virus	NN
cord-289926-y1rjgbui	263	64	RNA	RNA	NNP
cord-289926-y1rjgbui	263	65	SRY	SRY	NNP
cord-289926-y1rjgbui	263	66	protein	protein	NN
cord-289926-y1rjgbui	263	67	enhances	enhance	VBZ
cord-289926-y1rjgbui	263	68	transcription	transcription	NN
cord-289926-y1rjgbui	263	69	of	of	IN
cord-289926-y1rjgbui	263	70	Fos	Fos	NNP
cord-289926-y1rjgbui	263	71	-	-	HYPH
cord-289926-y1rjgbui	263	72	related	relate	VBN
cord-289926-y1rjgbui	263	73	antigen	antigen	NN
cord-289926-y1rjgbui	263	74	1	1	CD
cord-289926-y1rjgbui	263	75	promoter	promoter	NN
cord-289926-y1rjgbui	263	76	constructs	construct	VBZ
cord-289926-y1rjgbui	263	77	The	the	DT
cord-289926-y1rjgbui	263	78	significance	significance	NN
cord-289926-y1rjgbui	263	79	of	of	IN
cord-289926-y1rjgbui	263	80	protein	protein	NN
cord-289926-y1rjgbui	263	81	sequence	sequence	NN
cord-289926-y1rjgbui	264	1	similarities	similarity	NNS
cord-289926-y1rjgbui	264	2	A	a	DT
cord-289926-y1rjgbui	264	3	model	model	NN
cord-289926-y1rjgbui	264	4	of	of	IN
cord-289926-y1rjgbui	264	5	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	264	6	changes	change	NNS
cord-289926-y1rjgbui	264	7	in	in	IN
cord-289926-y1rjgbui	264	8	protein	protein	NN
cord-289926-y1rjgbui	265	1	The	the	DT
cord-289926-y1rjgbui	265	2	embryonic	embryonic	JJ
cord-289926-y1rjgbui	265	3	enhancer	enhancer	NN
cord-289926-y1rjgbui	265	4	-	-	HYPH
cord-289926-y1rjgbui	265	5	binding	bind	VBG
cord-289926-y1rjgbui	265	6	protein	protein	NN
cord-289926-y1rjgbui	265	7	SSAP	SSAP	NNP
cord-289926-y1rjgbui	265	8	contains	contain	VBZ
cord-289926-y1rjgbui	265	9	a	a	DT
cord-289926-y1rjgbui	265	10	novel	novel	JJ
cord-289926-y1rjgbui	265	11	DNA	dna	NN
cord-289926-y1rjgbui	265	12	-	-	HYPH
cord-289926-y1rjgbui	265	13	binding	bind	VBG
cord-289926-y1rjgbui	265	14	domain	domain	NN
cord-289926-y1rjgbui	265	15	which	which	WDT
cord-289926-y1rjgbui	265	16	has	have	VBZ
cord-289926-y1rjgbui	265	17	homology	homology	NN
cord-289926-y1rjgbui	265	18	to	to	IN
cord-289926-y1rjgbui	265	19	several	several	JJ
cord-289926-y1rjgbui	265	20	RNA	rna	NN
cord-289926-y1rjgbui	265	21	-	-	HYPH
cord-289926-y1rjgbui	265	22	binding	bind	VBG
cord-289926-y1rjgbui	265	23	proteins	protein	NNS
cord-289926-y1rjgbui	265	24	RNA	RNA	NNP
cord-289926-y1rjgbui	265	25	recognition	recognition	NN
cord-289926-y1rjgbui	265	26	and	and	CC
cord-289926-y1rjgbui	265	27	translational	translational	JJ
cord-289926-y1rjgbui	265	28	regulation	regulation	NN
cord-289926-y1rjgbui	265	29	by	by	IN
cord-289926-y1rjgbui	265	30	a	a	DT
cord-289926-y1rjgbui	265	31	homeodomain	homeodomain	NN
cord-289926-y1rjgbui	265	32	protein	protein	NN
cord-289926-y1rjgbui	265	33	Sequence	sequence	NN
cord-289926-y1rjgbui	265	34	and	and	CC
cord-289926-y1rjgbui	265	35	expression	expression	NN
cord-289926-y1rjgbui	265	36	of	of	IN
cord-289926-y1rjgbui	265	37	Sox-18	Sox-18	NNP
cord-289926-y1rjgbui	265	38	,	,	,
cord-289926-y1rjgbui	265	39	a	a	DT
cord-289926-y1rjgbui	265	40	new	new	JJ
cord-289926-y1rjgbui	265	41	HMG	HMG	NNP
cord-289926-y1rjgbui	265	42	-	-	HYPH
cord-289926-y1rjgbui	265	43	box	box	NN
cord-289926-y1rjgbui	265	44	transcription	transcription	NN
cord-289926-y1rjgbui	265	45	factor	factor	NN
cord-289926-y1rjgbui	266	1	The	the	DT
cord-289926-y1rjgbui	266	2	intracellular	intracellular	JJ
cord-289926-y1rjgbui	266	3	distribution	distribution	NN
cord-289926-y1rjgbui	266	4	and	and	CC
cord-289926-y1rjgbui	266	5	function	function	NN
cord-289926-y1rjgbui	266	6	group	group	NN
cord-289926-y1rjgbui	266	7	of	of	IN
cord-289926-y1rjgbui	266	8	the	the	DT
cord-289926-y1rjgbui	266	9	high	high	JJ
cord-289926-y1rjgbui	266	10	mobility	mobility	NN
cord-289926-y1rjgbui	266	11	chromosomal	chromosomal	NN
cord-289926-y1rjgbui	266	12	proteins	protein	NNS
cord-289926-y1rjgbui	266	13	Phylogeny	phylogeny	NN
cord-289926-y1rjgbui	266	14	of	of	IN
cord-289926-y1rjgbui	266	15	viroids	viroid	NNS
cord-289926-y1rjgbui	266	16	,	,	,
cord-289926-y1rjgbui	266	17	viroidlike	viroidlike	NNP
cord-289926-y1rjgbui	266	18	satellite	satellite	NN
cord-289926-y1rjgbui	266	19	RNAs	rna	NNS
cord-289926-y1rjgbui	266	20	,	,	,
cord-289926-y1rjgbui	266	21	and	and	CC
cord-289926-y1rjgbui	266	22	the	the	DT
cord-289926-y1rjgbui	266	23	viroidlike	viroidlike	JJ
cord-289926-y1rjgbui	266	24	domain	domain	NN
cord-289926-y1rjgbui	266	25	of	of	IN
cord-289926-y1rjgbui	266	26	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	266	27	delta	delta	NNP
cord-289926-y1rjgbui	266	28	virus	virus	NN
cord-289926-y1rjgbui	266	29	RNA	RNA	NNP
cord-289926-y1rjgbui	266	30	Influence	Influence	NNP
cord-289926-y1rjgbui	266	31	of	of	IN
cord-289926-y1rjgbui	266	32	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	266	33	delta	delta	NNP
cord-289926-y1rjgbui	266	34	virus	virus	NN
cord-289926-y1rjgbui	266	35	infection	infection	NN
cord-289926-y1rjgbui	266	36	on	on	IN
cord-289926-y1rjgbui	266	37	progression	progression	NN
cord-289926-y1rjgbui	266	38	to	to	IN
cord-289926-y1rjgbui	266	39	cirrhosis	cirrhosis	NN
cord-289926-y1rjgbui	266	40	in	in	IN
cord-289926-y1rjgbui	266	41	chronic	chronic	JJ
cord-289926-y1rjgbui	266	42	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	266	43	type	type	NN
cord-289926-y1rjgbui	266	44	B	B	NNP
cord-289926-y1rjgbui	266	45	Maximum	Maximum	NNP
cord-289926-y1rjgbui	266	46	-	-	HYPH
cord-289926-y1rjgbui	266	47	likelihood	likelihood	NN
cord-289926-y1rjgbui	266	48	estimation	estimation	NN
cord-289926-y1rjgbui	266	49	of	of	IN
cord-289926-y1rjgbui	266	50	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	266	51	trees	tree	NNS
cord-289926-y1rjgbui	266	52	from	from	IN
cord-289926-y1rjgbui	266	53	continuous	continuous	JJ
cord-289926-y1rjgbui	266	54	characters	character	NNS
cord-289926-y1rjgbui	266	55	Progressive	progressive	JJ
cord-289926-y1rjgbui	266	56	sequence	sequence	NN
cord-289926-y1rjgbui	266	57	alignment	alignment	NN
cord-289926-y1rjgbui	266	58	as	as	IN
cord-289926-y1rjgbui	266	59	a	a	DT
cord-289926-y1rjgbui	266	60	prerequisite	prerequisite	NN
cord-289926-y1rjgbui	266	61	to	to	TO
cord-289926-y1rjgbui	266	62	correct	correct	VB
cord-289926-y1rjgbui	266	63	phylogenetic	phylogenetic	JJ
cord-289926-y1rjgbui	266	64	trees	tree	NNS
cord-289926-y1rjgbui	267	1	An	an	DT
cord-289926-y1rjgbui	267	2	SRY	sry	NN
cord-289926-y1rjgbui	267	3	-	-	HYPH
cord-289926-y1rjgbui	267	4	related	relate	VBN
cord-289926-y1rjgbui	267	5	sequence	sequence	NN
cord-289926-y1rjgbui	267	6	of	of	IN
cord-289926-y1rjgbui	267	7	the	the	DT
cord-289926-y1rjgbui	267	8	marsupial	marsupial	JJ
cord-289926-y1rjgbui	267	9	X	X	NNP
cord-289926-y1rjgbui	267	10	chromosome	chromosome	NN
cord-289926-y1rjgbui	267	11	:	:	:
cord-289926-y1rjgbui	267	12	implications	implication	NNS
cord-289926-y1rjgbui	267	13	for	for	IN
cord-289926-y1rjgbui	267	14	the	the	DT
cord-289926-y1rjgbui	267	15	evolution	evolution	NN
cord-289926-y1rjgbui	267	16	of	of	IN
cord-289926-y1rjgbui	267	17	the	the	DT
cord-289926-y1rjgbui	267	18	mammalian	mammalian	JJ
cord-289926-y1rjgbui	267	19	testis	testis	NN
cord-289926-y1rjgbui	267	20	-	-	HYPH
cord-289926-y1rjgbui	267	21	determining	determine	VBG
cord-289926-y1rjgbui	267	22	gene	gene	NN
cord-289926-y1rjgbui	268	1	The	the	DT
cord-289926-y1rjgbui	268	2	RNAs	rna	NNS
cord-289926-y1rjgbui	268	3	of	of	IN
cord-289926-y1rjgbui	268	4	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	268	5	delta	delta	NNP
cord-289926-y1rjgbui	268	6	virus	virus	NN
cord-289926-y1rjgbui	268	7	are	be	VBP
cord-289926-y1rjgbui	268	8	copied	copy	VBN
cord-289926-y1rjgbui	268	9	by	by	IN
cord-289926-y1rjgbui	268	10	RNA	RNA	NNP
cord-289926-y1rjgbui	268	11	polymerase	polymerase	NN
cord-289926-y1rjgbui	268	12	II	II	NNP
cord-289926-y1rjgbui	268	13	in	in	IN
cord-289926-y1rjgbui	268	14	nuclear	nuclear	JJ
cord-289926-y1rjgbui	268	15	homogenates	homogenate	NNS
cord-289926-y1rjgbui	268	16	Identity	identity	NN
cord-289926-y1rjgbui	268	17	of	of	IN
cord-289926-y1rjgbui	268	18	the	the	DT
cord-289926-y1rjgbui	268	19	RNA	RNA	NNP
cord-289926-y1rjgbui	268	20	-	-	HYPH
cord-289926-y1rjgbui	268	21	binding	bind	VBG
cord-289926-y1rjgbui	268	22	protein	protein	NN
cord-289926-y1rjgbui	268	23	K	k	NN
cord-289926-y1rjgbui	268	24	of	of	IN
cord-289926-y1rjgbui	268	25	hnRNP	hnrnp	DT
cord-289926-y1rjgbui	268	26	particles	particle	NNS
cord-289926-y1rjgbui	268	27	with	with	IN
cord-289926-y1rjgbui	268	28	protein	protein	NN
cord-289926-y1rjgbui	268	29	H16	H16	NNP
cord-289926-y1rjgbui	268	30	,	,	,
cord-289926-y1rjgbui	268	31	a	a	DT
cord-289926-y1rjgbui	268	32	sequence	sequence	NN
cord-289926-y1rjgbui	268	33	-	-	HYPH
cord-289926-y1rjgbui	268	34	specific	specific	JJ
cord-289926-y1rjgbui	268	35	single	single	JJ
cord-289926-y1rjgbui	268	36	strand	strand	NN
cord-289926-y1rjgbui	268	37	DNA	dna	NN
cord-289926-y1rjgbui	268	38	-	-	HYPH
cord-289926-y1rjgbui	268	39	binding	bind	VBG
cord-289926-y1rjgbui	268	40	protein	protein	NN
cord-289926-y1rjgbui	269	1	The	the	DT
cord-289926-y1rjgbui	269	2	HMG	HMG	NNP
cord-289926-y1rjgbui	269	3	domain	domain	NN
cord-289926-y1rjgbui	269	4	of	of	IN
cord-289926-y1rjgbui	269	5	lymphoid	lymphoid	JJ
cord-289926-y1rjgbui	269	6	enhancer	enhancer	NN
cord-289926-y1rjgbui	269	7	factor	factor	NN
cord-289926-y1rjgbui	269	8	1	1	CD
cord-289926-y1rjgbui	269	9	bends	bend	VBZ
cord-289926-y1rjgbui	269	10	DNA	dna	NN
cord-289926-y1rjgbui	269	11	and	and	CC
cord-289926-y1rjgbui	269	12	facilitates	facilitate	VBZ
cord-289926-y1rjgbui	269	13	assembly	assembly	NN
cord-289926-y1rjgbui	269	14	of	of	IN
cord-289926-y1rjgbui	269	15	functional	functional	JJ
cord-289926-y1rjgbui	269	16	nucleoprotein	nucleoprotein	JJ
cord-289926-y1rjgbui	269	17	structures	structure	NNS
cord-289926-y1rjgbui	269	18	Trans	Trans	NNP
cord-289926-y1rjgbui	269	19	-	-	JJ
cord-289926-y1rjgbui	269	20	dominant	dominant	JJ
cord-289926-y1rjgbui	269	21	inhibition	inhibition	NN
cord-289926-y1rjgbui	269	22	of	of	IN
cord-289926-y1rjgbui	269	23	human	human	JJ
cord-289926-y1rjgbui	269	24	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	269	25	delta	delta	NNP
cord-289926-y1rjgbui	269	26	virus	virus	NN
cord-289926-y1rjgbui	269	27	genome	genome	NN
cord-289926-y1rjgbui	269	28	replication	replication	NN
cord-289926-y1rjgbui	269	29	Profile	Profile	NNP
cord-289926-y1rjgbui	269	30	analysis	analysis	NN
cord-289926-y1rjgbui	269	31	:	:	:
cord-289926-y1rjgbui	269	32	detection	detection	NN
cord-289926-y1rjgbui	269	33	of	of	IN
cord-289926-y1rjgbui	269	34	distantly	distantly	RB
cord-289926-y1rjgbui	269	35	related	relate	VBN
cord-289926-y1rjgbui	269	36	proteins	protein	NNS
cord-289926-y1rjgbui	269	37	Identification	identification	NN
cord-289926-y1rjgbui	269	38	of	of	IN
cord-289926-y1rjgbui	269	39	sequence	sequence	NN
cord-289926-y1rjgbui	269	40	pattern	pattern	NN
cord-289926-y1rjgbui	269	41	with	with	IN
cord-289926-y1rjgbui	269	42	profile	profile	NN
cord-289926-y1rjgbui	269	43	analysis	analysis	NN
cord-289926-y1rjgbui	269	44	Ribosomal	Ribosomal	NNP
cord-289926-y1rjgbui	269	45	protein	protein	NN
cord-289926-y1rjgbui	269	46	S7	S7	NNP
cord-289926-y1rjgbui	269	47	:	:	:
cord-289926-y1rjgbui	269	48	a	a	DT
cord-289926-y1rjgbui	269	49	new	new	JJ
cord-289926-y1rjgbui	269	50	RNA	rna	NN
cord-289926-y1rjgbui	269	51	-	-	HYPH
cord-289926-y1rjgbui	269	52	binding	bind	VBG
cord-289926-y1rjgbui	269	53	motif	motif	NN
cord-289926-y1rjgbui	269	54	with	with	IN
cord-289926-y1rjgbui	269	55	structural	structural	JJ
cord-289926-y1rjgbui	269	56	similarities	similarity	NNS
cord-289926-y1rjgbui	269	57	to	to	IN
cord-289926-y1rjgbui	269	58	a	a	DT
cord-289926-y1rjgbui	269	59	DNA	dna	NN
cord-289926-y1rjgbui	269	60	architectural	architectural	JJ
cord-289926-y1rjgbui	269	61	factor	factor	NN
cord-289926-y1rjgbui	269	62	Methods	method	NNS
cord-289926-y1rjgbui	269	63	for	for	IN
cord-289926-y1rjgbui	269	64	assessing	assess	VBG
cord-289926-y1rjgbui	269	65	the	the	DT
cord-289926-y1rjgbui	269	66	statistical	statistical	JJ
cord-289926-y1rjgbui	269	67	significance	significance	NN
cord-289926-y1rjgbui	269	68	of	of	IN
cord-289926-y1rjgbui	269	69	molecular	molecular	JJ
cord-289926-y1rjgbui	269	70	sequence	sequence	NN
cord-289926-y1rjgbui	269	71	features	feature	NNS
cord-289926-y1rjgbui	269	72	by	by	IN
cord-289926-y1rjgbui	269	73	using	use	VBG
cord-289926-y1rjgbui	269	74	general	general	JJ
cord-289926-y1rjgbui	269	75	scoring	scoring	NN
cord-289926-y1rjgbui	269	76	scheme	scheme	NN
cord-289926-y1rjgbui	270	1	The	the	DT
cord-289926-y1rjgbui	270	2	molecular	molecular	JJ
cord-289926-y1rjgbui	270	3	biology	biology	NN
cord-289926-y1rjgbui	270	4	of˙hepatitis	of˙hepatitis	IN
cord-289926-y1rjgbui	270	5	delta	delta	NN
cord-289926-y1rjgbui	270	6	virus	virus	NN
cord-289926-y1rjgbui	270	7	Ancestry	ancestry	NN
cord-289926-y1rjgbui	270	8	and	and	CC
cord-289926-y1rjgbui	270	9	diversity	diversity	NN
cord-289926-y1rjgbui	270	10	of	of	IN
cord-289926-y1rjgbui	270	11	the	the	DT
cord-289926-y1rjgbui	270	12	HMG	HMG	NNP
cord-289926-y1rjgbui	270	13	box	box	NN
cord-289926-y1rjgbui	270	14	superfamily	superfamily	NN
cord-289926-y1rjgbui	270	15	RNA	RNA	NNP
cord-289926-y1rjgbui	270	16	-	-	HYPH
cord-289926-y1rjgbui	270	17	binding	bind	VBG
cord-289926-y1rjgbui	270	18	activity	activity	NN
cord-289926-y1rjgbui	270	19	of	of	IN
cord-289926-y1rjgbui	270	20	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	270	21	delta	delta	NNP
cord-289926-y1rjgbui	270	22	antigen	antigen	NNP
cord-289926-y1rjgbui	270	23	involves	involve	VBZ
cord-289926-y1rjgbui	270	24	two	two	CD
cord-289926-y1rjgbui	270	25	arginine	arginine	NN
cord-289926-y1rjgbui	270	26	-	-	HYPH
cord-289926-y1rjgbui	270	27	rich	rich	JJ
cord-289926-y1rjgbui	270	28	motifs	motif	NNS
cord-289926-y1rjgbui	270	29	and	and	CC
cord-289926-y1rjgbui	270	30	is	be	VBZ
cord-289926-y1rjgbui	270	31	required	require	VBN
cord-289926-y1rjgbui	270	32	for	for	IN
cord-289926-y1rjgbui	270	33	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	270	34	delta	delta	NNP
cord-289926-y1rjgbui	270	35	virus	virus	NN
cord-289926-y1rjgbui	270	36	RNA	RNA	NNP
cord-289926-y1rjgbui	270	37	replication	replication	NN
cord-289926-y1rjgbui	270	38	Characterization	characterization	NN
cord-289926-y1rjgbui	270	39	of	of	IN
cord-289926-y1rjgbui	270	40	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	270	41	delta	delta	NNP
cord-289926-y1rjgbui	270	42	antigen	antigen	NN
cord-289926-y1rjgbui	270	43	:	:	:
cord-289926-y1rjgbui	270	44	specific	specific	JJ
cord-289926-y1rjgbui	270	45	binding	binding	NN
cord-289926-y1rjgbui	270	46	to	to	IN
cord-289926-y1rjgbui	270	47	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	270	48	delta	delta	NNP
cord-289926-y1rjgbui	270	49	virus	virus	NN
cord-289926-y1rjgbui	270	50	RNA	RNA	NNP
cord-289926-y1rjgbui	270	51	Delta	Delta	NNP
cord-289926-y1rjgbui	270	52	-interacting	-interacte	VBG
cord-289926-y1rjgbui	270	53	protein	protein	NN
cord-289926-y1rjgbui	270	54	A	A	NNP
cord-289926-y1rjgbui	270	55	and	and	CC
cord-289926-y1rjgbui	270	56	the	the	DT
cord-289926-y1rjgbui	270	57	origin	origin	NN
cord-289926-y1rjgbui	270	58	of	of	IN
cord-289926-y1rjgbui	270	59	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	270	60	delta	delta	NNP
cord-289926-y1rjgbui	270	61	virus	virus	NN
cord-289926-y1rjgbui	271	1	A	a	DT
cord-289926-y1rjgbui	271	2	general	general	JJ
cord-289926-y1rjgbui	271	3	method	method	NN
cord-289926-y1rjgbui	271	4	applicable	applicable	JJ
cord-289926-y1rjgbui	271	5	to	to	IN
cord-289926-y1rjgbui	271	6	the	the	DT
cord-289926-y1rjgbui	271	7	search	search	NN
cord-289926-y1rjgbui	271	8	for	for	IN
cord-289926-y1rjgbui	271	9	similarities	similarity	NNS
cord-289926-y1rjgbui	271	10	in	in	IN
cord-289926-y1rjgbui	271	11	the	the	DT
cord-289926-y1rjgbui	271	12	amino	amino	NN
cord-289926-y1rjgbui	271	13	acid	acid	NN
cord-289926-y1rjgbui	271	14	sequence	sequence	NN
cord-289926-y1rjgbui	271	15	of	of	IN
cord-289926-y1rjgbui	271	16	two	two	CD
cord-289926-y1rjgbui	271	17	proteins	protein	NNS
cord-289926-y1rjgbui	271	18	Homology	homology	NN
cord-289926-y1rjgbui	271	19	in	in	IN
cord-289926-y1rjgbui	271	20	classical	classical	JJ
cord-289926-y1rjgbui	271	21	and	and	CC
cord-289926-y1rjgbui	271	22	molecular	molecular	JJ
cord-289926-y1rjgbui	271	23	biology	biology	NN
cord-289926-y1rjgbui	271	24	Replication	replication	NN
cord-289926-y1rjgbui	271	25	of	of	IN
cord-289926-y1rjgbui	271	26	the	the	DT
cord-289926-y1rjgbui	271	27	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	271	28	delta	delta	NNP
cord-289926-y1rjgbui	271	29	virus	virus	NN
cord-289926-y1rjgbui	271	30	RNA	RNA	NNP
cord-289926-y1rjgbui	271	31	in	in	IN
cord-289926-y1rjgbui	271	32	mice	mouse	NNS
cord-289926-y1rjgbui	271	33	after	after	IN
cord-289926-y1rjgbui	271	34	intramuscular	intramuscular	JJ
cord-289926-y1rjgbui	271	35	injection	injection	NN
cord-289926-y1rjgbui	271	36	of	of	IN
cord-289926-y1rjgbui	271	37	plasmid	plasmid	NN
cord-289926-y1rjgbui	271	38	DNA	DNA	NNP
cord-289926-y1rjgbui	271	39	Solution	Solution	NNP
cord-289926-y1rjgbui	271	40	structure	structure	NN
cord-289926-y1rjgbui	271	41	of	of	IN
cord-289926-y1rjgbui	271	42	a	a	DT
cord-289926-y1rjgbui	271	43	DNA	dna	NN
cord-289926-y1rjgbui	271	44	-	-	HYPH
cord-289926-y1rjgbui	271	45	binding	bind	VBG
cord-289926-y1rjgbui	271	46	domain	domain	NN
cord-289926-y1rjgbui	271	47	from	from	IN
cord-289926-y1rjgbui	271	48	HMG1	HMG1	NNP
cord-289926-y1rjgbui	271	49	Replication	Replication	NNP
cord-289926-y1rjgbui	271	50	and	and	CC
cord-289926-y1rjgbui	271	51	evolution	evolution	NN
cord-289926-y1rjgbui	271	52	of	of	IN
cord-289926-y1rjgbui	271	53	viroid	viroid	JJ
cord-289926-y1rjgbui	271	54	-	-	HYPH
cord-289926-y1rjgbui	271	55	like	like	JJ
cord-289926-y1rjgbui	271	56	pathogens	pathogen	NNS
cord-289926-y1rjgbui	272	1	A	a	DT
cord-289926-y1rjgbui	272	2	gene	gene	NN
cord-289926-y1rjgbui	272	3	from	from	IN
cord-289926-y1rjgbui	272	4	the	the	DT
cord-289926-y1rjgbui	272	5	human	human	JJ
cord-289926-y1rjgbui	272	6	sexdetermining	sexdetermining	NN
cord-289926-y1rjgbui	272	7	region	region	NN
cord-289926-y1rjgbui	272	8	encodes	encode	VBZ
cord-289926-y1rjgbui	272	9	a	a	DT
cord-289926-y1rjgbui	272	10	protein	protein	NN
cord-289926-y1rjgbui	272	11	with	with	IN
cord-289926-y1rjgbui	272	12	homology	homology	NN
cord-289926-y1rjgbui	272	13	to	to	IN
cord-289926-y1rjgbui	272	14	a	a	DT
cord-289926-y1rjgbui	272	15	conserved	conserve	VBN
cord-289926-y1rjgbui	272	16	DNA	dna	NN
cord-289926-y1rjgbui	272	17	-	-	HYPH
cord-289926-y1rjgbui	272	18	binding	bind	VBG
cord-289926-y1rjgbui	272	19	motif	motif	NN
cord-289926-y1rjgbui	272	20	RNA	rna	NN
cord-289926-y1rjgbui	272	21	-	-	HYPH
cord-289926-y1rjgbui	272	22	binding	bind	VBG
cord-289926-y1rjgbui	272	23	proteins	protein	NNS
cord-289926-y1rjgbui	272	24	as	as	IN
cord-289926-y1rjgbui	272	25	regulators	regulator	NNS
cord-289926-y1rjgbui	272	26	of	of	IN
cord-289926-y1rjgbui	272	27	gene	gene	NN
cord-289926-y1rjgbui	272	28	expression	expression	NN
cord-289926-y1rjgbui	272	29	Comparison	Comparison	NNP
cord-289926-y1rjgbui	272	30	in	in	IN
cord-289926-y1rjgbui	272	31	biosequences	biosequence	NNS
cord-289926-y1rjgbui	272	32	Two	two	CD
cord-289926-y1rjgbui	272	33	independent	independent	JJ
cord-289926-y1rjgbui	272	34	nuclear	nuclear	JJ
cord-289926-y1rjgbui	272	35	localization	localization	NN
cord-289926-y1rjgbui	272	36	signals	signal	NNS
cord-289926-y1rjgbui	272	37	are	be	VBP
cord-289926-y1rjgbui	272	38	present	present	JJ
cord-289926-y1rjgbui	272	39	in	in	IN
cord-289926-y1rjgbui	272	40	the	the	DT
cord-289926-y1rjgbui	272	41	DNA	dna	NN
cord-289926-y1rjgbui	272	42	-	-	HYPH
cord-289926-y1rjgbui	272	43	binding	bind	VBG
cord-289926-y1rjgbui	272	44	high	high	JJ
cord-289926-y1rjgbui	272	45	-	-	HYPH
cord-289926-y1rjgbui	272	46	mobility	mobility	NN
cord-289926-y1rjgbui	272	47	group	group	NN
cord-289926-y1rjgbui	272	48	domains	domain	NNS
cord-289926-y1rjgbui	272	49	of	of	IN
cord-289926-y1rjgbui	272	50	SRY	SRY	NNP
cord-289926-y1rjgbui	272	51	and	and	CC
cord-289926-y1rjgbui	272	52	SOX9	SOX9	NNP
cord-289926-y1rjgbui	272	53	RNA	RNA	NNP
cord-289926-y1rjgbui	272	54	recognition	recognition	NN
cord-289926-y1rjgbui	272	55	by	by	IN
cord-289926-y1rjgbui	272	56	an	an	DT
cord-289926-y1rjgbui	272	57	isolated	isolated	JJ
cord-289926-y1rjgbui	272	58	a	a	DT
cord-289926-y1rjgbui	272	59	helix	helix	NN
cord-289926-y1rjgbui	272	60	Structural	structural	JJ
cord-289926-y1rjgbui	272	61	variety	variety	NN
cord-289926-y1rjgbui	272	62	of	of	IN
cord-289926-y1rjgbui	272	63	arginine	arginine	NN
cord-289926-y1rjgbui	272	64	-	-	HYPH
cord-289926-y1rjgbui	272	65	rich	rich	JJ
cord-289926-y1rjgbui	272	66	RNA	rna	NN
cord-289926-y1rjgbui	272	67	-	-	HYPH
cord-289926-y1rjgbui	272	68	binding	bind	VBG
cord-289926-y1rjgbui	272	69	peptides	peptide	NNS
cord-289926-y1rjgbui	272	70	Expression	expression	NN
cord-289926-y1rjgbui	272	71	of	of	IN
cord-289926-y1rjgbui	272	72	the	the	DT
cord-289926-y1rjgbui	272	73	c	c	NNP
cord-289926-y1rjgbui	272	74	-	-	HYPH
cord-289926-y1rjgbui	272	75	myc	myc	NNP
cord-289926-y1rjgbui	272	76	protooncogene	protooncogene	NNP
cord-289926-y1rjgbui	272	77	product	product	NN
cord-289926-y1rjgbui	272	78	in	in	IN
cord-289926-y1rjgbui	272	79	cells	cell	NNS
cord-289926-y1rjgbui	272	80	infected	infect	VBN
cord-289926-y1rjgbui	272	81	with	with	IN
cord-289926-y1rjgbui	272	82	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	272	83	delta	delta	NNP
cord-289926-y1rjgbui	272	84	virus	virus	NN
cord-289926-y1rjgbui	272	85	Immunogenic	immunogenic	JJ
cord-289926-y1rjgbui	272	86	domains	domain	NNS
cord-289926-y1rjgbui	272	87	of	of	IN
cord-289926-y1rjgbui	272	88	hepatitis	hepatitis	NN
cord-289926-y1rjgbui	272	89	delta	delta	NNP
cord-289926-y1rjgbui	272	90	virus	virus	NN
cord-289926-y1rjgbui	272	91	antigen	antigen	NN
cord-289926-y1rjgbui	272	92	:	:	:
cord-289926-y1rjgbui	272	93	peptide	peptide	NN
cord-289926-y1rjgbui	272	94	mapping	mapping	NN
cord-289926-y1rjgbui	272	95	of	of	IN
cord-289926-y1rjgbui	272	96	epitopes	epitope	NNS
cord-289926-y1rjgbui	272	97	recognized	recognize	VBN
cord-289926-y1rjgbui	272	98	by	by	IN
cord-289926-y1rjgbui	272	99	human	human	JJ
cord-289926-y1rjgbui	272	100	and	and	CC
cord-289926-y1rjgbui	272	101	woodchuck	woodchuck	NN
cord-289926-y1rjgbui	272	102	antibodies	antibody	NNS
cord-289926-y1rjgbui	272	103	Structural	structural	JJ
cord-289926-y1rjgbui	272	104	and	and	CC
cord-289926-y1rjgbui	272	105	functional	functional	JJ
cord-289926-y1rjgbui	272	106	properties	property	NNS
cord-289926-y1rjgbui	272	107	of	of	IN
cord-289926-y1rjgbui	272	108	the	the	DT
cord-289926-y1rjgbui	272	109	evolutionary	evolutionary	JJ
cord-289926-y1rjgbui	272	110	ancient	ancient	JJ
cord-289926-y1rjgbui	272	111	Y	Y	NNP
cord-289926-y1rjgbui	272	112	-	-	HYPH
cord-289926-y1rjgbui	272	113	box	box	NN
cord-289926-y1rjgbui	272	114	family	family	NN
cord-289926-y1rjgbui	272	115	of	of	IN
cord-289926-y1rjgbui	272	116	nucleic	nucleic	JJ
cord-289926-y1rjgbui	272	117	acid	acid	NN
cord-289926-y1rjgbui	272	118	binding	bind	VBG
cord-289926-y1rjgbui	272	119	proteins	protein	NNS
cord-289926-y1rjgbui	272	120	Characterization	characterization	NN
cord-289926-y1rjgbui	272	121	of	of	IN
cord-289926-y1rjgbui	272	122	nuclear	nuclear	JJ
cord-289926-y1rjgbui	272	123	targeting	targeting	NN
cord-289926-y1rjgbui	272	124	signal	signal	NN
cord-289926-y1rjgbui	272	125	of	of	IN
cord-289926-y1rjgbui	272	126	hepatitis	hepatitis	NNP
cord-289926-y1rjgbui	272	127	delta	delta	NNP
cord-289926-y1rjgbui	272	128	antigen	antigen	NNP
cord-289926-y1rjgbui	272	129	:	:	:
cord-289926-y1rjgbui	272	130	nuclear	nuclear	JJ
cord-289926-y1rjgbui	272	131	transport	transport	NN
cord-289926-y1rjgbui	272	132	as	as	IN
cord-289926-y1rjgbui	272	133	a	a	DT
cord-289926-y1rjgbui	272	134	protein	protein	NN
cord-289926-y1rjgbui	272	135	complex	complex	NN
cord-289926-y1rjgbui	273	1	The	the	DT
cord-289926-y1rjgbui	273	2	RNA	RNA	NNP
cord-289926-y1rjgbui	273	3	binding	binding	NN
cord-289926-y1rjgbui	273	4	domain	domain	NN
cord-289926-y1rjgbui	273	5	of	of	IN
cord-289926-y1rjgbui	273	6	ribosomal	ribosomal	JJ
cord-289926-y1rjgbui	273	7	protein	protein	NN
cord-289926-y1rjgbui	273	8	L11	L11	NNP
cord-289926-y1rjgbui	273	9	is	be	VBZ
cord-289926-y1rjgbui	273	10	structurally	structurally	RB
cord-289926-y1rjgbui	273	11	similar	similar	JJ
cord-289926-y1rjgbui	273	12	to	to	IN
cord-289926-y1rjgbui	273	13	homeodomains	homeodomains	NNP
cord-289926-y1rjgbui	273	14	Transcription	Transcription	NNP
cord-289926-y1rjgbui	273	15	of	of	IN
cord-289926-y1rjgbui	273	16	circular	circular	JJ
cord-289926-y1rjgbui	273	17	and	and	CC
cord-289926-y1rjgbui	273	18	noncircular	noncircular	JJ
cord-289926-y1rjgbui	273	19	forms	form	NNS
cord-289926-y1rjgbui	273	20	of	of	IN
cord-289926-y1rjgbui	273	21	SRY	SRY	NNP
cord-289926-y1rjgbui	273	22	in	in	IN
cord-289926-y1rjgbui	273	23	mouse	mouse	NN
cord-289926-y1rjgbui	273	24	testes	testis	NNS
cord-289926-y1rjgbui	274	1	We	-PRON-	PRP
cord-289926-y1rjgbui	274	2	are	be	VBP
cord-289926-y1rjgbui	274	3	grateful	grateful	JJ
cord-289926-y1rjgbui	274	4	to	to	IN
cord-289926-y1rjgbui	274	5	D.	D.	NNP
cord-289926-y1rjgbui	274	6	W.	W.	NNP
cord-289926-y1rjgbui	274	7	Smith	Smith	NNP
cord-289926-y1rjgbui	274	8	and	and	CC
cord-289926-y1rjgbui	274	9	T.	T.	NNP
cord-289926-y1rjgbui	274	10	L.	L.	NNP
cord-289926-y1rjgbui	274	11	Bailey	Bailey	NNP
cord-289926-y1rjgbui	274	12	for	for	IN
cord-289926-y1rjgbui	274	13	suggestions	suggestion	NNS
cord-289926-y1rjgbui	274	14	and	and	CC
cord-289926-y1rjgbui	274	15	critical	critical	JJ
cord-289926-y1rjgbui	274	16	reading	reading	NN
cord-289926-y1rjgbui	274	17	of	of	IN
cord-289926-y1rjgbui	274	18	the	the	DT
cord-289926-y1rjgbui	274	19	manuscript	manuscript	NN
cord-289926-y1rjgbui	274	20	.	.	.
cord-289926-y1rjgbui	275	1	This	this	DT
cord-289926-y1rjgbui	275	2	work	work	NN
cord-289926-y1rjgbui	275	3	was	be	VBD
cord-289926-y1rjgbui	275	4	supported	support	VBN
cord-289926-y1rjgbui	275	5	by	by	IN
cord-289926-y1rjgbui	276	1	NIH	NIH	NNP
cord-289926-y1rjgbui	276	2	/	/	SYM
cord-289926-y1rjgbui	276	3	NCRR	NCRR	NNP
cord-289926-y1rjgbui	276	4	grant	grant	NN
cord-289926-y1rjgbui	276	5	RR08605	rr08605	IN
cord-289926-y1rjgbui	276	6	and	and	CC
cord-289926-y1rjgbui	276	7	by	by	IN
cord-289926-y1rjgbui	276	8	NSF	NSF	NNP
cord-289926-y1rjgbui	276	9	grant	grant	VBP
cord-289926-y1rjgbui	276	10	ASC-890285	ASC-890285	NNP
cord-289926-y1rjgbui	276	11	.	.	.
cord-289926-y1rjgbui	277	1	Received	receive	VBN
cord-289926-y1rjgbui	277	2	June	June	NNP
cord-289926-y1rjgbui	277	3	16	16	CD
cord-289926-y1rjgbui	277	4	,	,	,
cord-289926-y1rjgbui	277	5	1998	1998	CD
cord-289926-y1rjgbui	277	6	 	 	_SP