id	sid	tid	token	lemma	pos
cord-316525-uadfehr6	1	1	key	key	JJ
cord-316525-uadfehr6	1	2	:	:	:
cord-316525-uadfehr6	1	3	cord-316525-uadfehr6	cord-316525-uadfehr6	NNP
cord-316525-uadfehr6	1	4	authors	author	NNS
cord-316525-uadfehr6	1	5	:	:	:
cord-316525-uadfehr6	1	6	Zhang	Zhang	NNP
cord-316525-uadfehr6	1	7	,	,	,
cord-316525-uadfehr6	1	8	X.	X.	NNP
cord-316525-uadfehr6	1	9	W.	W.	NNP
cord-316525-uadfehr6	1	10	;	;	:
cord-316525-uadfehr6	1	11	Yap	Yap	NNP
cord-316525-uadfehr6	1	12	,	,	,
cord-316525-uadfehr6	1	13	Y.	Y.	NNP
cord-316525-uadfehr6	1	14	L.	L.	NNP
cord-316525-uadfehr6	1	15	;	;	:
cord-316525-uadfehr6	1	16	Danchin	Danchin	NNP
cord-316525-uadfehr6	1	17	,	,	,
cord-316525-uadfehr6	1	18	A.	a.	NN
cord-316525-uadfehr6	1	19	title	title	NN
cord-316525-uadfehr6	1	20	:	:	:
cord-316525-uadfehr6	2	1	Testing	test	VBG
cord-316525-uadfehr6	2	2	the	the	DT
cord-316525-uadfehr6	2	3	hypothesis	hypothesis	NN
cord-316525-uadfehr6	2	4	of	of	IN
cord-316525-uadfehr6	2	5	a	a	DT
cord-316525-uadfehr6	2	6	recombinant	recombinant	JJ
cord-316525-uadfehr6	2	7	origin	origin	NN
cord-316525-uadfehr6	2	8	of	of	IN
cord-316525-uadfehr6	2	9	the	the	DT
cord-316525-uadfehr6	2	10	SARS	SARS	NNP
cord-316525-uadfehr6	2	11	-	-	HYPH
cord-316525-uadfehr6	2	12	associated	associate	VBN
cord-316525-uadfehr6	2	13	coronavirus	coronavirus	NN
cord-316525-uadfehr6	2	14	date	date	NN
cord-316525-uadfehr6	3	1	:	:	:
cord-316525-uadfehr6	3	2	2004	2004	CD
cord-316525-uadfehr6	3	3	-	-	SYM
cord-316525-uadfehr6	3	4	10	10	CD
cord-316525-uadfehr6	3	5	-	-	SYM
cord-316525-uadfehr6	3	6	11	11	CD
cord-316525-uadfehr6	3	7	journal	journal	NN
cord-316525-uadfehr6	3	8	:	:	:
cord-316525-uadfehr6	4	1	Arch	Arch	NNP
cord-316525-uadfehr6	4	2	Virol	Virol	NNP
cord-316525-uadfehr6	5	1	DOI	DOI	NNP
cord-316525-uadfehr6	5	2	:	:	:
cord-316525-uadfehr6	5	3	10.1007	10.1007	CD
cord-316525-uadfehr6	5	4	/	/	SYM
cord-316525-uadfehr6	5	5	s00705	s00705	CD
cord-316525-uadfehr6	5	6	-	-	HYPH
cord-316525-uadfehr6	5	7	004	004	CD
cord-316525-uadfehr6	5	8	-	-	HYPH
cord-316525-uadfehr6	5	9	0413	0413	CD
cord-316525-uadfehr6	5	10	-	-	SYM
cord-316525-uadfehr6	5	11	9	9	CD
cord-316525-uadfehr6	5	12	sha	sha	NN
cord-316525-uadfehr6	5	13	:	:	:
cord-316525-uadfehr6	6	1	389e155ca041826b82fd8079d545386856110a1b	389e155ca041826b82fd8079d545386856110a1b	CD
cord-316525-uadfehr6	6	2	doc_id	doc_id	CD
cord-316525-uadfehr6	6	3	:	:	:
cord-316525-uadfehr6	6	4	316525	316525	CD
cord-316525-uadfehr6	6	5	cord_uid	cord_uid	NN
cord-316525-uadfehr6	6	6	:	:	:
cord-316525-uadfehr6	7	1	uadfehr6	uadfehr6	JJ
cord-316525-uadfehr6	8	1	The	the	DT
cord-316525-uadfehr6	8	2	origin	origin	NN
cord-316525-uadfehr6	8	3	of	of	IN
cord-316525-uadfehr6	8	4	severe	severe	JJ
cord-316525-uadfehr6	8	5	acute	acute	JJ
cord-316525-uadfehr6	8	6	respiratory	respiratory	JJ
cord-316525-uadfehr6	8	7	syndrome	syndrome	NN
cord-316525-uadfehr6	8	8	-	-	HYPH
cord-316525-uadfehr6	8	9	associated	associate	VBN
cord-316525-uadfehr6	8	10	corona	corona	NN
cord-316525-uadfehr6	8	11	-	-	HYPH
cord-316525-uadfehr6	8	12	virus	virus	NN
cord-316525-uadfehr6	8	13	(	(	-LRB-
cord-316525-uadfehr6	8	14	SARS	SARS	NNP
cord-316525-uadfehr6	8	15	-	-	HYPH
cord-316525-uadfehr6	8	16	CoV	CoV	NNP
cord-316525-uadfehr6	8	17	)	)	-RRB-
cord-316525-uadfehr6	8	18	is	be	VBZ
cord-316525-uadfehr6	8	19	still	still	RB
cord-316525-uadfehr6	8	20	a	a	DT
cord-316525-uadfehr6	8	21	matter	matter	NN
cord-316525-uadfehr6	8	22	of	of	IN
cord-316525-uadfehr6	8	23	speculation	speculation	NN
cord-316525-uadfehr6	8	24	,	,	,
cord-316525-uadfehr6	8	25	although	although	IN
cord-316525-uadfehr6	8	26	more	more	JJR
cord-316525-uadfehr6	8	27	than	than	IN
cord-316525-uadfehr6	8	28	one	one	CD
cord-316525-uadfehr6	8	29	year	year	NN
cord-316525-uadfehr6	8	30	has	have	VBZ
cord-316525-uadfehr6	8	31	passed	pass	VBN
cord-316525-uadfehr6	8	32	since	since	IN
cord-316525-uadfehr6	8	33	the	the	DT
cord-316525-uadfehr6	8	34	onset	onset	NN
cord-316525-uadfehr6	8	35	of	of	IN
cord-316525-uadfehr6	8	36	the	the	DT
cord-316525-uadfehr6	8	37	SARS	SARS	NNP
cord-316525-uadfehr6	8	38	outbreak	outbreak	NN
cord-316525-uadfehr6	8	39	.	.	.
cord-316525-uadfehr6	9	1	In	in	IN
cord-316525-uadfehr6	9	2	this	this	DT
cord-316525-uadfehr6	9	3	study	study	NN
cord-316525-uadfehr6	9	4	,	,	,
cord-316525-uadfehr6	9	5	we	-PRON-	PRP
cord-316525-uadfehr6	9	6	implemented	implement	VBD
cord-316525-uadfehr6	9	7	a	a	DT
cord-316525-uadfehr6	9	8	3-step	3-step	JJ
cord-316525-uadfehr6	9	9	strategy	strategy	NN
cord-316525-uadfehr6	9	10	to	to	TO
cord-316525-uadfehr6	9	11	test	test	VB
cord-316525-uadfehr6	9	12	the	the	DT
cord-316525-uadfehr6	9	13	intriguing	intriguing	JJ
cord-316525-uadfehr6	9	14	hypothesis	hypothesis	NN
cord-316525-uadfehr6	9	15	that	that	IN
cord-316525-uadfehr6	9	16	SARS	SARS	NNP
cord-316525-uadfehr6	9	17	-	-	HYPH
cord-316525-uadfehr6	9	18	CoV	CoV	NNP
cord-316525-uadfehr6	9	19	might	may	MD
cord-316525-uadfehr6	9	20	have	have	VB
cord-316525-uadfehr6	9	21	been	be	VBN
cord-316525-uadfehr6	9	22	derived	derive	VBN
cord-316525-uadfehr6	9	23	from	from	IN
cord-316525-uadfehr6	9	24	a	a	DT
cord-316525-uadfehr6	9	25	recombinant	recombinant	JJ
cord-316525-uadfehr6	9	26	virus	virus	NN
cord-316525-uadfehr6	9	27	.	.	.
cord-316525-uadfehr6	10	1	First	first	RB
cord-316525-uadfehr6	10	2	,	,	,
cord-316525-uadfehr6	10	3	we	-PRON-	PRP
cord-316525-uadfehr6	10	4	blasted	blast	VBD
cord-316525-uadfehr6	10	5	the	the	DT
cord-316525-uadfehr6	10	6	whole	whole	JJ
cord-316525-uadfehr6	10	7	SARS	SARS	NNP
cord-316525-uadfehr6	10	8	-	-	HYPH
cord-316525-uadfehr6	10	9	CoV	CoV	NNP
cord-316525-uadfehr6	10	10	genome	genome	NN
cord-316525-uadfehr6	10	11	against	against	IN
cord-316525-uadfehr6	10	12	a	a	DT
cord-316525-uadfehr6	10	13	virus	virus	NN
cord-316525-uadfehr6	10	14	database	database	NN
cord-316525-uadfehr6	10	15	to	to	TO
cord-316525-uadfehr6	10	16	search	search	VB
cord-316525-uadfehr6	10	17	viruses	virus	NNS
cord-316525-uadfehr6	10	18	of	of	IN
cord-316525-uadfehr6	10	19	interest	interest	NN
cord-316525-uadfehr6	10	20	.	.	.
cord-316525-uadfehr6	11	1	Second	second	RB
cord-316525-uadfehr6	11	2	,	,	,
cord-316525-uadfehr6	11	3	we	-PRON-	PRP
cord-316525-uadfehr6	11	4	employed	employ	VBD
cord-316525-uadfehr6	11	5	7	7	CD
cord-316525-uadfehr6	11	6	recombination	recombination	NN
cord-316525-uadfehr6	11	7	detection	detection	NN
cord-316525-uadfehr6	11	8	techniques	technique	NNS
cord-316525-uadfehr6	11	9	well	well	RB
cord-316525-uadfehr6	11	10	documented	document	VBN
cord-316525-uadfehr6	11	11	in	in	IN
cord-316525-uadfehr6	11	12	successfully	successfully	RB
cord-316525-uadfehr6	11	13	detecting	detect	VBG
cord-316525-uadfehr6	11	14	recombination	recombination	NN
cord-316525-uadfehr6	11	15	events	event	NNS
cord-316525-uadfehr6	11	16	to	to	TO
cord-316525-uadfehr6	11	17	explore	explore	VB
cord-316525-uadfehr6	11	18	the	the	DT
cord-316525-uadfehr6	11	19	presence	presence	NN
cord-316525-uadfehr6	11	20	of	of	IN
cord-316525-uadfehr6	11	21	recombination	recombination	NN
cord-316525-uadfehr6	11	22	in	in	IN
cord-316525-uadfehr6	11	23	SARS	SARS	NNP
cord-316525-uadfehr6	11	24	-	-	HYPH
cord-316525-uadfehr6	11	25	CoV	CoV	NNP
cord-316525-uadfehr6	11	26	genome	genome	NN
cord-316525-uadfehr6	11	27	.	.	.
cord-316525-uadfehr6	12	1	Finally	finally	RB
cord-316525-uadfehr6	12	2	,	,	,
cord-316525-uadfehr6	12	3	we	-PRON-	PRP
cord-316525-uadfehr6	12	4	conducted	conduct	VBD
cord-316525-uadfehr6	12	5	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	12	6	analyses	analysis	NNS
cord-316525-uadfehr6	12	7	to	to	TO
cord-316525-uadfehr6	12	8	further	further	RB
cord-316525-uadfehr6	12	9	explore	explore	VB
cord-316525-uadfehr6	12	10	whether	whether	IN
cord-316525-uadfehr6	12	11	recombination	recombination	NN
cord-316525-uadfehr6	12	12	has	have	VBZ
cord-316525-uadfehr6	12	13	indeed	indeed	RB
cord-316525-uadfehr6	12	14	occurred	occur	VBN
cord-316525-uadfehr6	12	15	in	in	IN
cord-316525-uadfehr6	12	16	the	the	DT
cord-316525-uadfehr6	12	17	course	course	NN
cord-316525-uadfehr6	12	18	of	of	IN
cord-316525-uadfehr6	12	19	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	12	20	history	history	NN
cord-316525-uadfehr6	12	21	predating	predate	VBG
cord-316525-uadfehr6	12	22	the	the	DT
cord-316525-uadfehr6	12	23	emergence	emergence	NN
cord-316525-uadfehr6	12	24	of	of	IN
cord-316525-uadfehr6	12	25	SARS	SARS	NNP
cord-316525-uadfehr6	12	26	-	-	HYPH
cord-316525-uadfehr6	12	27	CoV.	CoV.	NNP
cord-316525-uadfehr6	13	1	Surprisingly	surprisingly	RB
cord-316525-uadfehr6	13	2	,	,	,
cord-316525-uadfehr6	13	3	we	-PRON-	PRP
cord-316525-uadfehr6	13	4	found	find	VBD
cord-316525-uadfehr6	13	5	that	that	IN
cord-316525-uadfehr6	13	6	7	7	CD
cord-316525-uadfehr6	13	7	putative	putative	JJ
cord-316525-uadfehr6	13	8	recombination	recombination	NN
cord-316525-uadfehr6	13	9	regions	region	NNS
cord-316525-uadfehr6	13	10	,	,	,
cord-316525-uadfehr6	13	11	located	locate	VBN
cord-316525-uadfehr6	13	12	in	in	IN
cord-316525-uadfehr6	13	13	Replicase	Replicase	NNP
cord-316525-uadfehr6	13	14	1ab	1ab	NN
cord-316525-uadfehr6	13	15	and	and	CC
cord-316525-uadfehr6	13	16	Spike	Spike	NNP
cord-316525-uadfehr6	13	17	protein	protein	NN
cord-316525-uadfehr6	13	18	,	,	,
cord-316525-uadfehr6	13	19	exist	exist	VBP
cord-316525-uadfehr6	13	20	between	between	IN
cord-316525-uadfehr6	13	21	SARS	SARS	NNP
cord-316525-uadfehr6	13	22	-	-	HYPH
cord-316525-uadfehr6	13	23	CoV	CoV	NNP
cord-316525-uadfehr6	13	24	and	and	CC
cord-316525-uadfehr6	13	25	other	other	JJ
cord-316525-uadfehr6	13	26	6	6	CD
cord-316525-uadfehr6	13	27	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	13	28	:	:	:
cord-316525-uadfehr6	13	29	porcine	porcine	JJ
cord-316525-uadfehr6	13	30	epidemic	epidemic	NN
cord-316525-uadfehr6	13	31	diarrhea	diarrhea	NN
cord-316525-uadfehr6	13	32	virus	virus	NN
cord-316525-uadfehr6	13	33	(	(	-LRB-
cord-316525-uadfehr6	13	34	PEDV	PEDV	NNP
cord-316525-uadfehr6	13	35	)	)	-RRB-
cord-316525-uadfehr6	13	36	,	,	,
cord-316525-uadfehr6	13	37	transmissible	transmissible	JJ
cord-316525-uadfehr6	13	38	gastroenteritis	gastroenteritis	NN
cord-316525-uadfehr6	13	39	virus	virus	NN
cord-316525-uadfehr6	13	40	(	(	-LRB-
cord-316525-uadfehr6	13	41	TGEV	TGEV	NNP
cord-316525-uadfehr6	13	42	)	)	-RRB-
cord-316525-uadfehr6	13	43	,	,	,
cord-316525-uadfehr6	13	44	bovine	bovine	JJ
cord-316525-uadfehr6	13	45	coronavirus	coronavirus	NN
cord-316525-uadfehr6	13	46	(	(	-LRB-
cord-316525-uadfehr6	13	47	BCoV	BCoV	NNP
cord-316525-uadfehr6	13	48	)	)	-RRB-
cord-316525-uadfehr6	13	49	,	,	,
cord-316525-uadfehr6	13	50	human	human	JJ
cord-316525-uadfehr6	13	51	coronavirus	coronavirus	NN
cord-316525-uadfehr6	13	52	229E	229e	CD
cord-316525-uadfehr6	13	53	(	(	-LRB-
cord-316525-uadfehr6	13	54	HCoV	HCoV	NNP
cord-316525-uadfehr6	13	55	)	)	-RRB-
cord-316525-uadfehr6	13	56	,	,	,
cord-316525-uadfehr6	13	57	murine	murine	JJ
cord-316525-uadfehr6	13	58	hepatitis	hepatitis	NN
cord-316525-uadfehr6	13	59	virus	virus	NN
cord-316525-uadfehr6	13	60	(	(	-LRB-
cord-316525-uadfehr6	13	61	MHV	MHV	NNP
cord-316525-uadfehr6	13	62	)	)	-RRB-
cord-316525-uadfehr6	13	63	,	,	,
cord-316525-uadfehr6	13	64	and	and	CC
cord-316525-uadfehr6	13	65	avian	avian	JJ
cord-316525-uadfehr6	13	66	infectious	infectious	JJ
cord-316525-uadfehr6	13	67	bronchitis	bronchitis	NN
cord-316525-uadfehr6	13	68	virus	virus	NN
cord-316525-uadfehr6	13	69	(	(	-LRB-
cord-316525-uadfehr6	13	70	IBV	IBV	NNP
cord-316525-uadfehr6	13	71	)	)	-RRB-
cord-316525-uadfehr6	13	72	.	.	.
cord-316525-uadfehr6	14	1	Thus	thus	RB
cord-316525-uadfehr6	14	2	,	,	,
cord-316525-uadfehr6	14	3	our	-PRON-	PRP$
cord-316525-uadfehr6	14	4	analyses	analysis	NNS
cord-316525-uadfehr6	14	5	substantiate	substantiate	VBP
cord-316525-uadfehr6	14	6	the	the	DT
cord-316525-uadfehr6	14	7	presence	presence	NN
cord-316525-uadfehr6	14	8	of	of	IN
cord-316525-uadfehr6	14	9	recombination	recombination	NN
cord-316525-uadfehr6	14	10	events	event	NNS
cord-316525-uadfehr6	14	11	in	in	IN
cord-316525-uadfehr6	14	12	history	history	NN
cord-316525-uadfehr6	14	13	that	that	WDT
cord-316525-uadfehr6	14	14	led	lead	VBD
cord-316525-uadfehr6	14	15	to	to	IN
cord-316525-uadfehr6	14	16	the	the	DT
cord-316525-uadfehr6	14	17	SARS	SARS	NNP
cord-316525-uadfehr6	14	18	-	-	HYPH
cord-316525-uadfehr6	14	19	CoV	CoV	NNP
cord-316525-uadfehr6	14	20	genome	genome	NN
cord-316525-uadfehr6	14	21	.	.	.
cord-316525-uadfehr6	15	1	Like	like	IN
cord-316525-uadfehr6	15	2	the	the	DT
cord-316525-uadfehr6	15	3	other	other	JJ
cord-316525-uadfehr6	15	4	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	15	5	used	use	VBN
cord-316525-uadfehr6	15	6	in	in	IN
cord-316525-uadfehr6	15	7	the	the	DT
cord-316525-uadfehr6	15	8	analysis	analysis	NN
cord-316525-uadfehr6	15	9	,	,	,
cord-316525-uadfehr6	15	10	SARS	SARS	NNP
cord-316525-uadfehr6	15	11	-	-	HYPH
cord-316525-uadfehr6	15	12	CoV	CoV	NNP
cord-316525-uadfehr6	15	13	is	be	VBZ
cord-316525-uadfehr6	15	14	also	also	RB
cord-316525-uadfehr6	15	15	a	a	DT
cord-316525-uadfehr6	15	16	mosaic	mosaic	JJ
cord-316525-uadfehr6	15	17	structure	structure	NN
cord-316525-uadfehr6	15	18	.	.	.
cord-316525-uadfehr6	16	1	SARS	SARS	NNP
cord-316525-uadfehr6	16	2	,	,	,
cord-316525-uadfehr6	16	3	a	a	DT
cord-316525-uadfehr6	16	4	new	new	JJ
cord-316525-uadfehr6	16	5	disease	disease	NN
cord-316525-uadfehr6	16	6	characterized	characterize	VBN
cord-316525-uadfehr6	16	7	by	by	IN
cord-316525-uadfehr6	16	8	high	high	JJ
cord-316525-uadfehr6	16	9	fever	fever	NN
cord-316525-uadfehr6	16	10	,	,	,
cord-316525-uadfehr6	16	11	malaise	malaise	NN
cord-316525-uadfehr6	16	12	,	,	,
cord-316525-uadfehr6	16	13	rigor	rigor	NN
cord-316525-uadfehr6	16	14	,	,	,
cord-316525-uadfehr6	16	15	headache	headache	NN
cord-316525-uadfehr6	16	16	and	and	CC
cord-316525-uadfehr6	16	17	non	non	JJ
cord-316525-uadfehr6	16	18	-	-	JJ
cord-316525-uadfehr6	16	19	productive	productive	JJ
cord-316525-uadfehr6	16	20	cough	cough	NN
cord-316525-uadfehr6	16	21	,	,	,
cord-316525-uadfehr6	16	22	has	have	VBZ
cord-316525-uadfehr6	16	23	spread	spread	VBN
cord-316525-uadfehr6	16	24	to	to	IN
cord-316525-uadfehr6	16	25	over	over	IN
cord-316525-uadfehr6	16	26	30	30	CD
cord-316525-uadfehr6	16	27	countries	country	NNS
cord-316525-uadfehr6	16	28	with	with	IN
cord-316525-uadfehr6	16	29	around	around	IN
cord-316525-uadfehr6	16	30	8	8	CD
cord-316525-uadfehr6	16	31	%	%	NN
cord-316525-uadfehr6	16	32	of	of	IN
cord-316525-uadfehr6	16	33	mortality	mortality	NN
cord-316525-uadfehr6	16	34	rate	rate	NN
cord-316525-uadfehr6	16	35	on	on	IN
cord-316525-uadfehr6	16	36	average	average	JJ
cord-316525-uadfehr6	16	37	.	.	.
cord-316525-uadfehr6	17	1	Sequence	sequence	NN
cord-316525-uadfehr6	17	2	analysis	analysis	NN
cord-316525-uadfehr6	17	3	of	of	IN
cord-316525-uadfehr6	17	4	SARS	SARS	NNP
cord-316525-uadfehr6	17	5	coronavirus	coronavirus	NN
cord-316525-uadfehr6	17	6	(	(	-LRB-
cord-316525-uadfehr6	17	7	SARS	SARS	NNP
cord-316525-uadfehr6	17	8	-	-	HYPH
cord-316525-uadfehr6	17	9	CoV	CoV	NNP
cord-316525-uadfehr6	17	10	)	)	-RRB-
cord-316525-uadfehr6	17	11	[	[	-LRB-
cord-316525-uadfehr6	17	12	17	17	CD
cord-316525-uadfehr6	17	13	,	,	,
cord-316525-uadfehr6	17	14	25	25	CD
cord-316525-uadfehr6	17	15	]	]	-RRB-
cord-316525-uadfehr6	17	16	showed	show	VBD
cord-316525-uadfehr6	17	17	that	that	IN
cord-316525-uadfehr6	17	18	it	-PRON-	PRP
cord-316525-uadfehr6	17	19	is	be	VBZ
cord-316525-uadfehr6	17	20	a	a	DT
cord-316525-uadfehr6	17	21	novel	novel	JJ
cord-316525-uadfehr6	17	22	coronavirus	coronavirus	NN
cord-316525-uadfehr6	17	23	[	[	-LRB-
cord-316525-uadfehr6	17	24	12	12	CD
cord-316525-uadfehr6	17	25	]	]	-RRB-
cord-316525-uadfehr6	17	26	.	.	.
cord-316525-uadfehr6	18	1	Anand	Anand	NNP
cord-316525-uadfehr6	18	2	et	et	NNP
cord-316525-uadfehr6	18	3	al	al	NNP
cord-316525-uadfehr6	18	4	.	.	.
cord-316525-uadfehr6	19	1	[	[	-LRB-
cord-316525-uadfehr6	19	2	1	1	CD
cord-316525-uadfehr6	19	3	]	]	-RRB-
cord-316525-uadfehr6	19	4	reported	report	VBD
cord-316525-uadfehr6	19	5	a	a	DT
cord-316525-uadfehr6	19	6	three	three	CD
cord-316525-uadfehr6	19	7	-	-	HYPH
cord-316525-uadfehr6	19	8	dimensional	dimensional	JJ
cord-316525-uadfehr6	19	9	model	model	NN
cord-316525-uadfehr6	19	10	of	of	IN
cord-316525-uadfehr6	19	11	SARS	SARS	NNP
cord-316525-uadfehr6	19	12	-	-	HYPH
cord-316525-uadfehr6	19	13	CoV	CoV	NNP
cord-316525-uadfehr6	19	14	main	main	JJ
cord-316525-uadfehr6	19	15	proteinase	proteinase	NN
cord-316525-uadfehr6	19	16	and	and	CC
cord-316525-uadfehr6	19	17	suggested	suggest	VBD
cord-316525-uadfehr6	19	18	that	that	IN
cord-316525-uadfehr6	19	19	 	 	_SP
cord-316525-uadfehr6	19	20	There	there	EX
cord-316525-uadfehr6	19	21	are	be	VBP
cord-316525-uadfehr6	19	22	a	a	DT
cord-316525-uadfehr6	19	23	number	number	NN
cord-316525-uadfehr6	19	24	of	of	IN
cord-316525-uadfehr6	19	25	methods	method	NNS
cord-316525-uadfehr6	19	26	and	and	CC
cord-316525-uadfehr6	19	27	software	software	NN
cord-316525-uadfehr6	19	28	packages	package	NNS
cord-316525-uadfehr6	19	29	that	that	WDT
cord-316525-uadfehr6	19	30	have	have	VBP
cord-316525-uadfehr6	19	31	been	be	VBN
cord-316525-uadfehr6	19	32	developed	develop	VBN
cord-316525-uadfehr6	19	33	for	for	IN
cord-316525-uadfehr6	19	34	detection	detection	NN
cord-316525-uadfehr6	19	35	of	of	IN
cord-316525-uadfehr6	19	36	recombination	recombination	NN
cord-316525-uadfehr6	19	37	events	event	NNS
cord-316525-uadfehr6	19	38	in	in	IN
cord-316525-uadfehr6	19	39	DNA	dna	NN
cord-316525-uadfehr6	19	40	sequences	sequence	NNS
cord-316525-uadfehr6	19	41	.	.	.
cord-316525-uadfehr6	20	1	The	the	DT
cord-316525-uadfehr6	20	2	performance	performance	NN
cord-316525-uadfehr6	20	3	of	of	IN
cord-316525-uadfehr6	20	4	these	these	DT
cord-316525-uadfehr6	20	5	methods	method	NNS
cord-316525-uadfehr6	20	6	has	have	VBZ
cord-316525-uadfehr6	20	7	been	be	VBN
cord-316525-uadfehr6	20	8	extensively	extensively	RB
cord-316525-uadfehr6	20	9	evaluated	evaluate	VBN
cord-316525-uadfehr6	20	10	and	and	CC
cord-316525-uadfehr6	20	11	compared	compare	VBN
cord-316525-uadfehr6	20	12	on	on	IN
cord-316525-uadfehr6	20	13	simulated	simulated	JJ
cord-316525-uadfehr6	20	14	and	and	CC
cord-316525-uadfehr6	20	15	real	real	JJ
cord-316525-uadfehr6	20	16	data	datum	NNS
cord-316525-uadfehr6	20	17	[	[	-LRB-
cord-316525-uadfehr6	20	18	23	23	CD
cord-316525-uadfehr6	20	19	,	,	,
cord-316525-uadfehr6	20	20	24	24	CD
cord-316525-uadfehr6	20	21	]	]	-RRB-
cord-316525-uadfehr6	20	22	.	.	.
cord-316525-uadfehr6	21	1	In	in	IN
cord-316525-uadfehr6	21	2	the	the	DT
cord-316525-uadfehr6	21	3	present	present	JJ
cord-316525-uadfehr6	21	4	study	study	NN
cord-316525-uadfehr6	21	5	we	-PRON-	PRP
cord-316525-uadfehr6	21	6	applied	apply	VBD
cord-316525-uadfehr6	21	7	these	these	DT
cord-316525-uadfehr6	21	8	methods	method	NNS
cord-316525-uadfehr6	21	9	to	to	IN
cord-316525-uadfehr6	21	10	RNA	RNA	NNP
cord-316525-uadfehr6	21	11	viruses	virus	NNS
cord-316525-uadfehr6	21	12	.	.	.
cord-316525-uadfehr6	22	1	SARS	SARS	NNP
cord-316525-uadfehr6	22	2	-	-	HYPH
cord-316525-uadfehr6	22	3	CoV	CoV	NNP
cord-316525-uadfehr6	22	4	and	and	CC
cord-316525-uadfehr6	22	5	other	other	JJ
cord-316525-uadfehr6	22	6	6	6	CD
cord-316525-uadfehr6	22	7	coronavirus	coronavirus	NN
cord-316525-uadfehr6	22	8	genomes	genome	NNS
cord-316525-uadfehr6	22	9	(	(	-LRB-
cord-316525-uadfehr6	22	10	SARS	SARS	NNP
cord-316525-uadfehr6	22	11	-	-	HYPH
cord-316525-uadfehr6	22	12	CoV	CoV	NNP
cord-316525-uadfehr6	22	13	,	,	,
cord-316525-uadfehr6	22	14	IBV	IBV	NNP
cord-316525-uadfehr6	22	15	,	,	,
cord-316525-uadfehr6	22	16	BCoV	BCoV	NNP
cord-316525-uadfehr6	22	17	,	,	,
cord-316525-uadfehr6	22	18	HCoV	HCoV	NNP
cord-316525-uadfehr6	22	19	,	,	,
cord-316525-uadfehr6	22	20	MHV	MHV	NNP
cord-316525-uadfehr6	22	21	,	,	,
cord-316525-uadfehr6	22	22	PEDV	PEDV	NNP
cord-316525-uadfehr6	22	23	,	,	,
cord-316525-uadfehr6	22	24	TGEV	TGEV	NNP
cord-316525-uadfehr6	22	25	)	)	-RRB-
cord-316525-uadfehr6	22	26	were	be	VBD
cord-316525-uadfehr6	22	27	first	first	RB
cord-316525-uadfehr6	22	28	aligned	align	VBN
cord-316525-uadfehr6	22	29	using	use	VBG
cord-316525-uadfehr6	22	30	CLUSTALW	CLUSTALW	NNP
cord-316525-uadfehr6	22	31	[	[	-LRB-
cord-316525-uadfehr6	22	32	33	33	CD
cord-316525-uadfehr6	22	33	]	]	-RRB-
cord-316525-uadfehr6	22	34	.	.	.
cord-316525-uadfehr6	23	1	Sites	site	NNS
cord-316525-uadfehr6	23	2	with	with	IN
cord-316525-uadfehr6	23	3	gaps	gap	NNS
cord-316525-uadfehr6	23	4	were	be	VBD
cord-316525-uadfehr6	23	5	removed	remove	VBN
cord-316525-uadfehr6	23	6	and	and	CC
cord-316525-uadfehr6	23	7	a	a	DT
cord-316525-uadfehr6	23	8	25077-nt	25077-nt	JJ
cord-316525-uadfehr6	23	9	alignment	alignment	NN
cord-316525-uadfehr6	23	10	was	be	VBD
cord-316525-uadfehr6	23	11	generated	generate	VBN
cord-316525-uadfehr6	23	12	.	.	.
cord-316525-uadfehr6	24	1	Subsequently	subsequently	RB
cord-316525-uadfehr6	24	2	,	,	,
cord-316525-uadfehr6	24	3	seven	seven	CD
cord-316525-uadfehr6	24	4	methods	method	NNS
cord-316525-uadfehr6	24	5	were	be	VBD
cord-316525-uadfehr6	24	6	employed	employ	VBN
cord-316525-uadfehr6	24	7	to	to	TO
cord-316525-uadfehr6	24	8	detect	detect	VB
cord-316525-uadfehr6	24	9	the	the	DT
cord-316525-uadfehr6	24	10	occurrence	occurrence	NN
cord-316525-uadfehr6	24	11	of	of	IN
cord-316525-uadfehr6	24	12	recombination	recombination	NN
cord-316525-uadfehr6	24	13	(	(	-LRB-
cord-316525-uadfehr6	24	14	see	see	VB
cord-316525-uadfehr6	24	15	corresponding	corresponding	JJ
cord-316525-uadfehr6	24	16	reference	reference	NN
cord-316525-uadfehr6	24	17	in	in	IN
cord-316525-uadfehr6	24	18	parenthesis	parenthesis	NN
cord-316525-uadfehr6	24	19	for	for	IN
cord-316525-uadfehr6	24	20	details	detail	NNS
cord-316525-uadfehr6	24	21	of	of	IN
cord-316525-uadfehr6	24	22	each	each	DT
cord-316525-uadfehr6	24	23	method	method	NN
cord-316525-uadfehr6	24	24	)	)	-RRB-
cord-316525-uadfehr6	25	1	:	:	:
cord-316525-uadfehr6	25	2	BOOTSCAN	BOOTSCAN	NNP
cord-316525-uadfehr6	25	3	[	[	-LRB-
cord-316525-uadfehr6	25	4	26	26	CD
cord-316525-uadfehr6	25	5	]	]	-RRB-
cord-316525-uadfehr6	25	6	,	,	,
cord-316525-uadfehr6	25	7	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	25	8	[	[	-LRB-
cord-316525-uadfehr6	25	9	28	28	CD
cord-316525-uadfehr6	25	10	]	]	-RRB-
cord-316525-uadfehr6	25	11	,	,	,
cord-316525-uadfehr6	25	12	DSS	DSS	NNP
cord-316525-uadfehr6	25	13	(	(	-LRB-
cord-316525-uadfehr6	25	14	Difference	difference	NN
cord-316525-uadfehr6	25	15	of	of	IN
cord-316525-uadfehr6	25	16	Sums	Sums	NNPS
cord-316525-uadfehr6	25	17	of	of	IN
cord-316525-uadfehr6	25	18	Squares	square	NNS
cord-316525-uadfehr6	25	19	)	)	-RRB-
cord-316525-uadfehr6	25	20	[	[	-LRB-
cord-316525-uadfehr6	25	21	20	20	CD
cord-316525-uadfehr6	25	22	]	]	-RRB-
cord-316525-uadfehr6	25	23	,	,	.
cord-316525-uadfehr6	26	1	HMM	hmm	UH
cord-316525-uadfehr6	27	1	(	(	-LRB-
cord-316525-uadfehr6	27	2	Hidden	hidden	JJ
cord-316525-uadfehr6	27	3	Markov	Markov	NNP
cord-316525-uadfehr6	27	4	Model	Model	NNP
cord-316525-uadfehr6	27	5	)	)	-RRB-
cord-316525-uadfehr6	28	1	[	[	-LRB-
cord-316525-uadfehr6	28	2	8	8	CD
cord-316525-uadfehr6	28	3	]	]	-RRB-
cord-316525-uadfehr6	28	4	,	,	,
cord-316525-uadfehr6	28	5	MAXCHI	MAXCHI	NNP
cord-316525-uadfehr6	29	1	(	(	-LRB-
cord-316525-uadfehr6	29	2	Maximum	Maximum	NNP
cord-316525-uadfehr6	29	3	Chi	Chi	NNP
cord-316525-uadfehr6	29	4	-	-	HYPH
cord-316525-uadfehr6	29	5	Square	Square	NNP
cord-316525-uadfehr6	29	6	method	method	NN
cord-316525-uadfehr6	29	7	)	)	-RRB-
cord-316525-uadfehr6	29	8	[	[	-LRB-
cord-316525-uadfehr6	29	9	19	19	CD
cord-316525-uadfehr6	29	10	]	]	-RRB-
cord-316525-uadfehr6	29	11	,	,	,
cord-316525-uadfehr6	29	12	PDM	PDM	NNP
cord-316525-uadfehr6	29	13	(	(	-LRB-
cord-316525-uadfehr6	29	14	Probabilistic	Probabilistic	NNP
cord-316525-uadfehr6	29	15	Divergence	Divergence	NNP
cord-316525-uadfehr6	29	16	Measures	Measures	NNPS
cord-316525-uadfehr6	29	17	)	)	-RRB-
cord-316525-uadfehr6	29	18	[	[	-LRB-
cord-316525-uadfehr6	29	19	9	9	CD
cord-316525-uadfehr6	29	20	]	]	-RRB-
cord-316525-uadfehr6	29	21	,	,	,
cord-316525-uadfehr6	29	22	RDP	RDP	NNP
cord-316525-uadfehr6	29	23	(	(	-LRB-
cord-316525-uadfehr6	29	24	Recombination	Recombination	NNP
cord-316525-uadfehr6	29	25	Detection	Detection	NNP
cord-316525-uadfehr6	29	26	Program	Program	NNP
cord-316525-uadfehr6	29	27	)	)	-RRB-
cord-316525-uadfehr6	30	1	[	[	-LRB-
cord-316525-uadfehr6	30	2	18	18	CD
cord-316525-uadfehr6	30	3	]	]	-RRB-
cord-316525-uadfehr6	30	4	.	.	.
cord-316525-uadfehr6	31	1	BOOTSCAN	BOOTSCAN	NNP
cord-316525-uadfehr6	31	2	,	,	,
cord-316525-uadfehr6	31	3	MAXCHI	MAXCHI	NNP
cord-316525-uadfehr6	31	4	and	and	CC
cord-316525-uadfehr6	31	5	RDP	RDP	NNP
cord-316525-uadfehr6	31	6	are	be	VBP
cord-316525-uadfehr6	31	7	implemented	implement	VBN
cord-316525-uadfehr6	31	8	in	in	IN
cord-316525-uadfehr6	31	9	RDP	RDP	NNP
cord-316525-uadfehr6	31	10	software	software	NN
cord-316525-uadfehr6	31	11	package	package	NN
cord-316525-uadfehr6	31	12	,	,	,
cord-316525-uadfehr6	31	13	http://web.uct.ac.za/depts/microbiology/microdescription.htm	http://web.uct.ac.za/depts/microbiology/microdescription.htm	ADD
cord-316525-uadfehr6	31	14	.	.	.
cord-316525-uadfehr6	32	1	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	32	2	is	be	VBZ
cord-316525-uadfehr6	32	3	implemented	implement	VBN
cord-316525-uadfehr6	32	4	in	in	IN
cord-316525-uadfehr6	32	5	the	the	DT
cord-316525-uadfehr6	32	6	program	program	NN
cord-316525-uadfehr6	32	7	,	,	,
cord-316525-uadfehr6	32	8	http://www.math.wustl.edu/∼sawyer/geneconv/.	http://www.math.wustl.edu/∼sawyer/geneconv/.	NNP
cord-316525-uadfehr6	32	9	DSS	DSS	NNP
cord-316525-uadfehr6	32	10	,	,	,
cord-316525-uadfehr6	32	11	HMM	HMM	NNP
cord-316525-uadfehr6	32	12	and	and	CC
cord-316525-uadfehr6	32	13	PDM	PDM	NNP
cord-316525-uadfehr6	32	14	are	be	VBP
cord-316525-uadfehr6	32	15	implemented	implement	VBN
cord-316525-uadfehr6	32	16	in	in	IN
cord-316525-uadfehr6	32	17	TOPALi	TOPALi	NNP
cord-316525-uadfehr6	32	18	software	software	NN
cord-316525-uadfehr6	32	19	package	package	NN
cord-316525-uadfehr6	32	20	,	,	,
cord-316525-uadfehr6	32	21	http://www.bioss.sari.ac.uk/software.html	http://www.bioss.sari.ac.uk/software.html	''
cord-316525-uadfehr6	32	22	.	.	.
cord-316525-uadfehr6	33	1	Basically	basically	RB
cord-316525-uadfehr6	33	2	default	default	NN
cord-316525-uadfehr6	33	3	parameter	parameter	NN
cord-316525-uadfehr6	33	4	settings	setting	NNS
cord-316525-uadfehr6	33	5	were	be	VBD
cord-316525-uadfehr6	33	6	used	use	VBN
cord-316525-uadfehr6	33	7	in	in	IN
cord-316525-uadfehr6	33	8	all	all	PDT
cord-316525-uadfehr6	33	9	the	the	DT
cord-316525-uadfehr6	33	10	programs	program	NNS
cord-316525-uadfehr6	33	11	,	,	,
cord-316525-uadfehr6	33	12	except	except	IN
cord-316525-uadfehr6	33	13	the	the	DT
cord-316525-uadfehr6	33	14	following	follow	VBG
cord-316525-uadfehr6	33	15	values	value	NNS
cord-316525-uadfehr6	33	16	:	:	:
cord-316525-uadfehr6	33	17	gscale	gscale	NN
cord-316525-uadfehr6	33	18	=	=	SYM
cord-316525-uadfehr6	33	19	1	1	CD
cord-316525-uadfehr6	33	20	(	(	-LRB-
cord-316525-uadfehr6	33	21	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	33	22	)	)	-RRB-
cord-316525-uadfehr6	33	23	,	,	,
cord-316525-uadfehr6	33	24	internal	internal	JJ
cord-316525-uadfehr6	33	25	and	and	CC
cord-316525-uadfehr6	33	26	external	external	JJ
cord-316525-uadfehr6	33	27	references	reference	NNS
cord-316525-uadfehr6	33	28	(	(	-LRB-
cord-316525-uadfehr6	33	29	RDP	RDP	NNP
cord-316525-uadfehr6	33	30	)	)	-RRB-
cord-316525-uadfehr6	33	31	,	,	,
cord-316525-uadfehr6	33	32	window	window	NN
cord-316525-uadfehr6	33	33	size	size	NN
cord-316525-uadfehr6	33	34	=	=	SYM
cord-316525-uadfehr6	33	35	300	300	CD
cord-316525-uadfehr6	33	36	and	and	CC
cord-316525-uadfehr6	33	37	step	step	NN
cord-316525-uadfehr6	33	38	=	=	SYM
cord-316525-uadfehr6	33	39	10	10	CD
cord-316525-uadfehr6	33	40	(	(	-LRB-
cord-316525-uadfehr6	33	41	DSS	DSS	NNP
cord-316525-uadfehr6	33	42	,	,	,
cord-316525-uadfehr6	33	43	HMM	HMM	NNP
cord-316525-uadfehr6	33	44	and	and	CC
cord-316525-uadfehr6	33	45	PDM	PDM	NNP
cord-316525-uadfehr6	33	46	)	)	-RRB-
cord-316525-uadfehr6	33	47	.	.	.
cord-316525-uadfehr6	34	1	After	after	IN
cord-316525-uadfehr6	34	2	potential	potential	JJ
cord-316525-uadfehr6	34	3	recombination	recombination	NN
cord-316525-uadfehr6	34	4	events	event	NNS
cord-316525-uadfehr6	34	5	were	be	VBD
cord-316525-uadfehr6	34	6	identified	identify	VBN
cord-316525-uadfehr6	34	7	by	by	IN
cord-316525-uadfehr6	34	8	at	at	RB
cord-316525-uadfehr6	34	9	least	least	JJS
cord-316525-uadfehr6	34	10	3	3	CD
cord-316525-uadfehr6	34	11	methods	method	NNS
cord-316525-uadfehr6	34	12	above	above	RB
cord-316525-uadfehr6	34	13	,	,	,
cord-316525-uadfehr6	34	14	separate	separate	JJ
cord-316525-uadfehr6	34	15	neighbor	neighbor	NN
cord-316525-uadfehr6	34	16	joining	join	VBG
cord-316525-uadfehr6	34	17	trees	tree	NNS
cord-316525-uadfehr6	34	18	were	be	VBD
cord-316525-uadfehr6	34	19	constructed	construct	VBN
cord-316525-uadfehr6	34	20	for	for	IN
cord-316525-uadfehr6	34	21	each	each	DT
cord-316525-uadfehr6	34	22	putative	putative	JJ
cord-316525-uadfehr6	34	23	recombination	recombination	NN
cord-316525-uadfehr6	34	24	region	region	NN
cord-316525-uadfehr6	34	25	to	to	TO
cord-316525-uadfehr6	34	26	better	better	RB
cord-316525-uadfehr6	34	27	evaluate	evaluate	VB
cord-316525-uadfehr6	34	28	the	the	DT
cord-316525-uadfehr6	34	29	evidence	evidence	NN
cord-316525-uadfehr6	34	30	for	for	IN
cord-316525-uadfehr6	34	31	conflicting	conflict	VBG
cord-316525-uadfehr6	34	32	evolutionary	evolutionary	JJ
cord-316525-uadfehr6	34	33	histories	history	NNS
cord-316525-uadfehr6	34	34	of	of	IN
cord-316525-uadfehr6	34	35	different	different	JJ
cord-316525-uadfehr6	34	36	sequence	sequence	NN
cord-316525-uadfehr6	34	37	regions	region	NNS
cord-316525-uadfehr6	34	38	.	.	.
cord-316525-uadfehr6	35	1	All	all	DT
cord-316525-uadfehr6	35	2	trees	tree	NNS
cord-316525-uadfehr6	35	3	were	be	VBD
cord-316525-uadfehr6	35	4	produced	produce	VBN
cord-316525-uadfehr6	35	5	with	with	IN
cord-316525-uadfehr6	35	6	TOPALi	TOPALi	NNS
cord-316525-uadfehr6	35	7	mentioned	mention	VBN
cord-316525-uadfehr6	35	8	above	above	RB
cord-316525-uadfehr6	35	9	.	.	.
cord-316525-uadfehr6	36	1	Table	table	NN
cord-316525-uadfehr6	36	2	2	2	CD
cord-316525-uadfehr6	36	3	summarizes	summarize	VBZ
cord-316525-uadfehr6	36	4	the	the	DT
cord-316525-uadfehr6	36	5	results	result	NNS
cord-316525-uadfehr6	36	6	of	of	IN
cord-316525-uadfehr6	36	7	BOOTSCAN	BOOTSCAN	NNP
cord-316525-uadfehr6	36	8	analysis	analysis	NN
cord-316525-uadfehr6	36	9	with	with	IN
cord-316525-uadfehr6	36	10	100	100	CD
cord-316525-uadfehr6	36	11	%	%	NN
cord-316525-uadfehr6	36	12	bootstrap	bootstrap	NN
cord-316525-uadfehr6	36	13	support	support	NN
cord-316525-uadfehr6	36	14	and	and	CC
cord-316525-uadfehr6	36	15	significant	significant	JJ
cord-316525-uadfehr6	36	16	P	p	NN
cord-316525-uadfehr6	36	17	-	-	HYPH
cord-316525-uadfehr6	36	18	value	value	NN
cord-316525-uadfehr6	36	19	(	(	-LRB-
cord-316525-uadfehr6	36	20	<	<	XX
cord-316525-uadfehr6	36	21	0.05	0.05	CD
cord-316525-uadfehr6	36	22	for	for	IN
cord-316525-uadfehr6	36	23	uncorrected	uncorrected	JJ
cord-316525-uadfehr6	36	24	and	and	CC
cord-316525-uadfehr6	36	25	MC	MC	NNP
cord-316525-uadfehr6	36	26	corrected	correct	VBD
cord-316525-uadfehr6	36	27	Pvalue	Pvalue	NNP
cord-316525-uadfehr6	36	28	)	)	-RRB-
cord-316525-uadfehr6	36	29	.	.	.
cord-316525-uadfehr6	37	1	Two	two	CD
cord-316525-uadfehr6	37	2	regions	region	NNS
cord-316525-uadfehr6	37	3	(	(	-LRB-
cord-316525-uadfehr6	37	4	13151	13151	CD
cord-316525-uadfehr6	37	5	-	-	SYM
cord-316525-uadfehr6	37	6	13299	13299	CD
cord-316525-uadfehr6	37	7	and	and	CC
cord-316525-uadfehr6	37	8	16051	16051	CD
cord-316525-uadfehr6	37	9	-	-	SYM
cord-316525-uadfehr6	37	10	16449	16449	CD
cord-316525-uadfehr6	37	11	,	,	,
cord-316525-uadfehr6	37	12	position	position	NN
cord-316525-uadfehr6	37	13	in	in	IN
cord-316525-uadfehr6	37	14	alignment	alignment	NN
cord-316525-uadfehr6	37	15	)	)	-RRB-
cord-316525-uadfehr6	37	16	are	be	VBP
cord-316525-uadfehr6	37	17	identified	identify	VBN
cord-316525-uadfehr6	37	18	as	as	IN
cord-316525-uadfehr6	37	19	putative	putative	JJ
cord-316525-uadfehr6	37	20	recombination	recombination	NN
cord-316525-uadfehr6	37	21	regions	region	NNS
cord-316525-uadfehr6	37	22	and	and	CC
cord-316525-uadfehr6	37	23	all	all	DT
cord-316525-uadfehr6	37	24	6	6	CD
cord-316525-uadfehr6	37	25	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	37	26	are	be	VBP
cord-316525-uadfehr6	37	27	potential	potential	JJ
cord-316525-uadfehr6	37	28	parents	parent	NNS
cord-316525-uadfehr6	37	29	with	with	IN
cord-316525-uadfehr6	37	30	SARS	SARS	NNP
cord-316525-uadfehr6	37	31	-	-	HYPH
cord-316525-uadfehr6	37	32	CoV	CoV	NNP
cord-316525-uadfehr6	37	33	as	as	IN
cord-316525-uadfehr6	37	34	potential	potential	JJ
cord-316525-uadfehr6	37	35	daughter	daughter	NN
cord-316525-uadfehr6	37	36	.	.	.
cord-316525-uadfehr6	38	1	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	38	2	detected	detect	VBD
cord-316525-uadfehr6	38	3	9	9	CD
cord-316525-uadfehr6	38	4	putative	putative	JJ
cord-316525-uadfehr6	38	5	recombination	recombination	NN
cord-316525-uadfehr6	38	6	events	event	NNS
cord-316525-uadfehr6	38	7	occurred	occur	VBD
cord-316525-uadfehr6	38	8	in	in	IN
cord-316525-uadfehr6	38	9	a	a	DT
cord-316525-uadfehr6	38	10	wide	wide	JJ
cord-316525-uadfehr6	38	11	range	range	NN
cord-316525-uadfehr6	38	12	of	of	IN
cord-316525-uadfehr6	38	13	positions	position	NNS
cord-316525-uadfehr6	38	14	5941	5941	CD
cord-316525-uadfehr6	38	15	-	-	SYM
cord-316525-uadfehr6	38	16	24997	24997	CD
cord-316525-uadfehr6	38	17	(	(	-LRB-
cord-316525-uadfehr6	38	18	in	in	IN
cord-316525-uadfehr6	38	19	alignment	alignment	NN
cord-316525-uadfehr6	38	20	)	)	-RRB-
cord-316525-uadfehr6	38	21	at	at	IN
cord-316525-uadfehr6	38	22	a	a	DT
cord-316525-uadfehr6	38	23	significant	significant	JJ
cord-316525-uadfehr6	38	24	level	level	NN
cord-316525-uadfehr6	38	25	p	p	NN
cord-316525-uadfehr6	38	26	<	<	XX
cord-316525-uadfehr6	38	27	0.05	0.05	CD
cord-316525-uadfehr6	38	28	for	for	IN
cord-316525-uadfehr6	38	29	two	two	CD
cord-316525-uadfehr6	38	30	P	p	NN
cord-316525-uadfehr6	38	31	-	-	HYPH
cord-316525-uadfehr6	38	32	values	value	NNS
cord-316525-uadfehr6	38	33	:	:	:
cord-316525-uadfehr6	38	34	simulated	simulate	VBN
cord-316525-uadfehr6	38	35	P	p	NN
cord-316525-uadfehr6	38	36	-	-	HYPH
cord-316525-uadfehr6	38	37	value	value	NN
cord-316525-uadfehr6	38	38	(	(	-LRB-
cord-316525-uadfehr6	38	39	based	base	VBN
cord-316525-uadfehr6	38	40	on	on	IN
cord-316525-uadfehr6	38	41	10,000	10,000	CD
cord-316525-uadfehr6	38	42	permutations	permutation	NNS
cord-316525-uadfehr6	38	43	)	)	-RRB-
cord-316525-uadfehr6	38	44	and	and	CC
cord-316525-uadfehr6	38	45	BLASTlike	blastlike	JJ
cord-316525-uadfehr6	38	46	BC	BC	NNP
cord-316525-uadfehr6	38	47	KA	KA	NNP
cord-316525-uadfehr6	38	48	P	p	NN
cord-316525-uadfehr6	38	49	-	-	HYPH
cord-316525-uadfehr6	38	50	value	value	NN
cord-316525-uadfehr6	38	51	(	(	-LRB-
cord-316525-uadfehr6	38	52	Table	Table	NNP
cord-316525-uadfehr6	38	53	3	3	CD
cord-316525-uadfehr6	38	54	)	)	-RRB-
cord-316525-uadfehr6	38	55	.	.	.
cord-316525-uadfehr6	39	1	All	all	DT
cord-316525-uadfehr6	39	2	6	6	CD
cord-316525-uadfehr6	39	3	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	39	4	are	be	VBP
cord-316525-uadfehr6	39	5	potential	potential	JJ
cord-316525-uadfehr6	39	6	parents	parent	NNS
cord-316525-uadfehr6	39	7	with	with	IN
cord-316525-uadfehr6	39	8	SARS	SARS	NNP
cord-316525-uadfehr6	39	9	-	-	HYPH
cord-316525-uadfehr6	39	10	CoV	CoV	NNP
cord-316525-uadfehr6	39	11	as	as	IN
cord-316525-uadfehr6	39	12	potential	potential	JJ
cord-316525-uadfehr6	39	13	daughter	daughter	NN
cord-316525-uadfehr6	39	14	.	.	.
cord-316525-uadfehr6	40	1	MAXCHI	MAXCHI	NNP
cord-316525-uadfehr6	40	2	identified	identify	VBD
cord-316525-uadfehr6	40	3	15	15	CD
cord-316525-uadfehr6	40	4	putative	putative	JJ
cord-316525-uadfehr6	40	5	recombination	recombination	NN
cord-316525-uadfehr6	40	6	events	event	NNS
cord-316525-uadfehr6	40	7	(	(	-LRB-
cord-316525-uadfehr6	40	8	Table	table	NN
cord-316525-uadfehr6	40	9	4	4	CD
cord-316525-uadfehr6	40	10	,	,	,
cord-316525-uadfehr6	40	11	possible	possible	JJ
cord-316525-uadfehr6	40	12	misidentification	misidentification	NN
cord-316525-uadfehr6	40	13	events	event	NNS
cord-316525-uadfehr6	40	14	are	be	VBP
cord-316525-uadfehr6	40	15	not	not	RB
cord-316525-uadfehr6	40	16	retained	retain	VBN
cord-316525-uadfehr6	40	17	)	)	-RRB-
cord-316525-uadfehr6	40	18	.	.	.
cord-316525-uadfehr6	41	1	Most	Most	JJS
cord-316525-uadfehr6	41	2	of	of	IN
cord-316525-uadfehr6	41	3	the	the	DT
cord-316525-uadfehr6	41	4	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	41	5	are	be	VBP
cord-316525-uadfehr6	41	6	significant	significant	JJ
cord-316525-uadfehr6	41	7	at	at	IN
cord-316525-uadfehr6	41	8	about	about	IN
cord-316525-uadfehr6	41	9	0.001	0.001	CD
cord-316525-uadfehr6	41	10	level	level	NN
cord-316525-uadfehr6	41	11	;	;	:
cord-316525-uadfehr6	41	12	the	the	DT
cord-316525-uadfehr6	41	13	position	position	NN
cord-316525-uadfehr6	41	14	located	locate	VBN
cord-316525-uadfehr6	41	15	in	in	IN
cord-316525-uadfehr6	41	16	alignment	alignment	NN
cord-316525-uadfehr6	41	17	spans	span	VBZ
cord-316525-uadfehr6	41	18	from	from	IN
cord-316525-uadfehr6	41	19	3534	3534	CD
cord-316525-uadfehr6	41	20	to	to	IN
cord-316525-uadfehr6	41	21	22840	22840	CD
cord-316525-uadfehr6	41	22	,	,	,
cord-316525-uadfehr6	41	23	but	but	CC
cord-316525-uadfehr6	41	24	some	some	DT
cord-316525-uadfehr6	41	25	beginning	beginning	NN
cord-316525-uadfehr6	41	26	or	or	CC
cord-316525-uadfehr6	41	27	ending	end	VBG
cord-316525-uadfehr6	41	28	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	41	29	are	be	VBP
cord-316525-uadfehr6	41	30	not	not	RB
cord-316525-uadfehr6	41	31	determined	determine	VBN
cord-316525-uadfehr6	41	32	.	.	.
cord-316525-uadfehr6	42	1	Similarly	similarly	RB
cord-316525-uadfehr6	42	2	,	,	,
cord-316525-uadfehr6	42	3	6	6	CD
cord-316525-uadfehr6	42	4	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	42	5	are	be	VBP
cord-316525-uadfehr6	42	6	potential	potential	JJ
cord-316525-uadfehr6	42	7	parents	parent	NNS
cord-316525-uadfehr6	42	8	with	with	IN
cord-316525-uadfehr6	42	9	SARS	SARS	NNP
cord-316525-uadfehr6	42	10	-	-	HYPH
cord-316525-uadfehr6	42	11	CoV	CoV	NNP
cord-316525-uadfehr6	42	12	as	as	IN
cord-316525-uadfehr6	42	13	potential	potential	JJ
cord-316525-uadfehr6	42	14	daughter	daughter	NN
cord-316525-uadfehr6	42	15	.	.	.
cord-316525-uadfehr6	43	1	RDP	RDP	NNP
cord-316525-uadfehr6	43	2	revealed	reveal	VBD
cord-316525-uadfehr6	43	3	that	that	IN
cord-316525-uadfehr6	43	4	6	6	CD
cord-316525-uadfehr6	43	5	putative	putative	JJ
cord-316525-uadfehr6	43	6	recombination	recombination	NN
cord-316525-uadfehr6	43	7	events	event	NNS
cord-316525-uadfehr6	43	8	occur	occur	VBP
cord-316525-uadfehr6	43	9	in	in	IN
cord-316525-uadfehr6	43	10	the	the	DT
cord-316525-uadfehr6	43	11	domain	domain	NN
cord-316525-uadfehr6	43	12	of	of	IN
cord-316525-uadfehr6	43	13	alignment	alignment	NN
cord-316525-uadfehr6	43	14	5910	5910	CD
cord-316525-uadfehr6	43	15	-	-	SYM
cord-316525-uadfehr6	43	16	13334	13334	CD
cord-316525-uadfehr6	43	17	(	(	-LRB-
cord-316525-uadfehr6	43	18	Table	table	NN
cord-316525-uadfehr6	43	19	5	5	CD
cord-316525-uadfehr6	43	20	)	)	-RRB-
cord-316525-uadfehr6	43	21	,	,	,
cord-316525-uadfehr6	43	22	with	with	IN
cord-316525-uadfehr6	43	23	the	the	DT
cord-316525-uadfehr6	43	24	uncorrected	uncorrected	JJ
cord-316525-uadfehr6	43	25	and	and	CC
cord-316525-uadfehr6	43	26	MC	MC	NNP
cord-316525-uadfehr6	43	27	corrected	correct	VBD
cord-316525-uadfehr6	43	28	pvalue	pvalue	NNS
cord-316525-uadfehr6	43	29	at	at	IN
cord-316525-uadfehr6	43	30	less	less	JJR
cord-316525-uadfehr6	43	31	than	than	IN
cord-316525-uadfehr6	43	32	0.002	0.002	CD
cord-316525-uadfehr6	43	33	and	and	CC
cord-316525-uadfehr6	43	34	0.05	0.05	CD
cord-316525-uadfehr6	43	35	respectively	respectively	RB
cord-316525-uadfehr6	43	36	.	.	.
cord-316525-uadfehr6	44	1	In	in	IN
cord-316525-uadfehr6	44	2	this	this	DT
cord-316525-uadfehr6	44	3	case	case	NN
cord-316525-uadfehr6	44	4	,	,	,
cord-316525-uadfehr6	44	5	4	4	CD
cord-316525-uadfehr6	44	6	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	44	7	(	(	-LRB-
cord-316525-uadfehr6	44	8	IBV	IBV	NNP
cord-316525-uadfehr6	44	9	,	,	,
cord-316525-uadfehr6	44	10	BCoV	BCoV	NNP
cord-316525-uadfehr6	44	11	,	,	,
cord-316525-uadfehr6	44	12	MHV	MHV	NNP
cord-316525-uadfehr6	44	13	and	and	CC
cord-316525-uadfehr6	44	14	PEDV	PEDV	NNP
cord-316525-uadfehr6	44	15	)	)	-RRB-
cord-316525-uadfehr6	44	16	are	be	VBP
cord-316525-uadfehr6	44	17	potential	potential	JJ
cord-316525-uadfehr6	44	18	parents	parent	NNS
cord-316525-uadfehr6	44	19	with	with	IN
cord-316525-uadfehr6	44	20	SARS	SARS	NNP
cord-316525-uadfehr6	44	21	-	-	HYPH
cord-316525-uadfehr6	44	22	CoV	CoV	NNP
cord-316525-uadfehr6	44	23	as	as	IN
cord-316525-uadfehr6	44	24	potential	potential	JJ
cord-316525-uadfehr6	44	25	daughter	daughter	NN
cord-316525-uadfehr6	44	26	.	.	.
cord-316525-uadfehr6	45	1	Figure	figure	NN
cord-316525-uadfehr6	45	2	1	1	CD
cord-316525-uadfehr6	45	3	shows	show	VBZ
cord-316525-uadfehr6	45	4	the	the	DT
cord-316525-uadfehr6	45	5	DSS	DSS	NNP
cord-316525-uadfehr6	45	6	profiles	profile	NNS
cord-316525-uadfehr6	45	7	of	of	IN
cord-316525-uadfehr6	45	8	putative	putative	JJ
cord-316525-uadfehr6	45	9	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	45	10	between	between	IN
cord-316525-uadfehr6	45	11	SARS	SARS	NNP
cord-316525-uadfehr6	45	12	-	-	HYPH
cord-316525-uadfehr6	45	13	CoV	CoV	NNP
cord-316525-uadfehr6	45	14	and	and	CC
cord-316525-uadfehr6	45	15	other	other	JJ
cord-316525-uadfehr6	45	16	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	46	1	(	(	-LRB-
cord-316525-uadfehr6	46	2	Dotted	dotted	JJ
cord-316525-uadfehr6	46	3	line	line	NN
cord-316525-uadfehr6	46	4	indicates	indicate	VBZ
cord-316525-uadfehr6	46	5	the	the	DT
cord-316525-uadfehr6	46	6	95	95	CD
cord-316525-uadfehr6	46	7	percentile	percentile	NN
cord-316525-uadfehr6	46	8	under	under	IN
cord-316525-uadfehr6	46	9	the	the	DT
cord-316525-uadfehr6	46	10	null	null	JJ
cord-316525-uadfehr6	46	11	hypothesis	hypothesis	NN
cord-316525-uadfehr6	46	12	of	of	IN
cord-316525-uadfehr6	46	13	no	no	DT
cord-316525-uadfehr6	46	14	recombination	recombination	NN
cord-316525-uadfehr6	46	15	)	)	-RRB-
cord-316525-uadfehr6	46	16	:	:	:
cord-316525-uadfehr6	47	1	SARS	SARS	NNP
cord-316525-uadfehr6	47	2	-	-	HYPH
cord-316525-uadfehr6	47	3	CoV	CoV	NNP
cord-316525-uadfehr6	47	4	,	,	,
cord-316525-uadfehr6	47	5	IBV	IBV	NNP
cord-316525-uadfehr6	47	6	,	,	,
cord-316525-uadfehr6	47	7	BCoV	BCoV	NNP
cord-316525-uadfehr6	47	8	and	and	CC
cord-316525-uadfehr6	47	9	MHV	MHV	NNP
cord-316525-uadfehr6	47	10	(	(	-LRB-
cord-316525-uadfehr6	47	11	Fig	Fig	NNP
cord-316525-uadfehr6	47	12	.	.	.
cord-316525-uadfehr6	47	13	1a	1a	CD
cord-316525-uadfehr6	47	14	)	)	-RRB-
cord-316525-uadfehr6	47	15	,	,	,
cord-316525-uadfehr6	47	16	SARS	SARS	NNP
cord-316525-uadfehr6	47	17	-	-	HYPH
cord-316525-uadfehr6	47	18	CoV	CoV	NNP
cord-316525-uadfehr6	47	19	,	,	,
cord-316525-uadfehr6	47	20	MHV	MHV	NNP
cord-316525-uadfehr6	47	21	,	,	,
cord-316525-uadfehr6	47	22	PEDV	PEDV	NNP
cord-316525-uadfehr6	47	23	and	and	CC
cord-316525-uadfehr6	47	24	TGEV	TGEV	NNP
cord-316525-uadfehr6	47	25	(	(	-LRB-
cord-316525-uadfehr6	47	26	Fig	fig	NN
cord-316525-uadfehr6	47	27	.	.	.
cord-316525-uadfehr6	47	28	1b	1b	CD
cord-316525-uadfehr6	47	29	)	)	-RRB-
cord-316525-uadfehr6	47	30	,	,	,
cord-316525-uadfehr6	47	31	SARS	SARS	NNP
cord-316525-uadfehr6	47	32	-	-	HYPH
cord-316525-uadfehr6	47	33	CoV	CoV	NNP
cord-316525-uadfehr6	47	34	,	,	,
cord-316525-uadfehr6	47	35	IBV	IBV	NNP
cord-316525-uadfehr6	47	36	,	,	,
cord-316525-uadfehr6	47	37	HCoV	HCoV	NNP
cord-316525-uadfehr6	47	38	and	and	CC
cord-316525-uadfehr6	47	39	TGEV	TGEV	NNP
cord-316525-uadfehr6	47	40	(	(	-LRB-
cord-316525-uadfehr6	47	41	Fig	Fig	NNP
cord-316525-uadfehr6	47	42	.	.	.
cord-316525-uadfehr6	47	43	1c	1c	CD
cord-316525-uadfehr6	47	44	)	)	-RRB-
cord-316525-uadfehr6	47	45	.	.	.
cord-316525-uadfehr6	48	1	There	there	EX
cord-316525-uadfehr6	48	2	are	be	VBP
cord-316525-uadfehr6	48	3	about	about	RB
cord-316525-uadfehr6	48	4	6	6	CD
cord-316525-uadfehr6	48	5	different	different	JJ
cord-316525-uadfehr6	48	6	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	48	7	(	(	-LRB-
cord-316525-uadfehr6	48	8	significant	significant	JJ
cord-316525-uadfehr6	48	9	peaks	peak	NNS
cord-316525-uadfehr6	48	10	)	)	-RRB-
cord-316525-uadfehr6	48	11	:	:	:
cord-316525-uadfehr6	48	12	13614	13614	CD
cord-316525-uadfehr6	48	13	and	and	CC
cord-316525-uadfehr6	48	14	16085	16085	CD
cord-316525-uadfehr6	48	15	(	(	-LRB-
cord-316525-uadfehr6	48	16	Fig	Fig	NNP
cord-316525-uadfehr6	48	17	.	.	.
cord-316525-uadfehr6	48	18	1a	1a	CD
cord-316525-uadfehr6	48	19	)	)	-RRB-
cord-316525-uadfehr6	48	20	,	,	,
cord-316525-uadfehr6	48	21	11008	11008	CD
cord-316525-uadfehr6	48	22	and	and	CC
cord-316525-uadfehr6	48	23	12850	12850	CD
cord-316525-uadfehr6	48	24	(	(	-LRB-
cord-316525-uadfehr6	48	25	Fig	Fig	NNP
cord-316525-uadfehr6	48	26	.	.	.
cord-316525-uadfehr6	48	27	1b	1b	CD
cord-316525-uadfehr6	48	28	)	)	-RRB-
cord-316525-uadfehr6	48	29	,	,	,
cord-316525-uadfehr6	48	30	12805	12805	CD
cord-316525-uadfehr6	48	31	,	,	,
cord-316525-uadfehr6	48	32	13614	13614	CD
cord-316525-uadfehr6	48	33	and	and	CC
cord-316525-uadfehr6	48	34	16444	16444	CD
cord-316525-uadfehr6	48	35	(	(	-LRB-
cord-316525-uadfehr6	48	36	Fig	Fig	NNP
cord-316525-uadfehr6	48	37	.	.	.
cord-316525-uadfehr6	48	38	1c	1c	CD
cord-316525-uadfehr6	48	39	)	)	-RRB-
cord-316525-uadfehr6	48	40	.	.	.
cord-316525-uadfehr6	49	1	HMM	HMM	NNP
cord-316525-uadfehr6	49	2	plots	plot	NNS
cord-316525-uadfehr6	49	3	for	for	IN
cord-316525-uadfehr6	49	4	SARS	SARS	NNP
cord-316525-uadfehr6	49	5	-	-	HYPH
cord-316525-uadfehr6	49	6	CoV	CoV	NNP
cord-316525-uadfehr6	49	7	,	,	,
cord-316525-uadfehr6	49	8	IBV	IBV	NNP
cord-316525-uadfehr6	49	9	,	,	,
cord-316525-uadfehr6	49	10	BCoV	BCoV	NNP
cord-316525-uadfehr6	49	11	and	and	CC
cord-316525-uadfehr6	49	12	HCoV	HCoV	NNP
cord-316525-uadfehr6	49	13	(	(	-LRB-
cord-316525-uadfehr6	49	14	Fig	fig	NN
cord-316525-uadfehr6	49	15	.	.	NNP
cord-316525-uadfehr6	49	16	2	2	LS
cord-316525-uadfehr6	49	17	)	)	-RRB-
cord-316525-uadfehr6	49	18	revealed	reveal	VBD
cord-316525-uadfehr6	49	19	that	that	IN
cord-316525-uadfehr6	49	20	the	the	DT
cord-316525-uadfehr6	49	21	putative	putative	JJ
cord-316525-uadfehr6	49	22	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	49	23	are	be	VBP
cord-316525-uadfehr6	49	24	at	at	IN
cord-316525-uadfehr6	49	25	about	about	IN
cord-316525-uadfehr6	49	26	position	position	NN
cord-316525-uadfehr6	49	27	5500	5500	CD
cord-316525-uadfehr6	49	28	and	and	CC
cord-316525-uadfehr6	49	29	19000	19000	CD
cord-316525-uadfehr6	49	30	.	.	.
cord-316525-uadfehr6	50	1	There	there	EX
cord-316525-uadfehr6	50	2	is	be	VBZ
cord-316525-uadfehr6	50	3	a	a	DT
cord-316525-uadfehr6	50	4	clear	clear	JJ
cord-316525-uadfehr6	50	5	transition	transition	NN
cord-316525-uadfehr6	50	6	from	from	IN
cord-316525-uadfehr6	50	7	state	state	NN
cord-316525-uadfehr6	50	8	1	1	CD
cord-316525-uadfehr6	51	1	(	(	-LRB-
cord-316525-uadfehr6	51	2	SARS	SARS	NNP
cord-316525-uadfehr6	51	3	-	-	HYPH
cord-316525-uadfehr6	51	4	CoV	CoV	NNP
cord-316525-uadfehr6	51	5	grouped	group	VBN
cord-316525-uadfehr6	51	6	with	with	IN
cord-316525-uadfehr6	51	7	IBV	IBV	NNP
cord-316525-uadfehr6	51	8	)	)	-RRB-
cord-316525-uadfehr6	52	1	(	(	-LRB-
cord-316525-uadfehr6	52	2	Fig	Fig	NNP
cord-316525-uadfehr6	52	3	.	.	.
cord-316525-uadfehr6	52	4	2a	2a	CD
cord-316525-uadfehr6	52	5	)	)	-RRB-
cord-316525-uadfehr6	52	6	into	into	IN
cord-316525-uadfehr6	52	7	state	state	NN
cord-316525-uadfehr6	52	8	3	3	CD
cord-316525-uadfehr6	53	1	(	(	-LRB-
cord-316525-uadfehr6	53	2	SARS	SARS	NNP
cord-316525-uadfehr6	53	3	-	-	HYPH
cord-316525-uadfehr6	53	4	CoV	CoV	NNP
cord-316525-uadfehr6	53	5	grouped	group	VBD
cord-316525-uadfehr6	53	6	with	with	IN
cord-316525-uadfehr6	53	7	HCoV	HCoV	NNP
cord-316525-uadfehr6	53	8	)	)	-RRB-
cord-316525-uadfehr6	54	1	(	(	-LRB-
cord-316525-uadfehr6	54	2	Fig	Fig	NNP
cord-316525-uadfehr6	54	3	.	.	.
cord-316525-uadfehr6	54	4	2c	2c	NNP
cord-316525-uadfehr6	54	5	)	)	-RRB-
cord-316525-uadfehr6	54	6	.	.	.
cord-316525-uadfehr6	55	1	The	the	DT
cord-316525-uadfehr6	55	2	region	region	NN
cord-316525-uadfehr6	55	3	between	between	IN
cord-316525-uadfehr6	55	4	5500	5500	CD
cord-316525-uadfehr6	55	5	and	and	CC
cord-316525-uadfehr6	55	6	19000	19000	CD
cord-316525-uadfehr6	55	7	is	be	VBZ
cord-316525-uadfehr6	55	8	noisy	noisy	JJ
cord-316525-uadfehr6	55	9	,	,	,
cord-316525-uadfehr6	55	10	and	and	CC
cord-316525-uadfehr6	55	11	at	at	IN
cord-316525-uadfehr6	55	12	this	this	DT
cord-316525-uadfehr6	55	13	moment	moment	NN
cord-316525-uadfehr6	55	14	no	no	DT
cord-316525-uadfehr6	55	15	information	information	NN
cord-316525-uadfehr6	55	16	can	can	MD
cord-316525-uadfehr6	55	17	be	be	VB
cord-316525-uadfehr6	55	18	provided	provide	VBN
cord-316525-uadfehr6	55	19	by	by	IN
cord-316525-uadfehr6	55	20	HMM	HMM	NNP
cord-316525-uadfehr6	55	21	.	.	.
cord-316525-uadfehr6	56	1	Figure	figure	NN
cord-316525-uadfehr6	56	2	3	3	CD
cord-316525-uadfehr6	56	3	shows	show	VBZ
cord-316525-uadfehr6	56	4	the	the	DT
cord-316525-uadfehr6	56	5	results	result	NNS
cord-316525-uadfehr6	56	6	of	of	IN
cord-316525-uadfehr6	56	7	PDM	PDM	NNP
cord-316525-uadfehr6	56	8	analysis	analysis	NN
cord-316525-uadfehr6	56	9	performed	perform	VBN
cord-316525-uadfehr6	56	10	on	on	IN
cord-316525-uadfehr6	56	11	SARS	SARS	NNP
cord-316525-uadfehr6	56	12	-	-	HYPH
cord-316525-uadfehr6	56	13	CoV	CoV	NNP
cord-316525-uadfehr6	56	14	and	and	CC
cord-316525-uadfehr6	56	15	other	other	JJ
cord-316525-uadfehr6	56	16	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	56	17	(	(	-LRB-
cord-316525-uadfehr6	56	18	dotted	dotted	JJ
cord-316525-uadfehr6	56	19	line	line	NN
cord-316525-uadfehr6	56	20	indicates	indicate	VBZ
cord-316525-uadfehr6	56	21	the	the	DT
cord-316525-uadfehr6	56	22	95	95	CD
cord-316525-uadfehr6	56	23	%	%	NN
cord-316525-uadfehr6	56	24	critical	critical	JJ
cord-316525-uadfehr6	56	25	region	region	NN
cord-316525-uadfehr6	56	26	for	for	IN
cord-316525-uadfehr6	56	27	the	the	DT
cord-316525-uadfehr6	56	28	null	null	NN
cord-316525-uadfehr6	57	1	(	(	-LRB-
cord-316525-uadfehr6	57	2	Fig	Fig	NNP
cord-316525-uadfehr6	57	3	.	.	.
cord-316525-uadfehr6	57	4	3c	3c	NNP
cord-316525-uadfehr6	57	5	,	,	,
cord-316525-uadfehr6	57	6	d	d	NNP
cord-316525-uadfehr6	57	7	)	)	-RRB-
cord-316525-uadfehr6	57	8	,	,	,
cord-316525-uadfehr6	57	9	1393	1393	CD
cord-316525-uadfehr6	57	10	,	,	,
cord-316525-uadfehr6	57	11	6111	6111	CD
cord-316525-uadfehr6	57	12	,	,	,
cord-316525-uadfehr6	57	13	16624	16624	CD
cord-316525-uadfehr6	57	14	,	,	,
cord-316525-uadfehr6	57	15	19859	19859	CD
cord-316525-uadfehr6	57	16	and	and	CC
cord-316525-uadfehr6	57	17	20802	20802	CD
cord-316525-uadfehr6	57	18	(	(	-LRB-
cord-316525-uadfehr6	57	19	Fig	Fig	NNP
cord-316525-uadfehr6	57	20	.	.	.
cord-316525-uadfehr6	57	21	3e	3e	NNP
cord-316525-uadfehr6	57	22	,	,	,
cord-316525-uadfehr6	57	23	f	f	NNP
cord-316525-uadfehr6	57	24	)	)	-RRB-
cord-316525-uadfehr6	57	25	.	.	.
cord-316525-uadfehr6	58	1	Posada	Posada	NNP
cord-316525-uadfehr6	58	2	[	[	-LRB-
cord-316525-uadfehr6	58	3	23	23	CD
cord-316525-uadfehr6	58	4	]	]	-RRB-
cord-316525-uadfehr6	58	5	suggested	suggest	VBD
cord-316525-uadfehr6	58	6	that	that	IN
cord-316525-uadfehr6	58	7	one	one	PRP
cord-316525-uadfehr6	58	8	should	should	MD
cord-316525-uadfehr6	58	9	not	not	RB
cord-316525-uadfehr6	58	10	rely	rely	VB
cord-316525-uadfehr6	58	11	too	too	RB
cord-316525-uadfehr6	58	12	much	much	RB
cord-316525-uadfehr6	58	13	on	on	IN
cord-316525-uadfehr6	58	14	a	a	DT
cord-316525-uadfehr6	58	15	single	single	JJ
cord-316525-uadfehr6	58	16	method	method	NN
cord-316525-uadfehr6	58	17	for	for	IN
cord-316525-uadfehr6	58	18	recombination	recombination	NN
cord-316525-uadfehr6	58	19	detection	detection	NN
cord-316525-uadfehr6	58	20	.	.	.
cord-316525-uadfehr6	59	1	Here	here	RB
cord-316525-uadfehr6	59	2	we	-PRON-	PRP
cord-316525-uadfehr6	59	3	consider	consider	VBP
cord-316525-uadfehr6	59	4	the	the	DT
cord-316525-uadfehr6	59	5	regions	region	NNS
cord-316525-uadfehr6	59	6	identified	identify	VBN
cord-316525-uadfehr6	59	7	by	by	IN
cord-316525-uadfehr6	59	8	at	at	RB
cord-316525-uadfehr6	59	9	least	least	JJS
cord-316525-uadfehr6	59	10	3	3	CD
cord-316525-uadfehr6	59	11	methods	method	NNS
cord-316525-uadfehr6	59	12	as	as	IN
cord-316525-uadfehr6	59	13	putative	putative	JJ
cord-316525-uadfehr6	59	14	recombination	recombination	NN
cord-316525-uadfehr6	59	15	regions	region	NNS
cord-316525-uadfehr6	59	16	.	.	.
cord-316525-uadfehr6	60	1	The	the	DT
cord-316525-uadfehr6	60	2	results	result	NNS
cord-316525-uadfehr6	60	3	are	be	VBP
cord-316525-uadfehr6	60	4	summarized	summarize	VBN
cord-316525-uadfehr6	60	5	in	in	IN
cord-316525-uadfehr6	60	6	Table	Table	NNP
cord-316525-uadfehr6	60	7	6	6	CD
cord-316525-uadfehr6	60	8	.	.	.
cord-316525-uadfehr6	61	1	Seven	seven	CD
cord-316525-uadfehr6	61	2	putative	putative	JJ
cord-316525-uadfehr6	61	3	recombination	recombination	NN
cord-316525-uadfehr6	61	4	regions	region	NNS
cord-316525-uadfehr6	61	5	span	span	VBP
cord-316525-uadfehr6	61	6	a	a	DT
cord-316525-uadfehr6	61	7	range	range	NN
cord-316525-uadfehr6	61	8	of	of	IN
cord-316525-uadfehr6	61	9	positions	position	NNS
cord-316525-uadfehr6	61	10	in	in	IN
cord-316525-uadfehr6	61	11	SARS	SARS	NNP
cord-316525-uadfehr6	61	12	-	-	HYPH
cord-316525-uadfehr6	61	13	CoV	CoV	NNP
cord-316525-uadfehr6	61	14	 	 	_SP
cord-316525-uadfehr6	61	15	Phylogenetic	Phylogenetic	NNP
cord-316525-uadfehr6	61	16	trees	tree	NNS
cord-316525-uadfehr6	61	17	constructed	construct	VBN
cord-316525-uadfehr6	61	18	by	by	IN
cord-316525-uadfehr6	61	19	using	use	VBG
cord-316525-uadfehr6	61	20	putative	putative	JJ
cord-316525-uadfehr6	61	21	recombination	recombination	NN
cord-316525-uadfehr6	61	22	regions	region	NNS
cord-316525-uadfehr6	61	23	and	and	CC
cord-316525-uadfehr6	61	24	nonrecombination	nonrecombination	NN
cord-316525-uadfehr6	61	25	regions	region	NNS
cord-316525-uadfehr6	61	26	identified	identify	VBN
cord-316525-uadfehr6	61	27	by	by	IN
cord-316525-uadfehr6	61	28	above	above	JJ
cord-316525-uadfehr6	61	29	techniques	technique	NNS
cord-316525-uadfehr6	61	30	are	be	VBP
cord-316525-uadfehr6	61	31	shown	show	VBN
cord-316525-uadfehr6	61	32	in	in	IN
cord-316525-uadfehr6	61	33	Figure	Figure	NNP
cord-316525-uadfehr6	61	34	4	4	CD
cord-316525-uadfehr6	61	35	.	.	.
cord-316525-uadfehr6	62	1	The	the	DT
cord-316525-uadfehr6	62	2	left	left	JJ
cord-316525-uadfehr6	62	3	panels	panel	NNS
cord-316525-uadfehr6	62	4	stand	stand	VBP
cord-316525-uadfehr6	62	5	for	for	IN
cord-316525-uadfehr6	62	6	non	non	JJ
cord-316525-uadfehr6	62	7	-	-	JJ
cord-316525-uadfehr6	62	8	recombination	recombination	JJ
cord-316525-uadfehr6	62	9	regions	region	NNS
cord-316525-uadfehr6	62	10	and	and	CC
cord-316525-uadfehr6	62	11	the	the	DT
cord-316525-uadfehr6	62	12	right	right	JJ
cord-316525-uadfehr6	62	13	panels	panel	NNS
cord-316525-uadfehr6	62	14	for	for	IN
cord-316525-uadfehr6	62	15	recombination	recombination	NN
cord-316525-uadfehr6	62	16	regions	region	NNS
cord-316525-uadfehr6	62	17	.	.	.
cord-316525-uadfehr6	63	1	We	-PRON-	PRP
cord-316525-uadfehr6	63	2	compared	compare	VBD
cord-316525-uadfehr6	63	3	each	each	DT
cord-316525-uadfehr6	63	4	row	row	NN
cord-316525-uadfehr6	63	5	of	of	IN
cord-316525-uadfehr6	63	6	figures	figure	NNS
cord-316525-uadfehr6	63	7	and	and	CC
cord-316525-uadfehr6	63	8	found	find	VBD
cord-316525-uadfehr6	63	9	that	that	IN
cord-316525-uadfehr6	63	10	the	the	DT
cord-316525-uadfehr6	63	11	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	63	12	tree	tree	NN
cord-316525-uadfehr6	63	13	in	in	IN
cord-316525-uadfehr6	63	14	the	the	DT
cord-316525-uadfehr6	63	15	left	left	JJ
cord-316525-uadfehr6	63	16	panel	panel	NN
cord-316525-uadfehr6	63	17	(	(	-LRB-
cord-316525-uadfehr6	63	18	non	non	JJ
cord-316525-uadfehr6	63	19	-	-	JJ
cord-316525-uadfehr6	63	20	recombination	recombination	JJ
cord-316525-uadfehr6	63	21	region	region	NN
cord-316525-uadfehr6	63	22	)	)	-RRB-
cord-316525-uadfehr6	63	23	had	have	VBD
cord-316525-uadfehr6	63	24	very	very	RB
cord-316525-uadfehr6	63	25	different	different	JJ
cord-316525-uadfehr6	63	26	topology	topology	NN
cord-316525-uadfehr6	63	27	when	when	WRB
cord-316525-uadfehr6	63	28	compared	compare	VBN
cord-316525-uadfehr6	63	29	to	to	IN
cord-316525-uadfehr6	63	30	the	the	DT
cord-316525-uadfehr6	63	31	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	63	32	tree	tree	NN
cord-316525-uadfehr6	63	33	in	in	IN
cord-316525-uadfehr6	63	34	the	the	DT
cord-316525-uadfehr6	63	35	right	right	JJ
cord-316525-uadfehr6	63	36	panel	panel	NN
cord-316525-uadfehr6	63	37	(	(	-LRB-
cord-316525-uadfehr6	63	38	recombination	recombination	NN
cord-316525-uadfehr6	63	39	region	region	NN
cord-316525-uadfehr6	63	40	)	)	-RRB-
cord-316525-uadfehr6	63	41	,	,	,
cord-316525-uadfehr6	63	42	which	which	WDT
cord-316525-uadfehr6	63	43	indicates	indicate	VBZ
cord-316525-uadfehr6	63	44	that	that	IN
cord-316525-uadfehr6	63	45	recombination	recombination	NN
cord-316525-uadfehr6	63	46	has	have	VBZ
cord-316525-uadfehr6	63	47	occurred	occur	VBN
cord-316525-uadfehr6	63	48	.	.	.
cord-316525-uadfehr6	64	1	For	for	IN
cord-316525-uadfehr6	64	2	example	example	NN
cord-316525-uadfehr6	64	3	,	,	,
cord-316525-uadfehr6	64	4	in	in	IN
cord-316525-uadfehr6	64	5	Fig	Fig	NNP
cord-316525-uadfehr6	64	6	.	.	NNP
cord-316525-uadfehr6	64	7	4a	4a	CD
cord-316525-uadfehr6	64	8	,	,	,
cord-316525-uadfehr6	64	9	7	7	CD
cord-316525-uadfehr6	64	10	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	64	11	are	be	VBP
cord-316525-uadfehr6	64	12	divided	divide	VBN
cord-316525-uadfehr6	64	13	into	into	IN
cord-316525-uadfehr6	64	14	4	4	CD
cord-316525-uadfehr6	64	15	groups	group	NNS
cord-316525-uadfehr6	64	16	:	:	:
cord-316525-uadfehr6	64	17	group	group	NN
cord-316525-uadfehr6	64	18	1	1	CD
cord-316525-uadfehr6	64	19	for	for	IN
cord-316525-uadfehr6	64	20	TGEV	TGEV	NNP
cord-316525-uadfehr6	64	21	,	,	,
cord-316525-uadfehr6	64	22	HCoV	HCoV	NNP
cord-316525-uadfehr6	64	23	and	and	CC
cord-316525-uadfehr6	64	24	PEDV	PEDV	NNP
cord-316525-uadfehr6	64	25	,	,	,
cord-316525-uadfehr6	64	26	group	group	NN
cord-316525-uadfehr6	64	27	2	2	CD
cord-316525-uadfehr6	64	28	for	for	IN
cord-316525-uadfehr6	64	29	BCoV	BCoV	NNP
cord-316525-uadfehr6	64	30	and	and	CC
cord-316525-uadfehr6	64	31	MHV	MHV	NNP
cord-316525-uadfehr6	64	32	,	,	,
cord-316525-uadfehr6	64	33	group	group	NN
cord-316525-uadfehr6	64	34	3	3	CD
cord-316525-uadfehr6	64	35	for	for	IN
cord-316525-uadfehr6	64	36	IBV	IBV	NNP
cord-316525-uadfehr6	64	37	,	,	,
cord-316525-uadfehr6	64	38	and	and	CC
cord-316525-uadfehr6	64	39	group	group	NN
cord-316525-uadfehr6	64	40	4	4	CD
cord-316525-uadfehr6	64	41	for	for	IN
cord-316525-uadfehr6	64	42	SARS	SARS	NNP
cord-316525-uadfehr6	64	43	-	-	HYPH
cord-316525-uadfehr6	64	44	CoV	CoV	NNP
cord-316525-uadfehr6	64	45	,	,	,
cord-316525-uadfehr6	64	46	consistent	consistent	JJ
cord-316525-uadfehr6	64	47	with	with	IN
cord-316525-uadfehr6	64	48	Marra	Marra	NNP
cord-316525-uadfehr6	64	49	et	et	NNP
cord-316525-uadfehr6	64	50	al	al	NNP
cord-316525-uadfehr6	64	51	.	.	.
cord-316525-uadfehr6	65	1	[	[	-LRB-
cord-316525-uadfehr6	65	2	17	17	CD
cord-316525-uadfehr6	65	3	]	]	-RRB-
cord-316525-uadfehr6	65	4	;	;	:
cord-316525-uadfehr6	65	5	while	while	IN
cord-316525-uadfehr6	65	6	in	in	IN
cord-316525-uadfehr6	65	7	Fig	Fig	NNP
cord-316525-uadfehr6	65	8	.	.	.
cord-316525-uadfehr6	65	9	4b	4b	CD
cord-316525-uadfehr6	65	10	,	,	,
cord-316525-uadfehr6	65	11	7	7	CD
cord-316525-uadfehr6	65	12	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	65	13	are	be	VBP
cord-316525-uadfehr6	65	14	divided	divide	VBN
cord-316525-uadfehr6	65	15	and	and	CC
cord-316525-uadfehr6	65	16	SARS	SARS	NNP
cord-316525-uadfehr6	65	17	-	-	HYPH
cord-316525-uadfehr6	65	18	CoV	CoV	NNP
cord-316525-uadfehr6	65	19	,	,	,
cord-316525-uadfehr6	65	20	suggests	suggest	VBZ
cord-316525-uadfehr6	65	21	that	that	IN
cord-316525-uadfehr6	65	22	SARS	SARS	NNP
cord-316525-uadfehr6	65	23	-	-	HYPH
cord-316525-uadfehr6	65	24	CoV	CoV	NNP
cord-316525-uadfehr6	65	25	is	be	VBZ
cord-316525-uadfehr6	65	26	most	most	RBS
cord-316525-uadfehr6	65	27	closely	closely	RB
cord-316525-uadfehr6	65	28	related	related	JJ
cord-316525-uadfehr6	65	29	to	to	IN
cord-316525-uadfehr6	65	30	BCoV	BCoV	NNP
cord-316525-uadfehr6	65	31	and	and	CC
cord-316525-uadfehr6	65	32	MHV	MHV	NNP
cord-316525-uadfehr6	65	33	,	,	,
cord-316525-uadfehr6	65	34	which	which	WDT
cord-316525-uadfehr6	65	35	is	be	VBZ
cord-316525-uadfehr6	65	36	consistent	consistent	JJ
cord-316525-uadfehr6	65	37	with	with	IN
cord-316525-uadfehr6	65	38	a	a	DT
cord-316525-uadfehr6	65	39	recent	recent	JJ
cord-316525-uadfehr6	65	40	report	report	NN
cord-316525-uadfehr6	65	41	[	[	-LRB-
cord-316525-uadfehr6	65	42	29	29	CD
cord-316525-uadfehr6	65	43	]	]	-RRB-
cord-316525-uadfehr6	65	44	.	.	.
cord-316525-uadfehr6	66	1	At	at	IN
cord-316525-uadfehr6	66	2	the	the	DT
cord-316525-uadfehr6	66	3	same	same	JJ
cord-316525-uadfehr6	66	4	time	time	NN
cord-316525-uadfehr6	66	5	,	,	,
cord-316525-uadfehr6	66	6	SARS	SARS	NNP
cord-316525-uadfehr6	66	7	-	-	HYPH
cord-316525-uadfehr6	66	8	CoV	CoV	NNP
cord-316525-uadfehr6	66	9	is	be	VBZ
cord-316525-uadfehr6	66	10	also	also	RB
cord-316525-uadfehr6	66	11	most	most	RBS
cord-316525-uadfehr6	66	12	closely	closely	RB
cord-316525-uadfehr6	66	13	related	relate	VBN
cord-316525-uadfehr6	66	14	to	to	IN
cord-316525-uadfehr6	66	15	TGEV	TGEV	NNP
cord-316525-uadfehr6	66	16	(	(	-LRB-
cord-316525-uadfehr6	66	17	Fig	Fig	NNP
cord-316525-uadfehr6	66	18	.	.	.
cord-316525-uadfehr6	66	19	4d	4d	CD
cord-316525-uadfehr6	66	20	)	)	-RRB-
cord-316525-uadfehr6	66	21	and	and	CC
cord-316525-uadfehr6	66	22	IBV	IBV	NNP
cord-316525-uadfehr6	66	23	(	(	-LRB-
cord-316525-uadfehr6	66	24	Fig	Fig	NNP
cord-316525-uadfehr6	66	25	.	.	.
cord-316525-uadfehr6	66	26	4f	4f	CD
cord-316525-uadfehr6	66	27	)	)	-RRB-
cord-316525-uadfehr6	66	28	.	.	.
cord-316525-uadfehr6	67	1	Thus	thus	RB
cord-316525-uadfehr6	67	2	,	,	,
cord-316525-uadfehr6	67	3	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	67	4	analysis	analysis	NN
cord-316525-uadfehr6	67	5	substantiates	substantiate	VBZ
cord-316525-uadfehr6	67	6	the	the	DT
cord-316525-uadfehr6	67	7	presence	presence	NN
cord-316525-uadfehr6	67	8	of	of	IN
cord-316525-uadfehr6	67	9	recombination	recombination	NN
cord-316525-uadfehr6	67	10	events	event	NNS
cord-316525-uadfehr6	67	11	in	in	IN
cord-316525-uadfehr6	67	12	the	the	DT
cord-316525-uadfehr6	67	13	history	history	NN
cord-316525-uadfehr6	67	14	that	that	WDT
cord-316525-uadfehr6	67	15	led	lead	VBD
cord-316525-uadfehr6	67	16	to	to	IN
cord-316525-uadfehr6	67	17	the	the	DT
cord-316525-uadfehr6	67	18	SARS	SARS	NNP
cord-316525-uadfehr6	67	19	-	-	HYPH
cord-316525-uadfehr6	67	20	CoV	CoV	NNP
cord-316525-uadfehr6	67	21	genome	genome	NN
cord-316525-uadfehr6	67	22	.	.	.
cord-316525-uadfehr6	68	1	In	in	IN
cord-316525-uadfehr6	68	2	this	this	DT
cord-316525-uadfehr6	68	3	study	study	NN
cord-316525-uadfehr6	68	4	,	,	,
cord-316525-uadfehr6	68	5	seven	seven	CD
cord-316525-uadfehr6	68	6	recombination	recombination	NN
cord-316525-uadfehr6	68	7	detection	detection	NN
cord-316525-uadfehr6	68	8	methods	method	NNS
cord-316525-uadfehr6	68	9	and	and	CC
cord-316525-uadfehr6	68	10	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	68	11	analyses	analysis	NNS
cord-316525-uadfehr6	68	12	were	be	VBD
cord-316525-uadfehr6	68	13	performed	perform	VBN
cord-316525-uadfehr6	68	14	on	on	IN
cord-316525-uadfehr6	68	15	SARS	SARS	NNP
cord-316525-uadfehr6	68	16	-	-	HYPH
cord-316525-uadfehr6	68	17	CoV	CoV	NNP
cord-316525-uadfehr6	68	18	and	and	CC
cord-316525-uadfehr6	68	19	the	the	DT
cord-316525-uadfehr6	68	20	six	six	CD
cord-316525-uadfehr6	68	21	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	68	22	identified	identify	VBN
cord-316525-uadfehr6	68	23	by	by	IN
cord-316525-uadfehr6	68	24	BLAST	blast	NN
cord-316525-uadfehr6	68	25	(	(	-LRB-
cord-316525-uadfehr6	68	26	IBV	IBV	NNP
cord-316525-uadfehr6	68	27	,	,	,
cord-316525-uadfehr6	68	28	BCoV	BCoV	NNP
cord-316525-uadfehr6	68	29	,	,	,
cord-316525-uadfehr6	68	30	HCoV	HCoV	NNP
cord-316525-uadfehr6	68	31	,	,	,
cord-316525-uadfehr6	68	32	MHV	MHV	NNP
cord-316525-uadfehr6	68	33	,	,	,
cord-316525-uadfehr6	68	34	PEDV	PEDV	NNP
cord-316525-uadfehr6	68	35	and	and	CC
cord-316525-uadfehr6	68	36	TGEV	TGEV	NNP
cord-316525-uadfehr6	68	37	)	)	-RRB-
cord-316525-uadfehr6	68	38	.	.	.
cord-316525-uadfehr6	69	1	These	these	DT
cord-316525-uadfehr6	69	2	techniques	technique	NNS
cord-316525-uadfehr6	69	3	successfully	successfully	RB
cord-316525-uadfehr6	69	4	identified	identify	VBD
cord-316525-uadfehr6	69	5	recombination	recombination	NN
cord-316525-uadfehr6	69	6	events	event	NNS
cord-316525-uadfehr6	69	7	in	in	IN
cord-316525-uadfehr6	69	8	bacteria	bacteria	NNS
cord-316525-uadfehr6	69	9	and	and	CC
cord-316525-uadfehr6	69	10	viruses	virus	NNS
cord-316525-uadfehr6	69	11	[	[	-LRB-
cord-316525-uadfehr6	69	12	2	2	CD
cord-316525-uadfehr6	69	13	,	,	,
cord-316525-uadfehr6	69	14	3	3	CD
cord-316525-uadfehr6	69	15	,	,	,
cord-316525-uadfehr6	69	16	6	6	CD
cord-316525-uadfehr6	69	17	,	,	,
cord-316525-uadfehr6	69	18	21	21	CD
cord-316525-uadfehr6	69	19	,	,	,
cord-316525-uadfehr6	69	20	26	26	CD
cord-316525-uadfehr6	69	21	,	,	,
cord-316525-uadfehr6	69	22	39	39	CD
cord-316525-uadfehr6	69	23	]	]	-RRB-
cord-316525-uadfehr6	69	24	.	.	.
cord-316525-uadfehr6	70	1	Our	-PRON-	PRP$
cord-316525-uadfehr6	70	2	analysis	analysis	NN
cord-316525-uadfehr6	70	3	concurred	concur	VBD
cord-316525-uadfehr6	70	4	to	to	TO
cord-316525-uadfehr6	70	5	suggest	suggest	VB
cord-316525-uadfehr6	70	6	the	the	DT
cord-316525-uadfehr6	70	7	occurrence	occurrence	NN
cord-316525-uadfehr6	70	8	of	of	IN
cord-316525-uadfehr6	70	9	recombination	recombination	NN
cord-316525-uadfehr6	70	10	events	event	NNS
cord-316525-uadfehr6	70	11	between	between	IN
cord-316525-uadfehr6	70	12	ancestors	ancestor	NNS
cord-316525-uadfehr6	70	13	of	of	IN
cord-316525-uadfehr6	70	14	SARS	SARS	NNP
cord-316525-uadfehr6	70	15	-	-	HYPH
cord-316525-uadfehr6	70	16	CoV	CoV	NNP
cord-316525-uadfehr6	70	17	and	and	CC
cord-316525-uadfehr6	70	18	these	these	DT
cord-316525-uadfehr6	70	19	6	6	CD
cord-316525-uadfehr6	70	20	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	70	21	.	.	.
cord-316525-uadfehr6	71	1	Indeed	indeed	RB
cord-316525-uadfehr6	71	2	,	,	,
cord-316525-uadfehr6	71	3	pairwise	pairwise	JJ
cord-316525-uadfehr6	71	4	alignment	alignment	NN
cord-316525-uadfehr6	71	5	showed	show	VBD
cord-316525-uadfehr6	71	6	that	that	IN
cord-316525-uadfehr6	71	7	many	many	JJ
cord-316525-uadfehr6	71	8	segments	segment	NNS
cord-316525-uadfehr6	71	9	of	of	IN
cord-316525-uadfehr6	71	10	high	high	JJ
cord-316525-uadfehr6	71	11	homology	homology	NN
cord-316525-uadfehr6	71	12	with	with	IN
cord-316525-uadfehr6	71	13	IBV	IBV	NNP
cord-316525-uadfehr6	71	14	,	,	,
cord-316525-uadfehr6	71	15	BCoV	BCoV	NNP
cord-316525-uadfehr6	71	16	,	,	,
cord-316525-uadfehr6	71	17	HCoV	HCoV	NNP
cord-316525-uadfehr6	71	18	,	,	,
cord-316525-uadfehr6	71	19	MHV	MHV	NNP
cord-316525-uadfehr6	71	20	,	,	,
cord-316525-uadfehr6	71	21	PEDV	PEDV	NNP
cord-316525-uadfehr6	71	22	and	and	CC
cord-316525-uadfehr6	71	23	TGEV	TGEV	NNP
cord-316525-uadfehr6	71	24	do	do	VBP
cord-316525-uadfehr6	71	25	exist	exist	VB
cord-316525-uadfehr6	71	26	in	in	IN
cord-316525-uadfehr6	71	27	SARS	SARS	NNP
cord-316525-uadfehr6	71	28	-	-	HYPH
cord-316525-uadfehr6	71	29	CoV	CoV	NNP
cord-316525-uadfehr6	71	30	genome	genome	NN
cord-316525-uadfehr6	71	31	,	,	,
cord-316525-uadfehr6	71	32	Table	Table	NNP
cord-316525-uadfehr6	71	33	7	7	CD
cord-316525-uadfehr6	71	34	exhibits	exhibit	VBZ
cord-316525-uadfehr6	71	35	the	the	DT
cord-316525-uadfehr6	71	36	segments	segment	NNS
cord-316525-uadfehr6	71	37	with	with	IN
cord-316525-uadfehr6	71	38	length	length	NN
cord-316525-uadfehr6	71	39	>	>	XX
cord-316525-uadfehr6	72	1	20	20	CD
cord-316525-uadfehr6	72	2	nt	nt	RB
cord-316525-uadfehr6	72	3	and	and	CC
cord-316525-uadfehr6	72	4	identiy	identiy	FW
cord-316525-uadfehr6	72	5	>	>	XX
cord-316525-uadfehr6	72	6	80	80	CD
cord-316525-uadfehr6	72	7	%	%	NN
cord-316525-uadfehr6	72	8	,	,	,
cord-316525-uadfehr6	72	9	and	and	CC
cord-316525-uadfehr6	72	10	Fig	Fig	NNP
cord-316525-uadfehr6	72	11	.	.	.
cord-316525-uadfehr6	73	1	5	5	CD
cord-316525-uadfehr6	73	2	shows	show	VBZ
cord-316525-uadfehr6	73	3	the	the	DT
cord-316525-uadfehr6	73	4	mosaic	mosaic	JJ
cord-316525-uadfehr6	73	5	structure	structure	NN
cord-316525-uadfehr6	73	6	of	of	IN
cord-316525-uadfehr6	73	7	the	the	DT
cord-316525-uadfehr6	73	8	region	region	NN
cord-316525-uadfehr6	73	9	14930	14930	CD
cord-316525-uadfehr6	73	10	-	-	SYM
cord-316525-uadfehr6	73	11	15908	15908	CD
cord-316525-uadfehr6	73	12	in	in	IN
cord-316525-uadfehr6	73	13	SARS	SARS	NNP
cord-316525-uadfehr6	73	14	-	-	HYPH
cord-316525-uadfehr6	73	15	CoV	CoV	NNP
cord-316525-uadfehr6	73	16	genome	genome	NN
cord-316525-uadfehr6	73	17	based	base	VBN
cord-316525-uadfehr6	73	18	on	on	IN
cord-316525-uadfehr6	73	19	the	the	DT
cord-316525-uadfehr6	73	20	segments	segment	NNS
cord-316525-uadfehr6	73	21	with	with	IN
cord-316525-uadfehr6	73	22	length	length	NN
cord-316525-uadfehr6	74	1	>	>	XX
cord-316525-uadfehr6	75	1	50	50	CD
cord-316525-uadfehr6	75	2	and	and	CC
cord-316525-uadfehr6	75	3	identity	identity	NN
cord-316525-uadfehr6	75	4	>	>	XX
cord-316525-uadfehr6	75	5	80	80	CD
cord-316525-uadfehr6	75	6	%	%	NN
cord-316525-uadfehr6	75	7	.	.	.
cord-316525-uadfehr6	76	1	Of	of	RB
cord-316525-uadfehr6	76	2	course	course	RB
cord-316525-uadfehr6	76	3	,	,	,
cord-316525-uadfehr6	76	4	the	the	DT
cord-316525-uadfehr6	76	5	other	other	JJ
cord-316525-uadfehr6	76	6	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	76	7	used	use	VBN
cord-316525-uadfehr6	76	8	in	in	IN
cord-316525-uadfehr6	76	9	the	the	DT
cord-316525-uadfehr6	76	10	analysis	analysis	NN
cord-316525-uadfehr6	76	11	are	be	VBP
cord-316525-uadfehr6	76	12	also	also	RB
cord-316525-uadfehr6	76	13	mosaic	mosaic	JJ
cord-316525-uadfehr6	76	14	structures	structure	NNS
cord-316525-uadfehr6	76	15	,	,	,
cord-316525-uadfehr6	76	16	for	for	IN
cord-316525-uadfehr6	76	17	more	more	JJR
cord-316525-uadfehr6	76	18	sequence	sequence	NN
cord-316525-uadfehr6	76	19	similarities	similarity	NNS
cord-316525-uadfehr6	76	20	exist	exist	VBP
cord-316525-uadfehr6	76	21	among	among	IN
cord-316525-uadfehr6	76	22	them	-PRON-	PRP
cord-316525-uadfehr6	76	23	than	than	IN
cord-316525-uadfehr6	76	24	with	with	IN
cord-316525-uadfehr6	76	25	SARS	SARS	NNP
cord-316525-uadfehr6	76	26	-	-	HYPH
cord-316525-uadfehr6	76	27	CoV.	CoV.	NNP
cord-316525-uadfehr6	77	1	It	-PRON-	PRP
cord-316525-uadfehr6	77	2	is	be	VBZ
cord-316525-uadfehr6	77	3	noted	note	VBN
cord-316525-uadfehr6	77	4	that	that	IN
cord-316525-uadfehr6	77	5	all	all	PDT
cord-316525-uadfehr6	77	6	the	the	DT
cord-316525-uadfehr6	77	7	sequence	sequence	NN
cord-316525-uadfehr6	77	8	comparisons	comparison	NNS
cord-316525-uadfehr6	77	9	in	in	IN
cord-316525-uadfehr6	77	10	this	this	DT
cord-316525-uadfehr6	77	11	study	study	NN
cord-316525-uadfehr6	77	12	are	be	VBP
cord-316525-uadfehr6	77	13	based	base	VBN
cord-316525-uadfehr6	77	14	on	on	IN
cord-316525-uadfehr6	77	15	nucleotide	nucleotide	JJ
cord-316525-uadfehr6	77	16	sequences	sequence	NNS
cord-316525-uadfehr6	77	17	.	.	.
cord-316525-uadfehr6	78	1	While	while	IN
cord-316525-uadfehr6	78	2	the	the	DT
cord-316525-uadfehr6	78	3	protein	protein	NN
cord-316525-uadfehr6	78	4	sequences	sequence	NNS
cord-316525-uadfehr6	78	5	in	in	IN
cord-316525-uadfehr6	78	6	SARS	SARS	NNP
cord-316525-uadfehr6	78	7	-	-	HYPH
cord-316525-uadfehr6	78	8	CoV	CoV	NNP
cord-316525-uadfehr6	78	9	are	be	VBP
cord-316525-uadfehr6	78	10	largely	largely	RB
cord-316525-uadfehr6	78	11	different	different	JJ
cord-316525-uadfehr6	78	12	from	from	IN
cord-316525-uadfehr6	78	13	those	those	DT
cord-316525-uadfehr6	78	14	in	in	IN
cord-316525-uadfehr6	78	15	the	the	DT
cord-316525-uadfehr6	78	16	known	know	VBN
cord-316525-uadfehr6	78	17	three	three	CD
cord-316525-uadfehr6	78	18	groups	group	NNS
cord-316525-uadfehr6	78	19	of	of	IN
cord-316525-uadfehr6	78	20	coronavirus	coronavirus	NN
cord-316525-uadfehr6	78	21	[	[	-LRB-
cord-316525-uadfehr6	78	22	17	17	CD
cord-316525-uadfehr6	78	23	]	]	-RRB-
cord-316525-uadfehr6	78	24	,	,	,
cord-316525-uadfehr6	78	25	such	such	JJ
cord-316525-uadfehr6	78	26	as	as	IN
cord-316525-uadfehr6	78	27	,	,	,
cord-316525-uadfehr6	78	28	for	for	IN
cord-316525-uadfehr6	78	29	S	s	NN
cord-316525-uadfehr6	78	30	protein	protein	NN
cord-316525-uadfehr6	78	31	,	,	,
cord-316525-uadfehr6	78	32	the	the	DT
cord-316525-uadfehr6	78	33	identity	identity	NN
cord-316525-uadfehr6	78	34	is	be	VBZ
cord-316525-uadfehr6	78	35	:	:	:
cord-316525-uadfehr6	78	36	25.9	25.9	CD
cord-316525-uadfehr6	78	37	%	%	NN
cord-316525-uadfehr6	78	38	for	for	IN
cord-316525-uadfehr6	78	39	SARS	SARS	NNP
cord-316525-uadfehr6	78	40	-	-	HYPH
cord-316525-uadfehr6	78	41	CoV	CoV	NNP
cord-316525-uadfehr6	78	42	and	and	CC
cord-316525-uadfehr6	78	43	BCoV	BCoV	NNP
cord-316525-uadfehr6	78	44	,	,	,
cord-316525-uadfehr6	78	45	21.7	21.7	CD
cord-316525-uadfehr6	78	46	%	%	NN
cord-316525-uadfehr6	78	47	for	for	IN
cord-316525-uadfehr6	78	48	SARS	SARS	NNP
cord-316525-uadfehr6	78	49	-	-	HYPH
cord-316525-uadfehr6	78	50	CoV	CoV	NNP
cord-316525-uadfehr6	78	51	and	and	CC
cord-316525-uadfehr6	78	52	HCoV	HCoV	NNP
cord-316525-uadfehr6	78	53	,	,	,
cord-316525-uadfehr6	78	54	21.5	21.5	CD
cord-316525-uadfehr6	78	55	%	%	NN
cord-316525-uadfehr6	78	56	for	for	IN
cord-316525-uadfehr6	78	57	SARS	SARS	NNP
cord-316525-uadfehr6	78	58	-	-	HYPH
cord-316525-uadfehr6	78	59	CoV	CoV	NNP
cord-316525-uadfehr6	78	60	and	and	CC
cord-316525-uadfehr6	78	61	IBV	IBV	NNP
cord-316525-uadfehr6	78	62	,	,	,
cord-316525-uadfehr6	78	63	25.6	25.6	CD
cord-316525-uadfehr6	78	64	%	%	NN
cord-316525-uadfehr6	78	65	for	for	IN
cord-316525-uadfehr6	78	66	SARS	SARS	NNP
cord-316525-uadfehr6	78	67	-	-	HYPH
cord-316525-uadfehr6	78	68	CoV	CoV	NNP
cord-316525-uadfehr6	78	69	and	and	CC
cord-316525-uadfehr6	78	70	MHV	MHV	NNP
cord-316525-uadfehr6	78	71	,	,	,
cord-316525-uadfehr6	78	72	20.6	20.6	CD
cord-316525-uadfehr6	78	73	%	%	NN
cord-316525-uadfehr6	78	74	for	for	IN
cord-316525-uadfehr6	78	75	SARS	SARS	NNP
cord-316525-uadfehr6	78	76	-	-	HYPH
cord-316525-uadfehr6	78	77	CoV	CoV	NNP
cord-316525-uadfehr6	78	78	and	and	CC
cord-316525-uadfehr6	78	79	PEDV	PEDV	NNP
cord-316525-uadfehr6	78	80	,	,	,
cord-316525-uadfehr6	78	81	19.4	19.4	CD
cord-316525-uadfehr6	78	82	%	%	NN
cord-316525-uadfehr6	78	83	for	for	IN
cord-316525-uadfehr6	78	84	SARS	SARS	NNP
cord-316525-uadfehr6	78	85	-	-	HYPH
cord-316525-uadfehr6	78	86	CoV	CoV	NNP
cord-316525-uadfehr6	78	87	and	and	CC
cord-316525-uadfehr6	78	88	TGEV	TGEV	NNP
cord-316525-uadfehr6	78	89	.	.	.
cord-316525-uadfehr6	79	1	Although	although	IN
cord-316525-uadfehr6	79	2	SARS	SARS	NNP
cord-316525-uadfehr6	79	3	-	-	HYPH
cord-316525-uadfehr6	79	4	CoV	CoV	NNP
cord-316525-uadfehr6	79	5	is	be	VBZ
cord-316525-uadfehr6	79	6	close	close	JJ
cord-316525-uadfehr6	79	7	to	to	IN
cord-316525-uadfehr6	79	8	BCoV	BCoV	NNP
cord-316525-uadfehr6	79	9	,	,	,
cord-316525-uadfehr6	79	10	MHV	MHV	NNP
cord-316525-uadfehr6	79	11	,	,	,
cord-316525-uadfehr6	79	12	TGEV	TGEV	NNP
cord-316525-uadfehr6	79	13	and	and	CC
cord-316525-uadfehr6	79	14	IBV	IBV	NNP
cord-316525-uadfehr6	79	15	,	,	,
cord-316525-uadfehr6	79	16	the	the	DT
cord-316525-uadfehr6	79	17	corresponding	correspond	VBG
cord-316525-uadfehr6	79	18	protein	protein	NN
cord-316525-uadfehr6	79	19	,	,	,
cord-316525-uadfehr6	79	20	replicase	replicase	NNP
cord-316525-uadfehr6	79	21	1a	1a	NNP
cord-316525-uadfehr6	79	22	,	,	,
cord-316525-uadfehr6	79	23	is	be	VBZ
cord-316525-uadfehr6	79	24	still	still	RB
cord-316525-uadfehr6	79	25	different	different	JJ
cord-316525-uadfehr6	79	26	:	:	:
cord-316525-uadfehr6	79	27	with	with	IN
cord-316525-uadfehr6	79	28	identity	identity	NN
cord-316525-uadfehr6	79	29	27.4	27.4	CD
cord-316525-uadfehr6	79	30	%	%	NN
cord-316525-uadfehr6	79	31	for	for	IN
cord-316525-uadfehr6	79	32	SARS	SARS	NNP
cord-316525-uadfehr6	79	33	-	-	HYPH
cord-316525-uadfehr6	79	34	CoV	CoV	NNP
cord-316525-uadfehr6	79	35	and	and	CC
cord-316525-uadfehr6	79	36	BCoV	BCoV	NNP
cord-316525-uadfehr6	79	37	,	,	,
cord-316525-uadfehr6	79	38	24.8	24.8	CD
cord-316525-uadfehr6	79	39	%	%	NN
cord-316525-uadfehr6	79	40	for	for	IN
cord-316525-uadfehr6	79	41	SARS	SARS	NNP
cord-316525-uadfehr6	79	42	-	-	HYPH
cord-316525-uadfehr6	79	43	CoV	CoV	NNP
cord-316525-uadfehr6	79	44	and	and	CC
cord-316525-uadfehr6	79	45	IBV	IBV	NNP
cord-316525-uadfehr6	79	46	,	,	,
cord-316525-uadfehr6	79	47	32.2	32.2	CD
cord-316525-uadfehr6	79	48	%	%	NN
cord-316525-uadfehr6	79	49	for	for	IN
cord-316525-uadfehr6	79	50	SARS	SARS	NNP
cord-316525-uadfehr6	79	51	-	-	HYPH
cord-316525-uadfehr6	79	52	CoV	CoV	NNP
cord-316525-uadfehr6	79	53	and	and	CC
cord-316525-uadfehr6	79	54	MHV	MHV	NNP
cord-316525-uadfehr6	79	55	,	,	,
cord-316525-uadfehr6	79	56	25.0	25.0	CD
cord-316525-uadfehr6	79	57	%	%	NN
cord-316525-uadfehr6	79	58	for	for	IN
cord-316525-uadfehr6	79	59	SARS	SARS	NNP
cord-316525-uadfehr6	79	60	-	-	HYPH
cord-316525-uadfehr6	79	61	CoV	CoV	NNP
cord-316525-uadfehr6	79	62	and	and	CC
cord-316525-uadfehr6	79	63	TGEV	TGEV	NNP
cord-316525-uadfehr6	79	64	.	.	.
cord-316525-uadfehr6	80	1	Naturally	naturally	RB
cord-316525-uadfehr6	80	2	,	,	,
cord-316525-uadfehr6	80	3	we	-PRON-	PRP
cord-316525-uadfehr6	80	4	should	should	MD
cord-316525-uadfehr6	80	5	take	take	VB
cord-316525-uadfehr6	80	6	into	into	IN
cord-316525-uadfehr6	80	7	account	account	NN
cord-316525-uadfehr6	80	8	the	the	DT
cord-316525-uadfehr6	80	9	role	role	NN
cord-316525-uadfehr6	80	10	of	of	IN
cord-316525-uadfehr6	80	11	convergent	convergent	JJ
cord-316525-uadfehr6	80	12	evolution	evolution	NN
cord-316525-uadfehr6	80	13	,	,	,
cord-316525-uadfehr6	80	14	which	which	WDT
cord-316525-uadfehr6	80	15	would	would	MD
cord-316525-uadfehr6	80	16	bear	bear	VB
cord-316525-uadfehr6	80	17	its	-PRON-	PRP$
cord-316525-uadfehr6	80	18	mark	mark	NN
cord-316525-uadfehr6	80	19	on	on	IN
cord-316525-uadfehr6	80	20	the	the	DT
cord-316525-uadfehr6	80	21	viral	viral	JJ
cord-316525-uadfehr6	80	22	genome	genome	NN
cord-316525-uadfehr6	80	23	.	.	.
cord-316525-uadfehr6	81	1	The	the	DT
cord-316525-uadfehr6	81	2	recombination	recombination	NN
cord-316525-uadfehr6	81	3	events	event	NNS
cord-316525-uadfehr6	81	4	that	that	WDT
cord-316525-uadfehr6	81	5	we	-PRON-	PRP
cord-316525-uadfehr6	81	6	witnessed	witness	VBD
cord-316525-uadfehr6	81	7	in	in	IN
cord-316525-uadfehr6	81	8	SARS	SARS	NNP
cord-316525-uadfehr6	81	9	-	-	HYPH
cord-316525-uadfehr6	81	10	CoV	CoV	NNP
cord-316525-uadfehr6	81	11	are	be	VBP
cord-316525-uadfehr6	81	12	present	present	JJ
cord-316525-uadfehr6	81	13	in	in	IN
cord-316525-uadfehr6	81	14	six	six	CD
cord-316525-uadfehr6	81	15	different	different	JJ
cord-316525-uadfehr6	81	16	viruses	virus	NNS
cord-316525-uadfehr6	81	17	,	,	,
cord-316525-uadfehr6	81	18	suggesting	suggest	VBG
cord-316525-uadfehr6	81	19	sequential	sequential	JJ
cord-316525-uadfehr6	81	20	horizontal	horizontal	JJ
cord-316525-uadfehr6	81	21	transfers	transfer	NNS
cord-316525-uadfehr6	81	22	and	and	CC
cord-316525-uadfehr6	81	23	progressive	progressive	JJ
cord-316525-uadfehr6	81	24	adaptation	adaptation	NN
cord-316525-uadfehr6	81	25	to	to	IN
cord-316525-uadfehr6	81	26	new	new	JJ
cord-316525-uadfehr6	81	27	hosts	host	NNS
cord-316525-uadfehr6	81	28	cells	cell	NNS
cord-316525-uadfehr6	81	29	or	or	CC
cord-316525-uadfehr6	81	30	animals	animal	NNS
cord-316525-uadfehr6	81	31	.	.	.
cord-316525-uadfehr6	82	1	Indeed	indeed	RB
cord-316525-uadfehr6	82	2	because	because	IN
cord-316525-uadfehr6	82	3	viruses	virus	NNS
cord-316525-uadfehr6	82	4	need	need	VBP
cord-316525-uadfehr6	82	5	both	both	DT
cord-316525-uadfehr6	82	6	receptors	receptor	NNS
cord-316525-uadfehr6	82	7	to	to	TO
cord-316525-uadfehr6	82	8	permeate	permeate	VB
cord-316525-uadfehr6	82	9	host	host	NN
cord-316525-uadfehr6	82	10	cells	cell	NNS
cord-316525-uadfehr6	82	11	and	and	CC
cord-316525-uadfehr6	82	12	resist	resist	VB
cord-316525-uadfehr6	82	13	the	the	DT
cord-316525-uadfehr6	82	14	immune	immune	JJ
cord-316525-uadfehr6	82	15	response	response	NN
cord-316525-uadfehr6	82	16	of	of	IN
cord-316525-uadfehr6	82	17	the	the	DT
cord-316525-uadfehr6	82	18	host	host	NN
cord-316525-uadfehr6	82	19	,	,	,
cord-316525-uadfehr6	82	20	their	-PRON-	PRP$
cord-316525-uadfehr6	82	21	outer	outer	JJ
cord-316525-uadfehr6	82	22	layer	layer	NN
cord-316525-uadfehr6	82	23	proteins	protein	NNS
cord-316525-uadfehr6	82	24	are	be	VBP
cord-316525-uadfehr6	82	25	submitted	submit	VBN
cord-316525-uadfehr6	82	26	to	to	IN
cord-316525-uadfehr6	82	27	an	an	DT
cord-316525-uadfehr6	82	28	extremely	extremely	RB
cord-316525-uadfehr6	82	29	strong	strong	JJ
cord-316525-uadfehr6	82	30	selection	selection	NN
cord-316525-uadfehr6	82	31	pressure	pressure	NN
cord-316525-uadfehr6	82	32	that	that	WDT
cord-316525-uadfehr6	82	33	may	may	MD
cord-316525-uadfehr6	82	34	restrict	restrict	VB
cord-316525-uadfehr6	82	35	considerably	considerably	RB
cord-316525-uadfehr6	82	36	the	the	DT
cord-316525-uadfehr6	82	37	possible	possible	JJ
cord-316525-uadfehr6	82	38	variations	variation	NNS
cord-316525-uadfehr6	82	39	of	of	IN
cord-316525-uadfehr6	82	40	the	the	DT
cord-316525-uadfehr6	82	41	corresponding	correspond	VBG
cord-316525-uadfehr6	82	42	proteins	protein	NNS
cord-316525-uadfehr6	82	43	(	(	-LRB-
cord-316525-uadfehr6	82	44	and	and	CC
cord-316525-uadfehr6	82	45	accordingly	accordingly	RB
cord-316525-uadfehr6	82	46	of	of	IN
cord-316525-uadfehr6	82	47	the	the	DT
cord-316525-uadfehr6	82	48	corresponding	correspond	VBG
cord-316525-uadfehr6	82	49	genome	genome	NN
cord-316525-uadfehr6	82	50	pieces	piece	NNS
cord-316525-uadfehr6	82	51	of	of	IN
cord-316525-uadfehr6	82	52	sequences	sequence	NNS
cord-316525-uadfehr6	82	53	)	)	-RRB-
cord-316525-uadfehr6	82	54	.	.	.
cord-316525-uadfehr6	83	1	It	-PRON-	PRP
cord-316525-uadfehr6	83	2	is	be	VBZ
cord-316525-uadfehr6	83	3	nevertheless	nevertheless	RB
cord-316525-uadfehr6	83	4	remarkable	remarkable	JJ
cord-316525-uadfehr6	83	5	that	that	IN
cord-316525-uadfehr6	83	6	,	,	,
cord-316525-uadfehr6	83	7	despite	despite	IN
cord-316525-uadfehr6	83	8	the	the	DT
cord-316525-uadfehr6	83	9	inclusion	inclusion	NN
cord-316525-uadfehr6	83	10	of	of	IN
cord-316525-uadfehr6	83	11	all	all	DT
cord-316525-uadfehr6	83	12	possible	possible	JJ
cord-316525-uadfehr6	83	13	types	type	NNS
cord-316525-uadfehr6	83	14	of	of	IN
cord-316525-uadfehr6	83	15	viruses	virus	NNS
cord-316525-uadfehr6	83	16	in	in	IN
cord-316525-uadfehr6	83	17	our	-PRON-	PRP$
cord-316525-uadfehr6	83	18	sample	sample	NN
cord-316525-uadfehr6	83	19	set	set	NN
cord-316525-uadfehr6	83	20	(	(	-LRB-
cord-316525-uadfehr6	83	21	as	as	RB
cord-316525-uadfehr6	83	22	well	well	RB
cord-316525-uadfehr6	83	23	as	as	IN
cord-316525-uadfehr6	83	24	shuffled	shuffle	VBN
cord-316525-uadfehr6	83	25	genomes	genome	NNS
cord-316525-uadfehr6	83	26	from	from	IN
cord-316525-uadfehr6	83	27	the	the	DT
cord-316525-uadfehr6	83	28	viruses	virus	NNS
cord-316525-uadfehr6	83	29	we	-PRON-	PRP
cord-316525-uadfehr6	83	30	have	have	VBP
cord-316525-uadfehr6	83	31	identified	identify	VBN
cord-316525-uadfehr6	83	32	as	as	IN
cord-316525-uadfehr6	83	33	relevant	relevant	JJ
cord-316525-uadfehr6	83	34	)	)	-RRB-
cord-316525-uadfehr6	83	35	we	-PRON-	PRP
cord-316525-uadfehr6	83	36	find	find	VBP
cord-316525-uadfehr6	83	37	a	a	DT
cord-316525-uadfehr6	83	38	more	more	RBR
cord-316525-uadfehr6	83	39	or	or	CC
cord-316525-uadfehr6	83	40	less	less	RBR
cord-316525-uadfehr6	83	41	single	single	JJ
cord-316525-uadfehr6	83	42	category	category	NN
cord-316525-uadfehr6	83	43	of	of	IN
cord-316525-uadfehr6	83	44	viruses	virus	NNS
cord-316525-uadfehr6	83	45	as	as	IN
cord-316525-uadfehr6	83	46	similar	similar	JJ
cord-316525-uadfehr6	83	47	to	to	TO
cord-316525-uadfehr6	83	48	SARS-	sars-	VB
cord-316525-uadfehr6	84	1	CoV.	CoV.	NNP
cord-316525-uadfehr6	85	1	This	this	DT
cord-316525-uadfehr6	85	2	suggests	suggest	VBZ
cord-316525-uadfehr6	85	3	that	that	IN
cord-316525-uadfehr6	85	4	even	even	RB
cord-316525-uadfehr6	85	5	if	if	IN
cord-316525-uadfehr6	85	6	the	the	DT
cord-316525-uadfehr6	85	7	contribution	contribution	NN
cord-316525-uadfehr6	85	8	of	of	IN
cord-316525-uadfehr6	85	9	convergent	convergent	JJ
cord-316525-uadfehr6	85	10	evolution	evolution	NN
cord-316525-uadfehr6	85	11	is	be	VBZ
cord-316525-uadfehr6	85	12	important	important	JJ
cord-316525-uadfehr6	85	13	,	,	,
cord-316525-uadfehr6	85	14	this	this	DT
cord-316525-uadfehr6	85	15	happened	happen	VBD
cord-316525-uadfehr6	85	16	on	on	IN
cord-316525-uadfehr6	85	17	a	a	DT
cord-316525-uadfehr6	85	18	more	more	RBR
cord-316525-uadfehr6	85	19	or	or	CC
cord-316525-uadfehr6	85	20	less	less	RBR
cord-316525-uadfehr6	85	21	common	common	JJ
cord-316525-uadfehr6	85	22	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	85	23	background	background	NN
cord-316525-uadfehr6	85	24	,	,	,
cord-316525-uadfehr6	85	25	suggesting	suggest	VBG
cord-316525-uadfehr6	85	26	several	several	JJ
cord-316525-uadfehr6	85	27	steps	step	NNS
cord-316525-uadfehr6	85	28	of	of	IN
cord-316525-uadfehr6	85	29	recombination	recombination	NN
cord-316525-uadfehr6	85	30	followed	follow	VBN
cord-316525-uadfehr6	85	31	by	by	IN
cord-316525-uadfehr6	85	32	fine	fine	JJ
cord-316525-uadfehr6	85	33	adaptation	adaptation	NN
cord-316525-uadfehr6	85	34	.	.	.
cord-316525-uadfehr6	86	1	In	in	IN
cord-316525-uadfehr6	86	2	this	this	DT
cord-316525-uadfehr6	86	3	context	context	NN
cord-316525-uadfehr6	86	4	,	,	,
cord-316525-uadfehr6	86	5	we	-PRON-	PRP
cord-316525-uadfehr6	86	6	would	would	MD
cord-316525-uadfehr6	86	7	like	like	VB
cord-316525-uadfehr6	86	8	to	to	TO
cord-316525-uadfehr6	86	9	suggest	suggest	VB
cord-316525-uadfehr6	86	10	that	that	IN
cord-316525-uadfehr6	86	11	ancestors	ancestor	NNS
cord-316525-uadfehr6	86	12	of	of	IN
cord-316525-uadfehr6	86	13	PEDV	PEDV	NNP
cord-316525-uadfehr6	86	14	,	,	,
cord-316525-uadfehr6	86	15	MHV	MHV	NNP
cord-316525-uadfehr6	86	16	or	or	CC
cord-316525-uadfehr6	86	17	both	both	DT
cord-316525-uadfehr6	86	18	are	be	VBP
cord-316525-uadfehr6	86	19	the	the	DT
cord-316525-uadfehr6	86	20	most	most	RBS
cord-316525-uadfehr6	86	21	plausible	plausible	JJ
cord-316525-uadfehr6	86	22	origin	origin	NN
cord-316525-uadfehr6	86	23	of	of	IN
cord-316525-uadfehr6	86	24	SARS	SARS	NNP
cord-316525-uadfehr6	86	25	-	-	HYPH
cord-316525-uadfehr6	86	26	CoV.	CoV.	NNP
cord-316525-uadfehr6	86	27	Guan	Guan	NNP
cord-316525-uadfehr6	86	28	et	et	FW
cord-316525-uadfehr6	86	29	al	al	NNP
cord-316525-uadfehr6	86	30	.	.	.
cord-316525-uadfehr6	87	1	[	[	-LRB-
cord-316525-uadfehr6	87	2	7	7	CD
cord-316525-uadfehr6	87	3	]	]	-RRB-
cord-316525-uadfehr6	87	4	Based	base	VBN
cord-316525-uadfehr6	87	5	on	on	IN
cord-316525-uadfehr6	87	6	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	87	7	techniques	technique	NNS
cord-316525-uadfehr6	87	8	and	and	CC
cord-316525-uadfehr6	87	9	BOOTSCAN	BOOTSCAN	NNP
cord-316525-uadfehr6	87	10	recombination	recombination	NN
cord-316525-uadfehr6	87	11	analysis	analysis	NN
cord-316525-uadfehr6	87	12	Stavrinides	stavrinide	NNS
cord-316525-uadfehr6	87	13	and	and	CC
cord-316525-uadfehr6	87	14	Guttman	Guttman	NNP
cord-316525-uadfehr6	88	1	[	[	-LRB-
cord-316525-uadfehr6	88	2	32	32	CD
cord-316525-uadfehr6	88	3	]	]	-RRB-
cord-316525-uadfehr6	88	4	indicated	indicate	VBD
cord-316525-uadfehr6	88	5	that	that	IN
cord-316525-uadfehr6	88	6	the	the	DT
cord-316525-uadfehr6	88	7	replicase	replicase	NN
cord-316525-uadfehr6	88	8	of	of	IN
cord-316525-uadfehr6	88	9	SARS	SARS	NNP
cord-316525-uadfehr6	88	10	-	-	HYPH
cord-316525-uadfehr6	88	11	CoV	CoV	NNP
cord-316525-uadfehr6	88	12	was	be	VBD
cord-316525-uadfehr6	88	13	a	a	DT
cord-316525-uadfehr6	88	14	mammalian	mammalian	JJ
cord-316525-uadfehr6	88	15	-	-	HYPH
cord-316525-uadfehr6	88	16	like	like	JJ
cord-316525-uadfehr6	88	17	origin	origin	NN
cord-316525-uadfehr6	88	18	,	,	,
cord-316525-uadfehr6	88	19	the	the	DT
cord-316525-uadfehr6	88	20	M	M	NNP
cord-316525-uadfehr6	88	21	and	and	CC
cord-316525-uadfehr6	88	22	N	n	CD
cord-316525-uadfehr6	88	23	proteins	protein	NNS
cord-316525-uadfehr6	88	24	have	have	VBP
cord-316525-uadfehr6	88	25	an	an	DT
cord-316525-uadfehr6	88	26	avian	avian	JJ
cord-316525-uadfehr6	88	27	-	-	HYPH
cord-316525-uadfehr6	88	28	like	like	JJ
cord-316525-uadfehr6	88	29	origin	origin	NN
cord-316525-uadfehr6	88	30	,	,	,
cord-316525-uadfehr6	88	31	and	and	CC
cord-316525-uadfehr6	88	32	the	the	DT
cord-316525-uadfehr6	88	33	S	S	NNP
cord-316525-uadfehr6	88	34	protein	protein	NN
cord-316525-uadfehr6	88	35	has	have	VBZ
cord-316525-uadfehr6	88	36	a	a	DT
cord-316525-uadfehr6	88	37	mammalian	mammalian	JJ
cord-316525-uadfehr6	88	38	-	-	HYPH
cord-316525-uadfehr6	88	39	avian	avian	JJ
cord-316525-uadfehr6	88	40	mosaic	mosaic	JJ
cord-316525-uadfehr6	88	41	origin	origin	NN
cord-316525-uadfehr6	88	42	.	.	.
cord-316525-uadfehr6	89	1	While	while	IN
cord-316525-uadfehr6	89	2	in	in	IN
cord-316525-uadfehr6	89	3	the	the	DT
cord-316525-uadfehr6	89	4	present	present	JJ
cord-316525-uadfehr6	89	5	study	study	NN
cord-316525-uadfehr6	89	6	we	-PRON-	PRP
cord-316525-uadfehr6	89	7	used	use	VBD
cord-316525-uadfehr6	89	8	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	89	9	analysis	analysis	NN
cord-316525-uadfehr6	89	10	and	and	CC
cord-316525-uadfehr6	89	11	7	7	CD
cord-316525-uadfehr6	89	12	recombination	recombination	NN
cord-316525-uadfehr6	89	13	detection	detection	NN
cord-316525-uadfehr6	89	14	methods	method	NNS
cord-316525-uadfehr6	89	15	,	,	,
cord-316525-uadfehr6	89	16	including	include	VBG
cord-316525-uadfehr6	89	17	the	the	DT
cord-316525-uadfehr6	89	18	powerful	powerful	JJ
cord-316525-uadfehr6	89	19	methods	method	NNS
cord-316525-uadfehr6	89	20	of	of	IN
cord-316525-uadfehr6	89	21	MAXCHI	MAXCHI	NNP
cord-316525-uadfehr6	89	22	and	and	CC
cord-316525-uadfehr6	89	23	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	89	24	among	among	IN
cord-316525-uadfehr6	89	25	14	14	CD
cord-316525-uadfehr6	89	26	methods	method	NNS
cord-316525-uadfehr6	89	27	studied	study	VBN
cord-316525-uadfehr6	89	28	(	(	-LRB-
cord-316525-uadfehr6	89	29	SIMPLOT	SIMPLOT	NNP
cord-316525-uadfehr6	89	30	(	(	-LRB-
cord-316525-uadfehr6	89	31	BOOTSCAN	BOOTSCAN	NNP
cord-316525-uadfehr6	89	32	)	)	-RRB-
cord-316525-uadfehr6	89	33	,	,	,
cord-316525-uadfehr6	89	34	GENECONV	GENECONV	NNP
cord-316525-uadfehr6	89	35	,	,	,
cord-316525-uadfehr6	89	36	HOMOPLASY	HOMOPLASY	NNP
cord-316525-uadfehr6	89	37	TEST	test	NN
cord-316525-uadfehr6	89	38	,	,	,
cord-316525-uadfehr6	89	39	PIST	PIST	NNP
cord-316525-uadfehr6	89	40	,	,	,
cord-316525-uadfehr6	89	41	 	 	_SP
cord-316525-uadfehr6	89	42	MAXCHI	MAXCHI	NNP
cord-316525-uadfehr6	89	43	,	,	,
cord-316525-uadfehr6	89	44	CHIMAERA	CHIMAERA	NNP
cord-316525-uadfehr6	89	45	,	,	,
cord-316525-uadfehr6	89	46	PHYPRO	PHYPRO	NNP
cord-316525-uadfehr6	89	47	,	,	,
cord-316525-uadfehr6	89	48	PLATO	PLATO	NNP
cord-316525-uadfehr6	89	49	,	,	,
cord-316525-uadfehr6	89	50	RDP	RDP	NNP
cord-316525-uadfehr6	89	51	,	,	,
cord-316525-uadfehr6	89	52	RECPARS	recpar	NNS
cord-316525-uadfehr6	89	53	,	,	,
cord-316525-uadfehr6	89	54	RETICULATE	RETICULATE	NNP
cord-316525-uadfehr6	89	55	,	,	,
cord-316525-uadfehr6	89	56	 	 	_SP
cord-316525-uadfehr6	89	57	RUNS	RUNS	NNP
cord-316525-uadfehr6	89	58	TEST	test	NN
cord-316525-uadfehr6	89	59	,	,	,
cord-316525-uadfehr6	89	60	SNEATH	SNEATH	NNP
cord-316525-uadfehr6	89	61	TEST	test	NN
cord-316525-uadfehr6	89	62	,	,	,
cord-316525-uadfehr6	89	63	TRIPLE	TRIPLE	NNP
cord-316525-uadfehr6	89	64	)	)	-RRB-
cord-316525-uadfehr6	89	65	[	[	-LRB-
cord-316525-uadfehr6	89	66	23	23	CD
cord-316525-uadfehr6	89	67	,	,	,
cord-316525-uadfehr6	89	68	24	24	CD
cord-316525-uadfehr6	89	69	]	]	-RRB-
cord-316525-uadfehr6	89	70	,	,	,
cord-316525-uadfehr6	89	71	to	to	TO
cord-316525-uadfehr6	89	72	conduct	conduct	VB
cord-316525-uadfehr6	89	73	whole	whole	JJ
cord-316525-uadfehr6	89	74	genomewide	genomewide	NNP
cord-316525-uadfehr6	89	75	recombination	recombination	NN
cord-316525-uadfehr6	89	76	analysis	analysis	NN
cord-316525-uadfehr6	89	77	.	.	.
cord-316525-uadfehr6	90	1	We	-PRON-	PRP
cord-316525-uadfehr6	90	2	identified	identify	VBD
cord-316525-uadfehr6	90	3	seven	seven	CD
cord-316525-uadfehr6	90	4	putative	putative	JJ
cord-316525-uadfehr6	90	5	recombination	recombination	NN
cord-316525-uadfehr6	90	6	regions	region	NNS
cord-316525-uadfehr6	90	7	,	,	,
cord-316525-uadfehr6	90	8	which	which	WDT
cord-316525-uadfehr6	90	9	encompass	encompass	VBP
cord-316525-uadfehr6	90	10	,	,	,
cord-316525-uadfehr6	90	11	in	in	IN
cord-316525-uadfehr6	90	12	terms	term	NNS
cord-316525-uadfehr6	90	13	of	of	IN
cord-316525-uadfehr6	90	14	proteins	protein	NNS
cord-316525-uadfehr6	90	15	involved	involve	VBN
cord-316525-uadfehr6	90	16	,	,	,
cord-316525-uadfehr6	90	17	replicase	replicase	NNP
cord-316525-uadfehr6	90	18	1A	1A	NNP
cord-316525-uadfehr6	90	19	,	,	,
cord-316525-uadfehr6	90	20	replicase	replicase	NNP
cord-316525-uadfehr6	90	21	1B	1B	NNP
cord-316525-uadfehr6	90	22	and	and	CC
cord-316525-uadfehr6	90	23	the	the	DT
cord-316525-uadfehr6	90	24	spike	spike	NN
cord-316525-uadfehr6	90	25	glycoprotein	glycoprotein	NN
cord-316525-uadfehr6	90	26	.	.	.
cord-316525-uadfehr6	91	1	Stavrinides	Stavrinides	NNP
cord-316525-uadfehr6	91	2	and	and	CC
cord-316525-uadfehr6	91	3	Guttman	Guttman	NNP
cord-316525-uadfehr6	91	4	[	[	-LRB-
cord-316525-uadfehr6	91	5	32	32	CD
cord-316525-uadfehr6	91	6	]	]	-RRB-
cord-316525-uadfehr6	91	7	primarily	primarily	RB
cord-316525-uadfehr6	91	8	inferred	infer	VBD
cord-316525-uadfehr6	91	9	the	the	DT
cord-316525-uadfehr6	91	10	occurrence	occurrence	NN
cord-316525-uadfehr6	91	11	of	of	IN
cord-316525-uadfehr6	91	12	recombination	recombination	NN
cord-316525-uadfehr6	91	13	qualitatively	qualitatively	RB
cord-316525-uadfehr6	91	14	,	,	,
cord-316525-uadfehr6	91	15	but	but	CC
cord-316525-uadfehr6	91	16	did	do	VBD
cord-316525-uadfehr6	91	17	not	not	RB
cord-316525-uadfehr6	91	18	identify	identify	VB
cord-316525-uadfehr6	91	19	the	the	DT
cord-316525-uadfehr6	91	20	precise	precise	JJ
cord-316525-uadfehr6	91	21	recombination	recombination	NN
cord-316525-uadfehr6	91	22	region	region	NN
cord-316525-uadfehr6	91	23	in	in	IN
cord-316525-uadfehr6	91	24	the	the	DT
cord-316525-uadfehr6	91	25	protein	protein	NN
cord-316525-uadfehr6	91	26	involved	involve	VBN
cord-316525-uadfehr6	91	27	(	(	-LRB-
cord-316525-uadfehr6	91	28	the	the	DT
cord-316525-uadfehr6	91	29	S	S	NNP
cord-316525-uadfehr6	91	30	protein	protein	NN
cord-316525-uadfehr6	91	31	is	be	VBZ
cord-316525-uadfehr6	91	32	an	an	DT
cord-316525-uadfehr6	91	33	exception	exception	NN
cord-316525-uadfehr6	91	34	,	,	,
cord-316525-uadfehr6	91	35	they	-PRON-	PRP
cord-316525-uadfehr6	91	36	identified	identify	VBD
cord-316525-uadfehr6	91	37	a	a	DT
cord-316525-uadfehr6	91	38	recombination	recombination	NN
cord-316525-uadfehr6	91	39	region	region	NN
cord-316525-uadfehr6	91	40	in	in	IN
cord-316525-uadfehr6	91	41	S	S	NNP
cord-316525-uadfehr6	91	42	protein	protein	NN
cord-316525-uadfehr6	91	43	,	,	,
cord-316525-uadfehr6	91	44	located	locate	VBN
cord-316525-uadfehr6	91	45	between	between	IN
cord-316525-uadfehr6	91	46	nucleotides	nucleotide	NNS
cord-316525-uadfehr6	91	47	2472	2472	CD
cord-316525-uadfehr6	91	48	and	and	CC
cord-316525-uadfehr6	91	49	2694	2694	CD
cord-316525-uadfehr6	91	50	of	of	IN
cord-316525-uadfehr6	91	51	the	the	DT
cord-316525-uadfehr6	91	52	S	S	NNP
cord-316525-uadfehr6	91	53	protein	protein	NN
cord-316525-uadfehr6	91	54	,	,	,
cord-316525-uadfehr6	91	55	i.e.	i.e.	FW
cord-316525-uadfehr6	91	56	between	between	IN
cord-316525-uadfehr6	91	57	nucleotides	nucleotide	NNS
cord-316525-uadfehr6	91	58	23963	23963	CD
cord-316525-uadfehr6	91	59	and	and	CC
cord-316525-uadfehr6	91	60	24185	24185	CD
cord-316525-uadfehr6	91	61	of	of	IN
cord-316525-uadfehr6	91	62	the	the	DT
cord-316525-uadfehr6	91	63	SARS	SARS	NNP
cord-316525-uadfehr6	91	64	-	-	HYPH
cord-316525-uadfehr6	91	65	CoV	CoV	NNP
cord-316525-uadfehr6	91	66	genome	genome	NN
cord-316525-uadfehr6	91	67	,	,	,
cord-316525-uadfehr6	91	68	basically	basically	RB
cord-316525-uadfehr6	91	69	covered	cover	VBN
cord-316525-uadfehr6	91	70	by	by	IN
cord-316525-uadfehr6	91	71	the	the	DT
cord-316525-uadfehr6	91	72	last	last	JJ
cord-316525-uadfehr6	91	73	recombination	recombination	NN
cord-316525-uadfehr6	91	74	region	region	NN
cord-316525-uadfehr6	91	75	for	for	IN
cord-316525-uadfehr6	91	76	S	s	NN
cord-316525-uadfehr6	91	77	protein	protein	NN
cord-316525-uadfehr6	91	78	(	(	-LRB-
cord-316525-uadfehr6	91	79	Table	Table	NNP
cord-316525-uadfehr6	91	80	6	6	CD
cord-316525-uadfehr6	91	81	)	)	-RRB-
cord-316525-uadfehr6	91	82	)	)	-RRB-
cord-316525-uadfehr6	91	83	.	.	.
cord-316525-uadfehr6	92	1	Most	most	RBS
cord-316525-uadfehr6	92	2	importantly	importantly	RB
cord-316525-uadfehr6	92	3	,	,	,
cord-316525-uadfehr6	92	4	each	each	DT
cord-316525-uadfehr6	92	5	of	of	IN
cord-316525-uadfehr6	92	6	our	-PRON-	PRP$
cord-316525-uadfehr6	92	7	recombination	recombination	NN
cord-316525-uadfehr6	92	8	regions	region	NNS
cord-316525-uadfehr6	92	9	is	be	VBZ
cord-316525-uadfehr6	92	10	identified	identify	VBN
cord-316525-uadfehr6	92	11	by	by	IN
cord-316525-uadfehr6	92	12	at	at	RB
cord-316525-uadfehr6	92	13	least	least	JJS
cord-316525-uadfehr6	92	14	3	3	CD
cord-316525-uadfehr6	92	15	methods	method	NNS
cord-316525-uadfehr6	92	16	,	,	,
cord-316525-uadfehr6	92	17	because	because	IN
cord-316525-uadfehr6	92	18	one	one	PRP
cord-316525-uadfehr6	92	19	should	should	MD
cord-316525-uadfehr6	92	20	not	not	RB
cord-316525-uadfehr6	92	21	rely	rely	VB
cord-316525-uadfehr6	92	22	too	too	RB
cord-316525-uadfehr6	92	23	much	much	RB
cord-316525-uadfehr6	92	24	on	on	IN
cord-316525-uadfehr6	92	25	a	a	DT
cord-316525-uadfehr6	92	26	single	single	JJ
cord-316525-uadfehr6	92	27	method	method	NN
cord-316525-uadfehr6	92	28	,	,	,
cord-316525-uadfehr6	92	29	as	as	IN
cord-316525-uadfehr6	92	30	suggested	suggest	VBN
cord-316525-uadfehr6	92	31	in	in	IN
cord-316525-uadfehr6	92	32	[	[	-LRB-
cord-316525-uadfehr6	92	33	23	23	CD
cord-316525-uadfehr6	92	34	]	]	-RRB-
cord-316525-uadfehr6	92	35	.	.	.
cord-316525-uadfehr6	93	1	In	in	IN
cord-316525-uadfehr6	93	2	general	general	JJ
cord-316525-uadfehr6	93	3	,	,	,
cord-316525-uadfehr6	93	4	we	-PRON-	PRP
cord-316525-uadfehr6	93	5	believe	believe	VBP
cord-316525-uadfehr6	93	6	two	two	CD
cord-316525-uadfehr6	93	7	studies	study	NNS
cord-316525-uadfehr6	93	8	lead	lead	VBP
cord-316525-uadfehr6	93	9	to	to	IN
cord-316525-uadfehr6	93	10	the	the	DT
cord-316525-uadfehr6	93	11	overall	overall	JJ
cord-316525-uadfehr6	93	12	conclusion	conclusion	NN
cord-316525-uadfehr6	93	13	:	:	:
cord-316525-uadfehr6	93	14	the	the	DT
cord-316525-uadfehr6	93	15	evolution	evolution	NN
cord-316525-uadfehr6	93	16	of	of	IN
cord-316525-uadfehr6	93	17	SARS	SARS	NNP
cord-316525-uadfehr6	93	18	-	-	HYPH
cord-316525-uadfehr6	93	19	CoV	CoV	NNP
cord-316525-uadfehr6	93	20	has	have	VBZ
cord-316525-uadfehr6	93	21	involved	involve	VBN
cord-316525-uadfehr6	93	22	recombination	recombination	NN
cord-316525-uadfehr6	93	23	.	.	.
cord-316525-uadfehr6	94	1	The	the	DT
cord-316525-uadfehr6	94	2	recombination	recombination	NN
cord-316525-uadfehr6	94	3	event	event	NN
cord-316525-uadfehr6	94	4	in	in	IN
cord-316525-uadfehr6	94	5	the	the	DT
cord-316525-uadfehr6	94	6	replicase	replicase	NN
cord-316525-uadfehr6	94	7	is	be	VBZ
cord-316525-uadfehr6	94	8	related	relate	VBN
cord-316525-uadfehr6	94	9	to	to	IN
cord-316525-uadfehr6	94	10	the	the	DT
cord-316525-uadfehr6	94	11	fact	fact	NN
cord-316525-uadfehr6	94	12	that	that	IN
cord-316525-uadfehr6	94	13	the	the	DT
cord-316525-uadfehr6	94	14	RNA	RNA	NNP
cord-316525-uadfehr6	94	15	polymerase	polymerase	NN
cord-316525-uadfehr6	94	16	of	of	IN
cord-316525-uadfehr6	94	17	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	94	18	utilize	utilize	VBP
cord-316525-uadfehr6	94	19	a	a	DT
cord-316525-uadfehr6	94	20	discontinuous	discontinuous	JJ
cord-316525-uadfehr6	94	21	transcription	transcription	NN
cord-316525-uadfehr6	94	22	mechanism	mechanism	NN
cord-316525-uadfehr6	94	23	to	to	TO
cord-316525-uadfehr6	94	24	synthesize	synthesize	VB
cord-316525-uadfehr6	94	25	mRNAs	mrnas	CD
cord-316525-uadfehr6	94	26	.	.	.
cord-316525-uadfehr6	95	1	The	the	DT
cord-316525-uadfehr6	95	2	viral	viral	JJ
cord-316525-uadfehr6	95	3	polymerase	polymerase	NN
cord-316525-uadfehr6	95	4	must	must	MD
cord-316525-uadfehr6	95	5	jump	jump	VB
cord-316525-uadfehr6	95	6	between	between	IN
cord-316525-uadfehr6	95	7	different	different	JJ
cord-316525-uadfehr6	95	8	RNA	RNA	NNP
cord-316525-uadfehr6	95	9	templates	template	NNS
cord-316525-uadfehr6	95	10	regularly	regularly	RB
cord-316525-uadfehr6	95	11	during	during	IN
cord-316525-uadfehr6	95	12	positive	positive	JJ
cord-316525-uadfehr6	95	13	-	-	HYPH
cord-316525-uadfehr6	95	14	or	or	CC
cord-316525-uadfehr6	95	15	negative	negative	JJ
cord-316525-uadfehr6	95	16	-	-	HYPH
cord-316525-uadfehr6	95	17	strand	strand	NN
cord-316525-uadfehr6	95	18	RNA	RNA	NNP
cord-316525-uadfehr6	95	19	synthesis	synthesis	NN
cord-316525-uadfehr6	95	20	and	and	CC
cord-316525-uadfehr6	95	21	depending	depend	VBG
cord-316525-uadfehr6	95	22	on	on	IN
cord-316525-uadfehr6	95	23	the	the	DT
cord-316525-uadfehr6	95	24	rejoining	rejoin	VBG
cord-316525-uadfehr6	95	25	sites	site	NNS
cord-316525-uadfehr6	95	26	,	,	,
cord-316525-uadfehr6	95	27	the	the	DT
cord-316525-uadfehr6	95	28	resultant	resultant	JJ
cord-316525-uadfehr6	95	29	RNA	RNA	NNP
cord-316525-uadfehr6	95	30	recombination	recombination	NN
cord-316525-uadfehr6	95	31	will	will	MD
cord-316525-uadfehr6	95	32	be	be	VB
cord-316525-uadfehr6	95	33	either	either	CC
cord-316525-uadfehr6	95	34	homologous	homologous	JJ
cord-316525-uadfehr6	95	35	or	or	CC
cord-316525-uadfehr6	95	36	nonhomologous	nonhomologous	JJ
cord-316525-uadfehr6	95	37	.	.	.
cord-316525-uadfehr6	96	1	This	this	DT
cord-316525-uadfehr6	96	2	is	be	VBZ
cord-316525-uadfehr6	96	3	the	the	DT
cord-316525-uadfehr6	96	4	copy	copy	NN
cord-316525-uadfehr6	96	5	-	-	HYPH
cord-316525-uadfehr6	96	6	choice	choice	NN
cord-316525-uadfehr6	96	7	model	model	NN
cord-316525-uadfehr6	96	8	of	of	IN
cord-316525-uadfehr6	96	9	recombination	recombination	NN
cord-316525-uadfehr6	96	10	in	in	IN
cord-316525-uadfehr6	96	11	RNA	RNA	NNP
cord-316525-uadfehr6	96	12	viruses	virus	NNS
cord-316525-uadfehr6	96	13	[	[	-LRB-
cord-316525-uadfehr6	96	14	13	13	CD
cord-316525-uadfehr6	96	15	,	,	,
cord-316525-uadfehr6	96	16	27	27	CD
cord-316525-uadfehr6	96	17	,	,	,
cord-316525-uadfehr6	96	18	31	31	CD
cord-316525-uadfehr6	96	19	,	,	,
cord-316525-uadfehr6	96	20	34	34	CD
cord-316525-uadfehr6	96	21	]	]	-RRB-
cord-316525-uadfehr6	96	22	.	.	.
cord-316525-uadfehr6	97	1	The	the	DT
cord-316525-uadfehr6	97	2	recombination	recombination	NN
cord-316525-uadfehr6	97	3	event	event	NN
cord-316525-uadfehr6	97	4	in	in	IN
cord-316525-uadfehr6	97	5	S	S	NNP
cord-316525-uadfehr6	97	6	protein	protein	NN
cord-316525-uadfehr6	97	7	is	be	VBZ
cord-316525-uadfehr6	97	8	certainly	certainly	RB
cord-316525-uadfehr6	97	9	important	important	JJ
cord-316525-uadfehr6	97	10	since	since	IN
cord-316525-uadfehr6	97	11	this	this	DT
cord-316525-uadfehr6	97	12	allows	allow	VBZ
cord-316525-uadfehr6	97	13	the	the	DT
cord-316525-uadfehr6	97	14	virus	virus	NN
cord-316525-uadfehr6	97	15	to	to	TO
cord-316525-uadfehr6	97	16	alter	alter	VB
cord-316525-uadfehr6	97	17	surface	surface	NN
cord-316525-uadfehr6	97	18	antigenicity	antigenicity	NN
cord-316525-uadfehr6	97	19	and	and	CC
cord-316525-uadfehr6	97	20	escape	escape	VB
cord-316525-uadfehr6	97	21	immunesurveillance	immunesurveillance	NN
cord-316525-uadfehr6	97	22	in	in	IN
cord-316525-uadfehr6	97	23	the	the	DT
cord-316525-uadfehr6	97	24	animals	animal	NNS
cord-316525-uadfehr6	97	25	,	,	,
cord-316525-uadfehr6	97	26	thus	thus	RB
cord-316525-uadfehr6	97	27	adapting	adapt	VBG
cord-316525-uadfehr6	97	28	to	to	IN
cord-316525-uadfehr6	97	29	a	a	DT
cord-316525-uadfehr6	97	30	human	human	JJ
cord-316525-uadfehr6	97	31	host	host	NN
cord-316525-uadfehr6	97	32	.	.	.
cord-316525-uadfehr6	98	1	The	the	DT
cord-316525-uadfehr6	98	2	existence	existence	NN
cord-316525-uadfehr6	98	3	of	of	IN
cord-316525-uadfehr6	98	4	SARS	SARS	NNP
cord-316525-uadfehr6	98	5	-	-	HYPH
cord-316525-uadfehr6	98	6	CoV	CoV	NNP
cord-316525-uadfehr6	98	7	-	-	HYPH
cord-316525-uadfehr6	98	8	like	like	JJ
cord-316525-uadfehr6	98	9	viruses	virus	NNS
cord-316525-uadfehr6	98	10	(	(	-LRB-
cord-316525-uadfehr6	98	11	99.8	99.8	CD
cord-316525-uadfehr6	98	12	%	%	NN
cord-316525-uadfehr6	98	13	homology	homology	NN
cord-316525-uadfehr6	98	14	to	to	IN
cord-316525-uadfehr6	98	15	human	human	JJ
cord-316525-uadfehr6	98	16	SARS	SARS	NNP
cord-316525-uadfehr6	98	17	-	-	HYPH
cord-316525-uadfehr6	98	18	CoV	CoV	NNP
cord-316525-uadfehr6	98	19	)	)	-RRB-
cord-316525-uadfehr6	98	20	in	in	IN
cord-316525-uadfehr6	98	21	several	several	JJ
cord-316525-uadfehr6	98	22	wild	wild	JJ
cord-316525-uadfehr6	98	23	animals	animal	NNS
cord-316525-uadfehr6	98	24	in	in	IN
cord-316525-uadfehr6	98	25	a	a	DT
cord-316525-uadfehr6	98	26	live	live	JJ
cord-316525-uadfehr6	98	27	animal	animal	NN
cord-316525-uadfehr6	98	28	market	market	NN
cord-316525-uadfehr6	98	29	in	in	IN
cord-316525-uadfehr6	98	30	Guangdong	Guangdong	NNP
cord-316525-uadfehr6	98	31	[	[	-LRB-
cord-316525-uadfehr6	98	32	7	7	CD
cord-316525-uadfehr6	98	33	]	]	-RRB-
cord-316525-uadfehr6	98	34	indicated	indicate	VBD
cord-316525-uadfehr6	98	35	that	that	IN
cord-316525-uadfehr6	98	36	interspecies	interspecie	NNS
cord-316525-uadfehr6	98	37	transmission	transmission	NN
cord-316525-uadfehr6	98	38	among	among	IN
cord-316525-uadfehr6	98	39	the	the	DT
cord-316525-uadfehr6	98	40	human	human	JJ
cord-316525-uadfehr6	98	41	and	and	CC
cord-316525-uadfehr6	98	42	animal	animal	NN
cord-316525-uadfehr6	98	43	SARS	SARS	NNP
cord-316525-uadfehr6	98	44	-	-	HYPH
cord-316525-uadfehr6	98	45	CoV	CoV	NNP
cord-316525-uadfehr6	98	46	-	-	HYPH
cord-316525-uadfehr6	98	47	like	like	JJ
cord-316525-uadfehr6	98	48	viruses	virus	NNS
cord-316525-uadfehr6	98	49	had	have	VBD
cord-316525-uadfehr6	98	50	occurred	occur	VBN
cord-316525-uadfehr6	98	51	.	.	.
cord-316525-uadfehr6	99	1	The	the	DT
cord-316525-uadfehr6	99	2	mutation	mutation	NN
cord-316525-uadfehr6	99	3	analysis	analysis	NN
cord-316525-uadfehr6	99	4	of	of	IN
cord-316525-uadfehr6	99	5	sequence	sequence	NN
cord-316525-uadfehr6	99	6	variations	variation	NNS
cord-316525-uadfehr6	99	7	among	among	IN
cord-316525-uadfehr6	99	8	these	these	DT
cord-316525-uadfehr6	99	9	isolates	isolate	NNS
cord-316525-uadfehr6	99	10	will	will	MD
cord-316525-uadfehr6	99	11	help	help	VB
cord-316525-uadfehr6	99	12	identify	identify	VB
cord-316525-uadfehr6	99	13	the	the	DT
cord-316525-uadfehr6	99	14	genetic	genetic	JJ
cord-316525-uadfehr6	99	15	signature	signature	NN
cord-316525-uadfehr6	99	16	of	of	IN
cord-316525-uadfehr6	99	17	SARS	SARS	NNP
cord-316525-uadfehr6	99	18	virus	virus	NN
cord-316525-uadfehr6	99	19	strains	strain	VBZ
cord-316525-uadfehr6	99	20	when	when	WRB
cord-316525-uadfehr6	99	21	a	a	DT
cord-316525-uadfehr6	99	22	sufficient	sufficient	JJ
cord-316525-uadfehr6	99	23	amount	amount	NN
cord-316525-uadfehr6	99	24	of	of	IN
cord-316525-uadfehr6	99	25	sequence	sequence	NN
cord-316525-uadfehr6	99	26	data	data	NN
cord-316525-uadfehr6	99	27	is	be	VBZ
cord-316525-uadfehr6	99	28	available	available	JJ
cord-316525-uadfehr6	99	29	.	.	.
cord-316525-uadfehr6	100	1	The	the	DT
cord-316525-uadfehr6	100	2	very	very	JJ
cord-316525-uadfehr6	100	3	fact	fact	NN
cord-316525-uadfehr6	100	4	that	that	IN
cord-316525-uadfehr6	100	5	several	several	JJ
cord-316525-uadfehr6	100	6	species	specie	NNS
cord-316525-uadfehr6	100	7	of	of	IN
cord-316525-uadfehr6	100	8	animals	animal	NNS
cord-316525-uadfehr6	100	9	are	be	VBP
cord-316525-uadfehr6	100	10	affected	affect	VBN
cord-316525-uadfehr6	100	11	does	do	VBZ
cord-316525-uadfehr6	100	12	not	not	RB
cord-316525-uadfehr6	100	13	allow	allow	VB
cord-316525-uadfehr6	100	14	one	one	CD
cord-316525-uadfehr6	100	15	to	to	TO
cord-316525-uadfehr6	100	16	trace	trace	VB
cord-316525-uadfehr6	100	17	directly	directly	RB
cord-316525-uadfehr6	100	18	the	the	DT
cord-316525-uadfehr6	100	19	origin	origin	NN
cord-316525-uadfehr6	100	20	of	of	IN
cord-316525-uadfehr6	100	21	the	the	DT
cord-316525-uadfehr6	100	22	virus	virus	NN
cord-316525-uadfehr6	100	23	as	as	IN
cord-316525-uadfehr6	100	24	endemic	endemic	JJ
cord-316525-uadfehr6	100	25	in	in	IN
cord-316525-uadfehr6	100	26	one	one	CD
cord-316525-uadfehr6	100	27	of	of	IN
cord-316525-uadfehr6	100	28	these	these	DT
cord-316525-uadfehr6	100	29	species	specie	NNS
cord-316525-uadfehr6	100	30	,	,	,
cord-316525-uadfehr6	100	31	but	but	CC
cord-316525-uadfehr6	100	32	,	,	,
cord-316525-uadfehr6	100	33	rather	rather	RB
cord-316525-uadfehr6	100	34	,	,	,
cord-316525-uadfehr6	100	35	might	may	MD
cord-316525-uadfehr6	100	36	be	be	VB
cord-316525-uadfehr6	100	37	indicative	indicative	JJ
cord-316525-uadfehr6	100	38	that	that	IN
cord-316525-uadfehr6	100	39	animals	animal	NNS
cord-316525-uadfehr6	100	40	and	and	CC
cord-316525-uadfehr6	100	41	men	man	NNS
cord-316525-uadfehr6	100	42	might	may	MD
cord-316525-uadfehr6	100	43	have	have	VB
cord-316525-uadfehr6	100	44	been	be	VBN
cord-316525-uadfehr6	100	45	contaminated	contaminate	VBN
cord-316525-uadfehr6	100	46	by	by	IN
cord-316525-uadfehr6	100	47	a	a	DT
cord-316525-uadfehr6	100	48	virus	virus	NN
cord-316525-uadfehr6	100	49	from	from	IN
cord-316525-uadfehr6	100	50	a	a	DT
cord-316525-uadfehr6	100	51	common	common	JJ
cord-316525-uadfehr6	100	52	origin	origin	NN
cord-316525-uadfehr6	100	53	,	,	,
cord-316525-uadfehr6	100	54	presumably	presumably	RB
cord-316525-uadfehr6	100	55	located	locate	VBN
cord-316525-uadfehr6	100	56	in	in	IN
cord-316525-uadfehr6	100	57	animal	animal	NN
cord-316525-uadfehr6	100	58	food	food	NN
cord-316525-uadfehr6	100	59	present	present	JJ
cord-316525-uadfehr6	100	60	in	in	IN
cord-316525-uadfehr6	100	61	local	local	JJ
cord-316525-uadfehr6	100	62	markets	market	NNS
cord-316525-uadfehr6	100	63	in	in	IN
cord-316525-uadfehr6	100	64	the	the	DT
cord-316525-uadfehr6	100	65	Guangdong	Guangdong	NNP
cord-316525-uadfehr6	100	66	province	province	NN
cord-316525-uadfehr6	100	67	.	.	.
cord-316525-uadfehr6	101	1	Investigating	investigate	VBG
cord-316525-uadfehr6	101	2	a	a	DT
cord-316525-uadfehr6	101	3	wide	wide	JJ
cord-316525-uadfehr6	101	4	variety	variety	NN
cord-316525-uadfehr6	101	5	of	of	IN
cord-316525-uadfehr6	101	6	animal	animal	NN
cord-316525-uadfehr6	101	7	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	101	8	,	,	,
cord-316525-uadfehr6	101	9	especially	especially	RB
cord-316525-uadfehr6	101	10	in	in	IN
cord-316525-uadfehr6	101	11	relation	relation	NN
cord-316525-uadfehr6	101	12	to	to	IN
cord-316525-uadfehr6	101	13	rodents	rodent	NNS
cord-316525-uadfehr6	101	14	,	,	,
cord-316525-uadfehr6	101	15	birds	bird	NNS
cord-316525-uadfehr6	101	16	,	,	,
cord-316525-uadfehr6	101	17	snakes	snake	NNS
cord-316525-uadfehr6	101	18	and	and	CC
cord-316525-uadfehr6	101	19	farm	farm	NN
cord-316525-uadfehr6	101	20	animals	animal	NNS
cord-316525-uadfehr6	101	21	,	,	,
cord-316525-uadfehr6	101	22	would	would	MD
cord-316525-uadfehr6	101	23	be	be	VB
cord-316525-uadfehr6	101	24	interesting	interesting	JJ
cord-316525-uadfehr6	101	25	with	with	IN
cord-316525-uadfehr6	101	26	regard	regard	NN
cord-316525-uadfehr6	101	27	to	to	IN
cord-316525-uadfehr6	101	28	the	the	DT
cord-316525-uadfehr6	101	29	origin	origin	NN
cord-316525-uadfehr6	101	30	of	of	IN
cord-316525-uadfehr6	101	31	the	the	DT
cord-316525-uadfehr6	101	32	SARS	SARS	NNP
cord-316525-uadfehr6	101	33	-	-	HYPH
cord-316525-uadfehr6	101	34	CoV	CoV	NNP
cord-316525-uadfehr6	101	35	that	that	WDT
cord-316525-uadfehr6	101	36	caused	cause	VBD
cord-316525-uadfehr6	101	37	disease	disease	NN
cord-316525-uadfehr6	101	38	in	in	IN
cord-316525-uadfehr6	101	39	humans	human	NNS
cord-316525-uadfehr6	101	40	.	.	.
cord-316525-uadfehr6	102	1	Finally	finally	RB
cord-316525-uadfehr6	102	2	,	,	,
cord-316525-uadfehr6	102	3	a	a	DT
cord-316525-uadfehr6	102	4	challenging	challenging	JJ
cord-316525-uadfehr6	102	5	question	question	NN
cord-316525-uadfehr6	102	6	arises	arise	VBZ
cord-316525-uadfehr6	102	7	.	.	.
cord-316525-uadfehr6	103	1	What	what	WP
cord-316525-uadfehr6	103	2	is	be	VBZ
cord-316525-uadfehr6	103	3	the	the	DT
cord-316525-uadfehr6	103	4	molecular	molecular	JJ
cord-316525-uadfehr6	103	5	basis	basis	NN
cord-316525-uadfehr6	103	6	of	of	IN
cord-316525-uadfehr6	103	7	recombination	recombination	NN
cord-316525-uadfehr6	103	8	in	in	IN
cord-316525-uadfehr6	103	9	SARS	SARS	NNP
cord-316525-uadfehr6	103	10	-	-	HYPH
cord-316525-uadfehr6	103	11	CoV	CoV	NNP
cord-316525-uadfehr6	103	12	?	?	.
cord-316525-uadfehr6	104	1	Many	many	JJ
cord-316525-uadfehr6	104	2	requirements	requirement	NNS
cord-316525-uadfehr6	104	3	are	be	VBP
cord-316525-uadfehr6	104	4	needed	need	VBN
cord-316525-uadfehr6	104	5	for	for	IN
cord-316525-uadfehr6	104	6	recombination	recombination	NN
cord-316525-uadfehr6	104	7	to	to	TO
cord-316525-uadfehr6	104	8	occur	occur	VB
cord-316525-uadfehr6	104	9	:	:	:
cord-316525-uadfehr6	104	10	(	(	-LRB-
cord-316525-uadfehr6	104	11	1	1	LS
cord-316525-uadfehr6	104	12	)	)	-RRB-
cord-316525-uadfehr6	104	13	Two	two	CD
cord-316525-uadfehr6	104	14	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	104	15	can	can	MD
cord-316525-uadfehr6	104	16	infect	infect	VB
cord-316525-uadfehr6	104	17	a	a	DT
cord-316525-uadfehr6	104	18	host	host	NN
cord-316525-uadfehr6	104	19	simultaneously	simultaneously	RB
cord-316525-uadfehr6	104	20	and	and	CC
cord-316525-uadfehr6	104	21	continue	continue	VBP
cord-316525-uadfehr6	104	22	to	to	TO
cord-316525-uadfehr6	104	23	replicate	replicate	VB
cord-316525-uadfehr6	104	24	without	without	IN
cord-316525-uadfehr6	104	25	interference	interference	NN
cord-316525-uadfehr6	104	26	with	with	IN
cord-316525-uadfehr6	104	27	each	each	DT
cord-316525-uadfehr6	104	28	other	other	JJ
cord-316525-uadfehr6	104	29	;	;	:
cord-316525-uadfehr6	104	30	(	(	-LRB-
cord-316525-uadfehr6	104	31	2	2	LS
cord-316525-uadfehr6	104	32	)	)	-RRB-
cord-316525-uadfehr6	104	33	Sufficient	sufficient	JJ
cord-316525-uadfehr6	104	34	nucleotide	nucleotide	JJ
cord-316525-uadfehr6	104	35	identity	identity	NN
cord-316525-uadfehr6	104	36	between	between	IN
cord-316525-uadfehr6	104	37	these	these	DT
cord-316525-uadfehr6	104	38	genomes	genome	NNS
cord-316525-uadfehr6	104	39	is	be	VBZ
cord-316525-uadfehr6	104	40	essential	essential	JJ
cord-316525-uadfehr6	104	41	for	for	IN
cord-316525-uadfehr6	104	42	genome	genome	NN
cord-316525-uadfehr6	104	43	-	-	HYPH
cord-316525-uadfehr6	104	44	switching	switching	NN
cord-316525-uadfehr6	104	45	to	to	TO
cord-316525-uadfehr6	104	46	occur	occur	VB
cord-316525-uadfehr6	104	47	during	during	IN
cord-316525-uadfehr6	104	48	RNA	RNA	NNP
cord-316525-uadfehr6	104	49	replication	replication	NN
cord-316525-uadfehr6	104	50	;	;	,
cord-316525-uadfehr6	104	51	(	(	-LRB-
cord-316525-uadfehr6	104	52	3	3	LS
cord-316525-uadfehr6	104	53	)	)	-RRB-
cord-316525-uadfehr6	105	1	The	the	DT
cord-316525-uadfehr6	105	2	proteins	protein	NNS
cord-316525-uadfehr6	105	3	arising	arise	VBG
cord-316525-uadfehr6	105	4	from	from	IN
cord-316525-uadfehr6	105	5	recombination	recombination	NN
cord-316525-uadfehr6	105	6	must	must	MD
cord-316525-uadfehr6	105	7	be	be	VB
cord-316525-uadfehr6	105	8	functional	functional	JJ
cord-316525-uadfehr6	105	9	;	;	:
cord-316525-uadfehr6	105	10	(	(	-LRB-
cord-316525-uadfehr6	105	11	4	4	LS
cord-316525-uadfehr6	105	12	)	)	-RRB-
cord-316525-uadfehr6	106	1	The	the	DT
cord-316525-uadfehr6	106	2	recombinant	recombinant	JJ
cord-316525-uadfehr6	106	3	virus	virus	NN
cord-316525-uadfehr6	106	4	must	must	MD
cord-316525-uadfehr6	106	5	have	have	VB
cord-316525-uadfehr6	106	6	some	some	DT
cord-316525-uadfehr6	106	7	selective	selective	JJ
cord-316525-uadfehr6	106	8	advantage	advantage	NN
cord-316525-uadfehr6	106	9	for	for	IN
cord-316525-uadfehr6	106	10	its	-PRON-	PRP$
cord-316525-uadfehr6	106	11	survival	survival	NN
cord-316525-uadfehr6	106	12	.	.	.
cord-316525-uadfehr6	107	1	That	that	RB
cord-316525-uadfehr6	107	2	is	is	RB
cord-316525-uadfehr6	107	3	,	,	,
cord-316525-uadfehr6	107	4	the	the	DT
cord-316525-uadfehr6	107	5	recombination	recombination	NN
cord-316525-uadfehr6	107	6	that	that	WDT
cord-316525-uadfehr6	107	7	creates	create	VBZ
cord-316525-uadfehr6	107	8	a	a	DT
cord-316525-uadfehr6	107	9	successful	successful	JJ
cord-316525-uadfehr6	107	10	"	"	``
cord-316525-uadfehr6	107	11	new	new	JJ
cord-316525-uadfehr6	107	12	"	"	''
cord-316525-uadfehr6	107	13	coronavirus	coronavirus	NN
cord-316525-uadfehr6	107	14	is	be	VBZ
cord-316525-uadfehr6	107	15	probably	probably	RB
cord-316525-uadfehr6	107	16	a	a	DT
cord-316525-uadfehr6	107	17	rare	rare	JJ
cord-316525-uadfehr6	107	18	event	event	NN
cord-316525-uadfehr6	107	19	.	.	.
cord-316525-uadfehr6	108	1	So	so	RB
cord-316525-uadfehr6	108	2	,	,	,
cord-316525-uadfehr6	108	3	we	-PRON-	PRP
cord-316525-uadfehr6	108	4	must	must	MD
cord-316525-uadfehr6	108	5	stress	stress	VB
cord-316525-uadfehr6	108	6	that	that	IN
cord-316525-uadfehr6	108	7	the	the	DT
cord-316525-uadfehr6	108	8	potential	potential	JJ
cord-316525-uadfehr6	108	9	recombination	recombination	NN
cord-316525-uadfehr6	108	10	events	event	NNS
cord-316525-uadfehr6	108	11	in	in	IN
cord-316525-uadfehr6	108	12	SARS	SARS	NNP
cord-316525-uadfehr6	108	13	-	-	HYPH
cord-316525-uadfehr6	108	14	CoV	CoV	NNP
cord-316525-uadfehr6	108	15	,	,	,
cord-316525-uadfehr6	108	16	identified	identify	VBN
cord-316525-uadfehr6	108	17	in	in	IN
cord-316525-uadfehr6	108	18	the	the	DT
cord-316525-uadfehr6	108	19	present	present	JJ
cord-316525-uadfehr6	108	20	study	study	NN
cord-316525-uadfehr6	108	21	,	,	,
cord-316525-uadfehr6	108	22	are	be	VBP
cord-316525-uadfehr6	108	23	most	most	RBS
cord-316525-uadfehr6	108	24	likely	likely	JJ
cord-316525-uadfehr6	108	25	"	"	``
cord-316525-uadfehr6	108	26	old	old	JJ
cord-316525-uadfehr6	108	27	"	"	''
cord-316525-uadfehr6	108	28	events	event	NNS
cord-316525-uadfehr6	108	29	,	,	,
cord-316525-uadfehr6	108	30	which	which	WDT
cord-316525-uadfehr6	108	31	may	may	MD
cord-316525-uadfehr6	108	32	represent	represent	VB
cord-316525-uadfehr6	108	33	the	the	DT
cord-316525-uadfehr6	108	34	events	event	NNS
cord-316525-uadfehr6	108	35	that	that	WDT
cord-316525-uadfehr6	108	36	occurred	occur	VBD
cord-316525-uadfehr6	108	37	thousands	thousand	NNS
cord-316525-uadfehr6	108	38	of	of	IN
cord-316525-uadfehr6	108	39	years	year	NNS
cord-316525-uadfehr6	108	40	ago	ago	RB
cord-316525-uadfehr6	108	41	.	.	.
cord-316525-uadfehr6	109	1	Although	although	IN
cord-316525-uadfehr6	109	2	the	the	DT
cord-316525-uadfehr6	109	3	recent	recent	JJ
cord-316525-uadfehr6	109	4	findings	finding	NNS
cord-316525-uadfehr6	109	5	indicated	indicate	VBD
cord-316525-uadfehr6	109	6	that	that	IN
cord-316525-uadfehr6	109	7	SARS	SARS	NNP
cord-316525-uadfehr6	109	8	-	-	HYPH
cord-316525-uadfehr6	109	9	CoV	CoV	NNP
cord-316525-uadfehr6	109	10	did	do	VBD
cord-316525-uadfehr6	109	11	exist	exist	VB
cord-316525-uadfehr6	109	12	in	in	IN
cord-316525-uadfehr6	109	13	a	a	DT
cord-316525-uadfehr6	109	14	number	number	NN
cord-316525-uadfehr6	109	15	of	of	IN
cord-316525-uadfehr6	109	16	wild	wild	JJ
cord-316525-uadfehr6	109	17	animals	animal	NNS
cord-316525-uadfehr6	109	18	[	[	-LRB-
cord-316525-uadfehr6	109	19	7	7	CD
cord-316525-uadfehr6	109	20	]	]	-RRB-
cord-316525-uadfehr6	109	21	,	,	,
cord-316525-uadfehr6	109	22	we	-PRON-	PRP
cord-316525-uadfehr6	109	23	have	have	VBP
cord-316525-uadfehr6	109	24	not	not	RB
cord-316525-uadfehr6	109	25	yet	yet	RB
cord-316525-uadfehr6	109	26	determined	determine	VBN
cord-316525-uadfehr6	109	27	where	where	WRB
cord-316525-uadfehr6	109	28	these	these	DT
cord-316525-uadfehr6	109	29	SARS	SARS	NNP
cord-316525-uadfehr6	109	30	-	-	HYPH
cord-316525-uadfehr6	109	31	CoV	CoV	NNP
cord-316525-uadfehr6	109	32	-	-	HYPH
cord-316525-uadfehr6	109	33	like	like	JJ
cord-316525-uadfehr6	109	34	virus	virus	NN
cord-316525-uadfehr6	109	35	strains	strain	NNS
cord-316525-uadfehr6	109	36	come	come	VBP
cord-316525-uadfehr6	109	37	from	from	IN
cord-316525-uadfehr6	109	38	.	.	.
cord-316525-uadfehr6	110	1	Coronavirus	Coronavirus	NNP
cord-316525-uadfehr6	110	2	main	main	JJ
cord-316525-uadfehr6	110	3	proteinase	proteinase	NN
cord-316525-uadfehr6	110	4	(	(	-LRB-
cord-316525-uadfehr6	110	5	3CL	3CL	NNP
cord-316525-uadfehr6	110	6	pro	pro	JJ
cord-316525-uadfehr6	110	7	)	)	-RRB-
cord-316525-uadfehr6	110	8	structure	structure	NN
cord-316525-uadfehr6	110	9	:	:	:
cord-316525-uadfehr6	110	10	basis	basis	NN
cord-316525-uadfehr6	110	11	for	for	IN
cord-316525-uadfehr6	110	12	design	design	NN
cord-316525-uadfehr6	110	13	of	of	IN
cord-316525-uadfehr6	110	14	anti	anti	JJ
cord-316525-uadfehr6	110	15	-	-	JJ
cord-316525-uadfehr6	110	16	SARS	SARS	NNP
cord-316525-uadfehr6	110	17	drugs	drug	NNS
cord-316525-uadfehr6	110	18	Testing	test	VBG
cord-316525-uadfehr6	110	19	the	the	DT
cord-316525-uadfehr6	110	20	hypothesis	hypothesis	NN
cord-316525-uadfehr6	110	21	of	of	IN
cord-316525-uadfehr6	110	22	a	a	DT
cord-316525-uadfehr6	110	23	recombinant	recombinant	JJ
cord-316525-uadfehr6	110	24	origin	origin	NN
cord-316525-uadfehr6	110	25	of	of	IN
cord-316525-uadfehr6	110	26	human	human	JJ
cord-316525-uadfehr6	110	27	immunodeficiency	immunodeficiency	NN
cord-316525-uadfehr6	110	28	virus	virus	NN
cord-316525-uadfehr6	110	29	type	type	NN
cord-316525-uadfehr6	110	30	1	1	CD
cord-316525-uadfehr6	110	31	subtype	subtype	NN
cord-316525-uadfehr6	110	32	E	e	NN
cord-316525-uadfehr6	110	33	Full	full	JJ
cord-316525-uadfehr6	110	34	-	-	HYPH
cord-316525-uadfehr6	110	35	length	length	NN
cord-316525-uadfehr6	110	36	sequence	sequence	NN
cord-316525-uadfehr6	110	37	and	and	CC
cord-316525-uadfehr6	110	38	mosaic	mosaic	JJ
cord-316525-uadfehr6	110	39	structure	structure	NN
cord-316525-uadfehr6	110	40	of	of	IN
cord-316525-uadfehr6	110	41	a	a	DT
cord-316525-uadfehr6	110	42	human	human	JJ
cord-316525-uadfehr6	110	43	immunodeficiency	immunodeficiency	NN
cord-316525-uadfehr6	110	44	virus	virus	NN
cord-316525-uadfehr6	110	45	type	type	NN
cord-316525-uadfehr6	110	46	1	1	CD
cord-316525-uadfehr6	110	47	isolate	isolate	VBP
cord-316525-uadfehr6	110	48	from	from	IN
cord-316525-uadfehr6	110	49	Thailand	Thailand	NNP
cord-316525-uadfehr6	110	50	Evolution	Evolution	NNP
cord-316525-uadfehr6	110	51	of	of	IN
cord-316525-uadfehr6	110	52	avian	avian	JJ
cord-316525-uadfehr6	110	53	coronavirus	coronavirus	NN
cord-316525-uadfehr6	110	54	IBV	IBV	NNP
cord-316525-uadfehr6	110	55	:	:	:
cord-316525-uadfehr6	110	56	sequence	sequence	NN
cord-316525-uadfehr6	110	57	of	of	IN
cord-316525-uadfehr6	110	58	the	the	DT
cord-316525-uadfehr6	110	59	matrix	matrix	NN
cord-316525-uadfehr6	110	60	glycoprotein	glycoprotein	NN
cord-316525-uadfehr6	110	61	gene	gene	NN
cord-316525-uadfehr6	110	62	and	and	CC
cord-316525-uadfehr6	110	63	intergenic	intergenic	JJ
cord-316525-uadfehr6	110	64	region	region	NN
cord-316525-uadfehr6	110	65	of	of	IN
cord-316525-uadfehr6	110	66	several	several	JJ
cord-316525-uadfehr6	110	67	serotypes	serotype	NNS
cord-316525-uadfehr6	110	68	Infectious	infectious	JJ
cord-316525-uadfehr6	110	69	bronchitis	bronchitis	NN
cord-316525-uadfehr6	110	70	virus	virus	NN
cord-316525-uadfehr6	110	71	:	:	:
cord-316525-uadfehr6	110	72	evidence	evidence	NN
cord-316525-uadfehr6	110	73	for	for	IN
cord-316525-uadfehr6	110	74	recombination	recombination	NN
cord-316525-uadfehr6	110	75	within	within	IN
cord-316525-uadfehr6	110	76	the	the	DT
cord-316525-uadfehr6	110	77	Massachusetts	Massachusetts	NNP
cord-316525-uadfehr6	110	78	serotype	serotype	NN
cord-316525-uadfehr6	111	1	The	the	DT
cord-316525-uadfehr6	111	2	heterosexual	heterosexual	JJ
cord-316525-uadfehr6	111	3	human	human	JJ
cord-316525-uadfehr6	111	4	immunodeficiency	immunodeficiency	NN
cord-316525-uadfehr6	111	5	virus	virus	NN
cord-316525-uadfehr6	111	6	type	type	NN
cord-316525-uadfehr6	111	7	1	1	CD
cord-316525-uadfehr6	111	8	epidemic	epidemic	NN
cord-316525-uadfehr6	111	9	in	in	IN
cord-316525-uadfehr6	111	10	Thailand	Thailand	NNP
cord-316525-uadfehr6	111	11	is	be	VBZ
cord-316525-uadfehr6	111	12	caused	cause	VBN
cord-316525-uadfehr6	111	13	by	by	IN
cord-316525-uadfehr6	111	14	an	an	DT
cord-316525-uadfehr6	111	15	intersubtype	intersubtype	NN
cord-316525-uadfehr6	111	16	(	(	-LRB-
cord-316525-uadfehr6	111	17	A	a	NN
cord-316525-uadfehr6	111	18	/	/	SYM
cord-316525-uadfehr6	111	19	E	e	NN
cord-316525-uadfehr6	111	20	)	)	-RRB-
cord-316525-uadfehr6	111	21	recombinant	recombinant	NN
cord-316525-uadfehr6	111	22	of	of	IN
cord-316525-uadfehr6	111	23	African	african	JJ
cord-316525-uadfehr6	111	24	origin	origin	NN
cord-316525-uadfehr6	111	25	Isolation	isolation	NN
cord-316525-uadfehr6	111	26	and	and	CC
cord-316525-uadfehr6	111	27	characterization	characterization	NN
cord-316525-uadfehr6	111	28	of	of	IN
cord-316525-uadfehr6	111	29	viruses	virus	NNS
cord-316525-uadfehr6	111	30	related	relate	VBN
cord-316525-uadfehr6	111	31	to	to	IN
cord-316525-uadfehr6	111	32	the	the	DT
cord-316525-uadfehr6	111	33	SARS	SARS	NNP
cord-316525-uadfehr6	111	34	coronavirus	coronavirus	NN
cord-316525-uadfehr6	111	35	from	from	IN
cord-316525-uadfehr6	111	36	animals	animal	NNS
cord-316525-uadfehr6	111	37	in	in	IN
cord-316525-uadfehr6	111	38	southern	southern	JJ
cord-316525-uadfehr6	111	39	China	China	NNP
cord-316525-uadfehr6	111	40	Detecting	detect	VBG
cord-316525-uadfehr6	111	41	recombination	recombination	NN
cord-316525-uadfehr6	111	42	with	with	IN
cord-316525-uadfehr6	111	43	MCMC	MCMC	NNP
cord-316525-uadfehr6	111	44	Probabilistic	Probabilistic	NNP
cord-316525-uadfehr6	111	45	divergence	divergence	NN
cord-316525-uadfehr6	111	46	measures	measure	NNS
cord-316525-uadfehr6	111	47	for	for	IN
cord-316525-uadfehr6	111	48	detecting	detect	VBG
cord-316525-uadfehr6	111	49	interspecies	interspecie	NNS
cord-316525-uadfehr6	111	50	recombination	recombination	NN
cord-316525-uadfehr6	112	1	A	a	DT
cord-316525-uadfehr6	112	2	novel	novel	JJ
cord-316525-uadfehr6	112	3	variant	variant	NN
cord-316525-uadfehr6	112	4	of	of	IN
cord-316525-uadfehr6	112	5	avian	avian	JJ
cord-316525-uadfehr6	112	6	infectious	infectious	JJ
cord-316525-uadfehr6	112	7	bronchitis	bronchitis	NN
cord-316525-uadfehr6	112	8	virus	virus	NN
cord-316525-uadfehr6	112	9	resulting	result	VBG
cord-316525-uadfehr6	112	10	from	from	IN
cord-316525-uadfehr6	112	11	recombination	recombination	NN
cord-316525-uadfehr6	112	12	among	among	IN
cord-316525-uadfehr6	112	13	three	three	CD
cord-316525-uadfehr6	112	14	different	different	JJ
cord-316525-uadfehr6	112	15	strains	strain	NNS
cord-316525-uadfehr6	112	16	Experimental	experimental	JJ
cord-316525-uadfehr6	112	17	evidence	evidence	NN
cord-316525-uadfehr6	112	18	of	of	IN
cord-316525-uadfehr6	112	19	recombination	recombination	NN
cord-316525-uadfehr6	112	20	in	in	IN
cord-316525-uadfehr6	112	21	coronavirus	coronavirus	NN
cord-316525-uadfehr6	112	22	infectious	infectious	JJ
cord-316525-uadfehr6	112	23	bronchitis	bronchitis	NN
cord-316525-uadfehr6	112	24	virus	virus	NN
cord-316525-uadfehr6	112	25	A	a	DT
cord-316525-uadfehr6	112	26	novel	novel	JJ
cord-316525-uadfehr6	112	27	coronavirus	coronavirus	NN
cord-316525-uadfehr6	112	28	associated	associate	VBN
cord-316525-uadfehr6	112	29	with	with	IN
cord-316525-uadfehr6	112	30	severe	severe	JJ
cord-316525-uadfehr6	112	31	acute	acute	JJ
cord-316525-uadfehr6	112	32	respiratory	respiratory	JJ
cord-316525-uadfehr6	112	33	syndrome	syndrome	NN
cord-316525-uadfehr6	112	34	RNA	RNA	NNP
cord-316525-uadfehr6	112	35	recombination	recombination	NN
cord-316525-uadfehr6	112	36	in	in	IN
cord-316525-uadfehr6	112	37	animal	animal	NN
cord-316525-uadfehr6	112	38	and	and	CC
cord-316525-uadfehr6	112	39	plant	plant	NN
cord-316525-uadfehr6	112	40	viruses	virus	NNS
cord-316525-uadfehr6	112	41	Recombination	recombination	VBP
cord-316525-uadfehr6	112	42	in	in	IN
cord-316525-uadfehr6	112	43	large	large	JJ
cord-316525-uadfehr6	112	44	RNA	RNA	NNP
cord-316525-uadfehr6	112	45	viruses	virus	NNS
cord-316525-uadfehr6	112	46	:	:	:
cord-316525-uadfehr6	112	47	coronaviruses	coronaviruses	NNP
cord-316525-uadfehr6	112	48	Transmission	Transmission	NNP
cord-316525-uadfehr6	112	49	dynamics	dynamic	NNS
cord-316525-uadfehr6	112	50	and	and	CC
cord-316525-uadfehr6	112	51	control	control	NN
cord-316525-uadfehr6	112	52	of	of	IN
cord-316525-uadfehr6	112	53	severe	severe	JJ
cord-316525-uadfehr6	112	54	acute	acute	JJ
cord-316525-uadfehr6	112	55	respiratory	respiratory	JJ
cord-316525-uadfehr6	112	56	syndrome	syndrome	NN
cord-316525-uadfehr6	112	57	High	high	JJ
cord-316525-uadfehr6	112	58	-	-	HYPH
cord-316525-uadfehr6	112	59	frequency	frequency	NN
cord-316525-uadfehr6	112	60	RNA	RNA	NNP
cord-316525-uadfehr6	112	61	recombination	recombination	NN
cord-316525-uadfehr6	112	62	of	of	IN
cord-316525-uadfehr6	112	63	murine	murine	JJ
cord-316525-uadfehr6	112	64	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	113	1	The	the	DT
cord-316525-uadfehr6	113	2	genome	genome	NN
cord-316525-uadfehr6	113	3	sequence	sequence	NN
cord-316525-uadfehr6	113	4	of	of	IN
cord-316525-uadfehr6	113	5	the	the	DT
cord-316525-uadfehr6	113	6	SARSassociated	sarsassociated	JJ
cord-316525-uadfehr6	113	7	coronavirus	coronavirus	NN
cord-316525-uadfehr6	113	8	RDP	rdp	NN
cord-316525-uadfehr6	113	9	:	:	:
cord-316525-uadfehr6	113	10	detection	detection	NN
cord-316525-uadfehr6	113	11	of	of	IN
cord-316525-uadfehr6	113	12	recombination	recombination	NN
cord-316525-uadfehr6	113	13	amongst	amongst	IN
cord-316525-uadfehr6	113	14	aligned	align	VBN
cord-316525-uadfehr6	113	15	sequences	sequence	NNS
cord-316525-uadfehr6	113	16	Analyzing	analyze	VBG
cord-316525-uadfehr6	113	17	the	the	DT
cord-316525-uadfehr6	113	18	mosaic	mosaic	JJ
cord-316525-uadfehr6	113	19	structure	structure	NN
cord-316525-uadfehr6	113	20	of	of	IN
cord-316525-uadfehr6	113	21	genes	gene	NNS
cord-316525-uadfehr6	114	1	A	a	DT
cord-316525-uadfehr6	114	2	graphical	graphical	JJ
cord-316525-uadfehr6	114	3	method	method	NN
cord-316525-uadfehr6	114	4	for	for	IN
cord-316525-uadfehr6	114	5	detecting	detect	VBG
cord-316525-uadfehr6	114	6	recombination	recombination	NN
cord-316525-uadfehr6	114	7	in	in	IN
cord-316525-uadfehr6	114	8	phylogenetic	phylogenetic	JJ
cord-316525-uadfehr6	114	9	data	datum	NNS
cord-316525-uadfehr6	114	10	sets	set	VBZ
cord-316525-uadfehr6	114	11	Recombination	Recombination	NNP
cord-316525-uadfehr6	114	12	in	in	IN
cord-316525-uadfehr6	114	13	the	the	DT
cord-316525-uadfehr6	114	14	ompA	ompa	JJ
cord-316525-uadfehr6	114	15	gene	gene	NN
cord-316525-uadfehr6	114	16	but	but	CC
cord-316525-uadfehr6	114	17	not	not	RB
cord-316525-uadfehr6	114	18	the	the	DT
cord-316525-uadfehr6	114	19	omcB	omcb	CD
cord-316525-uadfehr6	114	20	gene	gene	NN
cord-316525-uadfehr6	114	21	of	of	IN
cord-316525-uadfehr6	114	22	Chlamydia	Chlamydia	NNP
cord-316525-uadfehr6	114	23	contributes	contribute	VBZ
cord-316525-uadfehr6	114	24	to	to	IN
cord-316525-uadfehr6	114	25	serovar	serovar	NN
cord-316525-uadfehr6	114	26	-	-	HYPH
cord-316525-uadfehr6	114	27	specific	specific	JJ
cord-316525-uadfehr6	114	28	differences	difference	NNS
cord-316525-uadfehr6	114	29	in	in	IN
cord-316525-uadfehr6	114	30	tissue	tissue	NN
cord-316525-uadfehr6	114	31	tropism	tropism	NN
cord-316525-uadfehr6	114	32	,	,	,
cord-316525-uadfehr6	114	33	immune	immune	JJ
cord-316525-uadfehr6	114	34	surveillance	surveillance	NN
cord-316525-uadfehr6	114	35	,	,	,
cord-316525-uadfehr6	114	36	and	and	CC
cord-316525-uadfehr6	114	37	persistence	persistence	NN
cord-316525-uadfehr6	114	38	of	of	IN
cord-316525-uadfehr6	114	39	the	the	DT
cord-316525-uadfehr6	114	40	organism	organism	NN
cord-316525-uadfehr6	115	1	A	a	DT
cord-316525-uadfehr6	115	2	double	double	JJ
cord-316525-uadfehr6	115	3	epidemic	epidemic	NN
cord-316525-uadfehr6	115	4	model	model	NN
cord-316525-uadfehr6	115	5	for	for	IN
cord-316525-uadfehr6	115	6	the	the	DT
cord-316525-uadfehr6	115	7	SARS	SARS	NNP
cord-316525-uadfehr6	115	8	propagation	propagation	NN
cord-316525-uadfehr6	115	9	Evaluation	Evaluation	NNP
cord-316525-uadfehr6	115	10	of	of	IN
cord-316525-uadfehr6	115	11	methods	method	NNS
cord-316525-uadfehr6	115	12	for	for	IN
cord-316525-uadfehr6	115	13	detecting	detect	VBG
cord-316525-uadfehr6	115	14	recombination	recombination	NN
cord-316525-uadfehr6	115	15	from	from	IN
cord-316525-uadfehr6	115	16	DNA	dna	NN
cord-316525-uadfehr6	115	17	sequences	sequence	NNS
cord-316525-uadfehr6	115	18	:	:	:
cord-316525-uadfehr6	115	19	Empirical	empirical	JJ
cord-316525-uadfehr6	115	20	data	datum	NNS
cord-316525-uadfehr6	115	21	Evaluation	Evaluation	NNP
cord-316525-uadfehr6	115	22	of	of	IN
cord-316525-uadfehr6	115	23	methods	method	NNS
cord-316525-uadfehr6	115	24	for	for	IN
cord-316525-uadfehr6	115	25	detecting	detect	VBG
cord-316525-uadfehr6	115	26	recombination	recombination	NN
cord-316525-uadfehr6	115	27	from	from	IN
cord-316525-uadfehr6	115	28	DNA	dna	NN
cord-316525-uadfehr6	115	29	sequences	sequence	NNS
cord-316525-uadfehr6	115	30	:	:	:
cord-316525-uadfehr6	116	1	Computer	computer	NN
cord-316525-uadfehr6	116	2	simulations	simulation	NNS
cord-316525-uadfehr6	116	3	Characterization	characterization	NN
cord-316525-uadfehr6	116	4	of	of	IN
cord-316525-uadfehr6	116	5	a	a	DT
cord-316525-uadfehr6	116	6	novel	novel	JJ
cord-316525-uadfehr6	116	7	coronavirus	coronavirus	NN
cord-316525-uadfehr6	116	8	associated	associate	VBN
cord-316525-uadfehr6	116	9	with	with	IN
cord-316525-uadfehr6	116	10	severe	severe	JJ
cord-316525-uadfehr6	116	11	acute	acute	JJ
cord-316525-uadfehr6	116	12	respiratory	respiratory	JJ
cord-316525-uadfehr6	116	13	syndrome	syndrome	NN
cord-316525-uadfehr6	116	14	Identification	identification	NN
cord-316525-uadfehr6	116	15	of	of	IN
cord-316525-uadfehr6	116	16	breakpoints	breakpoint	NNS
cord-316525-uadfehr6	116	17	in	in	IN
cord-316525-uadfehr6	116	18	intergenotypic	intergenotypic	JJ
cord-316525-uadfehr6	116	19	recombinants	recombinant	NNS
cord-316525-uadfehr6	116	20	of	of	IN
cord-316525-uadfehr6	116	21	HIV	HIV	NNP
cord-316525-uadfehr6	116	22	type	type	NN
cord-316525-uadfehr6	116	23	1	1	CD
cord-316525-uadfehr6	116	24	by	by	IN
cord-316525-uadfehr6	116	25	Bootscanning	Bootscanning	NNP
cord-316525-uadfehr6	116	26	A	a	DT
cord-316525-uadfehr6	116	27	new	new	JJ
cord-316525-uadfehr6	116	28	model	model	NN
cord-316525-uadfehr6	116	29	for	for	IN
cord-316525-uadfehr6	116	30	coronavirus	coronavirus	NN
cord-316525-uadfehr6	116	31	transcription	transcription	NN
cord-316525-uadfehr6	116	32	Statistical	statistical	JJ
cord-316525-uadfehr6	116	33	tests	test	NNS
cord-316525-uadfehr6	116	34	for	for	IN
cord-316525-uadfehr6	116	35	detecting	detect	VBG
cord-316525-uadfehr6	116	36	gene	gene	NN
cord-316525-uadfehr6	116	37	conversion	conversion	NN
cord-316525-uadfehr6	116	38	Unique	Unique	NNP
cord-316525-uadfehr6	116	39	and	and	CC
cord-316525-uadfehr6	116	40	conserved	conserve	VBN
cord-316525-uadfehr6	116	41	features	feature	NNS
cord-316525-uadfehr6	116	42	of	of	IN
cord-316525-uadfehr6	116	43	genome	genome	NN
cord-316525-uadfehr6	116	44	and	and	CC
cord-316525-uadfehr6	116	45	proteome	proteome	NN
cord-316525-uadfehr6	116	46	of	of	IN
cord-316525-uadfehr6	116	47	SARS	SARS	NNP
cord-316525-uadfehr6	116	48	-	-	HYPH
cord-316525-uadfehr6	116	49	coronavirus	coronavirus	NN
cord-316525-uadfehr6	116	50	,	,	,
cord-316525-uadfehr6	116	51	an	an	DT
cord-316525-uadfehr6	116	52	early	early	JJ
cord-316525-uadfehr6	116	53	split	split	NN
cord-316525-uadfehr6	116	54	-	-	HYPH
cord-316525-uadfehr6	116	55	off	off	NN
cord-316525-uadfehr6	116	56	from	from	IN
cord-316525-uadfehr6	116	57	the	the	DT
cord-316525-uadfehr6	116	58	coronavirus	coronavirus	NN
cord-316525-uadfehr6	116	59	group	group	NN
cord-316525-uadfehr6	116	60	2	2	CD
cord-316525-uadfehr6	116	61	lineage	lineage	NN
cord-316525-uadfehr6	116	62	Comparison	comparison	NN
cord-316525-uadfehr6	116	63	of	of	IN
cord-316525-uadfehr6	116	64	the	the	DT
cord-316525-uadfehr6	116	65	genome	genome	NN
cord-316525-uadfehr6	116	66	organization	organization	NN
cord-316525-uadfehr6	116	67	of	of	IN
cord-316525-uadfehr6	116	68	toro	toro	NNP
cord-316525-uadfehr6	116	69	-	-	HYPH
cord-316525-uadfehr6	116	70	and	and	CC
cord-316525-uadfehr6	116	71	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	116	72	:	:	:
cord-316525-uadfehr6	116	73	evidence	evidence	NN
cord-316525-uadfehr6	116	74	for	for	IN
cord-316525-uadfehr6	116	75	two	two	CD
cord-316525-uadfehr6	116	76	nonhomologous	nonhomologous	NNP
cord-316525-uadfehr6	116	77	RNA	RNA	NNP
cord-316525-uadfehr6	116	78	recombination	recombination	NN
cord-316525-uadfehr6	116	79	events	event	NNS
cord-316525-uadfehr6	116	80	during	during	IN
cord-316525-uadfehr6	116	81	Berne	Berne	NNP
cord-316525-uadfehr6	116	82	virus	virus	NN
cord-316525-uadfehr6	116	83	evolution	evolution	NN
cord-316525-uadfehr6	116	84	Transcription	Transcription	NNP
cord-316525-uadfehr6	116	85	strategy	strategy	NN
cord-316525-uadfehr6	116	86	of	of	IN
cord-316525-uadfehr6	116	87	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	116	88	:	:	:
cord-316525-uadfehr6	117	1	fusion	fusion	NN
cord-316525-uadfehr6	117	2	of	of	IN
cord-316525-uadfehr6	117	3	non	non	JJ
cord-316525-uadfehr6	117	4	-	-	JJ
cord-316525-uadfehr6	117	5	contiguous	contiguous	JJ
cord-316525-uadfehr6	117	6	sequences	sequence	NNS
cord-316525-uadfehr6	117	7	during	during	IN
cord-316525-uadfehr6	117	8	mRNA	mRNA	NNP
cord-316525-uadfehr6	117	9	synthesis	synthesis	NN
cord-316525-uadfehr6	117	10	Mosaic	Mosaic	NNP
cord-316525-uadfehr6	117	11	evolution	evolution	NN
cord-316525-uadfehr6	117	12	of	of	IN
cord-316525-uadfehr6	117	13	the	the	DT
cord-316525-uadfehr6	117	14	severe	severe	JJ
cord-316525-uadfehr6	117	15	acute	acute	JJ
cord-316525-uadfehr6	117	16	respiratory	respiratory	JJ
cord-316525-uadfehr6	117	17	syndrome	syndrome	NN
cord-316525-uadfehr6	117	18	coronavirus	coronavirus	NN
cord-316525-uadfehr6	117	19	CLUSTAL	CLUSTAL	NNP
cord-316525-uadfehr6	117	20	W	W	NNP
cord-316525-uadfehr6	117	21	:	:	:
cord-316525-uadfehr6	117	22	improving	improve	VBG
cord-316525-uadfehr6	117	23	the	the	DT
cord-316525-uadfehr6	117	24	sensitivity	sensitivity	NN
cord-316525-uadfehr6	117	25	of	of	IN
cord-316525-uadfehr6	117	26	progressive	progressive	JJ
cord-316525-uadfehr6	117	27	multiple	multiple	JJ
cord-316525-uadfehr6	117	28	sequence	sequence	NN
cord-316525-uadfehr6	117	29	alignment	alignment	NN
cord-316525-uadfehr6	117	30	through	through	IN
cord-316525-uadfehr6	117	31	sequence	sequence	NN
cord-316525-uadfehr6	117	32	weighting	weighting	NN
cord-316525-uadfehr6	117	33	,	,	,
cord-316525-uadfehr6	117	34	positions	position	NNS
cord-316525-uadfehr6	117	35	-	-	HYPH
cord-316525-uadfehr6	117	36	specific	specific	JJ
cord-316525-uadfehr6	117	37	gap	gap	NN
cord-316525-uadfehr6	117	38	penalties	penalty	NNS
cord-316525-uadfehr6	117	39	and	and	CC
cord-316525-uadfehr6	117	40	weight	weight	NN
cord-316525-uadfehr6	117	41	matrix	matrix	NN
cord-316525-uadfehr6	117	42	choice	choice	NN
cord-316525-uadfehr6	117	43	Regulation	regulation	NN
cord-316525-uadfehr6	117	44	of	of	IN
cord-316525-uadfehr6	117	45	transcription	transcription	NN
cord-316525-uadfehr6	117	46	of	of	IN
cord-316525-uadfehr6	117	47	coronaviruses	coronaviruse	NNS
cord-316525-uadfehr6	117	48	Recombination	Recombination	NNP
cord-316525-uadfehr6	117	49	in	in	IN
cord-316525-uadfehr6	117	50	SARS	SARS	NNP
cord-316525-uadfehr6	117	51	-	-	HYPH
cord-316525-uadfehr6	117	52	CoV	CoV	NNP
cord-316525-uadfehr6	117	53	Flood	Flood	NNP
cord-316525-uadfehr6	117	54	of	of	IN
cord-316525-uadfehr6	117	55	sequence	sequence	NN
cord-316525-uadfehr6	117	56	data	data	NN
cord-316525-uadfehr6	117	57	yields	yield	VBZ
cord-316525-uadfehr6	117	58	clues	clue	NNS
cord-316525-uadfehr6	117	59	but	but	CC
cord-316525-uadfehr6	117	60	few	few	JJ
cord-316525-uadfehr6	117	61	answers	answer	NNS
cord-316525-uadfehr6	117	62	Evidence	evidence	NN
cord-316525-uadfehr6	117	63	of	of	IN
cord-316525-uadfehr6	117	64	natural	natural	JJ
cord-316525-uadfehr6	117	65	recombination	recombination	NN
cord-316525-uadfehr6	117	66	within	within	IN
cord-316525-uadfehr6	117	67	the	the	DT
cord-316525-uadfehr6	117	68	S1	S1	NNP
cord-316525-uadfehr6	117	69	gene	gene	NN
cord-316525-uadfehr6	117	70	of	of	IN
cord-316525-uadfehr6	117	71	infectious	infectious	JJ
cord-316525-uadfehr6	117	72	bronchitis	bronchitis	NN
cord-316525-uadfehr6	117	73	virus	virus	NN
cord-316525-uadfehr6	117	74	Evolutionary	evolutionary	JJ
cord-316525-uadfehr6	117	75	implications	implication	NNS
cord-316525-uadfehr6	117	76	of	of	IN
cord-316525-uadfehr6	117	77	genetic	genetic	JJ
cord-316525-uadfehr6	117	78	variations	variation	NNS
cord-316525-uadfehr6	117	79	in	in	IN
cord-316525-uadfehr6	117	80	the	the	DT
cord-316525-uadfehr6	117	81	S1	S1	NNP
cord-316525-uadfehr6	117	82	gene	gene	NN
cord-316525-uadfehr6	117	83	of	of	IN
cord-316525-uadfehr6	117	84	infectious	infectious	JJ
cord-316525-uadfehr6	117	85	bronchitis	bronchitis	NN
cord-316525-uadfehr6	117	86	virus	virus	NN
cord-316525-uadfehr6	117	87	Experimental	experimental	JJ
cord-316525-uadfehr6	117	88	confirmation	confirmation	NN
cord-316525-uadfehr6	117	89	of	of	IN
cord-316525-uadfehr6	117	90	recombination	recombination	NN
cord-316525-uadfehr6	117	91	upstream	upstream	RB
cord-316525-uadfehr6	117	92	of	of	IN
cord-316525-uadfehr6	117	93	the	the	DT
cord-316525-uadfehr6	117	94	S1	S1	NNP
cord-316525-uadfehr6	117	95	hypervariable	hypervariable	NN
cord-316525-uadfehr6	117	96	region	region	NN
cord-316525-uadfehr6	117	97	of	of	IN
cord-316525-uadfehr6	117	98	infectious	infectious	JJ
cord-316525-uadfehr6	117	99	bronchitis	bronchitis	NN
cord-316525-uadfehr6	117	100	virus	virus	NN
cord-316525-uadfehr6	117	101	Widespread	widespread	JJ
cord-316525-uadfehr6	117	102	intra	intra	JJ
cord-316525-uadfehr6	117	103	-	-	JJ
cord-316525-uadfehr6	117	104	serotype	serotype	JJ
cord-316525-uadfehr6	117	105	recombination	recombination	NN
cord-316525-uadfehr6	117	106	in	in	IN
cord-316525-uadfehr6	117	107	natural	natural	JJ
cord-316525-uadfehr6	117	108	populations	population	NNS
cord-316525-uadfehr6	117	109	of	of	IN
cord-316525-uadfehr6	117	110	dengue	dengue	NN
cord-316525-uadfehr6	117	111	virus	virus	NN
cord-316525-uadfehr6	118	1	Author	author	NN
cord-316525-uadfehr6	118	2	's	's	POS
cord-316525-uadfehr6	118	3	address	address	NN
cord-316525-uadfehr6	118	4	:	:	:
cord-316525-uadfehr6	118	5	Dr	Dr	NNP
cord-316525-uadfehr6	119	1	We	-PRON-	PRP
cord-316525-uadfehr6	119	2	wish	wish	VBP
cord-316525-uadfehr6	119	3	to	to	TO
cord-316525-uadfehr6	119	4	thank	thank	VB
cord-316525-uadfehr6	119	5	the	the	DT
cord-316525-uadfehr6	119	6	Hong	Hong	NNP
cord-316525-uadfehr6	119	7	Kong	Kong	NNP
cord-316525-uadfehr6	119	8	Innovation	Innovation	NNP
cord-316525-uadfehr6	119	9	and	and	CC
cord-316525-uadfehr6	119	10	Technology	Technology	NNP
cord-316525-uadfehr6	119	11	Fund	Fund	NNP
cord-316525-uadfehr6	119	12	for	for	IN
cord-316525-uadfehr6	119	13	supporting	support	VBG
cord-316525-uadfehr6	119	14	the	the	DT
cord-316525-uadfehr6	119	15	present	present	JJ
cord-316525-uadfehr6	119	16	research	research	NN
cord-316525-uadfehr6	119	17	.	.	.
cord-316525-uadfehr6	120	1	Ending	end	VBG
cord-316525-uadfehr6	120	2	in	in	IN
cord-316525-uadfehr6	120	3	Length	length	NN
cord-316525-uadfehr6	120	4	 	 	_SP
cord-316525-uadfehr6	120	5	Identity	Identity	NNP
cord-316525-uadfehr6	120	6	 	 	_SP
cord-316525-uadfehr6	120	7	Match	Match	NNP
cord-316525-uadfehr6	120	8	percent	percent	VB
cord-316525-uadfehr6	120	9	 	 	_SP
cord-316525-uadfehr6	121	1	Source	source	NN
cord-316525-uadfehr6	121	2	 	 	_SP
cord-316525-uadfehr6	121	3	SARS	SARS	NNP
cord-316525-uadfehr6	121	4	 	 	_SP
cord-316525-uadfehr6	122	1	SARS	SARS	NNP
cord-316525-uadfehr6	122	2	 	 	_SP
cord-316525-uadfehr6	122	3	(	(	-LRB-
cord-316525-uadfehr6	122	4	%	%	NN
cord-316525-uadfehr6	122	5	)	)	-RRB-
cord-316525-uadfehr6	122	6	  	  	_SP
cord-316525-uadfehr6	122	7	10063	10063	CD
cord-316525-uadfehr6	122	8	 	 	_SP
cord-316525-uadfehr6	123	1	10109	10109	CD
cord-316525-uadfehr6	123	2	 	 	_SP
cord-316525-uadfehr6	124	1	47	47	CD
cord-316525-uadfehr6	124	2	 	 	_SP
cord-316525-uadfehr6	125	1	41	41	CD
cord-316525-uadfehr6	125	2	 	 	_SP
cord-316525-uadfehr6	126	1	88	88	CD
cord-316525-uadfehr6	126	2	 	 	_SP
cord-316525-uadfehr6	126	3	MHV	MHV	NNP
cord-316525-uadfehr6	126	4	 	 	_SP
cord-316525-uadfehr6	127	1	10609	10609	CD
cord-316525-uadfehr6	127	2	 	 	_SP
cord-316525-uadfehr6	128	1	10641	10641	CD
cord-316525-uadfehr6	128	2	 	 	_SP
cord-316525-uadfehr6	129	1	33	33	CD
cord-316525-uadfehr6	129	2	 	 	_SP
cord-316525-uadfehr6	129	3	30	30	CD
cord-316525-uadfehr6	129	4	 	 	_SP
cord-316525-uadfehr6	129	5	91	91	CD
cord-316525-uadfehr6	129	6	 	 	_SP
cord-316525-uadfehr6	129	7	TGEV	TGEV	NNP
cord-316525-uadfehr6	129	8	 	 	_SP
cord-316525-uadfehr6	130	1	12821	12821	CD
cord-316525-uadfehr6	130	2	 	 	_SP
cord-316525-uadfehr6	131	1	12854	12854	CD
cord-316525-uadfehr6	131	2	 	 	_SP
cord-316525-uadfehr6	132	1	34	34	CD
cord-316525-uadfehr6	132	2	 	 	_SP
cord-316525-uadfehr6	132	3	31	31	CD
cord-316525-uadfehr6	132	4	 	 	_SP
cord-316525-uadfehr6	132	5	92	92	CD
cord-316525-uadfehr6	132	6	 	 	_SP
cord-316525-uadfehr6	133	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	133	2	 	 	_SP
cord-316525-uadfehr6	133	3	13844	13844	CD
cord-316525-uadfehr6	133	4	 	 	_SP
cord-316525-uadfehr6	134	1	13879	13879	CD
cord-316525-uadfehr6	134	2	 	 	_SP
cord-316525-uadfehr6	135	1	36	36	CD
cord-316525-uadfehr6	135	2	 	 	_SP
cord-316525-uadfehr6	135	3	32	32	CD
cord-316525-uadfehr6	135	4	 	 	_SP
cord-316525-uadfehr6	136	1	89	89	CD
cord-316525-uadfehr6	136	2	 	 	_SP
cord-316525-uadfehr6	137	1	BCoV	BCoV	NNP
cord-316525-uadfehr6	137	2	 	 	_SP
cord-316525-uadfehr6	137	3	13845	13845	CD
cord-316525-uadfehr6	137	4	 	 	_SP
cord-316525-uadfehr6	138	1	13879	13879	CD
cord-316525-uadfehr6	138	2	 	 	_SP
cord-316525-uadfehr6	139	1	35	35	CD
cord-316525-uadfehr6	139	2	IBV	IBV	NNP
cord-316525-uadfehr6	139	3	 	 	_SP
cord-316525-uadfehr6	140	1	14808	14808	CD
cord-316525-uadfehr6	140	2	 	 	_SP
cord-316525-uadfehr6	141	1	14835	14835	CD
cord-316525-uadfehr6	141	2	 	 	_SP
cord-316525-uadfehr6	142	1	28	28	CD
cord-316525-uadfehr6	142	2	 	 	_SP
cord-316525-uadfehr6	143	1	26	26	CD
cord-316525-uadfehr6	143	2	 	 	_SP
cord-316525-uadfehr6	144	1	93	93	CD
cord-316525-uadfehr6	144	2	 	 	_SP
cord-316525-uadfehr6	145	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	145	2	 	 	_SP
cord-316525-uadfehr6	146	1	14913	14913	CD
cord-316525-uadfehr6	146	2	 	 	_SP
cord-316525-uadfehr6	147	1	14947	14947	CD
cord-316525-uadfehr6	147	2	 	 	_SP
cord-316525-uadfehr6	148	1	35	35	CD
cord-316525-uadfehr6	148	2	 	 	_SP
cord-316525-uadfehr6	148	3	31	31	CD
cord-316525-uadfehr6	148	4	 	 	_SP
cord-316525-uadfehr6	148	5	89	89	CD
cord-316525-uadfehr6	148	6	 	 	_SP
cord-316525-uadfehr6	149	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	149	2	 	 	_SP
cord-316525-uadfehr6	150	1	14933	14933	CD
cord-316525-uadfehr6	150	2	 	 	_SP
cord-316525-uadfehr6	151	1	15070	15070	CD
cord-316525-uadfehr6	151	2	 	 	_SP
cord-316525-uadfehr6	152	1	138	138	CD
cord-316525-uadfehr6	152	2	 	 	_SP
cord-316525-uadfehr6	152	3	112	112	CD
cord-316525-uadfehr6	152	4	 	 	_SP
cord-316525-uadfehr6	153	1	82	82	CD
cord-316525-uadfehr6	153	2	 	 	_SP
cord-316525-uadfehr6	154	1	BCoV	BCoV	NNP
cord-316525-uadfehr6	154	2	 	 	_SP
cord-316525-uadfehr6	154	3	14982	14982	CD
cord-316525-uadfehr6	154	4	 	 	_SP
cord-316525-uadfehr6	155	1	15091	15091	CD
cord-316525-uadfehr6	155	2	 	 	_SP
cord-316525-uadfehr6	156	1	110	110	CD
cord-316525-uadfehr6	156	2	 	 	_SP
cord-316525-uadfehr6	157	1	89	89	CD
cord-316525-uadfehr6	157	2	 	 	_SP
cord-316525-uadfehr6	158	1	81	81	CD
cord-316525-uadfehr6	158	2	 	 	_SP
cord-316525-uadfehr6	158	3	IBV	IBV	NNP
cord-316525-uadfehr6	158	4	 	 	_SP
cord-316525-uadfehr6	158	5	14986	14986	CD
cord-316525-uadfehr6	158	6	 	 	_SP
cord-316525-uadfehr6	159	1	15055	15055	CD
cord-316525-uadfehr6	159	2	 	 	_SP
cord-316525-uadfehr6	160	1	70	70	CD
cord-316525-uadfehr6	160	2	 	 	_SP
cord-316525-uadfehr6	160	3	64	64	CD
cord-316525-uadfehr6	160	4	 	 	_SP
cord-316525-uadfehr6	160	5	92	92	CD
cord-316525-uadfehr6	160	6	 	 	_SP
cord-316525-uadfehr6	161	1	MHV	MHV	NNP
cord-316525-uadfehr6	161	2	 	 	_SP
cord-316525-uadfehr6	162	1	15062	15062	CD
cord-316525-uadfehr6	162	2	 	 	_SP
cord-316525-uadfehr6	163	1	15093	15093	CD
cord-316525-uadfehr6	163	2	 	 	_SP
cord-316525-uadfehr6	164	1	32	32	CD
cord-316525-uadfehr6	164	2	 	 	_SP
cord-316525-uadfehr6	165	1	29	29	CD
cord-316525-uadfehr6	165	2	 	 	_SP
cord-316525-uadfehr6	166	1	91	91	CD
cord-316525-uadfehr6	166	2	 	 	_SP
cord-316525-uadfehr6	167	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	167	2	 	 	_SP
cord-316525-uadfehr6	168	1	15123	15123	CD
cord-316525-uadfehr6	168	2	 	 	_SP
cord-316525-uadfehr6	169	1	15173	15173	CD
cord-316525-uadfehr6	169	2	 	 	_SP
cord-316525-uadfehr6	170	1	51	51	CD
cord-316525-uadfehr6	170	2	 	 	_SP
cord-316525-uadfehr6	171	1	43	43	CD
cord-316525-uadfehr6	171	2	 	 	_SP
cord-316525-uadfehr6	172	1	85	85	CD
cord-316525-uadfehr6	172	2	 	 	_SP
cord-316525-uadfehr6	173	1	TGEV	TGEV	NNP
cord-316525-uadfehr6	173	2	 	 	_SP
cord-316525-uadfehr6	174	1	15210	15210	CD
cord-316525-uadfehr6	174	2	 	 	_SP
cord-316525-uadfehr6	175	1	15232	15232	CD
cord-316525-uadfehr6	175	2	 	 	_SP
cord-316525-uadfehr6	176	1	23	23	CD
cord-316525-uadfehr6	176	2	 	 	_SP
cord-316525-uadfehr6	177	1	22	22	CD
cord-316525-uadfehr6	177	2	 	 	_SP
cord-316525-uadfehr6	177	3	96	96	CD
cord-316525-uadfehr6	177	4	 	 	_SP
cord-316525-uadfehr6	177	5	PEDV	PEDV	NNP
cord-316525-uadfehr6	177	6	 	 	_SP
cord-316525-uadfehr6	178	1	15210	15210	CD
cord-316525-uadfehr6	178	2	 	 	_SP
cord-316525-uadfehr6	179	1	15238	15238	CD
cord-316525-uadfehr6	179	2	 	 	_SP
cord-316525-uadfehr6	180	1	29	29	CD
cord-316525-uadfehr6	180	2	 	 	_SP
cord-316525-uadfehr6	181	1	27	27	CD
cord-316525-uadfehr6	181	2	 	 	_SP
cord-316525-uadfehr6	182	1	94	94	CD
cord-316525-uadfehr6	182	2	 	 	_SP
cord-316525-uadfehr6	183	1	BCoV	BCoV	NNP
cord-316525-uadfehr6	183	2	 	 	_SP
cord-316525-uadfehr6	184	1	15210	15210	CD
cord-316525-uadfehr6	184	2	 	 	_SP
cord-316525-uadfehr6	185	1	15253	15253	CD
cord-316525-uadfehr6	185	2	 	 	_SP
cord-316525-uadfehr6	186	1	44	44	CD
cord-316525-uadfehr6	186	2	 	 	_SP
cord-316525-uadfehr6	187	1	40	40	CD
cord-316525-uadfehr6	187	2	 	 	_SP
cord-316525-uadfehr6	187	3	91	91	CD
cord-316525-uadfehr6	187	4	 	 	_SP
cord-316525-uadfehr6	188	1	IBV	IBV	NNP
cord-316525-uadfehr6	188	2	 	 	_SP
cord-316525-uadfehr6	189	1	15417	15417	CD
cord-316525-uadfehr6	189	2	 	 	_SP
cord-316525-uadfehr6	190	1	15482	15482	CD
cord-316525-uadfehr6	190	2	 	 	_SP
cord-316525-uadfehr6	191	1	66	66	CD
cord-316525-uadfehr6	191	2	 	 	_SP
cord-316525-uadfehr6	192	1	57	57	CD
cord-316525-uadfehr6	192	2	 	 	_SP
cord-316525-uadfehr6	192	3	87	87	CD
cord-316525-uadfehr6	192	4	 	 	_SP
cord-316525-uadfehr6	193	1	BCoV	BCoV	NNP
cord-316525-uadfehr6	193	2	 	 	_SP
cord-316525-uadfehr6	194	1	15417	15417	CD
cord-316525-uadfehr6	194	2	 	 	_SP
cord-316525-uadfehr6	195	1	15457	15457	CD
cord-316525-uadfehr6	195	2	 	 	_SP
cord-316525-uadfehr6	196	1	41	41	CD
cord-316525-uadfehr6	196	2	 	 	_SP
cord-316525-uadfehr6	197	1	37	37	CD
cord-316525-uadfehr6	197	2	 	 	_SP
cord-316525-uadfehr6	197	3	91	91	CD
cord-316525-uadfehr6	197	4	 	 	_SP
cord-316525-uadfehr6	198	1	IBV	IBV	NNP
cord-316525-uadfehr6	198	2	 	 	_SP
cord-316525-uadfehr6	199	1	15420	15420	CD
cord-316525-uadfehr6	199	2	 	 	_SP
cord-316525-uadfehr6	200	1	15479	15479	CD
cord-316525-uadfehr6	200	2	 	 	_SP
cord-316525-uadfehr6	201	1	63	63	CD
cord-316525-uadfehr6	201	2	 	 	_SP
cord-316525-uadfehr6	202	1	55	55	CD
cord-316525-uadfehr6	202	2	 	 	_SP
cord-316525-uadfehr6	203	1	88	88	CD
cord-316525-uadfehr6	203	2	 	 	_SP
cord-316525-uadfehr6	204	1	MHV	MHV	NNP
cord-316525-uadfehr6	204	2	 	 	_SP
cord-316525-uadfehr6	205	1	15611	15611	CD
cord-316525-uadfehr6	205	2	 	 	_SP
cord-316525-uadfehr6	206	1	15682	15682	CD
cord-316525-uadfehr6	206	2	 	 	_SP
cord-316525-uadfehr6	207	1	72	72	CD
cord-316525-uadfehr6	207	2	 	 	_SP
cord-316525-uadfehr6	207	3	64	64	CD
cord-316525-uadfehr6	207	4	 	 	_SP
cord-316525-uadfehr6	207	5	89	89	CD
cord-316525-uadfehr6	207	6	 	 	_SP
cord-316525-uadfehr6	207	7	PEDV	PEDV	NNP
cord-316525-uadfehr6	207	8	 	 	_SP
cord-316525-uadfehr6	208	1	15624	15624	CD
cord-316525-uadfehr6	208	2	 	 	_SP
cord-316525-uadfehr6	209	1	15670	15670	CD
cord-316525-uadfehr6	209	2	 	 	_SP
cord-316525-uadfehr6	210	1	47	47	CD
cord-316525-uadfehr6	210	2	 	 	_SP
cord-316525-uadfehr6	211	1	42	42	CD
cord-316525-uadfehr6	211	2	 	 	_SP
cord-316525-uadfehr6	212	1	90	90	CD
cord-316525-uadfehr6	212	2	 	 	_SP
cord-316525-uadfehr6	213	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	213	2	 	 	_SP
cord-316525-uadfehr6	214	1	15633	15633	CD
cord-316525-uadfehr6	214	2	 	 	_SP
cord-316525-uadfehr6	215	1	15672	15672	CD
cord-316525-uadfehr6	215	2	 	 	_SP
cord-316525-uadfehr6	216	1	40	40	CD
cord-316525-uadfehr6	216	2	 	 	_SP
cord-316525-uadfehr6	216	3	35	35	CD
cord-316525-uadfehr6	216	4	 	 	_SP
cord-316525-uadfehr6	216	5	88	88	CD
cord-316525-uadfehr6	216	6	 	 	_SP
cord-316525-uadfehr6	217	1	TGEV	TGEV	NNP
cord-316525-uadfehr6	217	2	 	 	_SP
cord-316525-uadfehr6	218	1	15729	15729	CD
cord-316525-uadfehr6	218	2	 	 	_SP
cord-316525-uadfehr6	219	1	15770	15770	CD
cord-316525-uadfehr6	219	2	 	 	_SP
cord-316525-uadfehr6	220	1	42	42	CD
cord-316525-uadfehr6	220	2	 	 	_SP
cord-316525-uadfehr6	221	1	40	40	CD
cord-316525-uadfehr6	221	2	 	 	_SP
cord-316525-uadfehr6	222	1	96	96	CD
cord-316525-uadfehr6	222	2	 	 	_SP
cord-316525-uadfehr6	223	1	MHV	MHV	NNP
cord-316525-uadfehr6	223	2	 	 	_SP
cord-316525-uadfehr6	224	1	15765	15765	CD
cord-316525-uadfehr6	224	2	 	 	_SP
cord-316525-uadfehr6	225	1	15817	15817	CD
cord-316525-uadfehr6	225	2	 	 	_SP
cord-316525-uadfehr6	226	1	53	53	CD
cord-316525-uadfehr6	226	2	 	 	_SP
cord-316525-uadfehr6	227	1	46	46	CD
cord-316525-uadfehr6	227	2	 	 	_SP
cord-316525-uadfehr6	228	1	87	87	CD
cord-316525-uadfehr6	228	2	 	 	_SP
cord-316525-uadfehr6	229	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	229	2	 	 	_SP
cord-316525-uadfehr6	230	1	15852	15852	CD
cord-316525-uadfehr6	230	2	 	 	_SP
cord-316525-uadfehr6	231	1	15908	15908	CD
cord-316525-uadfehr6	231	2	 	 	_SP
cord-316525-uadfehr6	231	3	57	57	CD
cord-316525-uadfehr6	231	4	 	 	_SP
cord-316525-uadfehr6	231	5	49	49	CD
cord-316525-uadfehr6	231	6	 	 	_SP
cord-316525-uadfehr6	232	1	86	86	CD
cord-316525-uadfehr6	232	2	 	 	_SP
cord-316525-uadfehr6	233	1	MHV	MHV	NNP
cord-316525-uadfehr6	233	2	 	 	_SP
cord-316525-uadfehr6	234	1	17088	17088	CD
cord-316525-uadfehr6	234	2	 	 	_SP
cord-316525-uadfehr6	235	1	17125	17125	CD
cord-316525-uadfehr6	235	2	 	 	_SP
cord-316525-uadfehr6	236	1	38	38	CD
cord-316525-uadfehr6	236	2	 	 	_SP
cord-316525-uadfehr6	237	1	35	35	CD
cord-316525-uadfehr6	237	2	 	 	_SP
cord-316525-uadfehr6	237	3	93	93	CD
cord-316525-uadfehr6	237	4	 	 	_SP
cord-316525-uadfehr6	238	1	IBV	IBV	NNP
cord-316525-uadfehr6	238	2	 	 	_SP
cord-316525-uadfehr6	239	1	17688	17688	CD
cord-316525-uadfehr6	239	2	 	 	_SP
cord-316525-uadfehr6	240	1	17714	17714	CD
cord-316525-uadfehr6	240	2	 	 	_SP
cord-316525-uadfehr6	241	1	27	27	CD
cord-316525-uadfehr6	241	2	 	 	_SP
cord-316525-uadfehr6	242	1	25	25	CD
cord-316525-uadfehr6	242	2	 	 	_SP
cord-316525-uadfehr6	243	1	93	93	CD
cord-316525-uadfehr6	243	2	 	 	_SP
cord-316525-uadfehr6	244	1	TGEV	TGEV	NNP
cord-316525-uadfehr6	244	2	 	 	_SP
cord-316525-uadfehr6	245	1	17757	17757	CD
cord-316525-uadfehr6	245	2	 	 	_SP
cord-316525-uadfehr6	246	1	17800	17800	CD
cord-316525-uadfehr6	246	2	 	 	_SP
cord-316525-uadfehr6	247	1	44	44	CD
cord-316525-uadfehr6	247	2	 	 	_SP
cord-316525-uadfehr6	248	1	39	39	CD
cord-316525-uadfehr6	248	2	 	 	_SP
cord-316525-uadfehr6	249	1	89	89	CD
cord-316525-uadfehr6	249	2	 	 	_SP
cord-316525-uadfehr6	249	3	PEDV	PEDV	NNP
cord-316525-uadfehr6	249	4	 	 	_SP
cord-316525-uadfehr6	250	1	17783	17783	CD
cord-316525-uadfehr6	250	2	 	 	_SP
cord-316525-uadfehr6	251	1	17809	17809	CD
cord-316525-uadfehr6	251	2	 	 	_SP
cord-316525-uadfehr6	252	1	27	27	CD
cord-316525-uadfehr6	252	2	 	 	_SP
cord-316525-uadfehr6	253	1	25	25	CD
cord-316525-uadfehr6	253	2	 	 	_SP
cord-316525-uadfehr6	253	3	93	93	CD
cord-316525-uadfehr6	253	4	 	 	_SP
cord-316525-uadfehr6	254	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	254	2	 	 	_SP
cord-316525-uadfehr6	255	1	18558	18558	CD
cord-316525-uadfehr6	255	2	 	 	_SP
cord-316525-uadfehr6	256	1	18577	18577	CD
cord-316525-uadfehr6	256	2	 	 	_SP
cord-316525-uadfehr6	257	1	20	20	CD
cord-316525-uadfehr6	257	2	 	 	_SP
cord-316525-uadfehr6	257	3	20	20	CD
cord-316525-uadfehr6	257	4	 	 	_SP
cord-316525-uadfehr6	257	5	100	100	CD
cord-316525-uadfehr6	257	6	 	 	_SP
cord-316525-uadfehr6	258	1	PEDV	PEDV	NNP
cord-316525-uadfehr6	258	2	 	 	_SP
cord-316525-uadfehr6	259	1	18771	18771	CD
cord-316525-uadfehr6	259	2	 	 	_SP
cord-316525-uadfehr6	260	1	18847	18847	CD
cord-316525-uadfehr6	260	2	 	 	_SP
cord-316525-uadfehr6	261	1	77	77	CD
cord-316525-uadfehr6	261	2	 	 	_SP
cord-316525-uadfehr6	262	1	65	65	CD
cord-316525-uadfehr6	262	2	 	 	_SP
cord-316525-uadfehr6	262	3	85	85	CD
cord-316525-uadfehr6	262	4	 	 	_SP
cord-316525-uadfehr6	263	1	TGEV	TGEV	NNP
cord-316525-uadfehr6	263	2	 	 	_SP
cord-316525-uadfehr6	264	1	18784	18784	CD
cord-316525-uadfehr6	264	2	 	 	_SP
cord-316525-uadfehr6	265	1	18833	18833	CD
cord-316525-uadfehr6	265	2	 	 	_SP
cord-316525-uadfehr6	266	1	50	50	CD
cord-316525-uadfehr6	266	2	 	 	_SP
cord-316525-uadfehr6	267	1	44	44	CD
cord-316525-uadfehr6	267	2	 	 	_SP
cord-316525-uadfehr6	267	3	88	88	CD
cord-316525-uadfehr6	267	4	 	 	_SP
cord-316525-uadfehr6	268	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	268	2	 	 	_SP
cord-316525-uadfehr6	269	1	19102	19102	CD
cord-316525-uadfehr6	269	2	 	 	_SP
cord-316525-uadfehr6	270	1	19132	19132	CD
cord-316525-uadfehr6	270	2	 	 	_SP
cord-316525-uadfehr6	271	1	31	31	CD
cord-316525-uadfehr6	271	2	 	 	_SP
cord-316525-uadfehr6	272	1	29	29	CD
cord-316525-uadfehr6	272	2	 	 	_SP
cord-316525-uadfehr6	272	3	94	94	CD
cord-316525-uadfehr6	272	4	 	 	_SP
cord-316525-uadfehr6	272	5	IBV	IBV	NNP
cord-316525-uadfehr6	272	6	 	 	_SP
cord-316525-uadfehr6	273	1	19113	19113	CD
cord-316525-uadfehr6	273	2	 	 	_SP
cord-316525-uadfehr6	274	1	19132	19132	CD
cord-316525-uadfehr6	274	2	 	 	_SP
cord-316525-uadfehr6	275	1	20	20	CD
cord-316525-uadfehr6	275	2	 	 	_SP
cord-316525-uadfehr6	275	3	20	20	CD
cord-316525-uadfehr6	275	4	 	 	_SP
cord-316525-uadfehr6	275	5	100	100	CD
cord-316525-uadfehr6	275	6	 	 	_SP
cord-316525-uadfehr6	276	1	HCoV	HCoV	NNP
cord-316525-uadfehr6	276	2	 	 	_SP
cord-316525-uadfehr6	277	1	19146	19146	CD
cord-316525-uadfehr6	277	2	 	 	_SP
cord-316525-uadfehr6	278	1	19252	19252	CD
cord-316525-uadfehr6	278	2	 	 	_SP
cord-316525-uadfehr6	278	3	107	107	CD
cord-316525-uadfehr6	278	4	 	 	_SP
cord-316525-uadfehr6	279	1	87	87	CD
cord-316525-uadfehr6	279	2	 	 	_SP
cord-316525-uadfehr6	280	1	82	82	CD
cord-316525-uadfehr6	280	2	 	 	_SP
cord-316525-uadfehr6	281	1	MHV	MHV	NNP
cord-316525-uadfehr6	281	2	 	 	_SP
cord-316525-uadfehr6	282	1	19201	19201	CD
cord-316525-uadfehr6	282	2	 	 	_SP
cord-316525-uadfehr6	282	3	19252	19252	CD
cord-316525-uadfehr6	282	4	 	 	_SP
cord-316525-uadfehr6	283	1	52	52	CD
cord-316525-uadfehr6	283	2	 	 	_SP
cord-316525-uadfehr6	284	1	45	45	CD
cord-316525-uadfehr6	284	2	 	 	_SP
cord-316525-uadfehr6	284	3	87	87	CD
cord-316525-uadfehr6	284	4	 	 	_SP
cord-316525-uadfehr6	285	1	IBV	IBV	NNP
cord-316525-uadfehr6	285	2	 	 	_SP
cord-316525-uadfehr6	285	3	19206	19206	CD
cord-316525-uadfehr6	285	4	 	 	_SP
cord-316525-uadfehr6	286	1	19253	19253	CD
cord-316525-uadfehr6	286	2	 	 	_SP
cord-316525-uadfehr6	287	1	48	48	CD
cord-316525-uadfehr6	287	2	 	 	_SP
cord-316525-uadfehr6	288	1	44	44	CD
cord-316525-uadfehr6	288	2	 	 	_SP
cord-316525-uadfehr6	288	3	92	92	CD
cord-316525-uadfehr6	288	4	 	 	_SP
cord-316525-uadfehr6	289	1	BCoV	BCoV	NNP
cord-316525-uadfehr6	289	2	 	 	_SP
cord-316525-uadfehr6	290	1	19396	19396	CD
cord-316525-uadfehr6	290	2	 	 	_SP
cord-316525-uadfehr6	291	1	19420	19420	CD
cord-316525-uadfehr6	291	2	 	 	_SP
cord-316525-uadfehr6	292	1	25	25	CD
cord-316525-uadfehr6	292	2	 	 	_SP
cord-316525-uadfehr6	293	1	24	24	CD
cord-316525-uadfehr6	293	2	 	 	_SP
cord-316525-uadfehr6	294	1	96	96	CD
cord-316525-uadfehr6	294	2	 	 	_SP
cord-316525-uadfehr6	295	1	MHV	MHV	NNP
cord-316525-uadfehr6	295	2	 	 	_SP