id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-102892-nt1zoktv	Sweeney, Blake A.	R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types	2020-09-11		.txt	text/plain	3366	188	54	Consensus tRNA primary 213 sequence with 2D structure for each isotype of each taxonomic domain was generated based 214 on the tRNA alignments used for building the isotype-specific covariance models in tRNAscan-215 SE 2.0 16 . 270 R2DT templates model the conserved core of most structured RNAs We classified each nucleotide in the resulting diagrams according to whether it matched a 282 template and found that 90.6% of nucleotides were displayed using the nucleotide locations 283 encoded in the templates, while 6.0% of nucleotides represented insertions compared to the 284 templates, and 3.4% of nucleotides matched the templates but required automatic repositioning 285 by the Traveler software (Table 2) . In addition, R2DT will benefit from the ongoing development Isotype-specific consensus tRNA sequences and 2D structures were generated using R-scape 52 389 from the alignments that were used to train and build the corresponding covariance models in 390 tRNAscan-SE 16 .	./cache/cord-102892-nt1zoktv.txt	./txt/cord-102892-nt1zoktv.txt