id sid tid token lemma pos cord-001824-7c37elh6 1 1 key key NN cord-001824-7c37elh6 1 2 : : : cord-001824-7c37elh6 2 1 cord-001824 cord-001824 NNP cord-001824-7c37elh6 2 2 - - HYPH cord-001824-7c37elh6 2 3 7c37elh6 7c37elh6 CD cord-001824-7c37elh6 2 4 authors author NNS cord-001824-7c37elh6 2 5 : : : cord-001824-7c37elh6 2 6 Tükenmez Tükenmez NNP cord-001824-7c37elh6 2 7 , , , cord-001824-7c37elh6 2 8 Hasan Hasan NNP cord-001824-7c37elh6 2 9 ; ; : cord-001824-7c37elh6 2 10 Xu Xu NNP cord-001824-7c37elh6 2 11 , , , cord-001824-7c37elh6 2 12 Hao Hao NNP cord-001824-7c37elh6 2 13 ; ; : cord-001824-7c37elh6 2 14 Esberg Esberg NNP cord-001824-7c37elh6 2 15 , , , cord-001824-7c37elh6 2 16 Anders Anders NNP cord-001824-7c37elh6 2 17 ; ; : cord-001824-7c37elh6 2 18 Byström Byström NNP cord-001824-7c37elh6 2 19 , , , cord-001824-7c37elh6 2 20 Anders Anders NNP cord-001824-7c37elh6 2 21 S. S. NNP cord-001824-7c37elh6 2 22 title title NN cord-001824-7c37elh6 2 23 : : : cord-001824-7c37elh6 3 1 The the DT cord-001824-7c37elh6 3 2 role role NN cord-001824-7c37elh6 3 3 of of IN cord-001824-7c37elh6 3 4 wobble wobble NN cord-001824-7c37elh6 3 5 uridine uridine NN cord-001824-7c37elh6 3 6 modifications modification NNS cord-001824-7c37elh6 3 7 in in IN cord-001824-7c37elh6 3 8 +1 +1 HYPH cord-001824-7c37elh6 3 9 translational translational JJ cord-001824-7c37elh6 3 10 frameshifting frameshifting NN cord-001824-7c37elh6 3 11 in in IN cord-001824-7c37elh6 3 12 eukaryotes eukaryote NNS cord-001824-7c37elh6 3 13 date date NN cord-001824-7c37elh6 3 14 : : : cord-001824-7c37elh6 3 15 2015 2015 CD cord-001824-7c37elh6 3 16 - - SYM cord-001824-7c37elh6 3 17 10 10 CD cord-001824-7c37elh6 3 18 - - SYM cord-001824-7c37elh6 3 19 30 30 CD cord-001824-7c37elh6 3 20 journal journal NN cord-001824-7c37elh6 3 21 : : : cord-001824-7c37elh6 3 22 Nucleic nucleic JJ cord-001824-7c37elh6 3 23 Acids acid NNS cord-001824-7c37elh6 3 24 Res res NN cord-001824-7c37elh6 3 25 DOI doi NN cord-001824-7c37elh6 3 26 : : : cord-001824-7c37elh6 4 1 10.1093 10.1093 CD cord-001824-7c37elh6 4 2 / / SYM cord-001824-7c37elh6 4 3 nar nar NN cord-001824-7c37elh6 4 4 / / SYM cord-001824-7c37elh6 4 5 gkv832 gkv832 NNP cord-001824-7c37elh6 4 6 sha sha NNP cord-001824-7c37elh6 4 7 : : : cord-001824-7c37elh6 5 1 053aa0c7280e2bb41a033cb0ae7c0d6bd07afc40 053aa0c7280e2bb41a033cb0ae7c0d6bd07afc40 NFP cord-001824-7c37elh6 5 2 doc_id doc_id CD cord-001824-7c37elh6 5 3 : : : cord-001824-7c37elh6 6 1 1824 1824 CD cord-001824-7c37elh6 6 2 cord_uid cord_uid NNS cord-001824-7c37elh6 6 3 : : : cord-001824-7c37elh6 6 4 7c37elh6 7c37elh6 CD cord-001824-7c37elh6 7 1 In in IN cord-001824-7c37elh6 7 2 Saccharomyces Saccharomyces NNP cord-001824-7c37elh6 7 3 cerevisiae cerevisiae NNS cord-001824-7c37elh6 7 4 , , , cord-001824-7c37elh6 7 5 11 11 CD cord-001824-7c37elh6 7 6 out out IN cord-001824-7c37elh6 7 7 of of IN cord-001824-7c37elh6 7 8 42 42 CD cord-001824-7c37elh6 7 9 tRNA tRNA NNP cord-001824-7c37elh6 7 10 species specie NNS cord-001824-7c37elh6 7 11 contain contain VBP cord-001824-7c37elh6 7 12 5-methoxycarbonylmethyl-2-thiouridine 5-methoxycarbonylmethyl-2-thiouridine CD cord-001824-7c37elh6 7 13 ( ( -LRB- cord-001824-7c37elh6 7 14 mcm(5)s(2)U mcm(5)s(2)U NNP cord-001824-7c37elh6 7 15 ) ) -RRB- cord-001824-7c37elh6 7 16 , , , cord-001824-7c37elh6 7 17 5-methoxycarbonylmethyluridine 5-methoxycarbonylmethyluridine CD cord-001824-7c37elh6 7 18 ( ( -LRB- cord-001824-7c37elh6 7 19 mcm(5)U mcm(5)U NNP cord-001824-7c37elh6 7 20 ) ) -RRB- cord-001824-7c37elh6 7 21 , , , cord-001824-7c37elh6 7 22 5-carbamoylmethyluridine 5-carbamoylmethyluridine CD cord-001824-7c37elh6 7 23 ( ( -LRB- cord-001824-7c37elh6 7 24 ncm(5)U ncm(5)u JJ cord-001824-7c37elh6 7 25 ) ) -RRB- cord-001824-7c37elh6 7 26 or or CC cord-001824-7c37elh6 7 27 5-carbamoylmethyl-2′-O 5-carbamoylmethyl-2′-o CD cord-001824-7c37elh6 7 28 - - HYPH cord-001824-7c37elh6 7 29 methyluridine methyluridine NN cord-001824-7c37elh6 7 30 ( ( -LRB- cord-001824-7c37elh6 7 31 ncm(5)Um ncm(5)Um NNP cord-001824-7c37elh6 7 32 ) ) -RRB- cord-001824-7c37elh6 7 33 nucleosides nucleoside NNS cord-001824-7c37elh6 7 34 in in IN cord-001824-7c37elh6 7 35 the the DT cord-001824-7c37elh6 7 36 anticodon anticodon NN cord-001824-7c37elh6 7 37 at at IN cord-001824-7c37elh6 7 38 the the DT cord-001824-7c37elh6 7 39 wobble wobble NN cord-001824-7c37elh6 7 40 position position NN cord-001824-7c37elh6 7 41 ( ( -LRB- cord-001824-7c37elh6 7 42 U(34 U(34 NNP cord-001824-7c37elh6 7 43 ) ) -RRB- cord-001824-7c37elh6 7 44 ) ) -RRB- cord-001824-7c37elh6 7 45 . . . cord-001824-7c37elh6 8 1 Earlier early RBR cord-001824-7c37elh6 8 2 we -PRON- PRP cord-001824-7c37elh6 8 3 showed show VBD cord-001824-7c37elh6 8 4 that that IN cord-001824-7c37elh6 8 5 mutants mutant NNS cord-001824-7c37elh6 8 6 unable unable JJ cord-001824-7c37elh6 8 7 to to TO cord-001824-7c37elh6 8 8 form form VB cord-001824-7c37elh6 8 9 the the DT cord-001824-7c37elh6 8 10 side side NN cord-001824-7c37elh6 8 11 chain chain NN cord-001824-7c37elh6 8 12 at at IN cord-001824-7c37elh6 8 13 position position NN cord-001824-7c37elh6 8 14 5 5 CD cord-001824-7c37elh6 8 15 ( ( -LRB- cord-001824-7c37elh6 8 16 ncm(5 ncm(5 NNP cord-001824-7c37elh6 8 17 ) ) -RRB- cord-001824-7c37elh6 8 18 or or CC cord-001824-7c37elh6 8 19 mcm(5 mcm(5 NN cord-001824-7c37elh6 8 20 ) ) -RRB- cord-001824-7c37elh6 8 21 ) ) -RRB- cord-001824-7c37elh6 8 22 or or CC cord-001824-7c37elh6 8 23 lacking lack VBG cord-001824-7c37elh6 8 24 sulphur sulphur NN cord-001824-7c37elh6 8 25 at at IN cord-001824-7c37elh6 8 26 position position NN cord-001824-7c37elh6 8 27 2 2 CD cord-001824-7c37elh6 8 28 ( ( -LRB- cord-001824-7c37elh6 8 29 s(2 s(2 NNP cord-001824-7c37elh6 8 30 ) ) -RRB- cord-001824-7c37elh6 8 31 ) ) -RRB- cord-001824-7c37elh6 8 32 of of IN cord-001824-7c37elh6 8 33 U(34 U(34 NNP cord-001824-7c37elh6 8 34 ) ) -RRB- cord-001824-7c37elh6 8 35 result result VB cord-001824-7c37elh6 8 36 in in IN cord-001824-7c37elh6 8 37 pleiotropic pleiotropic JJ cord-001824-7c37elh6 8 38 phenotypes phenotype NNS cord-001824-7c37elh6 8 39 , , , cord-001824-7c37elh6 8 40 which which WDT cord-001824-7c37elh6 8 41 are be VBP cord-001824-7c37elh6 8 42 all all DT cord-001824-7c37elh6 8 43 suppressed suppress VBN cord-001824-7c37elh6 8 44 by by IN cord-001824-7c37elh6 8 45 overexpression overexpression NN cord-001824-7c37elh6 8 46 of of IN cord-001824-7c37elh6 8 47 hypomodified hypomodified JJ cord-001824-7c37elh6 8 48 tRNAs trna NNS cord-001824-7c37elh6 8 49 . . . cord-001824-7c37elh6 9 1 This this DT cord-001824-7c37elh6 9 2 observation observation NN cord-001824-7c37elh6 9 3 suggests suggest VBZ cord-001824-7c37elh6 9 4 that that IN cord-001824-7c37elh6 9 5 the the DT cord-001824-7c37elh6 9 6 observed observed JJ cord-001824-7c37elh6 9 7 phenotypes phenotype NNS cord-001824-7c37elh6 9 8 are be VBP cord-001824-7c37elh6 9 9 due due JJ cord-001824-7c37elh6 9 10 to to IN cord-001824-7c37elh6 9 11 inefficient inefficient JJ cord-001824-7c37elh6 9 12 reading reading NN cord-001824-7c37elh6 9 13 of of IN cord-001824-7c37elh6 9 14 cognate cognate JJ cord-001824-7c37elh6 9 15 codons codon NNS cord-001824-7c37elh6 9 16 or or CC cord-001824-7c37elh6 9 17 an an DT cord-001824-7c37elh6 9 18 increased increase VBN cord-001824-7c37elh6 9 19 frameshifting frameshifting NN cord-001824-7c37elh6 9 20 . . . cord-001824-7c37elh6 10 1 The the DT cord-001824-7c37elh6 10 2 latter latter JJ cord-001824-7c37elh6 10 3 may may MD cord-001824-7c37elh6 10 4 be be VB cord-001824-7c37elh6 10 5 caused cause VBN cord-001824-7c37elh6 10 6 by by IN cord-001824-7c37elh6 10 7 a a DT cord-001824-7c37elh6 10 8 ternary ternary JJ cord-001824-7c37elh6 10 9 complex complex NN cord-001824-7c37elh6 10 10 ( ( -LRB- cord-001824-7c37elh6 10 11 aminoacyl aminoacyl VBN cord-001824-7c37elh6 10 12 - - HYPH cord-001824-7c37elh6 10 13 tRNA*eEF1A*GTP trna*eef1a*gtp NN cord-001824-7c37elh6 10 14 ) ) -RRB- cord-001824-7c37elh6 10 15 with with IN cord-001824-7c37elh6 10 16 a a DT cord-001824-7c37elh6 10 17 modification modification NN cord-001824-7c37elh6 10 18 deficient deficient JJ cord-001824-7c37elh6 10 19 tRNA trna NN cord-001824-7c37elh6 10 20 inefficiently inefficiently RB cord-001824-7c37elh6 10 21 being be VBG cord-001824-7c37elh6 10 22 accepted accept VBN cord-001824-7c37elh6 10 23 to to IN cord-001824-7c37elh6 10 24 the the DT cord-001824-7c37elh6 10 25 ribosomal ribosomal JJ cord-001824-7c37elh6 10 26 A a NN cord-001824-7c37elh6 10 27 - - HYPH cord-001824-7c37elh6 10 28 site site NN cord-001824-7c37elh6 10 29 and and CC cord-001824-7c37elh6 10 30 thereby thereby RB cord-001824-7c37elh6 10 31 allowing allow VBG cord-001824-7c37elh6 10 32 an an DT cord-001824-7c37elh6 10 33 increased increase VBN cord-001824-7c37elh6 10 34 peptidyl peptidyl JJ cord-001824-7c37elh6 10 35 - - HYPH cord-001824-7c37elh6 10 36 tRNA trna NN cord-001824-7c37elh6 10 37 slippage slippage NN cord-001824-7c37elh6 10 38 and and CC cord-001824-7c37elh6 10 39 thus thus RB cord-001824-7c37elh6 10 40 a a DT cord-001824-7c37elh6 10 41 frameshift frameshift NN cord-001824-7c37elh6 10 42 error error NN cord-001824-7c37elh6 10 43 . . . cord-001824-7c37elh6 11 1 In in IN cord-001824-7c37elh6 11 2 this this DT cord-001824-7c37elh6 11 3 study study NN cord-001824-7c37elh6 11 4 , , , cord-001824-7c37elh6 11 5 we -PRON- PRP cord-001824-7c37elh6 11 6 have have VBP cord-001824-7c37elh6 11 7 investigated investigate VBN cord-001824-7c37elh6 11 8 the the DT cord-001824-7c37elh6 11 9 role role NN cord-001824-7c37elh6 11 10 of of IN cord-001824-7c37elh6 11 11 wobble wobble NN cord-001824-7c37elh6 11 12 uridine uridine NN cord-001824-7c37elh6 11 13 modifications modification NNS cord-001824-7c37elh6 11 14 in in IN cord-001824-7c37elh6 11 15 reading read VBG cord-001824-7c37elh6 11 16 frame frame NN cord-001824-7c37elh6 11 17 maintenance maintenance NN cord-001824-7c37elh6 11 18 , , , cord-001824-7c37elh6 11 19 using use VBG cord-001824-7c37elh6 11 20 either either CC cord-001824-7c37elh6 11 21 the the DT cord-001824-7c37elh6 11 22 Renilla Renilla NNP cord-001824-7c37elh6 11 23 / / SYM cord-001824-7c37elh6 11 24 Firefly Firefly NNP cord-001824-7c37elh6 11 25 luciferase luciferase NN cord-001824-7c37elh6 11 26 bicistronic bicistronic JJ cord-001824-7c37elh6 11 27 reporter reporter NN cord-001824-7c37elh6 11 28 system system NN cord-001824-7c37elh6 11 29 or or CC cord-001824-7c37elh6 11 30 a a DT cord-001824-7c37elh6 11 31 modified modified JJ cord-001824-7c37elh6 11 32 Ty1 ty1 NN cord-001824-7c37elh6 11 33 frameshifting frameshifte VBG cord-001824-7c37elh6 11 34 site site NN cord-001824-7c37elh6 11 35 in in IN cord-001824-7c37elh6 11 36 a a DT cord-001824-7c37elh6 11 37 HIS4A::lacZ HIS4A::lacZ NNP cord-001824-7c37elh6 11 38 reporter reporter NN cord-001824-7c37elh6 11 39 system system NN cord-001824-7c37elh6 11 40 . . . cord-001824-7c37elh6 12 1 We -PRON- PRP cord-001824-7c37elh6 12 2 here here RB cord-001824-7c37elh6 12 3 show show VBP cord-001824-7c37elh6 12 4 that that IN cord-001824-7c37elh6 12 5 the the DT cord-001824-7c37elh6 12 6 presence presence NN cord-001824-7c37elh6 12 7 of of IN cord-001824-7c37elh6 12 8 mcm(5 mcm(5 NN cord-001824-7c37elh6 12 9 ) ) -RRB- cord-001824-7c37elh6 12 10 and and CC cord-001824-7c37elh6 12 11 s(2 s(2 NNP cord-001824-7c37elh6 12 12 ) ) -RRB- cord-001824-7c37elh6 12 13 side side NN cord-001824-7c37elh6 12 14 groups group NNS cord-001824-7c37elh6 12 15 at at IN cord-001824-7c37elh6 12 16 wobble wobble NN cord-001824-7c37elh6 12 17 uridines uridine NNS cord-001824-7c37elh6 12 18 are be VBP cord-001824-7c37elh6 12 19 important important JJ cord-001824-7c37elh6 12 20 for for IN cord-001824-7c37elh6 12 21 reading read VBG cord-001824-7c37elh6 12 22 frame frame NN cord-001824-7c37elh6 12 23 maintenance maintenance NN cord-001824-7c37elh6 12 24 and and CC cord-001824-7c37elh6 12 25 thus thus RB cord-001824-7c37elh6 12 26 the the DT cord-001824-7c37elh6 12 27 aforementioned aforementioned JJ cord-001824-7c37elh6 12 28 mutant mutant JJ cord-001824-7c37elh6 12 29 phenotypes phenotype NNS cord-001824-7c37elh6 12 30 might may MD cord-001824-7c37elh6 12 31 partly partly RB cord-001824-7c37elh6 12 32 be be VB cord-001824-7c37elh6 12 33 due due JJ cord-001824-7c37elh6 12 34 to to IN cord-001824-7c37elh6 12 35 frameshift frameshift NN cord-001824-7c37elh6 12 36 errors error NNS cord-001824-7c37elh6 12 37 . . . cord-001824-7c37elh6 13 1 Transfer transfer NN cord-001824-7c37elh6 13 2 of of IN cord-001824-7c37elh6 13 3 genetic genetic JJ cord-001824-7c37elh6 13 4 information information NN cord-001824-7c37elh6 13 5 from from IN cord-001824-7c37elh6 13 6 mRNA mRNA NNP cord-001824-7c37elh6 13 7 into into IN cord-001824-7c37elh6 13 8 proteins protein NNS cord-001824-7c37elh6 13 9 is be VBZ cord-001824-7c37elh6 13 10 the the DT cord-001824-7c37elh6 13 11 most most JJS cord-001824-7c37elh6 13 12 energy energy NN cord-001824-7c37elh6 13 13 consuming consuming NN cord-001824-7c37elh6 13 14 process process NN cord-001824-7c37elh6 13 15 in in IN cord-001824-7c37elh6 13 16 the the DT cord-001824-7c37elh6 13 17 cell cell NN cord-001824-7c37elh6 13 18 and and CC cord-001824-7c37elh6 13 19 the the DT cord-001824-7c37elh6 13 20 translation translation NN cord-001824-7c37elh6 13 21 machinery machinery NN cord-001824-7c37elh6 13 22 needs need VBZ cord-001824-7c37elh6 13 23 to to TO cord-001824-7c37elh6 13 24 decode decode VB cord-001824-7c37elh6 13 25 mRNAs mrnas PRP cord-001824-7c37elh6 13 26 with with IN cord-001824-7c37elh6 13 27 high high JJ cord-001824-7c37elh6 13 28 efficiency efficiency NN cord-001824-7c37elh6 13 29 and and CC cord-001824-7c37elh6 13 30 fidelity fidelity NN cord-001824-7c37elh6 13 31 ( ( -LRB- cord-001824-7c37elh6 13 32 1 1 CD cord-001824-7c37elh6 13 33 ) ) -RRB- cord-001824-7c37elh6 13 34 . . . cord-001824-7c37elh6 14 1 Even even RB cord-001824-7c37elh6 14 2 though though IN cord-001824-7c37elh6 14 3 the the DT cord-001824-7c37elh6 14 4 translational translational JJ cord-001824-7c37elh6 14 5 machinery machinery NN cord-001824-7c37elh6 14 6 transfers transfer VBZ cord-001824-7c37elh6 14 7 the the DT cord-001824-7c37elh6 14 8 information information NN cord-001824-7c37elh6 14 9 in in IN cord-001824-7c37elh6 14 10 mRNA mrna NN cord-001824-7c37elh6 14 11 into into IN cord-001824-7c37elh6 14 12 protein protein NN cord-001824-7c37elh6 14 13 with with IN cord-001824-7c37elh6 14 14 high high JJ cord-001824-7c37elh6 14 15 fidelity fidelity NN cord-001824-7c37elh6 14 16 , , , cord-001824-7c37elh6 14 17 errors error NNS cord-001824-7c37elh6 14 18 occur occur VBP cord-001824-7c37elh6 14 19 at at IN cord-001824-7c37elh6 14 20 a a DT cord-001824-7c37elh6 14 21 low low JJ cord-001824-7c37elh6 14 22 frequency frequency NN cord-001824-7c37elh6 14 23 . . . cord-001824-7c37elh6 15 1 Missense missense NN cord-001824-7c37elh6 15 2 errors error NNS cord-001824-7c37elh6 15 3 are be VBP cord-001824-7c37elh6 15 4 in in IN cord-001824-7c37elh6 15 5 most most JJS cord-001824-7c37elh6 15 6 cases case NNS cord-001824-7c37elh6 15 7 not not RB cord-001824-7c37elh6 15 8 harmful harmful JJ cord-001824-7c37elh6 15 9 to to IN cord-001824-7c37elh6 15 10 the the DT cord-001824-7c37elh6 15 11 function function NN cord-001824-7c37elh6 15 12 of of IN cord-001824-7c37elh6 15 13 a a DT cord-001824-7c37elh6 15 14 protein protein NN cord-001824-7c37elh6 15 15 , , , cord-001824-7c37elh6 15 16 since since IN cord-001824-7c37elh6 15 17 such such JJ cord-001824-7c37elh6 15 18 errors error NNS cord-001824-7c37elh6 15 19 alter alter VBP cord-001824-7c37elh6 15 20 only only RB cord-001824-7c37elh6 15 21 one one CD cord-001824-7c37elh6 15 22 single single JJ cord-001824-7c37elh6 15 23 amino amino NN cord-001824-7c37elh6 15 24 acid acid NN cord-001824-7c37elh6 15 25 , , , cord-001824-7c37elh6 15 26 which which WDT cord-001824-7c37elh6 15 27 will will MD cord-001824-7c37elh6 15 28 not not RB cord-001824-7c37elh6 15 29 interfere interfere VB cord-001824-7c37elh6 15 30 with with IN cord-001824-7c37elh6 15 31 the the DT cord-001824-7c37elh6 15 32 function function NN cord-001824-7c37elh6 15 33 or or CC cord-001824-7c37elh6 15 34 stability stability NN cord-001824-7c37elh6 15 35 of of IN cord-001824-7c37elh6 15 36 the the DT cord-001824-7c37elh6 15 37 protein protein NN cord-001824-7c37elh6 15 38 if if IN cord-001824-7c37elh6 15 39 they -PRON- PRP cord-001824-7c37elh6 15 40 occur occur VBP cord-001824-7c37elh6 15 41 in in IN cord-001824-7c37elh6 15 42 non non JJ cord-001824-7c37elh6 15 43 - - JJ cord-001824-7c37elh6 15 44 critical critical JJ cord-001824-7c37elh6 15 45 positions position NNS cord-001824-7c37elh6 15 46 . . . cord-001824-7c37elh6 16 1 In in IN cord-001824-7c37elh6 16 2 contrast contrast NN cord-001824-7c37elh6 16 3 , , , cord-001824-7c37elh6 16 4 processivity processivity NN cord-001824-7c37elh6 16 5 errors error NNS cord-001824-7c37elh6 16 6 , , , cord-001824-7c37elh6 16 7 like like IN cord-001824-7c37elh6 16 8 frameshift frameshift NN cord-001824-7c37elh6 16 9 errors error NNS cord-001824-7c37elh6 16 10 , , , cord-001824-7c37elh6 16 11 are be VBP cord-001824-7c37elh6 16 12 detrimental detrimental JJ cord-001824-7c37elh6 16 13 , , , cord-001824-7c37elh6 16 14 since since IN cord-001824-7c37elh6 16 15 they -PRON- PRP cord-001824-7c37elh6 16 16 completely completely RB cord-001824-7c37elh6 16 17 change change VBP cord-001824-7c37elh6 16 18 the the DT cord-001824-7c37elh6 16 19 amino amino NN cord-001824-7c37elh6 16 20 acid acid NN cord-001824-7c37elh6 16 21 sequence sequence NN cord-001824-7c37elh6 16 22 downstream downstream RB cord-001824-7c37elh6 16 23 of of IN cord-001824-7c37elh6 16 24 the the DT cord-001824-7c37elh6 16 25 frameshift frameshift NN cord-001824-7c37elh6 16 26 site site NN cord-001824-7c37elh6 16 27 . . . cord-001824-7c37elh6 17 1 Moreover moreover RB cord-001824-7c37elh6 17 2 , , , cord-001824-7c37elh6 17 3 following follow VBG cord-001824-7c37elh6 17 4 such such PDT cord-001824-7c37elh6 17 5 an an DT cord-001824-7c37elh6 17 6 error error NN cord-001824-7c37elh6 17 7 , , , cord-001824-7c37elh6 17 8 the the DT cord-001824-7c37elh6 17 9 ribosome ribosome NN cord-001824-7c37elh6 17 10 frequently frequently RB cord-001824-7c37elh6 17 11 encounters encounter VBZ cord-001824-7c37elh6 17 12 a a DT cord-001824-7c37elh6 17 13 stop stop NN cord-001824-7c37elh6 17 14 codon codon NN cord-001824-7c37elh6 17 15 in in IN cord-001824-7c37elh6 17 16 the the DT cord-001824-7c37elh6 17 17 new new JJ cord-001824-7c37elh6 17 18 reading reading NN cord-001824-7c37elh6 17 19 frame frame NN cord-001824-7c37elh6 17 20 resulting result VBG cord-001824-7c37elh6 17 21 in in IN cord-001824-7c37elh6 17 22 premature premature JJ cord-001824-7c37elh6 17 23 termination termination NN cord-001824-7c37elh6 17 24 of of IN cord-001824-7c37elh6 17 25 translation translation NN cord-001824-7c37elh6 17 26 . . . cord-001824-7c37elh6 18 1 Accordingly accordingly RB cord-001824-7c37elh6 18 2 , , , cord-001824-7c37elh6 18 3 the the DT cord-001824-7c37elh6 18 4 frequency frequency NN cord-001824-7c37elh6 18 5 of of IN cord-001824-7c37elh6 18 6 frameshift frameshift NN cord-001824-7c37elh6 18 7 errors error NNS cord-001824-7c37elh6 18 8 is be VBZ cord-001824-7c37elh6 18 9 about about RB cord-001824-7c37elh6 18 10 10-fold 10-fold JJ cord-001824-7c37elh6 18 11 lower low JJR cord-001824-7c37elh6 18 12 than than IN cord-001824-7c37elh6 18 13 the the DT cord-001824-7c37elh6 18 14 frequency frequency NN cord-001824-7c37elh6 18 15 of of IN cord-001824-7c37elh6 18 16 missense missense NN cord-001824-7c37elh6 18 17 errors error NNS cord-001824-7c37elh6 18 18 ( ( -LRB- cord-001824-7c37elh6 18 19 1 1 CD cord-001824-7c37elh6 18 20 , , , cord-001824-7c37elh6 18 21 2 2 CD cord-001824-7c37elh6 18 22 ) ) -RRB- cord-001824-7c37elh6 18 23 . . . cord-001824-7c37elh6 19 1 There there EX cord-001824-7c37elh6 19 2 are be VBP cord-001824-7c37elh6 19 3 many many JJ cord-001824-7c37elh6 19 4 examples example NNS cord-001824-7c37elh6 19 5 where where WRB cord-001824-7c37elh6 19 6 alterations alteration NNS cord-001824-7c37elh6 19 7 in in IN cord-001824-7c37elh6 19 8 the the DT cord-001824-7c37elh6 19 9 tRNA tRNA NNP cord-001824-7c37elh6 19 10 structure structure NN cord-001824-7c37elh6 19 11 , , , cord-001824-7c37elh6 19 12 e.g. e.g. IN cord-001824-7c37elh6 19 13 lack lack NN cord-001824-7c37elh6 19 14 of of IN cord-001824-7c37elh6 19 15 a a DT cord-001824-7c37elh6 19 16 modified modified JJ cord-001824-7c37elh6 19 17 nucleoside nucleoside NN cord-001824-7c37elh6 19 18 , , , cord-001824-7c37elh6 19 19 will will MD cord-001824-7c37elh6 19 20 affect affect VB cord-001824-7c37elh6 19 21 the the DT cord-001824-7c37elh6 19 22 fidelity fidelity NN cord-001824-7c37elh6 19 23 of of IN cord-001824-7c37elh6 19 24 reading read VBG cord-001824-7c37elh6 19 25 frame frame NN cord-001824-7c37elh6 19 26 maintenance maintenance NN cord-001824-7c37elh6 19 27 ( ( -LRB- cord-001824-7c37elh6 19 28 3 3 CD cord-001824-7c37elh6 19 29 , , , cord-001824-7c37elh6 19 30 4 4 CD cord-001824-7c37elh6 19 31 ) ) -RRB- cord-001824-7c37elh6 19 32 . . . cord-001824-7c37elh6 20 1 In in IN cord-001824-7c37elh6 20 2 bacteria bacteria NNS cord-001824-7c37elh6 20 3 , , , cord-001824-7c37elh6 20 4 modified modify VBN cord-001824-7c37elh6 20 5 nucleosides nucleoside NNS cord-001824-7c37elh6 20 6 of of IN cord-001824-7c37elh6 20 7 different different JJ cord-001824-7c37elh6 20 8 chemical chemical NN cord-001824-7c37elh6 20 9 structures structure NNS cord-001824-7c37elh6 20 10 , , , cord-001824-7c37elh6 20 11 present present JJ cord-001824-7c37elh6 20 12 in in IN cord-001824-7c37elh6 20 13 different different JJ cord-001824-7c37elh6 20 14 positions position NNS cord-001824-7c37elh6 20 15 , , , cord-001824-7c37elh6 20 16 and and CC cord-001824-7c37elh6 20 17 in in IN cord-001824-7c37elh6 20 18 different different JJ cord-001824-7c37elh6 20 19 species specie NNS cord-001824-7c37elh6 20 20 of of IN cord-001824-7c37elh6 20 21 the the DT cord-001824-7c37elh6 20 22 tRNA trna NN cord-001824-7c37elh6 20 23 all all DT cord-001824-7c37elh6 20 24 prevent prevent VBP cord-001824-7c37elh6 20 25 frameshifts frameshifts NNP cord-001824-7c37elh6 20 26 errors error NNS cord-001824-7c37elh6 20 27 ( ( -LRB- cord-001824-7c37elh6 20 28 5 5 CD cord-001824-7c37elh6 20 29 , , , cord-001824-7c37elh6 20 30 6 6 CD cord-001824-7c37elh6 20 31 ) ) -RRB- cord-001824-7c37elh6 20 32 . . . cord-001824-7c37elh6 21 1 In in IN cord-001824-7c37elh6 21 2 eukaryotes eukaryote NNS cord-001824-7c37elh6 21 3 , , , cord-001824-7c37elh6 21 4 both both DT cord-001824-7c37elh6 21 5 wyosin wyosin NNP cord-001824-7c37elh6 21 6 ( ( -LRB- cord-001824-7c37elh6 21 7 yW yW NNP cord-001824-7c37elh6 21 8 ) ) -RRB- cord-001824-7c37elh6 21 9 and and CC cord-001824-7c37elh6 21 10 queosine queosine NNP cord-001824-7c37elh6 21 11 ( ( -LRB- cord-001824-7c37elh6 21 12 Q Q NNP cord-001824-7c37elh6 21 13 ) ) -RRB- cord-001824-7c37elh6 21 14 in in IN cord-001824-7c37elh6 21 15 rabbit rabbit NN cord-001824-7c37elh6 21 16 reticulocytes reticulocyte NNS cord-001824-7c37elh6 21 17 as as RB cord-001824-7c37elh6 21 18 well well RB cord-001824-7c37elh6 21 19 as as IN cord-001824-7c37elh6 21 20 other other JJ cord-001824-7c37elh6 21 21 modified modify VBN cord-001824-7c37elh6 21 22 nucleosides nucleoside NNS cord-001824-7c37elh6 21 23 present present JJ cord-001824-7c37elh6 21 24 in in IN cord-001824-7c37elh6 21 25 the the DT cord-001824-7c37elh6 21 26 anticodon anticodon NN cord-001824-7c37elh6 21 27 loop loop NN cord-001824-7c37elh6 21 28 of of IN cord-001824-7c37elh6 21 29 eukaryotic eukaryotic JJ cord-001824-7c37elh6 22 1 tRNAs trna NNS cord-001824-7c37elh6 22 2 are be VBP cord-001824-7c37elh6 22 3 important important JJ cord-001824-7c37elh6 22 4 to to TO cord-001824-7c37elh6 22 5 maintain maintain VB cord-001824-7c37elh6 22 6 the the DT cord-001824-7c37elh6 22 7 reading reading NN cord-001824-7c37elh6 22 8 frame frame NN cord-001824-7c37elh6 22 9 ( ( -LRB- cord-001824-7c37elh6 22 10 7 7 CD cord-001824-7c37elh6 22 11 , , , cord-001824-7c37elh6 22 12 8) 8) NN cord-001824-7c37elh6 22 13 . . . cord-001824-7c37elh6 23 1 Synthesis synthesis NN cord-001824-7c37elh6 23 2 of of IN cord-001824-7c37elh6 23 3 yW yW NNP cord-001824-7c37elh6 23 4 in in IN cord-001824-7c37elh6 23 5 yeast yeast NN cord-001824-7c37elh6 23 6 tRNA trna NN cord-001824-7c37elh6 23 7 occurs occur VBZ cord-001824-7c37elh6 23 8 in in IN cord-001824-7c37elh6 23 9 several several JJ cord-001824-7c37elh6 23 10 steps step NNS cord-001824-7c37elh6 23 11 and and CC cord-001824-7c37elh6 24 1 whereas whereas IN cord-001824-7c37elh6 24 2 fully fully RB cord-001824-7c37elh6 24 3 modified modify VBN cord-001824-7c37elh6 24 4 yW yW NNP cord-001824-7c37elh6 24 5 has have VBZ cord-001824-7c37elh6 24 6 a a DT cord-001824-7c37elh6 24 7 low low JJ cord-001824-7c37elh6 24 8 frequency frequency NN cord-001824-7c37elh6 24 9 of of IN cord-001824-7c37elh6 24 10 frameshifting frameshifting NN cord-001824-7c37elh6 24 11 , , , cord-001824-7c37elh6 24 12 presence presence NN cord-001824-7c37elh6 24 13 of of IN cord-001824-7c37elh6 24 14 any any DT cord-001824-7c37elh6 24 15 of of IN cord-001824-7c37elh6 24 16 the the DT cord-001824-7c37elh6 24 17 various various JJ cord-001824-7c37elh6 24 18 intermediates intermediate NNS cord-001824-7c37elh6 24 19 in in IN cord-001824-7c37elh6 24 20 the the DT cord-001824-7c37elh6 24 21 synthesis synthesis NN cord-001824-7c37elh6 24 22 of of IN cord-001824-7c37elh6 24 23 yW yw NN cord-001824-7c37elh6 24 24 all all DT cord-001824-7c37elh6 24 25 increase increase NN cord-001824-7c37elh6 24 26 frameshifting frameshifting NN cord-001824-7c37elh6 24 27 ( ( -LRB- cord-001824-7c37elh6 24 28 9 9 CD cord-001824-7c37elh6 24 29 ) ) -RRB- cord-001824-7c37elh6 24 30 . . . cord-001824-7c37elh6 25 1 Also also RB cord-001824-7c37elh6 25 2 , , , cord-001824-7c37elh6 25 3 lack lack NN cord-001824-7c37elh6 25 4 of of IN cord-001824-7c37elh6 25 5 either either DT cord-001824-7c37elh6 25 6 cyclic cyclic NN cord-001824-7c37elh6 26 1 N6-threonylcarbamoyladenosine N6-threonylcarbamoyladenosine NNP cord-001824-7c37elh6 26 2 ( ( -LRB- cord-001824-7c37elh6 26 3 ct ct NNP cord-001824-7c37elh6 26 4 6 6 CD cord-001824-7c37elh6 26 5 A A NNP cord-001824-7c37elh6 26 6 ) ) -RRB- cord-001824-7c37elh6 26 7 at at IN cord-001824-7c37elh6 26 8 position position NN cord-001824-7c37elh6 26 9 37 37 CD cord-001824-7c37elh6 26 10 or or CC cord-001824-7c37elh6 26 11 pseudouridine pseudouridine NN cord-001824-7c37elh6 26 12 ( ( -LRB- cord-001824-7c37elh6 26 13 ) ) -RRB- cord-001824-7c37elh6 26 14 at at IN cord-001824-7c37elh6 26 15 position position NN cord-001824-7c37elh6 26 16 38 38 CD cord-001824-7c37elh6 26 17 and and CC cord-001824-7c37elh6 26 18 39 39 CD cord-001824-7c37elh6 26 19 in in IN cord-001824-7c37elh6 26 20 yeast yeast NN cord-001824-7c37elh6 26 21 tRNA trna NN cord-001824-7c37elh6 26 22 increases increase VBZ cord-001824-7c37elh6 26 23 +1 +1 XX cord-001824-7c37elh6 26 24 frameshifting frameshifting NN cord-001824-7c37elh6 26 25 ( ( -LRB- cord-001824-7c37elh6 26 26 10 10 CD cord-001824-7c37elh6 26 27 ) ) -RRB- cord-001824-7c37elh6 26 28 ( ( -LRB- cord-001824-7c37elh6 26 29 11 11 CD cord-001824-7c37elh6 26 30 ) ) -RRB- cord-001824-7c37elh6 26 31 ( ( -LRB- cord-001824-7c37elh6 26 32 12 12 CD cord-001824-7c37elh6 26 33 ) ) -RRB- cord-001824-7c37elh6 26 34 ( ( -LRB- cord-001824-7c37elh6 26 35 13 13 CD cord-001824-7c37elh6 26 36 ) ) -RRB- cord-001824-7c37elh6 26 37 . . . cord-001824-7c37elh6 27 1 Relevant relevant JJ cord-001824-7c37elh6 27 2 for for IN cord-001824-7c37elh6 27 3 this this DT cord-001824-7c37elh6 27 4 study study NN cord-001824-7c37elh6 27 5 , , , cord-001824-7c37elh6 27 6 the the DT cord-001824-7c37elh6 27 7 modified modify VBN cord-001824-7c37elh6 27 8 wobble wobble NN cord-001824-7c37elh6 27 9 nucleoside nucleoside RB cord-001824-7c37elh6 27 10 5methylaminomethyl-2-thiouridine 5methylaminomethyl-2-thiouridine CD cord-001824-7c37elh6 28 1 ( ( -LRB- cord-001824-7c37elh6 28 2 mnm mnm NNP cord-001824-7c37elh6 28 3 5 5 NNP cord-001824-7c37elh6 28 4 s s SYM cord-001824-7c37elh6 28 5 2 2 CD cord-001824-7c37elh6 28 6 U U NNP cord-001824-7c37elh6 28 7 34 34 CD cord-001824-7c37elh6 28 8 ) ) -RRB- cord-001824-7c37elh6 28 9 present present JJ cord-001824-7c37elh6 28 10 in in IN cord-001824-7c37elh6 28 11 bacterial bacterial JJ cord-001824-7c37elh6 28 12 tRNA trna NN cord-001824-7c37elh6 28 13 specific specific JJ cord-001824-7c37elh6 28 14 for for IN cord-001824-7c37elh6 28 15 Gln Gln NNP cord-001824-7c37elh6 28 16 , , , cord-001824-7c37elh6 28 17 Lys Lys NNP cord-001824-7c37elh6 28 18 and and CC cord-001824-7c37elh6 28 19 Glu Glu NNP cord-001824-7c37elh6 28 20 , , , cord-001824-7c37elh6 28 21 is be VBZ cord-001824-7c37elh6 28 22 important important JJ cord-001824-7c37elh6 28 23 for for IN cord-001824-7c37elh6 28 24 proper proper JJ cord-001824-7c37elh6 28 25 reading reading NN cord-001824-7c37elh6 28 26 frame frame NN cord-001824-7c37elh6 28 27 maintenance maintenance NN cord-001824-7c37elh6 29 1 ( ( -LRB- cord-001824-7c37elh6 29 2 The the DT cord-001824-7c37elh6 29 3 wobble wobble NN cord-001824-7c37elh6 29 4 nucleoside nucleoside NN cord-001824-7c37elh6 29 5 is be VBZ cord-001824-7c37elh6 29 6 in in IN cord-001824-7c37elh6 29 7 position position NN cord-001824-7c37elh6 29 8 34 34 CD cord-001824-7c37elh6 29 9 of of IN cord-001824-7c37elh6 29 10 the the DT cord-001824-7c37elh6 29 11 tRNA tRNA NNP cord-001824-7c37elh6 30 1 and and CC cord-001824-7c37elh6 30 2 we -PRON- PRP cord-001824-7c37elh6 30 3 denote denote VBP cord-001824-7c37elh6 30 4 such such PDT cord-001824-7c37elh6 30 5 a a DT cord-001824-7c37elh6 30 6 nucleoside nucleoside NN cord-001824-7c37elh6 30 7 as as IN cord-001824-7c37elh6 30 8 N n CD cord-001824-7c37elh6 30 9 34 34 CD cord-001824-7c37elh6 30 10 where where WRB cord-001824-7c37elh6 30 11 N N NNP cord-001824-7c37elh6 30 12 is be VBZ cord-001824-7c37elh6 30 13 any any DT cord-001824-7c37elh6 30 14 nucleoside nucleoside NN cord-001824-7c37elh6 30 15 . . . cord-001824-7c37elh6 30 16 ) ) -RRB- cord-001824-7c37elh6 31 1 ( ( -LRB- cord-001824-7c37elh6 31 2 6 6 CD cord-001824-7c37elh6 31 3 , , , cord-001824-7c37elh6 31 4 ( ( -LRB- cord-001824-7c37elh6 31 5 14 14 CD cord-001824-7c37elh6 31 6 ) ) -RRB- cord-001824-7c37elh6 31 7 ( ( -LRB- cord-001824-7c37elh6 31 8 15 15 CD cord-001824-7c37elh6 31 9 ) ) -RRB- cord-001824-7c37elh6 31 10 ( ( -LRB- cord-001824-7c37elh6 31 11 16 16 CD cord-001824-7c37elh6 31 12 ) ) -RRB- cord-001824-7c37elh6 31 13 ( ( -LRB- cord-001824-7c37elh6 31 14 17 17 CD cord-001824-7c37elh6 31 15 ) ) -RRB- cord-001824-7c37elh6 31 16 . . . cord-001824-7c37elh6 32 1 Apparently apparently RB cord-001824-7c37elh6 32 2 , , , cord-001824-7c37elh6 32 3 modification modification NN cord-001824-7c37elh6 32 4 status status NN cord-001824-7c37elh6 32 5 both both CC cord-001824-7c37elh6 32 6 in in IN cord-001824-7c37elh6 32 7 bacteria bacteria NNS cord-001824-7c37elh6 32 8 and and CC cord-001824-7c37elh6 32 9 in in IN cord-001824-7c37elh6 32 10 eukaryotes eukaryote NNS cord-001824-7c37elh6 32 11 is be VBZ cord-001824-7c37elh6 32 12 important important JJ cord-001824-7c37elh6 32 13 for for IN cord-001824-7c37elh6 32 14 a a DT cord-001824-7c37elh6 32 15 proper proper JJ cord-001824-7c37elh6 32 16 reading reading NN cord-001824-7c37elh6 32 17 frame frame NN cord-001824-7c37elh6 32 18 maintenance maintenance NN cord-001824-7c37elh6 32 19 ( ( -LRB- cord-001824-7c37elh6 32 20 3 3 CD cord-001824-7c37elh6 32 21 , , , cord-001824-7c37elh6 32 22 4 4 CD cord-001824-7c37elh6 32 23 ) ) -RRB- cord-001824-7c37elh6 32 24 . . . cord-001824-7c37elh6 33 1 A a DT cord-001824-7c37elh6 33 2 peptidyl peptidyl JJ cord-001824-7c37elh6 33 3 - - HYPH cord-001824-7c37elh6 33 4 tRNA trna NN cord-001824-7c37elh6 33 5 slippage slippage NN cord-001824-7c37elh6 33 6 model model NN cord-001824-7c37elh6 33 7 of of IN cord-001824-7c37elh6 33 8 how how WRB cord-001824-7c37elh6 33 9 tRNA trna NN cord-001824-7c37elh6 33 10 modification modification NN cord-001824-7c37elh6 33 11 deficiency deficiency NN cord-001824-7c37elh6 33 12 may may MD cord-001824-7c37elh6 33 13 induce induce VB cord-001824-7c37elh6 33 14 frameshifting frameshifting JJ cord-001824-7c37elh6 33 15 errors error NNS cord-001824-7c37elh6 33 16 is be VBZ cord-001824-7c37elh6 33 17 well well RB cord-001824-7c37elh6 33 18 established establish VBN cord-001824-7c37elh6 33 19 ( ( -LRB- cord-001824-7c37elh6 33 20 3 3 CD cord-001824-7c37elh6 33 21 , , , cord-001824-7c37elh6 33 22 4 4 CD cord-001824-7c37elh6 33 23 , , , cord-001824-7c37elh6 33 24 6 6 CD cord-001824-7c37elh6 33 25 , , , cord-001824-7c37elh6 33 26 ( ( -LRB- cord-001824-7c37elh6 33 27 18 18 CD cord-001824-7c37elh6 33 28 ) ) -RRB- cord-001824-7c37elh6 33 29 ( ( -LRB- cord-001824-7c37elh6 33 30 19 19 CD cord-001824-7c37elh6 33 31 ) ) -RRB- cord-001824-7c37elh6 33 32 ( ( -LRB- cord-001824-7c37elh6 33 33 20 20 CD cord-001824-7c37elh6 33 34 ) ) -RRB- cord-001824-7c37elh6 33 35 ( ( -LRB- cord-001824-7c37elh6 33 36 21 21 CD cord-001824-7c37elh6 33 37 ) ) -RRB- cord-001824-7c37elh6 33 38 ( ( -LRB- cord-001824-7c37elh6 33 39 22 22 CD cord-001824-7c37elh6 33 40 ) ) -RRB- cord-001824-7c37elh6 33 41 ( ( -LRB- cord-001824-7c37elh6 33 42 23 23 CD cord-001824-7c37elh6 33 43 ) ) -RRB- cord-001824-7c37elh6 33 44 ( ( -LRB- cord-001824-7c37elh6 33 45 24 24 CD cord-001824-7c37elh6 33 46 ) ) -RRB- cord-001824-7c37elh6 33 47 . . . cord-001824-7c37elh6 34 1 According accord VBG cord-001824-7c37elh6 34 2 to to IN cord-001824-7c37elh6 34 3 this this DT cord-001824-7c37elh6 34 4 model model NN cord-001824-7c37elh6 34 5 ( ( -LRB- cord-001824-7c37elh6 34 6 Figure figure NN cord-001824-7c37elh6 34 7 1 1 CD cord-001824-7c37elh6 34 8 ) ) -RRB- cord-001824-7c37elh6 34 9 modification modification NN cord-001824-7c37elh6 34 10 deficient deficient JJ cord-001824-7c37elh6 34 11 aminoacyl aminoacyl NNP cord-001824-7c37elh6 34 12 - - HYPH cord-001824-7c37elh6 34 13 tRNAs trna NNS cord-001824-7c37elh6 34 14 present present JJ cord-001824-7c37elh6 34 15 Dual dual JJ cord-001824-7c37elh6 34 16 - - HYPH cord-001824-7c37elh6 34 17 error error NN cord-001824-7c37elh6 34 18 frameshifting frameshifting NN cord-001824-7c37elh6 34 19 model model NN cord-001824-7c37elh6 34 20 . . . cord-001824-7c37elh6 35 1 Modification modification NN cord-001824-7c37elh6 35 2 deficient deficient JJ cord-001824-7c37elh6 35 3 tRNAs trna NNS cord-001824-7c37elh6 35 4 can can MD cord-001824-7c37elh6 35 5 induce induce VB cord-001824-7c37elh6 35 6 frameshifting frameshifte VBG cord-001824-7c37elh6 35 7 by by IN cord-001824-7c37elh6 35 8 either either CC cord-001824-7c37elh6 35 9 an an DT cord-001824-7c37elh6 35 10 A A NNP cord-001824-7c37elh6 35 11 - - : cord-001824-7c37elh6 35 12 or or CC cord-001824-7c37elh6 35 13 a a DT cord-001824-7c37elh6 35 14 P p NN cord-001824-7c37elh6 35 15 - - HYPH cord-001824-7c37elh6 35 16 site site NN cord-001824-7c37elh6 35 17 effect effect NN cord-001824-7c37elh6 35 18 , , , cord-001824-7c37elh6 35 19 or or CC cord-001824-7c37elh6 35 20 a a DT cord-001824-7c37elh6 35 21 combination combination NN cord-001824-7c37elh6 35 22 thereof thereof RB cord-001824-7c37elh6 35 23 . . . cord-001824-7c37elh6 36 1 ( ( -LRB- cord-001824-7c37elh6 36 2 A a DT cord-001824-7c37elh6 36 3 ) ) -RRB- cord-001824-7c37elh6 36 4 Lack lack NN cord-001824-7c37elh6 36 5 of of IN cord-001824-7c37elh6 36 6 wobble wobble NN cord-001824-7c37elh6 36 7 uridine uridine JJ cord-001824-7c37elh6 36 8 modification modification NN cord-001824-7c37elh6 36 9 reduces reduce VBZ cord-001824-7c37elh6 36 10 the the DT cord-001824-7c37elh6 36 11 efficiency efficiency NN cord-001824-7c37elh6 36 12 of of IN cord-001824-7c37elh6 36 13 the the DT cord-001824-7c37elh6 36 14 ternary ternary JJ cord-001824-7c37elh6 36 15 complex complex NN cord-001824-7c37elh6 36 16 ( ( -LRB- cord-001824-7c37elh6 36 17 aminoacyl aminoacyl VBN cord-001824-7c37elh6 36 18 - - HYPH cord-001824-7c37elh6 36 19 tRNA*eEF1A*GTP trna*eef1a*gtp NN cord-001824-7c37elh6 36 20 , , , cord-001824-7c37elh6 36 21 here here RB cord-001824-7c37elh6 36 22 shorten shorten VB cord-001824-7c37elh6 36 23 as as IN cord-001824-7c37elh6 36 24 aminoacyl aminoacyl NNP cord-001824-7c37elh6 36 25 - - HYPH cord-001824-7c37elh6 36 26 tRNA trna NN cord-001824-7c37elh6 36 27 ) ) -RRB- cord-001824-7c37elh6 36 28 to to TO cord-001824-7c37elh6 36 29 be be VB cord-001824-7c37elh6 36 30 accepted accept VBN cord-001824-7c37elh6 36 31 to to IN cord-001824-7c37elh6 36 32 the the DT cord-001824-7c37elh6 36 33 A A NNP cord-001824-7c37elh6 36 34 - - HYPH cord-001824-7c37elh6 36 35 site site NN cord-001824-7c37elh6 36 36 , , , cord-001824-7c37elh6 36 37 allowing allow VBG cord-001824-7c37elh6 36 38 a a DT cord-001824-7c37elh6 36 39 near near JJ cord-001824-7c37elh6 36 40 cognate cognate JJ cord-001824-7c37elh6 36 41 aminoacyl aminoacyl NNP cord-001824-7c37elh6 36 42 - - HYPH cord-001824-7c37elh6 36 43 tRNA trna NN cord-001824-7c37elh6 36 44 to to TO cord-001824-7c37elh6 36 45 be be VB cord-001824-7c37elh6 36 46 accepted accept VBN cord-001824-7c37elh6 36 47 in in IN cord-001824-7c37elh6 36 48 the the DT cord-001824-7c37elh6 36 49 A A NNP cord-001824-7c37elh6 36 50 - - HYPH cord-001824-7c37elh6 36 51 site site NN cord-001824-7c37elh6 36 52 . . . cord-001824-7c37elh6 37 1 After after IN cord-001824-7c37elh6 37 2 translocation translocation NN cord-001824-7c37elh6 37 3 to to IN cord-001824-7c37elh6 37 4 the the DT cord-001824-7c37elh6 37 5 P p NN cord-001824-7c37elh6 37 6 - - HYPH cord-001824-7c37elh6 37 7 site site NN cord-001824-7c37elh6 37 8 , , , cord-001824-7c37elh6 37 9 the the DT cord-001824-7c37elh6 37 10 near near JJ cord-001824-7c37elh6 37 11 cognate cognate NNP cord-001824-7c37elh6 37 12 tRNA tRNA NNP cord-001824-7c37elh6 37 13 slips slip VBZ cord-001824-7c37elh6 37 14 into into IN cord-001824-7c37elh6 37 15 an an DT cord-001824-7c37elh6 37 16 alternative alternative JJ cord-001824-7c37elh6 37 17 reading reading NN cord-001824-7c37elh6 37 18 frame frame NN cord-001824-7c37elh6 37 19 , , , cord-001824-7c37elh6 37 20 as as IN cord-001824-7c37elh6 37 21 it -PRON- PRP cord-001824-7c37elh6 37 22 does do VBZ cord-001824-7c37elh6 37 23 not not RB cord-001824-7c37elh6 37 24 perfectly perfectly RB cord-001824-7c37elh6 37 25 fit fit VB cord-001824-7c37elh6 37 26 in in IN cord-001824-7c37elh6 37 27 the the DT cord-001824-7c37elh6 37 28 P p NN cord-001824-7c37elh6 37 29 - - HYPH cord-001824-7c37elh6 37 30 site site NN cord-001824-7c37elh6 37 31 . . . cord-001824-7c37elh6 38 1 ( ( -LRB- cord-001824-7c37elh6 38 2 B b NN cord-001824-7c37elh6 38 3 ) ) -RRB- cord-001824-7c37elh6 38 4 Lack lack NN cord-001824-7c37elh6 38 5 of of IN cord-001824-7c37elh6 38 6 wobble wobble NN cord-001824-7c37elh6 38 7 uridine uridine JJ cord-001824-7c37elh6 38 8 modification modification NN cord-001824-7c37elh6 38 9 reduces reduce VBZ cord-001824-7c37elh6 38 10 the the DT cord-001824-7c37elh6 38 11 efficiency efficiency NN cord-001824-7c37elh6 38 12 of of IN cord-001824-7c37elh6 38 13 the the DT cord-001824-7c37elh6 38 14 cognate cognate JJ cord-001824-7c37elh6 38 15 aminoacyl aminoacyl NNP cord-001824-7c37elh6 38 16 - - HYPH cord-001824-7c37elh6 38 17 tRNA trna NN cord-001824-7c37elh6 38 18 to to TO cord-001824-7c37elh6 38 19 be be VB cord-001824-7c37elh6 38 20 accepted accept VBN cord-001824-7c37elh6 38 21 to to IN cord-001824-7c37elh6 38 22 the the DT cord-001824-7c37elh6 38 23 A A NNP cord-001824-7c37elh6 38 24 - - HYPH cord-001824-7c37elh6 38 25 site site NN cord-001824-7c37elh6 38 26 , , , cord-001824-7c37elh6 38 27 which which WDT cord-001824-7c37elh6 38 28 induces induce VBZ cord-001824-7c37elh6 38 29 a a DT cord-001824-7c37elh6 38 30 pause pause NN cord-001824-7c37elh6 38 31 that that WDT cord-001824-7c37elh6 38 32 allows allow VBZ cord-001824-7c37elh6 38 33 the the DT cord-001824-7c37elh6 38 34 tRNA trna NN cord-001824-7c37elh6 38 35 in in IN cord-001824-7c37elh6 38 36 the the DT cord-001824-7c37elh6 38 37 P p NN cord-001824-7c37elh6 38 38 - - HYPH cord-001824-7c37elh6 38 39 site site NN cord-001824-7c37elh6 38 40 to to IN cord-001824-7c37elh6 38 41 frameshift frameshift VB cord-001824-7c37elh6 38 42 . . . cord-001824-7c37elh6 39 1 ( ( -LRB- cord-001824-7c37elh6 39 2 C C NNP cord-001824-7c37elh6 39 3 ) ) -RRB- cord-001824-7c37elh6 40 1 The the DT cord-001824-7c37elh6 40 2 hypomodified hypomodifie VBN cord-001824-7c37elh6 40 3 aminoacyl aminoacyl NNP cord-001824-7c37elh6 40 4 - - HYPH cord-001824-7c37elh6 40 5 tRNA tRNA NNP cord-001824-7c37elh6 40 6 is be VBZ cord-001824-7c37elh6 40 7 able able JJ cord-001824-7c37elh6 40 8 to to TO cord-001824-7c37elh6 40 9 enter enter VB cord-001824-7c37elh6 40 10 the the DT cord-001824-7c37elh6 40 11 A A NNP cord-001824-7c37elh6 40 12 - - HYPH cord-001824-7c37elh6 40 13 site site NN cord-001824-7c37elh6 40 14 and and CC cord-001824-7c37elh6 40 15 translocate translocate VB cord-001824-7c37elh6 40 16 to to IN cord-001824-7c37elh6 40 17 the the DT cord-001824-7c37elh6 40 18 P p NN cord-001824-7c37elh6 40 19 - - HYPH cord-001824-7c37elh6 40 20 site site NN cord-001824-7c37elh6 40 21 where where WRB cord-001824-7c37elh6 40 22 it -PRON- PRP cord-001824-7c37elh6 40 23 then then RB cord-001824-7c37elh6 40 24 slips slip VBZ cord-001824-7c37elh6 40 25 into into IN cord-001824-7c37elh6 40 26 an an DT cord-001824-7c37elh6 40 27 alternative alternative JJ cord-001824-7c37elh6 40 28 reading reading NN cord-001824-7c37elh6 40 29 frame frame NN cord-001824-7c37elh6 40 30 due due IN cord-001824-7c37elh6 40 31 to to IN cord-001824-7c37elh6 40 32 a a DT cord-001824-7c37elh6 40 33 reduced reduce VBN cord-001824-7c37elh6 40 34 ribosomal ribosomal JJ cord-001824-7c37elh6 40 35 grip grip NN cord-001824-7c37elh6 40 36 . . . cord-001824-7c37elh6 41 1 in in IN cord-001824-7c37elh6 41 2 a a DT cord-001824-7c37elh6 41 3 ternary ternary JJ cord-001824-7c37elh6 41 4 complex complex NN cord-001824-7c37elh6 41 5 , , , cord-001824-7c37elh6 41 6 i.e. i.e. FW cord-001824-7c37elh6 41 7 aminoacyl aminoacyl VBN cord-001824-7c37elh6 41 8 - - HYPH cord-001824-7c37elh6 41 9 tRNA*eEF1A*GTP tRNA*eEF1A*GTP NNP cord-001824-7c37elh6 41 10 ( ( -LRB- cord-001824-7c37elh6 41 11 here here RB cord-001824-7c37elh6 41 12 shorten shorten VBN cord-001824-7c37elh6 41 13 as as IN cord-001824-7c37elh6 41 14 aminoacyl aminoacyl NNP cord-001824-7c37elh6 41 15 - - HYPH cord-001824-7c37elh6 41 16 tRNA tRNA NNP cord-001824-7c37elh6 41 17 ) ) -RRB- cord-001824-7c37elh6 41 18 induces induce VBZ cord-001824-7c37elh6 41 19 frameshifts frameshifts NNP cord-001824-7c37elh6 41 20 either either CC cord-001824-7c37elh6 41 21 by by IN cord-001824-7c37elh6 41 22 causing cause VBG cord-001824-7c37elh6 41 23 an an DT cord-001824-7c37elh6 41 24 A A NNP cord-001824-7c37elh6 41 25 - - : cord-001824-7c37elh6 41 26 or or CC cord-001824-7c37elh6 41 27 a a DT cord-001824-7c37elh6 41 28 P p NN cord-001824-7c37elh6 41 29 - - HYPH cord-001824-7c37elh6 41 30 site site NN cord-001824-7c37elh6 41 31 effect effect NN cord-001824-7c37elh6 41 32 , , , cord-001824-7c37elh6 41 33 or or CC cord-001824-7c37elh6 41 34 a a DT cord-001824-7c37elh6 41 35 combination combination NN cord-001824-7c37elh6 41 36 thereof thereof RB cord-001824-7c37elh6 41 37 . . . cord-001824-7c37elh6 42 1 Lack lack NN cord-001824-7c37elh6 42 2 of of IN cord-001824-7c37elh6 42 3 modification modification NN cord-001824-7c37elh6 42 4 causes cause VBZ cord-001824-7c37elh6 42 5 a a DT cord-001824-7c37elh6 42 6 defect defect NN cord-001824-7c37elh6 42 7 in in IN cord-001824-7c37elh6 42 8 the the DT cord-001824-7c37elh6 42 9 cognate cognate JJ cord-001824-7c37elh6 42 10 aminoacyl aminoacyl NNP cord-001824-7c37elh6 42 11 - - HYPH cord-001824-7c37elh6 42 12 tRNA trna NN cord-001824-7c37elh6 42 13 selection selection NN cord-001824-7c37elh6 42 14 step step NN cord-001824-7c37elh6 42 15 ( ( -LRB- cord-001824-7c37elh6 42 16 we -PRON- PRP cord-001824-7c37elh6 42 17 denote denote VBP cord-001824-7c37elh6 42 18 such such PDT cord-001824-7c37elh6 42 19 an an DT cord-001824-7c37elh6 42 20 error error NN cord-001824-7c37elh6 42 21 as as IN cord-001824-7c37elh6 42 22 an an DT cord-001824-7c37elh6 42 23 A a CD cord-001824-7c37elh6 42 24 - - HYPH cord-001824-7c37elh6 42 25 site site NN cord-001824-7c37elh6 42 26 effect effect NN cord-001824-7c37elh6 42 27 by by IN cord-001824-7c37elh6 42 28 modification modification NN cord-001824-7c37elh6 42 29 deficiency deficiency NN cord-001824-7c37elh6 42 30 ) ) -RRB- cord-001824-7c37elh6 42 31 , , , cord-001824-7c37elh6 42 32 allowing allow VBG cord-001824-7c37elh6 42 33 a a DT cord-001824-7c37elh6 42 34 ternary ternary JJ cord-001824-7c37elh6 42 35 complex complex NN cord-001824-7c37elh6 42 36 with with IN cord-001824-7c37elh6 42 37 a a DT cord-001824-7c37elh6 42 38 near near JJ cord-001824-7c37elh6 42 39 cognate cognate JJ cord-001824-7c37elh6 42 40 wild wild JJ cord-001824-7c37elh6 42 41 type type NN cord-001824-7c37elh6 42 42 aminoacyl aminoacyl NNP cord-001824-7c37elh6 42 43 - - : cord-001824-7c37elh6 42 44 tRNA tRNA NNP cord-001824-7c37elh6 42 45 instead instead RB cord-001824-7c37elh6 42 46 of of IN cord-001824-7c37elh6 42 47 a a DT cord-001824-7c37elh6 42 48 cognate cognate JJ cord-001824-7c37elh6 42 49 aminoacyl aminoacyl NNP cord-001824-7c37elh6 42 50 - - HYPH cord-001824-7c37elh6 42 51 tRNA trna NN cord-001824-7c37elh6 42 52 to to TO cord-001824-7c37elh6 42 53 be be VB cord-001824-7c37elh6 42 54 accepted accept VBN cord-001824-7c37elh6 42 55 in in IN cord-001824-7c37elh6 42 56 the the DT cord-001824-7c37elh6 42 57 A A NNP cord-001824-7c37elh6 42 58 - - HYPH cord-001824-7c37elh6 42 59 site site NN cord-001824-7c37elh6 42 60 . . . cord-001824-7c37elh6 43 1 After after IN cord-001824-7c37elh6 43 2 translocation translocation NN cord-001824-7c37elh6 43 3 to to IN cord-001824-7c37elh6 43 4 the the DT cord-001824-7c37elh6 43 5 P p NN cord-001824-7c37elh6 43 6 - - HYPH cord-001824-7c37elh6 43 7 site site NN cord-001824-7c37elh6 43 8 , , , cord-001824-7c37elh6 43 9 the the DT cord-001824-7c37elh6 43 10 fit fit NN cord-001824-7c37elh6 43 11 of of IN cord-001824-7c37elh6 43 12 the the DT cord-001824-7c37elh6 43 13 near near JJ cord-001824-7c37elh6 43 14 cognate cognate JJ cord-001824-7c37elh6 43 15 peptidyl peptidyl NNP cord-001824-7c37elh6 43 16 - - HYPH cord-001824-7c37elh6 43 17 tRNA tRNA NNP cord-001824-7c37elh6 43 18 is be VBZ cord-001824-7c37elh6 43 19 not not RB cord-001824-7c37elh6 43 20 optimal optimal JJ cord-001824-7c37elh6 43 21 why why WRB cord-001824-7c37elh6 43 22 it -PRON- PRP cord-001824-7c37elh6 43 23 slips slip VBZ cord-001824-7c37elh6 43 24 one one CD cord-001824-7c37elh6 43 25 nucleotide nucleotide NN cord-001824-7c37elh6 43 26 forward forward RB cord-001824-7c37elh6 44 1 ( ( -LRB- cord-001824-7c37elh6 44 2 +1 +1 XX cord-001824-7c37elh6 44 3 frameshift frameshift NN cord-001824-7c37elh6 44 4 ) ) -RRB- cord-001824-7c37elh6 44 5 ( ( -LRB- cord-001824-7c37elh6 44 6 Figure figure NN cord-001824-7c37elh6 44 7 1A 1a NN cord-001824-7c37elh6 44 8 ) ) -RRB- cord-001824-7c37elh6 44 9 . . . cord-001824-7c37elh6 45 1 Alternatively alternatively RB cord-001824-7c37elh6 45 2 , , , cord-001824-7c37elh6 45 3 lack lack NN cord-001824-7c37elh6 45 4 of of IN cord-001824-7c37elh6 45 5 a a DT cord-001824-7c37elh6 45 6 modified modified JJ cord-001824-7c37elh6 45 7 nucleoside nucleoside NN cord-001824-7c37elh6 45 8 reduces reduce VBZ cord-001824-7c37elh6 45 9 the the DT cord-001824-7c37elh6 45 10 efficiency efficiency NN cord-001824-7c37elh6 45 11 by by IN cord-001824-7c37elh6 45 12 which which WDT cord-001824-7c37elh6 45 13 a a DT cord-001824-7c37elh6 45 14 cognate cognate JJ cord-001824-7c37elh6 45 15 aminoacyl aminoacyl NNP cord-001824-7c37elh6 45 16 - - HYPH cord-001824-7c37elh6 45 17 tRNA tRNA NNP cord-001824-7c37elh6 45 18 is be VBZ cord-001824-7c37elh6 45 19 accepted accept VBN cord-001824-7c37elh6 45 20 to to IN cord-001824-7c37elh6 45 21 the the DT cord-001824-7c37elh6 45 22 Asite Asite NNP cord-001824-7c37elh6 45 23 , , , cord-001824-7c37elh6 45 24 which which WDT cord-001824-7c37elh6 45 25 induces induce VBZ cord-001824-7c37elh6 45 26 a a DT cord-001824-7c37elh6 45 27 ribosomal ribosomal NN cord-001824-7c37elh6 45 28 pause pause NN cord-001824-7c37elh6 45 29 allowing allow VBG cord-001824-7c37elh6 45 30 the the DT cord-001824-7c37elh6 45 31 wild wild JJ cord-001824-7c37elh6 45 32 type type NN cord-001824-7c37elh6 45 33 peptidyl peptidyl NNP cord-001824-7c37elh6 45 34 - - HYPH cord-001824-7c37elh6 45 35 tRNA tRNA NNP cord-001824-7c37elh6 45 36 to to TO cord-001824-7c37elh6 45 37 slip slip VB cord-001824-7c37elh6 45 38 forward forward RB cord-001824-7c37elh6 45 39 one one CD cord-001824-7c37elh6 45 40 nucleotide nucleotide NN cord-001824-7c37elh6 45 41 ( ( -LRB- cord-001824-7c37elh6 45 42 denoted denote VBD cord-001824-7c37elh6 45 43 an an DT cord-001824-7c37elh6 45 44 A A NNP cord-001824-7c37elh6 45 45 - - HYPH cord-001824-7c37elh6 45 46 site site NN cord-001824-7c37elh6 45 47 effect effect NN cord-001824-7c37elh6 45 48 by by IN cord-001824-7c37elh6 45 49 modification modification NN cord-001824-7c37elh6 45 50 deficiency deficiency NN cord-001824-7c37elh6 45 51 , , , cord-001824-7c37elh6 45 52 Figure figure NN cord-001824-7c37elh6 45 53 1B 1b CD cord-001824-7c37elh6 45 54 ) ) -RRB- cord-001824-7c37elh6 45 55 . . . cord-001824-7c37elh6 46 1 When when WRB cord-001824-7c37elh6 46 2 frameshifting frameshifting NN cord-001824-7c37elh6 46 3 is be VBZ cord-001824-7c37elh6 46 4 caused cause VBN cord-001824-7c37elh6 46 5 by by IN cord-001824-7c37elh6 46 6 a a DT cord-001824-7c37elh6 46 7 P p NN cord-001824-7c37elh6 46 8 - - HYPH cord-001824-7c37elh6 46 9 site site NN cord-001824-7c37elh6 46 10 effect effect NN cord-001824-7c37elh6 46 11 , , , cord-001824-7c37elh6 46 12 the the DT cord-001824-7c37elh6 46 13 hypomodified hypomodifie VBN cord-001824-7c37elh6 46 14 tRNA tRNA NNP cord-001824-7c37elh6 46 15 is be VBZ cord-001824-7c37elh6 46 16 efficiently efficiently RB cord-001824-7c37elh6 46 17 accepted accept VBN cord-001824-7c37elh6 46 18 to to IN cord-001824-7c37elh6 46 19 the the DT cord-001824-7c37elh6 46 20 A A NNP cord-001824-7c37elh6 46 21 - - HYPH cord-001824-7c37elh6 46 22 site site NN cord-001824-7c37elh6 46 23 , , , cord-001824-7c37elh6 46 24 translocates translocate VBZ cord-001824-7c37elh6 46 25 to to IN cord-001824-7c37elh6 46 26 the the DT cord-001824-7c37elh6 46 27 P p NN cord-001824-7c37elh6 46 28 - - HYPH cord-001824-7c37elh6 46 29 site site NN cord-001824-7c37elh6 46 30 where where WRB cord-001824-7c37elh6 46 31 its -PRON- PRP$ cord-001824-7c37elh6 46 32 fit fit NN cord-001824-7c37elh6 46 33 is be VBZ cord-001824-7c37elh6 46 34 not not RB cord-001824-7c37elh6 46 35 optimal optimal JJ cord-001824-7c37elh6 46 36 why why WRB cord-001824-7c37elh6 46 37 it -PRON- PRP cord-001824-7c37elh6 46 38 slips slip VBZ cord-001824-7c37elh6 46 39 into into IN cord-001824-7c37elh6 46 40 an an DT cord-001824-7c37elh6 46 41 alternative alternative JJ cord-001824-7c37elh6 46 42 reading reading NN cord-001824-7c37elh6 46 43 frame frame NN cord-001824-7c37elh6 46 44 due due IN cord-001824-7c37elh6 46 45 to to IN cord-001824-7c37elh6 46 46 a a DT cord-001824-7c37elh6 46 47 reduced reduce VBN cord-001824-7c37elh6 46 48 ribosomal ribosomal JJ cord-001824-7c37elh6 46 49 grip grip NN cord-001824-7c37elh6 46 50 ( ( -LRB- cord-001824-7c37elh6 46 51 P p NN cord-001824-7c37elh6 46 52 - - HYPH cord-001824-7c37elh6 46 53 site site NN cord-001824-7c37elh6 46 54 effect effect NN cord-001824-7c37elh6 46 55 by by IN cord-001824-7c37elh6 46 56 modification modification NN cord-001824-7c37elh6 46 57 deficiency deficiency NN cord-001824-7c37elh6 46 58 , , , cord-001824-7c37elh6 46 59 Figure figure NN cord-001824-7c37elh6 46 60 1C 1c NN cord-001824-7c37elh6 46 61 ) ) -RRB- cord-001824-7c37elh6 47 1 ( ( -LRB- cord-001824-7c37elh6 47 2 3,6,20,21,23 3,6,20,21,23 RB cord-001824-7c37elh6 47 3 ) ) -RRB- cord-001824-7c37elh6 47 4 . . . cord-001824-7c37elh6 48 1 Thus thus RB cord-001824-7c37elh6 48 2 , , , cord-001824-7c37elh6 48 3 in in IN cord-001824-7c37elh6 48 4 some some DT cord-001824-7c37elh6 48 5 cases case NNS cord-001824-7c37elh6 48 6 , , , cord-001824-7c37elh6 48 7 the the DT cord-001824-7c37elh6 48 8 modification modification NN cord-001824-7c37elh6 48 9 deficiency deficiency NN cord-001824-7c37elh6 48 10 reduces reduce VBZ cord-001824-7c37elh6 48 11 the the DT cord-001824-7c37elh6 48 12 rate rate NN cord-001824-7c37elh6 48 13 of of IN cord-001824-7c37elh6 48 14 selection selection NN cord-001824-7c37elh6 48 15 of of IN cord-001824-7c37elh6 48 16 the the DT cord-001824-7c37elh6 48 17 aminoacyl aminoacyl NNP cord-001824-7c37elh6 48 18 - - HYPH cord-001824-7c37elh6 48 19 tRNA trna NN cord-001824-7c37elh6 48 20 ( ( -LRB- cord-001824-7c37elh6 48 21 A a DT cord-001824-7c37elh6 48 22 - - HYPH cord-001824-7c37elh6 48 23 site site NN cord-001824-7c37elh6 48 24 effect effect NN cord-001824-7c37elh6 48 25 ) ) -RRB- cord-001824-7c37elh6 48 26 but but CC cord-001824-7c37elh6 48 27 also also RB cord-001824-7c37elh6 48 28 lack lack NN cord-001824-7c37elh6 48 29 of of IN cord-001824-7c37elh6 48 30 the the DT cord-001824-7c37elh6 48 31 modification modification NN cord-001824-7c37elh6 48 32 reduces reduce VBZ cord-001824-7c37elh6 48 33 the the DT cord-001824-7c37elh6 48 34 ribosomal ribosomal JJ cord-001824-7c37elh6 48 35 grip grip NN cord-001824-7c37elh6 48 36 in in IN cord-001824-7c37elh6 48 37 the the DT cord-001824-7c37elh6 48 38 P p NN cord-001824-7c37elh6 48 39 - - HYPH cord-001824-7c37elh6 48 40 site site NN cord-001824-7c37elh6 48 41 ( ( -LRB- cord-001824-7c37elh6 48 42 P p NN cord-001824-7c37elh6 48 43 - - HYPH cord-001824-7c37elh6 48 44 site site NN cord-001824-7c37elh6 48 45 effect effect NN cord-001824-7c37elh6 48 46 ) ) -RRB- cord-001824-7c37elh6 48 47 . . . cord-001824-7c37elh6 49 1 Note note VB cord-001824-7c37elh6 49 2 , , , cord-001824-7c37elh6 49 3 in in IN cord-001824-7c37elh6 49 4 all all DT cord-001824-7c37elh6 49 5 cases case NNS cord-001824-7c37elh6 49 6 explained explain VBN cord-001824-7c37elh6 49 7 above above RB cord-001824-7c37elh6 49 8 , , , cord-001824-7c37elh6 49 9 the the DT cord-001824-7c37elh6 49 10 error error NN cord-001824-7c37elh6 49 11 in in IN cord-001824-7c37elh6 49 12 reading read VBG cord-001824-7c37elh6 49 13 frame frame NN cord-001824-7c37elh6 49 14 maintenance maintenance NN cord-001824-7c37elh6 49 15 is be VBZ cord-001824-7c37elh6 49 16 due due JJ cord-001824-7c37elh6 49 17 to to IN cord-001824-7c37elh6 49 18 a a DT cord-001824-7c37elh6 49 19 peptidyl peptidyl NN cord-001824-7c37elh6 49 20 - - HYPH cord-001824-7c37elh6 49 21 tRNA trna NN cord-001824-7c37elh6 49 22 slippage slippage NN cord-001824-7c37elh6 49 23 . . . cord-001824-7c37elh6 50 1 Modifications modification NNS cord-001824-7c37elh6 50 2 of of IN cord-001824-7c37elh6 50 3 uridines uridine NNS cord-001824-7c37elh6 50 4 in in IN cord-001824-7c37elh6 50 5 the the DT cord-001824-7c37elh6 50 6 wobble wobble NN cord-001824-7c37elh6 50 7 position position NN cord-001824-7c37elh6 50 8 of of IN cord-001824-7c37elh6 50 9 tRNAs trna NNS cord-001824-7c37elh6 50 10 are be VBP cord-001824-7c37elh6 50 11 frequent frequent JJ cord-001824-7c37elh6 50 12 in in IN cord-001824-7c37elh6 50 13 all all DT cord-001824-7c37elh6 50 14 three three CD cord-001824-7c37elh6 50 15 domains domain NNS cord-001824-7c37elh6 50 16 of of IN cord-001824-7c37elh6 50 17 life life NN cord-001824-7c37elh6 50 18 . . . cord-001824-7c37elh6 51 1 In in IN cord-001824-7c37elh6 51 2 Saccharomyces saccharomyce NNS cord-001824-7c37elh6 51 3 cerevisiae cerevisiae NNS cord-001824-7c37elh6 51 4 , , , cord-001824-7c37elh6 51 5 there there EX cord-001824-7c37elh6 51 6 are be VBP cord-001824-7c37elh6 51 7 11 11 CD cord-001824-7c37elh6 51 8 tRNA tRNA NNP cord-001824-7c37elh6 51 9 species specie NNS cord-001824-7c37elh6 51 10 having have VBG cord-001824-7c37elh6 51 11 four four CD cord-001824-7c37elh6 51 12 related relate VBN cord-001824-7c37elh6 51 13 modified modify VBN cord-001824-7c37elh6 51 14 uridine uridine NN cord-001824-7c37elh6 51 15 nucleotides nucleotide NNS cord-001824-7c37elh6 51 16 at at IN cord-001824-7c37elh6 51 17 wobble wobble NN cord-001824-7c37elh6 51 18 position position NN cord-001824-7c37elh6 51 19 ( ( -LRB- cord-001824-7c37elh6 51 20 25 25 CD cord-001824-7c37elh6 51 21 ) ) -RRB- cord-001824-7c37elh6 51 22 ( ( -LRB- cord-001824-7c37elh6 51 23 26 26 CD cord-001824-7c37elh6 51 24 ) ) -RRB- cord-001824-7c37elh6 51 25 ( ( -LRB- cord-001824-7c37elh6 51 26 27 27 CD cord-001824-7c37elh6 51 27 ) ) -RRB- cord-001824-7c37elh6 51 28 ( ( -LRB- cord-001824-7c37elh6 51 29 28 28 CD cord-001824-7c37elh6 51 30 ) ) -RRB- cord-001824-7c37elh6 51 31 ( ( -LRB- cord-001824-7c37elh6 51 32 29 29 CD cord-001824-7c37elh6 51 33 ) ) -RRB- cord-001824-7c37elh6 51 34 ( ( -LRB- cord-001824-7c37elh6 51 35 30 30 CD cord-001824-7c37elh6 51 36 ) ) -RRB- cord-001824-7c37elh6 51 37 ( ( -LRB- cord-001824-7c37elh6 51 38 31 31 CD cord-001824-7c37elh6 51 39 ) ) -RRB- cord-001824-7c37elh6 51 40 ( ( -LRB- cord-001824-7c37elh6 51 41 32 32 CD cord-001824-7c37elh6 51 42 ) ) -RRB- cord-001824-7c37elh6 51 43 . . . cord-001824-7c37elh6 52 1 These these DT cord-001824-7c37elh6 52 2 modified modify VBN cord-001824-7c37elh6 52 3 nucleosides nucleoside NNS cord-001824-7c37elh6 52 4 are be VBP cord-001824-7c37elh6 53 1 5-carbamoylmethyluridine 5-carbamoylmethyluridine CD cord-001824-7c37elh6 53 2 ( ( -LRB- cord-001824-7c37elh6 53 3 ncm ncm NNP cord-001824-7c37elh6 53 4 5 5 CD cord-001824-7c37elh6 53 5 U U NNP cord-001824-7c37elh6 53 6 34 34 CD cord-001824-7c37elh6 53 7 ) ) -RRB- cord-001824-7c37elh6 53 8 present present JJ cord-001824-7c37elh6 53 9 in in IN cord-001824-7c37elh6 53 10 five five CD cord-001824-7c37elh6 53 11 ( ( -LRB- cord-001824-7c37elh6 53 12 26 26 CD cord-001824-7c37elh6 53 13 , , , cord-001824-7c37elh6 53 14 27 27 CD cord-001824-7c37elh6 53 15 , , , cord-001824-7c37elh6 53 16 32 32 CD cord-001824-7c37elh6 53 17 ) ) -RRB- cord-001824-7c37elh6 53 18 , , . cord-001824-7c37elh6 54 1 5-carbamoylmethyl-2 5-carbamoylmethyl-2 CD cord-001824-7c37elh6 54 2 -Omethyluridine -Omethyluridine . cord-001824-7c37elh6 55 1 ( ( -LRB- cord-001824-7c37elh6 55 2 ncm ncm NNP cord-001824-7c37elh6 55 3 5 5 CD cord-001824-7c37elh6 55 4 U U NNP cord-001824-7c37elh6 55 5 34 34 CD cord-001824-7c37elh6 55 6 m m NN cord-001824-7c37elh6 55 7 ) ) -RRB- cord-001824-7c37elh6 55 8 present present NN cord-001824-7c37elh6 55 9 in in IN cord-001824-7c37elh6 55 10 one one CD cord-001824-7c37elh6 55 11 ( ( -LRB- cord-001824-7c37elh6 55 12 25 25 CD cord-001824-7c37elh6 55 13 ) ) -RRB- cord-001824-7c37elh6 55 14 , , . cord-001824-7c37elh6 56 1 5methoxycarbonylmethyluridine 5methoxycarbonylmethyluridine LS cord-001824-7c37elh6 56 2 ( ( -LRB- cord-001824-7c37elh6 56 3 mcm mcm NNP cord-001824-7c37elh6 56 4 5 5 CD cord-001824-7c37elh6 56 5 U U NNP cord-001824-7c37elh6 56 6 34 34 CD cord-001824-7c37elh6 56 7 ) ) -RRB- cord-001824-7c37elh6 56 8 present present JJ cord-001824-7c37elh6 56 9 in in IN cord-001824-7c37elh6 56 10 two two CD cord-001824-7c37elh6 56 11 ( ( -LRB- cord-001824-7c37elh6 56 12 29 29 CD cord-001824-7c37elh6 56 13 , , , cord-001824-7c37elh6 56 14 30 30 CD cord-001824-7c37elh6 56 15 ) ) -RRB- cord-001824-7c37elh6 56 16 and and CC cord-001824-7c37elh6 56 17 5-methoxycarbonylmethyl-2-thiouridine 5-methoxycarbonylmethyl-2-thiouridine CD cord-001824-7c37elh6 56 18 ( ( -LRB- cord-001824-7c37elh6 56 19 mcm mcm NNP cord-001824-7c37elh6 56 20 5 5 CD cord-001824-7c37elh6 56 21 s s NN cord-001824-7c37elh6 56 22 2 2 CD cord-001824-7c37elh6 56 23 U U NNP cord-001824-7c37elh6 56 24 34 34 CD cord-001824-7c37elh6 56 25 ) ) -RRB- cord-001824-7c37elh6 56 26 present present JJ cord-001824-7c37elh6 56 27 in in IN cord-001824-7c37elh6 56 28 three three CD cord-001824-7c37elh6 56 29 tRNA tRNA NNP cord-001824-7c37elh6 56 30 species specie NNS cord-001824-7c37elh6 56 31 ( ( -LRB- cord-001824-7c37elh6 56 32 Figures figure NNS cord-001824-7c37elh6 56 33 2 2 CD cord-001824-7c37elh6 56 34 and and CC cord-001824-7c37elh6 56 35 3 3 LS cord-001824-7c37elh6 56 36 ) ) -RRB- cord-001824-7c37elh6 56 37 ( ( -LRB- cord-001824-7c37elh6 56 38 28 28 CD cord-001824-7c37elh6 56 39 , , , cord-001824-7c37elh6 56 40 30 30 CD cord-001824-7c37elh6 56 41 , , , cord-001824-7c37elh6 56 42 31 31 CD cord-001824-7c37elh6 56 43 ) ) -RRB- cord-001824-7c37elh6 56 44 . . . cord-001824-7c37elh6 57 1 The the DT cord-001824-7c37elh6 57 2 first first JJ cord-001824-7c37elh6 57 3 step step NN cord-001824-7c37elh6 57 4 in in IN cord-001824-7c37elh6 57 5 the the DT cord-001824-7c37elh6 57 6 synthesis synthesis NN cord-001824-7c37elh6 57 7 of of IN cord-001824-7c37elh6 57 8 the the DT cord-001824-7c37elh6 57 9 mcm mcm NNP cord-001824-7c37elh6 57 10 5 5 CD cord-001824-7c37elh6 57 11 and and CC cord-001824-7c37elh6 57 12 ncm ncm NNP cord-001824-7c37elh6 57 13 5 5 CD cord-001824-7c37elh6 57 14 groups group NNS cord-001824-7c37elh6 57 15 of of IN cord-001824-7c37elh6 57 16 the the DT cord-001824-7c37elh6 57 17 uridine uridine JJ cord-001824-7c37elh6 57 18 modifications modification NNS cord-001824-7c37elh6 57 19 mentioned mention VBN cord-001824-7c37elh6 57 20 above above RB cord-001824-7c37elh6 57 21 requires require VBZ cord-001824-7c37elh6 57 22 the the DT cord-001824-7c37elh6 57 23 six six CD cord-001824-7c37elh6 57 24 - - HYPH cord-001824-7c37elh6 57 25 subunit subunit NN cord-001824-7c37elh6 57 26 Elongator Elongator NNP cord-001824-7c37elh6 57 27 complex complex NN cord-001824-7c37elh6 57 28 and and CC cord-001824-7c37elh6 57 29 its -PRON- PRP$ cord-001824-7c37elh6 57 30 seven seven CD cord-001824-7c37elh6 57 31 as- as- DT cord-001824-7c37elh6 57 32 sociated sociate VBN cord-001824-7c37elh6 57 33 proteins protein NNS cord-001824-7c37elh6 57 34 ( ( -LRB- cord-001824-7c37elh6 57 35 Reviewed review VBN cord-001824-7c37elh6 57 36 in in IN cord-001824-7c37elh6 57 37 Karlsborn Karlsborn NNP cord-001824-7c37elh6 57 38 et et NNP cord-001824-7c37elh6 57 39 al al NNP cord-001824-7c37elh6 57 40 . . . cord-001824-7c37elh6 58 1 ( ( -LRB- cord-001824-7c37elh6 58 2 33 33 CD cord-001824-7c37elh6 58 3 ) ) -RRB- cord-001824-7c37elh6 58 4 ) ) -RRB- cord-001824-7c37elh6 58 5 . . . cord-001824-7c37elh6 59 1 Mutations mutation NNS cord-001824-7c37elh6 59 2 in in IN cord-001824-7c37elh6 59 3 any any DT cord-001824-7c37elh6 59 4 of of IN cord-001824-7c37elh6 59 5 the the DT cord-001824-7c37elh6 59 6 corresponding corresponding JJ cord-001824-7c37elh6 59 7 genes gene NNS cord-001824-7c37elh6 59 8 result result VBP cord-001824-7c37elh6 59 9 in in IN cord-001824-7c37elh6 59 10 deficiency deficiency NN cord-001824-7c37elh6 59 11 of of IN cord-001824-7c37elh6 59 12 these these DT cord-001824-7c37elh6 59 13 xm xm NNP cord-001824-7c37elh6 59 14 5 5 CD cord-001824-7c37elh6 59 15 -uridine -uridine SYM cord-001824-7c37elh6 59 16 modifications modification NNS cord-001824-7c37elh6 59 17 without without IN cord-001824-7c37elh6 59 18 affecting affect VBG cord-001824-7c37elh6 59 19 stability stability NN cord-001824-7c37elh6 59 20 or or CC cord-001824-7c37elh6 59 21 aminoacylation aminoacylation NN cord-001824-7c37elh6 59 22 of of IN cord-001824-7c37elh6 59 23 tRNA tRNA NNP cord-001824-7c37elh6 59 24 ( ( -LRB- cord-001824-7c37elh6 59 25 26 26 CD cord-001824-7c37elh6 59 26 ) ) -RRB- cord-001824-7c37elh6 59 27 . . . cord-001824-7c37elh6 60 1 These these DT cord-001824-7c37elh6 60 2 mutants mutant NNS cord-001824-7c37elh6 60 3 also also RB cord-001824-7c37elh6 60 4 show show VBP cord-001824-7c37elh6 60 5 strong strong JJ cord-001824-7c37elh6 60 6 pleiotropic pleiotropic JJ cord-001824-7c37elh6 60 7 phenotypes phenotype NNS cord-001824-7c37elh6 60 8 , , , cord-001824-7c37elh6 60 9 such such JJ cord-001824-7c37elh6 60 10 as as IN cord-001824-7c37elh6 60 11 defects defect NNS cord-001824-7c37elh6 60 12 in in IN cord-001824-7c37elh6 60 13 growth growth NN cord-001824-7c37elh6 60 14 , , , cord-001824-7c37elh6 60 15 transcription transcription NN cord-001824-7c37elh6 60 16 , , , cord-001824-7c37elh6 60 17 chromatin chromatin NN cord-001824-7c37elh6 60 18 remodelling remodelling NN cord-001824-7c37elh6 60 19 , , , cord-001824-7c37elh6 60 20 DNA dna NN cord-001824-7c37elh6 60 21 repair repair NN cord-001824-7c37elh6 60 22 and and CC cord-001824-7c37elh6 60 23 secretion secretion NN cord-001824-7c37elh6 60 24 ( ( -LRB- cord-001824-7c37elh6 60 25 Reviewed review VBN cord-001824-7c37elh6 60 26 in in IN cord-001824-7c37elh6 60 27 Karlsborn Karlsborn NNP cord-001824-7c37elh6 60 28 et et NNP cord-001824-7c37elh6 60 29 al al NNP cord-001824-7c37elh6 60 30 . . . cord-001824-7c37elh6 61 1 ( ( -LRB- cord-001824-7c37elh6 61 2 33 33 CD cord-001824-7c37elh6 61 3 ) ) -RRB- cord-001824-7c37elh6 61 4 ) ) -RRB- cord-001824-7c37elh6 61 5 . . . cord-001824-7c37elh6 62 1 All all PDT cord-001824-7c37elh6 62 2 these these DT cord-001824-7c37elh6 62 3 phenotypes phenotype NNS cord-001824-7c37elh6 62 4 , , , cord-001824-7c37elh6 62 5 except except IN cord-001824-7c37elh6 62 6 lack lack NN cord-001824-7c37elh6 62 7 of of IN cord-001824-7c37elh6 62 8 xm xm NNP cord-001824-7c37elh6 62 9 5 5 CD cord-001824-7c37elh6 62 10 side side NN cord-001824-7c37elh6 62 11 chains chain NNS cord-001824-7c37elh6 62 12 , , , cord-001824-7c37elh6 62 13 are be VBP cord-001824-7c37elh6 62 14 suppressed suppress VBN cord-001824-7c37elh6 62 15 by by IN cord-001824-7c37elh6 62 16 overexpression overexpression NN cord-001824-7c37elh6 62 17 of of IN cord-001824-7c37elh6 62 18 hypomodified hypomodified JJ cord-001824-7c37elh6 62 19 tRNAs trna NNS cord-001824-7c37elh6 62 20 specific specific JJ cord-001824-7c37elh6 62 21 for for IN cord-001824-7c37elh6 62 22 Gln Gln NNP cord-001824-7c37elh6 62 23 , , , cord-001824-7c37elh6 62 24 Lys Lys NNP cord-001824-7c37elh6 62 25 and and CC cord-001824-7c37elh6 62 26 Glu Glu NNP cord-001824-7c37elh6 62 27 that that IN cord-001824-7c37elh6 62 28 in in IN cord-001824-7c37elh6 62 29 a a DT cord-001824-7c37elh6 62 30 wild wild JJ cord-001824-7c37elh6 62 31 type type NN cord-001824-7c37elh6 62 32 contains contain VBZ cord-001824-7c37elh6 62 33 mcm mcm NNP cord-001824-7c37elh6 62 34 5 5 CD cord-001824-7c37elh6 62 35 s s NN cord-001824-7c37elh6 62 36 2 2 CD cord-001824-7c37elh6 62 37 U U NNP cord-001824-7c37elh6 62 38 34 34 CD cord-001824-7c37elh6 62 39 ( ( -LRB- cord-001824-7c37elh6 62 40 34 34 CD cord-001824-7c37elh6 62 41 , , , cord-001824-7c37elh6 62 42 35 35 CD cord-001824-7c37elh6 62 43 ) ) -RRB- cord-001824-7c37elh6 62 44 . . . cord-001824-7c37elh6 63 1 It -PRON- PRP cord-001824-7c37elh6 63 2 was be VBD cord-001824-7c37elh6 63 3 concluded conclude VBN cord-001824-7c37elh6 63 4 that that IN cord-001824-7c37elh6 63 5 lack lack NN cord-001824-7c37elh6 63 6 of of IN cord-001824-7c37elh6 63 7 this this DT cord-001824-7c37elh6 63 8 wobble wobble NN cord-001824-7c37elh6 63 9 nucleoside nucleoside RB cord-001824-7c37elh6 63 10 reduces reduce VBZ cord-001824-7c37elh6 63 11 the the DT cord-001824-7c37elh6 63 12 efficiency efficiency NN cord-001824-7c37elh6 63 13 to to TO cord-001824-7c37elh6 63 14 recognize recognize VB cord-001824-7c37elh6 63 15 the the DT cord-001824-7c37elh6 63 16 cognate cognate JJ cord-001824-7c37elh6 63 17 codons codon NNS cord-001824-7c37elh6 63 18 for for IN cord-001824-7c37elh6 63 19 these these DT cord-001824-7c37elh6 63 20 tR tR NNP cord-001824-7c37elh6 63 21 - - HYPH cord-001824-7c37elh6 63 22 NAs NAs NNPS cord-001824-7c37elh6 63 23 , , , cord-001824-7c37elh6 63 24 which which WDT cord-001824-7c37elh6 63 25 is be VBZ cord-001824-7c37elh6 63 26 compensated compensate VBN cord-001824-7c37elh6 63 27 by by IN cord-001824-7c37elh6 63 28 an an DT cord-001824-7c37elh6 63 29 increased increase VBN cord-001824-7c37elh6 63 30 concentration concentration NN cord-001824-7c37elh6 63 31 of of IN cord-001824-7c37elh6 63 32 the the DT cord-001824-7c37elh6 63 33 modification modification NN cord-001824-7c37elh6 63 34 deficient deficient JJ cord-001824-7c37elh6 63 35 tRNA tRNA NNP cord-001824-7c37elh6 63 36 . . . cord-001824-7c37elh6 64 1 Thus thus RB cord-001824-7c37elh6 64 2 , , , cord-001824-7c37elh6 64 3 the the DT cord-001824-7c37elh6 64 4 many many JJ cord-001824-7c37elh6 64 5 different different JJ cord-001824-7c37elh6 64 6 phenotypes phenotype NNS cord-001824-7c37elh6 64 7 of of IN cord-001824-7c37elh6 64 8 Elongator Elongator NNP cord-001824-7c37elh6 64 9 mutants mutant NNS cord-001824-7c37elh6 64 10 are be VBP cord-001824-7c37elh6 64 11 due due JJ cord-001824-7c37elh6 64 12 to to IN cord-001824-7c37elh6 64 13 reduced reduce VBN cord-001824-7c37elh6 64 14 efficiency efficiency NN cord-001824-7c37elh6 64 15 in in IN cord-001824-7c37elh6 64 16 translating translate VBG cord-001824-7c37elh6 64 17 some some DT cord-001824-7c37elh6 64 18 key key NN cord-001824-7c37elh6 64 19 mRNAs mrnas ADD cord-001824-7c37elh6 64 20 encoding encode VBG cord-001824-7c37elh6 64 21 proteins protein NNS cord-001824-7c37elh6 64 22 important important JJ cord-001824-7c37elh6 64 23 for for IN cord-001824-7c37elh6 64 24 manifesting manifest VBG cord-001824-7c37elh6 64 25 a a DT cord-001824-7c37elh6 64 26 correct correct JJ cord-001824-7c37elh6 64 27 phenotype phenotype NN cord-001824-7c37elh6 64 28 . . . cord-001824-7c37elh6 65 1 In in IN cord-001824-7c37elh6 65 2 bacteria bacteria NNS cord-001824-7c37elh6 65 3 , , , cord-001824-7c37elh6 65 4 modified modify VBN cord-001824-7c37elh6 65 5 wobble wobble NN cord-001824-7c37elh6 65 6 uridines uridine NNS cord-001824-7c37elh6 65 7 are be VBP cord-001824-7c37elh6 65 8 important important JJ cord-001824-7c37elh6 65 9 to to TO cord-001824-7c37elh6 65 10 prevent prevent VB cord-001824-7c37elh6 65 11 +1 +1 NNS cord-001824-7c37elh6 65 12 frameshifting frameshifting NN cord-001824-7c37elh6 65 13 ( ( -LRB- cord-001824-7c37elh6 65 14 6 6 CD cord-001824-7c37elh6 65 15 , , , cord-001824-7c37elh6 65 16 36 36 CD cord-001824-7c37elh6 65 17 ) ) -RRB- cord-001824-7c37elh6 65 18 . . . cord-001824-7c37elh6 66 1 In in IN cord-001824-7c37elh6 66 2 eukaryotes eukaryote NNS cord-001824-7c37elh6 66 3 , , , cord-001824-7c37elh6 66 4 only only RB cord-001824-7c37elh6 66 5 a a DT cord-001824-7c37elh6 66 6 limited limited JJ cord-001824-7c37elh6 66 7 study study NN cord-001824-7c37elh6 66 8 has have VBZ cord-001824-7c37elh6 66 9 been be VBN cord-001824-7c37elh6 66 10 done do VBN cord-001824-7c37elh6 66 11 , , , cord-001824-7c37elh6 66 12 which which WDT cord-001824-7c37elh6 66 13 focused focus VBD cord-001824-7c37elh6 66 14 on on IN cord-001824-7c37elh6 66 15 the the DT cord-001824-7c37elh6 66 16 influence influence NN cord-001824-7c37elh6 66 17 of of IN cord-001824-7c37elh6 66 18 the the DT cord-001824-7c37elh6 66 19 esterified esterify VBN cord-001824-7c37elh6 66 20 methyl methyl NN cord-001824-7c37elh6 66 21 group group NN cord-001824-7c37elh6 66 22 of of IN cord-001824-7c37elh6 66 23 mcm mcm NNP cord-001824-7c37elh6 66 24 5 5 CD cord-001824-7c37elh6 66 25 U U NNP cord-001824-7c37elh6 66 26 34 34 CD cord-001824-7c37elh6 66 27 in in IN cord-001824-7c37elh6 66 28 reading read VBG cord-001824-7c37elh6 66 29 frame frame NN cord-001824-7c37elh6 66 30 maintenance maintenance NN cord-001824-7c37elh6 66 31 ( ( -LRB- cord-001824-7c37elh6 66 32 37 37 CD cord-001824-7c37elh6 66 33 ) ) -RRB- cord-001824-7c37elh6 66 34 . . . cord-001824-7c37elh6 67 1 However however RB cord-001824-7c37elh6 67 2 , , , cord-001824-7c37elh6 67 3 no no DT cord-001824-7c37elh6 67 4 specific specific JJ cord-001824-7c37elh6 67 5 conclusion conclusion NN cord-001824-7c37elh6 67 6 was be VBD cord-001824-7c37elh6 67 7 made make VBN cord-001824-7c37elh6 67 8 where where WRB cord-001824-7c37elh6 67 9 the the DT cord-001824-7c37elh6 67 10 frameshift frameshift NN cord-001824-7c37elh6 67 11 errors error NNS cord-001824-7c37elh6 67 12 occur occur VBP cord-001824-7c37elh6 67 13 , , , cord-001824-7c37elh6 67 14 since since IN cord-001824-7c37elh6 67 15 the the DT cord-001824-7c37elh6 67 16 frameshift frameshift NN cord-001824-7c37elh6 67 17 window window NN cord-001824-7c37elh6 67 18 used use VBN cord-001824-7c37elh6 67 19 was be VBD cord-001824-7c37elh6 67 20 very very RB cord-001824-7c37elh6 67 21 large large JJ cord-001824-7c37elh6 67 22 . . . cord-001824-7c37elh6 68 1 Therefore therefore RB cord-001824-7c37elh6 68 2 , , , cord-001824-7c37elh6 68 3 no no DT cord-001824-7c37elh6 68 4 extensive extensive JJ cord-001824-7c37elh6 68 5 information information NN cord-001824-7c37elh6 68 6 of of IN cord-001824-7c37elh6 68 7 the the DT cord-001824-7c37elh6 68 8 role role NN cord-001824-7c37elh6 68 9 of of IN cord-001824-7c37elh6 68 10 modified modify VBN cord-001824-7c37elh6 68 11 wobble wobble NN cord-001824-7c37elh6 68 12 uridines uridine NNS cord-001824-7c37elh6 68 13 in in IN cord-001824-7c37elh6 68 14 reading read VBG cord-001824-7c37elh6 68 15 frame frame NN cord-001824-7c37elh6 68 16 maintenance maintenance NN cord-001824-7c37elh6 68 17 is be VBZ cord-001824-7c37elh6 68 18 available available JJ cord-001824-7c37elh6 68 19 for for IN cord-001824-7c37elh6 68 20 eukaryotic eukaryotic JJ cord-001824-7c37elh6 68 21 tRNA tRNA NNP cord-001824-7c37elh6 68 22 . . . cord-001824-7c37elh6 69 1 It -PRON- PRP cord-001824-7c37elh6 69 2 was be VBD cord-001824-7c37elh6 69 3 therefore therefore RB cord-001824-7c37elh6 69 4 important important JJ cord-001824-7c37elh6 69 5 to to TO cord-001824-7c37elh6 69 6 investigate investigate VB cord-001824-7c37elh6 69 7 whether whether IN cord-001824-7c37elh6 69 8 or or CC cord-001824-7c37elh6 69 9 not not RB cord-001824-7c37elh6 69 10 lack lack NN cord-001824-7c37elh6 69 11 of of IN cord-001824-7c37elh6 69 12 the the DT cord-001824-7c37elh6 69 13 xm xm NNP cord-001824-7c37elh6 69 14 5 5 CD cord-001824-7c37elh6 69 15 U U NNP cord-001824-7c37elh6 69 16 or or CC cord-001824-7c37elh6 69 17 mcm mcm NNP cord-001824-7c37elh6 69 18 5 5 CD cord-001824-7c37elh6 69 19 s s NN cord-001824-7c37elh6 69 20 2 2 CD cord-001824-7c37elh6 69 21 U U NNP cord-001824-7c37elh6 69 22 modifications modification NNS cord-001824-7c37elh6 69 23 are be VBP cord-001824-7c37elh6 69 24 crucial crucial JJ cord-001824-7c37elh6 69 25 for for IN cord-001824-7c37elh6 69 26 reading read VBG cord-001824-7c37elh6 69 27 frame frame NN cord-001824-7c37elh6 69 28 maintenance maintenance NN cord-001824-7c37elh6 69 29 . . . cord-001824-7c37elh6 70 1 Here here RB cord-001824-7c37elh6 70 2 , , , cord-001824-7c37elh6 70 3 we -PRON- PRP cord-001824-7c37elh6 70 4 show show VBP cord-001824-7c37elh6 70 5 that that IN cord-001824-7c37elh6 70 6 presence presence NN cord-001824-7c37elh6 70 7 of of IN cord-001824-7c37elh6 70 8 xm xm NNP cord-001824-7c37elh6 70 9 5 5 CD cord-001824-7c37elh6 70 10 -(x -(x NNP cord-001824-7c37elh6 70 11 , , , cord-001824-7c37elh6 70 12 any any DT cord-001824-7c37elh6 70 13 substitution substitution NN cord-001824-7c37elh6 70 14 ) ) -RRB- cord-001824-7c37elh6 70 15 or or CC cord-001824-7c37elh6 70 16 s s NN cord-001824-7c37elh6 70 17 2 2 CD cord-001824-7c37elh6 70 18 side side NN cord-001824-7c37elh6 70 19 groups group NNS cord-001824-7c37elh6 70 20 at at IN cord-001824-7c37elh6 70 21 wobble wobble VB cord-001824-7c37elh6 70 22 uridines uridine NNS cord-001824-7c37elh6 70 23 in in IN cord-001824-7c37elh6 70 24 yeast yeast NN cord-001824-7c37elh6 70 25 is be VBZ cord-001824-7c37elh6 70 26 pivotal pivotal JJ cord-001824-7c37elh6 70 27 in in IN cord-001824-7c37elh6 70 28 maintaining maintain VBG cord-001824-7c37elh6 70 29 the the DT cord-001824-7c37elh6 70 30 translational translational JJ cord-001824-7c37elh6 70 31 reading reading NN cord-001824-7c37elh6 70 32 frame frame NN cord-001824-7c37elh6 70 33 . . . cord-001824-7c37elh6 71 1 The the DT cord-001824-7c37elh6 71 2 source source NN cord-001824-7c37elh6 71 3 and and CC cord-001824-7c37elh6 71 4 genotypes genotype NNS cord-001824-7c37elh6 71 5 of of IN cord-001824-7c37elh6 71 6 yeast yeast NN cord-001824-7c37elh6 71 7 strains strain NNS cord-001824-7c37elh6 71 8 used use VBN cord-001824-7c37elh6 71 9 in in IN cord-001824-7c37elh6 71 10 this this DT cord-001824-7c37elh6 71 11 study study NN cord-001824-7c37elh6 71 12 are be VBP cord-001824-7c37elh6 71 13 listed list VBN cord-001824-7c37elh6 71 14 in in IN cord-001824-7c37elh6 71 15 Table Table NNP cord-001824-7c37elh6 71 16 1 1 CD cord-001824-7c37elh6 71 17 . . . cord-001824-7c37elh6 72 1 E. E. NNP cord-001824-7c37elh6 72 2 coli coli NNS cord-001824-7c37elh6 72 3 strain strain NN cord-001824-7c37elh6 72 4 used use VBN cord-001824-7c37elh6 72 5 was be VBD cord-001824-7c37elh6 72 6 DH5α DH5α NNP cord-001824-7c37elh6 72 7 ( ( -LRB- cord-001824-7c37elh6 72 8 Bethesda Bethesda NNP cord-001824-7c37elh6 72 9 Research Research NNP cord-001824-7c37elh6 72 10 Laboratories Laboratories NNP cord-001824-7c37elh6 72 11 ) ) -RRB- cord-001824-7c37elh6 72 12 . . . cord-001824-7c37elh6 73 1 Yeast yeast NN cord-001824-7c37elh6 73 2 transformation transformation NN cord-001824-7c37elh6 73 3 ( ( -LRB- cord-001824-7c37elh6 73 4 38 38 CD cord-001824-7c37elh6 73 5 ) ) -RRB- cord-001824-7c37elh6 73 6 , , , cord-001824-7c37elh6 73 7 media medium NNS cord-001824-7c37elh6 73 8 and and CC cord-001824-7c37elh6 73 9 genetic genetic JJ cord-001824-7c37elh6 73 10 procedures procedure NNS cord-001824-7c37elh6 73 11 have have VBP cord-001824-7c37elh6 73 12 been be VBN cord-001824-7c37elh6 73 13 described describe VBN cord-001824-7c37elh6 73 14 previously previously RB cord-001824-7c37elh6 73 15 ( ( -LRB- cord-001824-7c37elh6 73 16 39 39 CD cord-001824-7c37elh6 73 17 ) ) -RRB- cord-001824-7c37elh6 73 18 . . . cord-001824-7c37elh6 74 1 Plasmid Plasmid NNP cord-001824-7c37elh6 74 2 pJD375 pJD375 NNP cord-001824-7c37elh6 74 3 contains contain VBZ cord-001824-7c37elh6 74 4 a a DT cord-001824-7c37elh6 74 5 Renilla Renilla NNP cord-001824-7c37elh6 74 6 / / SYM cord-001824-7c37elh6 74 7 Firefly Firefly NNP cord-001824-7c37elh6 74 8 luciferase luciferase NN cord-001824-7c37elh6 74 9 bicistronic bicistronic JJ cord-001824-7c37elh6 74 10 reporter reporter NN cord-001824-7c37elh6 74 11 system system NN cord-001824-7c37elh6 74 12 ( ( -LRB- cord-001824-7c37elh6 74 13 40 40 CD cord-001824-7c37elh6 74 14 ) ) -RRB- cord-001824-7c37elh6 74 15 . . . cord-001824-7c37elh6 75 1 To to TO cord-001824-7c37elh6 75 2 introduce introduce VB cord-001824-7c37elh6 75 3 various various JJ cord-001824-7c37elh6 75 4 frameshifting frameshifte VBG cord-001824-7c37elh6 75 5 windows window NNS cord-001824-7c37elh6 75 6 between between IN cord-001824-7c37elh6 75 7 the the DT cord-001824-7c37elh6 75 8 luciferase luciferase NN cord-001824-7c37elh6 75 9 genes gene NNS cord-001824-7c37elh6 75 10 , , , cord-001824-7c37elh6 75 11 a a DT cord-001824-7c37elh6 75 12 BamHI BamHI NNP cord-001824-7c37elh6 75 13 - - HYPH cord-001824-7c37elh6 75 14 XhoI XhoI NNP cord-001824-7c37elh6 75 15 fragment fragment NN cord-001824-7c37elh6 75 16 from from IN cord-001824-7c37elh6 75 17 plasmid plasmid NNP cord-001824-7c37elh6 75 18 pJD375 pJD375 NNP cord-001824-7c37elh6 75 19 containing contain VBG cord-001824-7c37elh6 75 20 the the DT cord-001824-7c37elh6 75 21 Firefly Firefly NNP cord-001824-7c37elh6 75 22 luciferase luciferase NN cord-001824-7c37elh6 75 23 gene gene NN cord-001824-7c37elh6 75 24 was be VBD cord-001824-7c37elh6 75 25 cloned clone VBN cord-001824-7c37elh6 75 26 into into IN cord-001824-7c37elh6 75 27 corresponding correspond VBG cord-001824-7c37elh6 75 28 sites site NNS cord-001824-7c37elh6 75 29 of of IN cord-001824-7c37elh6 75 30 YCp50 YCp50 NNS cord-001824-7c37elh6 75 31 , , , cord-001824-7c37elh6 75 32 generating generate VBG cord-001824-7c37elh6 75 33 plasmid plasmid NN cord-001824-7c37elh6 75 34 YCp50-Firefly ycp50-firefly NN cord-001824-7c37elh6 75 35 . . . cord-001824-7c37elh6 76 1 Two two CD cord-001824-7c37elh6 76 2 complementary complementary JJ cord-001824-7c37elh6 76 3 oligonucleotides oligonucleotide NNS cord-001824-7c37elh6 76 4 carrying carry VBG cord-001824-7c37elh6 76 5 various various JJ cord-001824-7c37elh6 76 6 frameshifting frameshifte VBG cord-001824-7c37elh6 76 7 windows window NNS cord-001824-7c37elh6 76 8 ( ( -LRB- cord-001824-7c37elh6 76 9 see see VB cord-001824-7c37elh6 76 10 Supplementary Supplementary NNP cord-001824-7c37elh6 76 11 Table Table NNP cord-001824-7c37elh6 76 12 S1 S1 NNP cord-001824-7c37elh6 76 13 ) ) -RRB- cord-001824-7c37elh6 76 14 were be VBD cord-001824-7c37elh6 76 15 annealed anneal VBN cord-001824-7c37elh6 76 16 into into IN cord-001824-7c37elh6 76 17 the the DT cord-001824-7c37elh6 76 18 BamHI bamhi NN cord-001824-7c37elh6 76 19 and and CC cord-001824-7c37elh6 76 20 SacI SacI NNP cord-001824-7c37elh6 76 21 sites site NNS cord-001824-7c37elh6 76 22 of of IN cord-001824-7c37elh6 76 23 YCp50-Firefly YCp50-Firefly NNP cord-001824-7c37elh6 76 24 . . . cord-001824-7c37elh6 77 1 The the DT cord-001824-7c37elh6 77 2 newly newly RB cord-001824-7c37elh6 77 3 constructed construct VBN cord-001824-7c37elh6 77 4 plasmids plasmid NNS cord-001824-7c37elh6 77 5 were be VBD cord-001824-7c37elh6 77 6 digested digest VBN cord-001824-7c37elh6 77 7 with with IN cord-001824-7c37elh6 77 8 restriction restriction NN cord-001824-7c37elh6 77 9 enzymes enzyme NNS cord-001824-7c37elh6 77 10 ( ( -LRB- cord-001824-7c37elh6 77 11 BamHI BamHI NNP cord-001824-7c37elh6 77 12 and and CC cord-001824-7c37elh6 77 13 XhoI XhoI NNP cord-001824-7c37elh6 77 14 ) ) -RRB- cord-001824-7c37elh6 77 15 and and CC cord-001824-7c37elh6 77 16 fragments fragment NNS cord-001824-7c37elh6 77 17 containing contain VBG cord-001824-7c37elh6 77 18 the the DT cord-001824-7c37elh6 77 19 frameshifting frameshifte VBG cord-001824-7c37elh6 77 20 sites site NNS cord-001824-7c37elh6 77 21 linked link VBN cord-001824-7c37elh6 77 22 to to IN cord-001824-7c37elh6 77 23 the the DT cord-001824-7c37elh6 77 24 Firefly Firefly NNP cord-001824-7c37elh6 77 25 luciferase luciferase NN cord-001824-7c37elh6 77 26 gene gene NN cord-001824-7c37elh6 77 27 were be VBD cord-001824-7c37elh6 77 28 cloned clone VBN cord-001824-7c37elh6 77 29 back back RB cord-001824-7c37elh6 77 30 into into IN cord-001824-7c37elh6 77 31 the the DT cord-001824-7c37elh6 77 32 corresponding correspond VBG cord-001824-7c37elh6 77 33 sites site NNS cord-001824-7c37elh6 77 34 of of IN cord-001824-7c37elh6 77 35 pJD375 pJD375 NNS cord-001824-7c37elh6 77 36 restoring restore VBG cord-001824-7c37elh6 77 37 the the DT cord-001824-7c37elh6 77 38 bicistronic bicistronic JJ cord-001824-7c37elh6 77 39 reporter reporter NN cord-001824-7c37elh6 77 40 system system NN cord-001824-7c37elh6 77 41 with with IN cord-001824-7c37elh6 77 42 the the DT cord-001824-7c37elh6 77 43 frameshifting frameshifte VBG cord-001824-7c37elh6 77 44 window window NN cord-001824-7c37elh6 77 45 . . . cord-001824-7c37elh6 78 1 Plasmids plasmid NNS cord-001824-7c37elh6 78 2 pMB38 pMB38 NNS cord-001824-7c37elh6 78 3 - - HYPH cord-001824-7c37elh6 78 4 9mer 9mer CD cord-001824-7c37elh6 78 5 ( ( -LRB- cord-001824-7c37elh6 78 6 FF FF NNP cord-001824-7c37elh6 78 7 and and CC cord-001824-7c37elh6 78 8 WT WT NNP cord-001824-7c37elh6 78 9 ) ) -RRB- cord-001824-7c37elh6 78 10 contain contain VBP cord-001824-7c37elh6 78 11 a a DT cord-001824-7c37elh6 78 12 HIS4A::lacZ HIS4A::lacZ NNP cord-001824-7c37elh6 78 13 reporter reporter NN cord-001824-7c37elh6 78 14 cassette cassette NN cord-001824-7c37elh6 78 15 . . . cord-001824-7c37elh6 79 1 In in IN cord-001824-7c37elh6 79 2 pMB38 pMB38 NNS cord-001824-7c37elh6 79 3 - - SYM cord-001824-7c37elh6 79 4 9merFF 9merff CD cord-001824-7c37elh6 79 5 ( ( -LRB- cord-001824-7c37elh6 79 6 inframe inframe NN cord-001824-7c37elh6 79 7 control control NN cord-001824-7c37elh6 79 8 construct construct VB cord-001824-7c37elh6 79 9 ) ) -RRB- cord-001824-7c37elh6 79 10 , , , cord-001824-7c37elh6 79 11 the the DT cord-001824-7c37elh6 79 12 lacZ lacZ NNP cord-001824-7c37elh6 79 13 gene gene NN cord-001824-7c37elh6 79 14 is be VBZ cord-001824-7c37elh6 79 15 in in IN cord-001824-7c37elh6 79 16 0 0 CD cord-001824-7c37elh6 79 17 frame frame NN cord-001824-7c37elh6 79 18 , , , cord-001824-7c37elh6 79 19 while while IN cord-001824-7c37elh6 79 20 in in IN cord-001824-7c37elh6 79 21 pMB38 pMB38 NNS cord-001824-7c37elh6 79 22 - - HYPH cord-001824-7c37elh6 79 23 9merWT 9merwt CD cord-001824-7c37elh6 79 24 ( ( -LRB- cord-001824-7c37elh6 79 25 test test NN cord-001824-7c37elh6 79 26 construct construct VB cord-001824-7c37elh6 79 27 ) ) -RRB- cord-001824-7c37elh6 79 28 , , , cord-001824-7c37elh6 79 29 the the DT cord-001824-7c37elh6 79 30 lacZ lacZ NNP cord-001824-7c37elh6 79 31 gene gene NN cord-001824-7c37elh6 79 32 is be VBZ cord-001824-7c37elh6 79 33 in in IN cord-001824-7c37elh6 79 34 +1 +1 NN cord-001824-7c37elh6 79 35 frame frame NN cord-001824-7c37elh6 79 36 ( ( -LRB- cord-001824-7c37elh6 79 37 Figure figure NN cord-001824-7c37elh6 79 38 4B 4b CD cord-001824-7c37elh6 79 39 ) ) -RRB- cord-001824-7c37elh6 79 40 ( ( -LRB- cord-001824-7c37elh6 79 41 41 41 CD cord-001824-7c37elh6 79 42 ) ) -RRB- cord-001824-7c37elh6 79 43 . . . cord-001824-7c37elh6 80 1 These these DT cord-001824-7c37elh6 80 2 plasmids plasmid NNS cord-001824-7c37elh6 80 3 were be VBD cord-001824-7c37elh6 80 4 used use VBN cord-001824-7c37elh6 80 5 as as IN cord-001824-7c37elh6 80 6 templates template NNS cord-001824-7c37elh6 80 7 for for IN cord-001824-7c37elh6 80 8 PCR PCR NNP cord-001824-7c37elh6 80 9 oligonucleotide oligonucleotide NN cord-001824-7c37elh6 80 10 directed direct VBD cord-001824-7c37elh6 80 11 mutagenesis mutagenesis NN cord-001824-7c37elh6 80 12 to to TO cord-001824-7c37elh6 80 13 alter alter VB cord-001824-7c37elh6 80 14 the the DT cord-001824-7c37elh6 80 15 Ty1 ty1 CD cord-001824-7c37elh6 80 16 sequence sequence NN cord-001824-7c37elh6 80 17 ( ( -LRB- cord-001824-7c37elh6 80 18 CTT CTT NNP cord-001824-7c37elh6 80 19 - - HYPH cord-001824-7c37elh6 80 20 AGG AGG NNP cord-001824-7c37elh6 80 21 - - HYPH cord-001824-7c37elh6 80 22 C C NNP cord-001824-7c37elh6 80 23 ) ) -RRB- cord-001824-7c37elh6 80 24 ( ( -LRB- cord-001824-7c37elh6 80 25 Figure figure NN cord-001824-7c37elh6 80 26 4B 4b NN cord-001824-7c37elh6 80 27 and and CC cord-001824-7c37elh6 80 28 Supplementary Supplementary NNP cord-001824-7c37elh6 80 29 Table Table NNP cord-001824-7c37elh6 80 30 S2 S2 NNP cord-001824-7c37elh6 80 31 ) ) -RRB- cord-001824-7c37elh6 80 32 . . . cord-001824-7c37elh6 81 1 For for IN cord-001824-7c37elh6 81 2 the the DT cord-001824-7c37elh6 81 3 overexpression overexpression NN cord-001824-7c37elh6 81 4 of of IN cord-001824-7c37elh6 81 5 the the DT cord-001824-7c37elh6 81 6 Lys Lys NNP cord-001824-7c37elh6 81 7 - - HYPH cord-001824-7c37elh6 81 8 tRNA tRNA NNP cord-001824-7c37elh6 81 9 encoded encode VBN cord-001824-7c37elh6 81 10 by by IN cord-001824-7c37elh6 81 11 the the DT cord-001824-7c37elh6 81 12 tK(UUU)L tK(UUU)L NNP cord-001824-7c37elh6 81 13 gene gene NN cord-001824-7c37elh6 81 14 , , , cord-001824-7c37elh6 81 15 we -PRON- PRP cord-001824-7c37elh6 81 16 first first RB cord-001824-7c37elh6 81 17 introduced introduce VBD cord-001824-7c37elh6 81 18 SphI SphI NNP cord-001824-7c37elh6 81 19 and and CC cord-001824-7c37elh6 81 20 NheI NheI NNP cord-001824-7c37elh6 81 21 restriction restriction NN cord-001824-7c37elh6 81 22 sites site NNS cord-001824-7c37elh6 81 23 to to IN cord-001824-7c37elh6 81 24 plasmids plasmid NNS cord-001824-7c37elh6 81 25 pMB38 pMB38 NNP cord-001824-7c37elh6 81 26 - - HYPH cord-001824-7c37elh6 81 27 9mer 9mer CD cord-001824-7c37elh6 81 28 ( ( -LRB- cord-001824-7c37elh6 81 29 FF FF NNP cord-001824-7c37elh6 81 30 and and CC cord-001824-7c37elh6 81 31 WT WT NNP cord-001824-7c37elh6 81 32 ) ) -RRB- cord-001824-7c37elh6 81 33 carrying carry VBG cord-001824-7c37elh6 81 34 the the DT cord-001824-7c37elh6 81 35 ' ' `` cord-001824-7c37elh6 81 36 CUU CUU NNP cord-001824-7c37elh6 81 37 - - HYPH cord-001824-7c37elh6 81 38 AAA AAA NNP cord-001824-7c37elh6 81 39 - - HYPH cord-001824-7c37elh6 81 40 C c NN cord-001824-7c37elh6 81 41 ' ' '' cord-001824-7c37elh6 81 42 sequence sequence NN cord-001824-7c37elh6 81 43 by by IN cord-001824-7c37elh6 81 44 PCR PCR NNP cord-001824-7c37elh6 81 45 oligonucleotide oligonucleotide NN cord-001824-7c37elh6 81 46 directed direct VBD cord-001824-7c37elh6 81 47 mutagenesis mutagenesis NN cord-001824-7c37elh6 81 48 . . . cord-001824-7c37elh6 82 1 Oligonucleotides oligonucleotides NN cord-001824-7c37elh6 82 2 used use VBD cord-001824-7c37elh6 82 3 were be VBD cord-001824-7c37elh6 82 4 5 5 CD cord-001824-7c37elh6 82 5 -GGTGTCGGGGCGCATGCATGACCCAGTCAC-3 -ggtgtcggggcgcatgcatgacccagtcac-3 NN cord-001824-7c37elh6 82 6 and and CC cord-001824-7c37elh6 82 7 5 5 CD cord-001824-7c37elh6 82 8 -AGAGTGCACCATATGCGGTGTGAGCT -agagtgcaccatatgcggtgtgagct ADD cord-001824-7c37elh6 82 9 AGCGCACAGATGCG-3 AGCGCACAGATGCG-3 NNP cord-001824-7c37elh6 82 10 . . . cord-001824-7c37elh6 83 1 The the DT cord-001824-7c37elh6 83 2 tK(UUU)L tK(UUU)L NNP cord-001824-7c37elh6 83 3 gene gene NN cord-001824-7c37elh6 83 4 was be VBD cord-001824-7c37elh6 83 5 amplified amplify VBN cord-001824-7c37elh6 83 6 from from IN cord-001824-7c37elh6 83 7 strain strain NN cord-001824-7c37elh6 83 8 UMY2067 UMY2067 VBN cord-001824-7c37elh6 83 9 by by IN cord-001824-7c37elh6 83 10 using use VBG cord-001824-7c37elh6 83 11 oligonucleotides oligonucleotide NNS cord-001824-7c37elh6 83 12 5 5 CD cord-001824-7c37elh6 83 13 AAAAGCATGCCGGTAGAGTCTCTT AAAAGCATGCCGGTAGAGTCTCTT NNP cord-001824-7c37elh6 83 14 - - HYPH cord-001824-7c37elh6 83 15 CTTGGTC-3 CTTGGTC-3 NNP cord-001824-7c37elh6 83 16 and and CC cord-001824-7c37elh6 83 17 5 5 CD cord-001824-7c37elh6 83 18 AAAAGCTAGCCGGTA AAAAGCTAGCCGGTA NNP cord-001824-7c37elh6 83 19 - - HYPH cord-001824-7c37elh6 83 20 AGAGAGAAACCTCCA-3 AGAGAGAAACCTCCA-3 NNP cord-001824-7c37elh6 83 21 and and CC cord-001824-7c37elh6 83 22 cloned clone VBN cord-001824-7c37elh6 83 23 between between IN cord-001824-7c37elh6 83 24 SphI SphI NNP cord-001824-7c37elh6 83 25 and and CC cord-001824-7c37elh6 83 26 NheI NheI NNP cord-001824-7c37elh6 83 27 sites site NNS cord-001824-7c37elh6 83 28 of of IN cord-001824-7c37elh6 83 29 these these DT cord-001824-7c37elh6 83 30 plasmids plasmid NNS cord-001824-7c37elh6 83 31 . . . cord-001824-7c37elh6 84 1 Three three CD cord-001824-7c37elh6 84 2 individual individual JJ cord-001824-7c37elh6 84 3 transformants transformant NNS cord-001824-7c37elh6 84 4 of of IN cord-001824-7c37elh6 84 5 each each DT cord-001824-7c37elh6 84 6 dual dual JJ cord-001824-7c37elh6 84 7 luciferase luciferase NN cord-001824-7c37elh6 84 8 assay assay NN cord-001824-7c37elh6 84 9 construct construct NN cord-001824-7c37elh6 84 10 ( ( -LRB- cord-001824-7c37elh6 84 11 biological biological JJ cord-001824-7c37elh6 84 12 replicates replicate NNS cord-001824-7c37elh6 84 13 ) ) -RRB- cord-001824-7c37elh6 84 14 were be VBD cord-001824-7c37elh6 84 15 grown grow VBN cord-001824-7c37elh6 84 16 at at IN cord-001824-7c37elh6 84 17 30 30 CD cord-001824-7c37elh6 85 1 • • NNP cord-001824-7c37elh6 85 2 C C NNP cord-001824-7c37elh6 85 3 in in IN cord-001824-7c37elh6 85 4 synthetic synthetic JJ cord-001824-7c37elh6 85 5 complete complete JJ cord-001824-7c37elh6 85 6 ( ( -LRB- cord-001824-7c37elh6 85 7 SC)-Ura sc)-ura VB cord-001824-7c37elh6 85 8 medium medium NN cord-001824-7c37elh6 85 9 to to IN cord-001824-7c37elh6 85 10 an an DT cord-001824-7c37elh6 85 11 optical optical JJ cord-001824-7c37elh6 85 12 density density NN cord-001824-7c37elh6 85 13 at at IN cord-001824-7c37elh6 85 14 600 600 CD cord-001824-7c37elh6 85 15 nm nm NN cord-001824-7c37elh6 86 1 ( ( -LRB- cord-001824-7c37elh6 86 2 OD OD NNP cord-001824-7c37elh6 86 3 600 600 CD cord-001824-7c37elh6 86 4 ) ) -RRB- cord-001824-7c37elh6 86 5 of of IN cord-001824-7c37elh6 86 6 0.5 0.5 CD cord-001824-7c37elh6 86 7 . . . cord-001824-7c37elh6 87 1 For for IN cord-001824-7c37elh6 87 2 each each DT cord-001824-7c37elh6 87 3 transformant transformant JJ cord-001824-7c37elh6 87 4 triplicate triplicate NN cord-001824-7c37elh6 87 5 samples sample NNS cord-001824-7c37elh6 87 6 ( ( -LRB- cord-001824-7c37elh6 87 7 technical technical JJ cord-001824-7c37elh6 87 8 replicates replicate NNS cord-001824-7c37elh6 87 9 ) ) -RRB- cord-001824-7c37elh6 87 10 of of IN cord-001824-7c37elh6 87 11 10 10 CD cord-001824-7c37elh6 87 12 l l NN cord-001824-7c37elh6 87 13 cells cell NNS cord-001824-7c37elh6 87 14 were be VBD cord-001824-7c37elh6 87 15 collected collect VBN cord-001824-7c37elh6 87 16 and and CC cord-001824-7c37elh6 87 17 kept keep VBN cord-001824-7c37elh6 87 18 at at IN cord-001824-7c37elh6 87 19 -80 -80 NNP cord-001824-7c37elh6 88 1 • • NNP cord-001824-7c37elh6 89 1 C. C. NNP cord-001824-7c37elh6 90 1 The the DT cord-001824-7c37elh6 90 2 luciferase luciferase NN cord-001824-7c37elh6 90 3 assays assay NNS cord-001824-7c37elh6 90 4 were be VBD cord-001824-7c37elh6 90 5 performed perform VBN cord-001824-7c37elh6 90 6 according accord VBG cord-001824-7c37elh6 90 7 to to IN cord-001824-7c37elh6 90 8 the the DT cord-001824-7c37elh6 90 9 instructions instruction NNS cord-001824-7c37elh6 90 10 of of IN cord-001824-7c37elh6 90 11 Dual Dual NNP cord-001824-7c37elh6 90 12 - - HYPH cord-001824-7c37elh6 90 13 Luciferase Luciferase NNP cord-001824-7c37elh6 90 14 Reporter reporter NN cord-001824-7c37elh6 90 15 Assay Assay NNP cord-001824-7c37elh6 90 16 System System NNP cord-001824-7c37elh6 90 17 ( ( -LRB- cord-001824-7c37elh6 90 18 Promega Promega NNP cord-001824-7c37elh6 90 19 , , , cord-001824-7c37elh6 90 20 Catalog Catalog NNP cord-001824-7c37elh6 90 21 No no NN cord-001824-7c37elh6 90 22 . . . cord-001824-7c37elh6 90 23 E1960 E1960 NNP cord-001824-7c37elh6 90 24 ) ) -RRB- cord-001824-7c37elh6 90 25 . . . cord-001824-7c37elh6 91 1 The the DT cord-001824-7c37elh6 91 2 luciferase luciferase NN cord-001824-7c37elh6 91 3 activities activity NNS cord-001824-7c37elh6 91 4 were be VBD cord-001824-7c37elh6 91 5 determined determine VBN cord-001824-7c37elh6 91 6 in in IN cord-001824-7c37elh6 91 7 a a DT cord-001824-7c37elh6 91 8 white white JJ cord-001824-7c37elh6 91 9 96-well 96-well CD cord-001824-7c37elh6 91 10 plate plate NN cord-001824-7c37elh6 91 11 ( ( -LRB- cord-001824-7c37elh6 91 12 Thermo Thermo NNP cord-001824-7c37elh6 91 13 Scientific Scientific NNP cord-001824-7c37elh6 91 14 , , , cord-001824-7c37elh6 91 15 # # $ cord-001824-7c37elh6 91 16 436111 436111 CD cord-001824-7c37elh6 91 17 ) ) -RRB- cord-001824-7c37elh6 91 18 using use VBG cord-001824-7c37elh6 91 19 a a DT cord-001824-7c37elh6 91 20 TECAN TECAN NNP cord-001824-7c37elh6 91 21 infinite infinite JJ cord-001824-7c37elh6 91 22 200 200 CD cord-001824-7c37elh6 91 23 luminometer luminometer NN cord-001824-7c37elh6 91 24 . . . cord-001824-7c37elh6 92 1 The the DT cord-001824-7c37elh6 92 2 levels level NNS cord-001824-7c37elh6 92 3 of of IN cord-001824-7c37elh6 92 4 +1 +1 NN cord-001824-7c37elh6 92 5 frameshifting frameshifting NN cord-001824-7c37elh6 92 6 ( ( -LRB- cord-001824-7c37elh6 92 7 % % NN cord-001824-7c37elh6 92 8 ) ) -RRB- cord-001824-7c37elh6 92 9 were be VBD cord-001824-7c37elh6 92 10 determined determine VBN cord-001824-7c37elh6 92 11 by by IN cord-001824-7c37elh6 92 12 normalization normalization NN cord-001824-7c37elh6 92 13 of of IN cord-001824-7c37elh6 92 14 each each DT cord-001824-7c37elh6 92 15 biological biological JJ cord-001824-7c37elh6 92 16 test test NN cord-001824-7c37elh6 92 17 replicate replicate VBP cord-001824-7c37elh6 92 18 with with IN cord-001824-7c37elh6 92 19 the the DT cord-001824-7c37elh6 92 20 average average NN cord-001824-7c37elh6 92 21 of of IN cord-001824-7c37elh6 92 22 the the DT cord-001824-7c37elh6 92 23 three three CD cord-001824-7c37elh6 92 24 biological biological JJ cord-001824-7c37elh6 92 25 replicates replicate NNS cord-001824-7c37elh6 92 26 of of IN cord-001824-7c37elh6 92 27 the the DT cord-001824-7c37elh6 92 28 in in IN cord-001824-7c37elh6 92 29 - - HYPH cord-001824-7c37elh6 92 30 frame frame NN cord-001824-7c37elh6 92 31 control control NN cord-001824-7c37elh6 92 32 . . . cord-001824-7c37elh6 93 1 Each each DT cord-001824-7c37elh6 93 2 value value NN cord-001824-7c37elh6 93 3 of of IN cord-001824-7c37elh6 93 4 the the DT cord-001824-7c37elh6 93 5 biological biological JJ cord-001824-7c37elh6 93 6 replicates replicate NNS cord-001824-7c37elh6 93 7 was be VBD cord-001824-7c37elh6 93 8 determined determine VBN cord-001824-7c37elh6 93 9 by by IN cord-001824-7c37elh6 93 10 taking take VBG cord-001824-7c37elh6 93 11 the the DT cord-001824-7c37elh6 93 12 median median NN cord-001824-7c37elh6 93 13 of of IN cord-001824-7c37elh6 93 14 the the DT cord-001824-7c37elh6 93 15 three three CD cord-001824-7c37elh6 93 16 technical technical JJ cord-001824-7c37elh6 93 17 replicates replicate NNS cord-001824-7c37elh6 93 18 . . . cord-001824-7c37elh6 94 1 The the DT cord-001824-7c37elh6 94 2 significant significant JJ cord-001824-7c37elh6 94 3 differences difference NNS cord-001824-7c37elh6 94 4 between between IN cord-001824-7c37elh6 94 5 wild wild JJ cord-001824-7c37elh6 94 6 type type NN cord-001824-7c37elh6 94 7 and and CC cord-001824-7c37elh6 94 8 mutant mutant NN cord-001824-7c37elh6 94 9 were be VBD cord-001824-7c37elh6 94 10 determined determine VBN cord-001824-7c37elh6 94 11 by by IN cord-001824-7c37elh6 94 12 two two CD cord-001824-7c37elh6 94 13 - - HYPH cord-001824-7c37elh6 94 14 tail tail NN cord-001824-7c37elh6 94 15 t t NN cord-001824-7c37elh6 94 16 - - HYPH cord-001824-7c37elh6 94 17 test test NN cord-001824-7c37elh6 94 18 . . . cord-001824-7c37elh6 95 1 Three three CD cord-001824-7c37elh6 95 2 transformants transformant NNS cord-001824-7c37elh6 95 3 of of IN cord-001824-7c37elh6 95 4 each each DT cord-001824-7c37elh6 95 5 Ty1 ty1 CD cord-001824-7c37elh6 95 6 assay assay NN cord-001824-7c37elh6 95 7 construct construct NN cord-001824-7c37elh6 95 8 ( ( -LRB- cord-001824-7c37elh6 95 9 biological biological JJ cord-001824-7c37elh6 95 10 replicates replicate NNS cord-001824-7c37elh6 95 11 ) ) -RRB- cord-001824-7c37elh6 95 12 were be VBD cord-001824-7c37elh6 95 13 grown grow VBN cord-001824-7c37elh6 95 14 in in IN cord-001824-7c37elh6 95 15 SC SC NNP cord-001824-7c37elh6 95 16 - - HYPH cord-001824-7c37elh6 95 17 Ura Ura NNP cord-001824-7c37elh6 95 18 to to TO cord-001824-7c37elh6 95 19 OD OD NNP cord-001824-7c37elh6 95 20 600 600 CD cord-001824-7c37elh6 95 21 ≈0.5 ≈0.5 CD cord-001824-7c37elh6 95 22 and and CC cord-001824-7c37elh6 95 23 20 20 CD cord-001824-7c37elh6 95 24 OD OD NNP cord-001824-7c37elh6 95 25 600 600 CD cord-001824-7c37elh6 95 26 -units -units : cord-001824-7c37elh6 95 27 were be VBD cord-001824-7c37elh6 95 28 collected collect VBN cord-001824-7c37elh6 95 29 and and CC cord-001824-7c37elh6 95 30 kept keep VBN cord-001824-7c37elh6 95 31 at at IN cord-001824-7c37elh6 95 32 -20 -20 . cord-001824-7c37elh6 96 1 • • NNP cord-001824-7c37elh6 96 2 C. C. NNP cord-001824-7c37elh6 97 1 For for IN cord-001824-7c37elh6 97 2 each each DT cord-001824-7c37elh6 97 3 transformant transformant NN cord-001824-7c37elh6 97 4 , , , cord-001824-7c37elh6 97 5 ␤ ␤ IN cord-001824-7c37elh6 97 6 -galactosidase -galactosidase CD cord-001824-7c37elh6 97 7 measurements measurement NNS cord-001824-7c37elh6 97 8 were be VBD cord-001824-7c37elh6 97 9 done do VBN cord-001824-7c37elh6 97 10 three three CD cord-001824-7c37elh6 97 11 times time NNS cord-001824-7c37elh6 97 12 ( ( -LRB- cord-001824-7c37elh6 97 13 technical technical JJ cord-001824-7c37elh6 97 14 replicates replicate NNS cord-001824-7c37elh6 97 15 ) ) -RRB- cord-001824-7c37elh6 97 16 . . . cord-001824-7c37elh6 98 1 ␤ ␤ . cord-001824-7c37elh6 99 1 -galactosidase -galactosidase : cord-001824-7c37elh6 99 2 activities activity NNS cord-001824-7c37elh6 99 3 were be VBD cord-001824-7c37elh6 99 4 determined determine VBN cord-001824-7c37elh6 99 5 as as IN cord-001824-7c37elh6 99 6 described describe VBN cord-001824-7c37elh6 99 7 previously previously RB cord-001824-7c37elh6 99 8 ( ( -LRB- cord-001824-7c37elh6 99 9 39 39 CD cord-001824-7c37elh6 99 10 ) ) -RRB- cord-001824-7c37elh6 99 11 . . . cord-001824-7c37elh6 100 1 Values value NNS cord-001824-7c37elh6 100 2 of of IN cord-001824-7c37elh6 100 3 the the DT cord-001824-7c37elh6 100 4 biological biological JJ cord-001824-7c37elh6 100 5 replicates replicate NNS cord-001824-7c37elh6 100 6 were be VBD cord-001824-7c37elh6 100 7 determined determine VBN cord-001824-7c37elh6 100 8 by by IN cord-001824-7c37elh6 100 9 taking take VBG cord-001824-7c37elh6 100 10 the the DT cord-001824-7c37elh6 100 11 median median NN cord-001824-7c37elh6 100 12 of of IN cord-001824-7c37elh6 100 13 the the DT cord-001824-7c37elh6 100 14 technical technical JJ cord-001824-7c37elh6 100 15 replicates replicate NNS cord-001824-7c37elh6 100 16 . . . cord-001824-7c37elh6 101 1 The the DT cord-001824-7c37elh6 101 2 levels level NNS cord-001824-7c37elh6 101 3 of of IN cord-001824-7c37elh6 101 4 +1 +1 NN cord-001824-7c37elh6 101 5 frameshifting frameshifting NN cord-001824-7c37elh6 101 6 ( ( -LRB- cord-001824-7c37elh6 101 7 % % NN cord-001824-7c37elh6 101 8 ) ) -RRB- cord-001824-7c37elh6 101 9 were be VBD cord-001824-7c37elh6 101 10 determined determine VBN cord-001824-7c37elh6 101 11 by by IN cord-001824-7c37elh6 101 12 normalization normalization NN cord-001824-7c37elh6 101 13 of of IN cord-001824-7c37elh6 101 14 each each DT cord-001824-7c37elh6 101 15 biological biological JJ cord-001824-7c37elh6 101 16 test test NN cord-001824-7c37elh6 101 17 replicate replicate VBP cord-001824-7c37elh6 101 18 with with IN cord-001824-7c37elh6 101 19 the the DT cord-001824-7c37elh6 101 20 average average NN cord-001824-7c37elh6 101 21 of of IN cord-001824-7c37elh6 101 22 the the DT cord-001824-7c37elh6 101 23 three three CD cord-001824-7c37elh6 101 24 biological biological JJ cord-001824-7c37elh6 101 25 replicates replicate NNS cord-001824-7c37elh6 101 26 of of IN cord-001824-7c37elh6 101 27 the the DT cord-001824-7c37elh6 101 28 in in IN cord-001824-7c37elh6 101 29 - - HYPH cord-001824-7c37elh6 101 30 frame frame NN cord-001824-7c37elh6 101 31 control control NN cord-001824-7c37elh6 101 32 . . . cord-001824-7c37elh6 102 1 The the DT cord-001824-7c37elh6 102 2 significant significant JJ cord-001824-7c37elh6 102 3 differences difference NNS cord-001824-7c37elh6 102 4 between between IN cord-001824-7c37elh6 102 5 wild wild JJ cord-001824-7c37elh6 102 6 type type NN cord-001824-7c37elh6 102 7 and and CC cord-001824-7c37elh6 102 8 mutant mutant NN cord-001824-7c37elh6 102 9 were be VBD cord-001824-7c37elh6 102 10 determined determine VBN cord-001824-7c37elh6 102 11 by by IN cord-001824-7c37elh6 102 12 two two CD cord-001824-7c37elh6 102 13 - - HYPH cord-001824-7c37elh6 102 14 tail tail NN cord-001824-7c37elh6 102 15 t t NN cord-001824-7c37elh6 102 16 - - HYPH cord-001824-7c37elh6 102 17 test test NN cord-001824-7c37elh6 102 18 . . . cord-001824-7c37elh6 103 1 To to TO cord-001824-7c37elh6 103 2 analyze analyze VB cord-001824-7c37elh6 103 3 the the DT cord-001824-7c37elh6 103 4 role role NN cord-001824-7c37elh6 103 5 of of IN cord-001824-7c37elh6 103 6 wobble wobble NN cord-001824-7c37elh6 103 7 uridine uridine NN cord-001824-7c37elh6 103 8 modifications modification NNS cord-001824-7c37elh6 103 9 ncm ncm NNP cord-001824-7c37elh6 103 10 5 5 CD cord-001824-7c37elh6 103 11 U U NNP cord-001824-7c37elh6 103 12 , , , cord-001824-7c37elh6 103 13 ncm ncm NNP cord-001824-7c37elh6 103 14 5 5 CD cord-001824-7c37elh6 104 1 Um um UH cord-001824-7c37elh6 104 2 , , , cord-001824-7c37elh6 104 3 mcm mcm NN cord-001824-7c37elh6 104 4 5 5 CD cord-001824-7c37elh6 104 5 U U NNP cord-001824-7c37elh6 104 6 or or CC cord-001824-7c37elh6 104 7 mcm mcm NNP cord-001824-7c37elh6 104 8 5 5 CD cord-001824-7c37elh6 104 9 s s NN cord-001824-7c37elh6 104 10 2 2 CD cord-001824-7c37elh6 104 11 U u NN cord-001824-7c37elh6 104 12 in in IN cord-001824-7c37elh6 104 13 reading read VBG cord-001824-7c37elh6 104 14 frame frame NN cord-001824-7c37elh6 104 15 maintenance maintenance NN cord-001824-7c37elh6 104 16 , , , cord-001824-7c37elh6 104 17 we -PRON- PRP cord-001824-7c37elh6 104 18 used use VBD cord-001824-7c37elh6 104 19 defined define VBN cord-001824-7c37elh6 104 20 yeast yeast NN cord-001824-7c37elh6 104 21 mutants mutant NNS cord-001824-7c37elh6 104 22 unable unable JJ cord-001824-7c37elh6 104 23 to to TO cord-001824-7c37elh6 104 24 form form VB cord-001824-7c37elh6 104 25 the the DT cord-001824-7c37elh6 104 26 s s NNP cord-001824-7c37elh6 104 27 2 2 CD cord-001824-7c37elh6 104 28 Figure Figure NNP cord-001824-7c37elh6 104 29 4 4 CD cord-001824-7c37elh6 104 30 . . . cord-001824-7c37elh6 105 1 ( ( -LRB- cord-001824-7c37elh6 105 2 A a DT cord-001824-7c37elh6 105 3 ) ) -RRB- cord-001824-7c37elh6 105 4 Schematic schematic JJ cord-001824-7c37elh6 105 5 drawing drawing NN cord-001824-7c37elh6 105 6 of of IN cord-001824-7c37elh6 105 7 the the DT cord-001824-7c37elh6 105 8 dual dual JJ cord-001824-7c37elh6 105 9 - - HYPH cord-001824-7c37elh6 105 10 luciferase luciferase NN cord-001824-7c37elh6 105 11 assay assay NN cord-001824-7c37elh6 105 12 system system NN cord-001824-7c37elh6 105 13 . . . cord-001824-7c37elh6 106 1 Transcription transcription NN cord-001824-7c37elh6 106 2 of of IN cord-001824-7c37elh6 106 3 the the DT cord-001824-7c37elh6 106 4 genes gene NNS cord-001824-7c37elh6 106 5 encoding encode VBG cord-001824-7c37elh6 106 6 the the DT cord-001824-7c37elh6 106 7 Renilla Renilla NNP cord-001824-7c37elh6 106 8 - - : cord-001824-7c37elh6 106 9 and and CC cord-001824-7c37elh6 106 10 Firefly Firefly NNP cord-001824-7c37elh6 106 11 - - HYPH cord-001824-7c37elh6 106 12 luciferase luciferase NNP cord-001824-7c37elh6 106 13 is be VBZ cord-001824-7c37elh6 106 14 under under IN cord-001824-7c37elh6 106 15 the the DT cord-001824-7c37elh6 106 16 ADH1 ADH1 NNP cord-001824-7c37elh6 106 17 promoter promoter NN cord-001824-7c37elh6 106 18 and and CC cord-001824-7c37elh6 106 19 terminated terminate VBN cord-001824-7c37elh6 106 20 by by IN cord-001824-7c37elh6 106 21 CYC1 cyc1 CD cord-001824-7c37elh6 106 22 terminator terminator NN cord-001824-7c37elh6 106 23 . . . cord-001824-7c37elh6 107 1 Frameshift frameshift NN cord-001824-7c37elh6 107 2 sites site NNS cord-001824-7c37elh6 107 3 were be VBD cord-001824-7c37elh6 107 4 cloned clone VBN cord-001824-7c37elh6 107 5 between between IN cord-001824-7c37elh6 107 6 the the DT cord-001824-7c37elh6 107 7 luciferase luciferase NN cord-001824-7c37elh6 107 8 genes gene NNS cord-001824-7c37elh6 107 9 and and CC cord-001824-7c37elh6 107 10 expression expression NN cord-001824-7c37elh6 107 11 of of IN cord-001824-7c37elh6 107 12 the the DT cord-001824-7c37elh6 107 13 Firefly Firefly NNP cord-001824-7c37elh6 107 14 luciferase luciferase NN cord-001824-7c37elh6 107 15 gene gene NN cord-001824-7c37elh6 107 16 requires require VBZ cord-001824-7c37elh6 107 17 +1 +1 NNP cord-001824-7c37elh6 107 18 frameshifting frameshifting NN cord-001824-7c37elh6 107 19 . . . cord-001824-7c37elh6 108 1 The the DT cord-001824-7c37elh6 108 2 frameshifting frameshifte VBG cord-001824-7c37elh6 108 3 site site NN cord-001824-7c37elh6 108 4 is be VBZ cord-001824-7c37elh6 108 5 as as IN cord-001824-7c37elh6 108 6 follows follow VBZ cord-001824-7c37elh6 108 7 : : : cord-001824-7c37elh6 109 1 XXX XXX NNP cord-001824-7c37elh6 109 2 - - HYPH cord-001824-7c37elh6 109 3 slippery slippery JJ cord-001824-7c37elh6 109 4 site site NN cord-001824-7c37elh6 109 5 , , , cord-001824-7c37elh6 109 6 NNN nnn NN cord-001824-7c37elh6 109 7 - - HYPH cord-001824-7c37elh6 109 8 assay assay NN cord-001824-7c37elh6 109 9 codon codon NN cord-001824-7c37elh6 109 10 and and CC cord-001824-7c37elh6 109 11 UAG UAG NNP cord-001824-7c37elh6 109 12 - - HYPH cord-001824-7c37elh6 109 13 stop stop NN cord-001824-7c37elh6 109 14 codon codon NN cord-001824-7c37elh6 109 15 ( ( -LRB- cord-001824-7c37elh6 109 16 all all DT cord-001824-7c37elh6 109 17 in in IN cord-001824-7c37elh6 109 18 - - HYPH cord-001824-7c37elh6 109 19 frame frame NN cord-001824-7c37elh6 109 20 ) ) -RRB- cord-001824-7c37elh6 109 21 . . . cord-001824-7c37elh6 110 1 An an DT cord-001824-7c37elh6 110 2 upstream upstream JJ cord-001824-7c37elh6 110 3 stop stop NN cord-001824-7c37elh6 110 4 codon codon NN cord-001824-7c37elh6 110 5 ( ( -LRB- cord-001824-7c37elh6 110 6 UAG UAG NNP cord-001824-7c37elh6 110 7 ) ) -RRB- cord-001824-7c37elh6 110 8 was be VBD cord-001824-7c37elh6 110 9 placed place VBN cord-001824-7c37elh6 110 10 in in IN cord-001824-7c37elh6 110 11 the the DT cord-001824-7c37elh6 110 12 +1 +1 HYPH cord-001824-7c37elh6 110 13 frame frame NN cord-001824-7c37elh6 110 14 to to TO cord-001824-7c37elh6 110 15 eliminate eliminate VB cord-001824-7c37elh6 110 16 frameshifting frameshifting JJ cord-001824-7c37elh6 110 17 events event NNS cord-001824-7c37elh6 110 18 occurring occur VBG cord-001824-7c37elh6 110 19 before before IN cord-001824-7c37elh6 110 20 the the DT cord-001824-7c37elh6 110 21 assay assay NN cord-001824-7c37elh6 110 22 site site NN cord-001824-7c37elh6 110 23 . . . cord-001824-7c37elh6 111 1 The the DT cord-001824-7c37elh6 111 2 frame frame NN cord-001824-7c37elh6 111 3 of of IN cord-001824-7c37elh6 111 4 the the DT cord-001824-7c37elh6 111 5 different different JJ cord-001824-7c37elh6 111 6 luciferase luciferase NN cord-001824-7c37elh6 111 7 genes gene NNS cord-001824-7c37elh6 111 8 is be VBZ cord-001824-7c37elh6 111 9 indicated indicate VBN cord-001824-7c37elh6 111 10 . . . cord-001824-7c37elh6 112 1 In in IN cord-001824-7c37elh6 112 2 the the DT cord-001824-7c37elh6 112 3 in in IN cord-001824-7c37elh6 112 4 - - HYPH cord-001824-7c37elh6 112 5 frame frame NN cord-001824-7c37elh6 112 6 control control NN cord-001824-7c37elh6 112 7 construct construct NN cord-001824-7c37elh6 112 8 , , , cord-001824-7c37elh6 112 9 Renilla Renilla NNP cord-001824-7c37elh6 112 10 - - : cord-001824-7c37elh6 112 11 and and CC cord-001824-7c37elh6 112 12 Firefly Firefly NNP cord-001824-7c37elh6 112 13 - - HYPH cord-001824-7c37elh6 112 14 luciferase luciferase NN cord-001824-7c37elh6 112 15 genes gene NNS cord-001824-7c37elh6 112 16 are be VBP cord-001824-7c37elh6 112 17 in in IN cord-001824-7c37elh6 112 18 - - HYPH cord-001824-7c37elh6 112 19 frame frame NN cord-001824-7c37elh6 112 20 . . . cord-001824-7c37elh6 113 1 ( ( -LRB- cord-001824-7c37elh6 113 2 B b NN cord-001824-7c37elh6 113 3 ) ) -RRB- cord-001824-7c37elh6 113 4 Schematic schematic JJ cord-001824-7c37elh6 113 5 drawing drawing NN cord-001824-7c37elh6 113 6 of of IN cord-001824-7c37elh6 113 7 the the DT cord-001824-7c37elh6 113 8 Ty1 ty1 CD cord-001824-7c37elh6 113 9 assay assay NN cord-001824-7c37elh6 113 10 system system NN cord-001824-7c37elh6 113 11 . . . cord-001824-7c37elh6 114 1 Transcription transcription NN cord-001824-7c37elh6 114 2 from from IN cord-001824-7c37elh6 114 3 HIS4 HIS4 NNP cord-001824-7c37elh6 114 4 promoter promoter NN cord-001824-7c37elh6 114 5 generates generate VBZ cord-001824-7c37elh6 114 6 a a DT cord-001824-7c37elh6 114 7 transcript transcript NN cord-001824-7c37elh6 114 8 containing contain VBG cord-001824-7c37elh6 114 9 the the DT cord-001824-7c37elh6 114 10 first first JJ cord-001824-7c37elh6 114 11 100 100 CD cord-001824-7c37elh6 114 12 nucleotides nucleotide NNS cord-001824-7c37elh6 114 13 of of IN cord-001824-7c37elh6 114 14 the the DT cord-001824-7c37elh6 114 15 HIS4 HIS4 NNP cord-001824-7c37elh6 114 16 gene gene NN cord-001824-7c37elh6 114 17 in in IN cord-001824-7c37elh6 114 18 the the DT cord-001824-7c37elh6 114 19 in in IN cord-001824-7c37elh6 114 20 - - HYPH cord-001824-7c37elh6 114 21 frame frame NN cord-001824-7c37elh6 114 22 and and CC cord-001824-7c37elh6 114 23 the the DT cord-001824-7c37elh6 114 24 lacZ lacZ NNP cord-001824-7c37elh6 114 25 gene gene NN cord-001824-7c37elh6 114 26 of of IN cord-001824-7c37elh6 114 27 Escherichia Escherichia NNP cord-001824-7c37elh6 114 28 coli coli NNS cord-001824-7c37elh6 114 29 in in IN cord-001824-7c37elh6 114 30 the the DT cord-001824-7c37elh6 114 31 +1 +1 HYPH cord-001824-7c37elh6 114 32 frame frame NN cord-001824-7c37elh6 114 33 . . . cord-001824-7c37elh6 115 1 Expression expression NN cord-001824-7c37elh6 115 2 of of IN cord-001824-7c37elh6 115 3 the the DT cord-001824-7c37elh6 115 4 lacZ lacZ NNP cord-001824-7c37elh6 115 5 gene gene NN cord-001824-7c37elh6 115 6 is be VBZ cord-001824-7c37elh6 115 7 dependent dependent JJ cord-001824-7c37elh6 115 8 on on IN cord-001824-7c37elh6 115 9 a a DT cord-001824-7c37elh6 115 10 +1 +1 HYPH cord-001824-7c37elh6 115 11 ribosomal ribosomal JJ cord-001824-7c37elh6 115 12 frameshift frameshift NN cord-001824-7c37elh6 115 13 event event NN cord-001824-7c37elh6 115 14 taking take VBG cord-001824-7c37elh6 115 15 place place NN cord-001824-7c37elh6 115 16 within within IN cord-001824-7c37elh6 115 17 Ty1 ty1 JJ cord-001824-7c37elh6 115 18 sequence sequence NN cord-001824-7c37elh6 115 19 . . . cord-001824-7c37elh6 116 1 An an DT cord-001824-7c37elh6 116 2 upstream upstream JJ cord-001824-7c37elh6 116 3 stop stop NN cord-001824-7c37elh6 116 4 codon codon NN cord-001824-7c37elh6 116 5 ( ( -LRB- cord-001824-7c37elh6 116 6 UGA UGA NNP cord-001824-7c37elh6 116 7 ) ) -RRB- cord-001824-7c37elh6 116 8 was be VBD cord-001824-7c37elh6 116 9 placed place VBN cord-001824-7c37elh6 116 10 in in IN cord-001824-7c37elh6 116 11 the the DT cord-001824-7c37elh6 116 12 +1 +1 HYPH cord-001824-7c37elh6 116 13 reading reading NN cord-001824-7c37elh6 116 14 frame frame NN cord-001824-7c37elh6 116 15 to to TO cord-001824-7c37elh6 116 16 eliminate eliminate VB cord-001824-7c37elh6 116 17 frameshifting frameshifting JJ cord-001824-7c37elh6 116 18 events event NNS cord-001824-7c37elh6 116 19 occurring occur VBG cord-001824-7c37elh6 116 20 before before IN cord-001824-7c37elh6 116 21 the the DT cord-001824-7c37elh6 116 22 assay assay NN cord-001824-7c37elh6 116 23 site site NN cord-001824-7c37elh6 116 24 . . . cord-001824-7c37elh6 117 1 In in IN cord-001824-7c37elh6 117 2 the the DT cord-001824-7c37elh6 117 3 in in IN cord-001824-7c37elh6 117 4 - - HYPH cord-001824-7c37elh6 117 5 frame frame NN cord-001824-7c37elh6 117 6 control control NN cord-001824-7c37elh6 117 7 construct construct NN cord-001824-7c37elh6 117 8 , , , cord-001824-7c37elh6 117 9 the the DT cord-001824-7c37elh6 117 10 first first JJ cord-001824-7c37elh6 117 11 100 100 CD cord-001824-7c37elh6 117 12 nucleotides nucleotide NNS cord-001824-7c37elh6 117 13 of of IN cord-001824-7c37elh6 117 14 the the DT cord-001824-7c37elh6 117 15 HIS4 HIS4 NNP cord-001824-7c37elh6 117 16 gene gene NN cord-001824-7c37elh6 117 17 and and CC cord-001824-7c37elh6 117 18 lacZ lacZ NNP cord-001824-7c37elh6 117 19 gene gene NN cord-001824-7c37elh6 117 20 are be VBP cord-001824-7c37elh6 117 21 in in IN cord-001824-7c37elh6 117 22 - - HYPH cord-001824-7c37elh6 117 23 frame frame NN cord-001824-7c37elh6 117 24 . . . cord-001824-7c37elh6 118 1 group group NN cord-001824-7c37elh6 118 2 ( ( -LRB- cord-001824-7c37elh6 118 3 tuc1Δ tuc1δ CD cord-001824-7c37elh6 118 4 ; ; : cord-001824-7c37elh6 118 5 also also RB cord-001824-7c37elh6 118 6 denoted denote VBN cord-001824-7c37elh6 118 7 as as IN cord-001824-7c37elh6 118 8 ncs6Δ ncs6Δ NNP cord-001824-7c37elh6 118 9 ) ) -RRB- cord-001824-7c37elh6 118 10 , , , cord-001824-7c37elh6 118 11 the the DT cord-001824-7c37elh6 118 12 ncm ncm NNP cord-001824-7c37elh6 118 13 5 5 CD cord-001824-7c37elh6 118 14 or or CC cord-001824-7c37elh6 118 15 mcm mcm NNP cord-001824-7c37elh6 118 16 5 5 CD cord-001824-7c37elh6 118 17 groups group NNS cord-001824-7c37elh6 118 18 ( ( -LRB- cord-001824-7c37elh6 118 19 elp3Δ elp3δ UH cord-001824-7c37elh6 118 20 ) ) -RRB- cord-001824-7c37elh6 118 21 or or CC cord-001824-7c37elh6 118 22 the the DT cord-001824-7c37elh6 118 23 esterified esterify VBN cord-001824-7c37elh6 118 24 methyl methyl NN cord-001824-7c37elh6 118 25 group group NN cord-001824-7c37elh6 118 26 ( ( -LRB- cord-001824-7c37elh6 118 27 trm9Δ trm9Δ NNP cord-001824-7c37elh6 118 28 ) ) -RRB- cord-001824-7c37elh6 118 29 of of IN cord-001824-7c37elh6 118 30 the the DT cord-001824-7c37elh6 118 31 mcm mcm NNP cord-001824-7c37elh6 118 32 5 5 CD cord-001824-7c37elh6 118 33 side side NN cord-001824-7c37elh6 118 34 chain chain NN cord-001824-7c37elh6 118 35 . . . cord-001824-7c37elh6 119 1 The the DT cord-001824-7c37elh6 119 2 ribosomal ribosomal NN cord-001824-7c37elh6 119 3 +1 +1 XX cord-001824-7c37elh6 119 4 frameshifting frameshifte VBG cord-001824-7c37elh6 119 5 assay assay NN cord-001824-7c37elh6 119 6 system system NN cord-001824-7c37elh6 119 7 used use VBD cord-001824-7c37elh6 119 8 contains contain VBZ cord-001824-7c37elh6 119 9 a a DT cord-001824-7c37elh6 119 10 Renilla Renilla NNP cord-001824-7c37elh6 119 11 luciferase luciferase NN cord-001824-7c37elh6 119 12 ( ( -LRB- cord-001824-7c37elh6 119 13 R r NN cord-001824-7c37elh6 119 14 - - HYPH cord-001824-7c37elh6 119 15 luc)/ luc)/ JJ cord-001824-7c37elh6 119 16 Firefly Firefly NNP cord-001824-7c37elh6 119 17 luciferase luciferase NN cord-001824-7c37elh6 119 18 ( ( -LRB- cord-001824-7c37elh6 119 19 F F NNP cord-001824-7c37elh6 119 20 - - HYPH cord-001824-7c37elh6 119 21 luc luc NNP cord-001824-7c37elh6 119 22 ) ) -RRB- cord-001824-7c37elh6 120 1 bicistronic bicistronic NNP cord-001824-7c37elh6 120 2 reporter reporter NN cord-001824-7c37elh6 120 3 system system NN cord-001824-7c37elh6 120 4 ( ( -LRB- cord-001824-7c37elh6 120 5 Figure figure NN cord-001824-7c37elh6 120 6 4A 4a CD cord-001824-7c37elh6 120 7 ) ) -RRB- cord-001824-7c37elh6 120 8 ( ( -LRB- cord-001824-7c37elh6 120 9 see see VB cord-001824-7c37elh6 120 10 Material Material NNP cord-001824-7c37elh6 120 11 and and CC cord-001824-7c37elh6 120 12 Methods Methods NNPS cord-001824-7c37elh6 120 13 ) ) -RRB- cord-001824-7c37elh6 120 14 ( ( -LRB- cord-001824-7c37elh6 120 15 40 40 CD cord-001824-7c37elh6 120 16 ) ) -RRB- cord-001824-7c37elh6 120 17 . . . cord-001824-7c37elh6 121 1 This this DT cord-001824-7c37elh6 121 2 bicistronic bicistronic JJ cord-001824-7c37elh6 121 3 mRNA mrna NN cord-001824-7c37elh6 121 4 synthesizes synthesize VBZ cord-001824-7c37elh6 121 5 a a DT cord-001824-7c37elh6 121 6 two two CD cord-001824-7c37elh6 121 7 domain domain NN cord-001824-7c37elh6 121 8 protein protein NN cord-001824-7c37elh6 121 9 with with IN cord-001824-7c37elh6 121 10 the the DT cord-001824-7c37elh6 121 11 indicated indicate VBN cord-001824-7c37elh6 121 12 enzymatic enzymatic JJ cord-001824-7c37elh6 121 13 activities activity NNS cord-001824-7c37elh6 121 14 . . . cord-001824-7c37elh6 122 1 To to TO cord-001824-7c37elh6 122 2 analyze analyze VB cord-001824-7c37elh6 122 3 a a DT cord-001824-7c37elh6 122 4 +1 +1 NN cord-001824-7c37elh6 122 5 frameshift frameshift NN cord-001824-7c37elh6 122 6 event event NN cord-001824-7c37elh6 122 7 a a DT cord-001824-7c37elh6 122 8 sequence sequence NN cord-001824-7c37elh6 122 9 is be VBZ cord-001824-7c37elh6 122 10 introduced introduce VBN cord-001824-7c37elh6 122 11 between between IN cord-001824-7c37elh6 122 12 these these DT cord-001824-7c37elh6 122 13 two two CD cord-001824-7c37elh6 122 14 cistrons cistron NNS cord-001824-7c37elh6 122 15 in in IN cord-001824-7c37elh6 122 16 such such PDT cord-001824-7c37elh6 122 17 a a DT cord-001824-7c37elh6 122 18 way way NN cord-001824-7c37elh6 122 19 that that DT cord-001824-7c37elh6 122 20 translation translation NN cord-001824-7c37elh6 122 21 of of IN cord-001824-7c37elh6 122 22 Rluc Rluc NNP cord-001824-7c37elh6 122 23 is be VBZ cord-001824-7c37elh6 122 24 in in IN cord-001824-7c37elh6 122 25 the the DT cord-001824-7c37elh6 122 26 0 0 CD cord-001824-7c37elh6 122 27 frame frame NN cord-001824-7c37elh6 122 28 and and CC cord-001824-7c37elh6 122 29 the the DT cord-001824-7c37elh6 122 30 F F NNP cord-001824-7c37elh6 122 31 - - HYPH cord-001824-7c37elh6 122 32 luc luc NNP cord-001824-7c37elh6 122 33 is be VBZ cord-001824-7c37elh6 122 34 in in IN cord-001824-7c37elh6 122 35 the the DT cord-001824-7c37elh6 122 36 +1 +1 HYPH cord-001824-7c37elh6 122 37 frame frame NN cord-001824-7c37elh6 122 38 ( ( -LRB- cord-001824-7c37elh6 122 39 Figure figure NN cord-001824-7c37elh6 122 40 _SP cord-001824-7c37elh6 122 41 4A 4a CD cord-001824-7c37elh6 122 42 ) ) -RRB- cord-001824-7c37elh6 122 43 . . . cord-001824-7c37elh6 123 1 To to TO cord-001824-7c37elh6 123 2 obtain obtain VB cord-001824-7c37elh6 123 3 F F NNP cord-001824-7c37elh6 123 4 - - HYPH cord-001824-7c37elh6 123 5 luc luc NNP cord-001824-7c37elh6 123 6 activity activity NN cord-001824-7c37elh6 123 7 the the DT cord-001824-7c37elh6 123 8 ribosome ribosome NN cord-001824-7c37elh6 123 9 must must MD cord-001824-7c37elh6 123 10 shift shift VB cord-001824-7c37elh6 123 11 into into IN cord-001824-7c37elh6 123 12 the the DT cord-001824-7c37elh6 123 13 +1 +1 HYPH cord-001824-7c37elh6 123 14 frame frame NN cord-001824-7c37elh6 123 15 before before IN cord-001824-7c37elh6 123 16 entering enter VBG cord-001824-7c37elh6 123 17 the the DT cord-001824-7c37elh6 123 18 F F NNP cord-001824-7c37elh6 123 19 - - HYPH cord-001824-7c37elh6 123 20 luc luc NNP cord-001824-7c37elh6 123 21 gene gene NN cord-001824-7c37elh6 123 22 . . . cord-001824-7c37elh6 124 1 The the DT cord-001824-7c37elh6 124 2 inserted insert VBN cord-001824-7c37elh6 124 3 sequence sequence NN cord-001824-7c37elh6 124 4 between between IN cord-001824-7c37elh6 124 5 the the DT cord-001824-7c37elh6 124 6 R R NNP cord-001824-7c37elh6 124 7 - - HYPH cord-001824-7c37elh6 124 8 luc luc NNP cord-001824-7c37elh6 124 9 and and CC cord-001824-7c37elh6 124 10 the the DT cord-001824-7c37elh6 124 11 F F NNP cord-001824-7c37elh6 124 12 - - HYPH cord-001824-7c37elh6 124 13 luc luc NNP cord-001824-7c37elh6 124 14 reporter reporter NN cord-001824-7c37elh6 124 15 genes gene NNS cord-001824-7c37elh6 124 16 consists consist VBZ cord-001824-7c37elh6 124 17 of of IN cord-001824-7c37elh6 124 18 a a DT cord-001824-7c37elh6 124 19 slippery slippery JJ cord-001824-7c37elh6 124 20 codon codon NN cord-001824-7c37elh6 124 21 ( ( -LRB- cord-001824-7c37elh6 124 22 XXX XXX NNP cord-001824-7c37elh6 124 23 ) ) -RRB- cord-001824-7c37elh6 124 24 at at IN cord-001824-7c37elh6 124 25 which which WDT cord-001824-7c37elh6 124 26 the the DT cord-001824-7c37elh6 124 27 peptidyl peptidyl NNP cord-001824-7c37elh6 124 28 - - HYPH cord-001824-7c37elh6 124 29 tRNA tRNA NNP cord-001824-7c37elh6 124 30 will will MD cord-001824-7c37elh6 124 31 slip slip VB cord-001824-7c37elh6 124 32 , , , cord-001824-7c37elh6 124 33 the the DT cord-001824-7c37elh6 124 34 codon codon NN cord-001824-7c37elh6 124 35 to to TO cord-001824-7c37elh6 124 36 be be VB cord-001824-7c37elh6 124 37 assayed assay VBN cord-001824-7c37elh6 124 38 for for IN cord-001824-7c37elh6 124 39 A a DT cord-001824-7c37elh6 124 40 - - HYPH cord-001824-7c37elh6 124 41 site site NN cord-001824-7c37elh6 124 42 selection selection NN cord-001824-7c37elh6 124 43 ( ( -LRB- cord-001824-7c37elh6 124 44 NNN NNN NNP cord-001824-7c37elh6 124 45 ) ) -RRB- cord-001824-7c37elh6 124 46 , , , cord-001824-7c37elh6 124 47 followed follow VBN cord-001824-7c37elh6 124 48 by by IN cord-001824-7c37elh6 124 49 a a DT cord-001824-7c37elh6 124 50 stop stop NN cord-001824-7c37elh6 124 51 codon codon NN cord-001824-7c37elh6 124 52 in in IN cord-001824-7c37elh6 124 53 zero zero CD cord-001824-7c37elh6 124 54 frame frame NN cord-001824-7c37elh6 124 55 ( ( -LRB- cord-001824-7c37elh6 124 56 UAG UAG NNP cord-001824-7c37elh6 124 57 ) ) -RRB- cord-001824-7c37elh6 124 58 ( ( -LRB- cord-001824-7c37elh6 124 59 Figure figure NN cord-001824-7c37elh6 124 60 4A 4a CD cord-001824-7c37elh6 124 61 ) ) -RRB- cord-001824-7c37elh6 124 62 . . . cord-001824-7c37elh6 125 1 To to TO cord-001824-7c37elh6 125 2 terminate terminate VB cord-001824-7c37elh6 125 3 all all DT cord-001824-7c37elh6 125 4 ribosomes ribosome NNS cord-001824-7c37elh6 125 5 that that WDT cord-001824-7c37elh6 125 6 have have VBP cord-001824-7c37elh6 125 7 accidentally accidentally RB cord-001824-7c37elh6 125 8 slipped slip VBN cord-001824-7c37elh6 125 9 into into IN cord-001824-7c37elh6 125 10 the the DT cord-001824-7c37elh6 125 11 +1 +1 HYPH cord-001824-7c37elh6 125 12 frame frame NN cord-001824-7c37elh6 125 13 upstream upstream IN cord-001824-7c37elh6 125 14 the the DT cord-001824-7c37elh6 125 15 slippery slippery JJ cord-001824-7c37elh6 125 16 codon codon NN cord-001824-7c37elh6 125 17 , , , cord-001824-7c37elh6 125 18 a a DT cord-001824-7c37elh6 125 19 stop stop NN cord-001824-7c37elh6 125 20 codon codon NN cord-001824-7c37elh6 125 21 was be VBD cord-001824-7c37elh6 125 22 inserted insert VBN cord-001824-7c37elh6 125 23 in in IN cord-001824-7c37elh6 125 24 the the DT cord-001824-7c37elh6 125 25 +1 +1 HYPH cord-001824-7c37elh6 125 26 frame frame NN cord-001824-7c37elh6 125 27 just just RB cord-001824-7c37elh6 125 28 a a DT cord-001824-7c37elh6 125 29 few few JJ cord-001824-7c37elh6 125 30 nucleotides nucleotide NNS cord-001824-7c37elh6 125 31 upstream upstream IN cord-001824-7c37elh6 125 32 the the DT cord-001824-7c37elh6 125 33 slippery slippery JJ cord-001824-7c37elh6 125 34 codon codon NN cord-001824-7c37elh6 126 1 ( ( -LRB- cord-001824-7c37elh6 126 2 See see VB cord-001824-7c37elh6 126 3 Figure Figure NNP cord-001824-7c37elh6 126 4 4 4 CD cord-001824-7c37elh6 126 5 ) ) -RRB- cord-001824-7c37elh6 126 6 . . . cord-001824-7c37elh6 127 1 Thus thus RB cord-001824-7c37elh6 127 2 , , , cord-001824-7c37elh6 127 3 to to TO cord-001824-7c37elh6 127 4 obtain obtain VB cord-001824-7c37elh6 127 5 F F NNP cord-001824-7c37elh6 127 6 - - HYPH cord-001824-7c37elh6 127 7 luc luc NNP cord-001824-7c37elh6 127 8 activity activity NN cord-001824-7c37elh6 127 9 a a DT cord-001824-7c37elh6 127 10 +1 +1 XX cord-001824-7c37elh6 127 11 frameshift frameshift NN cord-001824-7c37elh6 127 12 must must MD cord-001824-7c37elh6 127 13 occur occur VB cord-001824-7c37elh6 127 14 at at IN cord-001824-7c37elh6 127 15 the the DT cord-001824-7c37elh6 127 16 +1 +1 XX cord-001824-7c37elh6 127 17 frameshift frameshift NN cord-001824-7c37elh6 127 18 sequence sequence NN cord-001824-7c37elh6 127 19 upstream upstream RB cord-001824-7c37elh6 127 20 of of IN cord-001824-7c37elh6 127 21 the the DT cord-001824-7c37elh6 127 22 stop stop NN cord-001824-7c37elh6 127 23 codon codon NN cord-001824-7c37elh6 127 24 in in IN cord-001824-7c37elh6 127 25 the the DT cord-001824-7c37elh6 127 26 zero zero CD cord-001824-7c37elh6 127 27 frame frame NN cord-001824-7c37elh6 127 28 . . . cord-001824-7c37elh6 128 1 This this DT cord-001824-7c37elh6 128 2 construct construct VB cord-001824-7c37elh6 128 3 results result NNS cord-001824-7c37elh6 128 4 in in IN cord-001824-7c37elh6 128 5 a a DT cord-001824-7c37elh6 128 6 very very RB cord-001824-7c37elh6 128 7 short short JJ cord-001824-7c37elh6 128 8 frameshifting frameshifte VBG cord-001824-7c37elh6 128 9 window window NN cord-001824-7c37elh6 128 10 between between IN cord-001824-7c37elh6 128 11 the the DT cord-001824-7c37elh6 128 12 upstream upstream JJ cord-001824-7c37elh6 128 13 stop stop NN cord-001824-7c37elh6 128 14 codon codon NN cord-001824-7c37elh6 128 15 in in IN cord-001824-7c37elh6 128 16 the the DT cord-001824-7c37elh6 128 17 +1 +1 HYPH cord-001824-7c37elh6 128 18 frame frame NN cord-001824-7c37elh6 128 19 and and CC cord-001824-7c37elh6 128 20 the the DT cord-001824-7c37elh6 128 21 downstream downstream NN cord-001824-7c37elh6 128 22 in in IN cord-001824-7c37elh6 128 23 - - HYPH cord-001824-7c37elh6 128 24 frame frame NN cord-001824-7c37elh6 128 25 stop stop NN cord-001824-7c37elh6 128 26 codon codon NN cord-001824-7c37elh6 128 27 . . . cord-001824-7c37elh6 129 1 The the DT cord-001824-7c37elh6 129 2 slippery slippery JJ cord-001824-7c37elh6 129 3 codon codon NN cord-001824-7c37elh6 129 4 is be VBZ cord-001824-7c37elh6 129 5 determined determine VBN cord-001824-7c37elh6 129 6 individually individually RB cord-001824-7c37elh6 129 7 for for IN cord-001824-7c37elh6 129 8 different different JJ cord-001824-7c37elh6 129 9 assay assay NN cord-001824-7c37elh6 129 10 sites site NNS cord-001824-7c37elh6 129 11 in in IN cord-001824-7c37elh6 129 12 order order NN cord-001824-7c37elh6 129 13 to to TO cord-001824-7c37elh6 129 14 optimize optimize VB cord-001824-7c37elh6 129 15 the the DT cord-001824-7c37elh6 129 16 slippage slippage NN cord-001824-7c37elh6 129 17 of of IN cord-001824-7c37elh6 129 18 the the DT cord-001824-7c37elh6 129 19 peptidyl peptidyl NNP cord-001824-7c37elh6 129 20 tRNA tRNA NNP cord-001824-7c37elh6 129 21 at at IN cord-001824-7c37elh6 129 22 the the DT cord-001824-7c37elh6 129 23 P p NN cord-001824-7c37elh6 129 24 - - HYPH cord-001824-7c37elh6 129 25 site site NN cord-001824-7c37elh6 129 26 . . . cord-001824-7c37elh6 130 1 We -PRON- PRP cord-001824-7c37elh6 130 2 chose choose VBD cord-001824-7c37elh6 130 3 UUU UUU NNP cord-001824-7c37elh6 130 4 , , , cord-001824-7c37elh6 130 5 CCC CCC NNP cord-001824-7c37elh6 130 6 or or CC cord-001824-7c37elh6 130 7 GGG GGG NNP cord-001824-7c37elh6 130 8 codons codon NNS cord-001824-7c37elh6 130 9 as as IN cord-001824-7c37elh6 130 10 the the DT cord-001824-7c37elh6 130 11 slippery slippery JJ cord-001824-7c37elh6 130 12 codons codon NNS cord-001824-7c37elh6 130 13 ( ( -LRB- cord-001824-7c37elh6 130 14 Supplementary supplementary JJ cord-001824-7c37elh6 130 15 Figure Figure NNP cord-001824-7c37elh6 130 16 S1 S1 NNP cord-001824-7c37elh6 130 17 and and CC cord-001824-7c37elh6 130 18 Table Table NNP cord-001824-7c37elh6 130 19 _SP cord-001824-7c37elh6 130 20 2 2 CD cord-001824-7c37elh6 130 21 and and CC cord-001824-7c37elh6 130 22 Supplementary Supplementary NNP cord-001824-7c37elh6 130 23 Table Table NNP cord-001824-7c37elh6 130 24 S1 S1 NNP cord-001824-7c37elh6 130 25 ) ) -RRB- cord-001824-7c37elh6 130 26 . . . cord-001824-7c37elh6 131 1 Codon Codon NNP cord-001824-7c37elh6 131 2 UUU UUU NNP cord-001824-7c37elh6 131 3 is be VBZ cord-001824-7c37elh6 131 4 decoded decode VBN cord-001824-7c37elh6 131 5 by by IN cord-001824-7c37elh6 131 6 tRNA trna NN cord-001824-7c37elh6 131 7 Phe Phe NNP cord-001824-7c37elh6 131 8 GAA GAA NNP cord-001824-7c37elh6 131 9 , , , cord-001824-7c37elh6 131 10 which which WDT cord-001824-7c37elh6 131 11 has have VBZ cord-001824-7c37elh6 131 12 the the DT cord-001824-7c37elh6 131 13 wobble wobble NN cord-001824-7c37elh6 131 14 nucleoside nucleoside RB cord-001824-7c37elh6 132 1 Gm Gm NNP cord-001824-7c37elh6 132 2 34 34 CD cord-001824-7c37elh6 132 3 ( ( -LRB- cord-001824-7c37elh6 132 4 42 42 CD cord-001824-7c37elh6 132 5 ) ) -RRB- cord-001824-7c37elh6 132 6 , , , cord-001824-7c37elh6 132 7 and and CC cord-001824-7c37elh6 132 8 its -PRON- PRP$ cord-001824-7c37elh6 132 9 structure structure NN cord-001824-7c37elh6 132 10 is be VBZ cord-001824-7c37elh6 132 11 not not RB cord-001824-7c37elh6 132 12 affected affect VBN cord-001824-7c37elh6 132 13 by by IN cord-001824-7c37elh6 132 14 the the DT cord-001824-7c37elh6 132 15 elp3 elp3 NN cord-001824-7c37elh6 132 16 , , , cord-001824-7c37elh6 132 17 tuc1 tuc1 IN cord-001824-7c37elh6 132 18 or or CC cord-001824-7c37elh6 132 19 trm9 trm9 NN cord-001824-7c37elh6 132 20 mutations mutation NNS cord-001824-7c37elh6 132 21 . . . cord-001824-7c37elh6 133 1 Codon Codon NNP cord-001824-7c37elh6 133 2 CCC CCC NNP cord-001824-7c37elh6 133 3 is be VBZ cord-001824-7c37elh6 133 4 read read VBN cord-001824-7c37elh6 133 5 by by IN cord-001824-7c37elh6 133 6 the the DT cord-001824-7c37elh6 133 7 I I NNP cord-001824-7c37elh6 133 8 34 34 CD cord-001824-7c37elh6 133 9 ( ( -LRB- cord-001824-7c37elh6 133 10 inosine inosine NNP cord-001824-7c37elh6 133 11 ) ) -RRB- cord-001824-7c37elh6 133 12 containing contain VBG cord-001824-7c37elh6 133 13 tRNA tRNA NNP cord-001824-7c37elh6 133 14 Pro Pro NNP cord-001824-7c37elh6 133 15 IGG IGG NNP cord-001824-7c37elh6 133 16 and and CC cord-001824-7c37elh6 133 17 the the DT cord-001824-7c37elh6 133 18 ncm ncm NNP cord-001824-7c37elh6 133 19 5 5 CD cord-001824-7c37elh6 133 20 U U NNP cord-001824-7c37elh6 133 21 34 34 CD cord-001824-7c37elh6 133 22 containing contain VBG cord-001824-7c37elh6 133 23 tRNA trna NN cord-001824-7c37elh6 133 24 Pro pro JJ cord-001824-7c37elh6 133 25 ncm ncm NNP cord-001824-7c37elh6 133 26 5 5 CD cord-001824-7c37elh6 133 27 UGG UGG NNP cord-001824-7c37elh6 133 28 and and CC cord-001824-7c37elh6 133 29 the the DT cord-001824-7c37elh6 133 30 slippery slippery JJ cord-001824-7c37elh6 133 31 codon codon NN cord-001824-7c37elh6 133 32 GGG GGG NNP cord-001824-7c37elh6 133 33 is be VBZ cord-001824-7c37elh6 133 34 read read VBN cord-001824-7c37elh6 133 35 by by IN cord-001824-7c37elh6 133 36 the the DT cord-001824-7c37elh6 133 37 mcm mcm NNP cord-001824-7c37elh6 133 38 5 5 CD cord-001824-7c37elh6 133 39 U U NNP cord-001824-7c37elh6 133 40 34 34 CD cord-001824-7c37elh6 133 41 containing contain VBG cord-001824-7c37elh6 133 42 tRNA tRNA NNP cord-001824-7c37elh6 133 43 Gly Gly NNP cord-001824-7c37elh6 133 44 mcm mcm NNP cord-001824-7c37elh6 133 45 5 5 CD cord-001824-7c37elh6 133 46 UCC UCC NNP cord-001824-7c37elh6 133 47 and and CC cord-001824-7c37elh6 133 48 the the DT cord-001824-7c37elh6 133 49 C C NNP cord-001824-7c37elh6 133 50 34 34 CD cord-001824-7c37elh6 133 51 containing contain VBG cord-001824-7c37elh6 133 52 tRNA tRNA NNP cord-001824-7c37elh6 133 53 Gly Gly NNP cord-001824-7c37elh6 133 54 CCC CCC NNP cord-001824-7c37elh6 133 55 ( ( -LRB- cord-001824-7c37elh6 133 56 Figure figure NN cord-001824-7c37elh6 133 57 3 3 CD cord-001824-7c37elh6 133 58 ) ) -RRB- cord-001824-7c37elh6 133 59 ( ( -LRB- cord-001824-7c37elh6 133 60 26 26 CD cord-001824-7c37elh6 133 61 , , , cord-001824-7c37elh6 133 62 30 30 CD cord-001824-7c37elh6 133 63 , , , cord-001824-7c37elh6 133 64 43 43 CD cord-001824-7c37elh6 133 65 ) ) -RRB- cord-001824-7c37elh6 133 66 . . . cord-001824-7c37elh6 134 1 Note note VB cord-001824-7c37elh6 134 2 that that IN cord-001824-7c37elh6 134 3 the the DT cord-001824-7c37elh6 134 4 structures structure NNS cord-001824-7c37elh6 134 5 of of IN cord-001824-7c37elh6 134 6 the the DT cord-001824-7c37elh6 134 7 ncm ncm NNP cord-001824-7c37elh6 134 8 5 5 CD cord-001824-7c37elh6 134 9 U U NNP cord-001824-7c37elh6 134 10 containing contain VBG cord-001824-7c37elh6 134 11 tRNA tRNA NNP cord-001824-7c37elh6 134 12 Pro pro JJ cord-001824-7c37elh6 134 13 ncm ncm NNP cord-001824-7c37elh6 134 14 5 5 CD cord-001824-7c37elh6 134 15 UGG UGG NNP cord-001824-7c37elh6 134 16 reading read VBG cord-001824-7c37elh6 134 17 the the DT cord-001824-7c37elh6 134 18 slippery slippery JJ cord-001824-7c37elh6 134 19 codon codon NN cord-001824-7c37elh6 134 20 CCC CCC NNP cord-001824-7c37elh6 134 21 and and CC cord-001824-7c37elh6 134 22 the the DT cord-001824-7c37elh6 134 23 mcm mcm NNP cord-001824-7c37elh6 134 24 5 5 CD cord-001824-7c37elh6 134 25 U U NNP cord-001824-7c37elh6 134 26 34 34 CD cord-001824-7c37elh6 134 27 containing contain VBG cord-001824-7c37elh6 134 28 tRNA tRNA NNP cord-001824-7c37elh6 134 29 Gly Gly NNP cord-001824-7c37elh6 134 30 mcm mcm NNP cord-001824-7c37elh6 134 31 5 5 CD cord-001824-7c37elh6 134 32 UCC UCC NNP cord-001824-7c37elh6 134 33 reading read VBG cord-001824-7c37elh6 134 34 the the DT cord-001824-7c37elh6 134 35 slippery slippery JJ cord-001824-7c37elh6 134 36 codon codon NN cord-001824-7c37elh6 134 37 GGG GGG NNP cord-001824-7c37elh6 134 38 are be VBP cord-001824-7c37elh6 134 39 affected affect VBN cord-001824-7c37elh6 134 40 by by IN cord-001824-7c37elh6 134 41 the the DT cord-001824-7c37elh6 134 42 elp3 elp3 NNP cord-001824-7c37elh6 134 43 mutation mutation NN cord-001824-7c37elh6 134 44 and and CC cord-001824-7c37elh6 134 45 might may MD cord-001824-7c37elh6 134 46 therefore therefore RB cord-001824-7c37elh6 134 47 obscure obscure VB cord-001824-7c37elh6 134 48 the the DT cord-001824-7c37elh6 134 49 monitoring monitoring NN cord-001824-7c37elh6 134 50 of of IN cord-001824-7c37elh6 134 51 an an DT cord-001824-7c37elh6 134 52 A A NNP cord-001824-7c37elh6 134 53 - - HYPH cord-001824-7c37elh6 134 54 site site NN cord-001824-7c37elh6 134 55 effect effect NN cord-001824-7c37elh6 134 56 at at IN cord-001824-7c37elh6 134 57 these these DT cord-001824-7c37elh6 134 58 test test NN cord-001824-7c37elh6 134 59 codons codon NNS cord-001824-7c37elh6 134 60 . . . cord-001824-7c37elh6 135 1 These these DT cord-001824-7c37elh6 135 2 issues issue NNS cord-001824-7c37elh6 135 3 will will MD cord-001824-7c37elh6 135 4 be be VB cord-001824-7c37elh6 135 5 addressed address VBN cord-001824-7c37elh6 135 6 below below RB cord-001824-7c37elh6 135 7 . . . cord-001824-7c37elh6 136 1 As as IN cord-001824-7c37elh6 136 2 a a DT cord-001824-7c37elh6 136 3 control control NN cord-001824-7c37elh6 136 4 , , , cord-001824-7c37elh6 136 5 we -PRON- PRP cord-001824-7c37elh6 136 6 used use VBD cord-001824-7c37elh6 136 7 a a DT cord-001824-7c37elh6 136 8 construct construct NN cord-001824-7c37elh6 136 9 carrying carry VBG cord-001824-7c37elh6 136 10 the the DT cord-001824-7c37elh6 136 11 R R NNP cord-001824-7c37elh6 136 12 - - HYPH cord-001824-7c37elh6 136 13 luc luc NNP cord-001824-7c37elh6 136 14 and and CC cord-001824-7c37elh6 136 15 F F NNP cord-001824-7c37elh6 136 16 - - HYPH cord-001824-7c37elh6 136 17 luc luc NNP cord-001824-7c37elh6 136 18 genes gene NNS cord-001824-7c37elh6 136 19 in in IN cord-001824-7c37elh6 136 20 - - HYPH cord-001824-7c37elh6 136 21 frame frame NN cord-001824-7c37elh6 136 22 . . . cord-001824-7c37elh6 137 1 By by IN cord-001824-7c37elh6 137 2 dividing divide VBG cord-001824-7c37elh6 137 3 the the DT cord-001824-7c37elh6 137 4 ratio ratio NN cord-001824-7c37elh6 137 5 of of IN cord-001824-7c37elh6 137 6 F F NNP cord-001824-7c37elh6 137 7 - - HYPH cord-001824-7c37elh6 137 8 luc luc NNP cord-001824-7c37elh6 137 9 / / SYM cord-001824-7c37elh6 137 10 R R NNP cord-001824-7c37elh6 137 11 - - HYPH cord-001824-7c37elh6 137 12 luc luc NNP cord-001824-7c37elh6 137 13 activities activity NNS cord-001824-7c37elh6 137 14 generated generate VBN cord-001824-7c37elh6 137 15 from from IN cord-001824-7c37elh6 137 16 the the DT cord-001824-7c37elh6 137 17 frameshifting frameshifte VBG cord-001824-7c37elh6 137 18 construct construct NN cord-001824-7c37elh6 137 19 with with IN cord-001824-7c37elh6 137 20 the the DT cord-001824-7c37elh6 137 21 ratio ratio NN cord-001824-7c37elh6 137 22 of of IN cord-001824-7c37elh6 137 23 activities activity NNS cord-001824-7c37elh6 137 24 from from IN cord-001824-7c37elh6 137 25 the the DT cord-001824-7c37elh6 137 26 F F NNP cord-001824-7c37elh6 137 27 - - HYPH cord-001824-7c37elh6 137 28 luc luc NNP cord-001824-7c37elh6 137 29 / / SYM cord-001824-7c37elh6 137 30 R R NNP cord-001824-7c37elh6 137 31 - - HYPH cord-001824-7c37elh6 137 32 luc luc NNP cord-001824-7c37elh6 137 33 in in IN cord-001824-7c37elh6 137 34 - - HYPH cord-001824-7c37elh6 137 35 frame frame NN cord-001824-7c37elh6 137 36 control control NN cord-001824-7c37elh6 137 37 , , , cord-001824-7c37elh6 137 38 the the DT cord-001824-7c37elh6 137 39 level level NN cord-001824-7c37elh6 137 40 of of IN cord-001824-7c37elh6 137 41 frameshifting frameshifting NN cord-001824-7c37elh6 137 42 was be VBD cord-001824-7c37elh6 137 43 revealed reveal VBN cord-001824-7c37elh6 137 44 . . . cord-001824-7c37elh6 138 1 Using use VBG cord-001824-7c37elh6 138 2 these these DT cord-001824-7c37elh6 138 3 reporter reporter NN cord-001824-7c37elh6 138 4 systems system NNS cord-001824-7c37elh6 138 5 , , , cord-001824-7c37elh6 138 6 the the DT cord-001824-7c37elh6 138 7 level level NN cord-001824-7c37elh6 138 8 of of IN cord-001824-7c37elh6 138 9 frameshifting frameshifte VBG cord-001824-7c37elh6 138 10 for for IN cord-001824-7c37elh6 138 11 specific specific JJ cord-001824-7c37elh6 138 12 tRNA tRNA NNP cord-001824-7c37elh6 138 13 isoacceptors isoacceptor NNS cord-001824-7c37elh6 138 14 was be VBD cord-001824-7c37elh6 138 15 investigated investigate VBN cord-001824-7c37elh6 138 16 in in IN cord-001824-7c37elh6 138 17 the the DT cord-001824-7c37elh6 138 18 presence presence NN cord-001824-7c37elh6 138 19 or or CC cord-001824-7c37elh6 138 20 absence absence NN cord-001824-7c37elh6 138 21 of of IN cord-001824-7c37elh6 138 22 s s NNP cord-001824-7c37elh6 138 23 2 2 CD cord-001824-7c37elh6 138 24 , , , cord-001824-7c37elh6 138 25 ncm ncm NNP cord-001824-7c37elh6 138 26 5 5 CD cord-001824-7c37elh6 138 27 , , , cord-001824-7c37elh6 138 28 mcm mcm NNP cord-001824-7c37elh6 138 29 5 5 CD cord-001824-7c37elh6 138 30 groups group NNS cord-001824-7c37elh6 138 31 or or CC cord-001824-7c37elh6 138 32 the the DT cord-001824-7c37elh6 138 33 esterified esterify VBN cord-001824-7c37elh6 138 34 methyl methyl NN cord-001824-7c37elh6 138 35 group group NN cord-001824-7c37elh6 138 36 of of IN cord-001824-7c37elh6 138 37 the the DT cord-001824-7c37elh6 138 38 mcm mcm NNP cord-001824-7c37elh6 138 39 5 5 CD cord-001824-7c37elh6 138 40 side side NN cord-001824-7c37elh6 138 41 chain chain NN cord-001824-7c37elh6 138 42 at at IN cord-001824-7c37elh6 138 43 U U NNP cord-001824-7c37elh6 138 44 34 34 CD cord-001824-7c37elh6 138 45 . . . cord-001824-7c37elh6 139 1 In in IN cord-001824-7c37elh6 139 2 the the DT cord-001824-7c37elh6 139 3 bacterial bacterial JJ cord-001824-7c37elh6 139 4 system system NN cord-001824-7c37elh6 139 5 , , , cord-001824-7c37elh6 139 6 modification modification NN cord-001824-7c37elh6 139 7 deficiency deficiency NN cord-001824-7c37elh6 139 8 of of IN cord-001824-7c37elh6 139 9 aminoacyl aminoacyl NNP cord-001824-7c37elh6 139 10 - - HYPH cord-001824-7c37elh6 139 11 tRNA trna NN cord-001824-7c37elh6 139 12 in in IN cord-001824-7c37elh6 139 13 the the DT cord-001824-7c37elh6 139 14 ternary ternary JJ cord-001824-7c37elh6 139 15 complex complex JJ cord-001824-7c37elh6 139 16 causes cause NNS cord-001824-7c37elh6 139 17 in in IN cord-001824-7c37elh6 139 18 most most JJS cord-001824-7c37elh6 139 19 cases case NNS cord-001824-7c37elh6 139 20 a a DT cord-001824-7c37elh6 139 21 slow slow JJ cord-001824-7c37elh6 139 22 entry entry NN cord-001824-7c37elh6 139 23 of of IN cord-001824-7c37elh6 139 24 it -PRON- PRP cord-001824-7c37elh6 139 25 to to IN cord-001824-7c37elh6 139 26 the the DT cord-001824-7c37elh6 139 27 A A NNP cord-001824-7c37elh6 139 28 - - HYPH cord-001824-7c37elh6 139 29 site site NN cord-001824-7c37elh6 139 30 and and CC cord-001824-7c37elh6 139 31 thereby thereby RB cord-001824-7c37elh6 139 32 induces induce VBZ cord-001824-7c37elh6 139 33 a a DT cord-001824-7c37elh6 139 34 peptidyl peptidyl JJ cord-001824-7c37elh6 139 35 - - HYPH cord-001824-7c37elh6 139 36 tRNA trna NN cord-001824-7c37elh6 139 37 slippage slippage NN cord-001824-7c37elh6 139 38 ( ( -LRB- cord-001824-7c37elh6 139 39 Figure figure NN cord-001824-7c37elh6 139 40 1A 1a NN cord-001824-7c37elh6 139 41 and and CC cord-001824-7c37elh6 139 42 B b NN cord-001824-7c37elh6 139 43 ) ) -RRB- cord-001824-7c37elh6 139 44 ( ( -LRB- cord-001824-7c37elh6 139 45 6 6 CD cord-001824-7c37elh6 139 46 ) ) -RRB- cord-001824-7c37elh6 139 47 . . . cord-001824-7c37elh6 140 1 Therefore therefore RB cord-001824-7c37elh6 140 2 , , , cord-001824-7c37elh6 140 3 we -PRON- PRP cord-001824-7c37elh6 140 4 suspected suspect VBD cord-001824-7c37elh6 140 5 that that IN cord-001824-7c37elh6 140 6 in in IN cord-001824-7c37elh6 140 7 the the DT cord-001824-7c37elh6 140 8 cases case NNS cord-001824-7c37elh6 140 9 below below IN cord-001824-7c37elh6 140 10 where where WRB cord-001824-7c37elh6 140 11 we -PRON- PRP cord-001824-7c37elh6 140 12 observed observe VBD cord-001824-7c37elh6 140 13 an an DT cord-001824-7c37elh6 140 14 effect effect NN cord-001824-7c37elh6 140 15 on on IN cord-001824-7c37elh6 140 16 the the DT cord-001824-7c37elh6 140 17 frequency frequency NN cord-001824-7c37elh6 140 18 of of IN cord-001824-7c37elh6 140 19 frameshifting frameshifte VBG cord-001824-7c37elh6 140 20 in in IN cord-001824-7c37elh6 140 21 the the DT cord-001824-7c37elh6 140 22 modification modification NN cord-001824-7c37elh6 140 23 deficient deficient JJ cord-001824-7c37elh6 140 24 mutants mutant NNS cord-001824-7c37elh6 140 25 , , , cord-001824-7c37elh6 140 26 it -PRON- PRP cord-001824-7c37elh6 140 27 would would MD cord-001824-7c37elh6 140 28 primarily primarily RB cord-001824-7c37elh6 140 29 be be VB cord-001824-7c37elh6 140 30 due due JJ cord-001824-7c37elh6 140 31 to to IN cord-001824-7c37elh6 140 32 an an DT cord-001824-7c37elh6 140 33 A a NN cord-001824-7c37elh6 140 34 - - HYPH cord-001824-7c37elh6 140 35 site site NN cord-001824-7c37elh6 140 36 effect effect NN cord-001824-7c37elh6 140 37 , , , cord-001824-7c37elh6 140 38 i.e. i.e. FW cord-001824-7c37elh6 140 39 slow slow JJ cord-001824-7c37elh6 140 40 entry entry NN cord-001824-7c37elh6 140 41 of of IN cord-001824-7c37elh6 140 42 the the DT cord-001824-7c37elh6 140 43 ternary ternary JJ cord-001824-7c37elh6 140 44 complex complex NN cord-001824-7c37elh6 140 45 containing contain VBG cord-001824-7c37elh6 140 46 aminoacyl aminoacyl NNP cord-001824-7c37elh6 140 47 - - HYPH cord-001824-7c37elh6 140 48 tRNA trna NN cord-001824-7c37elh6 140 49 cognate cognate NN cord-001824-7c37elh6 140 50 to to IN cord-001824-7c37elh6 140 51 the the DT cord-001824-7c37elh6 140 52 test test NN cord-001824-7c37elh6 140 53 codon codon NN cord-001824-7c37elh6 140 54 allowing allow VBG cord-001824-7c37elh6 140 55 a a DT cord-001824-7c37elh6 140 56 peptidyl peptidyl NNP cord-001824-7c37elh6 140 57 - - HYPH cord-001824-7c37elh6 140 58 tRNA trna NN cord-001824-7c37elh6 140 59 interacting interact VBG cord-001824-7c37elh6 140 60 with with IN cord-001824-7c37elh6 140 61 the the DT cord-001824-7c37elh6 140 62 slippery slippery JJ cord-001824-7c37elh6 140 63 codon codon NN cord-001824-7c37elh6 140 64 XXX XXX NNP cord-001824-7c37elh6 140 65 to to TO cord-001824-7c37elh6 140 66 slip slip VB cord-001824-7c37elh6 140 67 ( ( -LRB- cord-001824-7c37elh6 140 68 Figure figure NN cord-001824-7c37elh6 140 69 1A 1a NN cord-001824-7c37elh6 140 70 and and CC cord-001824-7c37elh6 140 71 B B NNP cord-001824-7c37elh6 140 72 ) ) -RRB- cord-001824-7c37elh6 140 73 . . . cord-001824-7c37elh6 141 1 In in IN cord-001824-7c37elh6 141 2 the the DT cord-001824-7c37elh6 141 3 constructs construct NNS cord-001824-7c37elh6 141 4 used use VBN cord-001824-7c37elh6 141 5 , , , cord-001824-7c37elh6 141 6 all all DT cord-001824-7c37elh6 141 7 have have VBP cord-001824-7c37elh6 141 8 a a DT cord-001824-7c37elh6 141 9 UAG UAG NNP cord-001824-7c37elh6 141 10 stop stop NN cord-001824-7c37elh6 141 11 codon codon NN cord-001824-7c37elh6 141 12 just just RB cord-001824-7c37elh6 141 13 after after IN cord-001824-7c37elh6 141 14 the the DT cord-001824-7c37elh6 141 15 test test NN cord-001824-7c37elh6 141 16 codon codon NN cord-001824-7c37elh6 141 17 NNN NNN NNP cord-001824-7c37elh6 142 1 ( ( -LRB- cord-001824-7c37elh6 142 2 i.e. i.e. FW cord-001824-7c37elh6 142 3 the the DT cord-001824-7c37elh6 142 4 sequence sequence NN cord-001824-7c37elh6 142 5 is be VBZ cord-001824-7c37elh6 142 6 in in IN cord-001824-7c37elh6 142 7 zero zero CD cord-001824-7c37elh6 142 8 frame frame NN cord-001824-7c37elh6 142 9 -XXX -xxx ADD cord-001824-7c37elh6 142 10 - - HYPH cord-001824-7c37elh6 142 11 NNN NNN NNP cord-001824-7c37elh6 142 12 - - HYPH cord-001824-7c37elh6 142 13 UAG UAG NNP cord-001824-7c37elh6 142 14 ) ) -RRB- cord-001824-7c37elh6 142 15 . . . cord-001824-7c37elh6 143 1 Translational translational JJ cord-001824-7c37elh6 143 2 termination termination NN cord-001824-7c37elh6 143 3 in in IN cord-001824-7c37elh6 143 4 yeast yeast NN cord-001824-7c37elh6 143 5 is be VBZ cord-001824-7c37elh6 143 6 controlled control VBN cord-001824-7c37elh6 143 7 by by IN cord-001824-7c37elh6 143 8 two two CD cord-001824-7c37elh6 143 9 interacting interact VBG cord-001824-7c37elh6 143 10 protein protein NN cord-001824-7c37elh6 143 11 chain chain NN cord-001824-7c37elh6 143 12 release release NN cord-001824-7c37elh6 143 13 factors factor NNS cord-001824-7c37elh6 143 14 , , , cord-001824-7c37elh6 143 15 eRF1 eRF1 NNP cord-001824-7c37elh6 143 16 and and CC cord-001824-7c37elh6 143 17 eRF3 eRF3 NNP cord-001824-7c37elh6 143 18 . . . cord-001824-7c37elh6 144 1 Whereas whereas IN cord-001824-7c37elh6 144 2 eRF1 eRF1 NNP cord-001824-7c37elh6 144 3 recognizes recognize VBZ cord-001824-7c37elh6 144 4 all all DT cord-001824-7c37elh6 144 5 three three CD cord-001824-7c37elh6 144 6 stop stop NN cord-001824-7c37elh6 144 7 codons codon NNS cord-001824-7c37elh6 144 8 , , , cord-001824-7c37elh6 144 9 binds bind VBZ cord-001824-7c37elh6 144 10 to to IN cord-001824-7c37elh6 144 11 ribosomal ribosomal JJ cord-001824-7c37elh6 144 12 Asite Asite NNP cord-001824-7c37elh6 144 13 , , , cord-001824-7c37elh6 144 14 and and CC cord-001824-7c37elh6 144 15 promotes promote VBZ cord-001824-7c37elh6 144 16 hydrolysis hydrolysis NN cord-001824-7c37elh6 144 17 of of IN cord-001824-7c37elh6 144 18 the the DT cord-001824-7c37elh6 144 19 P p NN cord-001824-7c37elh6 144 20 - - HYPH cord-001824-7c37elh6 144 21 site site NN cord-001824-7c37elh6 144 22 located locate VBN cord-001824-7c37elh6 144 23 peptidyl peptidyl NNP cord-001824-7c37elh6 144 24 - - HYPH cord-001824-7c37elh6 144 25 tRNA tRNA NNP cord-001824-7c37elh6 144 26 , , , cord-001824-7c37elh6 144 27 eRF3 eRF3 NNP cord-001824-7c37elh6 144 28 stimulates stimulate VBZ cord-001824-7c37elh6 144 29 the the DT cord-001824-7c37elh6 144 30 termination termination NN cord-001824-7c37elh6 144 31 activity activity NN cord-001824-7c37elh6 144 32 of of IN cord-001824-7c37elh6 144 33 eRF1 eRF1 NNP cord-001824-7c37elh6 145 1 ( ( -LRB- cord-001824-7c37elh6 145 2 Reviewed review VBN cord-001824-7c37elh6 145 3 in in IN cord-001824-7c37elh6 145 4 Kisselev Kisselev NNP cord-001824-7c37elh6 145 5 and and CC cord-001824-7c37elh6 145 6 Buckingham Buckingham NNP cord-001824-7c37elh6 145 7 ( ( -LRB- cord-001824-7c37elh6 145 8 44 44 CD cord-001824-7c37elh6 145 9 ) ) -RRB- cord-001824-7c37elh6 145 10 ) ) -RRB- cord-001824-7c37elh6 145 11 . . . cord-001824-7c37elh6 146 1 A a DT cord-001824-7c37elh6 146 2 poor poor JJ cord-001824-7c37elh6 146 3 eRF1 eRF1 NNP cord-001824-7c37elh6 146 4 binding bind VBG cord-001824-7c37elh6 146 5 to to IN cord-001824-7c37elh6 146 6 the the DT cord-001824-7c37elh6 146 7 UAG UAG NNP cord-001824-7c37elh6 146 8 in in IN cord-001824-7c37elh6 146 9 the the DT cord-001824-7c37elh6 146 10 A A NNP cord-001824-7c37elh6 146 11 - - HYPH cord-001824-7c37elh6 146 12 site site NN cord-001824-7c37elh6 146 13 may may MD cord-001824-7c37elh6 146 14 induce induce VB cord-001824-7c37elh6 146 15 slippage slippage NN cord-001824-7c37elh6 146 16 by by IN cord-001824-7c37elh6 146 17 the the DT cord-001824-7c37elh6 146 18 modification modification NN cord-001824-7c37elh6 146 19 deficient deficient JJ cord-001824-7c37elh6 146 20 peptidyl peptidyl NNP cord-001824-7c37elh6 146 21 - - HYPH cord-001824-7c37elh6 146 22 tRNA tRNA NNP cord-001824-7c37elh6 146 23 from from IN cord-001824-7c37elh6 146 24 cognate cognate JJ cord-001824-7c37elh6 146 25 NNN nnn NN cord-001824-7c37elh6 146 26 codon codon NN cord-001824-7c37elh6 146 27 to to IN cord-001824-7c37elh6 146 28 NN NN NNP cord-001824-7c37elh6 146 29 - - HYPH cord-001824-7c37elh6 146 30 U U NNP cord-001824-7c37elh6 146 31 codon codon NN cord-001824-7c37elh6 146 32 . . . cord-001824-7c37elh6 147 1 Therefore therefore RB cord-001824-7c37elh6 147 2 , , , cord-001824-7c37elh6 147 3 the the DT cord-001824-7c37elh6 147 4 +1 +1 XX cord-001824-7c37elh6 147 5 frameshifting frameshifting NN cord-001824-7c37elh6 147 6 observed observe VBD cord-001824-7c37elh6 147 7 using use VBG cord-001824-7c37elh6 147 8 the the DT cord-001824-7c37elh6 147 9 luciferase luciferase NN cord-001824-7c37elh6 147 10 assay assay NN cord-001824-7c37elh6 147 11 may may MD cord-001824-7c37elh6 147 12 be be VB cord-001824-7c37elh6 147 13 caused cause VBN cord-001824-7c37elh6 147 14 by by IN cord-001824-7c37elh6 147 15 either either CC cord-001824-7c37elh6 147 16 an an DT cord-001824-7c37elh6 147 17 A A NNP cord-001824-7c37elh6 147 18 - - HYPH cord-001824-7c37elh6 147 19 site site NN cord-001824-7c37elh6 147 20 or or CC cord-001824-7c37elh6 147 21 a a DT cord-001824-7c37elh6 147 22 P p NN cord-001824-7c37elh6 147 23 - - HYPH cord-001824-7c37elh6 147 24 site site NN cord-001824-7c37elh6 147 25 effect effect NN cord-001824-7c37elh6 147 26 or or CC cord-001824-7c37elh6 147 27 both both DT cord-001824-7c37elh6 147 28 . . . cord-001824-7c37elh6 148 1 Note note VB cord-001824-7c37elh6 148 2 that that IN cord-001824-7c37elh6 148 3 , , , cord-001824-7c37elh6 148 4 in in IN cord-001824-7c37elh6 148 5 all all PDT cord-001824-7c37elh6 148 6 these these DT cord-001824-7c37elh6 148 7 cases case NNS cord-001824-7c37elh6 148 8 the the DT cord-001824-7c37elh6 148 9 error error NN cord-001824-7c37elh6 148 10 occurs occur VBZ cord-001824-7c37elh6 148 11 in in IN cord-001824-7c37elh6 148 12 the the DT cord-001824-7c37elh6 148 13 P p NN cord-001824-7c37elh6 148 14 - - HYPH cord-001824-7c37elh6 148 15 site site NN cord-001824-7c37elh6 148 16 ( ( -LRB- cord-001824-7c37elh6 148 17 either either CC cord-001824-7c37elh6 148 18 by by IN cord-001824-7c37elh6 148 19 the the DT cord-001824-7c37elh6 148 20 tRNA trna NN cord-001824-7c37elh6 148 21 reading read VBG cord-001824-7c37elh6 148 22 the the DT cord-001824-7c37elh6 148 23 slippery slippery JJ cord-001824-7c37elh6 148 24 codon codon NN cord-001824-7c37elh6 148 25 or or CC cord-001824-7c37elh6 148 26 a a DT cord-001824-7c37elh6 148 27 tRNA trna NN cord-001824-7c37elh6 148 28 cognate cognate JJ cord-001824-7c37elh6 148 29 to to IN cord-001824-7c37elh6 148 30 the the DT cord-001824-7c37elh6 148 31 test test NN cord-001824-7c37elh6 148 32 codon codon NN cord-001824-7c37elh6 148 33 ) ) -RRB- cord-001824-7c37elh6 148 34 . . . cord-001824-7c37elh6 149 1 Although although IN cord-001824-7c37elh6 149 2 the the DT cord-001824-7c37elh6 149 3 luciferase luciferase NN cord-001824-7c37elh6 149 4 system system NN cord-001824-7c37elh6 149 5 used use VBN cord-001824-7c37elh6 149 6 by by IN cord-001824-7c37elh6 149 7 us -PRON- PRP cord-001824-7c37elh6 149 8 is be VBZ cord-001824-7c37elh6 149 9 unable unable JJ cord-001824-7c37elh6 149 10 to to TO cord-001824-7c37elh6 149 11 distinguish distinguish VB cord-001824-7c37elh6 149 12 between between IN cord-001824-7c37elh6 149 13 an an DT cord-001824-7c37elh6 149 14 A a NN cord-001824-7c37elh6 149 15 - - : cord-001824-7c37elh6 149 16 or or CC cord-001824-7c37elh6 149 17 a a DT cord-001824-7c37elh6 149 18 P p NN cord-001824-7c37elh6 149 19 - - HYPH cord-001824-7c37elh6 149 20 site site NN cord-001824-7c37elh6 149 21 effect effect NN cord-001824-7c37elh6 149 22 caused cause VBN cord-001824-7c37elh6 149 23 by by IN cord-001824-7c37elh6 149 24 modification modification NN cord-001824-7c37elh6 149 25 deficiency deficiency NN cord-001824-7c37elh6 149 26 , , , cord-001824-7c37elh6 149 27 it -PRON- PRP cord-001824-7c37elh6 149 28 is be VBZ cord-001824-7c37elh6 149 29 still still RB cord-001824-7c37elh6 149 30 a a DT cord-001824-7c37elh6 149 31 valuable valuable JJ cord-001824-7c37elh6 149 32 method method NN cord-001824-7c37elh6 149 33 to to TO cord-001824-7c37elh6 149 34 address address VB cord-001824-7c37elh6 149 35 whether whether IN cord-001824-7c37elh6 149 36 or or CC cord-001824-7c37elh6 149 37 not not RB cord-001824-7c37elh6 149 38 modification modification NN cord-001824-7c37elh6 149 39 is be VBZ cord-001824-7c37elh6 149 40 important important JJ cord-001824-7c37elh6 149 41 for for IN cord-001824-7c37elh6 149 42 maintaining maintain VBG cord-001824-7c37elh6 149 43 the the DT cord-001824-7c37elh6 149 44 reading reading NN cord-001824-7c37elh6 149 45 frame frame NN cord-001824-7c37elh6 149 46 . . . cord-001824-7c37elh6 150 1 To to TO cord-001824-7c37elh6 150 2 address address VB cord-001824-7c37elh6 150 3 specifically specifically RB cord-001824-7c37elh6 150 4 if if IN cord-001824-7c37elh6 150 5 modification modification NN cord-001824-7c37elh6 150 6 deficiency deficiency NN cord-001824-7c37elh6 150 7 induces induce VBZ cord-001824-7c37elh6 150 8 an an DT cord-001824-7c37elh6 150 9 A A NNP cord-001824-7c37elh6 150 10 - - : cord-001824-7c37elh6 150 11 or or CC cord-001824-7c37elh6 150 12 a a DT cord-001824-7c37elh6 150 13 P p NN cord-001824-7c37elh6 150 14 - - HYPH cord-001824-7c37elh6 150 15 site site NN cord-001824-7c37elh6 150 16 effect effect NN cord-001824-7c37elh6 150 17 , , , cord-001824-7c37elh6 150 18 we -PRON- PRP cord-001824-7c37elh6 150 19 used use VBD cord-001824-7c37elh6 150 20 the the DT cord-001824-7c37elh6 150 21 Ty1 ty1 CD cord-001824-7c37elh6 150 22 system system NN cord-001824-7c37elh6 150 23 , , , cord-001824-7c37elh6 150 24 which which WDT cord-001824-7c37elh6 150 25 is be VBZ cord-001824-7c37elh6 150 26 explained explain VBN cord-001824-7c37elh6 150 27 below below RB cord-001824-7c37elh6 150 28 . . . cord-001824-7c37elh6 151 1 In in IN cord-001824-7c37elh6 151 2 yeast yeast NN cord-001824-7c37elh6 151 3 , , , cord-001824-7c37elh6 151 4 there there EX cord-001824-7c37elh6 151 5 are be VBP cord-001824-7c37elh6 151 6 11 11 CD cord-001824-7c37elh6 151 7 tRNA tRNA NNP cord-001824-7c37elh6 151 8 species specie NNS cord-001824-7c37elh6 151 9 having have VBG cord-001824-7c37elh6 151 10 mcm mcm NNP cord-001824-7c37elh6 151 11 5 5 CD cord-001824-7c37elh6 151 12 s s NN cord-001824-7c37elh6 151 13 2 2 CD cord-001824-7c37elh6 151 14 U U NNP cord-001824-7c37elh6 151 15 34 34 CD cord-001824-7c37elh6 151 16 , , , cord-001824-7c37elh6 151 17 mcm mcm NNP cord-001824-7c37elh6 151 18 5 5 CD cord-001824-7c37elh6 151 19 U U NNP cord-001824-7c37elh6 151 20 34 34 CD cord-001824-7c37elh6 151 21 , , , cord-001824-7c37elh6 151 22 ncm ncm NNP cord-001824-7c37elh6 151 23 5 5 CD cord-001824-7c37elh6 151 24 U U NNP cord-001824-7c37elh6 151 25 34 34 CD cord-001824-7c37elh6 151 26 or or CC cord-001824-7c37elh6 151 27 ncm ncm NNP cord-001824-7c37elh6 151 28 5 5 CD cord-001824-7c37elh6 152 1 U U NNP cord-001824-7c37elh6 152 2 34 34 CD cord-001824-7c37elh6 152 3 m m NN cord-001824-7c37elh6 152 4 nucleosides nucleoside NNS cord-001824-7c37elh6 152 5 at at IN cord-001824-7c37elh6 152 6 wobble wobble NN cord-001824-7c37elh6 152 7 position position NN cord-001824-7c37elh6 152 8 ( ( -LRB- cord-001824-7c37elh6 152 9 Figures figure NNS cord-001824-7c37elh6 152 10 2 2 CD cord-001824-7c37elh6 152 11 and and CC cord-001824-7c37elh6 152 12 3 3 CD cord-001824-7c37elh6 152 13 ) ) -RRB- cord-001824-7c37elh6 152 14 . . . cord-001824-7c37elh6 153 1 The the DT cord-001824-7c37elh6 153 2 role role NN cord-001824-7c37elh6 153 3 of of IN cord-001824-7c37elh6 153 4 these these DT cord-001824-7c37elh6 153 5 modified modify VBN cord-001824-7c37elh6 153 6 uridines uridine NNS cord-001824-7c37elh6 153 7 was be VBD cord-001824-7c37elh6 153 8 analyzed analyze VBN cord-001824-7c37elh6 153 9 for for IN cord-001824-7c37elh6 153 10 ribosomal ribosomal JJ cord-001824-7c37elh6 153 11 +1 +1 NN cord-001824-7c37elh6 153 12 frameshifting frameshifte VBG cord-001824-7c37elh6 153 13 using use VBG cord-001824-7c37elh6 153 14 the the DT cord-001824-7c37elh6 153 15 Renilla Renilla NNP cord-001824-7c37elh6 153 16 / / SYM cord-001824-7c37elh6 153 17 Firefly Firefly NNP cord-001824-7c37elh6 153 18 luciferase luciferase NN cord-001824-7c37elh6 153 19 bicistronic bicistronic JJ cord-001824-7c37elh6 153 20 reporter reporter NN cord-001824-7c37elh6 153 21 system system NN cord-001824-7c37elh6 153 22 described describe VBN cord-001824-7c37elh6 153 23 in in IN cord-001824-7c37elh6 153 24 the the DT cord-001824-7c37elh6 153 25 previous previous JJ cord-001824-7c37elh6 153 26 section section NN cord-001824-7c37elh6 153 27 . . . cord-001824-7c37elh6 154 1 In in IN cord-001824-7c37elh6 154 2 an an DT cord-001824-7c37elh6 154 3 elp3 elp3 CD cord-001824-7c37elh6 154 4 mutant mutant NN cord-001824-7c37elh6 154 5 these these DT cord-001824-7c37elh6 154 6 tRNA tRNA NNP cord-001824-7c37elh6 154 7 species specie NNS cord-001824-7c37elh6 154 8 are be VBP cord-001824-7c37elh6 154 9 missing miss VBG cord-001824-7c37elh6 154 10 the the DT cord-001824-7c37elh6 154 11 ncm ncm NNP cord-001824-7c37elh6 154 12 5 5 CD cord-001824-7c37elh6 154 13 and and CC cord-001824-7c37elh6 154 14 mcm mcm NNP cord-001824-7c37elh6 154 15 5 5 CD cord-001824-7c37elh6 154 16 groups group NNS cord-001824-7c37elh6 154 17 at at IN cord-001824-7c37elh6 154 18 wobble wobble NN cord-001824-7c37elh6 154 19 position position NN cord-001824-7c37elh6 154 20 ( ( -LRB- cord-001824-7c37elh6 154 21 U U NNP cord-001824-7c37elh6 154 22 34 34 CD cord-001824-7c37elh6 154 23 ) ) -RRB- cord-001824-7c37elh6 154 24 ( ( -LRB- cord-001824-7c37elh6 154 25 26 26 CD cord-001824-7c37elh6 154 26 , , , cord-001824-7c37elh6 154 27 45 45 CD cord-001824-7c37elh6 154 28 ) ) -RRB- cord-001824-7c37elh6 154 29 . . . cord-001824-7c37elh6 155 1 The the DT cord-001824-7c37elh6 155 2 role role NN cord-001824-7c37elh6 155 3 of of IN cord-001824-7c37elh6 155 4 the the DT cord-001824-7c37elh6 155 5 ncm ncm NNP cord-001824-7c37elh6 155 6 5 5 CD cord-001824-7c37elh6 155 7 and and CC cord-001824-7c37elh6 155 8 mcm mcm NNP cord-001824-7c37elh6 155 9 5 5 CD cord-001824-7c37elh6 155 10 groups group NNS cord-001824-7c37elh6 155 11 present present JJ cord-001824-7c37elh6 155 12 in in IN cord-001824-7c37elh6 155 13 these these DT cord-001824-7c37elh6 155 14 tRNAs trna NNS cord-001824-7c37elh6 155 15 in in IN cord-001824-7c37elh6 155 16 reading read VBG cord-001824-7c37elh6 155 17 frame frame NN cord-001824-7c37elh6 155 18 maintenance maintenance NN cord-001824-7c37elh6 155 19 was be VBD cord-001824-7c37elh6 155 20 investigated investigate VBN cord-001824-7c37elh6 155 21 in in IN cord-001824-7c37elh6 155 22 a a DT cord-001824-7c37elh6 155 23 wild wild JJ cord-001824-7c37elh6 155 24 type type NN cord-001824-7c37elh6 155 25 and and CC cord-001824-7c37elh6 155 26 in in IN cord-001824-7c37elh6 155 27 an an DT cord-001824-7c37elh6 155 28 elp3 elp3 CD cord-001824-7c37elh6 155 29 mutant mutant JJ cord-001824-7c37elh6 155 30 strain strain NN cord-001824-7c37elh6 155 31 using use VBG cord-001824-7c37elh6 155 32 cognate cognate JJ cord-001824-7c37elh6 155 33 or or CC cord-001824-7c37elh6 155 34 near near IN cord-001824-7c37elh6 155 35 cognate cognate JJ cord-001824-7c37elh6 155 36 codons codon NNS cord-001824-7c37elh6 155 37 as as IN cord-001824-7c37elh6 155 38 test test NN cord-001824-7c37elh6 155 39 codons codon NNS cord-001824-7c37elh6 155 40 . . . cord-001824-7c37elh6 156 1 Lack lack NN cord-001824-7c37elh6 156 2 of of IN cord-001824-7c37elh6 156 3 the the DT cord-001824-7c37elh6 156 4 mcm mcm NNP cord-001824-7c37elh6 156 5 5 5 CD cord-001824-7c37elh6 156 6 side side NN cord-001824-7c37elh6 156 7 chain chain NN cord-001824-7c37elh6 156 8 in in IN cord-001824-7c37elh6 156 9 tRNA trna NN cord-001824-7c37elh6 156 10 Arg Arg NNP cord-001824-7c37elh6 156 11 mcm mcm NNP cord-001824-7c37elh6 156 12 5 5 CD cord-001824-7c37elh6 156 13 UCU UCU NNP cord-001824-7c37elh6 156 14 , , , cord-001824-7c37elh6 156 15 tRNA tRNA NNP cord-001824-7c37elh6 156 16 Gly Gly NNP cord-001824-7c37elh6 156 17 mcm mcm NNP cord-001824-7c37elh6 156 18 5 5 CD cord-001824-7c37elh6 156 19 UCC UCC NNP cord-001824-7c37elh6 156 20 , , , cord-001824-7c37elh6 156 21 tRNA tRNA NNP cord-001824-7c37elh6 156 22 Lys Lys NNP cord-001824-7c37elh6 156 23 mcm mcm NNP cord-001824-7c37elh6 156 24 5 5 CD cord-001824-7c37elh6 156 25 s s NN cord-001824-7c37elh6 156 26 2 2 CD cord-001824-7c37elh6 156 27 UUU UUU NNP cord-001824-7c37elh6 156 28 and and CC cord-001824-7c37elh6 156 29 tRNA tRNA NNP cord-001824-7c37elh6 157 1 Glu Glu NNP cord-001824-7c37elh6 157 2 mcm mcm NNP cord-001824-7c37elh6 158 1 5 5 LS cord-001824-7c37elh6 158 2 s s POS cord-001824-7c37elh6 158 3 2 2 CD cord-001824-7c37elh6 158 4 UUC UUC NNP cord-001824-7c37elh6 158 5 resulted result VBD cord-001824-7c37elh6 158 6 in in IN cord-001824-7c37elh6 158 7 significantly significantly RB cord-001824-7c37elh6 158 8 higher high JJR cord-001824-7c37elh6 158 9 levels level NNS cord-001824-7c37elh6 158 10 of of IN cord-001824-7c37elh6 158 11 +1 +1 NN cord-001824-7c37elh6 158 12 frameshifting frameshifte VBG cord-001824-7c37elh6 158 13 with with IN cord-001824-7c37elh6 158 14 either either CC cord-001824-7c37elh6 158 15 A a DT cord-001824-7c37elh6 158 16 - - HYPH cord-001824-7c37elh6 158 17 ending end VBG cord-001824-7c37elh6 158 18 cognate cognate NN cord-001824-7c37elh6 158 19 or or CC cord-001824-7c37elh6 158 20 G g NN cord-001824-7c37elh6 158 21 - - HYPH cord-001824-7c37elh6 158 22 ending end VBG cord-001824-7c37elh6 158 23 near near IN cord-001824-7c37elh6 158 24 cognate cognate JJ cord-001824-7c37elh6 158 25 codons codon NNS cord-001824-7c37elh6 158 26 ( ( -LRB- cord-001824-7c37elh6 158 27 Table Table NNP cord-001824-7c37elh6 158 28 2 2 CD cord-001824-7c37elh6 158 29 and and CC cord-001824-7c37elh6 158 30 Supplementary Supplementary NNP cord-001824-7c37elh6 158 31 Figure Figure NNP cord-001824-7c37elh6 158 32 S1 S1 NNP cord-001824-7c37elh6 158 33 ) ) -RRB- cord-001824-7c37elh6 158 34 . . . cord-001824-7c37elh6 159 1 However however RB cord-001824-7c37elh6 159 2 , , , cord-001824-7c37elh6 159 3 absence absence NN cord-001824-7c37elh6 159 4 of of IN cord-001824-7c37elh6 159 5 the the DT cord-001824-7c37elh6 159 6 mcm mcm NNP cord-001824-7c37elh6 159 7 5 5 CD cord-001824-7c37elh6 159 8 group group NN cord-001824-7c37elh6 159 9 in in IN cord-001824-7c37elh6 159 10 tRNA tRNA NNP cord-001824-7c37elh6 159 11 Gln Gln NNP cord-001824-7c37elh6 159 12 mcm mcm NNP cord-001824-7c37elh6 159 13 5 5 CD cord-001824-7c37elh6 159 14 s s NN cord-001824-7c37elh6 159 15 2 2 CD cord-001824-7c37elh6 159 16 UUG UUG NNP cord-001824-7c37elh6 159 17 did do VBD cord-001824-7c37elh6 159 18 not not RB cord-001824-7c37elh6 159 19 have have VB cord-001824-7c37elh6 159 20 any any DT cord-001824-7c37elh6 159 21 significant significant JJ cord-001824-7c37elh6 159 22 effect effect NN cord-001824-7c37elh6 159 23 on on IN cord-001824-7c37elh6 159 24 reading read VBG cord-001824-7c37elh6 159 25 frame frame NN cord-001824-7c37elh6 159 26 maintenance maintenance NN cord-001824-7c37elh6 159 27 for for IN cord-001824-7c37elh6 159 28 the the DT cord-001824-7c37elh6 159 29 Gln Gln NNP cord-001824-7c37elh6 159 30 codons codon NNS cord-001824-7c37elh6 159 31 CAA CAA NNP cord-001824-7c37elh6 159 32 or or CC cord-001824-7c37elh6 159 33 CAG CAG NNP cord-001824-7c37elh6 159 34 ( ( -LRB- cord-001824-7c37elh6 159 35 Table Table NNP cord-001824-7c37elh6 159 36 2 2 CD cord-001824-7c37elh6 159 37 ) ) -RRB- cord-001824-7c37elh6 159 38 . . . cord-001824-7c37elh6 160 1 Lack lack NN cord-001824-7c37elh6 160 2 of of IN cord-001824-7c37elh6 160 3 the the DT cord-001824-7c37elh6 160 4 ncm ncm NNP cord-001824-7c37elh6 160 5 5 5 CD cord-001824-7c37elh6 160 6 group group NN cord-001824-7c37elh6 160 7 of of IN cord-001824-7c37elh6 160 8 U U NNP cord-001824-7c37elh6 160 9 34 34 CD cord-001824-7c37elh6 160 10 in in IN cord-001824-7c37elh6 160 11 tRNA trna NN cord-001824-7c37elh6 160 12 Val Val NNP cord-001824-7c37elh6 160 13 ncm ncm NNP cord-001824-7c37elh6 160 14 5 5 CD cord-001824-7c37elh6 160 15 UAC UAC NNP cord-001824-7c37elh6 160 16 and and CC cord-001824-7c37elh6 160 17 tRNA trna NN cord-001824-7c37elh6 161 1 Ser Ser NNP cord-001824-7c37elh6 161 2 ncm ncm NNP cord-001824-7c37elh6 161 3 5 5 CD cord-001824-7c37elh6 161 4 UGA UGA NNP cord-001824-7c37elh6 161 5 resulted result VBD cord-001824-7c37elh6 161 6 in in IN cord-001824-7c37elh6 161 7 an an DT cord-001824-7c37elh6 161 8 increased increase VBN cord-001824-7c37elh6 161 9 level level NN cord-001824-7c37elh6 161 10 of of IN cord-001824-7c37elh6 161 11 +1 +1 NN cord-001824-7c37elh6 161 12 frameshifting frameshifte VBG cord-001824-7c37elh6 161 13 with with IN cord-001824-7c37elh6 161 14 near near JJ cord-001824-7c37elh6 161 15 cognate cognate JJ cord-001824-7c37elh6 161 16 Val val NN cord-001824-7c37elh6 161 17 codon codon NN cord-001824-7c37elh6 161 18 GUG GUG NNP cord-001824-7c37elh6 161 19 or or CC cord-001824-7c37elh6 161 20 cognate cognate JJ cord-001824-7c37elh6 161 21 Ser Ser NNP cord-001824-7c37elh6 161 22 codon codon NN cord-001824-7c37elh6 161 23 UCA UCA NNP cord-001824-7c37elh6 161 24 . . . cord-001824-7c37elh6 162 1 In in IN cord-001824-7c37elh6 162 2 contrast contrast NN cord-001824-7c37elh6 162 3 , , , cord-001824-7c37elh6 162 4 absence absence NN cord-001824-7c37elh6 162 5 of of IN cord-001824-7c37elh6 162 6 the the DT cord-001824-7c37elh6 162 7 ncm ncm NNP cord-001824-7c37elh6 162 8 5 5 CD cord-001824-7c37elh6 162 9 group group NN cord-001824-7c37elh6 162 10 of of IN cord-001824-7c37elh6 162 11 U U NNP cord-001824-7c37elh6 162 12 34 34 CD cord-001824-7c37elh6 162 13 in in IN cord-001824-7c37elh6 162 14 tRNA trna NN cord-001824-7c37elh6 162 15 Pro pro JJ cord-001824-7c37elh6 162 16 ncm ncm NNP cord-001824-7c37elh6 162 17 5 5 CD cord-001824-7c37elh6 162 18 UGG UGG NNP cord-001824-7c37elh6 162 19 resulted result VBD cord-001824-7c37elh6 162 20 in in IN cord-001824-7c37elh6 162 21 a a DT cord-001824-7c37elh6 162 22 decreased decreased JJ cord-001824-7c37elh6 162 23 level level NN cord-001824-7c37elh6 162 24 of of IN cord-001824-7c37elh6 162 25 +1 +1 NN cord-001824-7c37elh6 162 26 frameshifting frameshifte VBG cord-001824-7c37elh6 162 27 with with IN cord-001824-7c37elh6 162 28 near near JJ cord-001824-7c37elh6 162 29 cognate cognate JJ cord-001824-7c37elh6 162 30 Pro pro JJ cord-001824-7c37elh6 162 31 codon codon NN cord-001824-7c37elh6 162 32 CCG ccg NN cord-001824-7c37elh6 162 33 . . . cord-001824-7c37elh6 163 1 Lack lack NN cord-001824-7c37elh6 163 2 of of IN cord-001824-7c37elh6 163 3 the the DT cord-001824-7c37elh6 163 4 ncm ncm NNP cord-001824-7c37elh6 163 5 5 5 CD cord-001824-7c37elh6 163 6 group group NN cord-001824-7c37elh6 163 7 of of IN cord-001824-7c37elh6 163 8 U U NNP cord-001824-7c37elh6 163 9 34 34 CD cord-001824-7c37elh6 163 10 of of IN cord-001824-7c37elh6 163 11 the the DT cord-001824-7c37elh6 163 12 remaining remain VBG cord-001824-7c37elh6 163 13 tRNAs trna NNS cord-001824-7c37elh6 163 14 did do VBD cord-001824-7c37elh6 163 15 not not RB cord-001824-7c37elh6 163 16 cause cause VB cord-001824-7c37elh6 163 17 a a DT cord-001824-7c37elh6 163 18 significant significant JJ cord-001824-7c37elh6 163 19 difference difference NN cord-001824-7c37elh6 163 20 in in IN cord-001824-7c37elh6 163 21 levels level NNS cord-001824-7c37elh6 163 22 of of IN cord-001824-7c37elh6 163 23 +1 +1 NN cord-001824-7c37elh6 163 24 frameshifting frameshifting NN cord-001824-7c37elh6 163 25 ( ( -LRB- cord-001824-7c37elh6 163 26 Table table NN cord-001824-7c37elh6 163 27 2 2 CD cord-001824-7c37elh6 163 28 and and CC cord-001824-7c37elh6 163 29 Supplementary Supplementary NNP cord-001824-7c37elh6 163 30 Figure Figure NNP cord-001824-7c37elh6 163 31 S1 S1 NNP cord-001824-7c37elh6 163 32 ) ) -RRB- cord-001824-7c37elh6 163 33 . . . cord-001824-7c37elh6 164 1 We -PRON- PRP cord-001824-7c37elh6 164 2 conclude conclude VBP cord-001824-7c37elh6 164 3 that that IN cord-001824-7c37elh6 164 4 in in IN cord-001824-7c37elh6 164 5 the the DT cord-001824-7c37elh6 164 6 xm xm NNP cord-001824-7c37elh6 164 7 5 5 CD cord-001824-7c37elh6 164 8 U U NNP cord-001824-7c37elh6 164 9 and and CC cord-001824-7c37elh6 164 10 mcm mcm NNP cord-001824-7c37elh6 164 11 5 5 CD cord-001824-7c37elh6 164 12 s s NN cord-001824-7c37elh6 164 13 2 2 CD cord-001824-7c37elh6 164 14 U U NNP cord-001824-7c37elh6 164 15 tRNA tRNA NNP cord-001824-7c37elh6 164 16 isoacceptors isoacceptor NNS cord-001824-7c37elh6 164 17 , , , cord-001824-7c37elh6 164 18 the the DT cord-001824-7c37elh6 164 19 mcm mcm NNP cord-001824-7c37elh6 164 20 5 5 CD cord-001824-7c37elh6 164 21 group group NN cord-001824-7c37elh6 164 22 plays play VBZ cord-001824-7c37elh6 164 23 a a DT cord-001824-7c37elh6 164 24 more more RBR cord-001824-7c37elh6 164 25 vital vital JJ cord-001824-7c37elh6 164 26 role role NN cord-001824-7c37elh6 164 27 than than IN cord-001824-7c37elh6 164 28 the the DT cord-001824-7c37elh6 164 29 ncm ncm NNP cord-001824-7c37elh6 164 30 5 5 CD cord-001824-7c37elh6 164 31 group group NN cord-001824-7c37elh6 164 32 in in IN cord-001824-7c37elh6 164 33 reading read VBG cord-001824-7c37elh6 164 34 frame frame NN cord-001824-7c37elh6 164 35 maintenance maintenance NN cord-001824-7c37elh6 164 36 . . . cord-001824-7c37elh6 165 1 Codon Codon NNP cord-001824-7c37elh6 165 2 CCC CCC NNP cord-001824-7c37elh6 165 3 that that WDT cord-001824-7c37elh6 165 4 can can MD cord-001824-7c37elh6 165 5 be be VB cord-001824-7c37elh6 165 6 read read VBN cord-001824-7c37elh6 165 7 by by IN cord-001824-7c37elh6 165 8 ncm ncm NNP cord-001824-7c37elh6 165 9 5 5 CD cord-001824-7c37elh6 165 10 U U NNP cord-001824-7c37elh6 165 11 34 34 CD cord-001824-7c37elh6 165 12 containing contain VBG cord-001824-7c37elh6 165 13 tRNA trna NN cord-001824-7c37elh6 165 14 Pro pro JJ cord-001824-7c37elh6 165 15 ncm ncm NNP cord-001824-7c37elh6 165 16 5 5 CD cord-001824-7c37elh6 165 17 UGG UGG NNP cord-001824-7c37elh6 165 18 is be VBZ cord-001824-7c37elh6 165 19 used use VBN cord-001824-7c37elh6 165 20 as as IN cord-001824-7c37elh6 165 21 a a DT cord-001824-7c37elh6 165 22 slippery slippery JJ cord-001824-7c37elh6 165 23 codon codon NN cord-001824-7c37elh6 165 24 upstream upstream RB cord-001824-7c37elh6 165 25 next next RB cord-001824-7c37elh6 165 26 to to IN cord-001824-7c37elh6 165 27 Gln- Gln- NNP cord-001824-7c37elh6 165 28 , , , cord-001824-7c37elh6 165 29 Lys Lys NNP cord-001824-7c37elh6 165 30 , , , cord-001824-7c37elh6 165 31 Arg- Arg- NNP cord-001824-7c37elh6 165 32 , , , cord-001824-7c37elh6 165 33 Gly Gly NNP cord-001824-7c37elh6 165 34 - - : cord-001824-7c37elh6 165 35 and and CC cord-001824-7c37elh6 165 36 Thr Thr NNP cord-001824-7c37elh6 165 37 - - HYPH cord-001824-7c37elh6 165 38 test test NN cord-001824-7c37elh6 165 39 codons codon NNS cord-001824-7c37elh6 165 40 ( ( -LRB- cord-001824-7c37elh6 165 41 Table Table NNP cord-001824-7c37elh6 165 42 2 2 CD cord-001824-7c37elh6 165 43 and and CC cord-001824-7c37elh6 165 44 Supplementary Supplementary NNP cord-001824-7c37elh6 165 45 Figure Figure NNP cord-001824-7c37elh6 165 46 S1 S1 NNP cord-001824-7c37elh6 165 47 ) ) -RRB- cord-001824-7c37elh6 165 48 . . . cord-001824-7c37elh6 166 1 Thus thus RB cord-001824-7c37elh6 166 2 , , , cord-001824-7c37elh6 166 3 the the DT cord-001824-7c37elh6 166 4 ncm ncm NNP cord-001824-7c37elh6 166 5 5 5 CD cord-001824-7c37elh6 166 6 U U NNP cord-001824-7c37elh6 166 7 34 34 CD cord-001824-7c37elh6 166 8 present present NN cord-001824-7c37elh6 166 9 in in IN cord-001824-7c37elh6 166 10 the the DT cord-001824-7c37elh6 166 11 potential potential JJ cord-001824-7c37elh6 166 12 peptidyl peptidyl JJ cord-001824-7c37elh6 166 13 - - HYPH cord-001824-7c37elh6 166 14 Pro pro JJ cord-001824-7c37elh6 166 15 - - JJ cord-001824-7c37elh6 166 16 tRNA trna NN cord-001824-7c37elh6 166 17 might may MD cord-001824-7c37elh6 166 18 influence influence VB cord-001824-7c37elh6 166 19 the the DT cord-001824-7c37elh6 166 20 ribosomal ribosomal JJ cord-001824-7c37elh6 166 21 grip grip NN cord-001824-7c37elh6 166 22 in in IN cord-001824-7c37elh6 166 23 the the DT cord-001824-7c37elh6 166 24 P p NN cord-001824-7c37elh6 166 25 - - HYPH cord-001824-7c37elh6 166 26 site site NN cord-001824-7c37elh6 166 27 and and CC cord-001824-7c37elh6 166 28 thus thus RB cord-001824-7c37elh6 166 29 influence influence VB cord-001824-7c37elh6 166 30 the the DT cord-001824-7c37elh6 166 31 slippage slippage NN cord-001824-7c37elh6 166 32 . . . cord-001824-7c37elh6 167 1 To to TO cord-001824-7c37elh6 167 2 test test VB cord-001824-7c37elh6 167 3 directly directly RB cord-001824-7c37elh6 167 4 the the DT cord-001824-7c37elh6 167 5 influence influence NN cord-001824-7c37elh6 167 6 of of IN cord-001824-7c37elh6 167 7 the the DT cord-001824-7c37elh6 167 8 ncm ncm NNP cord-001824-7c37elh6 167 9 5 5 CD cord-001824-7c37elh6 167 10 group group NN cord-001824-7c37elh6 167 11 in in IN cord-001824-7c37elh6 167 12 Pro Pro NNP cord-001824-7c37elh6 167 13 - - JJ cord-001824-7c37elh6 167 14 tRNA trna JJ cord-001824-7c37elh6 167 15 in in IN cord-001824-7c37elh6 167 16 peptidyl peptidyl JJ cord-001824-7c37elh6 167 17 - - HYPH cord-001824-7c37elh6 167 18 Pro pro JJ cord-001824-7c37elh6 167 19 - - JJ cord-001824-7c37elh6 167 20 tRNA trna JJ cord-001824-7c37elh6 167 21 slippage slippage NN cord-001824-7c37elh6 167 22 , , , cord-001824-7c37elh6 167 23 we -PRON- PRP cord-001824-7c37elh6 167 24 used use VBD cord-001824-7c37elh6 167 25 a a DT cord-001824-7c37elh6 167 26 construct construct NN cord-001824-7c37elh6 167 27 -UUU -UUU -LRB- cord-001824-7c37elh6 167 28 - - : cord-001824-7c37elh6 167 29 CCC CCC NNP cord-001824-7c37elh6 167 30 - - HYPH cord-001824-7c37elh6 167 31 UAG UAG NNP cord-001824-7c37elh6 167 32 - - : cord-001824-7c37elh6 167 33 in in IN cord-001824-7c37elh6 167 34 the the DT cord-001824-7c37elh6 167 35 luciferase luciferase NN cord-001824-7c37elh6 167 36 system system NN cord-001824-7c37elh6 167 37 . . . cord-001824-7c37elh6 168 1 The the DT cord-001824-7c37elh6 168 2 stop stop NN cord-001824-7c37elh6 168 3 codon codon NN cord-001824-7c37elh6 168 4 UAG UAG NNP cord-001824-7c37elh6 168 5 is be VBZ cord-001824-7c37elh6 168 6 in in IN cord-001824-7c37elh6 168 7 the the DT cord-001824-7c37elh6 168 8 zero zero CD cord-001824-7c37elh6 168 9 frame frame NN cord-001824-7c37elh6 168 10 just just RB cord-001824-7c37elh6 168 11 after after IN cord-001824-7c37elh6 168 12 the the DT cord-001824-7c37elh6 168 13 Pro pro JJ cord-001824-7c37elh6 168 14 codon codon NN cord-001824-7c37elh6 168 15 CCC CCC NNP cord-001824-7c37elh6 168 16 . . . cord-001824-7c37elh6 169 1 Since since IN cord-001824-7c37elh6 169 2 eukaryotic eukaryotic JJ cord-001824-7c37elh6 169 3 release release NN cord-001824-7c37elh6 169 4 factor factor NN cord-001824-7c37elh6 169 5 1 1 CD cord-001824-7c37elh6 169 6 ( ( -LRB- cord-001824-7c37elh6 169 7 eRF1 eRF1 NNP cord-001824-7c37elh6 169 8 ) ) -RRB- cord-001824-7c37elh6 169 9 acts act VBZ cord-001824-7c37elh6 169 10 in in IN cord-001824-7c37elh6 169 11 the the DT cord-001824-7c37elh6 169 12 A A NNP cord-001824-7c37elh6 169 13 - - HYPH cord-001824-7c37elh6 169 14 site site NN cord-001824-7c37elh6 169 15 ( ( -LRB- cord-001824-7c37elh6 169 16 Reviewed review VBN cord-001824-7c37elh6 169 17 in in IN cord-001824-7c37elh6 169 18 Kisselev Kisselev NNP cord-001824-7c37elh6 169 19 and and CC cord-001824-7c37elh6 169 20 Buckingham Buckingham NNP cord-001824-7c37elh6 169 21 ( ( -LRB- cord-001824-7c37elh6 169 22 44 44 CD cord-001824-7c37elh6 169 23 ) ) -RRB- cord-001824-7c37elh6 169 24 ) ) -RRB- cord-001824-7c37elh6 170 1 a a DT cord-001824-7c37elh6 170 2 possible possible JJ cord-001824-7c37elh6 170 3 +1 +1 XX cord-001824-7c37elh6 170 4 frameshift frameshift NN cord-001824-7c37elh6 170 5 by by IN cord-001824-7c37elh6 170 6 Pro Pro NNP cord-001824-7c37elh6 170 7 - - JJ cord-001824-7c37elh6 170 8 tRNA trna JJ cord-001824-7c37elh6 171 1 lacking lacking NNP cord-001824-7c37elh6 171 2 ncm ncm NNP cord-001824-7c37elh6 171 3 5 5 CD cord-001824-7c37elh6 171 4 U U NNP cord-001824-7c37elh6 171 5 would would MD cord-001824-7c37elh6 171 6 occur occur VB cord-001824-7c37elh6 171 7 in in IN cord-001824-7c37elh6 171 8 the the DT cord-001824-7c37elh6 171 9 P p NN cord-001824-7c37elh6 171 10 - - HYPH cord-001824-7c37elh6 171 11 site site NN cord-001824-7c37elh6 171 12 . . . cord-001824-7c37elh6 172 1 However however RB cord-001824-7c37elh6 172 2 , , , cord-001824-7c37elh6 172 3 no no DT cord-001824-7c37elh6 172 4 significant significant JJ cord-001824-7c37elh6 172 5 +1 +1 HYPH cord-001824-7c37elh6 172 6 frameshifting frameshifte VBG cord-001824-7c37elh6 172 7 was be VBD cord-001824-7c37elh6 172 8 observed observe VBN cord-001824-7c37elh6 172 9 when when WRB cord-001824-7c37elh6 172 10 the the DT cord-001824-7c37elh6 172 11 CCC CCC NNP cord-001824-7c37elh6 172 12 codon codon NN cord-001824-7c37elh6 172 13 was be VBD cord-001824-7c37elh6 172 14 just just RB cord-001824-7c37elh6 172 15 upstream upstream RB cord-001824-7c37elh6 172 16 the the DT cord-001824-7c37elh6 172 17 stop stop NN cord-001824-7c37elh6 172 18 codon codon NN cord-001824-7c37elh6 172 19 and and CC cord-001824-7c37elh6 172 20 thus thus RB cord-001824-7c37elh6 172 21 in in IN cord-001824-7c37elh6 172 22 the the DT cord-001824-7c37elh6 172 23 P p NN cord-001824-7c37elh6 172 24 - - HYPH cord-001824-7c37elh6 172 25 site site NN cord-001824-7c37elh6 172 26 ( ( -LRB- cord-001824-7c37elh6 172 27 Table Table NNP cord-001824-7c37elh6 172 28 2 2 CD cord-001824-7c37elh6 172 29 and and CC cord-001824-7c37elh6 172 30 Supplementary Supplementary NNP cord-001824-7c37elh6 172 31 Figure Figure NNP cord-001824-7c37elh6 172 32 S1 S1 NNP cord-001824-7c37elh6 172 33 ) ) -RRB- cord-001824-7c37elh6 172 34 . . . cord-001824-7c37elh6 173 1 We -PRON- PRP cord-001824-7c37elh6 173 2 conclude conclude VBP cord-001824-7c37elh6 173 3 that that IN cord-001824-7c37elh6 173 4 the the DT cord-001824-7c37elh6 173 5 ncm ncm NNP cord-001824-7c37elh6 173 6 5 5 CD cord-001824-7c37elh6 173 7 group group NN cord-001824-7c37elh6 173 8 in in IN cord-001824-7c37elh6 173 9 Pro Pro NNP cord-001824-7c37elh6 173 10 - - NNP cord-001824-7c37elh6 173 11 tRNA trna NN cord-001824-7c37elh6 173 12 does do VBZ cord-001824-7c37elh6 173 13 not not RB cord-001824-7c37elh6 173 14 increase increase VB cord-001824-7c37elh6 173 15 peptidyl peptidyl NNP cord-001824-7c37elh6 173 16 - - HYPH cord-001824-7c37elh6 173 17 tRNA trna NN cord-001824-7c37elh6 173 18 slippage slippage NN cord-001824-7c37elh6 173 19 at at IN cord-001824-7c37elh6 173 20 the the DT cord-001824-7c37elh6 173 21 slippery slippery JJ cord-001824-7c37elh6 173 22 codon codon NN cord-001824-7c37elh6 173 23 CCC CCC NNP cord-001824-7c37elh6 173 24 . . . cord-001824-7c37elh6 174 1 The the DT cord-001824-7c37elh6 174 2 slippery slippery JJ cord-001824-7c37elh6 174 3 codon codon NN cord-001824-7c37elh6 174 4 GGG GGG NNP cord-001824-7c37elh6 174 5 is be VBZ cord-001824-7c37elh6 174 6 decoded decode VBN cord-001824-7c37elh6 174 7 by by IN cord-001824-7c37elh6 174 8 both both DT cord-001824-7c37elh6 174 9 C C NNP cord-001824-7c37elh6 174 10 34 34 CD cord-001824-7c37elh6 174 11 containing contain VBG cord-001824-7c37elh6 174 12 tRNA tRNA NNP cord-001824-7c37elh6 174 13 Gly Gly NNP cord-001824-7c37elh6 174 14 CCC CCC NNP cord-001824-7c37elh6 174 15 and and CC cord-001824-7c37elh6 174 16 mcm mcm NNP cord-001824-7c37elh6 174 17 5 5 CD cord-001824-7c37elh6 174 18 U U NNP cord-001824-7c37elh6 174 19 34 34 CD cord-001824-7c37elh6 174 20 containing contain VBG cord-001824-7c37elh6 174 21 tRNA tRNA NNP cord-001824-7c37elh6 174 22 Gly Gly NNP cord-001824-7c37elh6 174 23 mcm mcm NNP cord-001824-7c37elh6 174 24 5 5 CD cord-001824-7c37elh6 174 25 UCC UCC NNP cord-001824-7c37elh6 174 26 . . . cord-001824-7c37elh6 175 1 The the DT cord-001824-7c37elh6 175 2 structure structure NN cord-001824-7c37elh6 175 3 of of IN cord-001824-7c37elh6 175 4 the the DT cord-001824-7c37elh6 175 5 latter latter JJ cord-001824-7c37elh6 175 6 tRNA tRNA NNP cord-001824-7c37elh6 175 7 is be VBZ cord-001824-7c37elh6 175 8 affected affect VBN cord-001824-7c37elh6 175 9 by by IN cord-001824-7c37elh6 175 10 the the DT cord-001824-7c37elh6 175 11 elp3 elp3 NNP cord-001824-7c37elh6 175 12 mutation mutation NN cord-001824-7c37elh6 175 13 and and CC cord-001824-7c37elh6 175 14 this this DT cord-001824-7c37elh6 175 15 tRNA tRNA NNP cord-001824-7c37elh6 175 16 reads read VBZ cord-001824-7c37elh6 175 17 the the DT cord-001824-7c37elh6 175 18 GGG GGG NNP cord-001824-7c37elh6 175 19 codon codon NN cord-001824-7c37elh6 175 20 very very RB cord-001824-7c37elh6 175 21 inefficiently inefficiently RB cord-001824-7c37elh6 175 22 compared compare VBN cord-001824-7c37elh6 175 23 to to IN cord-001824-7c37elh6 175 24 the the DT cord-001824-7c37elh6 175 25 cognate cognate NN cord-001824-7c37elh6 175 26 tRNA trna NN cord-001824-7c37elh6 175 27 Gly Gly NNP cord-001824-7c37elh6 175 28 CCC CCC NNP cord-001824-7c37elh6 175 29 ( ( -LRB- cord-001824-7c37elh6 175 30 26 26 CD cord-001824-7c37elh6 175 31 ) ) -RRB- cord-001824-7c37elh6 175 32 . . . cord-001824-7c37elh6 176 1 Therefore therefore RB cord-001824-7c37elh6 176 2 , , , cord-001824-7c37elh6 176 3 in in IN cord-001824-7c37elh6 176 4 the the DT cord-001824-7c37elh6 176 5 elp3 elp3 NNP cord-001824-7c37elh6 176 6 mutant mutant NN cord-001824-7c37elh6 176 7 it -PRON- PRP cord-001824-7c37elh6 176 8 is be VBZ cord-001824-7c37elh6 176 9 not not RB cord-001824-7c37elh6 176 10 likely likely JJ cord-001824-7c37elh6 176 11 that that IN cord-001824-7c37elh6 176 12 tRNA tRNA NNP cord-001824-7c37elh6 176 13 Gly Gly NNP cord-001824-7c37elh6 176 14 mcm mcm NNP cord-001824-7c37elh6 176 15 5 5 CD cord-001824-7c37elh6 176 16 UCC UCC NNP cord-001824-7c37elh6 176 17 lack- lack- VBN cord-001824-7c37elh6 176 18 Table Table NNP cord-001824-7c37elh6 176 19 2 2 CD cord-001824-7c37elh6 176 20 . . . cord-001824-7c37elh6 177 1 Influence influence NN cord-001824-7c37elh6 177 2 of of IN cord-001824-7c37elh6 177 3 tRNA tRNA NNP cord-001824-7c37elh6 177 4 modifications modification NNS cord-001824-7c37elh6 177 5 mcm mcm NNP cord-001824-7c37elh6 177 6 5 5 CD cord-001824-7c37elh6 177 7 s s NN cord-001824-7c37elh6 177 8 2 2 CD cord-001824-7c37elh6 177 9 U U NNP cord-001824-7c37elh6 177 10 34 34 CD cord-001824-7c37elh6 177 11 , , , cord-001824-7c37elh6 177 12 mcm mcm NNP cord-001824-7c37elh6 177 13 5 5 CD cord-001824-7c37elh6 177 14 U U NNP cord-001824-7c37elh6 177 15 34 34 CD cord-001824-7c37elh6 177 16 , , , cord-001824-7c37elh6 178 1 ncm ncm NNP cord-001824-7c37elh6 178 2 5 5 CD cord-001824-7c37elh6 178 3 U U NNP cord-001824-7c37elh6 178 4 34 34 CD cord-001824-7c37elh6 178 5 and and CC cord-001824-7c37elh6 178 6 ncm ncm NNP cord-001824-7c37elh6 178 7 5 5 CD cord-001824-7c37elh6 178 8 U U NNP cord-001824-7c37elh6 178 9 34 34 CD cord-001824-7c37elh6 178 10 m m NN cord-001824-7c37elh6 178 11 on on IN cord-001824-7c37elh6 178 12 reading read VBG cord-001824-7c37elh6 178 13 frame frame NN cord-001824-7c37elh6 178 14 maintenance maintenance NN cord-001824-7c37elh6 178 15 based base VBN cord-001824-7c37elh6 178 16 on on IN cord-001824-7c37elh6 178 17 data datum NNS cord-001824-7c37elh6 178 18 using use VBG cord-001824-7c37elh6 178 19 the the DT cord-001824-7c37elh6 178 20 Renilla Renilla NNP cord-001824-7c37elh6 178 21 / / SYM cord-001824-7c37elh6 178 22 Firefly Firefly NNP cord-001824-7c37elh6 178 23 luciferase luciferase NN cord-001824-7c37elh6 178 24 bicistronic bicistronic JJ cord-001824-7c37elh6 178 25 reporter reporter NN cord-001824-7c37elh6 178 26 system system NN cord-001824-7c37elh6 179 1 a a DT cord-001824-7c37elh6 179 2 Bold bold JJ cord-001824-7c37elh6 179 3 indicate indicate VBP cord-001824-7c37elh6 179 4 significant significant JJ cord-001824-7c37elh6 179 5 difference difference NN cord-001824-7c37elh6 179 6 in in IN cord-001824-7c37elh6 179 7 frameshifting frameshifte VBG cord-001824-7c37elh6 179 8 levels level NNS cord-001824-7c37elh6 179 9 between between IN cord-001824-7c37elh6 179 10 indicated indicate VBN cord-001824-7c37elh6 179 11 mutant mutant JJ cord-001824-7c37elh6 179 12 and and CC cord-001824-7c37elh6 179 13 wild wild JJ cord-001824-7c37elh6 179 14 type type NN cord-001824-7c37elh6 179 15 as as IN cord-001824-7c37elh6 179 16 determined determine VBN cord-001824-7c37elh6 179 17 by by IN cord-001824-7c37elh6 179 18 two two CD cord-001824-7c37elh6 179 19 - - HYPH cord-001824-7c37elh6 179 20 tail tail NN cord-001824-7c37elh6 179 21 t t NN cord-001824-7c37elh6 179 22 - - HYPH cord-001824-7c37elh6 179 23 test test NN cord-001824-7c37elh6 179 24 . . . cord-001824-7c37elh6 180 1 ( ( -LRB- cord-001824-7c37elh6 180 2 * * NFP cord-001824-7c37elh6 180 3 ) ) -RRB- cord-001824-7c37elh6 180 4 indicates indicate VBZ cord-001824-7c37elh6 180 5 P p NN cord-001824-7c37elh6 180 6 < < XX cord-001824-7c37elh6 180 7 0.05 0.05 CD cord-001824-7c37elh6 180 8 and and CC cord-001824-7c37elh6 181 1 ( ( -LRB- cord-001824-7c37elh6 181 2 * * NFP cord-001824-7c37elh6 181 3 * * NFP cord-001824-7c37elh6 181 4 ) ) -RRB- cord-001824-7c37elh6 181 5 indicates indicate VBZ cord-001824-7c37elh6 181 6 P p NN cord-001824-7c37elh6 181 7 < < XX cord-001824-7c37elh6 181 8 0.01 0.01 CD cord-001824-7c37elh6 181 9 . . . cord-001824-7c37elh6 182 1 b b LS cord-001824-7c37elh6 182 2 tRNA trna NN cord-001824-7c37elh6 182 3 Tyr Tyr NNP cord-001824-7c37elh6 182 4 G G NNP cord-001824-7c37elh6 182 5 A A NNP cord-001824-7c37elh6 182 6 has have VBZ cord-001824-7c37elh6 182 7 an an DT cord-001824-7c37elh6 182 8 unmodified unmodified JJ cord-001824-7c37elh6 182 9 G g NN cord-001824-7c37elh6 182 10 nucleoside nucleoside NN cord-001824-7c37elh6 182 11 at at IN cord-001824-7c37elh6 182 12 wobble wobble NN cord-001824-7c37elh6 182 13 position position NN cord-001824-7c37elh6 182 14 and and CC cord-001824-7c37elh6 182 15 its -PRON- PRP$ cord-001824-7c37elh6 182 16 structure structure NN cord-001824-7c37elh6 182 17 is be VBZ cord-001824-7c37elh6 182 18 not not RB cord-001824-7c37elh6 182 19 affected affect VBN cord-001824-7c37elh6 182 20 by by IN cord-001824-7c37elh6 182 21 the the DT cord-001824-7c37elh6 182 22 elp3 elp3 NNP cord-001824-7c37elh6 182 23 , , , cord-001824-7c37elh6 182 24 trm9 trm9 NNP cord-001824-7c37elh6 182 25 or or CC cord-001824-7c37elh6 182 26 tuc1 tuc1 NN cord-001824-7c37elh6 182 27 mutations mutation NNS cord-001824-7c37elh6 182 28 , , , cord-001824-7c37elh6 182 29 thus thus RB cord-001824-7c37elh6 182 30 it -PRON- PRP cord-001824-7c37elh6 182 31 is be VBZ cord-001824-7c37elh6 182 32 used use VBN cord-001824-7c37elh6 182 33 as as IN cord-001824-7c37elh6 182 34 a a DT cord-001824-7c37elh6 182 35 negative negative JJ cord-001824-7c37elh6 182 36 control control NN cord-001824-7c37elh6 182 37 ( ( -LRB- cord-001824-7c37elh6 182 38 54 54 CD cord-001824-7c37elh6 182 39 ) ) -RRB- cord-001824-7c37elh6 182 40 . . . cord-001824-7c37elh6 183 1 c c NNP cord-001824-7c37elh6 184 1 In in IN cord-001824-7c37elh6 184 2 an an DT cord-001824-7c37elh6 184 3 elp3 elp3 CD cord-001824-7c37elh6 184 4 mutant mutant NN cord-001824-7c37elh6 184 5 , , , cord-001824-7c37elh6 184 6 levels level NNS cord-001824-7c37elh6 184 7 of of IN cord-001824-7c37elh6 184 8 s s NNP cord-001824-7c37elh6 184 9 2 2 CD cord-001824-7c37elh6 184 10 group group NN cord-001824-7c37elh6 184 11 is be VBZ cord-001824-7c37elh6 184 12 reduced reduce VBN cord-001824-7c37elh6 184 13 ( ( -LRB- cord-001824-7c37elh6 184 14 55 55 CD cord-001824-7c37elh6 184 15 ) ) -RRB- cord-001824-7c37elh6 184 16 ( ( -LRB- cord-001824-7c37elh6 184 17 56 56 CD cord-001824-7c37elh6 184 18 ) ) -RRB- cord-001824-7c37elh6 184 19 ( ( -LRB- cord-001824-7c37elh6 184 20 57 57 CD cord-001824-7c37elh6 184 21 ) ) -RRB- cord-001824-7c37elh6 184 22 . . . cord-001824-7c37elh6 185 1 d d NNP cord-001824-7c37elh6 185 2 In in IN cord-001824-7c37elh6 185 3 a a DT cord-001824-7c37elh6 185 4 trm9 trm9 NNP cord-001824-7c37elh6 185 5 mutant mutant NN cord-001824-7c37elh6 185 6 , , , cord-001824-7c37elh6 185 7 tRNA trna NN cord-001824-7c37elh6 185 8 Arg arg NN cord-001824-7c37elh6 185 9 mcm mcm NNP cord-001824-7c37elh6 185 10 5 5 CD cord-001824-7c37elh6 185 11 UCU UCU NNP cord-001824-7c37elh6 185 12 and and CC cord-001824-7c37elh6 185 13 tRNA tRNA NNP cord-001824-7c37elh6 185 14 Glu Glu NNP cord-001824-7c37elh6 185 15 mcm mcm NNP cord-001824-7c37elh6 185 16 5 5 CD cord-001824-7c37elh6 185 17 s s NNP cord-001824-7c37elh6 185 18 2 2 CD cord-001824-7c37elh6 185 19 UUC UUC NNP cord-001824-7c37elh6 185 20 contain contain VBP cord-001824-7c37elh6 185 21 a a DT cord-001824-7c37elh6 185 22 mixture mixture NN cord-001824-7c37elh6 185 23 of of IN cord-001824-7c37elh6 185 24 ncm ncm NNP cord-001824-7c37elh6 185 25 5 5 CD cord-001824-7c37elh6 185 26 U U NNP cord-001824-7c37elh6 185 27 / / SYM cord-001824-7c37elh6 185 28 cm cm NN cord-001824-7c37elh6 185 29 5 5 CD cord-001824-7c37elh6 185 30 U U NNP cord-001824-7c37elh6 185 31 and and CC cord-001824-7c37elh6 185 32 ncm ncm NNP cord-001824-7c37elh6 185 33 5 5 CD cord-001824-7c37elh6 185 34 s s POS cord-001824-7c37elh6 185 35 2 2 CD cord-001824-7c37elh6 185 36 U U NNP cord-001824-7c37elh6 185 37 / / SYM cord-001824-7c37elh6 185 38 cm cm XX cord-001824-7c37elh6 186 1 5 5 LS cord-001824-7c37elh6 187 1 s s NNP cord-001824-7c37elh6 188 1 2 2 LS cord-001824-7c37elh6 188 2 U U NNP cord-001824-7c37elh6 188 3 nucleosides nucleoside NNS cord-001824-7c37elh6 188 4 , , , cord-001824-7c37elh6 188 5 respectively respectively RB cord-001824-7c37elh6 188 6 ( ( -LRB- cord-001824-7c37elh6 188 7 53 53 CD cord-001824-7c37elh6 188 8 ) ) -RRB- cord-001824-7c37elh6 188 9 . . . cord-001824-7c37elh6 189 1 n.a n.a NNP cord-001824-7c37elh6 189 2 . . NNP cord-001824-7c37elh6 189 3 , , , cord-001824-7c37elh6 189 4 not not RB cord-001824-7c37elh6 189 5 applicable applicable JJ cord-001824-7c37elh6 189 6 . . . cord-001824-7c37elh6 190 1 ing e VBG cord-001824-7c37elh6 190 2 the the DT cord-001824-7c37elh6 190 3 mcm mcm NNP cord-001824-7c37elh6 190 4 5 5 CD cord-001824-7c37elh6 190 5 side side NN cord-001824-7c37elh6 190 6 chain chain NN cord-001824-7c37elh6 190 7 at at IN cord-001824-7c37elh6 190 8 U U NNP cord-001824-7c37elh6 190 9 34 34 CD cord-001824-7c37elh6 190 10 will will MD cord-001824-7c37elh6 190 11 out out RB cord-001824-7c37elh6 190 12 - - HYPH cord-001824-7c37elh6 190 13 compete compete VB cord-001824-7c37elh6 190 14 the the DT cord-001824-7c37elh6 190 15 efficiently efficiently RB cord-001824-7c37elh6 190 16 decoding decode VBG cord-001824-7c37elh6 190 17 cognate cognate JJ cord-001824-7c37elh6 190 18 tRNA trna NN cord-001824-7c37elh6 190 19 Gly Gly NNP cord-001824-7c37elh6 190 20 CCC CCC NNP cord-001824-7c37elh6 190 21 at at IN cord-001824-7c37elh6 190 22 GGG GGG NNP cord-001824-7c37elh6 190 23 codons codon NNS cord-001824-7c37elh6 190 24 . . . cord-001824-7c37elh6 191 1 Consequently consequently RB cord-001824-7c37elh6 191 2 , , , cord-001824-7c37elh6 191 3 the the DT cord-001824-7c37elh6 191 4 observed observed JJ cord-001824-7c37elh6 191 5 +1 +1 XX cord-001824-7c37elh6 191 6 frameshifting frameshifte VBG cord-001824-7c37elh6 191 7 for for IN cord-001824-7c37elh6 191 8 tRNA tRNA NNP cord-001824-7c37elh6 191 9 Glu Glu NNP cord-001824-7c37elh6 191 10 mcm mcm NNP cord-001824-7c37elh6 191 11 5 5 CD cord-001824-7c37elh6 191 12 s s NNP cord-001824-7c37elh6 191 13 2 2 CD cord-001824-7c37elh6 191 14 UUC UUC NNP cord-001824-7c37elh6 191 15 and and CC cord-001824-7c37elh6 191 16 tRNA tRNA NNP cord-001824-7c37elh6 191 17 Val Val NNP cord-001824-7c37elh6 191 18 ncm ncm NNP cord-001824-7c37elh6 192 1 5 5 CD cord-001824-7c37elh6 192 2 UAC UAC NNP cord-001824-7c37elh6 192 3 ( ( -LRB- cord-001824-7c37elh6 192 4 Table table NN cord-001824-7c37elh6 192 5 2 2 CD cord-001824-7c37elh6 192 6 ) ) -RRB- cord-001824-7c37elh6 192 7 is be VBZ cord-001824-7c37elh6 192 8 most most RBS cord-001824-7c37elh6 192 9 likely likely JJ cord-001824-7c37elh6 192 10 not not RB cord-001824-7c37elh6 192 11 caused cause VBN cord-001824-7c37elh6 192 12 by by IN cord-001824-7c37elh6 192 13 slippage slippage NN cord-001824-7c37elh6 192 14 of of IN cord-001824-7c37elh6 192 15 an an DT cord-001824-7c37elh6 192 16 unmodified unmodified JJ cord-001824-7c37elh6 192 17 peptidyl peptidyl NNP cord-001824-7c37elh6 192 18 - - HYPH cord-001824-7c37elh6 192 19 tRNA trna NN cord-001824-7c37elh6 192 20 Gly Gly NNP cord-001824-7c37elh6 192 21 mcm mcm NNP cord-001824-7c37elh6 192 22 5 5 CD cord-001824-7c37elh6 192 23 UCC UCC NNP cord-001824-7c37elh6 192 24 but but CC cord-001824-7c37elh6 192 25 rather rather RB cord-001824-7c37elh6 192 26 a a DT cord-001824-7c37elh6 192 27 poor poor JJ cord-001824-7c37elh6 192 28 A a NN cord-001824-7c37elh6 192 29 - - HYPH cord-001824-7c37elh6 192 30 site site NN cord-001824-7c37elh6 192 31 entry entry NN cord-001824-7c37elh6 192 32 by by IN cord-001824-7c37elh6 192 33 tRNA tRNA NNP cord-001824-7c37elh6 192 34 Glu Glu NNP cord-001824-7c37elh6 192 35 mcm mcm NNP cord-001824-7c37elh6 192 36 5 5 CD cord-001824-7c37elh6 192 37 s s NNP cord-001824-7c37elh6 192 38 2 2 CD cord-001824-7c37elh6 192 39 UUC UUC NNP cord-001824-7c37elh6 192 40 and and CC cord-001824-7c37elh6 192 41 tRNA tRNA NNP cord-001824-7c37elh6 192 42 Val Val NNP cord-001824-7c37elh6 192 43 ncm ncm NNP cord-001824-7c37elh6 192 44 5 5 CD cord-001824-7c37elh6 192 45 UAC UAC NNP cord-001824-7c37elh6 192 46 , , , cord-001824-7c37elh6 192 47 respectively respectively RB cord-001824-7c37elh6 192 48 . . . cord-001824-7c37elh6 193 1 The the DT cord-001824-7c37elh6 193 2 formation formation NN cord-001824-7c37elh6 193 3 of of IN cord-001824-7c37elh6 193 4 the the DT cord-001824-7c37elh6 193 5 esterified esterify VBN cord-001824-7c37elh6 193 6 methyl methyl NN cord-001824-7c37elh6 193 7 group group NN cord-001824-7c37elh6 193 8 of of IN cord-001824-7c37elh6 193 9 mcm mcm NNP cord-001824-7c37elh6 193 10 5 5 CD cord-001824-7c37elh6 193 11 U U NNP cord-001824-7c37elh6 193 12 , , , cord-001824-7c37elh6 193 13 which which WDT cord-001824-7c37elh6 193 14 is be VBZ cord-001824-7c37elh6 193 15 the the DT cord-001824-7c37elh6 193 16 last last JJ cord-001824-7c37elh6 193 17 step step NN cord-001824-7c37elh6 193 18 in in IN cord-001824-7c37elh6 193 19 the the DT cord-001824-7c37elh6 193 20 synthesis synthesis NN cord-001824-7c37elh6 193 21 of of IN cord-001824-7c37elh6 193 22 the the DT cord-001824-7c37elh6 193 23 mcm mcm NNP cord-001824-7c37elh6 193 24 5 5 CD cord-001824-7c37elh6 193 25 side side NN cord-001824-7c37elh6 193 26 chain chain NN cord-001824-7c37elh6 193 27 , , , cord-001824-7c37elh6 193 28 is be VBZ cord-001824-7c37elh6 193 29 catalyzed catalyze VBN cord-001824-7c37elh6 193 30 by by IN cord-001824-7c37elh6 193 31 the the DT cord-001824-7c37elh6 193 32 dimeric dimeric JJ cord-001824-7c37elh6 193 33 Trm9 Trm9 NNP cord-001824-7c37elh6 193 34 / / SYM cord-001824-7c37elh6 193 35 Trm112 Trm112 NNP cord-001824-7c37elh6 193 36 protein protein NN cord-001824-7c37elh6 193 37 complex complex NN cord-001824-7c37elh6 193 38 ( ( -LRB- cord-001824-7c37elh6 193 39 46 46 CD cord-001824-7c37elh6 193 40 , , , cord-001824-7c37elh6 193 41 47 47 CD cord-001824-7c37elh6 193 42 ) ) -RRB- cord-001824-7c37elh6 193 43 . . . cord-001824-7c37elh6 194 1 The the DT cord-001824-7c37elh6 194 2 influence influence NN cord-001824-7c37elh6 194 3 of of IN cord-001824-7c37elh6 194 4 the the DT cord-001824-7c37elh6 194 5 esterified esterify VBN cord-001824-7c37elh6 194 6 methyl methyl NN cord-001824-7c37elh6 194 7 group group NN cord-001824-7c37elh6 194 8 of of IN cord-001824-7c37elh6 194 9 the the DT cord-001824-7c37elh6 194 10 mcm mcm NNP cord-001824-7c37elh6 194 11 5 5 CD cord-001824-7c37elh6 194 12 U U NNP cord-001824-7c37elh6 194 13 34 34 CD cord-001824-7c37elh6 194 14 and and CC cord-001824-7c37elh6 194 15 mcm mcm NNP cord-001824-7c37elh6 194 16 5 5 CD cord-001824-7c37elh6 194 17 s s NN cord-001824-7c37elh6 194 18 2 2 CD cord-001824-7c37elh6 194 19 U U NNP cord-001824-7c37elh6 194 20 34 34 CD cord-001824-7c37elh6 194 21 nucleoside nucleoside NN cord-001824-7c37elh6 194 22 in in IN cord-001824-7c37elh6 194 23 reading read VBG cord-001824-7c37elh6 194 24 frame frame NN cord-001824-7c37elh6 194 25 maintenance maintenance NN cord-001824-7c37elh6 194 26 was be VBD cord-001824-7c37elh6 194 27 investigated investigate VBN cord-001824-7c37elh6 194 28 in in IN cord-001824-7c37elh6 194 29 a a DT cord-001824-7c37elh6 194 30 wild wild JJ cord-001824-7c37elh6 194 31 type type NN cord-001824-7c37elh6 194 32 and and CC cord-001824-7c37elh6 194 33 in in IN cord-001824-7c37elh6 194 34 a a DT cord-001824-7c37elh6 194 35 trm9 trm9 NNP cord-001824-7c37elh6 194 36 mutant mutant JJ cord-001824-7c37elh6 194 37 strain strain NN cord-001824-7c37elh6 194 38 using use VBG cord-001824-7c37elh6 194 39 cognate cognate JJ cord-001824-7c37elh6 194 40 or or CC cord-001824-7c37elh6 194 41 near near IN cord-001824-7c37elh6 194 42 cognate cognate JJ cord-001824-7c37elh6 194 43 codons codon NNS cord-001824-7c37elh6 194 44 as as IN cord-001824-7c37elh6 194 45 test test NN cord-001824-7c37elh6 194 46 codons codon NNS cord-001824-7c37elh6 194 47 ( ( -LRB- cord-001824-7c37elh6 194 48 Table table NN cord-001824-7c37elh6 194 49 2 2 CD cord-001824-7c37elh6 194 50 ) ) -RRB- cord-001824-7c37elh6 194 51 . . . cord-001824-7c37elh6 195 1 Lack lack NN cord-001824-7c37elh6 195 2 of of IN cord-001824-7c37elh6 195 3 the the DT cord-001824-7c37elh6 195 4 esterified esterify VBN cord-001824-7c37elh6 195 5 methyl methyl NN cord-001824-7c37elh6 195 6 group group NN cord-001824-7c37elh6 195 7 of of IN cord-001824-7c37elh6 195 8 the the DT cord-001824-7c37elh6 195 9 mcm mcm NNP cord-001824-7c37elh6 195 10 5 5 CD cord-001824-7c37elh6 195 11 side side NN cord-001824-7c37elh6 195 12 chain chain NN cord-001824-7c37elh6 195 13 of of IN cord-001824-7c37elh6 195 14 U U NNP cord-001824-7c37elh6 195 15 34 34 CD cord-001824-7c37elh6 195 16 in in IN cord-001824-7c37elh6 195 17 tRNA tRNA NNP cord-001824-7c37elh6 195 18 Gln Gln NNP cord-001824-7c37elh6 195 19 mcm mcm NNP cord-001824-7c37elh6 195 20 5 5 CD cord-001824-7c37elh6 195 21 s s NN cord-001824-7c37elh6 195 22 2 2 CD cord-001824-7c37elh6 195 23 UUG UUG NNP cord-001824-7c37elh6 195 24 resulted result VBD cord-001824-7c37elh6 195 25 in in IN cord-001824-7c37elh6 195 26 significantly significantly RB cord-001824-7c37elh6 195 27 decreased decrease VBN cord-001824-7c37elh6 195 28 +1 +1 NNS cord-001824-7c37elh6 195 29 frameshifting frameshifte VBG cord-001824-7c37elh6 195 30 at at IN cord-001824-7c37elh6 195 31 the the DT cord-001824-7c37elh6 195 32 Gln Gln NNP cord-001824-7c37elh6 195 33 codon codon NN cord-001824-7c37elh6 195 34 CAA caa NN cord-001824-7c37elh6 195 35 ( ( -LRB- cord-001824-7c37elh6 195 36 Table Table NNP cord-001824-7c37elh6 195 37 2 2 CD cord-001824-7c37elh6 195 38 and and CC cord-001824-7c37elh6 195 39 Supplementary Supplementary NNP cord-001824-7c37elh6 195 40 Figure Figure NNP cord-001824-7c37elh6 195 41 S1 S1 NNP cord-001824-7c37elh6 195 42 ) ) -RRB- cord-001824-7c37elh6 195 43 . . . cord-001824-7c37elh6 196 1 There there EX cord-001824-7c37elh6 196 2 were be VBD cord-001824-7c37elh6 196 3 no no DT cord-001824-7c37elh6 196 4 significant significant JJ cord-001824-7c37elh6 196 5 differences difference NNS cord-001824-7c37elh6 196 6 in in IN cord-001824-7c37elh6 196 7 the the DT cord-001824-7c37elh6 196 8 levels level NNS cord-001824-7c37elh6 196 9 of of IN cord-001824-7c37elh6 196 10 frameshifting frameshifte VBG cord-001824-7c37elh6 196 11 between between IN cord-001824-7c37elh6 196 12 wild wild JJ cord-001824-7c37elh6 196 13 type type NN cord-001824-7c37elh6 196 14 and and CC cord-001824-7c37elh6 196 15 trm9 trm9 NN cord-001824-7c37elh6 196 16 mutant mutant NN cord-001824-7c37elh6 196 17 in in IN cord-001824-7c37elh6 196 18 the the DT cord-001824-7c37elh6 196 19 remaining remain VBG cord-001824-7c37elh6 196 20 test test NN cord-001824-7c37elh6 196 21 constructs construct NNS cord-001824-7c37elh6 196 22 ( ( -LRB- cord-001824-7c37elh6 196 23 Table table NN cord-001824-7c37elh6 196 24 2 2 CD cord-001824-7c37elh6 196 25 and and CC cord-001824-7c37elh6 196 26 Supplementary Supplementary NNP cord-001824-7c37elh6 196 27 Figure Figure NNP cord-001824-7c37elh6 196 28 S1 S1 NNP cord-001824-7c37elh6 196 29 ) ) -RRB- cord-001824-7c37elh6 196 30 . . . cord-001824-7c37elh6 197 1 We -PRON- PRP cord-001824-7c37elh6 197 2 conclude conclude VBP cord-001824-7c37elh6 197 3 that that IN cord-001824-7c37elh6 197 4 presence presence NN cord-001824-7c37elh6 197 5 or or CC cord-001824-7c37elh6 197 6 absence absence NN cord-001824-7c37elh6 197 7 of of IN cord-001824-7c37elh6 197 8 the the DT cord-001824-7c37elh6 197 9 esterified esterify VBN cord-001824-7c37elh6 197 10 methyl methyl NN cord-001824-7c37elh6 197 11 group group NN cord-001824-7c37elh6 197 12 in in IN cord-001824-7c37elh6 197 13 the the DT cord-001824-7c37elh6 197 14 mcm mcm NNP cord-001824-7c37elh6 197 15 5 5 CD cord-001824-7c37elh6 197 16 side side NN cord-001824-7c37elh6 197 17 chain chain NN cord-001824-7c37elh6 197 18 only only RB cord-001824-7c37elh6 197 19 seem seem VBP cord-001824-7c37elh6 197 20 to to TO cord-001824-7c37elh6 197 21 play play VB cord-001824-7c37elh6 197 22 a a DT cord-001824-7c37elh6 197 23 minor minor JJ cord-001824-7c37elh6 197 24 role role NN cord-001824-7c37elh6 197 25 in in IN cord-001824-7c37elh6 197 26 +1 +1 NN cord-001824-7c37elh6 197 27 frameshifting frameshifting NN cord-001824-7c37elh6 197 28 . . . cord-001824-7c37elh6 198 1 In in IN cord-001824-7c37elh6 198 2 a a DT cord-001824-7c37elh6 198 3 tuc1 tuc1 NN cord-001824-7c37elh6 198 4 mutant mutant NN cord-001824-7c37elh6 198 5 , , , cord-001824-7c37elh6 198 6 the the DT cord-001824-7c37elh6 198 7 s s NNP cord-001824-7c37elh6 198 8 2 2 CD cord-001824-7c37elh6 198 9 group group NN cord-001824-7c37elh6 198 10 of of IN cord-001824-7c37elh6 198 11 mcm mcm NNP cord-001824-7c37elh6 198 12 5 5 CD cord-001824-7c37elh6 198 13 s s NNP cord-001824-7c37elh6 199 1 2 2 LS cord-001824-7c37elh6 199 2 U u NN cord-001824-7c37elh6 199 3 at at IN cord-001824-7c37elh6 199 4 the the DT cord-001824-7c37elh6 199 5 wobble wobble NN cord-001824-7c37elh6 199 6 position position NN cord-001824-7c37elh6 199 7 ( ( -LRB- cord-001824-7c37elh6 199 8 U U NNP cord-001824-7c37elh6 199 9 34 34 CD cord-001824-7c37elh6 199 10 ) ) -RRB- cord-001824-7c37elh6 199 11 is be VBZ cord-001824-7c37elh6 199 12 absent absent JJ cord-001824-7c37elh6 199 13 in in IN cord-001824-7c37elh6 199 14 tRNA tRNA NNP cord-001824-7c37elh6 199 15 Gln Gln NNP cord-001824-7c37elh6 199 16 mcm mcm NNP cord-001824-7c37elh6 199 17 5 5 CD cord-001824-7c37elh6 199 18 s s NN cord-001824-7c37elh6 199 19 2 2 CD cord-001824-7c37elh6 199 20 UUG UUG NNP cord-001824-7c37elh6 199 21 , , , cord-001824-7c37elh6 199 22 tRNA tRNA NNP cord-001824-7c37elh6 199 23 Lys Lys NNP cord-001824-7c37elh6 199 24 mcm mcm NNP cord-001824-7c37elh6 199 25 5 5 CD cord-001824-7c37elh6 199 26 s s NN cord-001824-7c37elh6 199 27 2 2 CD cord-001824-7c37elh6 199 28 UUU UUU NNP cord-001824-7c37elh6 199 29 and and CC cord-001824-7c37elh6 199 30 tRNA tRNA NNP cord-001824-7c37elh6 200 1 Glu Glu NNP cord-001824-7c37elh6 200 2 mcm mcm NNP cord-001824-7c37elh6 200 3 5 5 CD cord-001824-7c37elh6 201 1 s s NNP cord-001824-7c37elh6 201 2 2 2 CD cord-001824-7c37elh6 201 3 UUC UUC NNP cord-001824-7c37elh6 201 4 ( ( -LRB- cord-001824-7c37elh6 201 5 48 48 CD cord-001824-7c37elh6 201 6 ) ) -RRB- cord-001824-7c37elh6 201 7 . . . cord-001824-7c37elh6 202 1 The the DT cord-001824-7c37elh6 202 2 role role NN cord-001824-7c37elh6 202 3 of of IN cord-001824-7c37elh6 202 4 the the DT cord-001824-7c37elh6 202 5 s s NNP cord-001824-7c37elh6 202 6 2 2 CD cord-001824-7c37elh6 202 7 group group NN cord-001824-7c37elh6 202 8 present present NN cord-001824-7c37elh6 202 9 in in IN cord-001824-7c37elh6 202 10 these these DT cord-001824-7c37elh6 202 11 tRNAs trna NNS cord-001824-7c37elh6 202 12 in in IN cord-001824-7c37elh6 202 13 reading read VBG cord-001824-7c37elh6 202 14 frame frame NN cord-001824-7c37elh6 202 15 maintenance maintenance NN cord-001824-7c37elh6 202 16 was be VBD cord-001824-7c37elh6 202 17 investigated investigate VBN cord-001824-7c37elh6 202 18 in in IN cord-001824-7c37elh6 202 19 a a DT cord-001824-7c37elh6 202 20 wild wild JJ cord-001824-7c37elh6 202 21 type type NN cord-001824-7c37elh6 202 22 and and CC cord-001824-7c37elh6 202 23 a a DT cord-001824-7c37elh6 202 24 tuc1 tuc1 NN cord-001824-7c37elh6 202 25 mutant mutant JJ cord-001824-7c37elh6 202 26 strain strain NN cord-001824-7c37elh6 202 27 using use VBG cord-001824-7c37elh6 202 28 cognate cognate JJ cord-001824-7c37elh6 202 29 or or CC cord-001824-7c37elh6 202 30 near near IN cord-001824-7c37elh6 202 31 cognate cognate JJ cord-001824-7c37elh6 202 32 codons codon NNS cord-001824-7c37elh6 202 33 as as IN cord-001824-7c37elh6 202 34 test test NN cord-001824-7c37elh6 202 35 codons codon NNS cord-001824-7c37elh6 202 36 ( ( -LRB- cord-001824-7c37elh6 202 37 Table table NN cord-001824-7c37elh6 202 38 2 2 CD cord-001824-7c37elh6 202 39 ) ) -RRB- cord-001824-7c37elh6 202 40 . . . cord-001824-7c37elh6 203 1 Absence absence NN cord-001824-7c37elh6 203 2 of of IN cord-001824-7c37elh6 203 3 the the DT cord-001824-7c37elh6 203 4 s s NNP cord-001824-7c37elh6 203 5 2 2 CD cord-001824-7c37elh6 203 6 group group NN cord-001824-7c37elh6 203 7 in in IN cord-001824-7c37elh6 203 8 tRNA tRNA NNP cord-001824-7c37elh6 203 9 Lys Lys NNP cord-001824-7c37elh6 203 10 mcm mcm NNP cord-001824-7c37elh6 203 11 5 5 CD cord-001824-7c37elh6 203 12 s s NN cord-001824-7c37elh6 203 13 2 2 CD cord-001824-7c37elh6 203 14 UUU UUU NNP cord-001824-7c37elh6 203 15 and and CC cord-001824-7c37elh6 203 16 tRNA tRNA NNP cord-001824-7c37elh6 203 17 Glu Glu NNP cord-001824-7c37elh6 203 18 mcm mcm NNP cord-001824-7c37elh6 204 1 5 5 LS cord-001824-7c37elh6 204 2 s s POS cord-001824-7c37elh6 204 3 2 2 CD cord-001824-7c37elh6 204 4 UUC UUC NNP cord-001824-7c37elh6 204 5 resulted result VBD cord-001824-7c37elh6 204 6 in in IN cord-001824-7c37elh6 204 7 significantly significantly RB cord-001824-7c37elh6 204 8 higher high JJR cord-001824-7c37elh6 204 9 levels level NNS cord-001824-7c37elh6 204 10 of of IN cord-001824-7c37elh6 204 11 +1 +1 NN cord-001824-7c37elh6 204 12 frameshifting frameshifte VBG cord-001824-7c37elh6 204 13 with with IN cord-001824-7c37elh6 204 14 either either CC cord-001824-7c37elh6 204 15 A a DT cord-001824-7c37elh6 204 16 - - HYPH cord-001824-7c37elh6 204 17 ending end VBG cord-001824-7c37elh6 204 18 cognate cognate NN cord-001824-7c37elh6 204 19 or or CC cord-001824-7c37elh6 204 20 G g NN cord-001824-7c37elh6 204 21 - - HYPH cord-001824-7c37elh6 204 22 ending end VBG cord-001824-7c37elh6 204 23 near near IN cord-001824-7c37elh6 204 24 cognate cognate JJ cord-001824-7c37elh6 204 25 codons codon NNS cord-001824-7c37elh6 204 26 ( ( -LRB- cord-001824-7c37elh6 204 27 Table Table NNP cord-001824-7c37elh6 204 28 2 2 CD cord-001824-7c37elh6 204 29 and and CC cord-001824-7c37elh6 204 30 Supplementary Supplementary NNP cord-001824-7c37elh6 204 31 Figure Figure NNP cord-001824-7c37elh6 204 32 S1 S1 NNP cord-001824-7c37elh6 204 33 ) ) -RRB- cord-001824-7c37elh6 204 34 . . . cord-001824-7c37elh6 205 1 However however RB cord-001824-7c37elh6 205 2 , , , cord-001824-7c37elh6 205 3 lack lack NN cord-001824-7c37elh6 205 4 of of IN cord-001824-7c37elh6 205 5 the the DT cord-001824-7c37elh6 205 6 s s NNP cord-001824-7c37elh6 205 7 2 2 CD cord-001824-7c37elh6 205 8 group group NN cord-001824-7c37elh6 205 9 in in IN cord-001824-7c37elh6 205 10 tRNA tRNA NNP cord-001824-7c37elh6 205 11 Gln Gln NNP cord-001824-7c37elh6 205 12 mcm mcm NNP cord-001824-7c37elh6 205 13 5 5 CD cord-001824-7c37elh6 205 14 s s NN cord-001824-7c37elh6 205 15 2 2 CD cord-001824-7c37elh6 205 16 UUG UUG NNP cord-001824-7c37elh6 205 17 resulted result VBD cord-001824-7c37elh6 205 18 in in IN cord-001824-7c37elh6 205 19 significantly significantly RB cord-001824-7c37elh6 205 20 decreased decrease VBN cord-001824-7c37elh6 205 21 +1 +1 NNS cord-001824-7c37elh6 205 22 frameshifting frameshifte VBG cord-001824-7c37elh6 205 23 with with IN cord-001824-7c37elh6 205 24 the the DT cord-001824-7c37elh6 205 25 near near JJ cord-001824-7c37elh6 205 26 cognate cognate JJ cord-001824-7c37elh6 205 27 CAG CAG NNP cord-001824-7c37elh6 205 28 ( ( -LRB- cord-001824-7c37elh6 205 29 Table Table NNP cord-001824-7c37elh6 205 30 2 2 CD cord-001824-7c37elh6 205 31 and and CC cord-001824-7c37elh6 205 32 Supplementary Supplementary NNP cord-001824-7c37elh6 205 33 Figure Figure NNP cord-001824-7c37elh6 205 34 S1 S1 NNP cord-001824-7c37elh6 205 35 ) ) -RRB- cord-001824-7c37elh6 205 36 . . . cord-001824-7c37elh6 206 1 In in IN cord-001824-7c37elh6 206 2 the the DT cord-001824-7c37elh6 206 3 cases case NNS cord-001824-7c37elh6 206 4 stated state VBN cord-001824-7c37elh6 206 5 above above RB cord-001824-7c37elh6 206 6 , , , cord-001824-7c37elh6 206 7 Gln Gln NNP cord-001824-7c37elh6 206 8 - - HYPH cord-001824-7c37elh6 206 9 and and CC cord-001824-7c37elh6 206 10 Pro Pro NNP cord-001824-7c37elh6 206 11 - - NNS cord-001824-7c37elh6 206 12 tRNAs tRNAs NNP cord-001824-7c37elh6 206 13 showed show VBD cord-001824-7c37elh6 206 14 reduced reduced JJ cord-001824-7c37elh6 206 15 levels level NNS cord-001824-7c37elh6 206 16 of of IN cord-001824-7c37elh6 206 17 +1 +1 NN cord-001824-7c37elh6 206 18 frameshifting frameshifte VBG cord-001824-7c37elh6 206 19 due due IN cord-001824-7c37elh6 206 20 to to IN cord-001824-7c37elh6 206 21 lack lack NN cord-001824-7c37elh6 206 22 of of IN cord-001824-7c37elh6 206 23 esterified esterify VBN cord-001824-7c37elh6 206 24 methyl methyl NN cord-001824-7c37elh6 206 25 , , , cord-001824-7c37elh6 206 26 s s NNP cord-001824-7c37elh6 206 27 2 2 CD cord-001824-7c37elh6 206 28 or or CC cord-001824-7c37elh6 206 29 ncm ncm NNP cord-001824-7c37elh6 206 30 5 5 CD cord-001824-7c37elh6 206 31 groups group NNS cord-001824-7c37elh6 206 32 ( ( -LRB- cord-001824-7c37elh6 206 33 Table Table NNP cord-001824-7c37elh6 206 34 2 2 CD cord-001824-7c37elh6 206 35 ) ) -RRB- cord-001824-7c37elh6 206 36 . . . cord-001824-7c37elh6 207 1 This this DT cord-001824-7c37elh6 207 2 reduced reduce VBN cord-001824-7c37elh6 207 3 level level NN cord-001824-7c37elh6 207 4 of of IN cord-001824-7c37elh6 207 5 frameshifting frameshifting NN cord-001824-7c37elh6 207 6 might may MD cord-001824-7c37elh6 207 7 be be VB cord-001824-7c37elh6 207 8 surprising surprising JJ cord-001824-7c37elh6 207 9 but but CC cord-001824-7c37elh6 207 10 similar similar JJ cord-001824-7c37elh6 207 11 observations observation NNS cord-001824-7c37elh6 207 12 were be VBD cord-001824-7c37elh6 207 13 noted note VBN cord-001824-7c37elh6 207 14 earlier early RBR cord-001824-7c37elh6 207 15 . . . cord-001824-7c37elh6 208 1 In in IN cord-001824-7c37elh6 208 2 bacteria bacteria NNS cord-001824-7c37elh6 208 3 the the DT cord-001824-7c37elh6 208 4 Gln- Gln- NNPS cord-001824-7c37elh6 208 5 , , , cord-001824-7c37elh6 208 6 Lys Lys NNP cord-001824-7c37elh6 208 7 - - : cord-001824-7c37elh6 208 8 and and CC cord-001824-7c37elh6 208 9 Glu Glu NNP cord-001824-7c37elh6 208 10 - - HYPH cord-001824-7c37elh6 208 11 tRNA tRNA NNP cord-001824-7c37elh6 208 12 contain contain VBP cord-001824-7c37elh6 208 13 as as IN cord-001824-7c37elh6 208 14 wobble wobble NN cord-001824-7c37elh6 209 1 nucleoside nucleoside RB cord-001824-7c37elh6 210 1 the the DT cord-001824-7c37elh6 210 2 mnm mnm NNP cord-001824-7c37elh6 210 3 5 5 NNP cord-001824-7c37elh6 210 4 s s NNP cord-001824-7c37elh6 210 5 2 2 CD cord-001824-7c37elh6 210 6 U U NNP cord-001824-7c37elh6 210 7 , , , cord-001824-7c37elh6 210 8 which which WDT cord-001824-7c37elh6 210 9 is be VBZ cord-001824-7c37elh6 210 10 structurally structurally RB cord-001824-7c37elh6 210 11 related relate VBN cord-001824-7c37elh6 210 12 to to IN cord-001824-7c37elh6 210 13 the the DT cord-001824-7c37elh6 210 14 mcm mcm NNP cord-001824-7c37elh6 210 15 5 5 CD cord-001824-7c37elh6 210 16 s s NN cord-001824-7c37elh6 210 17 2 2 CD cord-001824-7c37elh6 210 18 U U NNP cord-001824-7c37elh6 210 19 present present JJ cord-001824-7c37elh6 210 20 in in IN cord-001824-7c37elh6 210 21 the the DT cord-001824-7c37elh6 210 22 corresponding correspond VBG cord-001824-7c37elh6 210 23 yeast yeast NN cord-001824-7c37elh6 210 24 tRNAs trna NNS cord-001824-7c37elh6 210 25 . . . cord-001824-7c37elh6 211 1 Lack lack NN cord-001824-7c37elh6 211 2 of of IN cord-001824-7c37elh6 211 3 either either CC cord-001824-7c37elh6 211 4 the the DT cord-001824-7c37elh6 211 5 mnm mnm NNP cord-001824-7c37elh6 211 6 5 5 CD cord-001824-7c37elh6 211 7 side side NN cord-001824-7c37elh6 211 8 chain chain NN cord-001824-7c37elh6 211 9 or or CC cord-001824-7c37elh6 211 10 the the DT cord-001824-7c37elh6 211 11 sulphur sulphur NN cord-001824-7c37elh6 211 12 at at IN cord-001824-7c37elh6 211 13 position position NN cord-001824-7c37elh6 211 14 2 2 CD cord-001824-7c37elh6 211 15 reduced reduce VBN cord-001824-7c37elh6 211 16 frameshifting frameshifte VBG cord-001824-7c37elh6 211 17 similarly similarly RB cord-001824-7c37elh6 211 18 as as IN cord-001824-7c37elh6 211 19 noted note VBN cord-001824-7c37elh6 211 20 by by IN cord-001824-7c37elh6 211 21 us -PRON- PRP cord-001824-7c37elh6 211 22 for for IN cord-001824-7c37elh6 211 23 the the DT cord-001824-7c37elh6 211 24 two two CD cord-001824-7c37elh6 211 25 aforementioned aforementioned JJ cord-001824-7c37elh6 211 26 cases case NNS cord-001824-7c37elh6 211 27 ( ( -LRB- cord-001824-7c37elh6 211 28 15 15 CD cord-001824-7c37elh6 211 29 , , , cord-001824-7c37elh6 211 30 16 16 CD cord-001824-7c37elh6 211 31 ) ) -RRB- cord-001824-7c37elh6 211 32 . . . cord-001824-7c37elh6 212 1 Although although IN cord-001824-7c37elh6 212 2 these these DT cord-001824-7c37elh6 212 3 results result NNS cord-001824-7c37elh6 212 4 seems seem VBZ cord-001824-7c37elh6 212 5 counterintuitively counterintuitively RB cord-001824-7c37elh6 212 6 strange strange JJ cord-001824-7c37elh6 212 7 , , , cord-001824-7c37elh6 212 8 one one PRP cord-001824-7c37elh6 212 9 has have VBZ cord-001824-7c37elh6 212 10 to to TO cord-001824-7c37elh6 212 11 remember remember VB cord-001824-7c37elh6 212 12 that that IN cord-001824-7c37elh6 212 13 the the DT cord-001824-7c37elh6 212 14 structure structure NN cord-001824-7c37elh6 212 15 of of IN cord-001824-7c37elh6 212 16 the the DT cord-001824-7c37elh6 212 17 different different JJ cord-001824-7c37elh6 212 18 tRNA tRNA NNP cord-001824-7c37elh6 212 19 species specie NNS cord-001824-7c37elh6 212 20 is be VBZ cord-001824-7c37elh6 212 21 optimized optimize VBN cord-001824-7c37elh6 212 22 and and CC cord-001824-7c37elh6 212 23 in in IN cord-001824-7c37elh6 212 24 fact fact NN cord-001824-7c37elh6 212 25 has have VBZ cord-001824-7c37elh6 212 26 evolved evolve VBN cord-001824-7c37elh6 212 27 to to TO cord-001824-7c37elh6 212 28 have have VB cord-001824-7c37elh6 212 29 similar similar JJ cord-001824-7c37elh6 212 30 decoding decoding NN cord-001824-7c37elh6 212 31 activity activity NN cord-001824-7c37elh6 212 32 , , , cord-001824-7c37elh6 212 33 which which WDT cord-001824-7c37elh6 212 34 is be VBZ cord-001824-7c37elh6 212 35 obtained obtain VBN cord-001824-7c37elh6 212 36 partly partly RB cord-001824-7c37elh6 212 37 due due JJ cord-001824-7c37elh6 212 38 to to IN cord-001824-7c37elh6 212 39 modification modification NN cord-001824-7c37elh6 212 40 of of IN cord-001824-7c37elh6 212 41 it -PRON- PRP cord-001824-7c37elh6 212 42 ( ( -LRB- cord-001824-7c37elh6 212 43 49 49 CD cord-001824-7c37elh6 212 44 ) ) -RRB- cord-001824-7c37elh6 212 45 . . . cord-001824-7c37elh6 213 1 Therefore therefore RB cord-001824-7c37elh6 213 2 , , , cord-001824-7c37elh6 213 3 a a DT cord-001824-7c37elh6 213 4 modification modification NN cord-001824-7c37elh6 213 5 may may MD cord-001824-7c37elh6 213 6 improve improve VB cord-001824-7c37elh6 213 7 the the DT cord-001824-7c37elh6 213 8 activity activity NN cord-001824-7c37elh6 213 9 of of IN cord-001824-7c37elh6 213 10 one one CD cord-001824-7c37elh6 213 11 tRNA trna NN cord-001824-7c37elh6 213 12 whereas whereas IN cord-001824-7c37elh6 213 13 it -PRON- PRP cord-001824-7c37elh6 213 14 might may MD cord-001824-7c37elh6 213 15 reduce reduce VB cord-001824-7c37elh6 213 16 the the DT cord-001824-7c37elh6 213 17 activity activity NN cord-001824-7c37elh6 213 18 of of IN cord-001824-7c37elh6 213 19 another another DT cord-001824-7c37elh6 213 20 tRNA tRNA NNP cord-001824-7c37elh6 213 21 species specie NNS cord-001824-7c37elh6 213 22 ( ( -LRB- cord-001824-7c37elh6 214 1 See see VB cord-001824-7c37elh6 214 2 discussion discussion NN cord-001824-7c37elh6 214 3 of of IN cord-001824-7c37elh6 214 4 this this DT cord-001824-7c37elh6 214 5 issue issue NN cord-001824-7c37elh6 214 6 in in IN cord-001824-7c37elh6 214 7 Björk Björk NNP cord-001824-7c37elh6 214 8 and and CC cord-001824-7c37elh6 214 9 Hagervall Hagervall NNP cord-001824-7c37elh6 214 10 ( ( -LRB- cord-001824-7c37elh6 214 11 4 4 CD cord-001824-7c37elh6 214 12 ) ) -RRB- cord-001824-7c37elh6 214 13 ) ) -RRB- cord-001824-7c37elh6 214 14 . . . cord-001824-7c37elh6 215 1 From from IN cord-001824-7c37elh6 215 2 such such JJ cord-001824-7c37elh6 215 3 considerations consideration NNS cord-001824-7c37elh6 215 4 , , , cord-001824-7c37elh6 215 5 one one PRP cord-001824-7c37elh6 215 6 would would MD cord-001824-7c37elh6 215 7 expect expect VB cord-001824-7c37elh6 215 8 that that IN cord-001824-7c37elh6 215 9 when when WRB cord-001824-7c37elh6 215 10 measuring measure VBG cord-001824-7c37elh6 215 11 a a DT cord-001824-7c37elh6 215 12 specific specific JJ cord-001824-7c37elh6 215 13 activity activity NN cord-001824-7c37elh6 215 14 of of IN cord-001824-7c37elh6 215 15 a a DT cord-001824-7c37elh6 215 16 tRNA trna NN cord-001824-7c37elh6 215 17 , , , cord-001824-7c37elh6 215 18 like like IN cord-001824-7c37elh6 215 19 influencing influence VBG cord-001824-7c37elh6 215 20 reading reading NN cord-001824-7c37elh6 215 21 frame frame NN cord-001824-7c37elh6 215 22 maintenance maintenance NN cord-001824-7c37elh6 215 23 , , , cord-001824-7c37elh6 215 24 a a DT cord-001824-7c37elh6 215 25 modification modification NN cord-001824-7c37elh6 215 26 might may MD cord-001824-7c37elh6 215 27 improve improve VB cord-001824-7c37elh6 215 28 or or CC cord-001824-7c37elh6 215 29 reduce reduce VB cord-001824-7c37elh6 215 30 the the DT cord-001824-7c37elh6 215 31 fidelity fidelity NN cord-001824-7c37elh6 215 32 of of IN cord-001824-7c37elh6 215 33 it -PRON- PRP cord-001824-7c37elh6 215 34 . . . cord-001824-7c37elh6 216 1 A a DT cord-001824-7c37elh6 216 2 key key JJ cord-001824-7c37elh6 216 3 feature feature NN cord-001824-7c37elh6 216 4 of of IN cord-001824-7c37elh6 216 5 the the DT cord-001824-7c37elh6 216 6 peptidyl peptidyl NNP cord-001824-7c37elh6 216 7 - - HYPH cord-001824-7c37elh6 216 8 tRNA trna NN cord-001824-7c37elh6 216 9 slippage slippage NN cord-001824-7c37elh6 216 10 model model NN cord-001824-7c37elh6 216 11 is be VBZ cord-001824-7c37elh6 216 12 that that IN cord-001824-7c37elh6 216 13 the the DT cord-001824-7c37elh6 216 14 error error NN cord-001824-7c37elh6 216 15 in in IN cord-001824-7c37elh6 216 16 reading read VBG cord-001824-7c37elh6 216 17 frame frame NN cord-001824-7c37elh6 216 18 maintenance maintenance NN cord-001824-7c37elh6 216 19 , , , cord-001824-7c37elh6 216 20 induced induce VBN cord-001824-7c37elh6 216 21 either either CC cord-001824-7c37elh6 216 22 by by IN cord-001824-7c37elh6 216 23 an an DT cord-001824-7c37elh6 216 24 A A NNP cord-001824-7c37elh6 216 25 - - : cord-001824-7c37elh6 216 26 or or CC cord-001824-7c37elh6 216 27 a a DT cord-001824-7c37elh6 216 28 P p NN cord-001824-7c37elh6 216 29 - - HYPH cord-001824-7c37elh6 216 30 site site NN cord-001824-7c37elh6 216 31 effect effect NN cord-001824-7c37elh6 216 32 due due IN cord-001824-7c37elh6 216 33 to to IN cord-001824-7c37elh6 216 34 modification modification NN cord-001824-7c37elh6 216 35 deficient deficient JJ cord-001824-7c37elh6 216 36 tRNA trna NN cord-001824-7c37elh6 216 37 , , , cord-001824-7c37elh6 216 38 occurs occur VBZ cord-001824-7c37elh6 216 39 in in IN cord-001824-7c37elh6 216 40 the the DT cord-001824-7c37elh6 216 41 P p NN cord-001824-7c37elh6 216 42 - - HYPH cord-001824-7c37elh6 216 43 site site NN cord-001824-7c37elh6 216 44 by by IN cord-001824-7c37elh6 216 45 peptidyl peptidyl NNP cord-001824-7c37elh6 216 46 - - HYPH cord-001824-7c37elh6 216 47 tRNA trna NN cord-001824-7c37elh6 216 48 slippage slippage NN cord-001824-7c37elh6 216 49 . . . cord-001824-7c37elh6 217 1 There there EX cord-001824-7c37elh6 217 2 are be VBP cord-001824-7c37elh6 217 3 two two CD cord-001824-7c37elh6 217 4 ways way NNS cord-001824-7c37elh6 217 5 to to TO cord-001824-7c37elh6 217 6 establish establish VB cord-001824-7c37elh6 217 7 if if IN cord-001824-7c37elh6 217 8 the the DT cord-001824-7c37elh6 217 9 frameshift frameshift NN cord-001824-7c37elh6 217 10 errors error NNS cord-001824-7c37elh6 217 11 occur occur VBP cord-001824-7c37elh6 217 12 in in IN cord-001824-7c37elh6 217 13 the the DT cord-001824-7c37elh6 217 14 ribosomal ribosomal JJ cord-001824-7c37elh6 217 15 A a NN cord-001824-7c37elh6 217 16 - - : cord-001824-7c37elh6 217 17 or or CC cord-001824-7c37elh6 217 18 P p NN cord-001824-7c37elh6 217 19 - - HYPH cord-001824-7c37elh6 217 20 site site NN cord-001824-7c37elh6 217 21 . . . cord-001824-7c37elh6 218 1 Either either CC cord-001824-7c37elh6 218 2 one one NN cord-001824-7c37elh6 218 3 determines determine VBZ cord-001824-7c37elh6 218 4 the the DT cord-001824-7c37elh6 218 5 amino amino NN cord-001824-7c37elh6 218 6 acid acid NN cord-001824-7c37elh6 218 7 sequence sequence NN cord-001824-7c37elh6 218 8 of of IN cord-001824-7c37elh6 218 9 the the DT cord-001824-7c37elh6 218 10 frameshift frameshift NN cord-001824-7c37elh6 218 11 peptide peptide NN cord-001824-7c37elh6 218 12 covering cover VBG cord-001824-7c37elh6 218 13 the the DT cord-001824-7c37elh6 218 14 frameshift frameshift NN cord-001824-7c37elh6 218 15 window window NN cord-001824-7c37elh6 218 16 or or CC cord-001824-7c37elh6 218 17 by by IN cord-001824-7c37elh6 218 18 overexpressing overexpresse VBG cord-001824-7c37elh6 218 19 the the DT cord-001824-7c37elh6 218 20 tRNA tRNA NNP cord-001824-7c37elh6 218 21 cognate cognate JJ cord-001824-7c37elh6 218 22 to to IN cord-001824-7c37elh6 218 23 the the DT cord-001824-7c37elh6 218 24 Asite Asite NNP cord-001824-7c37elh6 218 25 codon codon NN cord-001824-7c37elh6 218 26 . . . cord-001824-7c37elh6 219 1 In in IN cord-001824-7c37elh6 219 2 the the DT cord-001824-7c37elh6 219 3 latter latter JJ cord-001824-7c37elh6 219 4 case case NN cord-001824-7c37elh6 219 5 , , , cord-001824-7c37elh6 219 6 if if IN cord-001824-7c37elh6 219 7 the the DT cord-001824-7c37elh6 219 8 frameshift frameshift NN cord-001824-7c37elh6 219 9 error error NN cord-001824-7c37elh6 219 10 occurs occur VBZ cord-001824-7c37elh6 219 11 due due IN cord-001824-7c37elh6 219 12 to to IN cord-001824-7c37elh6 219 13 an an DT cord-001824-7c37elh6 219 14 A a NN cord-001824-7c37elh6 219 15 - - HYPH cord-001824-7c37elh6 219 16 site site NN cord-001824-7c37elh6 219 17 effect effect NN cord-001824-7c37elh6 219 18 , , , cord-001824-7c37elh6 219 19 such such JJ cord-001824-7c37elh6 219 20 overexpression overexpression NN cord-001824-7c37elh6 219 21 would would MD cord-001824-7c37elh6 219 22 decrease decrease VB cord-001824-7c37elh6 219 23 the the DT cord-001824-7c37elh6 219 24 frameshift frameshift NN cord-001824-7c37elh6 219 25 error error NN cord-001824-7c37elh6 219 26 , , , cord-001824-7c37elh6 219 27 since since IN cord-001824-7c37elh6 219 28 it -PRON- PRP cord-001824-7c37elh6 219 29 reduces reduce VBZ cord-001824-7c37elh6 219 30 the the DT cord-001824-7c37elh6 219 31 ribosomal ribosomal NN cord-001824-7c37elh6 219 32 pause pause NN cord-001824-7c37elh6 219 33 and and CC cord-001824-7c37elh6 219 34 thereby thereby RB cord-001824-7c37elh6 219 35 reduces reduce VBZ cord-001824-7c37elh6 219 36 the the DT cord-001824-7c37elh6 219 37 ability ability NN cord-001824-7c37elh6 219 38 of of IN cord-001824-7c37elh6 219 39 the the DT cord-001824-7c37elh6 219 40 peptidyl peptidyl NNP cord-001824-7c37elh6 219 41 - - HYPH cord-001824-7c37elh6 219 42 tRNA tRNA NNP cord-001824-7c37elh6 219 43 to to TO cord-001824-7c37elh6 219 44 slip slip VB cord-001824-7c37elh6 219 45 forward forward RB cord-001824-7c37elh6 219 46 . . . cord-001824-7c37elh6 220 1 We -PRON- PRP cord-001824-7c37elh6 220 2 chose choose VBD cord-001824-7c37elh6 220 3 the the DT cord-001824-7c37elh6 220 4 latter latter JJ cord-001824-7c37elh6 220 5 method method NN cord-001824-7c37elh6 220 6 , , , cord-001824-7c37elh6 220 7 since since IN cord-001824-7c37elh6 220 8 this this DT cord-001824-7c37elh6 220 9 approach approach NN cord-001824-7c37elh6 220 10 is be VBZ cord-001824-7c37elh6 220 11 relevant relevant JJ cord-001824-7c37elh6 220 12 for for IN cord-001824-7c37elh6 220 13 this this DT cord-001824-7c37elh6 220 14 study study NN cord-001824-7c37elh6 220 15 , , , cord-001824-7c37elh6 220 16 as as IN cord-001824-7c37elh6 220 17 such such PDT cord-001824-7c37elh6 220 18 a a DT cord-001824-7c37elh6 220 19 treatment treatment NN cord-001824-7c37elh6 220 20 also also RB cord-001824-7c37elh6 220 21 suppresses suppress VBZ cord-001824-7c37elh6 220 22 all all PDT cord-001824-7c37elh6 220 23 the the DT cord-001824-7c37elh6 220 24 pleiotropic pleiotropic JJ cord-001824-7c37elh6 220 25 phenotypes phenotype NNS cord-001824-7c37elh6 220 26 induced induce VBN cord-001824-7c37elh6 220 27 by by IN cord-001824-7c37elh6 220 28 a a DT cord-001824-7c37elh6 220 29 mutation mutation NN cord-001824-7c37elh6 220 30 in in IN cord-001824-7c37elh6 220 31 , , , cord-001824-7c37elh6 220 32 e.g. e.g. IN cord-001824-7c37elh6 220 33 the the DT cord-001824-7c37elh6 220 34 ELP3 ELP3 NNP cord-001824-7c37elh6 220 35 gene gene NN cord-001824-7c37elh6 220 36 . . . cord-001824-7c37elh6 221 1 Thus thus RB cord-001824-7c37elh6 221 2 , , , cord-001824-7c37elh6 221 3 the the DT cord-001824-7c37elh6 221 4 strong strong JJ cord-001824-7c37elh6 221 5 pleiotropic pleiotropic JJ cord-001824-7c37elh6 221 6 phenotypes phenotype NNS cord-001824-7c37elh6 221 7 ob ob NNP cord-001824-7c37elh6 221 8 - - : cord-001824-7c37elh6 221 9 served serve VBN cord-001824-7c37elh6 221 10 in in IN cord-001824-7c37elh6 221 11 an an DT cord-001824-7c37elh6 221 12 elp3 elp3 NNP cord-001824-7c37elh6 221 13 mutant mutant NN cord-001824-7c37elh6 221 14 might may MD cord-001824-7c37elh6 221 15 be be VB cord-001824-7c37elh6 221 16 due due JJ cord-001824-7c37elh6 221 17 , , , cord-001824-7c37elh6 221 18 at at IN cord-001824-7c37elh6 221 19 least least JJS cord-001824-7c37elh6 221 20 partly partly RB cord-001824-7c37elh6 221 21 , , , cord-001824-7c37elh6 221 22 to to IN cord-001824-7c37elh6 221 23 errors error NNS cord-001824-7c37elh6 221 24 in in IN cord-001824-7c37elh6 221 25 reading read VBG cord-001824-7c37elh6 221 26 frame frame NN cord-001824-7c37elh6 221 27 maintenance maintenance NN cord-001824-7c37elh6 221 28 of of IN cord-001824-7c37elh6 221 29 some some DT cord-001824-7c37elh6 221 30 key key NN cord-001824-7c37elh6 221 31 mRNAs mrna NNS cord-001824-7c37elh6 221 32 . . . cord-001824-7c37elh6 222 1 As as IN cord-001824-7c37elh6 222 2 stated state VBN cord-001824-7c37elh6 222 3 in in IN cord-001824-7c37elh6 222 4 the the DT cord-001824-7c37elh6 222 5 description description NN cord-001824-7c37elh6 222 6 of of IN cord-001824-7c37elh6 222 7 the the DT cord-001824-7c37elh6 222 8 assay assay NN cord-001824-7c37elh6 222 9 system system NN cord-001824-7c37elh6 222 10 , , , cord-001824-7c37elh6 222 11 the the DT cord-001824-7c37elh6 222 12 dual dual JJ cord-001824-7c37elh6 222 13 - - HYPH cord-001824-7c37elh6 222 14 luciferase luciferase NN cord-001824-7c37elh6 222 15 assay assay NN cord-001824-7c37elh6 222 16 system system NN cord-001824-7c37elh6 222 17 is be VBZ cord-001824-7c37elh6 222 18 not not RB cord-001824-7c37elh6 222 19 designed design VBN cord-001824-7c37elh6 222 20 to to TO cord-001824-7c37elh6 222 21 clarify clarify VB cord-001824-7c37elh6 222 22 the the DT cord-001824-7c37elh6 222 23 difference difference NN cord-001824-7c37elh6 222 24 between between IN cord-001824-7c37elh6 222 25 an an DT cord-001824-7c37elh6 222 26 A A NNP cord-001824-7c37elh6 222 27 - - : cord-001824-7c37elh6 222 28 or or CC cord-001824-7c37elh6 222 29 a a DT cord-001824-7c37elh6 222 30 P p NN cord-001824-7c37elh6 222 31 - - HYPH cord-001824-7c37elh6 222 32 site site NN cord-001824-7c37elh6 222 33 effect effect NN cord-001824-7c37elh6 222 34 caused cause VBN cord-001824-7c37elh6 222 35 by by IN cord-001824-7c37elh6 222 36 modification modification NN cord-001824-7c37elh6 222 37 deficiency deficiency NN cord-001824-7c37elh6 222 38 , , , cord-001824-7c37elh6 222 39 we -PRON- PRP cord-001824-7c37elh6 222 40 decided decide VBD cord-001824-7c37elh6 222 41 to to TO cord-001824-7c37elh6 222 42 use use VB cord-001824-7c37elh6 222 43 Ty1 ty1 JJ cord-001824-7c37elh6 222 44 assay assay NN cord-001824-7c37elh6 222 45 system system NN cord-001824-7c37elh6 222 46 to to TO cord-001824-7c37elh6 222 47 address address VB cord-001824-7c37elh6 222 48 this this DT cord-001824-7c37elh6 222 49 question question NN cord-001824-7c37elh6 222 50 . . . cord-001824-7c37elh6 223 1 The the DT cord-001824-7c37elh6 223 2 expression expression NN cord-001824-7c37elh6 223 3 of of IN cord-001824-7c37elh6 223 4 the the DT cord-001824-7c37elh6 223 5 TYB TYB NNP cord-001824-7c37elh6 223 6 gene gene NN cord-001824-7c37elh6 223 7 of of IN cord-001824-7c37elh6 223 8 yeast yeast NN cord-001824-7c37elh6 224 1 Ty Ty NNP cord-001824-7c37elh6 224 2 retrotransposon retrotransposon NNP cord-001824-7c37elh6 224 3 requires require VBZ cord-001824-7c37elh6 224 4 a a DT cord-001824-7c37elh6 224 5 ribosomal ribosomal JJ cord-001824-7c37elh6 224 6 +1 +1 NN cord-001824-7c37elh6 224 7 frameshift frameshift NN cord-001824-7c37elh6 224 8 event event NN cord-001824-7c37elh6 224 9 caused cause VBN cord-001824-7c37elh6 224 10 by by IN cord-001824-7c37elh6 224 11 a a DT cord-001824-7c37elh6 224 12 peptidyl peptidyl NNP cord-001824-7c37elh6 224 13 - - HYPH cord-001824-7c37elh6 224 14 tRNA trna NN cord-001824-7c37elh6 224 15 slippage slippage NN cord-001824-7c37elh6 224 16 ( ( -LRB- cord-001824-7c37elh6 224 17 41 41 CD cord-001824-7c37elh6 224 18 ) ) -RRB- cord-001824-7c37elh6 224 19 . . . cord-001824-7c37elh6 225 1 Only only RB cord-001824-7c37elh6 225 2 a a DT cord-001824-7c37elh6 225 3 seven seven CD cord-001824-7c37elh6 225 4 nucleotide nucleotide JJ cord-001824-7c37elh6 225 5 sequence sequence NN cord-001824-7c37elh6 225 6 CUU cuu NN cord-001824-7c37elh6 225 7 - - HYPH cord-001824-7c37elh6 225 8 AGG agg NN cord-001824-7c37elh6 225 9 - - HYPH cord-001824-7c37elh6 225 10 C C NNP cord-001824-7c37elh6 225 11 is be VBZ cord-001824-7c37elh6 225 12 required require VBN cord-001824-7c37elh6 225 13 for for IN cord-001824-7c37elh6 225 14 the the DT cord-001824-7c37elh6 225 15 +1 +1 HYPH cord-001824-7c37elh6 225 16 frameshift frameshift NN cord-001824-7c37elh6 225 17 event event NN cord-001824-7c37elh6 225 18 to to TO cord-001824-7c37elh6 225 19 occur occur VB cord-001824-7c37elh6 225 20 and and CC cord-001824-7c37elh6 225 21 thus thus RB cord-001824-7c37elh6 225 22 only only RB cord-001824-7c37elh6 225 23 two two CD cord-001824-7c37elh6 225 24 tRNA tRNA NNP cord-001824-7c37elh6 225 25 species specie NNS cord-001824-7c37elh6 225 26 -- -- : cord-001824-7c37elh6 225 27 tRNA tRNA NNP cord-001824-7c37elh6 225 28 Leu Leu NNP cord-001824-7c37elh6 225 29 UAG UAG NNP cord-001824-7c37elh6 225 30 and and CC cord-001824-7c37elh6 225 31 tRNA trna NN cord-001824-7c37elh6 225 32 Arg Arg NNP cord-001824-7c37elh6 225 33 CCU CCU NNP cord-001824-7c37elh6 225 34 --are --are NN cord-001824-7c37elh6 225 35 participating participate VBG cord-001824-7c37elh6 225 36 in in IN cord-001824-7c37elh6 225 37 this this DT cord-001824-7c37elh6 225 38 event event NN cord-001824-7c37elh6 225 39 . . . cord-001824-7c37elh6 226 1 In in IN cord-001824-7c37elh6 226 2 the the DT cord-001824-7c37elh6 226 3 yeast yeast NN cord-001824-7c37elh6 226 4 strain strain NN cord-001824-7c37elh6 226 5 used use VBN cord-001824-7c37elh6 226 6 , , , cord-001824-7c37elh6 226 7 the the DT cord-001824-7c37elh6 226 8 availability availability NN cord-001824-7c37elh6 226 9 of of IN cord-001824-7c37elh6 226 10 tRNA trna NN cord-001824-7c37elh6 226 11 Arg Arg NNP cord-001824-7c37elh6 226 12 CCU CCU NNP cord-001824-7c37elh6 226 13 is be VBZ cord-001824-7c37elh6 226 14 low low JJ cord-001824-7c37elh6 226 15 resulting result VBG cord-001824-7c37elh6 226 16 in in IN cord-001824-7c37elh6 226 17 a a DT cord-001824-7c37elh6 226 18 low low JJ cord-001824-7c37elh6 226 19 rate rate NN cord-001824-7c37elh6 226 20 of of IN cord-001824-7c37elh6 226 21 ribosomal ribosomal JJ cord-001824-7c37elh6 226 22 A a NN cord-001824-7c37elh6 226 23 - - HYPH cord-001824-7c37elh6 226 24 site site NN cord-001824-7c37elh6 226 25 selection selection NN cord-001824-7c37elh6 226 26 , , , cord-001824-7c37elh6 226 27 which which WDT cord-001824-7c37elh6 226 28 induces induce VBZ cord-001824-7c37elh6 226 29 a a DT cord-001824-7c37elh6 226 30 slippage slippage NN cord-001824-7c37elh6 226 31 by by IN cord-001824-7c37elh6 226 32 tRNA tRNA NNP cord-001824-7c37elh6 226 33 Leu Leu NNP cord-001824-7c37elh6 226 34 UAG UAG NNP cord-001824-7c37elh6 226 35 at at IN cord-001824-7c37elh6 226 36 the the DT cord-001824-7c37elh6 226 37 CUU CUU NNP cord-001824-7c37elh6 226 38 P p NN cord-001824-7c37elh6 226 39 - - HYPH cord-001824-7c37elh6 226 40 site site NN cord-001824-7c37elh6 226 41 codon codon NN cord-001824-7c37elh6 226 42 into into IN cord-001824-7c37elh6 226 43 the the DT cord-001824-7c37elh6 226 44 +1 +1 HYPH cord-001824-7c37elh6 226 45 frame frame NN cord-001824-7c37elh6 226 46 ( ( -LRB- cord-001824-7c37elh6 226 47 UU UU NNP cord-001824-7c37elh6 226 48 - - HYPH cord-001824-7c37elh6 226 49 A A NNP cord-001824-7c37elh6 226 50 ) ) -RRB- cord-001824-7c37elh6 226 51 ( ( -LRB- cord-001824-7c37elh6 226 52 41 41 CD cord-001824-7c37elh6 226 53 ) ) -RRB- cord-001824-7c37elh6 226 54 . . . cord-001824-7c37elh6 227 1 Therefore therefore RB cord-001824-7c37elh6 227 2 , , , cord-001824-7c37elh6 227 3 we -PRON- PRP cord-001824-7c37elh6 227 4 decided decide VBD cord-001824-7c37elh6 227 5 to to TO cord-001824-7c37elh6 227 6 use use VB cord-001824-7c37elh6 227 7 an an DT cord-001824-7c37elh6 227 8 altered altered JJ cord-001824-7c37elh6 227 9 version version NN cord-001824-7c37elh6 227 10 of of IN cord-001824-7c37elh6 227 11 the the DT cord-001824-7c37elh6 227 12 Ty1 ty1 CD cord-001824-7c37elh6 227 13 +1 +1 NFP cord-001824-7c37elh6 228 1 frameshift frameshift NN cord-001824-7c37elh6 228 2 system system NN cord-001824-7c37elh6 228 3 to to TO cord-001824-7c37elh6 228 4 study study VB cord-001824-7c37elh6 228 5 whether whether IN cord-001824-7c37elh6 228 6 or or CC cord-001824-7c37elh6 228 7 not not RB cord-001824-7c37elh6 228 8 the the DT cord-001824-7c37elh6 228 9 +1 +1 HYPH cord-001824-7c37elh6 228 10 frameshifting frameshifting NN cord-001824-7c37elh6 228 11 caused cause VBN cord-001824-7c37elh6 228 12 by by IN cord-001824-7c37elh6 228 13 lack lack NN cord-001824-7c37elh6 228 14 of of IN cord-001824-7c37elh6 228 15 the the DT cord-001824-7c37elh6 228 16 mcm mcm NNP cord-001824-7c37elh6 228 17 5 5 CD cord-001824-7c37elh6 228 18 side side NN cord-001824-7c37elh6 228 19 chain chain NN cord-001824-7c37elh6 228 20 in in IN cord-001824-7c37elh6 228 21 the the DT cord-001824-7c37elh6 228 22 R R NNP cord-001824-7c37elh6 228 23 - - HYPH cord-001824-7c37elh6 228 24 luc luc NNP cord-001824-7c37elh6 228 25 - - HYPH cord-001824-7c37elh6 228 26 F F NNP cord-001824-7c37elh6 228 27 - - HYPH cord-001824-7c37elh6 228 28 luc luc NNP cord-001824-7c37elh6 228 29 system system NN cord-001824-7c37elh6 228 30 , , , cord-001824-7c37elh6 228 31 is be VBZ cord-001824-7c37elh6 228 32 due due JJ cord-001824-7c37elh6 228 33 to to IN cord-001824-7c37elh6 228 34 a a DT cord-001824-7c37elh6 228 35 peptidyl peptidyl NN cord-001824-7c37elh6 228 36 - - HYPH cord-001824-7c37elh6 228 37 tRNA trna NN cord-001824-7c37elh6 228 38 slippage slippage NN cord-001824-7c37elh6 228 39 . . . cord-001824-7c37elh6 229 1 We -PRON- PRP cord-001824-7c37elh6 229 2 altered alter VBD cord-001824-7c37elh6 229 3 the the DT cord-001824-7c37elh6 229 4 ' ' `` cord-001824-7c37elh6 229 5 CUU CUU NNP cord-001824-7c37elh6 229 6 - - HYPH cord-001824-7c37elh6 229 7 AGG agg NN cord-001824-7c37elh6 229 8 - - HYPH cord-001824-7c37elh6 229 9 C c NN cord-001824-7c37elh6 229 10 ' ' '' cord-001824-7c37elh6 229 11 +1 +1 ADD cord-001824-7c37elh6 230 1 frameshift frameshift NN cord-001824-7c37elh6 230 2 site site NN cord-001824-7c37elh6 230 3 by by IN cord-001824-7c37elh6 230 4 changing change VBG cord-001824-7c37elh6 230 5 the the DT cord-001824-7c37elh6 230 6 Arg Arg NNP cord-001824-7c37elh6 230 7 codon codon NN cord-001824-7c37elh6 230 8 ( ( -LRB- cord-001824-7c37elh6 230 9 AGG agg NN cord-001824-7c37elh6 230 10 ) ) -RRB- cord-001824-7c37elh6 230 11 into into IN cord-001824-7c37elh6 230 12 either either CC cord-001824-7c37elh6 230 13 a a DT cord-001824-7c37elh6 230 14 Lys Lys NNP cord-001824-7c37elh6 230 15 codon codon NN cord-001824-7c37elh6 230 16 AAA AAA NNP cord-001824-7c37elh6 230 17 decoded decode VBN cord-001824-7c37elh6 230 18 by by IN cord-001824-7c37elh6 230 19 tRNA tRNA NNP cord-001824-7c37elh6 230 20 Lys Lys NNP cord-001824-7c37elh6 230 21 mcm mcm NNP cord-001824-7c37elh6 230 22 5 5 CD cord-001824-7c37elh6 230 23 s s NN cord-001824-7c37elh6 230 24 2 2 CD cord-001824-7c37elh6 230 25 UUU UUU NNP cord-001824-7c37elh6 230 26 or or CC cord-001824-7c37elh6 230 27 an an DT cord-001824-7c37elh6 230 28 Arg arg NN cord-001824-7c37elh6 230 29 codon codon NN cord-001824-7c37elh6 230 30 AGA AGA NNP cord-001824-7c37elh6 230 31 decoded decode VBN cord-001824-7c37elh6 230 32 by by IN cord-001824-7c37elh6 230 33 tRNA trna NN cord-001824-7c37elh6 230 34 Arg Arg NNP cord-001824-7c37elh6 230 35 mcm mcm NNP cord-001824-7c37elh6 230 36 5 5 CD cord-001824-7c37elh6 230 37 UCU UCU NNP cord-001824-7c37elh6 230 38 to to TO cord-001824-7c37elh6 230 39 test test VB cord-001824-7c37elh6 230 40 whether whether IN cord-001824-7c37elh6 230 41 or or CC cord-001824-7c37elh6 230 42 not not RB cord-001824-7c37elh6 230 43 lack lack NN cord-001824-7c37elh6 230 44 of of IN cord-001824-7c37elh6 230 45 mcm mcm NNP cord-001824-7c37elh6 230 46 5 5 CD cord-001824-7c37elh6 230 47 side side NN cord-001824-7c37elh6 230 48 chain chain NN cord-001824-7c37elh6 230 49 of of IN cord-001824-7c37elh6 230 50 these these DT cord-001824-7c37elh6 231 1 tRNAs trna NNS cord-001824-7c37elh6 231 2 induce induce VBP cord-001824-7c37elh6 231 3 +1 +1 XX cord-001824-7c37elh6 231 4 frameshifting frameshifting NN cord-001824-7c37elh6 231 5 ( ( -LRB- cord-001824-7c37elh6 231 6 Table table NN cord-001824-7c37elh6 231 7 3 3 CD cord-001824-7c37elh6 231 8 ) ) -RRB- cord-001824-7c37elh6 231 9 . . . cord-001824-7c37elh6 232 1 If if IN cord-001824-7c37elh6 232 2 the the DT cord-001824-7c37elh6 232 3 hypomodified hypomodifie VBN cord-001824-7c37elh6 232 4 tRNA tRNA NNP cord-001824-7c37elh6 232 5 is be VBZ cord-001824-7c37elh6 232 6 inefficiently inefficiently RB cord-001824-7c37elh6 232 7 accepted accept VBN cord-001824-7c37elh6 232 8 to to IN cord-001824-7c37elh6 232 9 the the DT cord-001824-7c37elh6 232 10 A A NNP cord-001824-7c37elh6 232 11 - - HYPH cord-001824-7c37elh6 232 12 site site NN cord-001824-7c37elh6 232 13 in in IN cord-001824-7c37elh6 232 14 an an DT cord-001824-7c37elh6 232 15 elp3 elp3 NNP cord-001824-7c37elh6 232 16 mutant mutant NN cord-001824-7c37elh6 232 17 , , , cord-001824-7c37elh6 232 18 the the DT cord-001824-7c37elh6 232 19 AAA AAA NNP cord-001824-7c37elh6 232 20 ( ( -LRB- cord-001824-7c37elh6 232 21 Lys Lys NNP cord-001824-7c37elh6 232 22 ) ) -RRB- cord-001824-7c37elh6 232 23 and/or and/or CC cord-001824-7c37elh6 232 24 AGA AGA NNP cord-001824-7c37elh6 232 25 ( ( -LRB- cord-001824-7c37elh6 232 26 Arg Arg NNP cord-001824-7c37elh6 232 27 ) ) -RRB- cord-001824-7c37elh6 232 28 test test NN cord-001824-7c37elh6 232 29 codons codon NNS cord-001824-7c37elh6 232 30 will will MD cord-001824-7c37elh6 232 31 act act VB cord-001824-7c37elh6 232 32 similarly similarly RB cord-001824-7c37elh6 232 33 as as IN cord-001824-7c37elh6 232 34 codons codon NNS cord-001824-7c37elh6 232 35 decoded decode VBN cord-001824-7c37elh6 232 36 by by IN cord-001824-7c37elh6 232 37 the the DT cord-001824-7c37elh6 232 38 low low JJ cord-001824-7c37elh6 232 39 available available JJ cord-001824-7c37elh6 232 40 tRNA trna NN cord-001824-7c37elh6 232 41 Arg Arg NNP cord-001824-7c37elh6 232 42 CCU CCU NNP cord-001824-7c37elh6 232 43 resulting result VBG cord-001824-7c37elh6 232 44 in in IN cord-001824-7c37elh6 232 45 a a DT cord-001824-7c37elh6 232 46 slow slow JJ cord-001824-7c37elh6 232 47 entry entry NN cord-001824-7c37elh6 232 48 to to IN cord-001824-7c37elh6 232 49 the the DT cord-001824-7c37elh6 232 50 A A NNP cord-001824-7c37elh6 232 51 - - HYPH cord-001824-7c37elh6 232 52 site site NN cord-001824-7c37elh6 232 53 by by IN cord-001824-7c37elh6 232 54 the the DT cord-001824-7c37elh6 232 55 ternary ternary JJ cord-001824-7c37elh6 232 56 complex complex NN cord-001824-7c37elh6 232 57 containing contain VBG cord-001824-7c37elh6 232 58 the the DT cord-001824-7c37elh6 232 59 unmodified unmodified JJ cord-001824-7c37elh6 232 60 tRNA tRNA NNP cord-001824-7c37elh6 232 61 . . . cord-001824-7c37elh6 233 1 If if IN cord-001824-7c37elh6 233 2 so so RB cord-001824-7c37elh6 233 3 , , , cord-001824-7c37elh6 233 4 the the DT cord-001824-7c37elh6 233 5 tRNA tRNA NNP cord-001824-7c37elh6 233 6 Leu Leu NNP cord-001824-7c37elh6 233 7 UAG UAG NNP cord-001824-7c37elh6 233 8 in in IN cord-001824-7c37elh6 233 9 the the DT cord-001824-7c37elh6 233 10 P p NN cord-001824-7c37elh6 233 11 - - HYPH cord-001824-7c37elh6 233 12 site site NN cord-001824-7c37elh6 233 13 will will MD cord-001824-7c37elh6 233 14 slip slip VB cord-001824-7c37elh6 233 15 into into IN cord-001824-7c37elh6 233 16 the the DT cord-001824-7c37elh6 233 17 +1 +1 HYPH cord-001824-7c37elh6 233 18 frame frame NN cord-001824-7c37elh6 233 19 ( ( -LRB- cord-001824-7c37elh6 233 20 from from IN cord-001824-7c37elh6 233 21 cognate cognate JJ cord-001824-7c37elh6 233 22 CUU CUU NNP cord-001824-7c37elh6 233 23 to to IN cord-001824-7c37elh6 233 24 non non JJ cord-001824-7c37elh6 233 25 - - JJ cord-001824-7c37elh6 233 26 cognate cognate JJ cord-001824-7c37elh6 233 27 UU UU NNP cord-001824-7c37elh6 233 28 - - HYPH cord-001824-7c37elh6 233 29 A A NNP cord-001824-7c37elh6 233 30 ) ) -RRB- cord-001824-7c37elh6 233 31 . . . cord-001824-7c37elh6 234 1 All all DT cord-001824-7c37elh6 234 2 alterations alteration NNS cord-001824-7c37elh6 234 3 of of IN cord-001824-7c37elh6 234 4 the the DT cord-001824-7c37elh6 234 5 Ty1 ty1 CD cord-001824-7c37elh6 234 6 sequence sequence NN cord-001824-7c37elh6 234 7 were be VBD cord-001824-7c37elh6 234 8 made make VBN cord-001824-7c37elh6 234 9 in in IN cord-001824-7c37elh6 234 10 the the DT cord-001824-7c37elh6 234 11 HIS4A::lacZ his4a::lacz CD cord-001824-7c37elh6 234 12 frameshift frameshift NN cord-001824-7c37elh6 234 13 reporter reporter NN cord-001824-7c37elh6 234 14 plasmid plasmid NN cord-001824-7c37elh6 234 15 ( ( -LRB- cord-001824-7c37elh6 234 16 see see VB cord-001824-7c37elh6 234 17 Materials material NNS cord-001824-7c37elh6 234 18 and and CC cord-001824-7c37elh6 234 19 Methods method NNS cord-001824-7c37elh6 234 20 ) ) -RRB- cord-001824-7c37elh6 235 1 ( ( -LRB- cord-001824-7c37elh6 235 2 Figure figure NN cord-001824-7c37elh6 235 3 4B 4b CD cord-001824-7c37elh6 235 4 ) ) -RRB- cord-001824-7c37elh6 235 5 . . . cord-001824-7c37elh6 236 1 The the DT cord-001824-7c37elh6 236 2 levels level NNS cord-001824-7c37elh6 236 3 of of IN cord-001824-7c37elh6 236 4 frameshifting frameshifte VBG cord-001824-7c37elh6 236 5 were be VBD cord-001824-7c37elh6 236 6 calculated calculate VBN cord-001824-7c37elh6 236 7 by by IN cord-001824-7c37elh6 236 8 dividing divide VBG cord-001824-7c37elh6 236 9 the the DT cord-001824-7c37elh6 236 10 ␤ ␤ NNP cord-001824-7c37elh6 236 11 -galactosidase -galactosidase CD cord-001824-7c37elh6 236 12 values value NNS cord-001824-7c37elh6 236 13 generated generate VBN cord-001824-7c37elh6 236 14 from from IN cord-001824-7c37elh6 236 15 the the DT cord-001824-7c37elh6 236 16 test test NN cord-001824-7c37elh6 236 17 construct construct VBP cord-001824-7c37elh6 236 18 with with IN cord-001824-7c37elh6 236 19 the the DT cord-001824-7c37elh6 236 20 values value NNS cord-001824-7c37elh6 236 21 from from IN cord-001824-7c37elh6 236 22 the the DT cord-001824-7c37elh6 236 23 in in IN cord-001824-7c37elh6 236 24 - - HYPH cord-001824-7c37elh6 236 25 frame frame NN cord-001824-7c37elh6 236 26 control control NN cord-001824-7c37elh6 236 27 construct construct VB cord-001824-7c37elh6 236 28 . . . cord-001824-7c37elh6 237 1 Table table NN cord-001824-7c37elh6 237 2 3 3 CD cord-001824-7c37elh6 237 3 shows show VBZ cord-001824-7c37elh6 237 4 that that IN cord-001824-7c37elh6 237 5 for for IN cord-001824-7c37elh6 237 6 the the DT cord-001824-7c37elh6 237 7 ' ' `` cord-001824-7c37elh6 237 8 CUU CUU NNP cord-001824-7c37elh6 237 9 - - HYPH cord-001824-7c37elh6 237 10 AAA AAA NNP cord-001824-7c37elh6 237 11 - - HYPH cord-001824-7c37elh6 237 12 C C NNP cord-001824-7c37elh6 237 13 ' ' '' cord-001824-7c37elh6 237 14 Lys Lys NNP cord-001824-7c37elh6 237 15 codon codon NN cord-001824-7c37elh6 237 16 test test NN cord-001824-7c37elh6 237 17 construct construct NN cord-001824-7c37elh6 237 18 , , , cord-001824-7c37elh6 237 19 lack lack NN cord-001824-7c37elh6 237 20 of of IN cord-001824-7c37elh6 237 21 mcm mcm NNP cord-001824-7c37elh6 237 22 5 5 CD cord-001824-7c37elh6 237 23 side side NN cord-001824-7c37elh6 237 24 group group NN cord-001824-7c37elh6 237 25 in in IN cord-001824-7c37elh6 237 26 the the DT cord-001824-7c37elh6 237 27 mcm mcm NNP cord-001824-7c37elh6 237 28 5 5 CD cord-001824-7c37elh6 237 29 s s NNP cord-001824-7c37elh6 238 1 2 2 LS cord-001824-7c37elh6 238 2 U u NN cord-001824-7c37elh6 238 3 nucleoside nucleoside RB cord-001824-7c37elh6 238 4 of of IN cord-001824-7c37elh6 238 5 tRNA tRNA NNP cord-001824-7c37elh6 238 6 Lys Lys NNP cord-001824-7c37elh6 238 7 mcm mcm NNP cord-001824-7c37elh6 239 1 5 5 LS cord-001824-7c37elh6 239 2 s s POS cord-001824-7c37elh6 239 3 2 2 CD cord-001824-7c37elh6 239 4 UUU UUU NNP cord-001824-7c37elh6 239 5 resulted result VBD cord-001824-7c37elh6 239 6 in in IN cord-001824-7c37elh6 239 7 10-fold 10-fold JJ cord-001824-7c37elh6 239 8 increased increase VBN cord-001824-7c37elh6 239 9 +1 +1 NNS cord-001824-7c37elh6 239 10 frameshifting frameshifte VBG cord-001824-7c37elh6 239 11 in in IN cord-001824-7c37elh6 239 12 the the DT cord-001824-7c37elh6 239 13 elp3 elp3 NNP cord-001824-7c37elh6 239 14 mutant mutant NN cord-001824-7c37elh6 239 15 compared compare VBN cord-001824-7c37elh6 239 16 to to IN cord-001824-7c37elh6 239 17 wild wild JJ cord-001824-7c37elh6 239 18 type type NN cord-001824-7c37elh6 239 19 . . . cord-001824-7c37elh6 240 1 In in IN cord-001824-7c37elh6 240 2 contrast contrast NN cord-001824-7c37elh6 240 3 , , , cord-001824-7c37elh6 240 4 for for IN cord-001824-7c37elh6 240 5 the the DT cord-001824-7c37elh6 240 6 ' ' `` cord-001824-7c37elh6 240 7 CUU CUU NNP cord-001824-7c37elh6 240 8 - - HYPH cord-001824-7c37elh6 240 9 AGA AGA NNP cord-001824-7c37elh6 240 10 - - HYPH cord-001824-7c37elh6 240 11 C C NNP cord-001824-7c37elh6 240 12 ' ' '' cord-001824-7c37elh6 240 13 Arg arg NN cord-001824-7c37elh6 240 14 codon codon NN cord-001824-7c37elh6 240 15 test test NN cord-001824-7c37elh6 240 16 construct construct NN cord-001824-7c37elh6 240 17 , , , cord-001824-7c37elh6 240 18 lack lack NN cord-001824-7c37elh6 240 19 of of IN cord-001824-7c37elh6 240 20 mcm mcm NNP cord-001824-7c37elh6 240 21 5 5 CD cord-001824-7c37elh6 240 22 side side NN cord-001824-7c37elh6 240 23 group group NN cord-001824-7c37elh6 240 24 in in IN cord-001824-7c37elh6 240 25 tRNA tRNA NNP cord-001824-7c37elh6 240 26 Arg Arg NNP cord-001824-7c37elh6 240 27 mcm mcm NNP cord-001824-7c37elh6 240 28 5 5 CD cord-001824-7c37elh6 240 29 UCU UCU NNP cord-001824-7c37elh6 240 30 did do VBD cord-001824-7c37elh6 240 31 not not RB cord-001824-7c37elh6 240 32 increase increase VB cord-001824-7c37elh6 240 33 frameshifting frameshifte VBG cord-001824-7c37elh6 240 34 in in IN cord-001824-7c37elh6 240 35 the the DT cord-001824-7c37elh6 240 36 elp3 elp3 NNP cord-001824-7c37elh6 240 37 mutant mutant NN cord-001824-7c37elh6 240 38 compared compare VBN cord-001824-7c37elh6 240 39 to to IN cord-001824-7c37elh6 240 40 the the DT cord-001824-7c37elh6 240 41 wild wild JJ cord-001824-7c37elh6 240 42 type type NN cord-001824-7c37elh6 240 43 ( ( -LRB- cord-001824-7c37elh6 240 44 Table table NN cord-001824-7c37elh6 240 45 3 3 CD cord-001824-7c37elh6 240 46 ) ) -RRB- cord-001824-7c37elh6 240 47 . . . cord-001824-7c37elh6 241 1 Thus thus RB cord-001824-7c37elh6 241 2 , , , cord-001824-7c37elh6 241 3 similar similar JJ cord-001824-7c37elh6 241 4 to to IN cord-001824-7c37elh6 241 5 the the DT cord-001824-7c37elh6 241 6 results result NNS cord-001824-7c37elh6 241 7 obtained obtain VBN cord-001824-7c37elh6 241 8 by by IN cord-001824-7c37elh6 241 9 the the DT cord-001824-7c37elh6 241 10 luciferase luciferase NN cord-001824-7c37elh6 241 11 system system NN cord-001824-7c37elh6 241 12 lack lack NN cord-001824-7c37elh6 241 13 of of IN cord-001824-7c37elh6 241 14 the the DT cord-001824-7c37elh6 241 15 mcm mcm NNP cord-001824-7c37elh6 241 16 5 5 CD cord-001824-7c37elh6 241 17 group group NN cord-001824-7c37elh6 241 18 of of IN cord-001824-7c37elh6 241 19 tRNA tRNA NNP cord-001824-7c37elh6 241 20 Lys Lys NNP cord-001824-7c37elh6 241 21 mcm mcm NNP cord-001824-7c37elh6 241 22 5 5 CD cord-001824-7c37elh6 241 23 s s NN cord-001824-7c37elh6 241 24 2 2 CD cord-001824-7c37elh6 242 1 UUU UUU NNP cord-001824-7c37elh6 242 2 induced induce VBD cord-001824-7c37elh6 242 3 increased increase VBD cord-001824-7c37elh6 242 4 +1 +1 NNS cord-001824-7c37elh6 242 5 frameshifting frameshifting NN cord-001824-7c37elh6 242 6 . . . cord-001824-7c37elh6 243 1 Although although IN cord-001824-7c37elh6 243 2 we -PRON- PRP cord-001824-7c37elh6 243 3 observed observe VBD cord-001824-7c37elh6 243 4 an an DT cord-001824-7c37elh6 243 5 increased increase VBN cord-001824-7c37elh6 243 6 frameshifting frameshifte VBG cord-001824-7c37elh6 243 7 for for IN cord-001824-7c37elh6 243 8 mcm mcm NNP cord-001824-7c37elh6 243 9 5 5 CD cord-001824-7c37elh6 243 10 deficient deficient JJ cord-001824-7c37elh6 243 11 tRNA trna NN cord-001824-7c37elh6 243 12 Arg arg NN cord-001824-7c37elh6 243 13 mcm mcm NNP cord-001824-7c37elh6 243 14 5 5 CD cord-001824-7c37elh6 243 15 UCU UCU NNP cord-001824-7c37elh6 243 16 in in IN cord-001824-7c37elh6 243 17 the the DT cord-001824-7c37elh6 243 18 luciferase luciferase NN cord-001824-7c37elh6 243 19 assay assay NN cord-001824-7c37elh6 243 20 system system NN cord-001824-7c37elh6 243 21 ( ( -LRB- cord-001824-7c37elh6 243 22 Table Table NNP cord-001824-7c37elh6 243 23 2 2 CD cord-001824-7c37elh6 243 24 ) ) -RRB- cord-001824-7c37elh6 243 25 , , , cord-001824-7c37elh6 243 26 this this DT cord-001824-7c37elh6 243 27 was be VBD cord-001824-7c37elh6 243 28 not not RB cord-001824-7c37elh6 243 29 the the DT cord-001824-7c37elh6 243 30 case case NN cord-001824-7c37elh6 243 31 using use VBG cord-001824-7c37elh6 243 32 the the DT cord-001824-7c37elh6 243 33 Ty1 ty1 CD cord-001824-7c37elh6 243 34 assay assay NN cord-001824-7c37elh6 243 35 system system NN cord-001824-7c37elh6 243 36 ( ( -LRB- cord-001824-7c37elh6 243 37 Table Table NNP cord-001824-7c37elh6 243 38 3 3 CD cord-001824-7c37elh6 243 39 ) ) -RRB- cord-001824-7c37elh6 243 40 . . . cord-001824-7c37elh6 244 1 To to TO cord-001824-7c37elh6 244 2 analyze analyze VB cord-001824-7c37elh6 244 3 whether whether IN cord-001824-7c37elh6 244 4 lack lack NN cord-001824-7c37elh6 244 5 of of IN cord-001824-7c37elh6 244 6 the the DT cord-001824-7c37elh6 244 7 mcm mcm NNP cord-001824-7c37elh6 244 8 5 5 CD cord-001824-7c37elh6 244 9 group group NN cord-001824-7c37elh6 244 10 of of IN cord-001824-7c37elh6 244 11 tRNA tRNA NNP cord-001824-7c37elh6 244 12 Lys Lys NNP cord-001824-7c37elh6 244 13 mcm mcm NNP cord-001824-7c37elh6 244 14 5 5 CD cord-001824-7c37elh6 244 15 s s NN cord-001824-7c37elh6 244 16 2 2 CD cord-001824-7c37elh6 244 17 UUU UUU NNP cord-001824-7c37elh6 244 18 could could MD cord-001824-7c37elh6 244 19 induce induce VB cord-001824-7c37elh6 244 20 +1 +1 XX cord-001824-7c37elh6 244 21 frameshifting frameshifte VBG cord-001824-7c37elh6 244 22 due due IN cord-001824-7c37elh6 244 23 to to IN cord-001824-7c37elh6 244 24 a a DT cord-001824-7c37elh6 244 25 Psite Psite NNP cord-001824-7c37elh6 244 26 effect effect NN cord-001824-7c37elh6 244 27 by by IN cord-001824-7c37elh6 244 28 modification modification NN cord-001824-7c37elh6 244 29 deficiency deficiency NN cord-001824-7c37elh6 244 30 , , , cord-001824-7c37elh6 244 31 we -PRON- PRP cord-001824-7c37elh6 244 32 placed place VBD cord-001824-7c37elh6 244 33 a a DT cord-001824-7c37elh6 244 34 Lys Lys NNP cord-001824-7c37elh6 244 35 codon codon NN cord-001824-7c37elh6 244 36 AAA aaa NN cord-001824-7c37elh6 244 37 instead instead RB cord-001824-7c37elh6 244 38 of of IN cord-001824-7c37elh6 244 39 the the DT cord-001824-7c37elh6 244 40 CUU CUU NNP cord-001824-7c37elh6 244 41 codon codon NN cord-001824-7c37elh6 244 42 in in IN cord-001824-7c37elh6 244 43 the the DT cord-001824-7c37elh6 244 44 Ty1 ty1 CD cord-001824-7c37elh6 244 45 assay assay NN cord-001824-7c37elh6 244 46 system system NN cord-001824-7c37elh6 244 47 and and CC cord-001824-7c37elh6 244 48 varied vary VBD cord-001824-7c37elh6 244 49 the the DT cord-001824-7c37elh6 244 50 following follow VBG cord-001824-7c37elh6 244 51 codon codon NN cord-001824-7c37elh6 244 52 . . . cord-001824-7c37elh6 245 1 The the DT cord-001824-7c37elh6 245 2 concentration concentration NN cord-001824-7c37elh6 245 3 of of IN cord-001824-7c37elh6 245 4 a a DT cord-001824-7c37elh6 245 5 tRNA tRNA NNP cord-001824-7c37elh6 245 6 species species NN cord-001824-7c37elh6 245 7 is be VBZ cord-001824-7c37elh6 245 8 proportional proportional JJ cord-001824-7c37elh6 245 9 to to IN cord-001824-7c37elh6 245 10 the the DT cord-001824-7c37elh6 245 11 number number NN cord-001824-7c37elh6 245 12 of of IN cord-001824-7c37elh6 245 13 the the DT cord-001824-7c37elh6 245 14 corre corre NNP cord-001824-7c37elh6 245 15 - - HYPH cord-001824-7c37elh6 245 16 sponding sponde VBG cord-001824-7c37elh6 245 17 tRNA trna NN cord-001824-7c37elh6 245 18 genes gene NNS cord-001824-7c37elh6 245 19 in in IN cord-001824-7c37elh6 245 20 the the DT cord-001824-7c37elh6 245 21 yeast yeast NN cord-001824-7c37elh6 245 22 genome genome NN cord-001824-7c37elh6 245 23 ( ( -LRB- cord-001824-7c37elh6 245 24 50 50 CD cord-001824-7c37elh6 245 25 ) ) -RRB- cord-001824-7c37elh6 245 26 . . . cord-001824-7c37elh6 246 1 Accordingly accordingly RB cord-001824-7c37elh6 246 2 , , , cord-001824-7c37elh6 246 3 by by IN cord-001824-7c37elh6 246 4 placing place VBG cord-001824-7c37elh6 246 5 different different JJ cord-001824-7c37elh6 246 6 codons codon NNS cord-001824-7c37elh6 246 7 in in IN cord-001824-7c37elh6 246 8 the the DT cord-001824-7c37elh6 246 9 A A NNP cord-001824-7c37elh6 246 10 - - HYPH cord-001824-7c37elh6 246 11 site site NN cord-001824-7c37elh6 246 12 , , , cord-001824-7c37elh6 246 13 the the DT cord-001824-7c37elh6 246 14 concentration concentration NN cord-001824-7c37elh6 246 15 of of IN cord-001824-7c37elh6 246 16 the the DT cord-001824-7c37elh6 246 17 corresponding corresponding JJ cord-001824-7c37elh6 246 18 tRNAs trna NNS cord-001824-7c37elh6 246 19 in in IN cord-001824-7c37elh6 246 20 the the DT cord-001824-7c37elh6 246 21 cell cell NN cord-001824-7c37elh6 246 22 reading read VBG cord-001824-7c37elh6 246 23 this this DT cord-001824-7c37elh6 246 24 codon codon NN cord-001824-7c37elh6 246 25 is be VBZ cord-001824-7c37elh6 246 26 changed change VBN cord-001824-7c37elh6 246 27 and and CC cord-001824-7c37elh6 246 28 thereby thereby RB cord-001824-7c37elh6 246 29 the the DT cord-001824-7c37elh6 246 30 efficiency efficiency NN cord-001824-7c37elh6 246 31 of of IN cord-001824-7c37elh6 246 32 reading read VBG cord-001824-7c37elh6 246 33 the the DT cord-001824-7c37elh6 246 34 A A NNP cord-001824-7c37elh6 246 35 - - HYPH cord-001824-7c37elh6 246 36 site site NN cord-001824-7c37elh6 246 37 codon codon NN cord-001824-7c37elh6 246 38 is be VBZ cord-001824-7c37elh6 246 39 altered alter VBN cord-001824-7c37elh6 246 40 . . . cord-001824-7c37elh6 247 1 Thus thus RB cord-001824-7c37elh6 247 2 , , , cord-001824-7c37elh6 247 3 to to TO cord-001824-7c37elh6 247 4 test test VB cord-001824-7c37elh6 247 5 for for IN cord-001824-7c37elh6 247 6 a a DT cord-001824-7c37elh6 247 7 possible possible JJ cord-001824-7c37elh6 247 8 P p NN cord-001824-7c37elh6 247 9 - - HYPH cord-001824-7c37elh6 247 10 site site NN cord-001824-7c37elh6 247 11 effect effect NN cord-001824-7c37elh6 247 12 induced induce VBN cord-001824-7c37elh6 247 13 by by IN cord-001824-7c37elh6 247 14 a a DT cord-001824-7c37elh6 247 15 lack lack NN cord-001824-7c37elh6 247 16 of of IN cord-001824-7c37elh6 247 17 the the DT cord-001824-7c37elh6 247 18 mcm mcm NNP cord-001824-7c37elh6 247 19 5 5 CD cord-001824-7c37elh6 247 20 group group NNP cord-001824-7c37elh6 247 21 of of IN cord-001824-7c37elh6 247 22 mcm mcm NNP cord-001824-7c37elh6 247 23 5 5 CD cord-001824-7c37elh6 247 24 s s SYM cord-001824-7c37elh6 247 25 2 2 CD cord-001824-7c37elh6 247 26 U U NNP cord-001824-7c37elh6 247 27 in in IN cord-001824-7c37elh6 247 28 Lys Lys NNP cord-001824-7c37elh6 247 29 - - HYPH cord-001824-7c37elh6 247 30 tRNA tRNA NNP cord-001824-7c37elh6 248 1 we -PRON- PRP cord-001824-7c37elh6 248 2 placed place VBD cord-001824-7c37elh6 248 3 an an DT cord-001824-7c37elh6 248 4 Arg arg NN cord-001824-7c37elh6 248 5 codon codon NN cord-001824-7c37elh6 248 6 AGG agg NN cord-001824-7c37elh6 248 7 read read VBN cord-001824-7c37elh6 248 8 by by IN cord-001824-7c37elh6 248 9 the the DT cord-001824-7c37elh6 248 10 rare rare JJ cord-001824-7c37elh6 248 11 cognate cognate NN cord-001824-7c37elh6 248 12 tRNA trna NN cord-001824-7c37elh6 248 13 Arg Arg NNP cord-001824-7c37elh6 248 14 CCU CCU NNP cord-001824-7c37elh6 248 15 ( ( -LRB- cord-001824-7c37elh6 248 16 1 1 CD cord-001824-7c37elh6 248 17 genomic genomic JJ cord-001824-7c37elh6 248 18 copy copy NN cord-001824-7c37elh6 248 19 ) ) -RRB- cord-001824-7c37elh6 248 20 and and CC cord-001824-7c37elh6 248 21 the the DT cord-001824-7c37elh6 248 22 near near JJ cord-001824-7c37elh6 248 23 cognate cognate NNP cord-001824-7c37elh6 248 24 tRNA trna NN cord-001824-7c37elh6 248 25 Arg Arg NNP cord-001824-7c37elh6 248 26 mcm mcm NNP cord-001824-7c37elh6 248 27 5 5 CD cord-001824-7c37elh6 248 28 UCU UCU NNP cord-001824-7c37elh6 248 29 ( ( -LRB- cord-001824-7c37elh6 248 30 11 11 CD cord-001824-7c37elh6 248 31 genomic genomic JJ cord-001824-7c37elh6 248 32 copies copy NNS cord-001824-7c37elh6 248 33 ) ) -RRB- cord-001824-7c37elh6 248 34 after after IN cord-001824-7c37elh6 248 35 the the DT cord-001824-7c37elh6 248 36 Lys Lys NNP cord-001824-7c37elh6 248 37 codon codon NN cord-001824-7c37elh6 248 38 AAA AAA NNP cord-001824-7c37elh6 248 39 . . . cord-001824-7c37elh6 249 1 In in IN cord-001824-7c37elh6 249 2 an an DT cord-001824-7c37elh6 249 3 elp3 elp3 CD cord-001824-7c37elh6 249 4 mutant mutant JJ cord-001824-7c37elh6 249 5 tRNA trna NN cord-001824-7c37elh6 249 6 Arg Arg NNP cord-001824-7c37elh6 249 7 CCU CCU NNP cord-001824-7c37elh6 249 8 is be VBZ cord-001824-7c37elh6 249 9 essential essential JJ cord-001824-7c37elh6 249 10 , , , cord-001824-7c37elh6 249 11 demonstrating demonstrate VBG cord-001824-7c37elh6 249 12 that that IN cord-001824-7c37elh6 249 13 mcm mcm NNP cord-001824-7c37elh6 249 14 5 5 CD cord-001824-7c37elh6 249 15 group group NN cord-001824-7c37elh6 249 16 of of IN cord-001824-7c37elh6 249 17 the the DT cord-001824-7c37elh6 249 18 near near JJ cord-001824-7c37elh6 249 19 cognate cognate JJ cord-001824-7c37elh6 249 20 Arg arg NN cord-001824-7c37elh6 249 21 - - HYPH cord-001824-7c37elh6 249 22 tRNA tRNA NNP cord-001824-7c37elh6 249 23 is be VBZ cord-001824-7c37elh6 249 24 required require VBN cord-001824-7c37elh6 249 25 for for IN cord-001824-7c37elh6 249 26 efficient efficient JJ cord-001824-7c37elh6 249 27 reading reading NN cord-001824-7c37elh6 249 28 of of IN cord-001824-7c37elh6 249 29 the the DT cord-001824-7c37elh6 249 30 Arg arg NN cord-001824-7c37elh6 249 31 codon codon NN cord-001824-7c37elh6 249 32 AGG agg NN cord-001824-7c37elh6 249 33 ( ( -LRB- cord-001824-7c37elh6 249 34 26 26 CD cord-001824-7c37elh6 249 35 ) ) -RRB- cord-001824-7c37elh6 249 36 . . . cord-001824-7c37elh6 250 1 Therefore therefore RB cord-001824-7c37elh6 250 2 , , , cord-001824-7c37elh6 250 3 in in IN cord-001824-7c37elh6 250 4 an an DT cord-001824-7c37elh6 250 5 elp3 elp3 NNP cord-001824-7c37elh6 250 6 mutant mutant NN cord-001824-7c37elh6 250 7 , , , cord-001824-7c37elh6 250 8 a a DT cord-001824-7c37elh6 250 9 situation situation NN cord-001824-7c37elh6 250 10 is be VBZ cord-001824-7c37elh6 250 11 generated generate VBN cord-001824-7c37elh6 250 12 where where WRB cord-001824-7c37elh6 250 13 the the DT cord-001824-7c37elh6 250 14 AGG agg NN cord-001824-7c37elh6 250 15 codon codon NN cord-001824-7c37elh6 250 16 is be VBZ cord-001824-7c37elh6 250 17 read read VBN cord-001824-7c37elh6 250 18 slowly slowly RB cord-001824-7c37elh6 250 19 since since IN cord-001824-7c37elh6 250 20 it -PRON- PRP cord-001824-7c37elh6 250 21 is be VBZ cord-001824-7c37elh6 250 22 read read VBN cord-001824-7c37elh6 250 23 mainly mainly RB cord-001824-7c37elh6 250 24 by by IN cord-001824-7c37elh6 250 25 the the DT cord-001824-7c37elh6 250 26 rare rare JJ cord-001824-7c37elh6 250 27 cognate cognate NN cord-001824-7c37elh6 250 28 tRNA trna NN cord-001824-7c37elh6 250 29 Arg Arg NNP cord-001824-7c37elh6 250 30 CCU CCU NNP cord-001824-7c37elh6 250 31 and and CC cord-001824-7c37elh6 250 32 inefficiently inefficiently RB cord-001824-7c37elh6 250 33 by by IN cord-001824-7c37elh6 250 34 the the DT cord-001824-7c37elh6 250 35 more more RBR cord-001824-7c37elh6 250 36 abundant abundant JJ cord-001824-7c37elh6 250 37 modification modification NN cord-001824-7c37elh6 250 38 deficient deficient JJ cord-001824-7c37elh6 250 39 near near IN cord-001824-7c37elh6 250 40 cognate cognate JJ cord-001824-7c37elh6 250 41 tRNA trna NN cord-001824-7c37elh6 250 42 Arg Arg NNP cord-001824-7c37elh6 250 43 mcm mcm NNP cord-001824-7c37elh6 250 44 5 5 CD cord-001824-7c37elh6 250 45 UCU UCU NNP cord-001824-7c37elh6 250 46 . . . cord-001824-7c37elh6 251 1 Such such PDT cord-001824-7c37elh6 251 2 a a DT cord-001824-7c37elh6 251 3 condition condition NN cord-001824-7c37elh6 251 4 would would MD cord-001824-7c37elh6 251 5 allow allow VB cord-001824-7c37elh6 251 6 tRNA tRNA NNP cord-001824-7c37elh6 251 7 Lys Lys NNP cord-001824-7c37elh6 251 8 mcm mcm NNP cord-001824-7c37elh6 251 9 5 5 CD cord-001824-7c37elh6 251 10 s s NN cord-001824-7c37elh6 251 11 2 2 CD cord-001824-7c37elh6 251 12 UUU UUU NNP cord-001824-7c37elh6 251 13 at at IN cord-001824-7c37elh6 251 14 the the DT cord-001824-7c37elh6 251 15 Psite Psite NNP cord-001824-7c37elh6 251 16 to to TO cord-001824-7c37elh6 251 17 slip slip VB cord-001824-7c37elh6 251 18 to to IN cord-001824-7c37elh6 251 19 the the DT cord-001824-7c37elh6 251 20 +1 +1 HYPH cord-001824-7c37elh6 251 21 translational translational JJ cord-001824-7c37elh6 251 22 frame frame NN cord-001824-7c37elh6 251 23 . . . cord-001824-7c37elh6 252 1 Furthermore furthermore RB cord-001824-7c37elh6 252 2 , , , cord-001824-7c37elh6 252 3 we -PRON- PRP cord-001824-7c37elh6 252 4 made make VBD cord-001824-7c37elh6 252 5 test test NN cord-001824-7c37elh6 252 6 constructs construct NNS cord-001824-7c37elh6 252 7 to to TO cord-001824-7c37elh6 252 8 increase increase VB cord-001824-7c37elh6 252 9 the the DT cord-001824-7c37elh6 252 10 rate rate NN cord-001824-7c37elh6 252 11 of of IN cord-001824-7c37elh6 252 12 A a DT cord-001824-7c37elh6 252 13 - - HYPH cord-001824-7c37elh6 252 14 site site NN cord-001824-7c37elh6 252 15 selection selection NN cord-001824-7c37elh6 252 16 by by IN cord-001824-7c37elh6 252 17 introducing introduce VBG cord-001824-7c37elh6 252 18 either either CC cord-001824-7c37elh6 252 19 an an DT cord-001824-7c37elh6 252 20 Ile Ile NNP cord-001824-7c37elh6 252 21 codon codon NN cord-001824-7c37elh6 252 22 AUU AUU NNP cord-001824-7c37elh6 252 23 decoded decode VBN cord-001824-7c37elh6 252 24 by by IN cord-001824-7c37elh6 252 25 cognate cognate NNP cord-001824-7c37elh6 252 26 tRNA tRNA NNP cord-001824-7c37elh6 252 27 Ile Ile NNP cord-001824-7c37elh6 252 28 AAU AAU NNP cord-001824-7c37elh6 252 29 present present JJ cord-001824-7c37elh6 252 30 in in IN cord-001824-7c37elh6 252 31 13 13 CD cord-001824-7c37elh6 252 32 genomic genomic JJ cord-001824-7c37elh6 252 33 copies copy NNS cord-001824-7c37elh6 252 34 or or CC cord-001824-7c37elh6 252 35 an an DT cord-001824-7c37elh6 252 36 Arg arg NN cord-001824-7c37elh6 252 37 codon codon NN cord-001824-7c37elh6 252 38 CGU CGU NNP cord-001824-7c37elh6 252 39 decoded decode VBN cord-001824-7c37elh6 252 40 by by IN cord-001824-7c37elh6 253 1 cognate cognate NNP cord-001824-7c37elh6 253 2 tRNA tRNA NNP cord-001824-7c37elh6 253 3 Arg Arg NNP cord-001824-7c37elh6 253 4 ACG ACG NNP cord-001824-7c37elh6 253 5 present present JJ cord-001824-7c37elh6 253 6 in in IN cord-001824-7c37elh6 253 7 6 6 CD cord-001824-7c37elh6 253 8 genomic genomic JJ cord-001824-7c37elh6 253 9 copies copy NNS cord-001824-7c37elh6 253 10 after after IN cord-001824-7c37elh6 253 11 Lys Lys NNP cord-001824-7c37elh6 253 12 codon codon NN cord-001824-7c37elh6 253 13 AAA AAA NNP cord-001824-7c37elh6 253 14 ( ( -LRB- cord-001824-7c37elh6 253 15 Table Table NNP cord-001824-7c37elh6 253 16 3 3 CD cord-001824-7c37elh6 253 17 ) ) -RRB- cord-001824-7c37elh6 253 18 . . . cord-001824-7c37elh6 254 1 By by IN cord-001824-7c37elh6 254 2 varying vary VBG cord-001824-7c37elh6 254 3 concentration concentration NN cord-001824-7c37elh6 254 4 of of IN cord-001824-7c37elh6 254 5 the the DT cord-001824-7c37elh6 254 6 potential potential JJ cord-001824-7c37elh6 254 7 A a NN cord-001824-7c37elh6 254 8 - - HYPH cord-001824-7c37elh6 254 9 site site NN cord-001824-7c37elh6 254 10 coding coding NN cord-001824-7c37elh6 254 11 tRNAs trna NNS cord-001824-7c37elh6 254 12 from from IN cord-001824-7c37elh6 254 13 1 1 CD cord-001824-7c37elh6 254 14 genomic genomic JJ cord-001824-7c37elh6 254 15 copy copy NN cord-001824-7c37elh6 254 16 to to IN cord-001824-7c37elh6 254 17 13 13 CD cord-001824-7c37elh6 254 18 genomic genomic JJ cord-001824-7c37elh6 254 19 copies copy NNS cord-001824-7c37elh6 254 20 , , , cord-001824-7c37elh6 254 21 we -PRON- PRP cord-001824-7c37elh6 254 22 did do VBD cord-001824-7c37elh6 254 23 not not RB cord-001824-7c37elh6 254 24 observe observe VB cord-001824-7c37elh6 254 25 any any DT cord-001824-7c37elh6 254 26 significant significant JJ cord-001824-7c37elh6 254 27 difference difference NN cord-001824-7c37elh6 254 28 in in IN cord-001824-7c37elh6 254 29 the the DT cord-001824-7c37elh6 254 30 levels level NNS cord-001824-7c37elh6 254 31 of of IN cord-001824-7c37elh6 254 32 +1 +1 NN cord-001824-7c37elh6 254 33 frameshifting frameshifte VBG cord-001824-7c37elh6 254 34 between between IN cord-001824-7c37elh6 254 35 wild wild JJ cord-001824-7c37elh6 254 36 type type NN cord-001824-7c37elh6 254 37 and and CC cord-001824-7c37elh6 254 38 elp3 elp3 NN cord-001824-7c37elh6 254 39 mutant mutant JJ cord-001824-7c37elh6 254 40 ( ( -LRB- cord-001824-7c37elh6 254 41 Table Table NNP cord-001824-7c37elh6 254 42 3 3 CD cord-001824-7c37elh6 254 43 ) ) -RRB- cord-001824-7c37elh6 254 44 . . . cord-001824-7c37elh6 255 1 Apparently apparently RB cord-001824-7c37elh6 255 2 , , , cord-001824-7c37elh6 255 3 the the DT cord-001824-7c37elh6 255 4 possible possible JJ cord-001824-7c37elh6 255 5 peptidyl peptidyl NNP cord-001824-7c37elh6 255 6 - - HYPH cord-001824-7c37elh6 255 7 tRNA tRNA NNP cord-001824-7c37elh6 255 8 Lys Lys NNP cord-001824-7c37elh6 255 9 mcm mcm NNP cord-001824-7c37elh6 255 10 5 5 CD cord-001824-7c37elh6 255 11 s s NN cord-001824-7c37elh6 255 12 2 2 CD cord-001824-7c37elh6 255 13 UUU UUU NNP cord-001824-7c37elh6 255 14 slippage slippage NN cord-001824-7c37elh6 255 15 is be VBZ cord-001824-7c37elh6 255 16 not not RB cord-001824-7c37elh6 255 17 sensitive sensitive JJ cord-001824-7c37elh6 255 18 to to IN cord-001824-7c37elh6 255 19 the the DT cord-001824-7c37elh6 255 20 rate rate NN cord-001824-7c37elh6 255 21 of of IN cord-001824-7c37elh6 255 22 A a DT cord-001824-7c37elh6 255 23 - - HYPH cord-001824-7c37elh6 255 24 site site NN cord-001824-7c37elh6 255 25 selection selection NN cord-001824-7c37elh6 255 26 suggesting suggest VBG cord-001824-7c37elh6 255 27 that that IN cord-001824-7c37elh6 255 28 lack lack NN cord-001824-7c37elh6 255 29 of of IN cord-001824-7c37elh6 255 30 mcm mcm NNP cord-001824-7c37elh6 255 31 5 5 CD cord-001824-7c37elh6 255 32 s s NN cord-001824-7c37elh6 255 33 2 2 CD cord-001824-7c37elh6 256 1 U U NNP cord-001824-7c37elh6 256 2 does do VBZ cord-001824-7c37elh6 256 3 not not RB cord-001824-7c37elh6 256 4 cause cause VB cord-001824-7c37elh6 256 5 any any DT cord-001824-7c37elh6 256 6 P p NN cord-001824-7c37elh6 256 7 - - HYPH cord-001824-7c37elh6 256 8 site site NN cord-001824-7c37elh6 256 9 effect effect NN cord-001824-7c37elh6 256 10 and and CC cord-001824-7c37elh6 256 11 thus thus RB cord-001824-7c37elh6 256 12 an an DT cord-001824-7c37elh6 256 13 increased increase VBN cord-001824-7c37elh6 256 14 peptidyl peptidyl NN cord-001824-7c37elh6 256 15 - - HYPH cord-001824-7c37elh6 256 16 tRNA trna NN cord-001824-7c37elh6 256 17 slippage slippage NN cord-001824-7c37elh6 256 18 . . . cord-001824-7c37elh6 257 1 If if IN cord-001824-7c37elh6 257 2 the the DT cord-001824-7c37elh6 257 3 frameshifting frameshifte VBG cord-001824-7c37elh6 257 4 event event NN cord-001824-7c37elh6 257 5 occurring occur VBG cord-001824-7c37elh6 257 6 at at IN cord-001824-7c37elh6 257 7 the the DT cord-001824-7c37elh6 257 8 modified modify VBN cord-001824-7c37elh6 257 9 Ty1 ty1 NN cord-001824-7c37elh6 257 10 site site NN cord-001824-7c37elh6 257 11 ' ' `` cord-001824-7c37elh6 257 12 CUU CUU NNP cord-001824-7c37elh6 257 13 - - HYPH cord-001824-7c37elh6 257 14 AAA AAA NNP cord-001824-7c37elh6 257 15 - - HYPH cord-001824-7c37elh6 257 16 C C NNP cord-001824-7c37elh6 257 17 ' ' '' cord-001824-7c37elh6 257 18 was be VBD cord-001824-7c37elh6 257 19 caused cause VBN cord-001824-7c37elh6 257 20 by by IN cord-001824-7c37elh6 257 21 a a DT cord-001824-7c37elh6 257 22 slow slow JJ cord-001824-7c37elh6 257 23 entry entry NN cord-001824-7c37elh6 257 24 of of IN cord-001824-7c37elh6 257 25 the the DT cord-001824-7c37elh6 257 26 ternary ternary JJ cord-001824-7c37elh6 257 27 complex complex NN cord-001824-7c37elh6 257 28 containing contain VBG cord-001824-7c37elh6 257 29 the the DT cord-001824-7c37elh6 257 30 hypomodified hypomodifie VBN cord-001824-7c37elh6 257 31 tRNA tRNA NNP cord-001824-7c37elh6 257 32 Lys Lys NNP cord-001824-7c37elh6 257 33 mcm mcm NNP cord-001824-7c37elh6 257 34 5 5 CD cord-001824-7c37elh6 257 35 s s NN cord-001824-7c37elh6 257 36 2 2 CD cord-001824-7c37elh6 257 37 UUU UUU NNP cord-001824-7c37elh6 257 38 causing cause VBG cord-001824-7c37elh6 257 39 a a DT cord-001824-7c37elh6 257 40 peptidyl peptidyl NNP cord-001824-7c37elh6 257 41 - - HYPH cord-001824-7c37elh6 257 42 tRNA trna NN cord-001824-7c37elh6 257 43 Leu Leu NNP cord-001824-7c37elh6 257 44 UAG UAG NNP cord-001824-7c37elh6 257 45 slippage slippage NN cord-001824-7c37elh6 257 46 to to IN cord-001824-7c37elh6 257 47 +1 +1 XX cord-001824-7c37elh6 257 48 translational translational JJ cord-001824-7c37elh6 257 49 frame frame NN cord-001824-7c37elh6 257 50 , , , cord-001824-7c37elh6 258 1 an an DT cord-001824-7c37elh6 258 2 elevated elevated JJ cord-001824-7c37elh6 258 3 level level NN cord-001824-7c37elh6 258 4 of of IN cord-001824-7c37elh6 258 5 the the DT cord-001824-7c37elh6 258 6 hypomod hypomod NN cord-001824-7c37elh6 258 7 - - HYPH cord-001824-7c37elh6 258 8 ified ifie VBN cord-001824-7c37elh6 258 9 tRNA tRNA NNP cord-001824-7c37elh6 258 10 Lys Lys NNP cord-001824-7c37elh6 258 11 mcm mcm NNP cord-001824-7c37elh6 258 12 5 5 CD cord-001824-7c37elh6 258 13 s s NN cord-001824-7c37elh6 258 14 2 2 CD cord-001824-7c37elh6 258 15 UUU UUU NNP cord-001824-7c37elh6 258 16 should should MD cord-001824-7c37elh6 258 17 increase increase VB cord-001824-7c37elh6 258 18 the the DT cord-001824-7c37elh6 258 19 rate rate NN cord-001824-7c37elh6 258 20 of of IN cord-001824-7c37elh6 258 21 A a DT cord-001824-7c37elh6 258 22 - - HYPH cord-001824-7c37elh6 258 23 site site NN cord-001824-7c37elh6 258 24 selection selection NN cord-001824-7c37elh6 258 25 and and CC cord-001824-7c37elh6 258 26 thereby thereby RB cord-001824-7c37elh6 258 27 reducing reduce VBG cord-001824-7c37elh6 258 28 +1 +1 XX cord-001824-7c37elh6 258 29 frameshifting frameshifting NN cord-001824-7c37elh6 258 30 ( ( -LRB- cord-001824-7c37elh6 258 31 Figure figure NN cord-001824-7c37elh6 258 32 1B 1b CD cord-001824-7c37elh6 258 33 ) ) -RRB- cord-001824-7c37elh6 258 34 . . . cord-001824-7c37elh6 259 1 We -PRON- PRP cord-001824-7c37elh6 259 2 therefore therefore RB cord-001824-7c37elh6 259 3 cloned clone VBD cord-001824-7c37elh6 259 4 the the DT cord-001824-7c37elh6 259 5 tK(UUU)L tK(UUU)L NNP cord-001824-7c37elh6 259 6 gene gene NN cord-001824-7c37elh6 259 7 , , , cord-001824-7c37elh6 259 8 which which WDT cord-001824-7c37elh6 259 9 encodes encode VBZ cord-001824-7c37elh6 259 10 tRNA tRNA NNP cord-001824-7c37elh6 259 11 Lys Lys NNP cord-001824-7c37elh6 259 12 mcm mcm NNP cord-001824-7c37elh6 259 13 5 5 CD cord-001824-7c37elh6 259 14 s s NN cord-001824-7c37elh6 259 15 2 2 CD cord-001824-7c37elh6 259 16 UUU UUU NNP cord-001824-7c37elh6 259 17 into into IN cord-001824-7c37elh6 259 18 either either DT cord-001824-7c37elh6 259 19 plasmid plasmid NN cord-001824-7c37elh6 259 20 pMB38 pMB38 NNS cord-001824-7c37elh6 259 21 - - HYPH cord-001824-7c37elh6 259 22 9merWT 9merwt CD cord-001824-7c37elh6 259 23 ( ( -LRB- cord-001824-7c37elh6 259 24 test test NN cord-001824-7c37elh6 259 25 construct construct NN cord-001824-7c37elh6 259 26 , , , cord-001824-7c37elh6 259 27 containing contain VBG cord-001824-7c37elh6 259 28 the the DT cord-001824-7c37elh6 259 29 CUU CUU NNP cord-001824-7c37elh6 259 30 - - HYPH cord-001824-7c37elh6 259 31 AAA AAA NNP cord-001824-7c37elh6 259 32 - - HYPH cord-001824-7c37elh6 259 33 C c NN cord-001824-7c37elh6 259 34 frameshift frameshift NN cord-001824-7c37elh6 259 35 site site NN cord-001824-7c37elh6 259 36 ) ) -RRB- cord-001824-7c37elh6 259 37 and and CC cord-001824-7c37elh6 259 38 pMB38 pMB38 NNS cord-001824-7c37elh6 259 39 - - SYM cord-001824-7c37elh6 259 40 9merFF 9merff CD cord-001824-7c37elh6 260 1 ( ( -LRB- cord-001824-7c37elh6 260 2 corresponding correspond VBG cord-001824-7c37elh6 260 3 in in IN cord-001824-7c37elh6 260 4 - - HYPH cord-001824-7c37elh6 260 5 frame frame NN cord-001824-7c37elh6 260 6 control control NN cord-001824-7c37elh6 260 7 construct construct VB cord-001824-7c37elh6 260 8 , , , cord-001824-7c37elh6 260 9 Figure Figure NNP cord-001824-7c37elh6 260 10 4 4 CD cord-001824-7c37elh6 260 11 and and CC cord-001824-7c37elh6 260 12 Supplementary Supplementary NNP cord-001824-7c37elh6 260 13 Table Table NNP cord-001824-7c37elh6 260 14 S2 S2 NNP cord-001824-7c37elh6 260 15 ) ) -RRB- cord-001824-7c37elh6 260 16 . . . cord-001824-7c37elh6 261 1 Thus thus RB cord-001824-7c37elh6 261 2 , , , cord-001824-7c37elh6 261 3 the the DT cord-001824-7c37elh6 261 4 plasmids plasmid NNS cord-001824-7c37elh6 261 5 harbor harbor VBP cord-001824-7c37elh6 261 6 both both PDT cord-001824-7c37elh6 261 7 the the DT cord-001824-7c37elh6 261 8 tRNA tRNA NNP cord-001824-7c37elh6 261 9 gene gene NN cord-001824-7c37elh6 261 10 and and CC cord-001824-7c37elh6 261 11 the the DT cord-001824-7c37elh6 261 12 ␤ ␤ CD cord-001824-7c37elh6 261 13 galactosidase galactosidase NN cord-001824-7c37elh6 261 14 gene gene NN cord-001824-7c37elh6 261 15 with with IN cord-001824-7c37elh6 261 16 either either CC cord-001824-7c37elh6 261 17 a a DT cord-001824-7c37elh6 261 18 frameshift frameshift NN cord-001824-7c37elh6 261 19 site site NN cord-001824-7c37elh6 261 20 or or CC cord-001824-7c37elh6 261 21 an an DT cord-001824-7c37elh6 261 22 inframe inframe NN cord-001824-7c37elh6 261 23 control control NN cord-001824-7c37elh6 261 24 . . . cord-001824-7c37elh6 262 1 The the DT cord-001824-7c37elh6 262 2 plasmid plasmid NN cord-001824-7c37elh6 262 3 encoded encode VBD cord-001824-7c37elh6 262 4 tK(UUU)L tK(UUU)L NNP cord-001824-7c37elh6 262 5 gene gene NN cord-001824-7c37elh6 262 6 results result NNS cord-001824-7c37elh6 262 7 in in IN cord-001824-7c37elh6 262 8 overexpression overexpression NN cord-001824-7c37elh6 262 9 of of IN cord-001824-7c37elh6 262 10 tRNA tRNA NNP cord-001824-7c37elh6 262 11 Lys Lys NNP cord-001824-7c37elh6 262 12 mcm mcm NNP cord-001824-7c37elh6 262 13 5 5 CD cord-001824-7c37elh6 262 14 s s NN cord-001824-7c37elh6 262 15 2 2 CD cord-001824-7c37elh6 262 16 UUU UUU NNP cord-001824-7c37elh6 262 17 and and CC cord-001824-7c37elh6 262 18 concomitantly concomitantly RB cord-001824-7c37elh6 262 19 reduced reduce VBD cord-001824-7c37elh6 262 20 the the DT cord-001824-7c37elh6 262 21 levels level NNS cord-001824-7c37elh6 262 22 of of IN cord-001824-7c37elh6 262 23 +1 +1 NN cord-001824-7c37elh6 262 24 frameshifting frameshifte VBG cord-001824-7c37elh6 262 25 in in IN cord-001824-7c37elh6 262 26 the the DT cord-001824-7c37elh6 262 27 elp3 elp3 NNP cord-001824-7c37elh6 262 28 mutant mutant NN cord-001824-7c37elh6 262 29 from from IN cord-001824-7c37elh6 262 30 10-to 10-to CD cord-001824-7c37elh6 262 31 3-fold 3-fold CD cord-001824-7c37elh6 262 32 compared compare VBN cord-001824-7c37elh6 262 33 to to IN cord-001824-7c37elh6 262 34 wild wild JJ cord-001824-7c37elh6 262 35 type type NN cord-001824-7c37elh6 262 36 ( ( -LRB- cord-001824-7c37elh6 262 37 Table table NN cord-001824-7c37elh6 262 38 3 3 CD cord-001824-7c37elh6 262 39 ) ) -RRB- cord-001824-7c37elh6 262 40 . . . cord-001824-7c37elh6 263 1 This this DT cord-001824-7c37elh6 263 2 data datum NNS cord-001824-7c37elh6 263 3 strongly strongly RB cord-001824-7c37elh6 263 4 suggest suggest VBP cord-001824-7c37elh6 263 5 that that IN cord-001824-7c37elh6 263 6 the the DT cord-001824-7c37elh6 263 7 +1 +1 HYPH cord-001824-7c37elh6 263 8 frameshifting frameshifte VBG cord-001824-7c37elh6 263 9 event event NN cord-001824-7c37elh6 263 10 at at IN cord-001824-7c37elh6 263 11 ' ' `` cord-001824-7c37elh6 263 12 CUU CUU NNP cord-001824-7c37elh6 263 13 - - HYPH cord-001824-7c37elh6 263 14 AAA AAA NNP cord-001824-7c37elh6 263 15 - - HYPH cord-001824-7c37elh6 263 16 C C NNP cord-001824-7c37elh6 263 17 ' ' '' cord-001824-7c37elh6 263 18 Lys Lys NNP cord-001824-7c37elh6 263 19 codon codon NN cord-001824-7c37elh6 263 20 test test NN cord-001824-7c37elh6 263 21 construct construct NN cord-001824-7c37elh6 263 22 occurs occur VBZ cord-001824-7c37elh6 263 23 by by IN cord-001824-7c37elh6 263 24 peptidyl peptidyl NNP cord-001824-7c37elh6 263 25 - - HYPH cord-001824-7c37elh6 263 26 tRNA tRNA NNP cord-001824-7c37elh6 263 27 Leu Leu NNP cord-001824-7c37elh6 263 28 UAG UAG NNP cord-001824-7c37elh6 263 29 slippage slippage NN cord-001824-7c37elh6 263 30 due due IN cord-001824-7c37elh6 263 31 to to IN cord-001824-7c37elh6 263 32 an an DT cord-001824-7c37elh6 263 33 A a NN cord-001824-7c37elh6 263 34 - - HYPH cord-001824-7c37elh6 263 35 site site NN cord-001824-7c37elh6 263 36 effect effect NN cord-001824-7c37elh6 263 37 caused cause VBN cord-001824-7c37elh6 263 38 by by IN cord-001824-7c37elh6 263 39 a a DT cord-001824-7c37elh6 263 40 slow slow JJ cord-001824-7c37elh6 263 41 entry entry NN cord-001824-7c37elh6 263 42 of of IN cord-001824-7c37elh6 263 43 the the DT cord-001824-7c37elh6 263 44 hypomodified hypomodifie VBN cord-001824-7c37elh6 263 45 tRNA tRNA NNP cord-001824-7c37elh6 263 46 Lys Lys NNP cord-001824-7c37elh6 263 47 mcm mcm NNP cord-001824-7c37elh6 263 48 5 5 CD cord-001824-7c37elh6 263 49 s s NN cord-001824-7c37elh6 263 50 2 2 CD cord-001824-7c37elh6 263 51 UUU UUU NNP cord-001824-7c37elh6 263 52 . . . cord-001824-7c37elh6 264 1 As as IN cord-001824-7c37elh6 264 2 was be VBD cord-001824-7c37elh6 264 3 suggested suggest VBN cord-001824-7c37elh6 264 4 earlier early RBR cord-001824-7c37elh6 264 5 by by IN cord-001824-7c37elh6 264 6 us -PRON- PRP cord-001824-7c37elh6 264 7 ( ( -LRB- cord-001824-7c37elh6 264 8 34 34 CD cord-001824-7c37elh6 264 9 , , , cord-001824-7c37elh6 264 10 48 48 CD cord-001824-7c37elh6 264 11 ) ) -RRB- cord-001824-7c37elh6 264 12 and and CC cord-001824-7c37elh6 264 13 confirmed confirm VBN cord-001824-7c37elh6 264 14 by by IN cord-001824-7c37elh6 264 15 Rezgui Rezgui NNP cord-001824-7c37elh6 264 16 et et NNP cord-001824-7c37elh6 264 17 al al NNP cord-001824-7c37elh6 264 18 . . . cord-001824-7c37elh6 265 1 ( ( -LRB- cord-001824-7c37elh6 265 2 51 51 CD cord-001824-7c37elh6 265 3 ) ) -RRB- cord-001824-7c37elh6 265 4 , , , cord-001824-7c37elh6 265 5 the the DT cord-001824-7c37elh6 265 6 major major JJ cord-001824-7c37elh6 265 7 function function NN cord-001824-7c37elh6 265 8 of of IN cord-001824-7c37elh6 265 9 the the DT cord-001824-7c37elh6 265 10 mcm mcm NNP cord-001824-7c37elh6 265 11 5 5 CD cord-001824-7c37elh6 265 12 s s NN cord-001824-7c37elh6 265 13 2 2 CD cord-001824-7c37elh6 265 14 U U NNP cord-001824-7c37elh6 265 15 34 34 CD cord-001824-7c37elh6 265 16 nucleoside nucleoside NN cord-001824-7c37elh6 265 17 in in IN cord-001824-7c37elh6 265 18 Lys Lys NNP cord-001824-7c37elh6 265 19 - - HYPH cord-001824-7c37elh6 265 20 tRNA tRNA NNP cord-001824-7c37elh6 265 21 is be VBZ cord-001824-7c37elh6 265 22 to to TO cord-001824-7c37elh6 265 23 improve improve VB cord-001824-7c37elh6 265 24 the the DT cord-001824-7c37elh6 265 25 reading reading NN cord-001824-7c37elh6 265 26 of of IN cord-001824-7c37elh6 265 27 the the DT cord-001824-7c37elh6 265 28 cognate cognate JJ cord-001824-7c37elh6 265 29 codon codon NN cord-001824-7c37elh6 265 30 . . . cord-001824-7c37elh6 266 1 Thus thus RB cord-001824-7c37elh6 266 2 , , , cord-001824-7c37elh6 266 3 mcm mcm NNP cord-001824-7c37elh6 266 4 5 5 CD cord-001824-7c37elh6 266 5 s s NN cord-001824-7c37elh6 266 6 2 2 CD cord-001824-7c37elh6 266 7 U u NN cord-001824-7c37elh6 266 8 34 34 CD cord-001824-7c37elh6 266 9 deficiency deficiency NN cord-001824-7c37elh6 266 10 results result NNS cord-001824-7c37elh6 266 11 in in IN cord-001824-7c37elh6 266 12 slow slow JJ cord-001824-7c37elh6 266 13 decoding decoding NN cord-001824-7c37elh6 266 14 and and CC cord-001824-7c37elh6 266 15 reduced reduce VBN cord-001824-7c37elh6 266 16 translation translation NN cord-001824-7c37elh6 266 17 elongation elongation NN cord-001824-7c37elh6 266 18 rate rate NN cord-001824-7c37elh6 266 19 but but CC cord-001824-7c37elh6 266 20 also also RB cord-001824-7c37elh6 266 21 , , , cord-001824-7c37elh6 266 22 as as IN cord-001824-7c37elh6 266 23 shown show VBN cord-001824-7c37elh6 266 24 here here RB cord-001824-7c37elh6 266 25 , , , cord-001824-7c37elh6 266 26 induces induce VBZ cord-001824-7c37elh6 266 27 +1 +1 XX cord-001824-7c37elh6 266 28 frameshifting frameshifte VBG cord-001824-7c37elh6 266 29 by by IN cord-001824-7c37elh6 266 30 reducing reduce VBG cord-001824-7c37elh6 266 31 the the DT cord-001824-7c37elh6 266 32 rate rate NN cord-001824-7c37elh6 266 33 of of IN cord-001824-7c37elh6 266 34 A a DT cord-001824-7c37elh6 266 35 - - HYPH cord-001824-7c37elh6 266 36 site site NN cord-001824-7c37elh6 266 37 selection selection NN cord-001824-7c37elh6 266 38 . . . cord-001824-7c37elh6 267 1 Among among IN cord-001824-7c37elh6 267 2 the the DT cord-001824-7c37elh6 267 3 tRNA tRNA NNP cord-001824-7c37elh6 267 4 isoacceptors isoacceptor NNS cord-001824-7c37elh6 267 5 having have VBG cord-001824-7c37elh6 267 6 xm xm NNP cord-001824-7c37elh6 267 7 5 5 CD cord-001824-7c37elh6 267 8 U U NNP cord-001824-7c37elh6 267 9 34 34 CD cord-001824-7c37elh6 267 10 or or CC cord-001824-7c37elh6 267 11 xm xm NNP cord-001824-7c37elh6 267 12 5 5 CD cord-001824-7c37elh6 267 13 s s SYM cord-001824-7c37elh6 267 14 2 2 CD cord-001824-7c37elh6 267 15 U U NNP cord-001824-7c37elh6 267 16 34 34 CD cord-001824-7c37elh6 267 17 wobble wobble NN cord-001824-7c37elh6 267 18 uridine uridine JJ cord-001824-7c37elh6 267 19 nucleosides nucleoside NNS cord-001824-7c37elh6 267 20 , , , cord-001824-7c37elh6 267 21 only only RB cord-001824-7c37elh6 267 22 Lys Lys NNP cord-001824-7c37elh6 267 23 - - : cord-001824-7c37elh6 267 24 and and CC cord-001824-7c37elh6 267 25 Gln Gln NNP cord-001824-7c37elh6 267 26 - - HYPH cord-001824-7c37elh6 267 27 tRNAs tRNAs NNP cord-001824-7c37elh6 267 28 has have VBZ cord-001824-7c37elh6 267 29 been be VBN cord-001824-7c37elh6 267 30 investigated investigate VBN cord-001824-7c37elh6 267 31 for for IN cord-001824-7c37elh6 267 32 +1 +1 HYPH cord-001824-7c37elh6 267 33 frameshifting frameshifte VBG cord-001824-7c37elh6 267 34 in in IN cord-001824-7c37elh6 267 35 both both DT cord-001824-7c37elh6 267 36 bacteria bacteria NNS cord-001824-7c37elh6 267 37 and and CC cord-001824-7c37elh6 267 38 yeast yeast NN cord-001824-7c37elh6 267 39 . . . cord-001824-7c37elh6 268 1 The the DT cord-001824-7c37elh6 268 2 modified modify VBN cord-001824-7c37elh6 268 3 wobble wobble NN cord-001824-7c37elh6 268 4 nucleoside nucleoside RB cord-001824-7c37elh6 268 5 5-methoxycarbonylmethyl-2-thiouridine 5-methoxycarbonylmethyl-2-thiouridine CD cord-001824-7c37elh6 269 1 ( ( -LRB- cord-001824-7c37elh6 269 2 mcm mcm NNP cord-001824-7c37elh6 269 3 5 5 CD cord-001824-7c37elh6 269 4 s s NN cord-001824-7c37elh6 269 5 2 2 CD cord-001824-7c37elh6 269 6 U U NNP cord-001824-7c37elh6 269 7 34 34 CD cord-001824-7c37elh6 269 8 ) ) -RRB- cord-001824-7c37elh6 269 9 present present JJ cord-001824-7c37elh6 269 10 in in IN cord-001824-7c37elh6 269 11 yeast yeast NN cord-001824-7c37elh6 270 1 tRNAs trna NNS cord-001824-7c37elh6 270 2 specific specific JJ cord-001824-7c37elh6 270 3 for for IN cord-001824-7c37elh6 270 4 Gln Gln NNP cord-001824-7c37elh6 270 5 , , , cord-001824-7c37elh6 270 6 Lys Lys NNP cord-001824-7c37elh6 270 7 and and CC cord-001824-7c37elh6 270 8 Glu Glu NNP cord-001824-7c37elh6 270 9 has have VBZ cord-001824-7c37elh6 270 10 a a DT cord-001824-7c37elh6 270 11 chemically chemically RB cord-001824-7c37elh6 270 12 related relate VBN cord-001824-7c37elh6 270 13 form form NN cord-001824-7c37elh6 270 14 , , , cord-001824-7c37elh6 270 15 5-methylaminomethyl-2thiouridine 5-methylaminomethyl-2thiouridine CD cord-001824-7c37elh6 270 16 ( ( -LRB- cord-001824-7c37elh6 270 17 mnm mnm NNP cord-001824-7c37elh6 270 18 5 5 NNP cord-001824-7c37elh6 270 19 s s SYM cord-001824-7c37elh6 270 20 2 2 CD cord-001824-7c37elh6 270 21 U U NNP cord-001824-7c37elh6 270 22 34 34 CD cord-001824-7c37elh6 270 23 ) ) -RRB- cord-001824-7c37elh6 270 24 present present JJ cord-001824-7c37elh6 270 25 in in IN cord-001824-7c37elh6 270 26 the the DT cord-001824-7c37elh6 270 27 corresponding corresponding JJ cord-001824-7c37elh6 270 28 bacterial bacterial JJ cord-001824-7c37elh6 270 29 tRNAs trna NNS cord-001824-7c37elh6 270 30 . . . cord-001824-7c37elh6 271 1 In in IN cord-001824-7c37elh6 271 2 bacteria bacteria NNS cord-001824-7c37elh6 271 3 , , , cord-001824-7c37elh6 271 4 lack lack NN cord-001824-7c37elh6 271 5 of of IN cord-001824-7c37elh6 271 6 the the DT cord-001824-7c37elh6 271 7 mnm mnm NNP cord-001824-7c37elh6 271 8 5 5 CD cord-001824-7c37elh6 271 9 group group NN cord-001824-7c37elh6 271 10 in in IN cord-001824-7c37elh6 271 11 Gln Gln NNP cord-001824-7c37elh6 271 12 - - HYPH cord-001824-7c37elh6 271 13 tRNA trna NN cord-001824-7c37elh6 271 14 results result NNS cord-001824-7c37elh6 271 15 in in IN cord-001824-7c37elh6 271 16 increased increase VBN cord-001824-7c37elh6 271 17 +1 +1 NNS cord-001824-7c37elh6 271 18 frameshifting frameshifte VBG cord-001824-7c37elh6 271 19 at at IN cord-001824-7c37elh6 271 20 both both CC cord-001824-7c37elh6 271 21 cognate cognate JJ cord-001824-7c37elh6 271 22 ( ( -LRB- cord-001824-7c37elh6 271 23 CAA CAA NNP cord-001824-7c37elh6 271 24 ) ) -RRB- cord-001824-7c37elh6 271 25 and and CC cord-001824-7c37elh6 271 26 near near IN cord-001824-7c37elh6 271 27 cognate cognate NNP cord-001824-7c37elh6 271 28 ( ( -LRB- cord-001824-7c37elh6 271 29 CAG CAG NNP cord-001824-7c37elh6 271 30 ) ) -RRB- cord-001824-7c37elh6 271 31 codons codon NNS cord-001824-7c37elh6 271 32 , , , cord-001824-7c37elh6 271 33 whereas whereas IN cord-001824-7c37elh6 271 34 absence absence NN cord-001824-7c37elh6 271 35 of of IN cord-001824-7c37elh6 271 36 the the DT cord-001824-7c37elh6 271 37 s s NNP cord-001824-7c37elh6 271 38 2 2 CD cord-001824-7c37elh6 271 39 group group NN cord-001824-7c37elh6 271 40 results result NNS cord-001824-7c37elh6 271 41 in in IN cord-001824-7c37elh6 271 42 +1 +1 NN cord-001824-7c37elh6 271 43 frameshifting frameshifte VBG cord-001824-7c37elh6 271 44 only only RB cord-001824-7c37elh6 271 45 at at IN cord-001824-7c37elh6 271 46 the the DT cord-001824-7c37elh6 271 47 cognate cognate NN cord-001824-7c37elh6 271 48 ( ( -LRB- cord-001824-7c37elh6 271 49 CAA CAA NNP cord-001824-7c37elh6 271 50 ) ) -RRB- cord-001824-7c37elh6 271 51 codon codon NN cord-001824-7c37elh6 271 52 ( ( -LRB- cord-001824-7c37elh6 271 53 6 6 CD cord-001824-7c37elh6 271 54 ) ) -RRB- cord-001824-7c37elh6 271 55 . . . cord-001824-7c37elh6 272 1 In in IN cord-001824-7c37elh6 272 2 contrast contrast NN cord-001824-7c37elh6 272 3 , , , cord-001824-7c37elh6 272 4 lack lack NN cord-001824-7c37elh6 272 5 of of IN cord-001824-7c37elh6 272 6 mcm mcm NNP cord-001824-7c37elh6 272 7 5 5 CD cord-001824-7c37elh6 272 8 or or CC cord-001824-7c37elh6 272 9 s s NNS cord-001824-7c37elh6 272 10 2 2 CD cord-001824-7c37elh6 272 11 groups group NNS cord-001824-7c37elh6 272 12 in in IN cord-001824-7c37elh6 272 13 yeast yeast NN cord-001824-7c37elh6 272 14 Gln Gln NNP cord-001824-7c37elh6 272 15 - - HYPH cord-001824-7c37elh6 272 16 tRNA tRNA NNP cord-001824-7c37elh6 272 17 does do VBZ cord-001824-7c37elh6 272 18 not not RB cord-001824-7c37elh6 272 19 result result VB cord-001824-7c37elh6 272 20 in in IN cord-001824-7c37elh6 272 21 increased increase VBN cord-001824-7c37elh6 272 22 +1 +1 NNS cord-001824-7c37elh6 272 23 frameshifting frameshifte VBG cord-001824-7c37elh6 272 24 at at IN cord-001824-7c37elh6 272 25 either either CC cord-001824-7c37elh6 272 26 CAA CAA NNP cord-001824-7c37elh6 272 27 or or CC cord-001824-7c37elh6 272 28 CAG CAG NNP cord-001824-7c37elh6 272 29 codons codon NNS cord-001824-7c37elh6 272 30 . . . cord-001824-7c37elh6 273 1 Instead instead RB cord-001824-7c37elh6 273 2 , , , cord-001824-7c37elh6 273 3 absence absence NN cord-001824-7c37elh6 273 4 of of IN cord-001824-7c37elh6 273 5 the the DT cord-001824-7c37elh6 273 6 s s NNP cord-001824-7c37elh6 273 7 2 2 CD cord-001824-7c37elh6 273 8 group group NN cord-001824-7c37elh6 273 9 results result NNS cord-001824-7c37elh6 273 10 in in IN cord-001824-7c37elh6 273 11 reduced reduce VBN cord-001824-7c37elh6 273 12 +1 +1 NNS cord-001824-7c37elh6 273 13 frameshifting frameshifte VBG cord-001824-7c37elh6 273 14 at at IN cord-001824-7c37elh6 273 15 the the DT cord-001824-7c37elh6 273 16 CAG CAG NNP cord-001824-7c37elh6 273 17 codon codon NN cord-001824-7c37elh6 273 18 . . . cord-001824-7c37elh6 274 1 In in IN cord-001824-7c37elh6 274 2 bacteria bacteria NNS cord-001824-7c37elh6 274 3 , , , cord-001824-7c37elh6 274 4 lack lack NN cord-001824-7c37elh6 274 5 of of IN cord-001824-7c37elh6 274 6 mnm mnm NNP cord-001824-7c37elh6 274 7 5 5 CD cord-001824-7c37elh6 274 8 or or CC cord-001824-7c37elh6 274 9 s s NNS cord-001824-7c37elh6 274 10 2 2 CD cord-001824-7c37elh6 274 11 groups group NNS cord-001824-7c37elh6 274 12 in in IN cord-001824-7c37elh6 274 13 Lys Lys NNP cord-001824-7c37elh6 274 14 - - HYPH cord-001824-7c37elh6 274 15 tRNA tRNA NNP cord-001824-7c37elh6 274 16 cause cause NN cord-001824-7c37elh6 274 17 increased increase VBN cord-001824-7c37elh6 274 18 +1 +1 NNS cord-001824-7c37elh6 274 19 frameshifting frameshifte VBG cord-001824-7c37elh6 274 20 at at IN cord-001824-7c37elh6 274 21 both both CC cord-001824-7c37elh6 274 22 cognate cognate JJ cord-001824-7c37elh6 274 23 ( ( -LRB- cord-001824-7c37elh6 274 24 AAA AAA NNP cord-001824-7c37elh6 274 25 ) ) -RRB- cord-001824-7c37elh6 274 26 and and CC cord-001824-7c37elh6 275 1 near near IN cord-001824-7c37elh6 275 2 cognate cognate NNP cord-001824-7c37elh6 275 3 ( ( -LRB- cord-001824-7c37elh6 275 4 AAG AAG NNP cord-001824-7c37elh6 275 5 ) ) -RRB- cord-001824-7c37elh6 275 6 codons codon NNS cord-001824-7c37elh6 275 7 by by IN cord-001824-7c37elh6 275 8 A A NNP cord-001824-7c37elh6 275 9 - - : cord-001824-7c37elh6 275 10 and and CC cord-001824-7c37elh6 275 11 P p NN cord-001824-7c37elh6 275 12 - - HYPH cord-001824-7c37elh6 275 13 site site NN cord-001824-7c37elh6 275 14 effects effect NNS cord-001824-7c37elh6 275 15 ( ( -LRB- cord-001824-7c37elh6 275 16 6 6 CD cord-001824-7c37elh6 275 17 ) ) -RRB- cord-001824-7c37elh6 275 18 . . . cord-001824-7c37elh6 276 1 In in IN cord-001824-7c37elh6 276 2 yeast yeast NN cord-001824-7c37elh6 276 3 , , , cord-001824-7c37elh6 276 4 we -PRON- PRP cord-001824-7c37elh6 276 5 also also RB cord-001824-7c37elh6 276 6 observed observe VBD cord-001824-7c37elh6 276 7 an an DT cord-001824-7c37elh6 276 8 increased increase VBN cord-001824-7c37elh6 276 9 +1 +1 NNS cord-001824-7c37elh6 276 10 frameshifting frameshifting NN cord-001824-7c37elh6 276 11 due due IN cord-001824-7c37elh6 276 12 to to IN cord-001824-7c37elh6 276 13 lack lack NN cord-001824-7c37elh6 276 14 of of IN cord-001824-7c37elh6 276 15 mcm mcm NNP cord-001824-7c37elh6 276 16 5 5 CD cord-001824-7c37elh6 276 17 or or CC cord-001824-7c37elh6 276 18 s s NNS cord-001824-7c37elh6 276 19 2 2 CD cord-001824-7c37elh6 276 20 groups group NNS cord-001824-7c37elh6 276 21 of of IN cord-001824-7c37elh6 276 22 Lys Lys NNP cord-001824-7c37elh6 276 23 - - HYPH cord-001824-7c37elh6 276 24 tRNA tRNA NNP cord-001824-7c37elh6 276 25 at at IN cord-001824-7c37elh6 276 26 AAA AAA NNP cord-001824-7c37elh6 276 27 and and CC cord-001824-7c37elh6 276 28 AAG AAG NNP cord-001824-7c37elh6 276 29 codons codon NNS cord-001824-7c37elh6 276 30 . . . cord-001824-7c37elh6 277 1 However however RB cord-001824-7c37elh6 277 2 , , , cord-001824-7c37elh6 277 3 we -PRON- PRP cord-001824-7c37elh6 277 4 show show VBP cord-001824-7c37elh6 277 5 that that IN cord-001824-7c37elh6 277 6 +1 +1 NFP cord-001824-7c37elh6 277 7 frameshifting frameshifte VBG cord-001824-7c37elh6 277 8 at at IN cord-001824-7c37elh6 277 9 the the DT cord-001824-7c37elh6 277 10 cognate cognate JJ cord-001824-7c37elh6 277 11 ( ( -LRB- cord-001824-7c37elh6 277 12 AAA AAA NNP cord-001824-7c37elh6 277 13 ) ) -RRB- cord-001824-7c37elh6 277 14 codon codon NN cord-001824-7c37elh6 277 15 is be VBZ cord-001824-7c37elh6 277 16 induced induce VBN cord-001824-7c37elh6 277 17 by by IN cord-001824-7c37elh6 277 18 an an DT cord-001824-7c37elh6 277 19 A A NNP cord-001824-7c37elh6 277 20 - - HYPH cord-001824-7c37elh6 277 21 site site NN cord-001824-7c37elh6 277 22 effect effect NN cord-001824-7c37elh6 277 23 , , , cord-001824-7c37elh6 277 24 not not RB cord-001824-7c37elh6 277 25 a a DT cord-001824-7c37elh6 277 26 P p NN cord-001824-7c37elh6 277 27 - - HYPH cord-001824-7c37elh6 277 28 site site NN cord-001824-7c37elh6 277 29 effect effect NN cord-001824-7c37elh6 277 30 . . . cord-001824-7c37elh6 278 1 It -PRON- PRP cord-001824-7c37elh6 278 2 has have VBZ cord-001824-7c37elh6 278 3 been be VBN cord-001824-7c37elh6 278 4 shown show VBN cord-001824-7c37elh6 278 5 that that DT cord-001824-7c37elh6 278 6 presence presence NN cord-001824-7c37elh6 278 7 of of IN cord-001824-7c37elh6 278 8 modified modify VBN cord-001824-7c37elh6 278 9 nucleosides nucleoside NNS cord-001824-7c37elh6 278 10 in in IN cord-001824-7c37elh6 278 11 tRNAs trna NNS cord-001824-7c37elh6 278 12 are be VBP cord-001824-7c37elh6 278 13 required require VBN cord-001824-7c37elh6 278 14 for for IN cord-001824-7c37elh6 278 15 tuning tune VBG cord-001824-7c37elh6 278 16 the the DT cord-001824-7c37elh6 278 17 decoding decode VBG cord-001824-7c37elh6 278 18 activity activity NN cord-001824-7c37elh6 278 19 in in IN cord-001824-7c37elh6 278 20 order order NN cord-001824-7c37elh6 278 21 to to TO cord-001824-7c37elh6 278 22 maintain maintain VB cord-001824-7c37elh6 278 23 uniformity uniformity NN cord-001824-7c37elh6 278 24 in in IN cord-001824-7c37elh6 278 25 translation translation NN cord-001824-7c37elh6 278 26 ( ( -LRB- cord-001824-7c37elh6 278 27 49 49 CD cord-001824-7c37elh6 278 28 ) ) -RRB- cord-001824-7c37elh6 278 29 . . . cord-001824-7c37elh6 279 1 An an DT cord-001824-7c37elh6 279 2 in in IN cord-001824-7c37elh6 279 3 vitro vitro FW cord-001824-7c37elh6 279 4 study study NN cord-001824-7c37elh6 279 5 in in IN cord-001824-7c37elh6 279 6 yeast yeast NN cord-001824-7c37elh6 279 7 showed show VBD cord-001824-7c37elh6 279 8 that that IN cord-001824-7c37elh6 279 9 presence presence NN cord-001824-7c37elh6 279 10 of of IN cord-001824-7c37elh6 279 11 the the DT cord-001824-7c37elh6 279 12 mcm mcm NNP cord-001824-7c37elh6 279 13 5 5 CD cord-001824-7c37elh6 279 14 and and CC cord-001824-7c37elh6 279 15 s s NNS cord-001824-7c37elh6 279 16 2 2 CD cord-001824-7c37elh6 279 17 groups group NNS cord-001824-7c37elh6 279 18 of of IN cord-001824-7c37elh6 279 19 Lys Lys NNP cord-001824-7c37elh6 279 20 - - HYPH cord-001824-7c37elh6 279 21 tRNA tRNA NNP cord-001824-7c37elh6 279 22 are be VBP cord-001824-7c37elh6 279 23 required require VBN cord-001824-7c37elh6 279 24 for for IN cord-001824-7c37elh6 279 25 efficient efficient JJ cord-001824-7c37elh6 279 26 A a DT cord-001824-7c37elh6 279 27 - - HYPH cord-001824-7c37elh6 279 28 site site NN cord-001824-7c37elh6 279 29 binding binding NN cord-001824-7c37elh6 279 30 ( ( -LRB- cord-001824-7c37elh6 279 31 51 51 CD cord-001824-7c37elh6 279 32 ) ) -RRB- cord-001824-7c37elh6 279 33 . . . cord-001824-7c37elh6 280 1 Consistent consistent JJ cord-001824-7c37elh6 280 2 with with IN cord-001824-7c37elh6 280 3 these these DT cord-001824-7c37elh6 280 4 observations observation NNS cord-001824-7c37elh6 280 5 , , , cord-001824-7c37elh6 280 6 our -PRON- PRP$ cord-001824-7c37elh6 280 7 in in IN cord-001824-7c37elh6 280 8 vivo vivo NNP cord-001824-7c37elh6 280 9 studies study NNS cord-001824-7c37elh6 280 10 show show VBP cord-001824-7c37elh6 280 11 that that IN cord-001824-7c37elh6 280 12 presence presence NN cord-001824-7c37elh6 280 13 of of IN cord-001824-7c37elh6 280 14 the the DT cord-001824-7c37elh6 280 15 mcm mcm NNP cord-001824-7c37elh6 280 16 5 5 CD cord-001824-7c37elh6 280 17 group group NN cord-001824-7c37elh6 280 18 of of IN cord-001824-7c37elh6 280 19 Lys Lys NNP cord-001824-7c37elh6 280 20 - - HYPH cord-001824-7c37elh6 280 21 tRNA tRNA NNP cord-001824-7c37elh6 280 22 promotes promote VBZ cord-001824-7c37elh6 280 23 its -PRON- PRP$ cord-001824-7c37elh6 280 24 entry entry NN cord-001824-7c37elh6 280 25 to to IN cord-001824-7c37elh6 280 26 ribosomal ribosomal JJ cord-001824-7c37elh6 280 27 A A NNP cord-001824-7c37elh6 280 28 - - HYPH cord-001824-7c37elh6 280 29 site site NN cord-001824-7c37elh6 280 30 and and CC cord-001824-7c37elh6 280 31 thereby thereby RB cord-001824-7c37elh6 280 32 avoids avoid VBZ cord-001824-7c37elh6 280 33 +1 +1 HYPH cord-001824-7c37elh6 280 34 frameshift frameshift NN cord-001824-7c37elh6 280 35 errors error NNS cord-001824-7c37elh6 280 36 . . . cord-001824-7c37elh6 281 1 Thus thus RB cord-001824-7c37elh6 281 2 , , , cord-001824-7c37elh6 281 3 wobble wobble VB cord-001824-7c37elh6 281 4 uridine uridine JJ cord-001824-7c37elh6 281 5 modifications modification NNS cord-001824-7c37elh6 281 6 are be VBP cord-001824-7c37elh6 281 7 required require VBN cord-001824-7c37elh6 281 8 to to TO cord-001824-7c37elh6 281 9 optimize optimize VB cord-001824-7c37elh6 281 10 the the DT cord-001824-7c37elh6 281 11 function function NN cord-001824-7c37elh6 281 12 of of IN cord-001824-7c37elh6 281 13 tRNAs trna NNS cord-001824-7c37elh6 281 14 and and CC cord-001824-7c37elh6 281 15 thereby thereby RB cord-001824-7c37elh6 281 16 promote promote VB cord-001824-7c37elh6 281 17 a a DT cord-001824-7c37elh6 281 18 proper proper JJ cord-001824-7c37elh6 281 19 reading reading NN cord-001824-7c37elh6 281 20 frame frame NN cord-001824-7c37elh6 281 21 maintenance maintenance NN cord-001824-7c37elh6 281 22 . . . cord-001824-7c37elh6 282 1 Supplementary Supplementary NNP cord-001824-7c37elh6 282 2 Data Data NNP cord-001824-7c37elh6 282 3 are be VBP cord-001824-7c37elh6 282 4 available available JJ cord-001824-7c37elh6 282 5 at at IN cord-001824-7c37elh6 282 6 NAR NAR NNP cord-001824-7c37elh6 282 7 Online Online NNP cord-001824-7c37elh6 282 8 . . . cord-001824-7c37elh6 283 1 Translational translational JJ cord-001824-7c37elh6 283 2 accuracy accuracy NN cord-001824-7c37elh6 283 3 and and CC cord-001824-7c37elh6 283 4 the the DT cord-001824-7c37elh6 283 5 fitness fitness NN cord-001824-7c37elh6 283 6 of of IN cord-001824-7c37elh6 283 7 bacteria bacteria NNS cord-001824-7c37elh6 283 8 Errors error NNS cord-001824-7c37elh6 283 9 and and CC cord-001824-7c37elh6 283 10 alternatives alternative NNS cord-001824-7c37elh6 283 11 in in IN cord-001824-7c37elh6 283 12 reading read VBG cord-001824-7c37elh6 283 13 the the DT cord-001824-7c37elh6 283 14 universal universal JJ cord-001824-7c37elh6 283 15 genetic genetic JJ cord-001824-7c37elh6 283 16 code code NN cord-001824-7c37elh6 283 17 A a DT cord-001824-7c37elh6 283 18 gripping grip VBG cord-001824-7c37elh6 283 19 tale tale NN cord-001824-7c37elh6 283 20 of of IN cord-001824-7c37elh6 283 21 ribosomal ribosomal JJ cord-001824-7c37elh6 283 22 frameshifting frameshifting NN cord-001824-7c37elh6 283 23 : : : cord-001824-7c37elh6 283 24 extragenic extragenic NNP cord-001824-7c37elh6 283 25 suppressors suppressor NNS cord-001824-7c37elh6 283 26 of of IN cord-001824-7c37elh6 283 27 frameshift frameshift NN cord-001824-7c37elh6 283 28 mutations mutation NNS cord-001824-7c37elh6 283 29 spotlight spotlight NN cord-001824-7c37elh6 283 30 P p NN cord-001824-7c37elh6 283 31 - - HYPH cord-001824-7c37elh6 283 32 site site NN cord-001824-7c37elh6 283 33 realignment realignment NN cord-001824-7c37elh6 283 34 . . . cord-001824-7c37elh6 284 1 Microbiol Microbiol NNP cord-001824-7c37elh6 284 2 Transfer Transfer NNP cord-001824-7c37elh6 284 3 RNA RNA NNP cord-001824-7c37elh6 284 4 Modification modification NN cord-001824-7c37elh6 284 5 : : : cord-001824-7c37elh6 284 6 Presence Presence NNP cord-001824-7c37elh6 284 7 , , , cord-001824-7c37elh6 284 8 Synthesis Synthesis NNP cord-001824-7c37elh6 284 9 , , , cord-001824-7c37elh6 284 10 and and CC cord-001824-7c37elh6 284 11 Function Function NNP cord-001824-7c37elh6 284 12 Prevention Prevention NNP cord-001824-7c37elh6 284 13 of of IN cord-001824-7c37elh6 284 14 translational translational JJ cord-001824-7c37elh6 284 15 frameshifting frameshifting NN cord-001824-7c37elh6 284 16 by by IN cord-001824-7c37elh6 284 17 the the DT cord-001824-7c37elh6 284 18 modified modify VBN cord-001824-7c37elh6 284 19 nucleoside nucleoside NN cord-001824-7c37elh6 284 20 1-methylguanosine 1-methylguanosine CD cord-001824-7c37elh6 285 1 Improvement improvement NN cord-001824-7c37elh6 285 2 of of IN cord-001824-7c37elh6 285 3 reading read VBG cord-001824-7c37elh6 285 4 frame frame NN cord-001824-7c37elh6 285 5 maintenance maintenance NN cord-001824-7c37elh6 285 6 is be VBZ cord-001824-7c37elh6 285 7 a a DT cord-001824-7c37elh6 285 8 common common JJ cord-001824-7c37elh6 285 9 function function NN cord-001824-7c37elh6 285 10 for for IN cord-001824-7c37elh6 285 11 several several JJ cord-001824-7c37elh6 285 12 tRNA tRNA NNP cord-001824-7c37elh6 285 13 modifications modification NNS cord-001824-7c37elh6 285 14 Transfer Transfer NNP cord-001824-7c37elh6 285 15 RNA RNA NNP cord-001824-7c37elh6 285 16 modification modification NN cord-001824-7c37elh6 285 17 status status NN cord-001824-7c37elh6 285 18 influences influence NNS cord-001824-7c37elh6 285 19 retroviral retroviral VBP cord-001824-7c37elh6 285 20 ribosomal ribosomal JJ cord-001824-7c37elh6 285 21 frameshifting frameshifte VBG cord-001824-7c37elh6 285 22 ) ) -RRB- cord-001824-7c37elh6 285 23 1-Methylguanosine 1-methylguanosine CD cord-001824-7c37elh6 285 24 in in IN cord-001824-7c37elh6 285 25 place place NN cord-001824-7c37elh6 285 26 of of IN cord-001824-7c37elh6 285 27 Y Y NNP cord-001824-7c37elh6 285 28 base base NN cord-001824-7c37elh6 285 29 at at IN cord-001824-7c37elh6 285 30 position position NN cord-001824-7c37elh6 285 31 37 37 CD cord-001824-7c37elh6 285 32 in in IN cord-001824-7c37elh6 285 33 phenylalanine phenylalanine NN cord-001824-7c37elh6 285 34 tRNA tRNA NNP cord-001824-7c37elh6 285 35 is be VBZ cord-001824-7c37elh6 285 36 responsible responsible JJ cord-001824-7c37elh6 285 37 for for IN cord-001824-7c37elh6 285 38 its -PRON- PRP$ cord-001824-7c37elh6 285 39 shiftiness shiftiness NN cord-001824-7c37elh6 285 40 in in IN cord-001824-7c37elh6 285 41 retroviral retroviral JJ cord-001824-7c37elh6 285 42 ribosomal ribosomal JJ cord-001824-7c37elh6 285 43 frameshifting frameshifte VBG cord-001824-7c37elh6 285 44 Role role NN cord-001824-7c37elh6 285 45 of of IN cord-001824-7c37elh6 285 46 a a DT cord-001824-7c37elh6 285 47 tRNA trna NN cord-001824-7c37elh6 285 48 base base NN cord-001824-7c37elh6 285 49 modification modification NN cord-001824-7c37elh6 285 50 and and CC cord-001824-7c37elh6 285 51 its -PRON- PRP$ cord-001824-7c37elh6 285 52 precursors precursor NNS cord-001824-7c37elh6 285 53 in in IN cord-001824-7c37elh6 285 54 frameshifting frameshifte VBG cord-001824-7c37elh6 285 55 in in IN cord-001824-7c37elh6 285 56 eukaryotes eukaryote NNS cord-001824-7c37elh6 285 57 Lack lack NN cord-001824-7c37elh6 285 58 of of IN cord-001824-7c37elh6 285 59 pseudouridine pseudouridine NN cord-001824-7c37elh6 285 60 38/39 38/39 CD cord-001824-7c37elh6 285 61 in in IN cord-001824-7c37elh6 285 62 the the DT cord-001824-7c37elh6 285 63 anticodon anticodon NN cord-001824-7c37elh6 285 64 arm arm NN cord-001824-7c37elh6 285 65 of of IN cord-001824-7c37elh6 285 66 yeast yeast NN cord-001824-7c37elh6 285 67 cytoplasmic cytoplasmic JJ cord-001824-7c37elh6 285 68 tRNA tRNA NNP cord-001824-7c37elh6 285 69 decreases decrease VBZ cord-001824-7c37elh6 285 70 in in IN cord-001824-7c37elh6 285 71 vivo vivo NN cord-001824-7c37elh6 285 72 recoding recode VBG cord-001824-7c37elh6 285 73 efficiency efficiency NN cord-001824-7c37elh6 286 1 The the DT cord-001824-7c37elh6 286 2 Sua5 Sua5 NNP cord-001824-7c37elh6 286 3 protein protein NN cord-001824-7c37elh6 286 4 is be VBZ cord-001824-7c37elh6 286 5 essential essential JJ cord-001824-7c37elh6 286 6 for for IN cord-001824-7c37elh6 286 7 normal normal JJ cord-001824-7c37elh6 286 8 translational translational JJ cord-001824-7c37elh6 286 9 regulation regulation NN cord-001824-7c37elh6 286 10 in in IN cord-001824-7c37elh6 286 11 yeast yeast NN cord-001824-7c37elh6 286 12 A a DT cord-001824-7c37elh6 286 13 role role NN cord-001824-7c37elh6 286 14 for for IN cord-001824-7c37elh6 286 15 the the DT cord-001824-7c37elh6 286 16 universal universal JJ cord-001824-7c37elh6 286 17 Kae1 Kae1 NNP cord-001824-7c37elh6 286 18 / / SYM cord-001824-7c37elh6 286 19 Qri7 Qri7 NNP cord-001824-7c37elh6 286 20 / / SYM cord-001824-7c37elh6 286 21 YgjD YgjD NNP cord-001824-7c37elh6 286 22 ( ( -LRB- cord-001824-7c37elh6 286 23 COG0533 COG0533 NNP cord-001824-7c37elh6 286 24 ) ) -RRB- cord-001824-7c37elh6 286 25 family family NN cord-001824-7c37elh6 286 26 in in IN cord-001824-7c37elh6 286 27 tRNA tRNA NNP cord-001824-7c37elh6 287 1 modification modification NN cord-001824-7c37elh6 287 2 A a DT cord-001824-7c37elh6 287 3 cyclic cyclic JJ cord-001824-7c37elh6 287 4 form form NN cord-001824-7c37elh6 287 5 of of IN cord-001824-7c37elh6 287 6 N6-threonylcarbamoyladenosine N6-threonylcarbamoyladenosine NNP cord-001824-7c37elh6 287 7 as as IN cord-001824-7c37elh6 287 8 a a DT cord-001824-7c37elh6 287 9 widely widely RB cord-001824-7c37elh6 287 10 distributed distribute VBN cord-001824-7c37elh6 287 11 tRNA tRNA NNP cord-001824-7c37elh6 287 12 hypermodification hypermodification NN cord-001824-7c37elh6 287 13 Expression expression NN cord-001824-7c37elh6 287 14 of of IN cord-001824-7c37elh6 287 15 a a DT cord-001824-7c37elh6 287 16 coronavirus coronavirus NN cord-001824-7c37elh6 287 17 ribosomal ribosomal JJ cord-001824-7c37elh6 287 18 frameshift frameshift NN cord-001824-7c37elh6 287 19 signal signal NN cord-001824-7c37elh6 287 20 in in IN cord-001824-7c37elh6 287 21 Escherichia Escherichia NNP cord-001824-7c37elh6 287 22 coli coli NNS cord-001824-7c37elh6 287 23 : : : cord-001824-7c37elh6 287 24 influence influence NN cord-001824-7c37elh6 287 25 of of IN cord-001824-7c37elh6 287 26 tRNA tRNA NNP cord-001824-7c37elh6 287 27 anticodon anticodon NN cord-001824-7c37elh6 287 28 modification modification NN cord-001824-7c37elh6 287 29 on on IN cord-001824-7c37elh6 287 30 frameshifting frameshifte VBG cord-001824-7c37elh6 287 31 Programmed program VBN cord-001824-7c37elh6 287 32 translational translational JJ cord-001824-7c37elh6 288 1 -1 -1 . cord-001824-7c37elh6 289 1 frameshifting frameshifte VBG cord-001824-7c37elh6 289 2 on on IN cord-001824-7c37elh6 289 3 hexanucleotide hexanucleotide JJ cord-001824-7c37elh6 289 4 motifs motif NNS cord-001824-7c37elh6 289 5 and and CC cord-001824-7c37elh6 289 6 the the DT cord-001824-7c37elh6 289 7 wobble wobble NN cord-001824-7c37elh6 289 8 properties property NNS cord-001824-7c37elh6 289 9 of of IN cord-001824-7c37elh6 289 10 tRNAs tRNAs NNPS cord-001824-7c37elh6 289 11 Transfer Transfer NNP cord-001824-7c37elh6 289 12 RNA RNA NNP cord-001824-7c37elh6 289 13 modifications modification NNS cord-001824-7c37elh6 289 14 that that WDT cord-001824-7c37elh6 289 15 alter alter VBP cord-001824-7c37elh6 289 16 +1 +1 NN cord-001824-7c37elh6 289 17 frameshifting frameshifte VBG cord-001824-7c37elh6 289 18 in in IN cord-001824-7c37elh6 289 19 general general JJ cord-001824-7c37elh6 289 20 fail fail VBP cord-001824-7c37elh6 289 21 to to TO cord-001824-7c37elh6 289 22 affect affect VB cord-001824-7c37elh6 289 23 -1 -1 . cord-001824-7c37elh6 290 1 frameshifting frameshifte VBG cord-001824-7c37elh6 290 2 Competing compete VBG cord-001824-7c37elh6 290 3 pathways pathway NNS cord-001824-7c37elh6 290 4 control control VBP cord-001824-7c37elh6 290 5 host host NN cord-001824-7c37elh6 290 6 resistance resistance NN cord-001824-7c37elh6 290 7 to to IN cord-001824-7c37elh6 290 8 virus virus NN cord-001824-7c37elh6 290 9 via via IN cord-001824-7c37elh6 290 10 tRNA trna NN cord-001824-7c37elh6 290 11 modification modification NN cord-001824-7c37elh6 290 12 and and CC cord-001824-7c37elh6 290 13 programmed program VBD cord-001824-7c37elh6 290 14 ribosomal ribosomal JJ cord-001824-7c37elh6 290 15 frameshifting frameshifte VBG cord-001824-7c37elh6 290 16 Programmed program VBN cord-001824-7c37elh6 290 17 translational translational JJ cord-001824-7c37elh6 291 1 frameshifting frameshifte VBG cord-001824-7c37elh6 291 2 Programmed program VBD cord-001824-7c37elh6 291 3 translational translational JJ cord-001824-7c37elh6 291 4 frameshifting frameshifting NNP cord-001824-7c37elh6 291 5 Transfer Transfer NNP cord-001824-7c37elh6 291 6 RNA RNA NNP cord-001824-7c37elh6 291 7 modification modification NN cord-001824-7c37elh6 291 8 : : : cord-001824-7c37elh6 291 9 influence influence NN cord-001824-7c37elh6 291 10 on on IN cord-001824-7c37elh6 291 11 translational translational JJ cord-001824-7c37elh6 291 12 frameshifting frameshifting NN cord-001824-7c37elh6 291 13 and and CC cord-001824-7c37elh6 291 14 metabolism metabolism NN cord-001824-7c37elh6 292 1 How how WRB cord-001824-7c37elh6 292 2 translational translational JJ cord-001824-7c37elh6 292 3 accuracy accuracy NN cord-001824-7c37elh6 292 4 influences influence NNS cord-001824-7c37elh6 292 5 reading read VBG cord-001824-7c37elh6 292 6 frame frame NN cord-001824-7c37elh6 292 7 maintenance maintenance NN cord-001824-7c37elh6 293 1 The the DT cord-001824-7c37elh6 293 2 unbearable unbearable JJ cord-001824-7c37elh6 293 3 lightness lightness NN cord-001824-7c37elh6 293 4 of of IN cord-001824-7c37elh6 293 5 peptidyl peptidyl NN cord-001824-7c37elh6 293 6 - - HYPH cord-001824-7c37elh6 293 7 tRNA tRNA NNP cord-001824-7c37elh6 294 1 The the DT cord-001824-7c37elh6 294 2 ribosomal ribosomal JJ cord-001824-7c37elh6 294 3 grip grip NN cord-001824-7c37elh6 294 4 of of IN cord-001824-7c37elh6 294 5 the the DT cord-001824-7c37elh6 294 6 peptidyl peptidyl NNP cord-001824-7c37elh6 294 7 - - HYPH cord-001824-7c37elh6 294 8 tRNA tRNA NNP cord-001824-7c37elh6 294 9 is be VBZ cord-001824-7c37elh6 294 10 critical critical JJ cord-001824-7c37elh6 294 11 for for IN cord-001824-7c37elh6 294 12 reading read VBG cord-001824-7c37elh6 294 13 frame frame NN cord-001824-7c37elh6 294 14 maintenance maintenance NN cord-001824-7c37elh6 295 1 The the DT cord-001824-7c37elh6 295 2 phenotype phenotype NN cord-001824-7c37elh6 295 3 of of IN cord-001824-7c37elh6 295 4 many many JJ cord-001824-7c37elh6 295 5 independently independently RB cord-001824-7c37elh6 295 6 isolated isolate VBN cord-001824-7c37elh6 295 7 +1 +1 HYPH cord-001824-7c37elh6 295 8 frameshift frameshift NN cord-001824-7c37elh6 295 9 suppressor suppressor NN cord-001824-7c37elh6 295 10 mutants mutant NNS cord-001824-7c37elh6 295 11 supports support VBZ cord-001824-7c37elh6 295 12 a a DT cord-001824-7c37elh6 295 13 pivotal pivotal JJ cord-001824-7c37elh6 295 14 role role NN cord-001824-7c37elh6 295 15 of of IN cord-001824-7c37elh6 295 16 the the DT cord-001824-7c37elh6 295 17 P p NN cord-001824-7c37elh6 295 18 - - HYPH cord-001824-7c37elh6 295 19 site site NN cord-001824-7c37elh6 295 20 in in IN cord-001824-7c37elh6 295 21 reading read VBG cord-001824-7c37elh6 295 22 frame frame NN cord-001824-7c37elh6 295 23 maintenance maintenance NN cord-001824-7c37elh6 295 24 Presence Presence NNP cord-001824-7c37elh6 295 25 and and CC cord-001824-7c37elh6 295 26 coding code VBG cord-001824-7c37elh6 295 27 properties property NNS cord-001824-7c37elh6 295 28 of of IN cord-001824-7c37elh6 295 29 2 2 CD cord-001824-7c37elh6 295 30 -O -o CD cord-001824-7c37elh6 295 31 - - : cord-001824-7c37elh6 295 32 methyl-5-carbamoylmethyluridine methyl-5-carbamoylmethyluridine NNP cord-001824-7c37elh6 295 33 ( ( -LRB- cord-001824-7c37elh6 295 34 ncm5Um ncm5Um NNP cord-001824-7c37elh6 295 35 ) ) -RRB- cord-001824-7c37elh6 295 36 in in IN cord-001824-7c37elh6 295 37 the the DT cord-001824-7c37elh6 295 38 wobble wobble NN cord-001824-7c37elh6 295 39 position position NN cord-001824-7c37elh6 295 40 of of IN cord-001824-7c37elh6 295 41 the the DT cord-001824-7c37elh6 295 42 anticodon anticodon NN cord-001824-7c37elh6 295 43 of of IN cord-001824-7c37elh6 295 44 tRNA(Leu tRNA(Leu NNP cord-001824-7c37elh6 295 45 ) ) -RRB- cord-001824-7c37elh6 295 46 ( ( -LRB- cord-001824-7c37elh6 295 47 U*AA u*aa NN cord-001824-7c37elh6 295 48 ) ) -RRB- cord-001824-7c37elh6 295 49 from from IN cord-001824-7c37elh6 295 50 brewer brewer NN cord-001824-7c37elh6 295 51 's 's POS cord-001824-7c37elh6 295 52 yeast yeast NN cord-001824-7c37elh6 295 53 Eukaryotic Eukaryotic NNP cord-001824-7c37elh6 295 54 wobble wobble VBP cord-001824-7c37elh6 295 55 uridine uridine NN cord-001824-7c37elh6 295 56 modifications modification NNS cord-001824-7c37elh6 295 57 promote promote VBP cord-001824-7c37elh6 295 58 a a DT cord-001824-7c37elh6 295 59 functionally functionally RB cord-001824-7c37elh6 295 60 redundant redundant JJ cord-001824-7c37elh6 295 61 decoding decoding NN cord-001824-7c37elh6 295 62 system system NN cord-001824-7c37elh6 295 63 Eukaryotic Eukaryotic NNP cord-001824-7c37elh6 295 64 tRNAs(Pro tRNAs(Pro NFP cord-001824-7c37elh6 295 65 ) ) -RRB- cord-001824-7c37elh6 295 66 : : : cord-001824-7c37elh6 295 67 primary primary JJ cord-001824-7c37elh6 295 68 structure structure NN cord-001824-7c37elh6 295 69 of of IN cord-001824-7c37elh6 295 70 the the DT cord-001824-7c37elh6 295 71 anticodon anticodon NNP cord-001824-7c37elh6 295 72 loop loop NN cord-001824-7c37elh6 295 73 ; ; : cord-001824-7c37elh6 295 74 presence presence NN cord-001824-7c37elh6 295 75 of of IN cord-001824-7c37elh6 295 76 5-carbamoylmethyluridine 5-carbamoylmethyluridine CD cord-001824-7c37elh6 295 77 or or CC cord-001824-7c37elh6 295 78 inosine inosine JJ cord-001824-7c37elh6 295 79 as as IN cord-001824-7c37elh6 295 80 the the DT cord-001824-7c37elh6 295 81 first first JJ cord-001824-7c37elh6 295 82 nucleoside nucleoside NN cord-001824-7c37elh6 295 83 of of IN cord-001824-7c37elh6 295 84 the the DT cord-001824-7c37elh6 295 85 anticodon anticodon NN cord-001824-7c37elh6 296 1 The the DT cord-001824-7c37elh6 296 2 primary primary JJ cord-001824-7c37elh6 296 3 structure structure NN cord-001824-7c37elh6 296 4 of of IN cord-001824-7c37elh6 296 5 yeast yeast NN cord-001824-7c37elh6 296 6 glutamic glutamic NN cord-001824-7c37elh6 296 7 acid acid NN cord-001824-7c37elh6 296 8 tRNA tRNA NNP cord-001824-7c37elh6 296 9 specific specific JJ cord-001824-7c37elh6 296 10 to to IN cord-001824-7c37elh6 296 11 the the DT cord-001824-7c37elh6 296 12 GAA GAA NNP cord-001824-7c37elh6 296 13 codon codon NN cord-001824-7c37elh6 296 14 Presence Presence NNP cord-001824-7c37elh6 296 15 of of IN cord-001824-7c37elh6 296 16 the the DT cord-001824-7c37elh6 296 17 methylester methylester NNP cord-001824-7c37elh6 296 18 of of IN cord-001824-7c37elh6 296 19 5-carboxymethyl 5-carboxymethyl CD cord-001824-7c37elh6 296 20 uridine uridine NN cord-001824-7c37elh6 296 21 in in IN cord-001824-7c37elh6 296 22 the the DT cord-001824-7c37elh6 296 23 wobble wobble NN cord-001824-7c37elh6 296 24 position position NN cord-001824-7c37elh6 296 25 of of IN cord-001824-7c37elh6 296 26 the the DT cord-001824-7c37elh6 296 27 anticodon anticodon NN cord-001824-7c37elh6 296 28 of of IN cord-001824-7c37elh6 296 29 tRNAIII tRNAIII NNP cord-001824-7c37elh6 296 30 Arg Arg NNP cord-001824-7c37elh6 296 31 from from IN cord-001824-7c37elh6 296 32 brewer brewer NN cord-001824-7c37elh6 296 33 's 's POS cord-001824-7c37elh6 296 34 yeast yeast NN cord-001824-7c37elh6 296 35 The the DT cord-001824-7c37elh6 296 36 Kluyveromyces Kluyveromyces NNPS cord-001824-7c37elh6 296 37 lactis lactis RB cord-001824-7c37elh6 297 1 ␥ ␥ XX cord-001824-7c37elh6 298 1 -toxin -toxin NFP cord-001824-7c37elh6 298 2 targets target VBZ cord-001824-7c37elh6 298 3 tRNA tRNA NNP cord-001824-7c37elh6 298 4 anticodons anticodons NNP cord-001824-7c37elh6 299 1 The the DT cord-001824-7c37elh6 299 2 nucleotide nucleotide JJ cord-001824-7c37elh6 299 3 sequences sequence NNS cord-001824-7c37elh6 299 4 and and CC cord-001824-7c37elh6 299 5 coding code VBG cord-001824-7c37elh6 299 6 properties property NNS cord-001824-7c37elh6 299 7 of of IN cord-001824-7c37elh6 299 8 the the DT cord-001824-7c37elh6 299 9 major major JJ cord-001824-7c37elh6 299 10 and and CC cord-001824-7c37elh6 299 11 minor minor JJ cord-001824-7c37elh6 299 12 lysine lysine NN cord-001824-7c37elh6 299 13 transfer transfer NN cord-001824-7c37elh6 299 14 ribonucleic ribonucleic NN cord-001824-7c37elh6 299 15 acids acid NNS cord-001824-7c37elh6 299 16 from from IN cord-001824-7c37elh6 299 17 the the DT cord-001824-7c37elh6 299 18 haploid haploid JJ cord-001824-7c37elh6 299 19 yeast yeast NN cord-001824-7c37elh6 299 20 Saccharomyces saccharomyce NNS cord-001824-7c37elh6 299 21 cerevisiae cerevisiae NNS cord-001824-7c37elh6 299 22 S288C s288c NN cord-001824-7c37elh6 299 23 Modified modify VBN cord-001824-7c37elh6 299 24 nucleoside nucleoside NN cord-001824-7c37elh6 299 25 , , , cord-001824-7c37elh6 299 26 5-carbamoylmethyluridine 5-carbamoylmethyluridine CD cord-001824-7c37elh6 299 27 , , , cord-001824-7c37elh6 299 28 located locate VBN cord-001824-7c37elh6 299 29 in in IN cord-001824-7c37elh6 299 30 the the DT cord-001824-7c37elh6 299 31 first first JJ cord-001824-7c37elh6 299 32 position position NN cord-001824-7c37elh6 299 33 of of IN cord-001824-7c37elh6 299 34 the the DT cord-001824-7c37elh6 299 35 anticodon anticodon NN cord-001824-7c37elh6 299 36 of of IN cord-001824-7c37elh6 299 37 yeast yeast NN cord-001824-7c37elh6 299 38 valine valine NNP cord-001824-7c37elh6 299 39 tRNA tRNA NNP cord-001824-7c37elh6 299 40 Elongator Elongator NNP cord-001824-7c37elh6 299 41 , , , cord-001824-7c37elh6 299 42 a a DT cord-001824-7c37elh6 299 43 conserved conserve VBN cord-001824-7c37elh6 299 44 complex complex NN cord-001824-7c37elh6 299 45 required require VBN cord-001824-7c37elh6 299 46 for for IN cord-001824-7c37elh6 299 47 wobble wobble NN cord-001824-7c37elh6 299 48 uridine uridine JJ cord-001824-7c37elh6 299 49 modifications modification NNS cord-001824-7c37elh6 299 50 in in IN cord-001824-7c37elh6 299 51 Eukaryotes Eukaryotes NNP cord-001824-7c37elh6 299 52 Elevated elevate VBN cord-001824-7c37elh6 299 53 Levels level NNS cord-001824-7c37elh6 299 54 of of IN cord-001824-7c37elh6 299 55 Two two CD cord-001824-7c37elh6 299 56 tRNA trna NN cord-001824-7c37elh6 299 57 Species Species NNPS cord-001824-7c37elh6 299 58 Bypass Bypass NNP cord-001824-7c37elh6 299 59 the the DT cord-001824-7c37elh6 299 60 Requirement Requirement NNP cord-001824-7c37elh6 299 61 for for IN cord-001824-7c37elh6 299 62 Elongator Elongator NNP cord-001824-7c37elh6 299 63 Complex Complex NNP cord-001824-7c37elh6 299 64 in in IN cord-001824-7c37elh6 299 65 Transcription Transcription NNP cord-001824-7c37elh6 299 66 and and CC cord-001824-7c37elh6 299 67 Exocytosis Exocytosis NNP cord-001824-7c37elh6 299 68 Elongator Elongator NNP cord-001824-7c37elh6 299 69 complex complex JJ cord-001824-7c37elh6 299 70 influences influence NNS cord-001824-7c37elh6 299 71 telomeric telomeric JJ cord-001824-7c37elh6 299 72 gene gene NN cord-001824-7c37elh6 299 73 silencing silencing NN cord-001824-7c37elh6 299 74 and and CC cord-001824-7c37elh6 299 75 DNA dna NN cord-001824-7c37elh6 299 76 damage damage NN cord-001824-7c37elh6 299 77 response response NN cord-001824-7c37elh6 299 78 by by IN cord-001824-7c37elh6 299 79 its -PRON- PRP$ cord-001824-7c37elh6 299 80 role role NN cord-001824-7c37elh6 299 81 in in IN cord-001824-7c37elh6 299 82 wobble wobble NN cord-001824-7c37elh6 299 83 uridine uridine NNP cord-001824-7c37elh6 299 84 tRNA trna NN cord-001824-7c37elh6 299 85 modification modification NN cord-001824-7c37elh6 300 1 The the DT cord-001824-7c37elh6 300 2 modified modify VBN cord-001824-7c37elh6 300 3 wobble wobble NN cord-001824-7c37elh6 301 1 nucleoside nucleoside JJ cord-001824-7c37elh6 301 2 uridine-5-oxyacetic uridine-5-oxyacetic JJ cord-001824-7c37elh6 301 3 acid acid NN cord-001824-7c37elh6 301 4 in in IN cord-001824-7c37elh6 301 5 tRNAPro(cmo5UGG trnapro(cmo5ugg NN cord-001824-7c37elh6 301 6 ) ) -RRB- cord-001824-7c37elh6 301 7 promotes promote VBZ cord-001824-7c37elh6 301 8 reading reading NN cord-001824-7c37elh6 301 9 of of IN cord-001824-7c37elh6 301 10 all all DT cord-001824-7c37elh6 301 11 four four CD cord-001824-7c37elh6 301 12 proline proline NN cord-001824-7c37elh6 301 13 codons codon NNS cord-001824-7c37elh6 301 14 in in IN cord-001824-7c37elh6 301 15 vivo vivo NNP cord-001824-7c37elh6 301 16 Translational translational JJ cord-001824-7c37elh6 301 17 infidelity infidelity NN cord-001824-7c37elh6 301 18 - - HYPH cord-001824-7c37elh6 301 19 induced induce VBN cord-001824-7c37elh6 301 20 protein protein NN cord-001824-7c37elh6 301 21 stress stress NN cord-001824-7c37elh6 301 22 results result VBZ cord-001824-7c37elh6 301 23 from from IN cord-001824-7c37elh6 301 24 a a DT cord-001824-7c37elh6 301 25 deficiency deficiency NN cord-001824-7c37elh6 301 26 in in IN cord-001824-7c37elh6 301 27 Trm9-catalyzed Trm9-catalyzed NNP cord-001824-7c37elh6 301 28 tRNA tRNA NNP cord-001824-7c37elh6 301 29 modifications modification NNS cord-001824-7c37elh6 301 30 Improved improve VBN cord-001824-7c37elh6 301 31 method method NN cord-001824-7c37elh6 301 32 for for IN cord-001824-7c37elh6 301 33 high high JJ cord-001824-7c37elh6 301 34 efficiency efficiency NN cord-001824-7c37elh6 301 35 transformation transformation NN cord-001824-7c37elh6 301 36 of of IN cord-001824-7c37elh6 301 37 intact intact JJ cord-001824-7c37elh6 301 38 yeast yeast NN cord-001824-7c37elh6 301 39 cells cell NNS cord-001824-7c37elh6 301 40 Methods method NNS cord-001824-7c37elh6 301 41 in in IN cord-001824-7c37elh6 302 1 yeast yeast NN cord-001824-7c37elh6 302 2 genetics genetics NN cord-001824-7c37elh6 302 3 An An NNP cord-001824-7c37elh6 302 4 in in IN cord-001824-7c37elh6 302 5 vivo vivo NN cord-001824-7c37elh6 302 6 dual dual JJ cord-001824-7c37elh6 302 7 - - HYPH cord-001824-7c37elh6 302 8 luciferase luciferase NN cord-001824-7c37elh6 302 9 assay assay NN cord-001824-7c37elh6 302 10 system system NN cord-001824-7c37elh6 302 11 for for IN cord-001824-7c37elh6 302 12 studying study VBG cord-001824-7c37elh6 302 13 translational translational JJ cord-001824-7c37elh6 302 14 recoding recoding NN cord-001824-7c37elh6 302 15 in in IN cord-001824-7c37elh6 302 16 the the DT cord-001824-7c37elh6 302 17 yeast yeast NN cord-001824-7c37elh6 302 18 Saccharomyces Saccharomyces NNP cord-001824-7c37elh6 302 19 cerevisiae cerevisiae VBZ cord-001824-7c37elh6 302 20 Ribosomal Ribosomal NNP cord-001824-7c37elh6 302 21 frameshifting frameshifte VBG cord-001824-7c37elh6 302 22 in in IN cord-001824-7c37elh6 302 23 the the DT cord-001824-7c37elh6 302 24 yeast yeast NN cord-001824-7c37elh6 302 25 retrotransposon retrotransposon NN cord-001824-7c37elh6 302 26 Ty Ty NNP cord-001824-7c37elh6 303 1 : : : cord-001824-7c37elh6 303 2 tRNAs trna NNS cord-001824-7c37elh6 303 3 induce induce VBP cord-001824-7c37elh6 303 4 slippage slippage NN cord-001824-7c37elh6 303 5 on on IN cord-001824-7c37elh6 303 6 a a DT cord-001824-7c37elh6 303 7 7 7 CD cord-001824-7c37elh6 303 8 nucleotide nucleotide NN cord-001824-7c37elh6 303 9 minimal minimal JJ cord-001824-7c37elh6 303 10 site site NN cord-001824-7c37elh6 303 11 Studies Studies NNPS cord-001824-7c37elh6 303 12 on on IN cord-001824-7c37elh6 303 13 polynucleotides polynucleotides NNP cord-001824-7c37elh6 303 14 , , , cord-001824-7c37elh6 303 15 lxviii lxviii VB cord-001824-7c37elh6 303 16 the the DT cord-001824-7c37elh6 303 17 primary primary JJ cord-001824-7c37elh6 303 18 structure structure NN cord-001824-7c37elh6 303 19 of of IN cord-001824-7c37elh6 303 20 yeast yeast NN cord-001824-7c37elh6 303 21 phenylalanine phenylalanine NN cord-001824-7c37elh6 303 22 transfer transfer NN cord-001824-7c37elh6 303 23 RNA RNA NNP cord-001824-7c37elh6 303 24 2009 2009 CD cord-001824-7c37elh6 303 25 : : : cord-001824-7c37elh6 304 1 compilation compilation NN cord-001824-7c37elh6 304 2 of of IN cord-001824-7c37elh6 304 3 tRNA tRNA NNP cord-001824-7c37elh6 304 4 sequences sequence NNS cord-001824-7c37elh6 304 5 and and CC cord-001824-7c37elh6 304 6 tRNA tRNA NNP cord-001824-7c37elh6 304 7 genes gene NNS cord-001824-7c37elh6 304 8 Translational Translational NNP cord-001824-7c37elh6 304 9 termination termination NN cord-001824-7c37elh6 304 10 comes come VBZ cord-001824-7c37elh6 304 11 of of IN cord-001824-7c37elh6 304 12 age age NN cord-001824-7c37elh6 305 1 An an DT cord-001824-7c37elh6 305 2 early early JJ cord-001824-7c37elh6 305 3 step step NN cord-001824-7c37elh6 305 4 in in IN cord-001824-7c37elh6 305 5 wobble wobble NN cord-001824-7c37elh6 306 1 uridine uridine NNP cord-001824-7c37elh6 306 2 tRNA tRNA NNP cord-001824-7c37elh6 306 3 modification modification NN cord-001824-7c37elh6 306 4 requires require VBZ cord-001824-7c37elh6 306 5 the the DT cord-001824-7c37elh6 306 6 Elongator Elongator NNP cord-001824-7c37elh6 306 7 complex complex JJ cord-001824-7c37elh6 306 8 Novel novel NN cord-001824-7c37elh6 306 9 methyltransferase methyltransferase NN cord-001824-7c37elh6 306 10 for for IN cord-001824-7c37elh6 306 11 modified modify VBN cord-001824-7c37elh6 306 12 uridine uridine NN cord-001824-7c37elh6 306 13 residues residue NNS cord-001824-7c37elh6 306 14 at at IN cord-001824-7c37elh6 306 15 the the DT cord-001824-7c37elh6 306 16 wobble wobble NN cord-001824-7c37elh6 306 17 position position NN cord-001824-7c37elh6 306 18 of of IN cord-001824-7c37elh6 306 19 tRNA trna NN cord-001824-7c37elh6 306 20 is be VBZ cord-001824-7c37elh6 306 21 a a DT cord-001824-7c37elh6 306 22 15-kDa 15-kda CD cord-001824-7c37elh6 306 23 zinc zinc NN cord-001824-7c37elh6 306 24 finger finger NN cord-001824-7c37elh6 306 25 protein protein NN cord-001824-7c37elh6 306 26 essential essential JJ cord-001824-7c37elh6 306 27 for for IN cord-001824-7c37elh6 306 28 the the DT cord-001824-7c37elh6 306 29 activity activity NN cord-001824-7c37elh6 306 30 of of IN cord-001824-7c37elh6 306 31 two two CD cord-001824-7c37elh6 306 32 tRNA tRNA NNS cord-001824-7c37elh6 306 33 and and CC cord-001824-7c37elh6 306 34 one one CD cord-001824-7c37elh6 306 35 protein protein NN cord-001824-7c37elh6 306 36 methyltransferases methyltransferase NNS cord-001824-7c37elh6 306 37 in in IN cord-001824-7c37elh6 306 38 yeast yeast NN cord-001824-7c37elh6 307 1 A a DT cord-001824-7c37elh6 307 2 conserved conserved JJ cord-001824-7c37elh6 307 3 modified modify VBN cord-001824-7c37elh6 307 4 wobble wobble NN cord-001824-7c37elh6 307 5 nucleoside nucleoside RB cord-001824-7c37elh6 308 1 ( ( -LRB- cord-001824-7c37elh6 308 2 mcm5s2U mcm5s2U NNP cord-001824-7c37elh6 308 3 ) ) -RRB- cord-001824-7c37elh6 308 4 in in IN cord-001824-7c37elh6 308 5 lysyl lysyl NNP cord-001824-7c37elh6 308 6 - - HYPH cord-001824-7c37elh6 308 7 tRNA tRNA NNP cord-001824-7c37elh6 308 8 is be VBZ cord-001824-7c37elh6 308 9 required require VBN cord-001824-7c37elh6 308 10 for for IN cord-001824-7c37elh6 308 11 viability viability NN cord-001824-7c37elh6 308 12 in in IN cord-001824-7c37elh6 308 13 yeast yeast NN cord-001824-7c37elh6 308 14 Uniform Uniform NNP cord-001824-7c37elh6 308 15 binding binding NN cord-001824-7c37elh6 308 16 of of IN cord-001824-7c37elh6 308 17 aminoacylated aminoacylate VBN cord-001824-7c37elh6 308 18 transfer transfer NN cord-001824-7c37elh6 308 19 RNAs rna NNS cord-001824-7c37elh6 308 20 to to IN cord-001824-7c37elh6 308 21 the the DT cord-001824-7c37elh6 308 22 ribosomal ribosomal JJ cord-001824-7c37elh6 308 23 A a NN cord-001824-7c37elh6 308 24 and and CC cord-001824-7c37elh6 308 25 P p NN cord-001824-7c37elh6 308 26 sites site NNS cord-001824-7c37elh6 308 27 Transfer Transfer NNP cord-001824-7c37elh6 308 28 RNA RNA NNP cord-001824-7c37elh6 308 29 gene gene NN cord-001824-7c37elh6 308 30 redundancy redundancy NN cord-001824-7c37elh6 308 31 and and CC cord-001824-7c37elh6 308 32 translational translational JJ cord-001824-7c37elh6 308 33 selection selection NN cord-001824-7c37elh6 308 34 in in IN cord-001824-7c37elh6 308 35 Saccharomyces Saccharomyces NNP cord-001824-7c37elh6 308 36 cerevisiae cerevisiae VBZ cord-001824-7c37elh6 308 37 tRNA trna NN cord-001824-7c37elh6 308 38 tKUUU tkuuu NN cord-001824-7c37elh6 308 39 , , , cord-001824-7c37elh6 308 40 tQUUG tquug NN cord-001824-7c37elh6 308 41 , , , cord-001824-7c37elh6 308 42 and and CC cord-001824-7c37elh6 308 43 tEUUC teuuc DT cord-001824-7c37elh6 308 44 wobble wobble VB cord-001824-7c37elh6 308 45 position position NN cord-001824-7c37elh6 308 46 modifications modification NNS cord-001824-7c37elh6 308 47 fine fine JJ cord-001824-7c37elh6 308 48 - - HYPH cord-001824-7c37elh6 308 49 tune tune NN cord-001824-7c37elh6 308 50 protein protein NN cord-001824-7c37elh6 308 51 translation translation NN cord-001824-7c37elh6 308 52 by by IN cord-001824-7c37elh6 308 53 promoting promote VBG cord-001824-7c37elh6 308 54 ribosome ribosome NN cord-001824-7c37elh6 308 55 A A NNP cord-001824-7c37elh6 308 56 - - HYPH cord-001824-7c37elh6 308 57 site site NN cord-001824-7c37elh6 308 58 binding bind VBG cord-001824-7c37elh6 308 59 Exonuclease Exonuclease NNP cord-001824-7c37elh6 308 60 I i NN cord-001824-7c37elh6 308 61 of of IN cord-001824-7c37elh6 308 62 Saccharomyces Saccharomyces NNP cord-001824-7c37elh6 308 63 cerevisiae cerevisiae NN cord-001824-7c37elh6 308 64 functions function NNS cord-001824-7c37elh6 308 65 in in IN cord-001824-7c37elh6 308 66 mitotic mitotic JJ cord-001824-7c37elh6 308 67 recombination recombination NN cord-001824-7c37elh6 308 68 in in IN cord-001824-7c37elh6 308 69 vivo vivo NN cord-001824-7c37elh6 308 70 and and CC cord-001824-7c37elh6 308 71 in in IN cord-001824-7c37elh6 308 72 vitro vitro FW cord-001824-7c37elh6 308 73 Unexpected unexpected JJ cord-001824-7c37elh6 308 74 accumulation accumulation NN cord-001824-7c37elh6 308 75 of of IN cord-001824-7c37elh6 308 76 ncm(5)U ncm(5)u JJ cord-001824-7c37elh6 308 77 and and CC cord-001824-7c37elh6 308 78 ncm(5)S(2 ncm(5)S(2 NNP cord-001824-7c37elh6 308 79 ) ) -RRB- cord-001824-7c37elh6 309 1 ( ( -LRB- cord-001824-7c37elh6 309 2 U U NNP cord-001824-7c37elh6 309 3 ) ) -RRB- cord-001824-7c37elh6 309 4 in in IN cord-001824-7c37elh6 309 5 a a DT cord-001824-7c37elh6 309 6 trm9 trm9 NNP cord-001824-7c37elh6 309 7 mutant mutant NN cord-001824-7c37elh6 309 8 suggests suggest VBZ cord-001824-7c37elh6 309 9 an an DT cord-001824-7c37elh6 309 10 additional additional JJ cord-001824-7c37elh6 309 11 step step NN cord-001824-7c37elh6 309 12 in in IN cord-001824-7c37elh6 309 13 the the DT cord-001824-7c37elh6 309 14 synthesis synthesis NN cord-001824-7c37elh6 309 15 of of IN cord-001824-7c37elh6 309 16 mcm(5)U mcm(5)U NNP cord-001824-7c37elh6 309 17 and and CC cord-001824-7c37elh6 309 18 mcm(5)S(2)U mcm(5)S(2)U `` cord-001824-7c37elh6 309 19 Large large JJ cord-001824-7c37elh6 309 20 oligonucleotides oligonucleotide NNS cord-001824-7c37elh6 309 21 isolated isolate VBN cord-001824-7c37elh6 309 22 from from IN cord-001824-7c37elh6 309 23 yeast yeast NN cord-001824-7c37elh6 309 24 tyrosine tyrosine NN cord-001824-7c37elh6 309 25 transfer transfer NN cord-001824-7c37elh6 309 26 ribonucleic ribonucleic NN cord-001824-7c37elh6 309 27 acid acid NN cord-001824-7c37elh6 309 28 after after IN cord-001824-7c37elh6 309 29 partial partial JJ cord-001824-7c37elh6 309 30 digestion digestion NN cord-001824-7c37elh6 309 31 with with IN cord-001824-7c37elh6 309 32 ribonuclease ribonuclease NN cord-001824-7c37elh6 309 33 T1 T1 NNP cord-001824-7c37elh6 309 34 Thio Thio NNP cord-001824-7c37elh6 309 35 - - HYPH cord-001824-7c37elh6 309 36 modification modification NN cord-001824-7c37elh6 309 37 of of IN cord-001824-7c37elh6 309 38 yeast yeast NN cord-001824-7c37elh6 309 39 cytosolic cytosolic JJ cord-001824-7c37elh6 309 40 tRNA tRNA NNP cord-001824-7c37elh6 309 41 requires require VBZ cord-001824-7c37elh6 309 42 a a DT cord-001824-7c37elh6 309 43 ubiquitin ubiquitin NN cord-001824-7c37elh6 309 44 - - HYPH cord-001824-7c37elh6 309 45 related relate VBN cord-001824-7c37elh6 309 46 system system NN cord-001824-7c37elh6 309 47 that that WDT cord-001824-7c37elh6 309 48 resembles resemble VBZ cord-001824-7c37elh6 309 49 bacterial bacterial JJ cord-001824-7c37elh6 309 50 sulfur sulfur NN cord-001824-7c37elh6 309 51 transfer transfer NN cord-001824-7c37elh6 309 52 systems system NNS cord-001824-7c37elh6 309 53 Ubiquitin Ubiquitin NNP cord-001824-7c37elh6 309 54 - - HYPH cord-001824-7c37elh6 309 55 related relate VBN cord-001824-7c37elh6 309 56 modifier modifier NN cord-001824-7c37elh6 309 57 Urm1 Urm1 NNP cord-001824-7c37elh6 309 58 acts act VBZ cord-001824-7c37elh6 309 59 as as IN cord-001824-7c37elh6 309 60 a a DT cord-001824-7c37elh6 309 61 sulphur sulphur NN cord-001824-7c37elh6 309 62 carrier carrier NN cord-001824-7c37elh6 309 63 in in IN cord-001824-7c37elh6 309 64 thiolation thiolation NN cord-001824-7c37elh6 309 65 of of IN cord-001824-7c37elh6 309 66 eukaryotic eukaryotic JJ cord-001824-7c37elh6 309 67 transfer transfer NN cord-001824-7c37elh6 310 1 RNA RNA NNP cord-001824-7c37elh6 310 2 Mechanistic mechanistic JJ cord-001824-7c37elh6 310 3 characterization characterization NN cord-001824-7c37elh6 310 4 of of IN cord-001824-7c37elh6 310 5 the the DT cord-001824-7c37elh6 310 6 sulfur sulfur NN cord-001824-7c37elh6 310 7 - - HYPH cord-001824-7c37elh6 310 8 relay relay NN cord-001824-7c37elh6 310 9 system system NN cord-001824-7c37elh6 310 10 for for IN cord-001824-7c37elh6 310 11 eukaryotic eukaryotic JJ cord-001824-7c37elh6 310 12 2-thiouridine 2-thiouridine CD cord-001824-7c37elh6 310 13 biogenesis biogenesis NN cord-001824-7c37elh6 310 14 at at IN cord-001824-7c37elh6 310 15 tRNA trna NN cord-001824-7c37elh6 310 16 wobble wobble NN cord-001824-7c37elh6 310 17 positions position NNS cord-001824-7c37elh6 310 18 Enhancer Enhancer NNP cord-001824-7c37elh6 310 19 and and CC cord-001824-7c37elh6 310 20 silencerlike silencerlike NN cord-001824-7c37elh6 310 21 sites site NNS cord-001824-7c37elh6 310 22 within within IN cord-001824-7c37elh6 310 23 the the DT cord-001824-7c37elh6 310 24 transcribed transcribe VBN cord-001824-7c37elh6 310 25 portion portion NN cord-001824-7c37elh6 310 26 of of IN cord-001824-7c37elh6 310 27 a a DT cord-001824-7c37elh6 310 28 Ty2 ty2 CD cord-001824-7c37elh6 310 29 transposable transposable JJ cord-001824-7c37elh6 310 30 element element NN cord-001824-7c37elh6 310 31 of of IN cord-001824-7c37elh6 310 32 Saccharomyces saccharomyce NNS cord-001824-7c37elh6 310 33 cerevisiae cerevisiae NNS cord-001824-7c37elh6 311 1 We -PRON- PRP cord-001824-7c37elh6 311 2 acknowledge acknowledge VBP cord-001824-7c37elh6 311 3 Prof. Prof. NNP cord-001824-7c37elh6 311 4 G. G. NNP cord-001824-7c37elh6 311 5 R. R. NNP cord-001824-7c37elh6 311 6 Björk Björk NNP cord-001824-7c37elh6 311 7 _SP cord-001824-7c37elh6 311 8 Nucleic Nucleic NNP cord-001824-7c37elh6 311 9 Acids Acids NNPS cord-001824-7c37elh6 311 10 Research Research NNP cord-001824-7c37elh6 311 11 , , , cord-001824-7c37elh6 311 12 2015 2015 CD cord-001824-7c37elh6 311 13 , , , cord-001824-7c37elh6 311 14 Vol Vol NNP cord-001824-7c37elh6 311 15 . . . cord-001824-7c37elh6 312 1 43 43 CD cord-001824-7c37elh6 312 2 , , , cord-001824-7c37elh6 312 3 No no NN cord-001824-7c37elh6 312 4 . . NN cord-001824-7c37elh6 312 5 19 19 CD cord-001824-7c37elh6 312 6 9497 9497 CD cord-001824-7c37elh6 312 7 ( ( -LRB- cord-001824-7c37elh6 312 8 41 41 CD cord-001824-7c37elh6 312 9 , , , cord-001824-7c37elh6 312 10 58 58 CD cord-001824-7c37elh6 312 11 ) ) -RRB- cord-001824-7c37elh6 312 12 . . . cord-001824-7c37elh6 313 1 c c LS cord-001824-7c37elh6 313 2 Difference Difference NNP cord-001824-7c37elh6 313 3 in in IN cord-001824-7c37elh6 313 4 frameshifting frameshifte VBG cord-001824-7c37elh6 313 5 between between IN cord-001824-7c37elh6 313 6 elp3 elp3 CD cord-001824-7c37elh6 313 7 mutant mutant JJ cord-001824-7c37elh6 313 8 and and CC cord-001824-7c37elh6 313 9 wild wild JJ cord-001824-7c37elh6 313 10 type type NN cord-001824-7c37elh6 313 11 was be VBD cord-001824-7c37elh6 313 12 significant significant JJ cord-001824-7c37elh6 313 13 as as IN cord-001824-7c37elh6 313 14 determined determine VBN cord-001824-7c37elh6 313 15 by by IN cord-001824-7c37elh6 313 16 two two CD cord-001824-7c37elh6 313 17 - - HYPH cord-001824-7c37elh6 313 18 tail tail NN cord-001824-7c37elh6 313 19 t t NN cord-001824-7c37elh6 313 20 - - HYPH cord-001824-7c37elh6 313 21 test test NN cord-001824-7c37elh6 313 22 ( ( -LRB- cord-001824-7c37elh6 313 23 P p NN cord-001824-7c37elh6 313 24 < < XX cord-001824-7c37elh6 313 25 0.02 0.02 CD cord-001824-7c37elh6 313 26 ) ) -RRB- cord-001824-7c37elh6 313 27 . . . cord-001824-7c37elh6 314 1 d d NNP cord-001824-7c37elh6 314 2 Difference Difference NNP cord-001824-7c37elh6 314 3 in in IN cord-001824-7c37elh6 314 4 frameshifting frameshifte VBG cord-001824-7c37elh6 314 5 between between IN cord-001824-7c37elh6 314 6 elp3 elp3 CD cord-001824-7c37elh6 314 7 mutant mutant JJ cord-001824-7c37elh6 314 8 and and CC cord-001824-7c37elh6 314 9 wild wild JJ cord-001824-7c37elh6 314 10 type type NN cord-001824-7c37elh6 314 11 was be VBD cord-001824-7c37elh6 314 12 not not RB cord-001824-7c37elh6 314 13 significant significant JJ cord-001824-7c37elh6 314 14 as as IN cord-001824-7c37elh6 314 15 determined determine VBN cord-001824-7c37elh6 314 16 by by IN cord-001824-7c37elh6 314 17 two two CD cord-001824-7c37elh6 314 18 - - HYPH cord-001824-7c37elh6 314 19 tail tail NN cord-001824-7c37elh6 314 20 t t NN cord-001824-7c37elh6 314 21 - - HYPH cord-001824-7c37elh6 314 22 test test NN cord-001824-7c37elh6 314 23 ( ( -LRB- cord-001824-7c37elh6 314 24 P p NN cord-001824-7c37elh6 314 25 > > XX cord-001824-7c37elh6 314 26 0.05 0.05 CD cord-001824-7c37elh6 314 27 ) ) -RRB- cord-001824-7c37elh6 314 28 . . .