id sid tid token lemma pos cord-269150-d1sgnxc0 1 1 key key JJ cord-269150-d1sgnxc0 1 2 : : : cord-269150-d1sgnxc0 1 3 cord-269150-d1sgnxc0 cord-269150-d1sgnxc0 CD cord-269150-d1sgnxc0 1 4 authors author NNS cord-269150-d1sgnxc0 1 5 : : : cord-269150-d1sgnxc0 1 6 Tan Tan NNP cord-269150-d1sgnxc0 1 7 , , , cord-269150-d1sgnxc0 1 8 Yong Yong NNP cord-269150-d1sgnxc0 1 9 Wah Wah NNP cord-269150-d1sgnxc0 1 10 ; ; : cord-269150-d1sgnxc0 1 11 Hong Hong NNP cord-269150-d1sgnxc0 1 12 , , , cord-269150-d1sgnxc0 1 13 Wanjin Wanjin NNP cord-269150-d1sgnxc0 1 14 ; ; : cord-269150-d1sgnxc0 1 15 Liu Liu NNP cord-269150-d1sgnxc0 1 16 , , , cord-269150-d1sgnxc0 1 17 Ding Ding NNP cord-269150-d1sgnxc0 1 18 Xiang Xiang NNP cord-269150-d1sgnxc0 2 1 title title NN cord-269150-d1sgnxc0 2 2 : : : cord-269150-d1sgnxc0 2 3 Binding binding NN cord-269150-d1sgnxc0 2 4 of of IN cord-269150-d1sgnxc0 2 5 the the DT cord-269150-d1sgnxc0 2 6 5′-untranslated 5′-untranslated CD cord-269150-d1sgnxc0 2 7 region region NN cord-269150-d1sgnxc0 2 8 of of IN cord-269150-d1sgnxc0 2 9 coronavirus coronavirus NN cord-269150-d1sgnxc0 2 10 RNA RNA NNP cord-269150-d1sgnxc0 2 11 to to IN cord-269150-d1sgnxc0 2 12 zinc zinc NN cord-269150-d1sgnxc0 2 13 finger finger NN cord-269150-d1sgnxc0 2 14 CCHC CCHC NNP cord-269150-d1sgnxc0 2 15 - - HYPH cord-269150-d1sgnxc0 2 16 type type NN cord-269150-d1sgnxc0 2 17 and and CC cord-269150-d1sgnxc0 2 18 RNA rna NN cord-269150-d1sgnxc0 2 19 - - HYPH cord-269150-d1sgnxc0 2 20 binding bind VBG cord-269150-d1sgnxc0 2 21 motif motif NN cord-269150-d1sgnxc0 2 22 1 1 CD cord-269150-d1sgnxc0 2 23 enhances enhance VBZ cord-269150-d1sgnxc0 2 24 viral viral JJ cord-269150-d1sgnxc0 2 25 replication replication NN cord-269150-d1sgnxc0 2 26 and and CC cord-269150-d1sgnxc0 2 27 transcription transcription NN cord-269150-d1sgnxc0 2 28 date date NN cord-269150-d1sgnxc0 3 1 : : : cord-269150-d1sgnxc0 3 2 2012 2012 CD cord-269150-d1sgnxc0 3 3 - - SYM cord-269150-d1sgnxc0 3 4 02 02 CD cord-269150-d1sgnxc0 3 5 - - SYM cord-269150-d1sgnxc0 3 6 22 22 CD cord-269150-d1sgnxc0 3 7 journal journal NN cord-269150-d1sgnxc0 3 8 : : : cord-269150-d1sgnxc0 4 1 Nucleic nucleic JJ cord-269150-d1sgnxc0 4 2 Acids acid NNS cord-269150-d1sgnxc0 4 3 Res res NN cord-269150-d1sgnxc0 4 4 DOI doi NN cord-269150-d1sgnxc0 4 5 : : : cord-269150-d1sgnxc0 5 1 10.1093 10.1093 CD cord-269150-d1sgnxc0 5 2 / / SYM cord-269150-d1sgnxc0 5 3 nar nar NNP cord-269150-d1sgnxc0 5 4 / / SYM cord-269150-d1sgnxc0 5 5 gks165 gks165 NNP cord-269150-d1sgnxc0 5 6 sha sha NNP cord-269150-d1sgnxc0 5 7 : : : cord-269150-d1sgnxc0 5 8 9cd8c3706551ab124d7035449350556c72297e2e 9cd8c3706551ab124d7035449350556c72297e2e CD cord-269150-d1sgnxc0 5 9 doc_id doc_id CD cord-269150-d1sgnxc0 5 10 : : : cord-269150-d1sgnxc0 5 11 269150 269150 CD cord-269150-d1sgnxc0 5 12 cord_uid cord_uid NNS cord-269150-d1sgnxc0 5 13 : : : cord-269150-d1sgnxc0 5 14 d1sgnxc0 d1sgnxc0 . cord-269150-d1sgnxc0 6 1 Coronaviruses Coronaviruses NNP cord-269150-d1sgnxc0 6 2 RNA RNA NNP cord-269150-d1sgnxc0 6 3 synthesis synthesis NN cord-269150-d1sgnxc0 6 4 occurs occur VBZ cord-269150-d1sgnxc0 6 5 in in IN cord-269150-d1sgnxc0 6 6 the the DT cord-269150-d1sgnxc0 6 7 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 6 8 and and CC cord-269150-d1sgnxc0 6 9 is be VBZ cord-269150-d1sgnxc0 6 10 regulated regulate VBN cord-269150-d1sgnxc0 6 11 by by IN cord-269150-d1sgnxc0 6 12 host host NN cord-269150-d1sgnxc0 6 13 cell cell NN cord-269150-d1sgnxc0 6 14 proteins protein NNS cord-269150-d1sgnxc0 6 15 . . . cord-269150-d1sgnxc0 7 1 In in IN cord-269150-d1sgnxc0 7 2 a a DT cord-269150-d1sgnxc0 7 3 screen screen NN cord-269150-d1sgnxc0 7 4 based base VBN cord-269150-d1sgnxc0 7 5 on on IN cord-269150-d1sgnxc0 7 6 a a DT cord-269150-d1sgnxc0 7 7 yeast yeast NN cord-269150-d1sgnxc0 7 8 three three CD cord-269150-d1sgnxc0 7 9 - - HYPH cord-269150-d1sgnxc0 7 10 hybrid hybrid NN cord-269150-d1sgnxc0 7 11 system system NN cord-269150-d1sgnxc0 7 12 using use VBG cord-269150-d1sgnxc0 7 13 the the DT cord-269150-d1sgnxc0 7 14 5′-untranslated 5′-untranslated CD cord-269150-d1sgnxc0 7 15 region region NN cord-269150-d1sgnxc0 7 16 ( ( -LRB- cord-269150-d1sgnxc0 7 17 5′-UTR 5′-utr NN cord-269150-d1sgnxc0 7 18 ) ) -RRB- cord-269150-d1sgnxc0 7 19 of of IN cord-269150-d1sgnxc0 7 20 SARS SARS NNP cord-269150-d1sgnxc0 7 21 coronavirus coronavirus NN cord-269150-d1sgnxc0 7 22 ( ( -LRB- cord-269150-d1sgnxc0 7 23 SARS SARS NNP cord-269150-d1sgnxc0 7 24 - - HYPH cord-269150-d1sgnxc0 7 25 CoV CoV NNP cord-269150-d1sgnxc0 7 26 ) ) -RRB- cord-269150-d1sgnxc0 7 27 RNA RNA NNP cord-269150-d1sgnxc0 7 28 as as IN cord-269150-d1sgnxc0 7 29 bait bait NN cord-269150-d1sgnxc0 7 30 against against IN cord-269150-d1sgnxc0 7 31 a a DT cord-269150-d1sgnxc0 7 32 human human JJ cord-269150-d1sgnxc0 7 33 cDNA cdna NN cord-269150-d1sgnxc0 7 34 library library NN cord-269150-d1sgnxc0 7 35 derived derive VBN cord-269150-d1sgnxc0 7 36 from from IN cord-269150-d1sgnxc0 7 37 HeLa HeLa NNP cord-269150-d1sgnxc0 7 38 cells cell NNS cord-269150-d1sgnxc0 7 39 , , , cord-269150-d1sgnxc0 7 40 we -PRON- PRP cord-269150-d1sgnxc0 7 41 found find VBD cord-269150-d1sgnxc0 7 42 a a DT cord-269150-d1sgnxc0 7 43 positive positive JJ cord-269150-d1sgnxc0 7 44 candidate candidate NN cord-269150-d1sgnxc0 7 45 cellular cellular JJ cord-269150-d1sgnxc0 7 46 protein protein NN cord-269150-d1sgnxc0 7 47 , , , cord-269150-d1sgnxc0 7 48 zinc zinc NN cord-269150-d1sgnxc0 7 49 finger finger NN cord-269150-d1sgnxc0 7 50 CCHC CCHC NNP cord-269150-d1sgnxc0 7 51 - - HYPH cord-269150-d1sgnxc0 7 52 type type NN cord-269150-d1sgnxc0 7 53 and and CC cord-269150-d1sgnxc0 7 54 RNA rna NN cord-269150-d1sgnxc0 7 55 - - HYPH cord-269150-d1sgnxc0 7 56 binding bind VBG cord-269150-d1sgnxc0 7 57 motif motif NN cord-269150-d1sgnxc0 7 58 1 1 CD cord-269150-d1sgnxc0 7 59 ( ( -LRB- cord-269150-d1sgnxc0 7 60 MADP1 MADP1 NNP cord-269150-d1sgnxc0 7 61 ) ) -RRB- cord-269150-d1sgnxc0 7 62 , , , cord-269150-d1sgnxc0 7 63 to to TO cord-269150-d1sgnxc0 7 64 be be VB cord-269150-d1sgnxc0 7 65 able able JJ cord-269150-d1sgnxc0 7 66 to to TO cord-269150-d1sgnxc0 7 67 interact interact VB cord-269150-d1sgnxc0 7 68 with with IN cord-269150-d1sgnxc0 7 69 this this DT cord-269150-d1sgnxc0 7 70 region region NN cord-269150-d1sgnxc0 7 71 of of IN cord-269150-d1sgnxc0 7 72 the the DT cord-269150-d1sgnxc0 7 73 SARS SARS NNP cord-269150-d1sgnxc0 7 74 - - HYPH cord-269150-d1sgnxc0 7 75 CoV CoV NNP cord-269150-d1sgnxc0 7 76 genome genome NN cord-269150-d1sgnxc0 7 77 . . . cord-269150-d1sgnxc0 8 1 This this DT cord-269150-d1sgnxc0 8 2 interaction interaction NN cord-269150-d1sgnxc0 8 3 was be VBD cord-269150-d1sgnxc0 8 4 subsequently subsequently RB cord-269150-d1sgnxc0 8 5 confirmed confirm VBN cord-269150-d1sgnxc0 8 6 in in IN cord-269150-d1sgnxc0 8 7 coronavirus coronavirus NN cord-269150-d1sgnxc0 8 8 infectious infectious JJ cord-269150-d1sgnxc0 8 9 bronchitis bronchitis NN cord-269150-d1sgnxc0 8 10 virus virus NN cord-269150-d1sgnxc0 8 11 ( ( -LRB- cord-269150-d1sgnxc0 8 12 IBV IBV NNP cord-269150-d1sgnxc0 8 13 ) ) -RRB- cord-269150-d1sgnxc0 8 14 . . . cord-269150-d1sgnxc0 9 1 The the DT cord-269150-d1sgnxc0 9 2 specificity specificity NN cord-269150-d1sgnxc0 9 3 of of IN cord-269150-d1sgnxc0 9 4 the the DT cord-269150-d1sgnxc0 9 5 interaction interaction NN cord-269150-d1sgnxc0 9 6 between between IN cord-269150-d1sgnxc0 9 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 9 8 and and CC cord-269150-d1sgnxc0 9 9 the the DT cord-269150-d1sgnxc0 9 10 5′-UTR 5′-utr NN cord-269150-d1sgnxc0 9 11 of of IN cord-269150-d1sgnxc0 9 12 IBV IBV NNP cord-269150-d1sgnxc0 9 13 was be VBD cord-269150-d1sgnxc0 9 14 investigated investigate VBN cord-269150-d1sgnxc0 9 15 and and CC cord-269150-d1sgnxc0 9 16 confirmed confirm VBN cord-269150-d1sgnxc0 9 17 by by IN cord-269150-d1sgnxc0 9 18 using use VBG cord-269150-d1sgnxc0 9 19 an an DT cord-269150-d1sgnxc0 9 20 RNA RNA NNP cord-269150-d1sgnxc0 9 21 pull pull VB cord-269150-d1sgnxc0 9 22 - - HYPH cord-269150-d1sgnxc0 9 23 down down RP cord-269150-d1sgnxc0 9 24 assay assay NN cord-269150-d1sgnxc0 9 25 . . . cord-269150-d1sgnxc0 10 1 The the DT cord-269150-d1sgnxc0 10 2 RNA RNA NNP cord-269150-d1sgnxc0 10 3 - - HYPH cord-269150-d1sgnxc0 10 4 binding bind VBG cord-269150-d1sgnxc0 10 5 domain domain NN cord-269150-d1sgnxc0 10 6 was be VBD cord-269150-d1sgnxc0 10 7 mapped map VBN cord-269150-d1sgnxc0 10 8 to to IN cord-269150-d1sgnxc0 10 9 the the DT cord-269150-d1sgnxc0 10 10 N n CD cord-269150-d1sgnxc0 10 11 - - HYPH cord-269150-d1sgnxc0 10 12 terminal terminal JJ cord-269150-d1sgnxc0 10 13 region region NN cord-269150-d1sgnxc0 10 14 of of IN cord-269150-d1sgnxc0 10 15 MADP1 MADP1 NNP cord-269150-d1sgnxc0 10 16 and and CC cord-269150-d1sgnxc0 10 17 the the DT cord-269150-d1sgnxc0 10 18 protein protein NN cord-269150-d1sgnxc0 10 19 binding bind VBG cord-269150-d1sgnxc0 10 20 sequence sequence NN cord-269150-d1sgnxc0 10 21 to to TO cord-269150-d1sgnxc0 10 22 stem stem VB cord-269150-d1sgnxc0 10 23 – – : cord-269150-d1sgnxc0 10 24 loop loop NN cord-269150-d1sgnxc0 10 25 I -PRON- PRP cord-269150-d1sgnxc0 10 26 of of IN cord-269150-d1sgnxc0 10 27 IBV IBV NNP cord-269150-d1sgnxc0 10 28 5′-UTR 5′-utr CD cord-269150-d1sgnxc0 10 29 . . . cord-269150-d1sgnxc0 11 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 11 2 was be VBD cord-269150-d1sgnxc0 11 3 found find VBN cord-269150-d1sgnxc0 11 4 to to TO cord-269150-d1sgnxc0 11 5 be be VB cord-269150-d1sgnxc0 11 6 translocated translocate VBN cord-269150-d1sgnxc0 11 7 to to IN cord-269150-d1sgnxc0 11 8 the the DT cord-269150-d1sgnxc0 11 9 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 11 10 and and CC cord-269150-d1sgnxc0 11 11 partially partially RB cord-269150-d1sgnxc0 11 12 co co JJ cord-269150-d1sgnxc0 11 13 - - VBN cord-269150-d1sgnxc0 11 14 localized localize VBN cord-269150-d1sgnxc0 11 15 with with IN cord-269150-d1sgnxc0 11 16 the the DT cord-269150-d1sgnxc0 11 17 viral viral JJ cord-269150-d1sgnxc0 11 18 replicase replicase NN cord-269150-d1sgnxc0 11 19 / / SYM cord-269150-d1sgnxc0 11 20 transcriptase transcriptase NN cord-269150-d1sgnxc0 11 21 complexes complex NNS cord-269150-d1sgnxc0 11 22 ( ( -LRB- cord-269150-d1sgnxc0 11 23 RTCs RTCs NNP cord-269150-d1sgnxc0 11 24 ) ) -RRB- cord-269150-d1sgnxc0 11 25 in in IN cord-269150-d1sgnxc0 11 26 IBV IBV NNP cord-269150-d1sgnxc0 11 27 - - HYPH cord-269150-d1sgnxc0 11 28 infected infect VBN cord-269150-d1sgnxc0 11 29 cells cell NNS cord-269150-d1sgnxc0 11 30 , , , cord-269150-d1sgnxc0 11 31 deviating deviate VBG cord-269150-d1sgnxc0 11 32 from from IN cord-269150-d1sgnxc0 11 33 its -PRON- PRP$ cord-269150-d1sgnxc0 11 34 usual usual JJ cord-269150-d1sgnxc0 11 35 nuclear nuclear JJ cord-269150-d1sgnxc0 11 36 localization localization NN cord-269150-d1sgnxc0 11 37 in in IN cord-269150-d1sgnxc0 11 38 a a DT cord-269150-d1sgnxc0 11 39 normal normal JJ cord-269150-d1sgnxc0 11 40 cell cell NN cord-269150-d1sgnxc0 11 41 using use VBG cord-269150-d1sgnxc0 11 42 indirect indirect JJ cord-269150-d1sgnxc0 11 43 immunofluorescence immunofluorescence NN cord-269150-d1sgnxc0 11 44 . . . cord-269150-d1sgnxc0 12 1 Using use VBG cord-269150-d1sgnxc0 12 2 small small JJ cord-269150-d1sgnxc0 12 3 interfering interfere VBG cord-269150-d1sgnxc0 12 4 RNA RNA NNP cord-269150-d1sgnxc0 12 5 ( ( -LRB- cord-269150-d1sgnxc0 12 6 siRNA siRNA NNP cord-269150-d1sgnxc0 12 7 ) ) -RRB- cord-269150-d1sgnxc0 12 8 against against IN cord-269150-d1sgnxc0 12 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 12 10 , , , cord-269150-d1sgnxc0 12 11 defective defective JJ cord-269150-d1sgnxc0 12 12 viral viral JJ cord-269150-d1sgnxc0 12 13 RNA RNA NNP cord-269150-d1sgnxc0 12 14 synthesis synthesis NN cord-269150-d1sgnxc0 12 15 was be VBD cord-269150-d1sgnxc0 12 16 observed observe VBN cord-269150-d1sgnxc0 12 17 in in IN cord-269150-d1sgnxc0 12 18 the the DT cord-269150-d1sgnxc0 12 19 knockdown knockdown NN cord-269150-d1sgnxc0 12 20 cells cell NNS cord-269150-d1sgnxc0 12 21 , , , cord-269150-d1sgnxc0 12 22 therefore therefore RB cord-269150-d1sgnxc0 12 23 indicating indicate VBG cord-269150-d1sgnxc0 12 24 the the DT cord-269150-d1sgnxc0 12 25 importance importance NN cord-269150-d1sgnxc0 12 26 of of IN cord-269150-d1sgnxc0 12 27 the the DT cord-269150-d1sgnxc0 12 28 protein protein NN cord-269150-d1sgnxc0 12 29 in in IN cord-269150-d1sgnxc0 12 30 coronaviral coronaviral NNP cord-269150-d1sgnxc0 12 31 RNA RNA NNP cord-269150-d1sgnxc0 12 32 synthesis synthesis NN cord-269150-d1sgnxc0 12 33 . . . cord-269150-d1sgnxc0 13 1 During during IN cord-269150-d1sgnxc0 13 2 the the DT cord-269150-d1sgnxc0 13 3 replication replication NN cord-269150-d1sgnxc0 13 4 of of IN cord-269150-d1sgnxc0 13 5 mammalian mammalian JJ cord-269150-d1sgnxc0 13 6 viruses virus NNS cord-269150-d1sgnxc0 13 7 , , , cord-269150-d1sgnxc0 13 8 it -PRON- PRP cord-269150-d1sgnxc0 13 9 is be VBZ cord-269150-d1sgnxc0 13 10 inevitable inevitable JJ cord-269150-d1sgnxc0 13 11 for for IN cord-269150-d1sgnxc0 13 12 host host NN cord-269150-d1sgnxc0 13 13 proteins protein NNS cord-269150-d1sgnxc0 13 14 to to TO cord-269150-d1sgnxc0 13 15 be be VB cord-269150-d1sgnxc0 13 16 involved involve VBN cord-269150-d1sgnxc0 13 17 in in IN cord-269150-d1sgnxc0 13 18 the the DT cord-269150-d1sgnxc0 13 19 viral viral JJ cord-269150-d1sgnxc0 13 20 life life NN cord-269150-d1sgnxc0 13 21 cycles cycle NNS cord-269150-d1sgnxc0 13 22 . . . cord-269150-d1sgnxc0 14 1 In in IN cord-269150-d1sgnxc0 14 2 fact fact NN cord-269150-d1sgnxc0 14 3 , , , cord-269150-d1sgnxc0 14 4 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 14 5 require require VBP cord-269150-d1sgnxc0 14 6 host host NN cord-269150-d1sgnxc0 14 7 proteins protein NNS cord-269150-d1sgnxc0 14 8 to to TO cord-269150-d1sgnxc0 14 9 aid aid VB cord-269150-d1sgnxc0 14 10 in in IN cord-269150-d1sgnxc0 14 11 the the DT cord-269150-d1sgnxc0 14 12 stages stage NNS cord-269150-d1sgnxc0 14 13 from from IN cord-269150-d1sgnxc0 14 14 virus virus NN cord-269150-d1sgnxc0 14 15 entry entry NN cord-269150-d1sgnxc0 14 16 to to IN cord-269150-d1sgnxc0 14 17 progeny progeny JJ cord-269150-d1sgnxc0 14 18 release release NN cord-269150-d1sgnxc0 14 19 . . . cord-269150-d1sgnxc0 15 1 Entry entry NN cord-269150-d1sgnxc0 15 2 of of IN cord-269150-d1sgnxc0 15 3 the the DT cord-269150-d1sgnxc0 15 4 virus virus NN cord-269150-d1sgnxc0 15 5 particle particle NN cord-269150-d1sgnxc0 15 6 into into IN cord-269150-d1sgnxc0 15 7 a a DT cord-269150-d1sgnxc0 15 8 host host NN cord-269150-d1sgnxc0 15 9 cell cell NN cord-269150-d1sgnxc0 15 10 requires require VBZ cord-269150-d1sgnxc0 15 11 the the DT cord-269150-d1sgnxc0 15 12 recognition recognition NN cord-269150-d1sgnxc0 15 13 of of IN cord-269150-d1sgnxc0 15 14 specific specific JJ cord-269150-d1sgnxc0 15 15 cell cell NN cord-269150-d1sgnxc0 15 16 surface surface NN cord-269150-d1sgnxc0 15 17 proteins protein NNS cord-269150-d1sgnxc0 15 18 , , , cord-269150-d1sgnxc0 15 19 which which WDT cord-269150-d1sgnxc0 15 20 act act VBP cord-269150-d1sgnxc0 15 21 as as IN cord-269150-d1sgnxc0 15 22 receptors receptor NNS cord-269150-d1sgnxc0 15 23 for for IN cord-269150-d1sgnxc0 15 24 the the DT cord-269150-d1sgnxc0 15 25 virus virus NN cord-269150-d1sgnxc0 15 26 spike spike NN cord-269150-d1sgnxc0 15 27 ( ( -LRB- cord-269150-d1sgnxc0 15 28 S s NN cord-269150-d1sgnxc0 15 29 ) ) -RRB- cord-269150-d1sgnxc0 15 30 protein protein NN cord-269150-d1sgnxc0 15 31 ( ( -LRB- cord-269150-d1sgnxc0 15 32 1 1 CD cord-269150-d1sgnxc0 15 33 ) ) -RRB- cord-269150-d1sgnxc0 15 34 ( ( -LRB- cord-269150-d1sgnxc0 15 35 2 2 LS cord-269150-d1sgnxc0 15 36 ) ) -RRB- cord-269150-d1sgnxc0 15 37 ( ( -LRB- cord-269150-d1sgnxc0 15 38 3 3 LS cord-269150-d1sgnxc0 15 39 ) ) -RRB- cord-269150-d1sgnxc0 15 40 ( ( -LRB- cord-269150-d1sgnxc0 15 41 4 4 LS cord-269150-d1sgnxc0 15 42 ) ) -RRB- cord-269150-d1sgnxc0 15 43 ( ( -LRB- cord-269150-d1sgnxc0 15 44 5 5 LS cord-269150-d1sgnxc0 15 45 ) ) -RRB- cord-269150-d1sgnxc0 15 46 ( ( -LRB- cord-269150-d1sgnxc0 15 47 6 6 CD cord-269150-d1sgnxc0 15 48 ) ) -RRB- cord-269150-d1sgnxc0 15 49 . . . cord-269150-d1sgnxc0 16 1 Upon upon IN cord-269150-d1sgnxc0 16 2 entry entry NN cord-269150-d1sgnxc0 16 3 into into IN cord-269150-d1sgnxc0 16 4 host host NN cord-269150-d1sgnxc0 16 5 cells cell NNS cord-269150-d1sgnxc0 16 6 , , , cord-269150-d1sgnxc0 16 7 the the DT cord-269150-d1sgnxc0 16 8 ribonucleocapsid ribonucleocapsid NNP cord-269150-d1sgnxc0 16 9 uncoats uncoats NNP cord-269150-d1sgnxc0 16 10 and and CC cord-269150-d1sgnxc0 16 11 releases release VBZ cord-269150-d1sgnxc0 16 12 the the DT cord-269150-d1sgnxc0 16 13 5 5 CD cord-269150-d1sgnxc0 16 14 0 0 CD cord-269150-d1sgnxc0 16 15 -capped -capped CD cord-269150-d1sgnxc0 16 16 viral viral JJ cord-269150-d1sgnxc0 16 17 genome genome NN cord-269150-d1sgnxc0 16 18 , , , cord-269150-d1sgnxc0 16 19 a a DT cord-269150-d1sgnxc0 16 20 single single RB cord-269150-d1sgnxc0 16 21 - - HYPH cord-269150-d1sgnxc0 16 22 stranded strand VBN cord-269150-d1sgnxc0 16 23 positive positive JJ cord-269150-d1sgnxc0 16 24 - - HYPH cord-269150-d1sgnxc0 16 25 sense sense NN cord-269150-d1sgnxc0 16 26 RNA RNA NNP cord-269150-d1sgnxc0 16 27 . . . cord-269150-d1sgnxc0 17 1 The the DT cord-269150-d1sgnxc0 17 2 genomic genomic JJ cord-269150-d1sgnxc0 17 3 RNA rna NN cord-269150-d1sgnxc0 17 4 ranges range VBZ cord-269150-d1sgnxc0 17 5 from from IN cord-269150-d1sgnxc0 17 6 27 27 CD cord-269150-d1sgnxc0 17 7 to to TO cord-269150-d1sgnxc0 17 8 32 32 CD cord-269150-d1sgnxc0 17 9 kb kb NNS cord-269150-d1sgnxc0 17 10 in in IN cord-269150-d1sgnxc0 17 11 length length NN cord-269150-d1sgnxc0 17 12 , , , cord-269150-d1sgnxc0 17 13 is be VBZ cord-269150-d1sgnxc0 17 14 the the DT cord-269150-d1sgnxc0 17 15 largest large JJS cord-269150-d1sgnxc0 17 16 known know VBN cord-269150-d1sgnxc0 17 17 of of IN cord-269150-d1sgnxc0 17 18 its -PRON- PRP$ cord-269150-d1sgnxc0 17 19 kind kind NN cord-269150-d1sgnxc0 17 20 and and CC cord-269150-d1sgnxc0 17 21 is be VBZ cord-269150-d1sgnxc0 17 22 structurally structurally RB cord-269150-d1sgnxc0 17 23 similar similar JJ cord-269150-d1sgnxc0 17 24 to to TO cord-269150-d1sgnxc0 17 25 host host VB cord-269150-d1sgnxc0 17 26 mRNA mRNA NNP cord-269150-d1sgnxc0 17 27 ( ( -LRB- cord-269150-d1sgnxc0 17 28 7 7 CD cord-269150-d1sgnxc0 17 29 ) ) -RRB- cord-269150-d1sgnxc0 17 30 . . . cord-269150-d1sgnxc0 18 1 The the DT cord-269150-d1sgnxc0 18 2 replicase replicase NN cord-269150-d1sgnxc0 18 3 gene gene NN cord-269150-d1sgnxc0 18 4 , , , cord-269150-d1sgnxc0 18 5 which which WDT cord-269150-d1sgnxc0 18 6 spans span VBZ cord-269150-d1sgnxc0 18 7 the the DT cord-269150-d1sgnxc0 18 8 5 5 CD cord-269150-d1sgnxc0 18 9 0 0 CD cord-269150-d1sgnxc0 18 10 two two CD cord-269150-d1sgnxc0 18 11 - - HYPH cord-269150-d1sgnxc0 18 12 thirds third NNS cord-269150-d1sgnxc0 18 13 of of IN cord-269150-d1sgnxc0 18 14 the the DT cord-269150-d1sgnxc0 18 15 genome genome NN cord-269150-d1sgnxc0 18 16 , , , cord-269150-d1sgnxc0 18 17 is be VBZ cord-269150-d1sgnxc0 18 18 translated translate VBN cord-269150-d1sgnxc0 18 19 by by IN cord-269150-d1sgnxc0 18 20 host host NN cord-269150-d1sgnxc0 18 21 ribosomes ribosome NNS cord-269150-d1sgnxc0 18 22 into into IN cord-269150-d1sgnxc0 18 23 two two CD cord-269150-d1sgnxc0 18 24 large large JJ cord-269150-d1sgnxc0 18 25 polyproteins polyprotein NNS cord-269150-d1sgnxc0 18 26 , , , cord-269150-d1sgnxc0 18 27 pp1a pp1a NNP cord-269150-d1sgnxc0 18 28 and and CC cord-269150-d1sgnxc0 18 29 pp1ab pp1ab NNP cord-269150-d1sgnxc0 18 30 via via IN cord-269150-d1sgnxc0 18 31 a a DT cord-269150-d1sgnxc0 18 32 frameshift frameshift NN cord-269150-d1sgnxc0 18 33 event event NN cord-269150-d1sgnxc0 18 34 ( ( -LRB- cord-269150-d1sgnxc0 18 35 8) 8) NNP cord-269150-d1sgnxc0 18 36 ( ( -LRB- cord-269150-d1sgnxc0 18 37 9 9 CD cord-269150-d1sgnxc0 18 38 ) ) -RRB- cord-269150-d1sgnxc0 18 39 ( ( -LRB- cord-269150-d1sgnxc0 18 40 10 10 CD cord-269150-d1sgnxc0 18 41 ) ) -RRB- cord-269150-d1sgnxc0 18 42 . . . cord-269150-d1sgnxc0 19 1 The the DT cord-269150-d1sgnxc0 19 2 polyproteins polyprotein NNS cord-269150-d1sgnxc0 19 3 are be VBP cord-269150-d1sgnxc0 19 4 autoproteolytically autoproteolytically RB cord-269150-d1sgnxc0 19 5 processed process VBN cord-269150-d1sgnxc0 19 6 into into IN cord-269150-d1sgnxc0 19 7 a a DT cord-269150-d1sgnxc0 19 8 maximum maximum NN cord-269150-d1sgnxc0 19 9 of of IN cord-269150-d1sgnxc0 19 10 16 16 CD cord-269150-d1sgnxc0 19 11 nonstructural nonstructural JJ cord-269150-d1sgnxc0 19 12 proteins protein NNS cord-269150-d1sgnxc0 19 13 ( ( -LRB- cord-269150-d1sgnxc0 19 14 8 8 CD cord-269150-d1sgnxc0 19 15 , , , cord-269150-d1sgnxc0 19 16 ( ( -LRB- cord-269150-d1sgnxc0 19 17 11 11 CD cord-269150-d1sgnxc0 19 18 ) ) -RRB- cord-269150-d1sgnxc0 19 19 ( ( -LRB- cord-269150-d1sgnxc0 19 20 12 12 CD cord-269150-d1sgnxc0 19 21 ) ) -RRB- cord-269150-d1sgnxc0 19 22 ( ( -LRB- cord-269150-d1sgnxc0 19 23 13 13 CD cord-269150-d1sgnxc0 19 24 ) ) -RRB- cord-269150-d1sgnxc0 19 25 ( ( -LRB- cord-269150-d1sgnxc0 19 26 14 14 CD cord-269150-d1sgnxc0 19 27 ) ) -RRB- cord-269150-d1sgnxc0 19 28 ( ( -LRB- cord-269150-d1sgnxc0 19 29 15 15 CD cord-269150-d1sgnxc0 19 30 ) ) -RRB- cord-269150-d1sgnxc0 19 31 ( ( -LRB- cord-269150-d1sgnxc0 19 32 16 16 CD cord-269150-d1sgnxc0 19 33 ) ) -RRB- cord-269150-d1sgnxc0 19 34 , , , cord-269150-d1sgnxc0 19 35 which which WDT cord-269150-d1sgnxc0 19 36 are be VBP cord-269150-d1sgnxc0 19 37 assembled assemble VBN cord-269150-d1sgnxc0 19 38 into into IN cord-269150-d1sgnxc0 19 39 replicationtranscription replicationtranscription NN cord-269150-d1sgnxc0 19 40 complexes complex NNS cord-269150-d1sgnxc0 19 41 , , , cord-269150-d1sgnxc0 19 42 including include VBG cord-269150-d1sgnxc0 19 43 the the DT cord-269150-d1sgnxc0 19 44 main main JJ cord-269150-d1sgnxc0 19 45 enzyme enzyme NN cord-269150-d1sgnxc0 19 46 RNA rna NN cord-269150-d1sgnxc0 19 47 - - HYPH cord-269150-d1sgnxc0 19 48 dependent dependent JJ cord-269150-d1sgnxc0 19 49 RNA RNA NNP cord-269150-d1sgnxc0 19 50 polymerase polymerase NN cord-269150-d1sgnxc0 19 51 ( ( -LRB- cord-269150-d1sgnxc0 19 52 nsp12 nsp12 CD cord-269150-d1sgnxc0 19 53 ) ) -RRB- cord-269150-d1sgnxc0 19 54 ( ( -LRB- cord-269150-d1sgnxc0 19 55 17 17 CD cord-269150-d1sgnxc0 19 56 , , , cord-269150-d1sgnxc0 19 57 18 18 CD cord-269150-d1sgnxc0 19 58 ) ) -RRB- cord-269150-d1sgnxc0 19 59 . . . cord-269150-d1sgnxc0 20 1 This this DT cord-269150-d1sgnxc0 20 2 complex complex NN cord-269150-d1sgnxc0 20 3 is be VBZ cord-269150-d1sgnxc0 20 4 required require VBN cord-269150-d1sgnxc0 20 5 for for IN cord-269150-d1sgnxc0 20 6 generating generate VBG cord-269150-d1sgnxc0 20 7 new new JJ cord-269150-d1sgnxc0 20 8 full full JJ cord-269150-d1sgnxc0 20 9 - - HYPH cord-269150-d1sgnxc0 20 10 length length NN cord-269150-d1sgnxc0 20 11 virus virus NN cord-269150-d1sgnxc0 20 12 RNA rna NN cord-269150-d1sgnxc0 20 13 in in IN cord-269150-d1sgnxc0 20 14 replication replication NN cord-269150-d1sgnxc0 20 15 as as RB cord-269150-d1sgnxc0 20 16 well well RB cord-269150-d1sgnxc0 20 17 as as IN cord-269150-d1sgnxc0 20 18 subgenome subgenome NN cord-269150-d1sgnxc0 20 19 - - HYPH cord-269150-d1sgnxc0 20 20 length length NN cord-269150-d1sgnxc0 20 21 RNAs rna NNS cord-269150-d1sgnxc0 20 22 to to TO cord-269150-d1sgnxc0 20 23 be be VB cord-269150-d1sgnxc0 20 24 used use VBN cord-269150-d1sgnxc0 20 25 for for IN cord-269150-d1sgnxc0 20 26 translation translation NN cord-269150-d1sgnxc0 20 27 of of IN cord-269150-d1sgnxc0 20 28 virus virus NN cord-269150-d1sgnxc0 20 29 structural structural JJ cord-269150-d1sgnxc0 20 30 and and CC cord-269150-d1sgnxc0 20 31 accessory accessory NN cord-269150-d1sgnxc0 20 32 proteins protein NNS cord-269150-d1sgnxc0 20 33 . . . cord-269150-d1sgnxc0 21 1 In in IN cord-269150-d1sgnxc0 21 2 addition addition NN cord-269150-d1sgnxc0 21 3 to to IN cord-269150-d1sgnxc0 21 4 their -PRON- PRP$ cord-269150-d1sgnxc0 21 5 role role NN cord-269150-d1sgnxc0 21 6 in in IN cord-269150-d1sgnxc0 21 7 RNA RNA NNP cord-269150-d1sgnxc0 21 8 synthesis synthesis NN cord-269150-d1sgnxc0 21 9 , , , cord-269150-d1sgnxc0 21 10 these these DT cord-269150-d1sgnxc0 21 11 nonstructural nonstructural JJ cord-269150-d1sgnxc0 21 12 proteins protein NNS cord-269150-d1sgnxc0 21 13 may may MD cord-269150-d1sgnxc0 21 14 have have VB cord-269150-d1sgnxc0 21 15 multiple multiple JJ cord-269150-d1sgnxc0 21 16 functions function NNS cord-269150-d1sgnxc0 21 17 , , , cord-269150-d1sgnxc0 21 18 such such JJ cord-269150-d1sgnxc0 21 19 as as IN cord-269150-d1sgnxc0 21 20 the the DT cord-269150-d1sgnxc0 21 21 suppression suppression NN cord-269150-d1sgnxc0 21 22 of of IN cord-269150-d1sgnxc0 21 23 host host NN cord-269150-d1sgnxc0 21 24 mRNA mRNA NNP cord-269150-d1sgnxc0 21 25 translation translation NN cord-269150-d1sgnxc0 21 26 as as RB cord-269150-d1sgnxc0 21 27 well well RB cord-269150-d1sgnxc0 21 28 as as IN cord-269150-d1sgnxc0 21 29 mRNA mrna NN cord-269150-d1sgnxc0 21 30 degradation degradation NN cord-269150-d1sgnxc0 21 31 by by IN cord-269150-d1sgnxc0 21 32 nsp1 nsp1 NNS cord-269150-d1sgnxc0 21 33 of of IN cord-269150-d1sgnxc0 21 34 SARS SARS NNP cord-269150-d1sgnxc0 21 35 coronavirus coronavirus NN cord-269150-d1sgnxc0 21 36 ( ( -LRB- cord-269150-d1sgnxc0 21 37 SARS SARS NNP cord-269150-d1sgnxc0 21 38 - - HYPH cord-269150-d1sgnxc0 21 39 CoV CoV NNP cord-269150-d1sgnxc0 21 40 ; ; : cord-269150-d1sgnxc0 21 41 [ [ -LRB- cord-269150-d1sgnxc0 21 42 19 19 CD cord-269150-d1sgnxc0 21 43 ] ] -RRB- cord-269150-d1sgnxc0 21 44 [ [ -LRB- cord-269150-d1sgnxc0 21 45 20 20 CD cord-269150-d1sgnxc0 21 46 ] ] -RRB- cord-269150-d1sgnxc0 21 47 [ [ -LRB- cord-269150-d1sgnxc0 21 48 21 21 CD cord-269150-d1sgnxc0 21 49 ] ] -RRB- cord-269150-d1sgnxc0 21 50 , , , cord-269150-d1sgnxc0 21 51 which which WDT cord-269150-d1sgnxc0 21 52 may may MD cord-269150-d1sgnxc0 21 53 play play VB cord-269150-d1sgnxc0 21 54 a a DT cord-269150-d1sgnxc0 21 55 role role NN cord-269150-d1sgnxc0 21 56 in in IN cord-269150-d1sgnxc0 21 57 the the DT cord-269150-d1sgnxc0 21 58 suppression suppression NN cord-269150-d1sgnxc0 21 59 of of IN cord-269150-d1sgnxc0 21 60 immune immune JJ cord-269150-d1sgnxc0 21 61 response response NN cord-269150-d1sgnxc0 21 62 mounted mount VBN cord-269150-d1sgnxc0 21 63 by by IN cord-269150-d1sgnxc0 21 64 the the DT cord-269150-d1sgnxc0 21 65 host host NN cord-269150-d1sgnxc0 21 66 upon upon IN cord-269150-d1sgnxc0 21 67 infection infection NN cord-269150-d1sgnxc0 21 68 . . . cord-269150-d1sgnxc0 22 1 The the DT cord-269150-d1sgnxc0 22 2 replication replication NN cord-269150-d1sgnxc0 22 3 - - HYPH cord-269150-d1sgnxc0 22 4 transcription transcription NN cord-269150-d1sgnxc0 22 5 complex complex NN cord-269150-d1sgnxc0 22 6 ( ( -LRB- cord-269150-d1sgnxc0 22 7 RTC RTC NNP cord-269150-d1sgnxc0 22 8 ) ) -RRB- cord-269150-d1sgnxc0 22 9 , , , cord-269150-d1sgnxc0 22 10 which which WDT cord-269150-d1sgnxc0 22 11 is be VBZ cord-269150-d1sgnxc0 22 12 located locate VBN cord-269150-d1sgnxc0 22 13 on on IN cord-269150-d1sgnxc0 22 14 membrane membrane NN cord-269150-d1sgnxc0 22 15 bound bind VBN cord-269150-d1sgnxc0 22 16 vesicles vesicle NNS cord-269150-d1sgnxc0 22 17 in in IN cord-269150-d1sgnxc0 22 18 the the DT cord-269150-d1sgnxc0 22 19 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 22 20 ( ( -LRB- cord-269150-d1sgnxc0 22 21 22 22 CD cord-269150-d1sgnxc0 22 22 ) ) -RRB- cord-269150-d1sgnxc0 22 23 , , , cord-269150-d1sgnxc0 22 24 is be VBZ cord-269150-d1sgnxc0 22 25 required require VBN cord-269150-d1sgnxc0 22 26 for for IN cord-269150-d1sgnxc0 22 27 genome genome NN cord-269150-d1sgnxc0 22 28 replication replication NN cord-269150-d1sgnxc0 22 29 through through IN cord-269150-d1sgnxc0 22 30 continuous continuous JJ cord-269150-d1sgnxc0 22 31 transcription transcription NN cord-269150-d1sgnxc0 22 32 and and CC cord-269150-d1sgnxc0 22 33 subgenomic subgenomic NNP cord-269150-d1sgnxc0 22 34 RNA RNA NNP cord-269150-d1sgnxc0 22 35 synthesis synthesis NN cord-269150-d1sgnxc0 22 36 via via IN cord-269150-d1sgnxc0 22 37 discontinuous discontinuous JJ cord-269150-d1sgnxc0 22 38 transcription transcription NN cord-269150-d1sgnxc0 22 39 ( ( -LRB- cord-269150-d1sgnxc0 22 40 18 18 CD cord-269150-d1sgnxc0 22 41 , , , cord-269150-d1sgnxc0 22 42 23 23 CD cord-269150-d1sgnxc0 22 43 , , , cord-269150-d1sgnxc0 22 44 24 24 CD cord-269150-d1sgnxc0 22 45 ) ) -RRB- cord-269150-d1sgnxc0 22 46 . . . cord-269150-d1sgnxc0 23 1 Apart apart RB cord-269150-d1sgnxc0 23 2 from from IN cord-269150-d1sgnxc0 23 3 the the DT cord-269150-d1sgnxc0 23 4 replicase replicase NN cord-269150-d1sgnxc0 23 5 gene gene NN cord-269150-d1sgnxc0 23 6 products product NNS cord-269150-d1sgnxc0 23 7 , , , cord-269150-d1sgnxc0 23 8 a a DT cord-269150-d1sgnxc0 23 9 viral viral JJ cord-269150-d1sgnxc0 23 10 structural structural JJ cord-269150-d1sgnxc0 23 11 protein protein NN cord-269150-d1sgnxc0 23 12 , , , cord-269150-d1sgnxc0 23 13 the the DT cord-269150-d1sgnxc0 23 14 nucleocapsid nucleocapsid NN cord-269150-d1sgnxc0 23 15 ( ( -LRB- cord-269150-d1sgnxc0 23 16 N N NNP cord-269150-d1sgnxc0 23 17 ) ) -RRB- cord-269150-d1sgnxc0 23 18 , , , cord-269150-d1sgnxc0 23 19 is be VBZ cord-269150-d1sgnxc0 23 20 also also RB cord-269150-d1sgnxc0 23 21 required require VBN cord-269150-d1sgnxc0 23 22 for for IN cord-269150-d1sgnxc0 23 23 efficient efficient JJ cord-269150-d1sgnxc0 23 24 viral viral JJ cord-269150-d1sgnxc0 23 25 RNA RNA NNP cord-269150-d1sgnxc0 23 26 synthesis synthesis NN cord-269150-d1sgnxc0 23 27 ( ( -LRB- cord-269150-d1sgnxc0 23 28 25 25 CD cord-269150-d1sgnxc0 23 29 , , , cord-269150-d1sgnxc0 23 30 26 26 CD cord-269150-d1sgnxc0 23 31 ) ) -RRB- cord-269150-d1sgnxc0 23 32 . . . cord-269150-d1sgnxc0 24 1 The the DT cord-269150-d1sgnxc0 24 2 resulting result VBG cord-269150-d1sgnxc0 24 3 genome genome NN cord-269150-d1sgnxc0 24 4 - - HYPH cord-269150-d1sgnxc0 24 5 size size NN cord-269150-d1sgnxc0 24 6 transcripts transcript NNS cord-269150-d1sgnxc0 24 7 are be VBP cord-269150-d1sgnxc0 24 8 destined destine VBN cord-269150-d1sgnxc0 24 9 to to TO cord-269150-d1sgnxc0 24 10 be be VB cord-269150-d1sgnxc0 24 11 packaged package VBN cord-269150-d1sgnxc0 24 12 into into IN cord-269150-d1sgnxc0 24 13 progeny progeny JJ cord-269150-d1sgnxc0 24 14 virions virion NNS cord-269150-d1sgnxc0 24 15 while while IN cord-269150-d1sgnxc0 24 16 the the DT cord-269150-d1sgnxc0 24 17 subgenomic subgenomic NNP cord-269150-d1sgnxc0 24 18 , , , cord-269150-d1sgnxc0 24 19 positive positive JJ cord-269150-d1sgnxc0 24 20 - - HYPH cord-269150-d1sgnxc0 24 21 sense sense NN cord-269150-d1sgnxc0 24 22 transcripts transcript NNS cord-269150-d1sgnxc0 24 23 are be VBP cord-269150-d1sgnxc0 24 24 being be VBG cord-269150-d1sgnxc0 24 25 translated translate VBN cord-269150-d1sgnxc0 24 26 into into IN cord-269150-d1sgnxc0 24 27 four four CD cord-269150-d1sgnxc0 24 28 structural structural JJ cord-269150-d1sgnxc0 24 29 proteins protein NNS cord-269150-d1sgnxc0 24 30 , , , cord-269150-d1sgnxc0 24 31 spike spike NN cord-269150-d1sgnxc0 24 32 ( ( -LRB- cord-269150-d1sgnxc0 24 33 S S NNP cord-269150-d1sgnxc0 24 34 ) ) -RRB- cord-269150-d1sgnxc0 24 35 , , , cord-269150-d1sgnxc0 24 36 nucleocapsid nucleocapsid NN cord-269150-d1sgnxc0 24 37 ( ( -LRB- cord-269150-d1sgnxc0 24 38 N N NNP cord-269150-d1sgnxc0 24 39 ) ) -RRB- cord-269150-d1sgnxc0 24 40 , , , cord-269150-d1sgnxc0 24 41 membrane membrane NN cord-269150-d1sgnxc0 24 42 ( ( -LRB- cord-269150-d1sgnxc0 24 43 M M NNP cord-269150-d1sgnxc0 24 44 ) ) -RRB- cord-269150-d1sgnxc0 24 45 and and CC cord-269150-d1sgnxc0 24 46 envelope envelope NN cord-269150-d1sgnxc0 24 47 ( ( -LRB- cord-269150-d1sgnxc0 24 48 E e NN cord-269150-d1sgnxc0 24 49 ) ) -RRB- cord-269150-d1sgnxc0 24 50 proteins protein NNS cord-269150-d1sgnxc0 24 51 , , , cord-269150-d1sgnxc0 24 52 as as RB cord-269150-d1sgnxc0 24 53 well well RB cord-269150-d1sgnxc0 24 54 as as IN cord-269150-d1sgnxc0 24 55 other other JJ cord-269150-d1sgnxc0 24 56 accessory accessory NN cord-269150-d1sgnxc0 24 57 proteins protein NNS cord-269150-d1sgnxc0 24 58 . . . cord-269150-d1sgnxc0 25 1 In in IN cord-269150-d1sgnxc0 25 2 virus virus NN cord-269150-d1sgnxc0 25 3 RNA RNA NNP cord-269150-d1sgnxc0 25 4 synthesis synthesis NN cord-269150-d1sgnxc0 25 5 , , , cord-269150-d1sgnxc0 25 6 the the DT cord-269150-d1sgnxc0 25 7 replicase replicase NN cord-269150-d1sgnxc0 25 8 complex complex NN cord-269150-d1sgnxc0 25 9 is be VBZ cord-269150-d1sgnxc0 25 10 indispensable indispensable JJ cord-269150-d1sgnxc0 25 11 but but CC cord-269150-d1sgnxc0 25 12 not not RB cord-269150-d1sgnxc0 25 13 an an DT cord-269150-d1sgnxc0 25 14 exclusive exclusive JJ cord-269150-d1sgnxc0 25 15 participant participant NN cord-269150-d1sgnxc0 25 16 . . . cord-269150-d1sgnxc0 26 1 Several several JJ cord-269150-d1sgnxc0 26 2 host host NN cord-269150-d1sgnxc0 26 3 proteins protein NNS cord-269150-d1sgnxc0 26 4 have have VBP cord-269150-d1sgnxc0 26 5 been be VBN cord-269150-d1sgnxc0 26 6 identified identify VBN cord-269150-d1sgnxc0 26 7 to to TO cord-269150-d1sgnxc0 26 8 be be VB cord-269150-d1sgnxc0 26 9 able able JJ cord-269150-d1sgnxc0 26 10 to to TO cord-269150-d1sgnxc0 26 11 interact interact VB cord-269150-d1sgnxc0 26 12 with with IN cord-269150-d1sgnxc0 26 13 regulatory regulatory JJ cord-269150-d1sgnxc0 26 14 signals signal NNS cord-269150-d1sgnxc0 26 15 within within IN cord-269150-d1sgnxc0 26 16 the the DT cord-269150-d1sgnxc0 26 17 untranslated untranslated JJ cord-269150-d1sgnxc0 26 18 regions region NNS cord-269150-d1sgnxc0 26 19 in in IN cord-269150-d1sgnxc0 26 20 the the DT cord-269150-d1sgnxc0 26 21 viral viral JJ cord-269150-d1sgnxc0 26 22 genome genome NN cord-269150-d1sgnxc0 26 23 of of IN cord-269150-d1sgnxc0 26 24 betacoronavirus betacoronavirus NNP cord-269150-d1sgnxc0 26 25 MHV MHV NNP cord-269150-d1sgnxc0 26 26 . . . cord-269150-d1sgnxc0 27 1 These these DT cord-269150-d1sgnxc0 27 2 include include VBP cord-269150-d1sgnxc0 27 3 the the DT cord-269150-d1sgnxc0 27 4 polypyrimidine polypyrimidine JJ cord-269150-d1sgnxc0 27 5 tract tract NN cord-269150-d1sgnxc0 27 6 - - HYPH cord-269150-d1sgnxc0 27 7 binding bind VBG cord-269150-d1sgnxc0 27 8 protein protein NN cord-269150-d1sgnxc0 27 9 ( ( -LRB- cord-269150-d1sgnxc0 27 10 PTB PTB NNP cord-269150-d1sgnxc0 27 11 ) ) -RRB- cord-269150-d1sgnxc0 27 12 ( ( -LRB- cord-269150-d1sgnxc0 27 13 27 27 CD cord-269150-d1sgnxc0 27 14 , , , cord-269150-d1sgnxc0 27 15 28 28 CD cord-269150-d1sgnxc0 27 16 ) ) -RRB- cord-269150-d1sgnxc0 27 17 with with IN cord-269150-d1sgnxc0 27 18 the the DT cord-269150-d1sgnxc0 27 19 leader leader NN cord-269150-d1sgnxc0 27 20 sequence sequence NN cord-269150-d1sgnxc0 27 21 , , , cord-269150-d1sgnxc0 27 22 hnRNP hnrnp DT cord-269150-d1sgnxc0 27 23 A1 a1 NN cord-269150-d1sgnxc0 27 24 ( ( -LRB- cord-269150-d1sgnxc0 27 25 27 27 CD cord-269150-d1sgnxc0 27 26 , , , cord-269150-d1sgnxc0 27 27 29 29 CD cord-269150-d1sgnxc0 27 28 , , , cord-269150-d1sgnxc0 27 29 30 30 CD cord-269150-d1sgnxc0 27 30 ) ) -RRB- cord-269150-d1sgnxc0 27 31 and and CC cord-269150-d1sgnxc0 27 32 hnRNP hnrnp DT cord-269150-d1sgnxc0 28 1 Q Q NNP cord-269150-d1sgnxc0 28 2 ( ( -LRB- cord-269150-d1sgnxc0 28 3 31 31 CD cord-269150-d1sgnxc0 28 4 ) ) -RRB- cord-269150-d1sgnxc0 28 5 with with IN cord-269150-d1sgnxc0 28 6 the the DT cord-269150-d1sgnxc0 28 7 3 3 CD cord-269150-d1sgnxc0 28 8 0 0 CD cord-269150-d1sgnxc0 28 9 -UTR -utr NN cord-269150-d1sgnxc0 28 10 . . . cord-269150-d1sgnxc0 29 1 More more RBR cord-269150-d1sgnxc0 29 2 recently recently RB cord-269150-d1sgnxc0 29 3 , , , cord-269150-d1sgnxc0 29 4 poly(A)-binding poly(a)-binde VBG cord-269150-d1sgnxc0 29 5 protein protein NN cord-269150-d1sgnxc0 29 6 ( ( -LRB- cord-269150-d1sgnxc0 29 7 PABP PABP NNP cord-269150-d1sgnxc0 29 8 ) ) -RRB- cord-269150-d1sgnxc0 29 9 , , , cord-269150-d1sgnxc0 29 10 hnRNP hnrnp DT cord-269150-d1sgnxc0 29 11 Q q NN cord-269150-d1sgnxc0 29 12 and and CC cord-269150-d1sgnxc0 29 13 glutamyl glutamyl NN cord-269150-d1sgnxc0 29 14 - - HYPH cord-269150-d1sgnxc0 29 15 prolyl prolyl NNP cord-269150-d1sgnxc0 29 16 - - HYPH cord-269150-d1sgnxc0 29 17 tRNA trna NN cord-269150-d1sgnxc0 29 18 synthetase synthetase NN cord-269150-d1sgnxc0 29 19 ( ( -LRB- cord-269150-d1sgnxc0 29 20 EPRS EPRS NNP cord-269150-d1sgnxc0 29 21 ) ) -RRB- cord-269150-d1sgnxc0 29 22 were be VBD cord-269150-d1sgnxc0 29 23 found find VBN cord-269150-d1sgnxc0 29 24 to to TO cord-269150-d1sgnxc0 29 25 play play VB cord-269150-d1sgnxc0 29 26 a a DT cord-269150-d1sgnxc0 29 27 role role NN cord-269150-d1sgnxc0 29 28 in in IN cord-269150-d1sgnxc0 29 29 coronavirus coronavirus NN cord-269150-d1sgnxc0 29 30 RNA RNA NNP cord-269150-d1sgnxc0 29 31 synthesis synthesis NN cord-269150-d1sgnxc0 29 32 through through IN cord-269150-d1sgnxc0 29 33 their -PRON- PRP$ cord-269150-d1sgnxc0 29 34 interaction interaction NN cord-269150-d1sgnxc0 29 35 with with IN cord-269150-d1sgnxc0 29 36 the the DT cord-269150-d1sgnxc0 29 37 3 3 CD cord-269150-d1sgnxc0 29 38 0 0 CD cord-269150-d1sgnxc0 29 39 -UTR -utr NN cord-269150-d1sgnxc0 29 40 of of IN cord-269150-d1sgnxc0 29 41 alphacoronavirus alphacoronavirus NNP cord-269150-d1sgnxc0 29 42 TGEV TGEV NNP cord-269150-d1sgnxc0 29 43 ( ( -LRB- cord-269150-d1sgnxc0 29 44 32 32 CD cord-269150-d1sgnxc0 29 45 ) ) -RRB- cord-269150-d1sgnxc0 29 46 . . . cord-269150-d1sgnxc0 30 1 In in IN cord-269150-d1sgnxc0 30 2 addition addition NN cord-269150-d1sgnxc0 30 3 , , , cord-269150-d1sgnxc0 30 4 interaction interaction NN cord-269150-d1sgnxc0 30 5 of of IN cord-269150-d1sgnxc0 30 6 viral viral JJ cord-269150-d1sgnxc0 30 7 proteins protein NNS cord-269150-d1sgnxc0 30 8 with with IN cord-269150-d1sgnxc0 30 9 host host NN cord-269150-d1sgnxc0 30 10 proteins protein NNS cord-269150-d1sgnxc0 30 11 , , , cord-269150-d1sgnxc0 30 12 such such JJ cord-269150-d1sgnxc0 30 13 as as IN cord-269150-d1sgnxc0 30 14 the the DT cord-269150-d1sgnxc0 30 15 recently recently RB cord-269150-d1sgnxc0 30 16 identified identify VBN cord-269150-d1sgnxc0 30 17 interaction interaction NN cord-269150-d1sgnxc0 30 18 between between IN cord-269150-d1sgnxc0 30 19 coronavirus coronavirus NN cord-269150-d1sgnxc0 30 20 nsp14 nsp14 NN cord-269150-d1sgnxc0 30 21 and and CC cord-269150-d1sgnxc0 30 22 DDX1 DDX1 NNP cord-269150-d1sgnxc0 30 23 ( ( -LRB- cord-269150-d1sgnxc0 30 24 33 33 CD cord-269150-d1sgnxc0 30 25 ) ) -RRB- cord-269150-d1sgnxc0 30 26 , , , cord-269150-d1sgnxc0 30 27 may may MD cord-269150-d1sgnxc0 30 28 also also RB cord-269150-d1sgnxc0 30 29 play play VB cord-269150-d1sgnxc0 30 30 important important JJ cord-269150-d1sgnxc0 30 31 enhancement enhancement NN cord-269150-d1sgnxc0 30 32 functions function NNS cord-269150-d1sgnxc0 30 33 in in IN cord-269150-d1sgnxc0 30 34 coronavirus coronavirus NN cord-269150-d1sgnxc0 30 35 replication replication NN cord-269150-d1sgnxc0 30 36 and and CC cord-269150-d1sgnxc0 30 37 infection infection NN cord-269150-d1sgnxc0 30 38 cycles cycle NNS cord-269150-d1sgnxc0 30 39 . . . cord-269150-d1sgnxc0 31 1 In in IN cord-269150-d1sgnxc0 31 2 this this DT cord-269150-d1sgnxc0 31 3 study study NN cord-269150-d1sgnxc0 31 4 , , , cord-269150-d1sgnxc0 31 5 we -PRON- PRP cord-269150-d1sgnxc0 31 6 describe describe VBP cord-269150-d1sgnxc0 31 7 the the DT cord-269150-d1sgnxc0 31 8 interaction interaction NN cord-269150-d1sgnxc0 31 9 of of IN cord-269150-d1sgnxc0 31 10 a a DT cord-269150-d1sgnxc0 31 11 cellular cellular JJ cord-269150-d1sgnxc0 31 12 protein protein NN cord-269150-d1sgnxc0 31 13 , , , cord-269150-d1sgnxc0 31 14 MADP1 MADP1 NNP cord-269150-d1sgnxc0 31 15 ( ( -LRB- cord-269150-d1sgnxc0 31 16 zinc zinc NN cord-269150-d1sgnxc0 31 17 finger finger NN cord-269150-d1sgnxc0 31 18 CCHC CCHC NNP cord-269150-d1sgnxc0 31 19 - - HYPH cord-269150-d1sgnxc0 31 20 type type NN cord-269150-d1sgnxc0 31 21 and and CC cord-269150-d1sgnxc0 31 22 RNA RNA NNP cord-269150-d1sgnxc0 31 23 binding bind VBG cord-269150-d1sgnxc0 31 24 motif motif NN cord-269150-d1sgnxc0 31 25 1 1 CD cord-269150-d1sgnxc0 31 26 ) ) -RRB- cord-269150-d1sgnxc0 31 27 with with IN cord-269150-d1sgnxc0 31 28 the the DT cord-269150-d1sgnxc0 31 29 5 5 CD cord-269150-d1sgnxc0 31 30 0 0 CD cord-269150-d1sgnxc0 31 31 -UTR -utr NN cord-269150-d1sgnxc0 31 32 of of IN cord-269150-d1sgnxc0 31 33 IBV IBV NNP cord-269150-d1sgnxc0 31 34 and and CC cord-269150-d1sgnxc0 31 35 SARS SARS NNP cord-269150-d1sgnxc0 31 36 - - HYPH cord-269150-d1sgnxc0 31 37 CoV CoV NNP cord-269150-d1sgnxc0 31 38 , , , cord-269150-d1sgnxc0 31 39 using use VBG cord-269150-d1sgnxc0 31 40 yeast yeast NN cord-269150-d1sgnxc0 31 41 - - HYPH cord-269150-d1sgnxc0 31 42 based base VBN cord-269150-d1sgnxc0 31 43 three three CD cord-269150-d1sgnxc0 31 44 hybrid hybrid NN cord-269150-d1sgnxc0 31 45 screen screen NN cord-269150-d1sgnxc0 31 46 ( ( -LRB- cord-269150-d1sgnxc0 31 47 34 34 CD cord-269150-d1sgnxc0 31 48 ) ) -RRB- cord-269150-d1sgnxc0 31 49 and and CC cord-269150-d1sgnxc0 31 50 RNA RNA NNP cord-269150-d1sgnxc0 31 51 - - HYPH cord-269150-d1sgnxc0 31 52 binding bind VBG cord-269150-d1sgnxc0 31 53 assays assay NNS cord-269150-d1sgnxc0 31 54 . . . cord-269150-d1sgnxc0 32 1 Subsequently subsequently RB cord-269150-d1sgnxc0 32 2 , , , cord-269150-d1sgnxc0 32 3 the the DT cord-269150-d1sgnxc0 32 4 RNA RNA NNP cord-269150-d1sgnxc0 32 5 - - HYPH cord-269150-d1sgnxc0 32 6 binding bind VBG cord-269150-d1sgnxc0 32 7 domain domain NN cord-269150-d1sgnxc0 32 8 of of IN cord-269150-d1sgnxc0 32 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 32 10 and and CC cord-269150-d1sgnxc0 32 11 the the DT cord-269150-d1sgnxc0 32 12 RNA RNA NNP cord-269150-d1sgnxc0 32 13 secondary secondary JJ cord-269150-d1sgnxc0 32 14 structure structure NN cord-269150-d1sgnxc0 32 15 responsible responsible JJ cord-269150-d1sgnxc0 32 16 for for IN cord-269150-d1sgnxc0 32 17 the the DT cord-269150-d1sgnxc0 32 18 interaction interaction NN cord-269150-d1sgnxc0 32 19 were be VBD cord-269150-d1sgnxc0 32 20 mapped map VBN cord-269150-d1sgnxc0 32 21 and and CC cord-269150-d1sgnxc0 32 22 defined define VBN cord-269150-d1sgnxc0 32 23 . . . cord-269150-d1sgnxc0 33 1 Using use VBG cord-269150-d1sgnxc0 33 2 indirect indirect JJ cord-269150-d1sgnxc0 33 3 immunofluorescence immunofluorescence NN cord-269150-d1sgnxc0 33 4 , , , cord-269150-d1sgnxc0 33 5 we -PRON- PRP cord-269150-d1sgnxc0 33 6 confirmed confirm VBD cord-269150-d1sgnxc0 33 7 that that IN cord-269150-d1sgnxc0 33 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 33 9 , , , cord-269150-d1sgnxc0 33 10 despite despite IN cord-269150-d1sgnxc0 33 11 being be VBG cord-269150-d1sgnxc0 33 12 reported report VBN cord-269150-d1sgnxc0 33 13 as as IN cord-269150-d1sgnxc0 33 14 a a DT cord-269150-d1sgnxc0 33 15 nuclear nuclear JJ cord-269150-d1sgnxc0 33 16 protein protein NN cord-269150-d1sgnxc0 33 17 ( ( -LRB- cord-269150-d1sgnxc0 33 18 35 35 CD cord-269150-d1sgnxc0 33 19 ) ) -RRB- cord-269150-d1sgnxc0 33 20 , , , cord-269150-d1sgnxc0 33 21 was be VBD cord-269150-d1sgnxc0 33 22 detected detect VBN cord-269150-d1sgnxc0 33 23 in in IN cord-269150-d1sgnxc0 33 24 the the DT cord-269150-d1sgnxc0 33 25 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 33 26 of of IN cord-269150-d1sgnxc0 33 27 virus virus NN cord-269150-d1sgnxc0 33 28 - - HYPH cord-269150-d1sgnxc0 33 29 infected infect VBN cord-269150-d1sgnxc0 33 30 cells cell NNS cord-269150-d1sgnxc0 33 31 and and CC cord-269150-d1sgnxc0 33 32 partially partially RB cord-269150-d1sgnxc0 33 33 co co VBD cord-269150-d1sgnxc0 33 34 - - VBN cord-269150-d1sgnxc0 33 35 localized localize VBN cord-269150-d1sgnxc0 33 36 with with IN cord-269150-d1sgnxc0 33 37 the the DT cord-269150-d1sgnxc0 33 38 RTCs rtc NNS cord-269150-d1sgnxc0 33 39 . . . cord-269150-d1sgnxc0 34 1 Upon upon IN cord-269150-d1sgnxc0 34 2 silencing silence VBG cord-269150-d1sgnxc0 34 3 of of IN cord-269150-d1sgnxc0 34 4 MADP1 MADP1 NNP cord-269150-d1sgnxc0 34 5 using use VBG cord-269150-d1sgnxc0 34 6 siRNA siRNA NNP cord-269150-d1sgnxc0 34 7 , , , cord-269150-d1sgnxc0 34 8 viral viral JJ cord-269150-d1sgnxc0 34 9 RNA RNA NNP cord-269150-d1sgnxc0 34 10 synthesis synthesis NN cord-269150-d1sgnxc0 34 11 on on IN cord-269150-d1sgnxc0 34 12 general general JJ cord-269150-d1sgnxc0 34 13 has have VBZ cord-269150-d1sgnxc0 34 14 been be VBN cord-269150-d1sgnxc0 34 15 affected affect VBN cord-269150-d1sgnxc0 34 16 , , , cord-269150-d1sgnxc0 34 17 resulting result VBG cord-269150-d1sgnxc0 34 18 in in IN cord-269150-d1sgnxc0 34 19 a a DT cord-269150-d1sgnxc0 34 20 lower low JJR cord-269150-d1sgnxc0 34 21 replication replication NN cord-269150-d1sgnxc0 34 22 efficiency efficiency NN cord-269150-d1sgnxc0 34 23 and and CC cord-269150-d1sgnxc0 34 24 infectivity infectivity NN cord-269150-d1sgnxc0 34 25 . . . cord-269150-d1sgnxc0 35 1 All all DT cord-269150-d1sgnxc0 35 2 wild wild JJ cord-269150-d1sgnxc0 35 3 - - HYPH cord-269150-d1sgnxc0 35 4 type type NN cord-269150-d1sgnxc0 35 5 and and CC cord-269150-d1sgnxc0 35 6 mutant mutant JJ cord-269150-d1sgnxc0 35 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 35 8 expressing express VBG cord-269150-d1sgnxc0 35 9 constructs construct NNS cord-269150-d1sgnxc0 35 10 were be VBD cord-269150-d1sgnxc0 35 11 based base VBN cord-269150-d1sgnxc0 35 12 on on IN cord-269150-d1sgnxc0 35 13 the the DT cord-269150-d1sgnxc0 35 14 vector vector NN cord-269150-d1sgnxc0 35 15 pXJ40Flag pXJ40Flag NNP cord-269150-d1sgnxc0 35 16 which which WDT cord-269150-d1sgnxc0 35 17 contains contain VBZ cord-269150-d1sgnxc0 35 18 both both CC cord-269150-d1sgnxc0 35 19 the the DT cord-269150-d1sgnxc0 35 20 CMV CMV NNP cord-269150-d1sgnxc0 35 21 and and CC cord-269150-d1sgnxc0 35 22 T7 T7 NNP cord-269150-d1sgnxc0 35 23 promoter promoter NN cord-269150-d1sgnxc0 35 24 and and CC cord-269150-d1sgnxc0 35 25 all all DT cord-269150-d1sgnxc0 35 26 expressed express VBN cord-269150-d1sgnxc0 35 27 proteins protein NNS cord-269150-d1sgnxc0 35 28 were be VBD cord-269150-d1sgnxc0 35 29 N n NN cord-269150-d1sgnxc0 35 30 - - HYPH cord-269150-d1sgnxc0 35 31 terminally terminally RB cord-269150-d1sgnxc0 35 32 tagged tag VBN cord-269150-d1sgnxc0 35 33 with with IN cord-269150-d1sgnxc0 35 34 the the DT cord-269150-d1sgnxc0 35 35 Flag Flag NNP cord-269150-d1sgnxc0 35 36 epitope epitope NN cord-269150-d1sgnxc0 35 37 . . . cord-269150-d1sgnxc0 36 1 For for IN cord-269150-d1sgnxc0 36 2 the the DT cord-269150-d1sgnxc0 36 3 over over JJ cord-269150-d1sgnxc0 36 4 - - HYPH cord-269150-d1sgnxc0 36 5 expression expression NN cord-269150-d1sgnxc0 36 6 of of IN cord-269150-d1sgnxc0 36 7 the the DT cord-269150-d1sgnxc0 36 8 wild wild JJ cord-269150-d1sgnxc0 36 9 - - HYPH cord-269150-d1sgnxc0 36 10 type type NN cord-269150-d1sgnxc0 36 11 and and CC cord-269150-d1sgnxc0 36 12 mutant mutant JJ cord-269150-d1sgnxc0 36 13 MADP1 MADP1 NNP cord-269150-d1sgnxc0 36 14 proteins protein NNS cord-269150-d1sgnxc0 36 15 , , , cord-269150-d1sgnxc0 36 16 H1299 H1299 NNP cord-269150-d1sgnxc0 36 17 cells cell NNS cord-269150-d1sgnxc0 36 18 grown grow VBN cord-269150-d1sgnxc0 36 19 to to IN cord-269150-d1sgnxc0 36 20 100 100 CD cord-269150-d1sgnxc0 36 21 % % NN cord-269150-d1sgnxc0 36 22 confluency confluency NN cord-269150-d1sgnxc0 36 23 were be VBD cord-269150-d1sgnxc0 36 24 infected infect VBN cord-269150-d1sgnxc0 36 25 with with IN cord-269150-d1sgnxc0 36 26 recombinant recombinant JJ cord-269150-d1sgnxc0 36 27 Vaccinia vaccinia NN cord-269150-d1sgnxc0 36 28 - - HYPH cord-269150-d1sgnxc0 36 29 T7 t7 NN cord-269150-d1sgnxc0 36 30 virus virus NN cord-269150-d1sgnxc0 36 31 for for IN cord-269150-d1sgnxc0 36 32 2 2 CD cord-269150-d1sgnxc0 36 33 h h NN cord-269150-d1sgnxc0 36 34 ( ( -LRB- cord-269150-d1sgnxc0 36 35 h h NNP cord-269150-d1sgnxc0 36 36 ) ) -RRB- cord-269150-d1sgnxc0 36 37 , , , cord-269150-d1sgnxc0 36 38 and and CC cord-269150-d1sgnxc0 36 39 the the DT cord-269150-d1sgnxc0 36 40 constructs construct NNS cord-269150-d1sgnxc0 36 41 were be VBD cord-269150-d1sgnxc0 36 42 transfected transfecte VBN cord-269150-d1sgnxc0 36 43 into into IN cord-269150-d1sgnxc0 36 44 the the DT cord-269150-d1sgnxc0 36 45 infected infected JJ cord-269150-d1sgnxc0 36 46 cells cell NNS cord-269150-d1sgnxc0 36 47 using use VBG cord-269150-d1sgnxc0 36 48 Effectene Effectene NNP cord-269150-d1sgnxc0 36 49 Transfection Transfection NNP cord-269150-d1sgnxc0 36 50 Reagent Reagent NNP cord-269150-d1sgnxc0 36 51 ( ( -LRB- cord-269150-d1sgnxc0 36 52 Qiagen Qiagen NNP cord-269150-d1sgnxc0 36 53 ) ) -RRB- cord-269150-d1sgnxc0 36 54 . . . cord-269150-d1sgnxc0 37 1 Cells cell NNS cord-269150-d1sgnxc0 37 2 were be VBD cord-269150-d1sgnxc0 37 3 lysed lyse VBN cord-269150-d1sgnxc0 37 4 with with IN cord-269150-d1sgnxc0 37 5 lysis lysis NN cord-269150-d1sgnxc0 37 6 buffer buffer NN cord-269150-d1sgnxc0 37 7 [ [ -LRB- cord-269150-d1sgnxc0 37 8 140 140 CD cord-269150-d1sgnxc0 37 9 mM mm CD cord-269150-d1sgnxc0 37 10 NaCl nacl NN cord-269150-d1sgnxc0 37 11 , , , cord-269150-d1sgnxc0 37 12 10 10 CD cord-269150-d1sgnxc0 37 13 mM mm CD cord-269150-d1sgnxc0 37 14 Tris Tris NNP cord-269150-d1sgnxc0 37 15 ( ( -LRB- cord-269150-d1sgnxc0 37 16 pH pH NNP cord-269150-d1sgnxc0 37 17 8.0 8.0 CD cord-269150-d1sgnxc0 37 18 ) ) -RRB- cord-269150-d1sgnxc0 37 19 , , , cord-269150-d1sgnxc0 37 20 1 1 CD cord-269150-d1sgnxc0 37 21 % % NN cord-269150-d1sgnxc0 37 22 NP-40 NP-40 NNP cord-269150-d1sgnxc0 37 23 ] ] -RRB- cord-269150-d1sgnxc0 38 1 22 22 CD cord-269150-d1sgnxc0 38 2 h h NN cord-269150-d1sgnxc0 38 3 post post NN cord-269150-d1sgnxc0 38 4 - - NN cord-269150-d1sgnxc0 38 5 transfection transfection NN cord-269150-d1sgnxc0 38 6 . . . cord-269150-d1sgnxc0 39 1 Template template NN cord-269150-d1sgnxc0 39 2 DNA DNA NNP cord-269150-d1sgnxc0 39 3 was be VBD cord-269150-d1sgnxc0 39 4 amplified amplify VBN cord-269150-d1sgnxc0 39 5 from from IN cord-269150-d1sgnxc0 39 6 plasmid plasmid NN cord-269150-d1sgnxc0 39 7 DNA dna NN cord-269150-d1sgnxc0 39 8 encoding encode VBG cord-269150-d1sgnxc0 39 9 the the DT cord-269150-d1sgnxc0 39 10 5 5 CD cord-269150-d1sgnxc0 39 11 0 0 CD cord-269150-d1sgnxc0 39 12 end end NN cord-269150-d1sgnxc0 39 13 of of IN cord-269150-d1sgnxc0 39 14 IBV IBV NNP cord-269150-d1sgnxc0 39 15 genome genome NN cord-269150-d1sgnxc0 39 16 with with IN cord-269150-d1sgnxc0 39 17 various various JJ cord-269150-d1sgnxc0 39 18 sets set NNS cord-269150-d1sgnxc0 39 19 of of IN cord-269150-d1sgnxc0 39 20 primers primer NNS cord-269150-d1sgnxc0 39 21 targeting target VBG cord-269150-d1sgnxc0 39 22 different different JJ cord-269150-d1sgnxc0 39 23 regions region NNS cord-269150-d1sgnxc0 39 24 of of IN cord-269150-d1sgnxc0 39 25 the the DT cord-269150-d1sgnxc0 39 26 5 5 CD cord-269150-d1sgnxc0 39 27 0 0 CD cord-269150-d1sgnxc0 39 28 -UTR -UTR . cord-269150-d1sgnxc0 40 1 ( ( -LRB- cord-269150-d1sgnxc0 40 2 Tables table NNS cord-269150-d1sgnxc0 40 3 1 1 CD cord-269150-d1sgnxc0 40 4 _SP cord-269150-d1sgnxc0 40 5 and and CC cord-269150-d1sgnxc0 40 6 2 2 CD cord-269150-d1sgnxc0 40 7 ) ) -RRB- cord-269150-d1sgnxc0 40 8 , , , cord-269150-d1sgnxc0 40 9 with with IN cord-269150-d1sgnxc0 40 10 the the DT cord-269150-d1sgnxc0 40 11 sense sense NN cord-269150-d1sgnxc0 40 12 primers primer NNS cord-269150-d1sgnxc0 40 13 containing contain VBG cord-269150-d1sgnxc0 40 14 the the DT cord-269150-d1sgnxc0 40 15 T7 T7 NNP cord-269150-d1sgnxc0 40 16 promoter promoter NN cord-269150-d1sgnxc0 40 17 sequence sequence NN cord-269150-d1sgnxc0 40 18 ( ( -LRB- cord-269150-d1sgnxc0 40 19 36 36 CD cord-269150-d1sgnxc0 40 20 ) ) -RRB- cord-269150-d1sgnxc0 40 21 . . . cord-269150-d1sgnxc0 41 1 Biotinylated Biotinylated NNP cord-269150-d1sgnxc0 41 2 RNAs rna NNS cord-269150-d1sgnxc0 41 3 were be VBD cord-269150-d1sgnxc0 41 4 in in IN cord-269150-d1sgnxc0 41 5 vitro vitro FW cord-269150-d1sgnxc0 41 6 transcribed transcribe VBN cord-269150-d1sgnxc0 41 7 with with IN cord-269150-d1sgnxc0 41 8 T7 T7 NNP cord-269150-d1sgnxc0 41 9 RNA RNA NNP cord-269150-d1sgnxc0 41 10 polymerase polymerase NN cord-269150-d1sgnxc0 41 11 ( ( -LRB- cord-269150-d1sgnxc0 41 12 Roche Roche NNP cord-269150-d1sgnxc0 41 13 Applied Applied NNP cord-269150-d1sgnxc0 41 14 Science Science NNP cord-269150-d1sgnxc0 41 15 ) ) -RRB- cord-269150-d1sgnxc0 41 16 in in IN cord-269150-d1sgnxc0 41 17 the the DT cord-269150-d1sgnxc0 41 18 presence presence NN cord-269150-d1sgnxc0 41 19 of of IN cord-269150-d1sgnxc0 41 20 Biotin Biotin NNP cord-269150-d1sgnxc0 41 21 RNA RNA NNP cord-269150-d1sgnxc0 41 22 Labeling Labeling NNP cord-269150-d1sgnxc0 41 23 Mix Mix NNP cord-269150-d1sgnxc0 41 24 ( ( -LRB- cord-269150-d1sgnxc0 41 25 Roche Roche NNP cord-269150-d1sgnxc0 41 26 Applied Applied NNP cord-269150-d1sgnxc0 41 27 Science Science NNP cord-269150-d1sgnxc0 41 28 ) ) -RRB- cord-269150-d1sgnxc0 41 29 at at IN cord-269150-d1sgnxc0 41 30 37 37 CD cord-269150-d1sgnxc0 41 31 C c NN cord-269150-d1sgnxc0 41 32 for for IN cord-269150-d1sgnxc0 41 33 2 2 CD cord-269150-d1sgnxc0 41 34 h. h. NNP cord-269150-d1sgnxc0 41 35 Template template NN cord-269150-d1sgnxc0 41 36 DNAs dna NNS cord-269150-d1sgnxc0 41 37 were be VBD cord-269150-d1sgnxc0 41 38 removed remove VBN cord-269150-d1sgnxc0 41 39 by by IN cord-269150-d1sgnxc0 41 40 digestion digestion NN cord-269150-d1sgnxc0 41 41 with with IN cord-269150-d1sgnxc0 41 42 RNase rnase NN cord-269150-d1sgnxc0 41 43 - - HYPH cord-269150-d1sgnxc0 41 44 free free JJ cord-269150-d1sgnxc0 42 1 DNase DNase NNP cord-269150-d1sgnxc0 42 2 I -PRON- PRP cord-269150-d1sgnxc0 43 1 ( ( -LRB- cord-269150-d1sgnxc0 43 2 Roche Roche NNP cord-269150-d1sgnxc0 43 3 Applied Applied NNP cord-269150-d1sgnxc0 43 4 Science Science NNP cord-269150-d1sgnxc0 43 5 ) ) -RRB- cord-269150-d1sgnxc0 43 6 and and CC cord-269150-d1sgnxc0 43 7 the the DT cord-269150-d1sgnxc0 43 8 labeled label VBN cord-269150-d1sgnxc0 43 9 RNAs rna NNS cord-269150-d1sgnxc0 43 10 purified purify VBN cord-269150-d1sgnxc0 43 11 with with IN cord-269150-d1sgnxc0 43 12 UltraPure UltraPure NNP cord-269150-d1sgnxc0 43 13 Phenol Phenol NNP cord-269150-d1sgnxc0 43 14 : : : cord-269150-d1sgnxc0 43 15 Chloroform chloroform NN cord-269150-d1sgnxc0 43 16 : : : cord-269150-d1sgnxc0 43 17 Isoamyl Isoamyl NNP cord-269150-d1sgnxc0 43 18 Alcohol Alcohol NNP cord-269150-d1sgnxc0 43 19 ( ( -LRB- cord-269150-d1sgnxc0 43 20 Invitrogen Invitrogen NNP cord-269150-d1sgnxc0 43 21 ) ) -RRB- cord-269150-d1sgnxc0 44 1 then then RB cord-269150-d1sgnxc0 44 2 solubilized solubilize VBN cord-269150-d1sgnxc0 44 3 in in IN cord-269150-d1sgnxc0 44 4 nuclease nuclease NN cord-269150-d1sgnxc0 44 5 - - HYPH cord-269150-d1sgnxc0 44 6 free free JJ cord-269150-d1sgnxc0 44 7 water water NN cord-269150-d1sgnxc0 44 8 . . . cord-269150-d1sgnxc0 45 1 Biotinylated Biotinylated NNP cord-269150-d1sgnxc0 45 2 RNA RNA NNP cord-269150-d1sgnxc0 45 3 at at IN cord-269150-d1sgnxc0 45 4 0.1 0.1 CD cord-269150-d1sgnxc0 45 5 mM mm CD cord-269150-d1sgnxc0 45 6 was be VBD cord-269150-d1sgnxc0 45 7 incubated incubate VBN cord-269150-d1sgnxc0 45 8 with with IN cord-269150-d1sgnxc0 45 9 cell cell NN cord-269150-d1sgnxc0 45 10 lysates lysate NNS cord-269150-d1sgnxc0 45 11 over over RB cord-269150-d1sgnxc0 45 12 - - HYPH cord-269150-d1sgnxc0 45 13 expressing express VBG cord-269150-d1sgnxc0 45 14 EGFP EGFP NNP cord-269150-d1sgnxc0 45 15 , , , cord-269150-d1sgnxc0 45 16 Flag Flag NNP cord-269150-d1sgnxc0 45 17 - - HYPH cord-269150-d1sgnxc0 45 18 tagged tagged NNP cord-269150-d1sgnxc0 45 19 MADP1 MADP1 NNP cord-269150-d1sgnxc0 45 20 or or CC cord-269150-d1sgnxc0 45 21 its -PRON- PRP$ cord-269150-d1sgnxc0 45 22 mutant mutant JJ cord-269150-d1sgnxc0 45 23 proteins protein NNS cord-269150-d1sgnxc0 45 24 , , , cord-269150-d1sgnxc0 45 25 respectively respectively RB cord-269150-d1sgnxc0 45 26 , , , cord-269150-d1sgnxc0 45 27 in in IN cord-269150-d1sgnxc0 45 28 the the DT cord-269150-d1sgnxc0 45 29 presence presence NN cord-269150-d1sgnxc0 45 30 of of IN cord-269150-d1sgnxc0 45 31 10 10 CD cord-269150-d1sgnxc0 45 32 mM mm CD cord-269150-d1sgnxc0 45 33 dithiothreitol dithiothreitol NN cord-269150-d1sgnxc0 45 34 ( ( -LRB- cord-269150-d1sgnxc0 45 35 DTT DTT NNP cord-269150-d1sgnxc0 45 36 ) ) -RRB- cord-269150-d1sgnxc0 45 37 , , . cord-269150-d1sgnxc0 46 1 100 100 CD cord-269150-d1sgnxc0 46 2 mg mg NNP cord-269150-d1sgnxc0 46 3 / / SYM cord-269150-d1sgnxc0 46 4 ml ml NNS cord-269150-d1sgnxc0 46 5 yeast yeast NN cord-269150-d1sgnxc0 46 6 tRNA tRNA NNP cord-269150-d1sgnxc0 46 7 ( ( -LRB- cord-269150-d1sgnxc0 46 8 Ambion Ambion NNP cord-269150-d1sgnxc0 46 9 ) ) -RRB- cord-269150-d1sgnxc0 46 10 and and CC cord-269150-d1sgnxc0 46 11 1 1 CD cord-269150-d1sgnxc0 46 12 U u NN cord-269150-d1sgnxc0 46 13 / / SYM cord-269150-d1sgnxc0 46 14 ml ml NN cord-269150-d1sgnxc0 46 15 Protector Protector NNP cord-269150-d1sgnxc0 46 16 RNase RNase NNP cord-269150-d1sgnxc0 46 17 Inhibitor Inhibitor NNP cord-269150-d1sgnxc0 46 18 ( ( -LRB- cord-269150-d1sgnxc0 46 19 Roche Roche NNP cord-269150-d1sgnxc0 46 20 Applied Applied NNP cord-269150-d1sgnxc0 46 21 Science Science NNP cord-269150-d1sgnxc0 46 22 ) ) -RRB- cord-269150-d1sgnxc0 46 23 in in IN cord-269150-d1sgnxc0 46 24 a a DT cord-269150-d1sgnxc0 46 25 final final JJ cord-269150-d1sgnxc0 46 26 volume volume NN cord-269150-d1sgnxc0 46 27 of of IN cord-269150-d1sgnxc0 46 28 200 200 CD cord-269150-d1sgnxc0 46 29 ml ml NNS cord-269150-d1sgnxc0 46 30 at at IN cord-269150-d1sgnxc0 46 31 room room NN cord-269150-d1sgnxc0 46 32 temperature temperature NN cord-269150-d1sgnxc0 46 33 for for IN cord-269150-d1sgnxc0 46 34 30 30 CD cord-269150-d1sgnxc0 46 35 min min NN cord-269150-d1sgnxc0 46 36 . . . cord-269150-d1sgnxc0 47 1 The the DT cord-269150-d1sgnxc0 47 2 mixtures mixture NNS cord-269150-d1sgnxc0 47 3 were be VBD cord-269150-d1sgnxc0 47 4 incubated incubate VBN cord-269150-d1sgnxc0 47 5 with with IN cord-269150-d1sgnxc0 47 6 40 40 CD cord-269150-d1sgnxc0 47 7 ml ml NNS cord-269150-d1sgnxc0 47 8 ( ( -LRB- cord-269150-d1sgnxc0 47 9 50 50 CD cord-269150-d1sgnxc0 47 10 % % NN cord-269150-d1sgnxc0 47 11 slurry slurry NN cord-269150-d1sgnxc0 47 12 ) ) -RRB- cord-269150-d1sgnxc0 47 13 of of IN cord-269150-d1sgnxc0 47 14 streptavidin streptavidin NNS cord-269150-d1sgnxc0 47 15 agarose agarose VBD cord-269150-d1sgnxc0 47 16 beads bead NNS cord-269150-d1sgnxc0 47 17 ( ( -LRB- cord-269150-d1sgnxc0 47 18 Sigma Sigma NNP cord-269150-d1sgnxc0 47 19 Aldrich Aldrich NNP cord-269150-d1sgnxc0 47 20 ) ) -RRB- cord-269150-d1sgnxc0 47 21 at at IN cord-269150-d1sgnxc0 47 22 room room NN cord-269150-d1sgnxc0 47 23 temperature temperature NN cord-269150-d1sgnxc0 47 24 for for IN cord-269150-d1sgnxc0 47 25 30 30 CD cord-269150-d1sgnxc0 47 26 min min NN cord-269150-d1sgnxc0 47 27 . . . cord-269150-d1sgnxc0 48 1 The the DT cord-269150-d1sgnxc0 48 2 beads bead NNS cord-269150-d1sgnxc0 48 3 were be VBD cord-269150-d1sgnxc0 48 4 collected collect VBN cord-269150-d1sgnxc0 48 5 by by IN cord-269150-d1sgnxc0 48 6 centrifugation centrifugation NN cord-269150-d1sgnxc0 48 7 and and CC cord-269150-d1sgnxc0 48 8 washed wash VBD cord-269150-d1sgnxc0 48 9 three three CD cord-269150-d1sgnxc0 48 10 times time NNS cord-269150-d1sgnxc0 48 11 with with IN cord-269150-d1sgnxc0 48 12 RNase rnase NN cord-269150-d1sgnxc0 48 13 P p NN cord-269150-d1sgnxc0 48 14 ( ( -LRB- cord-269150-d1sgnxc0 48 15 RP rp NN cord-269150-d1sgnxc0 48 16 ) ) -RRB- cord-269150-d1sgnxc0 48 17 buffer buffer NN cord-269150-d1sgnxc0 48 18 ( ( -LRB- cord-269150-d1sgnxc0 48 19 50 50 CD cord-269150-d1sgnxc0 48 20 mM mm CD cord-269150-d1sgnxc0 48 21 KCl KCl NNS cord-269150-d1sgnxc0 48 22 , , , cord-269150-d1sgnxc0 48 23 1 1 CD cord-269150-d1sgnxc0 48 24 mM mm CD cord-269150-d1sgnxc0 48 25 MgCl MgCl NNP cord-269150-d1sgnxc0 48 26 2 2 CD cord-269150-d1sgnxc0 48 27 , , , cord-269150-d1sgnxc0 48 28 10 10 CD cord-269150-d1sgnxc0 48 29 mM mm CD cord-269150-d1sgnxc0 48 30 HEPES HEPES NNP cord-269150-d1sgnxc0 48 31 , , , cord-269150-d1sgnxc0 48 32 pH pH NNP cord-269150-d1sgnxc0 48 33 8.0 8.0 CD cord-269150-d1sgnxc0 48 34 ) ) -RRB- cord-269150-d1sgnxc0 48 35 , , , cord-269150-d1sgnxc0 48 36 suspended suspend VBN cord-269150-d1sgnxc0 48 37 in in IN cord-269150-d1sgnxc0 48 38 25 25 CD cord-269150-d1sgnxc0 48 39 ml ml NNS cord-269150-d1sgnxc0 48 40 of of IN cord-269150-d1sgnxc0 48 41 sodium sodium NN cord-269150-d1sgnxc0 48 42 dodecyl dodecyl NNP cord-269150-d1sgnxc0 48 43 sulfate sulfate NNP cord-269150-d1sgnxc0 48 44 ( ( -LRB- cord-269150-d1sgnxc0 48 45 SDS SDS NNP cord-269150-d1sgnxc0 48 46 ) ) -RRB- cord-269150-d1sgnxc0 48 47 sample sample NN cord-269150-d1sgnxc0 48 48 buffer buffer NN cord-269150-d1sgnxc0 48 49 with with IN cord-269150-d1sgnxc0 48 50 100 100 CD cord-269150-d1sgnxc0 48 51 mM mm CD cord-269150-d1sgnxc0 48 52 DTT DTT NNP cord-269150-d1sgnxc0 48 53 . . . cord-269150-d1sgnxc0 49 1 Bound bind VBN cord-269150-d1sgnxc0 49 2 proteins protein NNS cord-269150-d1sgnxc0 49 3 were be VBD cord-269150-d1sgnxc0 49 4 resolved resolve VBN cord-269150-d1sgnxc0 49 5 by by IN cord-269150-d1sgnxc0 49 6 SDS SDS NNP cord-269150-d1sgnxc0 49 7 - - HYPH cord-269150-d1sgnxc0 49 8 polyacrylamide polyacrylamide NN cord-269150-d1sgnxc0 49 9 gel gel NN cord-269150-d1sgnxc0 49 10 electrophoresis electrophoresis NN cord-269150-d1sgnxc0 49 11 ( ( -LRB- cord-269150-d1sgnxc0 49 12 SDS SDS NNP cord-269150-d1sgnxc0 49 13 - - HYPH cord-269150-d1sgnxc0 49 14 PAGE PAGE NNP cord-269150-d1sgnxc0 49 15 ) ) -RRB- cord-269150-d1sgnxc0 49 16 and and CC cord-269150-d1sgnxc0 49 17 detected detect VBN cord-269150-d1sgnxc0 49 18 with with IN cord-269150-d1sgnxc0 49 19 appropriate appropriate JJ cord-269150-d1sgnxc0 49 20 antibodies antibody NNS cord-269150-d1sgnxc0 49 21 . . . cord-269150-d1sgnxc0 50 1 African african JJ cord-269150-d1sgnxc0 50 2 green green JJ cord-269150-d1sgnxc0 50 3 monkey monkey NN cord-269150-d1sgnxc0 50 4 kidney kidney NN cord-269150-d1sgnxc0 50 5 cells cell NNS cord-269150-d1sgnxc0 50 6 ( ( -LRB- cord-269150-d1sgnxc0 50 7 Vero Vero NNP cord-269150-d1sgnxc0 50 8 ) ) -RRB- cord-269150-d1sgnxc0 50 9 grown grow VBN cord-269150-d1sgnxc0 50 10 to to IN cord-269150-d1sgnxc0 50 11 50 50 CD cord-269150-d1sgnxc0 50 12 % % NN cord-269150-d1sgnxc0 50 13 confluency confluency NN cord-269150-d1sgnxc0 50 14 in in IN cord-269150-d1sgnxc0 50 15 four four CD cord-269150-d1sgnxc0 50 16 - - HYPH cord-269150-d1sgnxc0 50 17 chamber chamber NN cord-269150-d1sgnxc0 50 18 glass glass NN cord-269150-d1sgnxc0 50 19 slides slide NNS cord-269150-d1sgnxc0 50 20 were be VBD cord-269150-d1sgnxc0 50 21 transfected transfecte VBN cord-269150-d1sgnxc0 50 22 to to IN cord-269150-d1sgnxc0 50 23 over over IN cord-269150-d1sgnxc0 50 24 - - HYPH cord-269150-d1sgnxc0 50 25 express express JJ cord-269150-d1sgnxc0 50 26 Flag Flag NNP cord-269150-d1sgnxc0 50 27 - - HYPH cord-269150-d1sgnxc0 50 28 tagged tagged NNP cord-269150-d1sgnxc0 50 29 MADP1 MADP1 NNP cord-269150-d1sgnxc0 50 30 or or CC cord-269150-d1sgnxc0 50 31 vector vector NN cord-269150-d1sgnxc0 50 32 control control NN cord-269150-d1sgnxc0 50 33 using use VBG cord-269150-d1sgnxc0 50 34 Effectene Effectene NNP cord-269150-d1sgnxc0 50 35 for for IN cord-269150-d1sgnxc0 50 36 16 16 CD cord-269150-d1sgnxc0 50 37 h. h. NN cord-269150-d1sgnxc0 50 38 Transfected Transfected NNP cord-269150-d1sgnxc0 50 39 cells cell NNS cord-269150-d1sgnxc0 50 40 were be VBD cord-269150-d1sgnxc0 50 41 infected infect VBN cord-269150-d1sgnxc0 50 42 with with IN cord-269150-d1sgnxc0 50 43 wild wild JJ cord-269150-d1sgnxc0 50 44 - - HYPH cord-269150-d1sgnxc0 50 45 type type NN cord-269150-d1sgnxc0 50 46 IBV IBV NNP cord-269150-d1sgnxc0 50 47 or or CC cord-269150-d1sgnxc0 50 48 mock mock NN cord-269150-d1sgnxc0 50 49 - - HYPH cord-269150-d1sgnxc0 50 50 infected infect VBN cord-269150-d1sgnxc0 50 51 with with IN cord-269150-d1sgnxc0 50 52 Vero Vero NNP cord-269150-d1sgnxc0 50 53 cell cell NN cord-269150-d1sgnxc0 50 54 lysate lysate NN cord-269150-d1sgnxc0 50 55 ( ( -LRB- cord-269150-d1sgnxc0 50 56 Vero Vero NNP cord-269150-d1sgnxc0 50 57 cells cell NNS cord-269150-d1sgnxc0 50 58 with with IN cord-269150-d1sgnxc0 50 59 serum serum NN cord-269150-d1sgnxc0 50 60 - - HYPH cord-269150-d1sgnxc0 50 61 free free JJ cord-269150-d1sgnxc0 50 62 medium medium NN cord-269150-d1sgnxc0 50 63 subjected subject VBN cord-269150-d1sgnxc0 50 64 to to IN cord-269150-d1sgnxc0 50 65 three three CD cord-269150-d1sgnxc0 50 66 freeze freeze NN cord-269150-d1sgnxc0 50 67 - - HYPH cord-269150-d1sgnxc0 50 68 thaw thaw VB cord-269150-d1sgnxc0 50 69 cycles cycle NNS cord-269150-d1sgnxc0 50 70 at at IN cord-269150-d1sgnxc0 50 71 minus minus NN cord-269150-d1sgnxc0 50 72 80 80 CD cord-269150-d1sgnxc0 50 73 C c NN cord-269150-d1sgnxc0 50 74 and and CC cord-269150-d1sgnxc0 50 75 room room NN cord-269150-d1sgnxc0 50 76 temperature temperature NN cord-269150-d1sgnxc0 50 77 , , , cord-269150-d1sgnxc0 50 78 respectively respectively RB cord-269150-d1sgnxc0 50 79 ) ) -RRB- cord-269150-d1sgnxc0 50 80 for for IN cord-269150-d1sgnxc0 50 81 1 1 CD cord-269150-d1sgnxc0 50 82 h. h. NN cord-269150-d1sgnxc0 50 83 Infection infection NN cord-269150-d1sgnxc0 50 84 was be VBD cord-269150-d1sgnxc0 50 85 allowed allow VBN cord-269150-d1sgnxc0 50 86 to to TO cord-269150-d1sgnxc0 50 87 progress progress VB cord-269150-d1sgnxc0 50 88 for for IN cord-269150-d1sgnxc0 50 89 2 2 CD cord-269150-d1sgnxc0 50 90 h h NN cord-269150-d1sgnxc0 50 91 after after IN cord-269150-d1sgnxc0 50 92 virus virus NN cord-269150-d1sgnxc0 50 93 removal removal NN cord-269150-d1sgnxc0 50 94 and and CC cord-269150-d1sgnxc0 50 95 the the DT cord-269150-d1sgnxc0 50 96 cells cell NNS cord-269150-d1sgnxc0 50 97 were be VBD cord-269150-d1sgnxc0 50 98 treated treat VBN cord-269150-d1sgnxc0 50 99 with with IN cord-269150-d1sgnxc0 50 100 actinomycin actinomycin NNS cord-269150-d1sgnxc0 50 101 D D NNP cord-269150-d1sgnxc0 50 102 at at IN cord-269150-d1sgnxc0 50 103 15 15 CD cord-269150-d1sgnxc0 50 104 mg mg NNP cord-269150-d1sgnxc0 50 105 / / SYM cord-269150-d1sgnxc0 50 106 ml ml NNP cord-269150-d1sgnxc0 50 107 ( ( -LRB- cord-269150-d1sgnxc0 50 108 Sigma Sigma NNP cord-269150-d1sgnxc0 50 109 Aldrich Aldrich NNP cord-269150-d1sgnxc0 50 110 ) ) -RRB- cord-269150-d1sgnxc0 50 111 for for IN cord-269150-d1sgnxc0 50 112 4 4 CD cord-269150-d1sgnxc0 50 113 h h NN cord-269150-d1sgnxc0 50 114 ; ; : cord-269150-d1sgnxc0 50 115 1 1 CD cord-269150-d1sgnxc0 50 116 mM mm CD cord-269150-d1sgnxc0 50 117 of of IN cord-269150-d1sgnxc0 50 118 BrUTP BrUTP NNP cord-269150-d1sgnxc0 51 1 ( ( -LRB- cord-269150-d1sgnxc0 51 2 Sigma Sigma NNP cord-269150-d1sgnxc0 51 3 Aldrich Aldrich NNP cord-269150-d1sgnxc0 51 4 ) ) -RRB- cord-269150-d1sgnxc0 51 5 was be VBD cord-269150-d1sgnxc0 51 6 transfected transfecte VBN cord-269150-d1sgnxc0 51 7 into into IN cord-269150-d1sgnxc0 51 8 the the DT cord-269150-d1sgnxc0 51 9 cells cell NNS cord-269150-d1sgnxc0 51 10 with with IN cord-269150-d1sgnxc0 51 11 SuperFECT SuperFECT NNS cord-269150-d1sgnxc0 51 12 ( ( -LRB- cord-269150-d1sgnxc0 51 13 Qiagen Qiagen NNP cord-269150-d1sgnxc0 51 14 ) ) -RRB- cord-269150-d1sgnxc0 51 15 for for IN cord-269150-d1sgnxc0 51 16 3 3 CD cord-269150-d1sgnxc0 51 17 h. h. NNP cord-269150-d1sgnxc0 51 18 Cells cell NNS cord-269150-d1sgnxc0 51 19 were be VBD cord-269150-d1sgnxc0 51 20 fixed fix VBN cord-269150-d1sgnxc0 51 21 at at IN cord-269150-d1sgnxc0 51 22 10 10 CD cord-269150-d1sgnxc0 51 23 h h NN cord-269150-d1sgnxc0 51 24 post post NN cord-269150-d1sgnxc0 51 25 - - NN cord-269150-d1sgnxc0 51 26 infection infection NN cord-269150-d1sgnxc0 51 27 with with IN cord-269150-d1sgnxc0 51 28 4 4 CD cord-269150-d1sgnxc0 51 29 % % NN cord-269150-d1sgnxc0 51 30 paraformaldehyde paraformaldehyde NNP cord-269150-d1sgnxc0 51 31 for for IN cord-269150-d1sgnxc0 51 32 15 15 CD cord-269150-d1sgnxc0 51 33 min min NN cord-269150-d1sgnxc0 51 34 and and CC cord-269150-d1sgnxc0 51 35 permeabilized permeabilize VBN cord-269150-d1sgnxc0 51 36 with with IN cord-269150-d1sgnxc0 51 37 0.2 0.2 CD cord-269150-d1sgnxc0 51 38 % % NN cord-269150-d1sgnxc0 51 39 Triton Triton NNP cord-269150-d1sgnxc0 51 40 - - HYPH cord-269150-d1sgnxc0 51 41 X X NNP cord-269150-d1sgnxc0 51 42 100 100 CD cord-269150-d1sgnxc0 51 43 for for IN cord-269150-d1sgnxc0 51 44 10 10 CD cord-269150-d1sgnxc0 51 45 min min NN cord-269150-d1sgnxc0 51 46 . . . cord-269150-d1sgnxc0 52 1 Treated treat VBN cord-269150-d1sgnxc0 52 2 cells cell NNS cord-269150-d1sgnxc0 52 3 were be VBD cord-269150-d1sgnxc0 52 4 blocked block VBN cord-269150-d1sgnxc0 52 5 in in IN cord-269150-d1sgnxc0 52 6 10 10 CD cord-269150-d1sgnxc0 52 7 % % NN cord-269150-d1sgnxc0 52 8 goat goat NN cord-269150-d1sgnxc0 52 9 serum serum NN cord-269150-d1sgnxc0 52 10 , , , cord-269150-d1sgnxc0 52 11 stained stain VBN cord-269150-d1sgnxc0 52 12 with with IN cord-269150-d1sgnxc0 52 13 primary primary JJ cord-269150-d1sgnxc0 52 14 antibodies antibody NNS cord-269150-d1sgnxc0 52 15 mouse mouse NN cord-269150-d1sgnxc0 52 16 anti anti NNP cord-269150-d1sgnxc0 52 17 - - NNP cord-269150-d1sgnxc0 52 18 BrdU BrdU NNP cord-269150-d1sgnxc0 52 19 and and CC cord-269150-d1sgnxc0 52 20 rabbit rabbit NN cord-269150-d1sgnxc0 52 21 anti anti NNP cord-269150-d1sgnxc0 52 22 - - NNP cord-269150-d1sgnxc0 52 23 Flag flag JJ cord-269150-d1sgnxc0 52 24 ( ( -LRB- cord-269150-d1sgnxc0 52 25 Sigma Sigma NNP cord-269150-d1sgnxc0 52 26 Aldrich Aldrich NNP cord-269150-d1sgnxc0 52 27 ) ) -RRB- cord-269150-d1sgnxc0 52 28 and and CC cord-269150-d1sgnxc0 52 29 subsequently subsequently RB cord-269150-d1sgnxc0 52 30 probed probe VBD cord-269150-d1sgnxc0 52 31 with with IN cord-269150-d1sgnxc0 52 32 AlexaFluor AlexaFluor NNP cord-269150-d1sgnxc0 52 33 488 488 CD cord-269150-d1sgnxc0 52 34 anti anti JJ cord-269150-d1sgnxc0 52 35 - - JJ cord-269150-d1sgnxc0 52 36 rabbit rabbit JJ cord-269150-d1sgnxc0 52 37 and and CC cord-269150-d1sgnxc0 52 38 594 594 CD cord-269150-d1sgnxc0 52 39 anti anti JJ cord-269150-d1sgnxc0 52 40 - - JJ cord-269150-d1sgnxc0 52 41 mouse mouse NN cord-269150-d1sgnxc0 52 42 ( ( -LRB- cord-269150-d1sgnxc0 52 43 Invitrogen Invitrogen NNP cord-269150-d1sgnxc0 52 44 ) ) -RRB- cord-269150-d1sgnxc0 52 45 antibodies antibody NNS cord-269150-d1sgnxc0 52 46 . . . cord-269150-d1sgnxc0 53 1 Images image NNS cord-269150-d1sgnxc0 53 2 were be VBD cord-269150-d1sgnxc0 53 3 captured capture VBN cord-269150-d1sgnxc0 53 4 with with IN cord-269150-d1sgnxc0 53 5 Olympus Olympus NNP cord-269150-d1sgnxc0 53 6 Fluoview Fluoview NNP cord-269150-d1sgnxc0 53 7 Upright upright JJ cord-269150-d1sgnxc0 53 8 Confocal Confocal NNP cord-269150-d1sgnxc0 53 9 microscope microscope NN cord-269150-d1sgnxc0 53 10 using use VBG cord-269150-d1sgnxc0 53 11 a a DT cord-269150-d1sgnxc0 53 12 sequential sequential JJ cord-269150-d1sgnxc0 53 13 laser laser NN cord-269150-d1sgnxc0 53 14 scanning scanning NN cord-269150-d1sgnxc0 53 15 protocol protocol NN cord-269150-d1sgnxc0 53 16 . . . cord-269150-d1sgnxc0 54 1 H1299 H1299 NNP cord-269150-d1sgnxc0 54 2 cells cell NNS cord-269150-d1sgnxc0 54 3 grown grow VBN cord-269150-d1sgnxc0 54 4 to to IN cord-269150-d1sgnxc0 54 5 30 30 CD cord-269150-d1sgnxc0 54 6 % % NN cord-269150-d1sgnxc0 54 7 confluency confluency NN cord-269150-d1sgnxc0 54 8 were be VBD cord-269150-d1sgnxc0 54 9 transfected transfecte VBN cord-269150-d1sgnxc0 54 10 with with IN cord-269150-d1sgnxc0 54 11 100 100 CD cord-269150-d1sgnxc0 54 12 nM nm CD cord-269150-d1sgnxc0 54 13 of of IN cord-269150-d1sgnxc0 54 14 either either CC cord-269150-d1sgnxc0 54 15 siEGFP siEGFP NNP cord-269150-d1sgnxc0 54 16 ( ( -LRB- cord-269150-d1sgnxc0 54 17 5 5 CD cord-269150-d1sgnxc0 54 18 0 0 CD cord-269150-d1sgnxc0 54 19 -GCAACGUGACCC -GCAACGUGACCC . cord-269150-d1sgnxc0 55 1 UGAAGUUCdTdT-3 UGAAGUUCdTdT-3 NNP cord-269150-d1sgnxc0 55 2 0 0 CD cord-269150-d1sgnxc0 55 3 ) ) -RRB- cord-269150-d1sgnxc0 55 4 or or CC cord-269150-d1sgnxc0 55 5 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 55 6 ( ( -LRB- cord-269150-d1sgnxc0 55 7 5 5 CD cord-269150-d1sgnxc0 55 8 0 0 CD cord-269150-d1sgnxc0 55 9 -CAAUGACUU -CAAUGACUU . cord-269150-d1sgnxc0 56 1 GUACCGGAUAdTdT-3 GUACCGGAUAdTdT-3 NNP cord-269150-d1sgnxc0 56 2 0 0 CD cord-269150-d1sgnxc0 56 3 ) ) -RRB- cord-269150-d1sgnxc0 57 1 using use VBG cord-269150-d1sgnxc0 57 2 DharmaFECT DharmaFECT NNP cord-269150-d1sgnxc0 57 3 2 2 CD cord-269150-d1sgnxc0 57 4 siRNA siRNA NNP cord-269150-d1sgnxc0 57 5 Transfection Transfection NNP cord-269150-d1sgnxc0 57 6 Reagent Reagent NNP cord-269150-d1sgnxc0 57 7 ( ( -LRB- cord-269150-d1sgnxc0 57 8 Dharmacon Dharmacon NNP cord-269150-d1sgnxc0 57 9 ) ) -RRB- cord-269150-d1sgnxc0 57 10 for for IN cord-269150-d1sgnxc0 57 11 72 72 CD cord-269150-d1sgnxc0 57 12 h. h. NN cord-269150-d1sgnxc0 57 13 Cells cell NNS cord-269150-d1sgnxc0 57 14 were be VBD cord-269150-d1sgnxc0 57 15 infected infect VBN cord-269150-d1sgnxc0 57 16 with with IN cord-269150-d1sgnxc0 57 17 recombinant recombinant JJ cord-269150-d1sgnxc0 57 18 IBV IBV NNP cord-269150-d1sgnxc0 57 19 - - HYPH cord-269150-d1sgnxc0 57 20 Luc Luc NNP cord-269150-d1sgnxc0 57 21 at at IN cord-269150-d1sgnxc0 57 22 a a DT cord-269150-d1sgnxc0 57 23 multiplicity multiplicity NN cord-269150-d1sgnxc0 57 24 of of IN cord-269150-d1sgnxc0 57 25 infectivity infectivity NN cord-269150-d1sgnxc0 57 26 of of IN cord-269150-d1sgnxc0 57 27 $ $ $ cord-269150-d1sgnxc0 57 28 1 1 CD cord-269150-d1sgnxc0 57 29 ( ( -LRB- cord-269150-d1sgnxc0 57 30 MOI MOI NNP cord-269150-d1sgnxc0 57 31 & & CC cord-269150-d1sgnxc0 57 32 1 1 CD cord-269150-d1sgnxc0 57 33 ) ) -RRB- cord-269150-d1sgnxc0 57 34 and and CC cord-269150-d1sgnxc0 57 35 incubated incubate VBN cord-269150-d1sgnxc0 57 36 for for IN cord-269150-d1sgnxc0 57 37 2 2 CD cord-269150-d1sgnxc0 57 38 h h NN cord-269150-d1sgnxc0 57 39 at at IN cord-269150-d1sgnxc0 57 40 37 37 CD cord-269150-d1sgnxc0 57 41 C c NN cord-269150-d1sgnxc0 57 42 , , , cord-269150-d1sgnxc0 57 43 5 5 CD cord-269150-d1sgnxc0 57 44 % % NN cord-269150-d1sgnxc0 57 45 CO co NN cord-269150-d1sgnxc0 57 46 2 2 CD cord-269150-d1sgnxc0 57 47 . . . cord-269150-d1sgnxc0 58 1 The the DT cord-269150-d1sgnxc0 58 2 virus virus NN cord-269150-d1sgnxc0 58 3 - - HYPH cord-269150-d1sgnxc0 58 4 containing contain VBG cord-269150-d1sgnxc0 58 5 medium medium NN cord-269150-d1sgnxc0 58 6 was be VBD cord-269150-d1sgnxc0 58 7 replaced replace VBN cord-269150-d1sgnxc0 58 8 with with IN cord-269150-d1sgnxc0 58 9 fresh fresh JJ cord-269150-d1sgnxc0 58 10 serum serum NN cord-269150-d1sgnxc0 58 11 - - HYPH cord-269150-d1sgnxc0 58 12 free free JJ cord-269150-d1sgnxc0 58 13 medium medium NN cord-269150-d1sgnxc0 58 14 and and CC cord-269150-d1sgnxc0 58 15 the the DT cord-269150-d1sgnxc0 58 16 cells cell NNS cord-269150-d1sgnxc0 58 17 were be VBD cord-269150-d1sgnxc0 58 18 either either CC cord-269150-d1sgnxc0 58 19 harvested harvest VBN cord-269150-d1sgnxc0 58 20 immediately immediately RB cord-269150-d1sgnxc0 58 21 ( ( -LRB- cord-269150-d1sgnxc0 58 22 0 0 NFP cord-269150-d1sgnxc0 58 23 h h NN cord-269150-d1sgnxc0 58 24 ) ) -RRB- cord-269150-d1sgnxc0 58 25 or or CC cord-269150-d1sgnxc0 58 26 continued continue VBD cord-269150-d1sgnxc0 58 27 to to TO cord-269150-d1sgnxc0 58 28 be be VB cord-269150-d1sgnxc0 58 29 incubated incubate VBN cord-269150-d1sgnxc0 58 30 at at IN cord-269150-d1sgnxc0 58 31 37 37 CD cord-269150-d1sgnxc0 58 32 C c NN cord-269150-d1sgnxc0 58 33 until until IN cord-269150-d1sgnxc0 58 34 specific specific JJ cord-269150-d1sgnxc0 58 35 time time NN cord-269150-d1sgnxc0 58 36 points point NNS cord-269150-d1sgnxc0 58 37 post post NN cord-269150-d1sgnxc0 58 38 infection infection NN cord-269150-d1sgnxc0 58 39 ( ( -LRB- cord-269150-d1sgnxc0 58 40 4 4 CD cord-269150-d1sgnxc0 58 41 , , , cord-269150-d1sgnxc0 58 42 8 8 CD cord-269150-d1sgnxc0 58 43 , , , cord-269150-d1sgnxc0 58 44 12 12 CD cord-269150-d1sgnxc0 58 45 , , , cord-269150-d1sgnxc0 58 46 16 16 CD cord-269150-d1sgnxc0 58 47 , , , cord-269150-d1sgnxc0 58 48 20 20 CD cord-269150-d1sgnxc0 58 49 or or CC cord-269150-d1sgnxc0 58 50 24 24 CD cord-269150-d1sgnxc0 58 51 h h NN cord-269150-d1sgnxc0 58 52 ) ) -RRB- cord-269150-d1sgnxc0 58 53 . . . cord-269150-d1sgnxc0 59 1 Infected infected JJ cord-269150-d1sgnxc0 59 2 cells cell NNS cord-269150-d1sgnxc0 59 3 were be VBD cord-269150-d1sgnxc0 59 4 subjected subject VBN cord-269150-d1sgnxc0 59 5 to to IN cord-269150-d1sgnxc0 59 6 lysis lysis NN cord-269150-d1sgnxc0 59 7 , , , cord-269150-d1sgnxc0 59 8 either either CC cord-269150-d1sgnxc0 59 9 through through IN cord-269150-d1sgnxc0 59 10 three three CD cord-269150-d1sgnxc0 59 11 freeze freeze NN cord-269150-d1sgnxc0 59 12 - - HYPH cord-269150-d1sgnxc0 59 13 thaw thaw VB cord-269150-d1sgnxc0 59 14 cycles cycle NNS cord-269150-d1sgnxc0 59 15 ( ( -LRB- cord-269150-d1sgnxc0 59 16 at at IN cord-269150-d1sgnxc0 59 17 À80 À80 NNP cord-269150-d1sgnxc0 59 18 C C NNP cord-269150-d1sgnxc0 59 19 and and CC cord-269150-d1sgnxc0 59 20 room room NN cord-269150-d1sgnxc0 59 21 temperature temperature NN cord-269150-d1sgnxc0 59 22 , , , cord-269150-d1sgnxc0 59 23 respectively respectively RB cord-269150-d1sgnxc0 59 24 ) ) -RRB- cord-269150-d1sgnxc0 59 25 without without IN cord-269150-d1sgnxc0 59 26 removal removal NN cord-269150-d1sgnxc0 59 27 of of IN cord-269150-d1sgnxc0 59 28 media medium NNS cord-269150-d1sgnxc0 59 29 , , , cord-269150-d1sgnxc0 59 30 or or CC cord-269150-d1sgnxc0 59 31 using use VBG cord-269150-d1sgnxc0 59 32 lysis lysis NN cord-269150-d1sgnxc0 59 33 buffer buffer NN cord-269150-d1sgnxc0 59 34 after after IN cord-269150-d1sgnxc0 59 35 removal removal NN cord-269150-d1sgnxc0 59 36 of of IN cord-269150-d1sgnxc0 59 37 media medium NNS cord-269150-d1sgnxc0 59 38 . . . cord-269150-d1sgnxc0 60 1 Firefly Firefly NNP cord-269150-d1sgnxc0 60 2 luciferase luciferase NN cord-269150-d1sgnxc0 60 3 activity activity NN cord-269150-d1sgnxc0 60 4 which which WDT cord-269150-d1sgnxc0 60 5 was be VBD cord-269150-d1sgnxc0 60 6 used use VBN cord-269150-d1sgnxc0 60 7 as as IN cord-269150-d1sgnxc0 60 8 an an DT cord-269150-d1sgnxc0 60 9 indication indication NN cord-269150-d1sgnxc0 60 10 of of IN cord-269150-d1sgnxc0 60 11 viral viral JJ cord-269150-d1sgnxc0 60 12 activity activity NN cord-269150-d1sgnxc0 60 13 for for IN cord-269150-d1sgnxc0 60 14 the the DT cord-269150-d1sgnxc0 60 15 recombinant recombinant JJ cord-269150-d1sgnxc0 60 16 virus virus NN cord-269150-d1sgnxc0 60 17 was be VBD cord-269150-d1sgnxc0 60 18 measured measure VBN cord-269150-d1sgnxc0 60 19 using use VBG cord-269150-d1sgnxc0 60 20 Luciferase Luciferase NNP cord-269150-d1sgnxc0 60 21 Assay Assay NNP cord-269150-d1sgnxc0 60 22 System System NNP cord-269150-d1sgnxc0 60 23 ( ( -LRB- cord-269150-d1sgnxc0 60 24 Promega Promega NNP cord-269150-d1sgnxc0 60 25 ) ) -RRB- cord-269150-d1sgnxc0 60 26 according accord VBG cord-269150-d1sgnxc0 60 27 to to IN cord-269150-d1sgnxc0 60 28 manufacturer manufacturer NN cord-269150-d1sgnxc0 60 29 's 's POS cord-269150-d1sgnxc0 60 30 instructions instruction NNS cord-269150-d1sgnxc0 60 31 using use VBG cord-269150-d1sgnxc0 60 32 the the DT cord-269150-d1sgnxc0 60 33 cell cell NN cord-269150-d1sgnxc0 60 34 lysates lysate NNS cord-269150-d1sgnxc0 60 35 . . . cord-269150-d1sgnxc0 61 1 An an DT cord-269150-d1sgnxc0 61 2 end end NN cord-269150-d1sgnxc0 61 3 - - HYPH cord-269150-d1sgnxc0 61 4 point point NN cord-269150-d1sgnxc0 61 5 dilution dilution NN cord-269150-d1sgnxc0 61 6 assay assay NN cord-269150-d1sgnxc0 61 7 , , , cord-269150-d1sgnxc0 61 8 the the DT cord-269150-d1sgnxc0 61 9 50 50 CD cord-269150-d1sgnxc0 61 10 % % NN cord-269150-d1sgnxc0 61 11 tissue tissue NN cord-269150-d1sgnxc0 61 12 culture culture NN cord-269150-d1sgnxc0 61 13 infectious infectious JJ cord-269150-d1sgnxc0 61 14 dose dose NN cord-269150-d1sgnxc0 61 15 ( ( -LRB- cord-269150-d1sgnxc0 61 16 TCID TCID NNP cord-269150-d1sgnxc0 61 17 50 50 CD cord-269150-d1sgnxc0 61 18 ) ) -RRB- cord-269150-d1sgnxc0 61 19 , , , cord-269150-d1sgnxc0 61 20 the the DT cord-269150-d1sgnxc0 61 21 amount amount NN cord-269150-d1sgnxc0 61 22 of of IN cord-269150-d1sgnxc0 61 23 virus virus NN cord-269150-d1sgnxc0 61 24 that that WDT cord-269150-d1sgnxc0 61 25 will will MD cord-269150-d1sgnxc0 61 26 produce produce VB cord-269150-d1sgnxc0 61 27 pathological pathological JJ cord-269150-d1sgnxc0 61 28 change change NN cord-269150-d1sgnxc0 61 29 in in IN cord-269150-d1sgnxc0 61 30 50 50 CD cord-269150-d1sgnxc0 61 31 % % NN cord-269150-d1sgnxc0 61 32 of of IN cord-269150-d1sgnxc0 61 33 inoculated inoculate VBN cord-269150-d1sgnxc0 61 34 cell cell NN cord-269150-d1sgnxc0 61 35 culture culture NN cord-269150-d1sgnxc0 61 36 , , , cord-269150-d1sgnxc0 61 37 of of IN cord-269150-d1sgnxc0 61 38 the the DT cord-269150-d1sgnxc0 61 39 infected infected JJ cord-269150-d1sgnxc0 61 40 cells cell NNS cord-269150-d1sgnxc0 61 41 was be VBD cord-269150-d1sgnxc0 61 42 used use VBN cord-269150-d1sgnxc0 61 43 as as IN cord-269150-d1sgnxc0 61 44 a a DT cord-269150-d1sgnxc0 61 45 measurement measurement NN cord-269150-d1sgnxc0 61 46 of of IN cord-269150-d1sgnxc0 61 47 virus virus NN cord-269150-d1sgnxc0 61 48 titer titer NN cord-269150-d1sgnxc0 61 49 . . . cord-269150-d1sgnxc0 62 1 The the DT cord-269150-d1sgnxc0 62 2 TCID TCID NNP cord-269150-d1sgnxc0 62 3 50 50 CD cord-269150-d1sgnxc0 62 4 of of IN cord-269150-d1sgnxc0 62 5 the the DT cord-269150-d1sgnxc0 62 6 infected infected JJ cord-269150-d1sgnxc0 62 7 cells cell NNS cord-269150-d1sgnxc0 62 8 at at IN cord-269150-d1sgnxc0 62 9 each each DT cord-269150-d1sgnxc0 62 10 time time NN cord-269150-d1sgnxc0 62 11 point point NN cord-269150-d1sgnxc0 62 12 was be VBD cord-269150-d1sgnxc0 62 13 determined determine VBN cord-269150-d1sgnxc0 62 14 by by IN cord-269150-d1sgnxc0 62 15 using use VBG cord-269150-d1sgnxc0 62 16 the the DT cord-269150-d1sgnxc0 62 17 freeze freeze VB cord-269150-d1sgnxc0 62 18 - - HYPH cord-269150-d1sgnxc0 62 19 thawed thaw VBN cord-269150-d1sgnxc0 62 20 infected infected JJ cord-269150-d1sgnxc0 62 21 cells cell NNS cord-269150-d1sgnxc0 62 22 . . . cord-269150-d1sgnxc0 63 1 For for IN cord-269150-d1sgnxc0 63 2 each each DT cord-269150-d1sgnxc0 63 3 sample sample NN cord-269150-d1sgnxc0 63 4 , , , cord-269150-d1sgnxc0 63 5 a a DT cord-269150-d1sgnxc0 63 6 10-fold 10-fold JJ cord-269150-d1sgnxc0 63 7 serial serial JJ cord-269150-d1sgnxc0 63 8 dilution dilution NN cord-269150-d1sgnxc0 63 9 was be VBD cord-269150-d1sgnxc0 63 10 performed perform VBN cord-269150-d1sgnxc0 63 11 and and CC cord-269150-d1sgnxc0 63 12 five five CD cord-269150-d1sgnxc0 63 13 wells well NNS cord-269150-d1sgnxc0 63 14 of of IN cord-269150-d1sgnxc0 63 15 Vero Vero NNP cord-269150-d1sgnxc0 63 16 cells cell NNS cord-269150-d1sgnxc0 63 17 on on IN cord-269150-d1sgnxc0 63 18 96-well 96-well CD cord-269150-d1sgnxc0 63 19 plates plate NNS cord-269150-d1sgnxc0 63 20 were be VBD cord-269150-d1sgnxc0 63 21 infected infect VBN cord-269150-d1sgnxc0 63 22 with with IN cord-269150-d1sgnxc0 63 23 each each DT cord-269150-d1sgnxc0 63 24 dilution dilution NN cord-269150-d1sgnxc0 63 25 . . . cord-269150-d1sgnxc0 64 1 The the DT cord-269150-d1sgnxc0 64 2 numbers number NNS cord-269150-d1sgnxc0 64 3 of of IN cord-269150-d1sgnxc0 64 4 infected infected JJ cord-269150-d1sgnxc0 64 5 wells well NNS cord-269150-d1sgnxc0 64 6 were be VBD cord-269150-d1sgnxc0 64 7 collated collate VBN cord-269150-d1sgnxc0 64 8 and and CC cord-269150-d1sgnxc0 64 9 TCID TCID NNP cord-269150-d1sgnxc0 64 10 50 50 CD cord-269150-d1sgnxc0 64 11 of of IN cord-269150-d1sgnxc0 64 12 each each DT cord-269150-d1sgnxc0 64 13 sample sample NN cord-269150-d1sgnxc0 64 14 was be VBD cord-269150-d1sgnxc0 64 15 calculated calculate VBN cord-269150-d1sgnxc0 64 16 using use VBG cord-269150-d1sgnxc0 64 17 the the DT cord-269150-d1sgnxc0 64 18 Reed Reed NNP cord-269150-d1sgnxc0 64 19 - - HYPH cord-269150-d1sgnxc0 64 20 Muench Muench NNP cord-269150-d1sgnxc0 64 21 method method NN cord-269150-d1sgnxc0 64 22 ( ( -LRB- cord-269150-d1sgnxc0 64 23 5 5 CD cord-269150-d1sgnxc0 64 24 ) ) -RRB- cord-269150-d1sgnxc0 64 25 . . . cord-269150-d1sgnxc0 65 1 Reverse reverse JJ cord-269150-d1sgnxc0 65 2 transcription transcription NN cord-269150-d1sgnxc0 65 3 - - HYPH cord-269150-d1sgnxc0 65 4 polymerase polymerase NN cord-269150-d1sgnxc0 65 5 chain chain NN cord-269150-d1sgnxc0 65 6 reaction reaction NN cord-269150-d1sgnxc0 65 7 determination determination NN cord-269150-d1sgnxc0 65 8 of of IN cord-269150-d1sgnxc0 65 9 the the DT cord-269150-d1sgnxc0 65 10 replication replication NN cord-269150-d1sgnxc0 65 11 and and CC cord-269150-d1sgnxc0 65 12 sub sub JJ cord-269150-d1sgnxc0 65 13 - - JJ cord-269150-d1sgnxc0 65 14 genomic genomic JJ cord-269150-d1sgnxc0 65 15 transcription transcription NN cord-269150-d1sgnxc0 65 16 efficiency efficiency NN cord-269150-d1sgnxc0 65 17 of of IN cord-269150-d1sgnxc0 65 18 IBV IBV NNP cord-269150-d1sgnxc0 65 19 Total Total NNP cord-269150-d1sgnxc0 65 20 RNAs rna NNS cord-269150-d1sgnxc0 65 21 were be VBD cord-269150-d1sgnxc0 65 22 prepared prepare VBN cord-269150-d1sgnxc0 65 23 from from IN cord-269150-d1sgnxc0 65 24 the the DT cord-269150-d1sgnxc0 65 25 infected infected JJ cord-269150-d1sgnxc0 65 26 cells cell NNS cord-269150-d1sgnxc0 65 27 at at IN cord-269150-d1sgnxc0 65 28 their -PRON- PRP$ cord-269150-d1sgnxc0 65 29 specified specify VBN cord-269150-d1sgnxc0 65 30 time time NN cord-269150-d1sgnxc0 65 31 points point NNS cord-269150-d1sgnxc0 65 32 using use VBG cord-269150-d1sgnxc0 65 33 Trizol Trizol NNP cord-269150-d1sgnxc0 65 34 Reagent Reagent NNP cord-269150-d1sgnxc0 65 35 ( ( -LRB- cord-269150-d1sgnxc0 65 36 Invitrogen Invitrogen NNP cord-269150-d1sgnxc0 65 37 ) ) -RRB- cord-269150-d1sgnxc0 65 38 Reverse reverse NN cord-269150-d1sgnxc0 65 39 transcription transcription NN cord-269150-d1sgnxc0 65 40 ( ( -LRB- cord-269150-d1sgnxc0 65 41 RT RT NNP cord-269150-d1sgnxc0 65 42 ) ) -RRB- cord-269150-d1sgnxc0 65 43 was be VBD cord-269150-d1sgnxc0 65 44 performed perform VBN cord-269150-d1sgnxc0 65 45 with with IN cord-269150-d1sgnxc0 65 46 Expand expand VB cord-269150-d1sgnxc0 65 47 reverse reverse NN cord-269150-d1sgnxc0 65 48 transcriptase transcriptase NN cord-269150-d1sgnxc0 65 49 ( ( -LRB- cord-269150-d1sgnxc0 65 50 Roche Roche NNP cord-269150-d1sgnxc0 65 51 ) ) -RRB- cord-269150-d1sgnxc0 65 52 according accord VBG cord-269150-d1sgnxc0 65 53 to to IN cord-269150-d1sgnxc0 65 54 the the DT cord-269150-d1sgnxc0 65 55 manufacturer manufacturer NN cord-269150-d1sgnxc0 65 56 's 's POS cord-269150-d1sgnxc0 65 57 instructions instruction NNS cord-269150-d1sgnxc0 65 58 using use VBG cord-269150-d1sgnxc0 65 59 the the DT cord-269150-d1sgnxc0 65 60 sense sense NN cord-269150-d1sgnxc0 65 61 primer primer NN cord-269150-d1sgnxc0 65 62 IBV IBV NNP cord-269150-d1sgnxc0 65 63 leader leader NN cord-269150-d1sgnxc0 65 64 ( ( -LRB- cord-269150-d1sgnxc0 65 65 5 5 CD cord-269150-d1sgnxc0 65 66 0 0 CD cord-269150-d1sgnxc0 65 67 -26CTATTACACTAGCCTTGCGCT46 -26CTATTACACTAGCCTTGCGCT46 : cord-269150-d1sgnxc0 65 68 - - SYM cord-269150-d1sgnxc0 65 69 3 3 CD cord-269150-d1sgnxc0 65 70 0 0 CD cord-269150-d1sgnxc0 65 71 ) ) -RRB- cord-269150-d1sgnxc0 65 72 for for IN cord-269150-d1sgnxc0 65 73 the the DT cord-269150-d1sgnxc0 65 74 detection detection NN cord-269150-d1sgnxc0 65 75 of of IN cord-269150-d1sgnxc0 65 76 negative negative JJ cord-269150-d1sgnxc0 65 77 - - HYPH cord-269150-d1sgnxc0 65 78 stranded stranded JJ cord-269150-d1sgnxc0 65 79 subgenomic subgenomic NNP cord-269150-d1sgnxc0 65 80 RNA RNA NNP cord-269150-d1sgnxc0 65 81 ( ( -LRB- cord-269150-d1sgnxc0 65 82 sgRNA sgRNA VBG cord-269150-d1sgnxc0 65 83 ) ) -RRB- cord-269150-d1sgnxc0 65 84 and and CC cord-269150-d1sgnxc0 65 85 the the DT cord-269150-d1sgnxc0 65 86 antisense antisense NN cord-269150-d1sgnxc0 65 87 primer primer NN cord-269150-d1sgnxc0 65 88 IBV24803-R IBV24803-R NNP cord-269150-d1sgnxc0 65 89 ( ( -LRB- cord-269150-d1sgnxc0 65 90 5 5 CD cord-269150-d1sgnxc0 65 91 0 0 CD cord-269150-d1sgnxc0 65 92 -24803CTCTGG -24803CTCTGG HYPH cord-269150-d1sgnxc0 65 93 ATCCAATAACCTAC24784 ATCCAATAACCTAC24784 NNP cord-269150-d1sgnxc0 65 94 - - HYPH cord-269150-d1sgnxc0 65 95 3 3 CD cord-269150-d1sgnxc0 65 96 0 0 CD cord-269150-d1sgnxc0 65 97 ) ) -RRB- cord-269150-d1sgnxc0 65 98 for for IN cord-269150-d1sgnxc0 65 99 the the DT cord-269150-d1sgnxc0 65 100 detection detection NN cord-269150-d1sgnxc0 65 101 of of IN cord-269150-d1sgnxc0 65 102 positive positive JJ cord-269150-d1sgnxc0 65 103 - - HYPH cord-269150-d1sgnxc0 65 104 stranded strand VBN cord-269150-d1sgnxc0 65 105 sgRNA sgrna NN cord-269150-d1sgnxc0 65 106 . . . cord-269150-d1sgnxc0 66 1 Both both DT cord-269150-d1sgnxc0 66 2 primers primer NNS cord-269150-d1sgnxc0 66 3 were be VBD cord-269150-d1sgnxc0 66 4 then then RB cord-269150-d1sgnxc0 66 5 used use VBN cord-269150-d1sgnxc0 66 6 for for IN cord-269150-d1sgnxc0 66 7 PCR PCR NNP cord-269150-d1sgnxc0 66 8 . . . cord-269150-d1sgnxc0 67 1 If if IN cord-269150-d1sgnxc0 67 2 transcription transcription NN cord-269150-d1sgnxc0 67 3 of of IN cord-269150-d1sgnxc0 67 4 subgenomic subgenomic NNP cord-269150-d1sgnxc0 67 5 mRNAs mRNAs NNPS cord-269150-d1sgnxc0 67 6 did do VBD cord-269150-d1sgnxc0 67 7 occur occur VB cord-269150-d1sgnxc0 67 8 , , , cord-269150-d1sgnxc0 67 9 a a DT cord-269150-d1sgnxc0 67 10 415-bp 415-bp CD cord-269150-d1sgnxc0 67 11 PCR PCR NNP cord-269150-d1sgnxc0 67 12 product product NN cord-269150-d1sgnxc0 67 13 corresponding correspond VBG cord-269150-d1sgnxc0 67 14 to to IN cord-269150-d1sgnxc0 67 15 the the DT cord-269150-d1sgnxc0 67 16 5 5 CD cord-269150-d1sgnxc0 67 17 0 0 CD cord-269150-d1sgnxc0 67 18 -terminal -terminal JJ cord-269150-d1sgnxc0 67 19 region region NN cord-269150-d1sgnxc0 67 20 of of IN cord-269150-d1sgnxc0 67 21 subgenomic subgenomic NNP cord-269150-d1sgnxc0 67 22 mRNA mRNA NNP cord-269150-d1sgnxc0 67 23 5 5 CD cord-269150-d1sgnxc0 67 24 and and CC cord-269150-d1sgnxc0 67 25 a a DT cord-269150-d1sgnxc0 67 26 648-bp 648-bp CD cord-269150-d1sgnxc0 67 27 fragment fragment NN cord-269150-d1sgnxc0 67 28 corresponding correspond VBG cord-269150-d1sgnxc0 67 29 to to IN cord-269150-d1sgnxc0 67 30 the the DT cord-269150-d1sgnxc0 67 31 5 5 CD cord-269150-d1sgnxc0 67 32 0 0 CD cord-269150-d1sgnxc0 67 33 -terminal -terminal JJ cord-269150-d1sgnxc0 67 34 region region NN cord-269150-d1sgnxc0 67 35 of of IN cord-269150-d1sgnxc0 67 36 subgenomic subgenomic NNP cord-269150-d1sgnxc0 67 37 mRNA mRNA NNP cord-269150-d1sgnxc0 67 38 4 4 CD cord-269150-d1sgnxc0 67 39 would would MD cord-269150-d1sgnxc0 67 40 be be VB cord-269150-d1sgnxc0 67 41 expected expect VBN cord-269150-d1sgnxc0 67 42 . . . cord-269150-d1sgnxc0 68 1 Similarly similarly RB cord-269150-d1sgnxc0 68 2 , , , cord-269150-d1sgnxc0 68 3 RT RT NNP cord-269150-d1sgnxc0 68 4 was be VBD cord-269150-d1sgnxc0 68 5 carried carry VBN cord-269150-d1sgnxc0 68 6 out out RP cord-269150-d1sgnxc0 68 7 with with IN cord-269150-d1sgnxc0 68 8 the the DT cord-269150-d1sgnxc0 68 9 sense sense NN cord-269150-d1sgnxc0 68 10 primer primer NN cord-269150-d1sgnxc0 68 11 IBV14931-F IBV14931-F '' cord-269150-d1sgnxc0 68 12 ( ( -LRB- cord-269150-d1sgnxc0 68 13 5 5 CD cord-269150-d1sgnxc0 68 14 0 0 CD cord-269150-d1sgnxc0 68 15 -14931GCTTATCCACTAGTACATC14949 -14931GCTTATCCACTAGTACATC14949 : cord-269150-d1sgnxc0 68 16 - - HYPH cord-269150-d1sgnxc0 68 17 3 3 CD cord-269150-d1sgnxc0 68 18 0 0 CD cord-269150-d1sgnxc0 68 19 ) ) -RRB- cord-269150-d1sgnxc0 68 20 for for IN cord-269150-d1sgnxc0 68 21 the the DT cord-269150-d1sgnxc0 68 22 detection detection NN cord-269150-d1sgnxc0 68 23 of of IN cord-269150-d1sgnxc0 68 24 negative negative JJ cord-269150-d1sgnxc0 68 25 - - HYPH cord-269150-d1sgnxc0 68 26 stranded stranded JJ cord-269150-d1sgnxc0 68 27 genomic genomic JJ cord-269150-d1sgnxc0 68 28 RNA RNA NNP cord-269150-d1sgnxc0 68 29 . . . cord-269150-d1sgnxc0 69 1 Sense sense NN cord-269150-d1sgnxc0 69 2 primer primer NN cord-269150-d1sgnxc0 69 3 IBV14931-F ibv14931-f PRP cord-269150-d1sgnxc0 69 4 and and CC cord-269150-d1sgnxc0 69 5 the the DT cord-269150-d1sgnxc0 69 6 antisense antisense NN cord-269150-d1sgnxc0 69 7 primer primer VBP cord-269150-d1sgnxc0 69 8 IBV15600-R IBV15600-R NNP cord-269150-d1sgnxc0 69 9 ( ( -LRB- cord-269150-d1sgnxc0 69 10 5 5 CD cord-269150-d1sgnxc0 69 11 0 0 CD cord-269150-d1sgnxc0 69 12 -15600CTTCTCGCACTTCTGCACTAGCA15578 -15600cttctcgcacttctgcactagca15578 CD cord-269150-d1sgnxc0 69 13 - - SYM cord-269150-d1sgnxc0 69 14 3 3 CD cord-269150-d1sgnxc0 69 15 0 0 CD cord-269150-d1sgnxc0 69 16 ) ) -RRB- cord-269150-d1sgnxc0 69 17 were be VBD cord-269150-d1sgnxc0 69 18 used use VBN cord-269150-d1sgnxc0 69 19 for for IN cord-269150-d1sgnxc0 69 20 PCR PCR NNP cord-269150-d1sgnxc0 69 21 . . . cord-269150-d1sgnxc0 70 1 If if IN cord-269150-d1sgnxc0 70 2 replication replication NN cord-269150-d1sgnxc0 70 3 of of IN cord-269150-d1sgnxc0 70 4 viral viral JJ cord-269150-d1sgnxc0 70 5 RNA RNA NNP cord-269150-d1sgnxc0 70 6 occurred occur VBD cord-269150-d1sgnxc0 70 7 , , , cord-269150-d1sgnxc0 70 8 a a DT cord-269150-d1sgnxc0 70 9 670-bp 670-bp CD cord-269150-d1sgnxc0 70 10 PCR PCR NNP cord-269150-d1sgnxc0 70 11 fragment fragment NN cord-269150-d1sgnxc0 70 12 would would MD cord-269150-d1sgnxc0 70 13 be be VB cord-269150-d1sgnxc0 70 14 expected expect VBN cord-269150-d1sgnxc0 70 15 . . . cord-269150-d1sgnxc0 71 1 Oligonucleotides oligonucleotide NNS cord-269150-d1sgnxc0 71 2 were be VBD cord-269150-d1sgnxc0 71 3 designed design VBN cord-269150-d1sgnxc0 71 4 based base VBN cord-269150-d1sgnxc0 71 5 on on IN cord-269150-d1sgnxc0 71 6 siMadp1 simadp1 JJ cord-269150-d1sgnxc0 71 7 sequence sequence NN cord-269150-d1sgnxc0 71 8 and and CC cord-269150-d1sgnxc0 71 9 cloned clone VBN cord-269150-d1sgnxc0 71 10 into into IN cord-269150-d1sgnxc0 71 11 pSilencer pSilencer NNP cord-269150-d1sgnxc0 71 12 2.1 2.1 CD cord-269150-d1sgnxc0 71 13 Neo Neo NNP cord-269150-d1sgnxc0 71 14 ( ( -LRB- cord-269150-d1sgnxc0 71 15 Ambion Ambion NNP cord-269150-d1sgnxc0 71 16 ) ) -RRB- cord-269150-d1sgnxc0 71 17 according accord VBG cord-269150-d1sgnxc0 71 18 to to IN cord-269150-d1sgnxc0 71 19 manufacturer manufacturer NN cord-269150-d1sgnxc0 71 20 's 's POS cord-269150-d1sgnxc0 71 21 instructions instruction NNS cord-269150-d1sgnxc0 71 22 . . . cord-269150-d1sgnxc0 72 1 Negative negative JJ cord-269150-d1sgnxc0 72 2 control control NN cord-269150-d1sgnxc0 72 3 silencer silencer NN cord-269150-d1sgnxc0 72 4 construct construct NN cord-269150-d1sgnxc0 72 5 was be VBD cord-269150-d1sgnxc0 72 6 supplied supply VBN cord-269150-d1sgnxc0 72 7 with with IN cord-269150-d1sgnxc0 72 8 the the DT cord-269150-d1sgnxc0 72 9 cloning cloning NN cord-269150-d1sgnxc0 72 10 kit kit NN cord-269150-d1sgnxc0 72 11 . . . cord-269150-d1sgnxc0 73 1 Constructs construct NNS cord-269150-d1sgnxc0 73 2 pSilencer pSilencer NNP cord-269150-d1sgnxc0 73 3 - - HYPH cord-269150-d1sgnxc0 73 4 NC NC NNP cord-269150-d1sgnxc0 73 5 ( ( -LRB- cord-269150-d1sgnxc0 73 6 negative negative JJ cord-269150-d1sgnxc0 73 7 control control NN cord-269150-d1sgnxc0 73 8 ) ) -RRB- cord-269150-d1sgnxc0 73 9 and and CC cord-269150-d1sgnxc0 73 10 pSilencer pSilencer NNP cord-269150-d1sgnxc0 73 11 - - HYPH cord-269150-d1sgnxc0 73 12 Madp1 Madp1 NNP cord-269150-d1sgnxc0 73 13 were be VBD cord-269150-d1sgnxc0 73 14 transfected transfecte VBN cord-269150-d1sgnxc0 73 15 into into IN cord-269150-d1sgnxc0 73 16 H1299 H1299 NNP cord-269150-d1sgnxc0 73 17 cells cell NNS cord-269150-d1sgnxc0 73 18 with with IN cord-269150-d1sgnxc0 73 19 Effectene Effectene NNP cord-269150-d1sgnxc0 73 20 Transfection Transfection NNP cord-269150-d1sgnxc0 73 21 Reagent Reagent NNP cord-269150-d1sgnxc0 73 22 . . . cord-269150-d1sgnxc0 74 1 Transfected transfected JJ cord-269150-d1sgnxc0 74 2 cells cell NNS cord-269150-d1sgnxc0 74 3 were be VBD cord-269150-d1sgnxc0 74 4 selected select VBN cord-269150-d1sgnxc0 74 5 with with IN cord-269150-d1sgnxc0 74 6 500 500 CD cord-269150-d1sgnxc0 74 7 mg mg NNP cord-269150-d1sgnxc0 74 8 / / SYM cord-269150-d1sgnxc0 74 9 ml ml NNP cord-269150-d1sgnxc0 74 10 G418 G418 NNP cord-269150-d1sgnxc0 74 11 ( ( -LRB- cord-269150-d1sgnxc0 74 12 Sigma Sigma NNP cord-269150-d1sgnxc0 74 13 ) ) -RRB- cord-269150-d1sgnxc0 74 14 and and CC cord-269150-d1sgnxc0 74 15 the the DT cord-269150-d1sgnxc0 74 16 selected select VBN cord-269150-d1sgnxc0 74 17 clones clone NNS cord-269150-d1sgnxc0 74 18 were be VBD cord-269150-d1sgnxc0 74 19 subjected subject VBN cord-269150-d1sgnxc0 74 20 to to IN cord-269150-d1sgnxc0 74 21 screening screen VBG cord-269150-d1sgnxc0 74 22 for for IN cord-269150-d1sgnxc0 74 23 MADP1 MADP1 NNP cord-269150-d1sgnxc0 74 24 knockdown knockdown NN cord-269150-d1sgnxc0 74 25 efficiency efficiency NN cord-269150-d1sgnxc0 74 26 . . . cord-269150-d1sgnxc0 75 1 Selected select VBN cord-269150-d1sgnxc0 75 2 H1299-shNC H1299-shNC NNP cord-269150-d1sgnxc0 75 3 and and CC cord-269150-d1sgnxc0 75 4 H1299-shMadp1 H1299-shMadp1 NNP cord-269150-d1sgnxc0 75 5 stable stable JJ cord-269150-d1sgnxc0 75 6 cell cell NN cord-269150-d1sgnxc0 75 7 lines line NNS cord-269150-d1sgnxc0 75 8 were be VBD cord-269150-d1sgnxc0 75 9 maintained maintain VBN cord-269150-d1sgnxc0 75 10 in in IN cord-269150-d1sgnxc0 75 11 media medium NNS cord-269150-d1sgnxc0 75 12 containing contain VBG cord-269150-d1sgnxc0 75 13 500 500 CD cord-269150-d1sgnxc0 75 14 mg mg NNP cord-269150-d1sgnxc0 75 15 / / SYM cord-269150-d1sgnxc0 75 16 ml ml NNS cord-269150-d1sgnxc0 75 17 of of IN cord-269150-d1sgnxc0 75 18 G418 G418 NNPS cord-269150-d1sgnxc0 75 19 . . . cord-269150-d1sgnxc0 76 1 In in IN cord-269150-d1sgnxc0 76 2 order order NN cord-269150-d1sgnxc0 76 3 to to TO cord-269150-d1sgnxc0 76 4 find find VB cord-269150-d1sgnxc0 76 5 candidate candidate NN cord-269150-d1sgnxc0 76 6 host host NN cord-269150-d1sgnxc0 76 7 proteins protein NNS cord-269150-d1sgnxc0 76 8 that that WDT cord-269150-d1sgnxc0 76 9 may may MD cord-269150-d1sgnxc0 76 10 be be VB cord-269150-d1sgnxc0 76 11 involved involve VBN cord-269150-d1sgnxc0 76 12 in in IN cord-269150-d1sgnxc0 76 13 the the DT cord-269150-d1sgnxc0 76 14 replication replication NN cord-269150-d1sgnxc0 76 15 and and CC cord-269150-d1sgnxc0 76 16 transcription transcription NN cord-269150-d1sgnxc0 76 17 of of IN cord-269150-d1sgnxc0 76 18 coronavirus coronavirus NN cord-269150-d1sgnxc0 76 19 RNA RNA NNP cord-269150-d1sgnxc0 76 20 , , , cord-269150-d1sgnxc0 76 21 a a DT cord-269150-d1sgnxc0 76 22 yeast yeast NN cord-269150-d1sgnxc0 76 23 - - HYPH cord-269150-d1sgnxc0 76 24 based base VBN cord-269150-d1sgnxc0 76 25 three three CD cord-269150-d1sgnxc0 76 26 - - HYPH cord-269150-d1sgnxc0 76 27 hybrid hybrid NN cord-269150-d1sgnxc0 76 28 ( ( -LRB- cord-269150-d1sgnxc0 76 29 34 34 CD cord-269150-d1sgnxc0 76 30 ) ) -RRB- cord-269150-d1sgnxc0 76 31 screen screen NN cord-269150-d1sgnxc0 76 32 against against IN cord-269150-d1sgnxc0 76 33 a a DT cord-269150-d1sgnxc0 76 34 human human JJ cord-269150-d1sgnxc0 76 35 cDNA cdna NN cord-269150-d1sgnxc0 76 36 library library NN cord-269150-d1sgnxc0 76 37 using use VBG cord-269150-d1sgnxc0 76 38 the the DT cord-269150-d1sgnxc0 76 39 5 5 CD cord-269150-d1sgnxc0 76 40 0 0 CD cord-269150-d1sgnxc0 76 41 -UTR -utr NN cord-269150-d1sgnxc0 76 42 of of IN cord-269150-d1sgnxc0 76 43 SARS SARS NNP cord-269150-d1sgnxc0 76 44 - - HYPH cord-269150-d1sgnxc0 76 45 CoV CoV NNP cord-269150-d1sgnxc0 76 46 RNA RNA NNP cord-269150-d1sgnxc0 76 47 as as IN cord-269150-d1sgnxc0 76 48 bait bait NN cord-269150-d1sgnxc0 76 49 was be VBD cord-269150-d1sgnxc0 76 50 performed perform VBN cord-269150-d1sgnxc0 76 51 . . . cord-269150-d1sgnxc0 77 1 Screens screen NNS cord-269150-d1sgnxc0 77 2 were be VBD cord-269150-d1sgnxc0 77 3 also also RB cord-269150-d1sgnxc0 77 4 performed perform VBN cord-269150-d1sgnxc0 77 5 using use VBG cord-269150-d1sgnxc0 77 6 the the DT cord-269150-d1sgnxc0 77 7 negative negative JJ cord-269150-d1sgnxc0 77 8 sense sense NN cord-269150-d1sgnxc0 77 9 5 5 CD cord-269150-d1sgnxc0 77 10 0 0 CD cord-269150-d1sgnxc0 77 11 -UTR -utr NN cord-269150-d1sgnxc0 77 12 and and CC cord-269150-d1sgnxc0 77 13 3 3 CD cord-269150-d1sgnxc0 77 14 0 0 CD cord-269150-d1sgnxc0 77 15 -UTR -utr NN cord-269150-d1sgnxc0 77 16 as as IN cord-269150-d1sgnxc0 77 17 bait bait NN cord-269150-d1sgnxc0 77 18 . . . cord-269150-d1sgnxc0 78 1 Each each DT cord-269150-d1sgnxc0 78 2 screen screen NN cord-269150-d1sgnxc0 78 3 yielded yield VBD cord-269150-d1sgnxc0 78 4 about about RB cord-269150-d1sgnxc0 78 5 six six CD cord-269150-d1sgnxc0 78 6 to to TO cord-269150-d1sgnxc0 78 7 eight eight CD cord-269150-d1sgnxc0 78 8 colonies colony NNS cord-269150-d1sgnxc0 78 9 which which WDT cord-269150-d1sgnxc0 78 10 were be VBD cord-269150-d1sgnxc0 78 11 sequenced sequence VBN cord-269150-d1sgnxc0 78 12 and and CC cord-269150-d1sgnxc0 78 13 non non JJ cord-269150-d1sgnxc0 78 14 - - JJ cord-269150-d1sgnxc0 78 15 sense sense JJ cord-269150-d1sgnxc0 78 16 sequences sequence NNS cord-269150-d1sgnxc0 78 17 of of IN cord-269150-d1sgnxc0 78 18 the the DT cord-269150-d1sgnxc0 78 19 candidates candidate NNS cord-269150-d1sgnxc0 78 20 were be VBD cord-269150-d1sgnxc0 78 21 eliminated eliminate VBN cord-269150-d1sgnxc0 78 22 . . . cord-269150-d1sgnxc0 79 1 In in IN cord-269150-d1sgnxc0 79 2 total total NN cord-269150-d1sgnxc0 79 3 , , , cord-269150-d1sgnxc0 79 4 the the DT cord-269150-d1sgnxc0 79 5 screen screen NN cord-269150-d1sgnxc0 79 6 identified identify VBD cord-269150-d1sgnxc0 79 7 three three CD cord-269150-d1sgnxc0 79 8 candidates candidate NNS cord-269150-d1sgnxc0 79 9 , , , cord-269150-d1sgnxc0 79 10 MADP1 MADP1 NNP cord-269150-d1sgnxc0 79 11 , , , cord-269150-d1sgnxc0 79 12 HAX1 HAX1 NNP cord-269150-d1sgnxc0 79 13 and and CC cord-269150-d1sgnxc0 79 14 ribosomal ribosomal JJ cord-269150-d1sgnxc0 79 15 protein protein NN cord-269150-d1sgnxc0 79 16 L27a l27a NN cord-269150-d1sgnxc0 79 17 as as IN cord-269150-d1sgnxc0 79 18 binding bind VBG cord-269150-d1sgnxc0 79 19 partners partner NNS cord-269150-d1sgnxc0 79 20 to to IN cord-269150-d1sgnxc0 79 21 SARS SARS NNP cord-269150-d1sgnxc0 79 22 - - HYPH cord-269150-d1sgnxc0 79 23 CoV CoV NNP cord-269150-d1sgnxc0 79 24 positive positive JJ cord-269150-d1sgnxc0 79 25 sense sense NN cord-269150-d1sgnxc0 79 26 5 5 CD cord-269150-d1sgnxc0 79 27 0 0 CD cord-269150-d1sgnxc0 79 28 -UTR -utr NN cord-269150-d1sgnxc0 79 29 , , , cord-269150-d1sgnxc0 79 30 negative negative JJ cord-269150-d1sgnxc0 79 31 sense sense NN cord-269150-d1sgnxc0 79 32 5 5 CD cord-269150-d1sgnxc0 79 33 0 0 CD cord-269150-d1sgnxc0 79 34 -UTR -utr NN cord-269150-d1sgnxc0 79 35 and and CC cord-269150-d1sgnxc0 79 36 negative negative JJ cord-269150-d1sgnxc0 79 37 sense sense NN cord-269150-d1sgnxc0 79 38 3 3 CD cord-269150-d1sgnxc0 79 39 0 0 CD cord-269150-d1sgnxc0 79 40 -UTR -utr NN cord-269150-d1sgnxc0 79 41 , , , cord-269150-d1sgnxc0 79 42 respectively respectively RB cord-269150-d1sgnxc0 79 43 . . . cord-269150-d1sgnxc0 80 1 Although although IN cord-269150-d1sgnxc0 80 2 it -PRON- PRP cord-269150-d1sgnxc0 80 3 was be VBD cord-269150-d1sgnxc0 80 4 interesting interesting JJ cord-269150-d1sgnxc0 80 5 to to TO cord-269150-d1sgnxc0 80 6 find find VB cord-269150-d1sgnxc0 80 7 ribosomal ribosomal JJ cord-269150-d1sgnxc0 80 8 protein protein NN cord-269150-d1sgnxc0 80 9 L27a l27a NN cord-269150-d1sgnxc0 80 10 interacting interact VBG cord-269150-d1sgnxc0 80 11 with with IN cord-269150-d1sgnxc0 80 12 the the DT cord-269150-d1sgnxc0 80 13 Table Table NNP cord-269150-d1sgnxc0 80 14 1 1 CD cord-269150-d1sgnxc0 80 15 . . . cord-269150-d1sgnxc0 81 1 Nucleotide nucleotide JJ cord-269150-d1sgnxc0 81 2 sequences sequence NNS cord-269150-d1sgnxc0 81 3 of of IN cord-269150-d1sgnxc0 81 4 primers primer NNS cord-269150-d1sgnxc0 81 5 used use VBN cord-269150-d1sgnxc0 81 6 to to TO cord-269150-d1sgnxc0 81 7 amplify amplify VB cord-269150-d1sgnxc0 81 8 DNA dna NN cord-269150-d1sgnxc0 81 9 templates template NNS cord-269150-d1sgnxc0 81 10 for for IN cord-269150-d1sgnxc0 81 11 in in FW cord-269150-d1sgnxc0 81 12 vitro vitro FW cord-269150-d1sgnxc0 81 13 transcription transcription NN cord-269150-d1sgnxc0 81 14 Primer Primer NNP cord-269150-d1sgnxc0 81 15 name name NN cord-269150-d1sgnxc0 81 16 Sequence sequence NN cord-269150-d1sgnxc0 81 17 _SP cord-269150-d1sgnxc0 82 1 T7_EGFP_510 T7_EGFP_510 NNP cord-269150-d1sgnxc0 82 2 - - HYPH cord-269150-d1sgnxc0 82 3 528R 528r CD cord-269150-d1sgnxc0 83 1 pT_EGFP_F pT_EGFP_F NNP cord-269150-d1sgnxc0 83 2 anti anti JJ cord-269150-d1sgnxc0 83 3 - - JJ cord-269150-d1sgnxc0 83 4 sense sense JJ cord-269150-d1sgnxc0 83 5 3 3 CD cord-269150-d1sgnxc0 83 6 0 0 CD cord-269150-d1sgnxc0 83 7 -UTR -utr NN cord-269150-d1sgnxc0 83 8 , , , cord-269150-d1sgnxc0 83 9 which which WDT cord-269150-d1sgnxc0 83 10 was be VBD cord-269150-d1sgnxc0 83 11 not not RB cord-269150-d1sgnxc0 83 12 required require VBN cord-269150-d1sgnxc0 83 13 for for IN cord-269150-d1sgnxc0 83 14 viral viral JJ cord-269150-d1sgnxc0 83 15 protein protein NN cord-269150-d1sgnxc0 83 16 translation translation NN cord-269150-d1sgnxc0 84 1 , , , cord-269150-d1sgnxc0 84 2 subsequent subsequent JJ cord-269150-d1sgnxc0 84 3 functional functional JJ cord-269150-d1sgnxc0 84 4 studies study NNS cord-269150-d1sgnxc0 84 5 of of IN cord-269150-d1sgnxc0 84 6 the the DT cord-269150-d1sgnxc0 84 7 protein protein NN cord-269150-d1sgnxc0 84 8 would would MD cord-269150-d1sgnxc0 84 9 prove prove VB cord-269150-d1sgnxc0 84 10 to to TO cord-269150-d1sgnxc0 84 11 be be VB cord-269150-d1sgnxc0 84 12 complicated complicate VBN cord-269150-d1sgnxc0 84 13 as as IN cord-269150-d1sgnxc0 84 14 the the DT cord-269150-d1sgnxc0 84 15 virus virus NN cord-269150-d1sgnxc0 84 16 itself -PRON- PRP cord-269150-d1sgnxc0 84 17 relies rely VBZ cord-269150-d1sgnxc0 84 18 heavily heavily RB cord-269150-d1sgnxc0 84 19 on on IN cord-269150-d1sgnxc0 84 20 the the DT cord-269150-d1sgnxc0 84 21 host host NN cord-269150-d1sgnxc0 84 22 ribosome ribosome NN cord-269150-d1sgnxc0 84 23 to to TO cord-269150-d1sgnxc0 84 24 translate translate VB cord-269150-d1sgnxc0 84 25 viral viral JJ cord-269150-d1sgnxc0 84 26 proteins protein NNS cord-269150-d1sgnxc0 84 27 , , , cord-269150-d1sgnxc0 84 28 necessary necessary JJ cord-269150-d1sgnxc0 84 29 for for IN cord-269150-d1sgnxc0 84 30 the the DT cord-269150-d1sgnxc0 84 31 infection infection NN cord-269150-d1sgnxc0 84 32 to to TO cord-269150-d1sgnxc0 84 33 proceed proceed VB cord-269150-d1sgnxc0 84 34 . . . cord-269150-d1sgnxc0 85 1 Therefore therefore RB cord-269150-d1sgnxc0 85 2 , , , cord-269150-d1sgnxc0 85 3 it -PRON- PRP cord-269150-d1sgnxc0 85 4 was be VBD cord-269150-d1sgnxc0 85 5 not not RB cord-269150-d1sgnxc0 85 6 chosen choose VBN cord-269150-d1sgnxc0 85 7 for for IN cord-269150-d1sgnxc0 85 8 further further JJ cord-269150-d1sgnxc0 85 9 studies study NNS cord-269150-d1sgnxc0 85 10 . . . cord-269150-d1sgnxc0 86 1 HAX1 HAX1 NNP cord-269150-d1sgnxc0 86 2 was be VBD cord-269150-d1sgnxc0 86 3 reported report VBN cord-269150-d1sgnxc0 86 4 to to TO cord-269150-d1sgnxc0 86 5 function function VB cord-269150-d1sgnxc0 86 6 as as IN cord-269150-d1sgnxc0 86 7 an an DT cord-269150-d1sgnxc0 86 8 anti anti JJ cord-269150-d1sgnxc0 86 9 - - JJ cord-269150-d1sgnxc0 86 10 apoptotic apoptotic JJ cord-269150-d1sgnxc0 86 11 protein protein NN cord-269150-d1sgnxc0 86 12 , , , cord-269150-d1sgnxc0 86 13 which which WDT cord-269150-d1sgnxc0 86 14 was be VBD cord-269150-d1sgnxc0 86 15 not not RB cord-269150-d1sgnxc0 86 16 the the DT cord-269150-d1sgnxc0 86 17 focus focus NN cord-269150-d1sgnxc0 86 18 of of IN cord-269150-d1sgnxc0 86 19 our -PRON- PRP$ cord-269150-d1sgnxc0 86 20 screen screen NN cord-269150-d1sgnxc0 86 21 and and CC cord-269150-d1sgnxc0 86 22 was be VBD cord-269150-d1sgnxc0 86 23 therefore therefore RB cord-269150-d1sgnxc0 86 24 not not RB cord-269150-d1sgnxc0 86 25 chosen choose VBN cord-269150-d1sgnxc0 86 26 for for IN cord-269150-d1sgnxc0 86 27 further further JJ cord-269150-d1sgnxc0 86 28 studies study NNS cord-269150-d1sgnxc0 86 29 as as RB cord-269150-d1sgnxc0 86 30 well well RB cord-269150-d1sgnxc0 86 31 . . . cord-269150-d1sgnxc0 87 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 87 2 was be VBD cord-269150-d1sgnxc0 87 3 reported report VBN cord-269150-d1sgnxc0 87 4 as as IN cord-269150-d1sgnxc0 87 5 a a DT cord-269150-d1sgnxc0 87 6 member member NN cord-269150-d1sgnxc0 87 7 of of IN cord-269150-d1sgnxc0 87 8 the the DT cord-269150-d1sgnxc0 87 9 alternative alternative JJ cord-269150-d1sgnxc0 87 10 splicing splicing NN cord-269150-d1sgnxc0 87 11 pathway pathway NN cord-269150-d1sgnxc0 87 12 , , , cord-269150-d1sgnxc0 87 13 which which WDT cord-269150-d1sgnxc0 87 14 implied imply VBD cord-269150-d1sgnxc0 87 15 a a DT cord-269150-d1sgnxc0 87 16 possible possible JJ cord-269150-d1sgnxc0 87 17 role role NN cord-269150-d1sgnxc0 87 18 in in IN cord-269150-d1sgnxc0 87 19 facilitating facilitate VBG cord-269150-d1sgnxc0 87 20 distal distal JJ cord-269150-d1sgnxc0 87 21 RNA RNA NNP cord-269150-d1sgnxc0 87 22 sequences sequence NNS cord-269150-d1sgnxc0 87 23 to to TO cord-269150-d1sgnxc0 87 24 be be VB cord-269150-d1sgnxc0 87 25 brought bring VBN cord-269150-d1sgnxc0 87 26 into into IN cord-269150-d1sgnxc0 87 27 close close JJ cord-269150-d1sgnxc0 87 28 proximity proximity NN cord-269150-d1sgnxc0 87 29 , , , cord-269150-d1sgnxc0 87 30 corresponded correspond VBD cord-269150-d1sgnxc0 87 31 well well RB cord-269150-d1sgnxc0 87 32 with with IN cord-269150-d1sgnxc0 87 33 current current JJ cord-269150-d1sgnxc0 87 34 evidence evidence NN cord-269150-d1sgnxc0 87 35 on on IN cord-269150-d1sgnxc0 87 36 the the DT cord-269150-d1sgnxc0 87 37 mechanism mechanism NN cord-269150-d1sgnxc0 87 38 of of IN cord-269150-d1sgnxc0 87 39 discontinuous discontinuous JJ cord-269150-d1sgnxc0 87 40 transcription transcription NN cord-269150-d1sgnxc0 87 41 . . . cord-269150-d1sgnxc0 88 1 Therefore therefore RB cord-269150-d1sgnxc0 88 2 , , , cord-269150-d1sgnxc0 88 3 it -PRON- PRP cord-269150-d1sgnxc0 88 4 was be VBD cord-269150-d1sgnxc0 88 5 chosen choose VBN cord-269150-d1sgnxc0 88 6 as as IN cord-269150-d1sgnxc0 88 7 the the DT cord-269150-d1sgnxc0 88 8 sole sole JJ cord-269150-d1sgnxc0 88 9 target target NN cord-269150-d1sgnxc0 88 10 for for IN cord-269150-d1sgnxc0 88 11 this this DT cord-269150-d1sgnxc0 88 12 study study NN cord-269150-d1sgnxc0 88 13 . . . cord-269150-d1sgnxc0 89 1 The the DT cord-269150-d1sgnxc0 89 2 5 5 CD cord-269150-d1sgnxc0 89 3 0 0 CD cord-269150-d1sgnxc0 89 4 -UTR -utr NN cord-269150-d1sgnxc0 89 5 of of IN cord-269150-d1sgnxc0 89 6 coronavirus coronavirus NN cord-269150-d1sgnxc0 89 7 genomic genomic JJ cord-269150-d1sgnxc0 89 8 RNA RNA NNP cord-269150-d1sgnxc0 89 9 interacts interact VBZ cord-269150-d1sgnxc0 89 10 specifically specifically RB cord-269150-d1sgnxc0 89 11 with with IN cord-269150-d1sgnxc0 89 12 MADP1 MADP1 NNP cord-269150-d1sgnxc0 90 1 The the DT cord-269150-d1sgnxc0 90 2 interaction interaction NN cord-269150-d1sgnxc0 90 3 between between IN cord-269150-d1sgnxc0 90 4 MADP1 MADP1 NNP cord-269150-d1sgnxc0 90 5 and and CC cord-269150-d1sgnxc0 90 6 the the DT cord-269150-d1sgnxc0 90 7 coronavirus coronavirus NN cord-269150-d1sgnxc0 90 8 5 5 CD cord-269150-d1sgnxc0 90 9 0 0 CD cord-269150-d1sgnxc0 90 10 -UTR -utr NN cord-269150-d1sgnxc0 90 11 was be VBD cord-269150-d1sgnxc0 90 12 confirmed confirm VBN cord-269150-d1sgnxc0 90 13 by by IN cord-269150-d1sgnxc0 90 14 using use VBG cord-269150-d1sgnxc0 90 15 over over RB cord-269150-d1sgnxc0 90 16 - - HYPH cord-269150-d1sgnxc0 90 17 expressed express VBN cord-269150-d1sgnxc0 90 18 Flag Flag NNP cord-269150-d1sgnxc0 90 19 - - HYPH cord-269150-d1sgnxc0 90 20 tagged tagged NNP cord-269150-d1sgnxc0 90 21 MADP1 MADP1 NNP cord-269150-d1sgnxc0 90 22 in in IN cord-269150-d1sgnxc0 90 23 a a DT cord-269150-d1sgnxc0 90 24 biotin biotin NN cord-269150-d1sgnxc0 90 25 - - HYPH cord-269150-d1sgnxc0 90 26 RNA rna NN cord-269150-d1sgnxc0 90 27 pull pull VB cord-269150-d1sgnxc0 90 28 - - HYPH cord-269150-d1sgnxc0 90 29 down down RP cord-269150-d1sgnxc0 90 30 assay assay NN cord-269150-d1sgnxc0 90 31 . . . cord-269150-d1sgnxc0 91 1 Based base VBN cord-269150-d1sgnxc0 91 2 on on IN cord-269150-d1sgnxc0 91 3 the the DT cord-269150-d1sgnxc0 91 4 efficiency efficiency NN cord-269150-d1sgnxc0 91 5 of of IN cord-269150-d1sgnxc0 91 6 Flag Flag NNP cord-269150-d1sgnxc0 91 7 - - HYPH cord-269150-d1sgnxc0 91 8 tagged tagged NNP cord-269150-d1sgnxc0 91 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 91 10 co co NN cord-269150-d1sgnxc0 91 11 - - NN cord-269150-d1sgnxc0 91 12 purification purification NN cord-269150-d1sgnxc0 91 13 with with IN cord-269150-d1sgnxc0 91 14 the the DT cord-269150-d1sgnxc0 91 15 biotinylated biotinylated JJ cord-269150-d1sgnxc0 91 16 RNA RNA NNP cord-269150-d1sgnxc0 91 17 , , , cord-269150-d1sgnxc0 91 18 the the DT cord-269150-d1sgnxc0 91 19 full full JJ cord-269150-d1sgnxc0 91 20 - - HYPH cord-269150-d1sgnxc0 91 21 length length NN cord-269150-d1sgnxc0 91 22 , , , cord-269150-d1sgnxc0 91 23 mammalian mammalian NN cord-269150-d1sgnxc0 91 24 - - HYPH cord-269150-d1sgnxc0 91 25 expressed express VBN cord-269150-d1sgnxc0 91 26 MADP1 MADP1 NNP cord-269150-d1sgnxc0 91 27 was be VBD cord-269150-d1sgnxc0 91 28 found find VBN cord-269150-d1sgnxc0 91 29 to to TO cord-269150-d1sgnxc0 91 30 be be VB cord-269150-d1sgnxc0 91 31 able able JJ cord-269150-d1sgnxc0 91 32 to to TO cord-269150-d1sgnxc0 91 33 interact interact VB cord-269150-d1sgnxc0 91 34 with with IN cord-269150-d1sgnxc0 91 35 the the DT cord-269150-d1sgnxc0 91 36 5 5 CD cord-269150-d1sgnxc0 91 37 0 0 CD cord-269150-d1sgnxc0 91 38 -UTR -utr NN cord-269150-d1sgnxc0 91 39 of of IN cord-269150-d1sgnxc0 91 40 IBV IBV NNP cord-269150-d1sgnxc0 91 41 and and CC cord-269150-d1sgnxc0 91 42 SARS SARS NNP cord-269150-d1sgnxc0 91 43 - - HYPH cord-269150-d1sgnxc0 91 44 CoV CoV NNP cord-269150-d1sgnxc0 91 45 RNA RNA NNP cord-269150-d1sgnxc0 91 46 ( ( -LRB- cord-269150-d1sgnxc0 91 47 Figure Figure NNP cord-269150-d1sgnxc0 91 48 1A 1a NN cord-269150-d1sgnxc0 91 49 ) ) -RRB- cord-269150-d1sgnxc0 91 50 . . . cord-269150-d1sgnxc0 92 1 Over over RB cord-269150-d1sgnxc0 92 2 - - HYPH cord-269150-d1sgnxc0 92 3 expressed express VBN cord-269150-d1sgnxc0 92 4 Flag Flag NNP cord-269150-d1sgnxc0 92 5 - - HYPH cord-269150-d1sgnxc0 92 6 tagged tag VBN cord-269150-d1sgnxc0 92 7 protein protein NN cord-269150-d1sgnxc0 92 8 was be VBD cord-269150-d1sgnxc0 92 9 used use VBN cord-269150-d1sgnxc0 92 10 to to TO cord-269150-d1sgnxc0 92 11 facilitate facilitate VB cord-269150-d1sgnxc0 92 12 detection detection NN cord-269150-d1sgnxc0 92 13 , , , cord-269150-d1sgnxc0 92 14 as as IN cord-269150-d1sgnxc0 92 15 there there EX cord-269150-d1sgnxc0 92 16 was be VBD cord-269150-d1sgnxc0 92 17 no no DT cord-269150-d1sgnxc0 92 18 commercially commercially RB cord-269150-d1sgnxc0 92 19 available available JJ cord-269150-d1sgnxc0 92 20 antibody antibody NN cord-269150-d1sgnxc0 92 21 to to IN cord-269150-d1sgnxc0 92 22 the the DT cord-269150-d1sgnxc0 92 23 protein protein NN cord-269150-d1sgnxc0 92 24 at at IN cord-269150-d1sgnxc0 92 25 that that DT cord-269150-d1sgnxc0 92 26 time time NN cord-269150-d1sgnxc0 92 27 . . . cord-269150-d1sgnxc0 93 1 It -PRON- PRP cord-269150-d1sgnxc0 93 2 was be VBD cord-269150-d1sgnxc0 93 3 noted note VBN cord-269150-d1sgnxc0 93 4 that that IN cord-269150-d1sgnxc0 93 5 IBV IBV NNP cord-269150-d1sgnxc0 93 6 5 5 CD cord-269150-d1sgnxc0 93 7 0 0 CD cord-269150-d1sgnxc0 93 8 -UTR -utr NN cord-269150-d1sgnxc0 93 9 showed show VBD cord-269150-d1sgnxc0 93 10 higher high JJR cord-269150-d1sgnxc0 93 11 binding bind VBG cord-269150-d1sgnxc0 93 12 affinity affinity NN cord-269150-d1sgnxc0 93 13 to to IN cord-269150-d1sgnxc0 93 14 the the DT cord-269150-d1sgnxc0 93 15 Flag Flag NNP cord-269150-d1sgnxc0 93 16 - - HYPH cord-269150-d1sgnxc0 93 17 tagged tagged NNP cord-269150-d1sgnxc0 93 18 MADP1 MADP1 NNP cord-269150-d1sgnxc0 93 19 than than IN cord-269150-d1sgnxc0 93 20 did do VBD cord-269150-d1sgnxc0 93 21 SARS SARS NNP cord-269150-d1sgnxc0 93 22 - - HYPH cord-269150-d1sgnxc0 93 23 CoV CoV NNP cord-269150-d1sgnxc0 93 24 5 5 CD cord-269150-d1sgnxc0 93 25 0 0 CD cord-269150-d1sgnxc0 93 26 -UTR -UTR . cord-269150-d1sgnxc0 94 1 ( ( -LRB- cord-269150-d1sgnxc0 94 2 Figure figure NN cord-269150-d1sgnxc0 94 3 1A 1a NN cord-269150-d1sgnxc0 94 4 ) ) -RRB- cord-269150-d1sgnxc0 94 5 . . . cord-269150-d1sgnxc0 95 1 The the DT cord-269150-d1sgnxc0 95 2 specific specific JJ cord-269150-d1sgnxc0 95 3 interaction interaction NN cord-269150-d1sgnxc0 95 4 between between IN cord-269150-d1sgnxc0 95 5 IBV IBV NNP cord-269150-d1sgnxc0 95 6 5 5 CD cord-269150-d1sgnxc0 95 7 0 0 CD cord-269150-d1sgnxc0 95 8 -UTR -UTR . cord-269150-d1sgnxc0 96 1 and and CC cord-269150-d1sgnxc0 96 2 MADP1 MADP1 NNP cord-269150-d1sgnxc0 96 3 and and CC cord-269150-d1sgnxc0 96 4 its -PRON- PRP$ cord-269150-d1sgnxc0 96 5 functional functional JJ cord-269150-d1sgnxc0 96 6 implication implication NN cord-269150-d1sgnxc0 96 7 in in IN cord-269150-d1sgnxc0 96 8 coronavirus coronavirus NN cord-269150-d1sgnxc0 96 9 replication replication NN cord-269150-d1sgnxc0 96 10 were be VBD cord-269150-d1sgnxc0 96 11 therefore therefore RB cord-269150-d1sgnxc0 96 12 chosen choose VBN cord-269150-d1sgnxc0 96 13 for for IN cord-269150-d1sgnxc0 96 14 subsequent subsequent JJ cord-269150-d1sgnxc0 96 15 characterization characterization NN cord-269150-d1sgnxc0 96 16 . . . cord-269150-d1sgnxc0 97 1 To to TO cord-269150-d1sgnxc0 97 2 check check VB cord-269150-d1sgnxc0 97 3 the the DT cord-269150-d1sgnxc0 97 4 specificity specificity NN cord-269150-d1sgnxc0 97 5 of of IN cord-269150-d1sgnxc0 97 6 the the DT cord-269150-d1sgnxc0 97 7 interaction interaction NN cord-269150-d1sgnxc0 97 8 , , , cord-269150-d1sgnxc0 97 9 a a DT cord-269150-d1sgnxc0 97 10 competition competition NN cord-269150-d1sgnxc0 97 11 assay assay NN cord-269150-d1sgnxc0 97 12 based base VBN cord-269150-d1sgnxc0 97 13 on on IN cord-269150-d1sgnxc0 97 14 the the DT cord-269150-d1sgnxc0 97 15 biotin biotin NNP cord-269150-d1sgnxc0 97 16 - - HYPH cord-269150-d1sgnxc0 97 17 RNA rna NN cord-269150-d1sgnxc0 97 18 pull pull VB cord-269150-d1sgnxc0 97 19 - - HYPH cord-269150-d1sgnxc0 97 20 down down RP cord-269150-d1sgnxc0 97 21 assay assay NN cord-269150-d1sgnxc0 97 22 was be VBD cord-269150-d1sgnxc0 97 23 performed perform VBN cord-269150-d1sgnxc0 97 24 . . . cord-269150-d1sgnxc0 98 1 Total total JJ cord-269150-d1sgnxc0 98 2 cell cell NN cord-269150-d1sgnxc0 98 3 lysates lysate NNS cord-269150-d1sgnxc0 98 4 containing contain VBG cord-269150-d1sgnxc0 98 5 Flag Flag NNP cord-269150-d1sgnxc0 98 6 - - HYPH cord-269150-d1sgnxc0 98 7 tagged tagged NNP cord-269150-d1sgnxc0 98 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 98 9 were be VBD cord-269150-d1sgnxc0 98 10 incubated incubate VBN cord-269150-d1sgnxc0 98 11 with with IN cord-269150-d1sgnxc0 98 12 0.1 0.1 CD cord-269150-d1sgnxc0 98 13 mM mm CD cord-269150-d1sgnxc0 98 14 biotinylated biotinylate VBN cord-269150-d1sgnxc0 98 15 IBV IBV NNP cord-269150-d1sgnxc0 98 16 5 5 CD cord-269150-d1sgnxc0 98 17 0 0 CD cord-269150-d1sgnxc0 98 18 -UTR -utr NN cord-269150-d1sgnxc0 98 19 in in IN cord-269150-d1sgnxc0 98 20 the the DT cord-269150-d1sgnxc0 98 21 presence presence NN cord-269150-d1sgnxc0 98 22 of of IN cord-269150-d1sgnxc0 98 23 increasing increase VBG cord-269150-d1sgnxc0 98 24 concentrations concentration NNS cord-269150-d1sgnxc0 98 25 of of IN cord-269150-d1sgnxc0 98 26 either either DT cord-269150-d1sgnxc0 98 27 unlabeled unlabeled JJ cord-269150-d1sgnxc0 98 28 specific specific JJ cord-269150-d1sgnxc0 98 29 competitor competitor NN cord-269150-d1sgnxc0 98 30 RNA RNA NNP cord-269150-d1sgnxc0 98 31 probe probe NN cord-269150-d1sgnxc0 98 32 ( ( -LRB- cord-269150-d1sgnxc0 98 33 IBV IBV NNP cord-269150-d1sgnxc0 98 34 5 5 CD cord-269150-d1sgnxc0 98 35 0 0 CD cord-269150-d1sgnxc0 98 36 -UTR -utr NN cord-269150-d1sgnxc0 98 37 ) ) -RRB- cord-269150-d1sgnxc0 98 38 or or CC cord-269150-d1sgnxc0 98 39 unlabeled unlabeled JJ cord-269150-d1sgnxc0 98 40 non non JJ cord-269150-d1sgnxc0 98 41 - - JJ cord-269150-d1sgnxc0 98 42 specific specific JJ cord-269150-d1sgnxc0 98 43 probe probe NN cord-269150-d1sgnxc0 98 44 ( ( -LRB- cord-269150-d1sgnxc0 98 45 EGFP EGFP NNP cord-269150-d1sgnxc0 98 46 RNA RNA NNP cord-269150-d1sgnxc0 98 47 ) ) -RRB- cord-269150-d1sgnxc0 98 48 composed compose VBN cord-269150-d1sgnxc0 98 49 of of IN cord-269150-d1sgnxc0 98 50 nucleotides nucleotide NNS cord-269150-d1sgnxc0 98 51 1 1 CD cord-269150-d1sgnxc0 98 52 - - SYM cord-269150-d1sgnxc0 98 53 528 528 CD cord-269150-d1sgnxc0 98 54 of of IN cord-269150-d1sgnxc0 98 55 the the DT cord-269150-d1sgnxc0 98 56 EGFP EGFP NNP cord-269150-d1sgnxc0 98 57 coding coding NN cord-269150-d1sgnxc0 98 58 sequence sequence NN cord-269150-d1sgnxc0 98 59 , , , cord-269150-d1sgnxc0 98 60 from from IN cord-269150-d1sgnxc0 98 61 0 0 CD cord-269150-d1sgnxc0 98 62 to to IN cord-269150-d1sgnxc0 98 63 0.2 0.2 CD cord-269150-d1sgnxc0 98 64 mM. mm. JJ cord-269150-d1sgnxc0 98 65 Western western JJ cord-269150-d1sgnxc0 98 66 blot blot NN cord-269150-d1sgnxc0 98 67 analysis analysis NN cord-269150-d1sgnxc0 98 68 of of IN cord-269150-d1sgnxc0 98 69 the the DT cord-269150-d1sgnxc0 98 70 co co NN cord-269150-d1sgnxc0 98 71 - - JJ cord-269150-d1sgnxc0 98 72 purified purify VBN cord-269150-d1sgnxc0 98 73 Flag Flag NNP cord-269150-d1sgnxc0 98 74 - - HYPH cord-269150-d1sgnxc0 98 75 tagged tag VBN cord-269150-d1sgnxc0 98 76 protein protein NN cord-269150-d1sgnxc0 98 77 showed show VBD cord-269150-d1sgnxc0 98 78 that that IN cord-269150-d1sgnxc0 98 79 increasing increase VBG cord-269150-d1sgnxc0 98 80 concentrations concentration NNS cord-269150-d1sgnxc0 98 81 of of IN cord-269150-d1sgnxc0 98 82 unlabeled unlabeled JJ cord-269150-d1sgnxc0 98 83 specific specific JJ cord-269150-d1sgnxc0 98 84 competitor competitor NN cord-269150-d1sgnxc0 98 85 RNA RNA NNP cord-269150-d1sgnxc0 98 86 led lead VBD cord-269150-d1sgnxc0 98 87 to to IN cord-269150-d1sgnxc0 98 88 the the DT cord-269150-d1sgnxc0 98 89 decreasing decrease VBG cord-269150-d1sgnxc0 98 90 co co NN cord-269150-d1sgnxc0 98 91 - - NN cord-269150-d1sgnxc0 98 92 purification purification NN cord-269150-d1sgnxc0 98 93 of of IN cord-269150-d1sgnxc0 98 94 MADP1 MADP1 NNP cord-269150-d1sgnxc0 98 95 with with IN cord-269150-d1sgnxc0 98 96 the the DT cord-269150-d1sgnxc0 98 97 biotinylated biotinylate VBN cord-269150-d1sgnxc0 98 98 RNA RNA NNP cord-269150-d1sgnxc0 98 99 probe probe NN cord-269150-d1sgnxc0 98 100 ( ( -LRB- cord-269150-d1sgnxc0 98 101 Figure figure NN cord-269150-d1sgnxc0 98 102 1B 1b CD cord-269150-d1sgnxc0 98 103 ) ) -RRB- cord-269150-d1sgnxc0 98 104 . . . cord-269150-d1sgnxc0 99 1 However however RB cord-269150-d1sgnxc0 99 2 , , , cord-269150-d1sgnxc0 99 3 increasing increase VBG cord-269150-d1sgnxc0 99 4 concentrations concentration NNS cord-269150-d1sgnxc0 99 5 of of IN cord-269150-d1sgnxc0 99 6 unlabeled unlabeled JJ cord-269150-d1sgnxc0 99 7 non non JJ cord-269150-d1sgnxc0 99 8 - - JJ cord-269150-d1sgnxc0 99 9 specific specific JJ cord-269150-d1sgnxc0 99 10 competitor competitor NN cord-269150-d1sgnxc0 99 11 RNA RNA NNP cord-269150-d1sgnxc0 99 12 did do VBD cord-269150-d1sgnxc0 99 13 not not RB cord-269150-d1sgnxc0 99 14 result result VB cord-269150-d1sgnxc0 99 15 in in IN cord-269150-d1sgnxc0 99 16 detectable detectable JJ cord-269150-d1sgnxc0 99 17 change change NN cord-269150-d1sgnxc0 99 18 to to IN cord-269150-d1sgnxc0 99 19 the the DT cord-269150-d1sgnxc0 99 20 efficiency efficiency NN cord-269150-d1sgnxc0 99 21 of of IN cord-269150-d1sgnxc0 99 22 MADP1 MADP1 NNP cord-269150-d1sgnxc0 99 23 co co NN cord-269150-d1sgnxc0 99 24 - - NN cord-269150-d1sgnxc0 99 25 purification purification JJ cord-269150-d1sgnxc0 99 26 ( ( -LRB- cord-269150-d1sgnxc0 99 27 Figure figure NN cord-269150-d1sgnxc0 99 28 1B 1b CD cord-269150-d1sgnxc0 99 29 ) ) -RRB- cord-269150-d1sgnxc0 99 30 . . . cord-269150-d1sgnxc0 100 1 Simultaneously simultaneously RB cord-269150-d1sgnxc0 100 2 , , , cord-269150-d1sgnxc0 100 3 a a DT cord-269150-d1sgnxc0 100 4 protein protein NN cord-269150-d1sgnxc0 100 5 exhibiting exhibit VBG cord-269150-d1sgnxc0 100 6 a a DT cord-269150-d1sgnxc0 100 7 non non JJ cord-269150-d1sgnxc0 100 8 - - JJ cord-269150-d1sgnxc0 100 9 specific specific JJ cord-269150-d1sgnxc0 100 10 RNA rna NN cord-269150-d1sgnxc0 100 11 - - HYPH cord-269150-d1sgnxc0 100 12 binding bind VBG cord-269150-d1sgnxc0 100 13 activity activity NN cord-269150-d1sgnxc0 100 14 , , , cord-269150-d1sgnxc0 100 15 the the DT cord-269150-d1sgnxc0 100 16 Flag Flag NNP cord-269150-d1sgnxc0 100 17 - - HYPH cord-269150-d1sgnxc0 100 18 tagged tagged NNP cord-269150-d1sgnxc0 100 19 IBV IBV NNP cord-269150-d1sgnxc0 100 20 - - HYPH cord-269150-d1sgnxc0 100 21 N N NNP cord-269150-d1sgnxc0 100 22 , , , cord-269150-d1sgnxc0 100 23 was be VBD cord-269150-d1sgnxc0 100 24 used use VBN cord-269150-d1sgnxc0 100 25 as as IN cord-269150-d1sgnxc0 100 26 a a DT cord-269150-d1sgnxc0 100 27 control control NN cord-269150-d1sgnxc0 100 28 . . . cord-269150-d1sgnxc0 101 1 Total total JJ cord-269150-d1sgnxc0 101 2 cell cell NN cord-269150-d1sgnxc0 101 3 lysates lysate NNS cord-269150-d1sgnxc0 101 4 containing contain VBG cord-269150-d1sgnxc0 101 5 the the DT cord-269150-d1sgnxc0 101 6 Flag Flag NNP cord-269150-d1sgnxc0 101 7 - - HYPH cord-269150-d1sgnxc0 101 8 tagged tagged NNP cord-269150-d1sgnxc0 101 9 IBV IBV NNP cord-269150-d1sgnxc0 101 10 N N NNP cord-269150-d1sgnxc0 101 11 protein protein NN cord-269150-d1sgnxc0 101 12 was be VBD cord-269150-d1sgnxc0 101 13 incubated incubate VBN cord-269150-d1sgnxc0 101 14 with with IN cord-269150-d1sgnxc0 101 15 0.1 0.1 CD cord-269150-d1sgnxc0 101 16 mM mm CD cord-269150-d1sgnxc0 101 17 of of IN cord-269150-d1sgnxc0 101 18 the the DT cord-269150-d1sgnxc0 101 19 biotinylated biotinylated JJ cord-269150-d1sgnxc0 101 20 IBV IBV NNP cord-269150-d1sgnxc0 101 21 3 3 CD cord-269150-d1sgnxc0 101 22 0 0 CD cord-269150-d1sgnxc0 101 23 -UTR -utr NN cord-269150-d1sgnxc0 101 24 , , , cord-269150-d1sgnxc0 101 25 in in IN cord-269150-d1sgnxc0 101 26 the the DT cord-269150-d1sgnxc0 101 27 presence presence NN cord-269150-d1sgnxc0 101 28 of of IN cord-269150-d1sgnxc0 101 29 increasing increase VBG cord-269150-d1sgnxc0 101 30 concentrations concentration NNS cord-269150-d1sgnxc0 101 31 of of IN cord-269150-d1sgnxc0 101 32 either either CC cord-269150-d1sgnxc0 101 33 the the DT cord-269150-d1sgnxc0 101 34 unlabeled unlabeled JJ cord-269150-d1sgnxc0 101 35 specific specific JJ cord-269150-d1sgnxc0 101 36 probe probe NN cord-269150-d1sgnxc0 101 37 or or CC cord-269150-d1sgnxc0 101 38 an an DT cord-269150-d1sgnxc0 101 39 unlabeled unlabeled JJ cord-269150-d1sgnxc0 101 40 non non JJ cord-269150-d1sgnxc0 101 41 - - JJ cord-269150-d1sgnxc0 101 42 specific specific JJ cord-269150-d1sgnxc0 101 43 probe probe NN cord-269150-d1sgnxc0 101 44 , , , cord-269150-d1sgnxc0 101 45 EGFP EGFP NNP cord-269150-d1sgnxc0 101 46 RNA RNA NNP cord-269150-d1sgnxc0 101 47 , , , cord-269150-d1sgnxc0 101 48 of of IN cord-269150-d1sgnxc0 101 49 an an DT cord-269150-d1sgnxc0 101 50 equal equal JJ cord-269150-d1sgnxc0 101 51 length length NN cord-269150-d1sgnxc0 101 52 . . . cord-269150-d1sgnxc0 102 1 Western western JJ cord-269150-d1sgnxc0 102 2 blot blot NN cord-269150-d1sgnxc0 102 3 detection detection NN cord-269150-d1sgnxc0 102 4 of of IN cord-269150-d1sgnxc0 102 5 the the DT cord-269150-d1sgnxc0 102 6 co co NN cord-269150-d1sgnxc0 102 7 - - JJ cord-269150-d1sgnxc0 102 8 purified purify VBN cord-269150-d1sgnxc0 102 9 Flag Flag NNP cord-269150-d1sgnxc0 102 10 - - HYPH cord-269150-d1sgnxc0 102 11 tagged tagged NNP cord-269150-d1sgnxc0 102 12 N N NNP cord-269150-d1sgnxc0 102 13 protein protein NN cord-269150-d1sgnxc0 102 14 revealed reveal VBD cord-269150-d1sgnxc0 102 15 that that IN cord-269150-d1sgnxc0 102 16 increasing increase VBG cord-269150-d1sgnxc0 102 17 concentrations concentration NNS cord-269150-d1sgnxc0 102 18 of of IN cord-269150-d1sgnxc0 102 19 both both DT cord-269150-d1sgnxc0 102 20 unlabeled unlabeled JJ cord-269150-d1sgnxc0 102 21 RNA RNA NNP cord-269150-d1sgnxc0 102 22 probes probe NNS cord-269150-d1sgnxc0 102 23 increasingly increasingly RB cord-269150-d1sgnxc0 102 24 reduced reduce VBD cord-269150-d1sgnxc0 102 25 the the DT cord-269150-d1sgnxc0 102 26 efficiency efficiency NN cord-269150-d1sgnxc0 102 27 of of IN cord-269150-d1sgnxc0 102 28 N N NNP cord-269150-d1sgnxc0 102 29 protein protein NN cord-269150-d1sgnxc0 102 30 co co NN cord-269150-d1sgnxc0 102 31 - - NN cord-269150-d1sgnxc0 102 32 purification purification NN cord-269150-d1sgnxc0 102 33 with with IN cord-269150-d1sgnxc0 102 34 the the DT cord-269150-d1sgnxc0 102 35 biotinylated biotinylate VBN cord-269150-d1sgnxc0 102 36 RNA RNA NNP cord-269150-d1sgnxc0 102 37 probes probe NNS cord-269150-d1sgnxc0 102 38 ( ( -LRB- cord-269150-d1sgnxc0 102 39 Figure figure NN cord-269150-d1sgnxc0 102 40 1B 1b CD cord-269150-d1sgnxc0 102 41 ) ) -RRB- cord-269150-d1sgnxc0 102 42 . . . cord-269150-d1sgnxc0 103 1 These these DT cord-269150-d1sgnxc0 103 2 results result NNS cord-269150-d1sgnxc0 103 3 confirmed confirm VBD cord-269150-d1sgnxc0 103 4 that that IN cord-269150-d1sgnxc0 103 5 MADP1 MADP1 NNP cord-269150-d1sgnxc0 103 6 could could MD cord-269150-d1sgnxc0 103 7 interact interact VB cord-269150-d1sgnxc0 103 8 specifically specifically RB cord-269150-d1sgnxc0 103 9 with with IN cord-269150-d1sgnxc0 103 10 the the DT cord-269150-d1sgnxc0 103 11 5 5 CD cord-269150-d1sgnxc0 103 12 0 0 CD cord-269150-d1sgnxc0 103 13 -UTR -utr NN cord-269150-d1sgnxc0 103 14 of of IN cord-269150-d1sgnxc0 103 15 IBV IBV NNP cord-269150-d1sgnxc0 103 16 RNA RNA NNP cord-269150-d1sgnxc0 103 17 . . . cord-269150-d1sgnxc0 104 1 Over over RB cord-269150-d1sgnxc0 104 2 - - HYPH cord-269150-d1sgnxc0 104 3 expressed express VBN cord-269150-d1sgnxc0 104 4 Flag Flag NNP cord-269150-d1sgnxc0 104 5 - - HYPH cord-269150-d1sgnxc0 104 6 tagged tagged NNP cord-269150-d1sgnxc0 104 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 104 8 translocates translocate NNS cord-269150-d1sgnxc0 104 9 from from IN cord-269150-d1sgnxc0 104 10 the the DT cord-269150-d1sgnxc0 104 11 nucleus nucleus NN cord-269150-d1sgnxc0 104 12 to to IN cord-269150-d1sgnxc0 104 13 the the DT cord-269150-d1sgnxc0 104 14 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 105 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 105 2 was be VBD cord-269150-d1sgnxc0 105 3 identified identify VBN cord-269150-d1sgnxc0 105 4 as as IN cord-269150-d1sgnxc0 105 5 a a DT cord-269150-d1sgnxc0 105 6 component component NN cord-269150-d1sgnxc0 105 7 of of IN cord-269150-d1sgnxc0 105 8 the the DT cord-269150-d1sgnxc0 105 9 18 18 CD cord-269150-d1sgnxc0 105 10 S S NNP cord-269150-d1sgnxc0 105 11 U11/12 u11/12 JJ cord-269150-d1sgnxc0 105 12 snRNP snrnp NN cord-269150-d1sgnxc0 105 13 ( ( -LRB- cord-269150-d1sgnxc0 105 14 37 37 CD cord-269150-d1sgnxc0 105 15 ) ) -RRB- cord-269150-d1sgnxc0 105 16 and and CC cord-269150-d1sgnxc0 105 17 its -PRON- PRP$ cord-269150-d1sgnxc0 105 18 subcellular subcellular JJ cord-269150-d1sgnxc0 105 19 localization localization NN cord-269150-d1sgnxc0 105 20 was be VBD cord-269150-d1sgnxc0 105 21 determined determine VBN cord-269150-d1sgnxc0 105 22 to to TO cord-269150-d1sgnxc0 105 23 be be VB cord-269150-d1sgnxc0 105 24 in in IN cord-269150-d1sgnxc0 105 25 the the DT cord-269150-d1sgnxc0 105 26 nucleoplasm nucleoplasm NN cord-269150-d1sgnxc0 105 27 ( ( -LRB- cord-269150-d1sgnxc0 105 28 35 35 CD cord-269150-d1sgnxc0 105 29 ) ) -RRB- cord-269150-d1sgnxc0 105 30 . . . cord-269150-d1sgnxc0 106 1 IBV IBV NNP cord-269150-d1sgnxc0 106 2 replication replication NN cord-269150-d1sgnxc0 106 3 and and CC cord-269150-d1sgnxc0 106 4 transcription transcription NN cord-269150-d1sgnxc0 106 5 , , , cord-269150-d1sgnxc0 106 6 on on IN cord-269150-d1sgnxc0 106 7 the the DT cord-269150-d1sgnxc0 106 8 other other JJ cord-269150-d1sgnxc0 106 9 hand hand NN cord-269150-d1sgnxc0 106 10 , , , cord-269150-d1sgnxc0 106 11 take take VB cord-269150-d1sgnxc0 106 12 place place NN cord-269150-d1sgnxc0 106 13 in in IN cord-269150-d1sgnxc0 106 14 the the DT cord-269150-d1sgnxc0 106 15 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 106 16 of of IN cord-269150-d1sgnxc0 106 17 the the DT cord-269150-d1sgnxc0 106 18 infected infected JJ cord-269150-d1sgnxc0 106 19 cells cell NNS cord-269150-d1sgnxc0 106 20 . . . cord-269150-d1sgnxc0 107 1 Therefore therefore RB cord-269150-d1sgnxc0 107 2 , , , cord-269150-d1sgnxc0 107 3 to to TO cord-269150-d1sgnxc0 107 4 validate validate VB cord-269150-d1sgnxc0 107 5 the the DT cord-269150-d1sgnxc0 107 6 likelihood likelihood NN cord-269150-d1sgnxc0 107 7 of of IN cord-269150-d1sgnxc0 107 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 107 9 interacting interact VBG cord-269150-d1sgnxc0 107 10 with with IN cord-269150-d1sgnxc0 107 11 the the DT cord-269150-d1sgnxc0 107 12 viral viral JJ cord-269150-d1sgnxc0 107 13 5 5 CD cord-269150-d1sgnxc0 107 14 0 0 CD cord-269150-d1sgnxc0 107 15 -UTR -utr NN cord-269150-d1sgnxc0 107 16 , , , cord-269150-d1sgnxc0 107 17 immunofluorescence immunofluorescence NN cord-269150-d1sgnxc0 107 18 was be VBD cord-269150-d1sgnxc0 107 19 used use VBN cord-269150-d1sgnxc0 107 20 to to TO cord-269150-d1sgnxc0 107 21 track track VB cord-269150-d1sgnxc0 107 22 the the DT cord-269150-d1sgnxc0 107 23 subcellular subcellular JJ cord-269150-d1sgnxc0 107 24 localization localization NN cord-269150-d1sgnxc0 107 25 of of IN cord-269150-d1sgnxc0 107 26 both both CC cord-269150-d1sgnxc0 107 27 Flag Flag NNP cord-269150-d1sgnxc0 107 28 - - HYPH cord-269150-d1sgnxc0 107 29 tagged tagged NNP cord-269150-d1sgnxc0 107 30 MADP1 MADP1 NNP cord-269150-d1sgnxc0 107 31 and and CC cord-269150-d1sgnxc0 107 32 de de NNP cord-269150-d1sgnxc0 107 33 novo novo NNP cord-269150-d1sgnxc0 107 34 synthesized synthesize VBD cord-269150-d1sgnxc0 107 35 viral viral JJ cord-269150-d1sgnxc0 107 36 RNA RNA NNP cord-269150-d1sgnxc0 107 37 in in IN cord-269150-d1sgnxc0 107 38 both both DT cord-269150-d1sgnxc0 107 39 mock mock NN cord-269150-d1sgnxc0 107 40 - - HYPH cord-269150-d1sgnxc0 107 41 infected infected JJ cord-269150-d1sgnxc0 107 42 and and CC cord-269150-d1sgnxc0 107 43 IBV IBV NNP cord-269150-d1sgnxc0 107 44 - - HYPH cord-269150-d1sgnxc0 107 45 infected infect VBN cord-269150-d1sgnxc0 107 46 cells cell NNS cord-269150-d1sgnxc0 107 47 . . . cord-269150-d1sgnxc0 108 1 Flag flag NN cord-269150-d1sgnxc0 108 2 - - HYPH cord-269150-d1sgnxc0 108 3 tagged tagged NNP cord-269150-d1sgnxc0 108 4 MADP1 MADP1 NNP cord-269150-d1sgnxc0 108 5 was be VBD cord-269150-d1sgnxc0 108 6 overexpressed overexpresse VBN cord-269150-d1sgnxc0 108 7 in in IN cord-269150-d1sgnxc0 108 8 cultured cultured JJ cord-269150-d1sgnxc0 108 9 Vero Vero NNP cord-269150-d1sgnxc0 108 10 cells cell NNS cord-269150-d1sgnxc0 108 11 , , , cord-269150-d1sgnxc0 108 12 which which WDT cord-269150-d1sgnxc0 108 13 were be VBD cord-269150-d1sgnxc0 108 14 then then RB cord-269150-d1sgnxc0 108 15 infected infect VBN cord-269150-d1sgnxc0 108 16 with with IN cord-269150-d1sgnxc0 108 17 IBV IBV NNP cord-269150-d1sgnxc0 108 18 and and CC cord-269150-d1sgnxc0 108 19 treated treat VBN cord-269150-d1sgnxc0 108 20 with with IN cord-269150-d1sgnxc0 108 21 actinomycin actinomycin NNS cord-269150-d1sgnxc0 108 22 D D NNP cord-269150-d1sgnxc0 108 23 to to TO cord-269150-d1sgnxc0 108 24 inhibit inhibit VB cord-269150-d1sgnxc0 108 25 host host NN cord-269150-d1sgnxc0 108 26 transcription transcription NN cord-269150-d1sgnxc0 108 27 . . . cord-269150-d1sgnxc0 109 1 The the DT cord-269150-d1sgnxc0 109 2 newly newly RB cord-269150-d1sgnxc0 109 3 synthesized synthesize VBN cord-269150-d1sgnxc0 109 4 viral viral JJ cord-269150-d1sgnxc0 109 5 RNA RNA NNP cord-269150-d1sgnxc0 109 6 , , , cord-269150-d1sgnxc0 109 7 a a DT cord-269150-d1sgnxc0 109 8 marker marker NN cord-269150-d1sgnxc0 109 9 for for IN cord-269150-d1sgnxc0 109 10 the the DT cord-269150-d1sgnxc0 109 11 RTCs rtc NNS cord-269150-d1sgnxc0 109 12 , , , cord-269150-d1sgnxc0 109 13 was be VBD cord-269150-d1sgnxc0 109 14 labeled label VBN cord-269150-d1sgnxc0 109 15 with with IN cord-269150-d1sgnxc0 109 16 BrUTP BrUTP NNP cord-269150-d1sgnxc0 109 17 . . . cord-269150-d1sgnxc0 110 1 The the DT cord-269150-d1sgnxc0 110 2 cells cell NNS cord-269150-d1sgnxc0 110 3 were be VBD cord-269150-d1sgnxc0 110 4 fixed fix VBN cord-269150-d1sgnxc0 110 5 at at IN cord-269150-d1sgnxc0 110 6 10 10 CD cord-269150-d1sgnxc0 110 7 h h NN cord-269150-d1sgnxc0 110 8 post post NN cord-269150-d1sgnxc0 110 9 - - NN cord-269150-d1sgnxc0 110 10 infection infection NN cord-269150-d1sgnxc0 110 11 to to TO cord-269150-d1sgnxc0 110 12 allow allow VB cord-269150-d1sgnxc0 110 13 sufficient sufficient JJ cord-269150-d1sgnxc0 110 14 labeling labeling NN cord-269150-d1sgnxc0 110 15 of of IN cord-269150-d1sgnxc0 110 16 the the DT cord-269150-d1sgnxc0 110 17 newly newly RB cord-269150-d1sgnxc0 110 18 synthesized synthesize VBN cord-269150-d1sgnxc0 110 19 viral viral JJ cord-269150-d1sgnxc0 110 20 RNA RNA NNP cord-269150-d1sgnxc0 110 21 and and CC cord-269150-d1sgnxc0 110 22 to to TO cord-269150-d1sgnxc0 110 23 minimize minimize VB cord-269150-d1sgnxc0 110 24 the the DT cord-269150-d1sgnxc0 110 25 formation formation NN cord-269150-d1sgnxc0 110 26 of of IN cord-269150-d1sgnxc0 110 27 large large JJ cord-269150-d1sgnxc0 110 28 syncytial syncytial JJ cord-269150-d1sgnxc0 110 29 cells cell NNS cord-269150-d1sgnxc0 110 30 . . . cord-269150-d1sgnxc0 111 1 In in IN cord-269150-d1sgnxc0 111 2 uninfected uninfected JJ cord-269150-d1sgnxc0 111 3 cells cell NNS cord-269150-d1sgnxc0 111 4 , , , cord-269150-d1sgnxc0 111 5 Flag flag NN cord-269150-d1sgnxc0 111 6 - - HYPH cord-269150-d1sgnxc0 111 7 tagged tagged NNP cord-269150-d1sgnxc0 111 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 111 9 was be VBD cord-269150-d1sgnxc0 111 10 localized localize VBN cord-269150-d1sgnxc0 111 11 in in IN cord-269150-d1sgnxc0 111 12 the the DT cord-269150-d1sgnxc0 111 13 nucleus nucleus NN cord-269150-d1sgnxc0 111 14 exclusively exclusively RB cord-269150-d1sgnxc0 111 15 ( ( -LRB- cord-269150-d1sgnxc0 111 16 Figure figure NN cord-269150-d1sgnxc0 111 17 2 2 CD cord-269150-d1sgnxc0 111 18 ) ) -RRB- cord-269150-d1sgnxc0 111 19 . . . cord-269150-d1sgnxc0 112 1 Upon upon IN cord-269150-d1sgnxc0 112 2 infection infection NN cord-269150-d1sgnxc0 112 3 by by IN cord-269150-d1sgnxc0 112 4 IBV IBV NNP cord-269150-d1sgnxc0 112 5 , , , cord-269150-d1sgnxc0 112 6 Flag Flag NNP cord-269150-d1sgnxc0 112 7 - - HYPH cord-269150-d1sgnxc0 112 8 tagged tagged NNP cord-269150-d1sgnxc0 112 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 112 10 appeared appear VBD cord-269150-d1sgnxc0 112 11 to to TO cord-269150-d1sgnxc0 112 12 be be VB cord-269150-d1sgnxc0 112 13 present present JJ cord-269150-d1sgnxc0 112 14 in in IN cord-269150-d1sgnxc0 112 15 the the DT cord-269150-d1sgnxc0 112 16 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 112 17 as as RB cord-269150-d1sgnxc0 112 18 well well RB cord-269150-d1sgnxc0 112 19 ( ( -LRB- cord-269150-d1sgnxc0 112 20 Figure figure NN cord-269150-d1sgnxc0 112 21 2 2 CD cord-269150-d1sgnxc0 112 22 ) ) -RRB- cord-269150-d1sgnxc0 112 23 . . . cord-269150-d1sgnxc0 113 1 Interestingly interestingly RB cord-269150-d1sgnxc0 113 2 , , , cord-269150-d1sgnxc0 113 3 the the DT cord-269150-d1sgnxc0 113 4 cytoplasmic cytoplasmic JJ cord-269150-d1sgnxc0 113 5 localization localization NN cord-269150-d1sgnxc0 113 6 pattern pattern NN cord-269150-d1sgnxc0 113 7 of of IN cord-269150-d1sgnxc0 113 8 Flag Flag NNP cord-269150-d1sgnxc0 113 9 - - HYPH cord-269150-d1sgnxc0 113 10 tagged tagged NNP cord-269150-d1sgnxc0 113 11 MADP1 MADP1 NNP cord-269150-d1sgnxc0 113 12 appears appear VBZ cord-269150-d1sgnxc0 113 13 to to TO cord-269150-d1sgnxc0 113 14 be be VB cord-269150-d1sgnxc0 113 15 partially partially RB cord-269150-d1sgnxc0 113 16 overlapped overlap VBN cord-269150-d1sgnxc0 113 17 with with IN cord-269150-d1sgnxc0 113 18 that that DT cord-269150-d1sgnxc0 113 19 for for IN cord-269150-d1sgnxc0 113 20 the the DT cord-269150-d1sgnxc0 113 21 RTCs rtc NNS cord-269150-d1sgnxc0 113 22 , , , cord-269150-d1sgnxc0 113 23 although although IN cord-269150-d1sgnxc0 113 24 further further JJ cord-269150-d1sgnxc0 113 25 studies study NNS cord-269150-d1sgnxc0 113 26 would would MD cord-269150-d1sgnxc0 113 27 be be VB cord-269150-d1sgnxc0 113 28 required require VBN cord-269150-d1sgnxc0 113 29 to to TO cord-269150-d1sgnxc0 113 30 ascertain ascertain VB cord-269150-d1sgnxc0 113 31 if if IN cord-269150-d1sgnxc0 113 32 MADP1 MADP1 NNP cord-269150-d1sgnxc0 113 33 would would MD cord-269150-d1sgnxc0 113 34 be be VB cord-269150-d1sgnxc0 113 35 a a DT cord-269150-d1sgnxc0 113 36 part part NN cord-269150-d1sgnxc0 113 37 of of IN cord-269150-d1sgnxc0 113 38 the the DT cord-269150-d1sgnxc0 113 39 RTCs rtc NNS cord-269150-d1sgnxc0 113 40 ( ( -LRB- cord-269150-d1sgnxc0 113 41 Figure figure NN cord-269150-d1sgnxc0 113 42 2 2 CD cord-269150-d1sgnxc0 113 43 ) ) -RRB- cord-269150-d1sgnxc0 113 44 . . . cord-269150-d1sgnxc0 114 1 As as IN cord-269150-d1sgnxc0 114 2 a a DT cord-269150-d1sgnxc0 114 3 negative negative JJ cord-269150-d1sgnxc0 114 4 control control NN cord-269150-d1sgnxc0 114 5 for for IN cord-269150-d1sgnxc0 114 6 the the DT cord-269150-d1sgnxc0 114 7 over over RB cord-269150-d1sgnxc0 114 8 - - HYPH cord-269150-d1sgnxc0 114 9 expressed express VBN cord-269150-d1sgnxc0 114 10 protein protein NN cord-269150-d1sgnxc0 114 11 , , , cord-269150-d1sgnxc0 114 12 vector vector NN cord-269150-d1sgnxc0 114 13 transfected transfecte VBN cord-269150-d1sgnxc0 114 14 cells cell NNS cord-269150-d1sgnxc0 114 15 probed probe VBN cord-269150-d1sgnxc0 114 16 with with IN cord-269150-d1sgnxc0 114 17 Flag Flag NNP cord-269150-d1sgnxc0 114 18 antibody antibody NN cord-269150-d1sgnxc0 114 19 showed show VBD cord-269150-d1sgnxc0 114 20 negative negative JJ cord-269150-d1sgnxc0 114 21 staining staining NN cord-269150-d1sgnxc0 114 22 for for IN cord-269150-d1sgnxc0 114 23 the the DT cord-269150-d1sgnxc0 114 24 over over RB cord-269150-d1sgnxc0 114 25 - - HYPH cord-269150-d1sgnxc0 114 26 expressed express VBN cord-269150-d1sgnxc0 114 27 protein protein NN cord-269150-d1sgnxc0 114 28 ( ( -LRB- cord-269150-d1sgnxc0 114 29 Figure figure NN cord-269150-d1sgnxc0 114 30 2 2 CD cord-269150-d1sgnxc0 114 31 ) ) -RRB- cord-269150-d1sgnxc0 114 32 . . . cord-269150-d1sgnxc0 115 1 Similar similar JJ cord-269150-d1sgnxc0 115 2 colocalization colocalization NN cord-269150-d1sgnxc0 115 3 patterns pattern NNS cord-269150-d1sgnxc0 115 4 were be VBD cord-269150-d1sgnxc0 115 5 also also RB cord-269150-d1sgnxc0 115 6 observed observe VBN cord-269150-d1sgnxc0 115 7 in in IN cord-269150-d1sgnxc0 115 8 IBV IBV NNP cord-269150-d1sgnxc0 115 9 - - HYPH cord-269150-d1sgnxc0 115 10 infected infect VBN cord-269150-d1sgnxc0 115 11 H1299 H1299 NNP cord-269150-d1sgnxc0 115 12 cells cell NNS cord-269150-d1sgnxc0 115 13 ( ( -LRB- cord-269150-d1sgnxc0 115 14 Figure figure NN cord-269150-d1sgnxc0 115 15 2 2 CD cord-269150-d1sgnxc0 115 16 ) ) -RRB- cord-269150-d1sgnxc0 115 17 . . . cord-269150-d1sgnxc0 115 18 _SP cord-269150-d1sgnxc0 116 1 To to TO cord-269150-d1sgnxc0 116 2 define define VB cord-269150-d1sgnxc0 116 3 the the DT cord-269150-d1sgnxc0 116 4 segment segment NN cord-269150-d1sgnxc0 116 5 and and CC cord-269150-d1sgnxc0 116 6 structural structural JJ cord-269150-d1sgnxc0 116 7 elements element NNS cord-269150-d1sgnxc0 116 8 of of IN cord-269150-d1sgnxc0 116 9 IBV IBV NNP cord-269150-d1sgnxc0 116 10 5 5 CD cord-269150-d1sgnxc0 116 11 0 0 CD cord-269150-d1sgnxc0 116 12 -UTR -utr NN cord-269150-d1sgnxc0 116 13 required require VBN cord-269150-d1sgnxc0 116 14 for for IN cord-269150-d1sgnxc0 116 15 its -PRON- PRP$ cord-269150-d1sgnxc0 116 16 interaction interaction NN cord-269150-d1sgnxc0 116 17 with with IN cord-269150-d1sgnxc0 116 18 MADP1 MADP1 NNP cord-269150-d1sgnxc0 116 19 , , , cord-269150-d1sgnxc0 116 20 four four CD cord-269150-d1sgnxc0 116 21 truncated truncated JJ cord-269150-d1sgnxc0 116 22 mutant mutant NN cord-269150-d1sgnxc0 116 23 RNA rna NN cord-269150-d1sgnxc0 116 24 fragments fragment NNS cord-269150-d1sgnxc0 116 25 were be VBD cord-269150-d1sgnxc0 116 26 synthesized synthesize VBN cord-269150-d1sgnxc0 116 27 , , , cord-269150-d1sgnxc0 116 28 as as IN cord-269150-d1sgnxc0 116 29 shown show VBN cord-269150-d1sgnxc0 116 30 in in IN cord-269150-d1sgnxc0 116 31 Figure Figure NNP cord-269150-d1sgnxc0 116 32 3A 3a NN cord-269150-d1sgnxc0 116 33 , , , cord-269150-d1sgnxc0 116 34 by by IN cord-269150-d1sgnxc0 116 35 in in IN cord-269150-d1sgnxc0 116 36 vitro vitro FW cord-269150-d1sgnxc0 116 37 transcription transcription NN cord-269150-d1sgnxc0 116 38 . . . cord-269150-d1sgnxc0 117 1 5 5 LS cord-269150-d1sgnxc0 117 2 0 0 CD cord-269150-d1sgnxc0 117 3 -UTRÁ1 -utrá1 NN cord-269150-d1sgnxc0 117 4 contains contain VBZ cord-269150-d1sgnxc0 117 5 stem stem NN cord-269150-d1sgnxc0 117 6 - - HYPH cord-269150-d1sgnxc0 117 7 loops loop NNS cord-269150-d1sgnxc0 117 8 I I NNP cord-269150-d1sgnxc0 117 9 - - HYPH cord-269150-d1sgnxc0 117 10 IV IV NNP cord-269150-d1sgnxc0 117 11 ( ( -LRB- cord-269150-d1sgnxc0 117 12 38 38 CD cord-269150-d1sgnxc0 117 13 ) ) -RRB- cord-269150-d1sgnxc0 117 14 , , , cord-269150-d1sgnxc0 117 15 5 5 CD cord-269150-d1sgnxc0 117 16 0 0 CD cord-269150-d1sgnxc0 117 17 -UTRÁ2 -utrá2 NN cord-269150-d1sgnxc0 117 18 and and CC cord-269150-d1sgnxc0 117 19 5 5 CD cord-269150-d1sgnxc0 117 20 0 0 CD cord-269150-d1sgnxc0 118 1 -UTRÁ3 -UTRÁ3 : cord-269150-d1sgnxc0 118 2 spans span VBZ cord-269150-d1sgnxc0 118 3 stem stem NN cord-269150-d1sgnxc0 118 4 - - HYPH cord-269150-d1sgnxc0 118 5 loops loop NNS cord-269150-d1sgnxc0 119 1 I -PRON- PRP cord-269150-d1sgnxc0 119 2 to to IN cord-269150-d1sgnxc0 119 3 III iii CD cord-269150-d1sgnxc0 119 4 and and CC cord-269150-d1sgnxc0 119 5 II II NNP cord-269150-d1sgnxc0 119 6 to to IN cord-269150-d1sgnxc0 119 7 IV IV NNP cord-269150-d1sgnxc0 119 8 , , , cord-269150-d1sgnxc0 119 9 respectively respectively RB cord-269150-d1sgnxc0 119 10 , , , cord-269150-d1sgnxc0 120 1 whereas whereas IN cord-269150-d1sgnxc0 120 2 5 5 CD cord-269150-d1sgnxc0 120 3 0 0 CD cord-269150-d1sgnxc0 120 4 -UTRÁ4 -utrá4 CC cord-269150-d1sgnxc0 120 5 spans span VBZ cord-269150-d1sgnxc0 120 6 the the DT cord-269150-d1sgnxc0 120 7 rest rest NN cord-269150-d1sgnxc0 120 8 of of IN cord-269150-d1sgnxc0 120 9 the the DT cord-269150-d1sgnxc0 120 10 388 388 CD cord-269150-d1sgnxc0 120 11 nucleotides nucleotide NNS cord-269150-d1sgnxc0 120 12 . . . cord-269150-d1sgnxc0 121 1 The the DT cord-269150-d1sgnxc0 121 2 biotin biotin NN cord-269150-d1sgnxc0 121 3 - - HYPH cord-269150-d1sgnxc0 121 4 labeled label VBN cord-269150-d1sgnxc0 121 5 RNA RNA NNP cord-269150-d1sgnxc0 121 6 transcripts transcript NNS cord-269150-d1sgnxc0 121 7 were be VBD cord-269150-d1sgnxc0 121 8 used use VBN cord-269150-d1sgnxc0 121 9 in in IN cord-269150-d1sgnxc0 121 10 the the DT cord-269150-d1sgnxc0 121 11 biotin biotin NNP cord-269150-d1sgnxc0 121 12 - - HYPH cord-269150-d1sgnxc0 121 13 RNA rna NN cord-269150-d1sgnxc0 121 14 pull pull VB cord-269150-d1sgnxc0 121 15 - - HYPH cord-269150-d1sgnxc0 121 16 down down RP cord-269150-d1sgnxc0 121 17 assay assay NN cord-269150-d1sgnxc0 121 18 ( ( -LRB- cord-269150-d1sgnxc0 121 19 Figure figure NN cord-269150-d1sgnxc0 121 20 3B 3b CD cord-269150-d1sgnxc0 121 21 ) ) -RRB- cord-269150-d1sgnxc0 121 22 to to TO cord-269150-d1sgnxc0 121 23 check check VB cord-269150-d1sgnxc0 121 24 the the DT cord-269150-d1sgnxc0 121 25 efficiency efficiency NN cord-269150-d1sgnxc0 121 26 of of IN cord-269150-d1sgnxc0 121 27 Flag Flag NNP cord-269150-d1sgnxc0 121 28 - - HYPH cord-269150-d1sgnxc0 121 29 tagged tagged NNP cord-269150-d1sgnxc0 121 30 MADP1 MADP1 NNP cord-269150-d1sgnxc0 121 31 co co NN cord-269150-d1sgnxc0 121 32 - - NN cord-269150-d1sgnxc0 121 33 purification purification NN cord-269150-d1sgnxc0 121 34 with with IN cord-269150-d1sgnxc0 121 35 RNA RNA NNP cord-269150-d1sgnxc0 121 36 . . . cord-269150-d1sgnxc0 122 1 Results result NNS cord-269150-d1sgnxc0 122 2 showed show VBD cord-269150-d1sgnxc0 122 3 that that IN cord-269150-d1sgnxc0 122 4 MADP1 MADP1 NNP cord-269150-d1sgnxc0 122 5 was be VBD cord-269150-d1sgnxc0 122 6 co co JJ cord-269150-d1sgnxc0 122 7 - - JJ cord-269150-d1sgnxc0 122 8 purified purify VBN cord-269150-d1sgnxc0 122 9 only only RB cord-269150-d1sgnxc0 122 10 with with IN cord-269150-d1sgnxc0 122 11 transcripts transcript NNS cord-269150-d1sgnxc0 122 12 which which WDT cord-269150-d1sgnxc0 122 13 contain contain VBP cord-269150-d1sgnxc0 122 14 stem stem NN cord-269150-d1sgnxc0 122 15 - - HYPH cord-269150-d1sgnxc0 122 16 loops loop NNS cord-269150-d1sgnxc0 122 17 I I NNP cord-269150-d1sgnxc0 122 18 - - HYPH cord-269150-d1sgnxc0 122 19 III III NNP cord-269150-d1sgnxc0 122 20 of of IN cord-269150-d1sgnxc0 122 21 the the DT cord-269150-d1sgnxc0 122 22 5 5 CD cord-269150-d1sgnxc0 122 23 0 0 CD cord-269150-d1sgnxc0 122 24 -UTR -UTR . cord-269150-d1sgnxc0 123 1 ( ( -LRB- cord-269150-d1sgnxc0 123 2 5 5 CD cord-269150-d1sgnxc0 123 3 0 0 CD cord-269150-d1sgnxc0 123 4 -UTRÁ1 -UTRÁ1 NNS cord-269150-d1sgnxc0 123 5 and and CC cord-269150-d1sgnxc0 123 6 5 5 CD cord-269150-d1sgnxc0 123 7 0 0 CD cord-269150-d1sgnxc0 123 8 -UTRÁ2 -utrá2 CD cord-269150-d1sgnxc0 123 9 ) ) -RRB- cord-269150-d1sgnxc0 123 10 . . . cord-269150-d1sgnxc0 124 1 In in IN cord-269150-d1sgnxc0 124 2 addition addition NN cord-269150-d1sgnxc0 124 3 , , , cord-269150-d1sgnxc0 124 4 stem stem NN cord-269150-d1sgnxc0 124 5 - - HYPH cord-269150-d1sgnxc0 124 6 loop loop NN cord-269150-d1sgnxc0 124 7 I -PRON- PRP cord-269150-d1sgnxc0 124 8 appeared appear VBD cord-269150-d1sgnxc0 124 9 to to TO cord-269150-d1sgnxc0 124 10 be be VB cord-269150-d1sgnxc0 124 11 essential essential JJ cord-269150-d1sgnxc0 124 12 for for IN cord-269150-d1sgnxc0 124 13 interacting interact VBG cord-269150-d1sgnxc0 124 14 with with IN cord-269150-d1sgnxc0 124 15 MADP1 MADP1 NNP cord-269150-d1sgnxc0 124 16 as as IN cord-269150-d1sgnxc0 124 17 its -PRON- PRP$ cord-269150-d1sgnxc0 124 18 absence absence NN cord-269150-d1sgnxc0 124 19 in in IN cord-269150-d1sgnxc0 124 20 5 5 CD cord-269150-d1sgnxc0 124 21 0 0 CD cord-269150-d1sgnxc0 124 22 -UTRÁ3 -utrá3 RB cord-269150-d1sgnxc0 124 23 abolished abolish VBD cord-269150-d1sgnxc0 124 24 the the DT cord-269150-d1sgnxc0 124 25 interaction interaction NN cord-269150-d1sgnxc0 124 26 with with IN cord-269150-d1sgnxc0 124 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 124 28 ( ( -LRB- cord-269150-d1sgnxc0 124 29 Figure figure NN cord-269150-d1sgnxc0 124 30 3B 3b CD cord-269150-d1sgnxc0 124 31 ) ) -RRB- cord-269150-d1sgnxc0 124 32 . . . cord-269150-d1sgnxc0 125 1 The the DT cord-269150-d1sgnxc0 125 2 rest rest NN cord-269150-d1sgnxc0 125 3 region region NN cord-269150-d1sgnxc0 125 4 of of IN cord-269150-d1sgnxc0 125 5 the the DT cord-269150-d1sgnxc0 125 6 5 5 CD cord-269150-d1sgnxc0 125 7 0 0 CD cord-269150-d1sgnxc0 125 8 -UTR -UTR , cord-269150-d1sgnxc0 125 9 ( ( -LRB- cord-269150-d1sgnxc0 125 10 5 5 CD cord-269150-d1sgnxc0 125 11 0 0 CD cord-269150-d1sgnxc0 125 12 -UTRÁ4 -utrá4 NN cord-269150-d1sgnxc0 125 13 ) ) -RRB- cord-269150-d1sgnxc0 125 14 did do VBD cord-269150-d1sgnxc0 125 15 not not RB cord-269150-d1sgnxc0 125 16 appear appear VB cord-269150-d1sgnxc0 125 17 to to TO cord-269150-d1sgnxc0 125 18 interact interact VB cord-269150-d1sgnxc0 125 19 with with IN cord-269150-d1sgnxc0 125 20 MADP1 MADP1 NNP cord-269150-d1sgnxc0 125 21 ( ( -LRB- cord-269150-d1sgnxc0 125 22 Figure figure NN cord-269150-d1sgnxc0 125 23 3B 3b CD cord-269150-d1sgnxc0 125 24 ) ) -RRB- cord-269150-d1sgnxc0 125 25 . . . cord-269150-d1sgnxc0 126 1 To to TO cord-269150-d1sgnxc0 126 2 confirm confirm VB cord-269150-d1sgnxc0 126 3 further further RB cord-269150-d1sgnxc0 126 4 the the DT cord-269150-d1sgnxc0 126 5 role role NN cord-269150-d1sgnxc0 126 6 of of IN cord-269150-d1sgnxc0 126 7 stem stem NN cord-269150-d1sgnxc0 126 8 - - HYPH cord-269150-d1sgnxc0 126 9 loop loop NN cord-269150-d1sgnxc0 126 10 I -PRON- PRP cord-269150-d1sgnxc0 126 11 in in IN cord-269150-d1sgnxc0 126 12 the the DT cord-269150-d1sgnxc0 126 13 interaction interaction NN cord-269150-d1sgnxc0 126 14 between between IN cord-269150-d1sgnxc0 126 15 MADP1 MADP1 NNP cord-269150-d1sgnxc0 126 16 and and CC cord-269150-d1sgnxc0 126 17 IBV IBV NNP cord-269150-d1sgnxc0 126 18 5 5 CD cord-269150-d1sgnxc0 126 19 0 0 CD cord-269150-d1sgnxc0 126 20 -UTR -utr NN cord-269150-d1sgnxc0 126 21 , , , cord-269150-d1sgnxc0 126 22 two two CD cord-269150-d1sgnxc0 126 23 mutants mutant NNS cord-269150-d1sgnxc0 126 24 were be VBD cord-269150-d1sgnxc0 126 25 constructed construct VBN cord-269150-d1sgnxc0 126 26 , , , cord-269150-d1sgnxc0 126 27 based base VBN cord-269150-d1sgnxc0 126 28 on on IN cord-269150-d1sgnxc0 126 29 5 5 CD cord-269150-d1sgnxc0 126 30 0 0 CD cord-269150-d1sgnxc0 127 1 -UTRÁ2 -utrá2 UH cord-269150-d1sgnxc0 127 2 . . . cord-269150-d1sgnxc0 128 1 5 5 LS cord-269150-d1sgnxc0 128 2 0 0 CD cord-269150-d1sgnxc0 129 1 -UTRÁ2M1 -UTRÁ2M1 NNP cord-269150-d1sgnxc0 129 2 carried carry VBD cord-269150-d1sgnxc0 129 3 two two CD cord-269150-d1sgnxc0 129 4 - - HYPH cord-269150-d1sgnxc0 129 5 point point NN cord-269150-d1sgnxc0 129 6 mutations mutation NNS cord-269150-d1sgnxc0 129 7 at at IN cord-269150-d1sgnxc0 129 8 nucleotide nucleotide JJ cord-269150-d1sgnxc0 129 9 residues residue NNS cord-269150-d1sgnxc0 129 10 11 11 CD cord-269150-d1sgnxc0 129 11 and and CC cord-269150-d1sgnxc0 129 12 12 12 CD cord-269150-d1sgnxc0 129 13 from from IN cord-269150-d1sgnxc0 129 14 GA GA NNP cord-269150-d1sgnxc0 129 15 to to IN cord-269150-d1sgnxc0 129 16 CU CU NNP cord-269150-d1sgnxc0 129 17 , , , cord-269150-d1sgnxc0 129 18 which which WDT cord-269150-d1sgnxc0 129 19 would would MD cord-269150-d1sgnxc0 129 20 disrupt disrupt VB cord-269150-d1sgnxc0 129 21 the the DT cord-269150-d1sgnxc0 129 22 structure structure NN cord-269150-d1sgnxc0 129 23 of of IN cord-269150-d1sgnxc0 129 24 stem stem NN cord-269150-d1sgnxc0 129 25 - - HYPH cord-269150-d1sgnxc0 129 26 loop loop NN cord-269150-d1sgnxc0 129 27 I i NN cord-269150-d1sgnxc0 129 28 ( ( -LRB- cord-269150-d1sgnxc0 129 29 Figure Figure NNP cord-269150-d1sgnxc0 129 30 3C 3C NNP cord-269150-d1sgnxc0 129 31 ) ) -RRB- cord-269150-d1sgnxc0 129 32 , , , cord-269150-d1sgnxc0 129 33 and and CC cord-269150-d1sgnxc0 129 34 5 5 CD cord-269150-d1sgnxc0 129 35 0 0 CD cord-269150-d1sgnxc0 129 36 -UTRÁ2M2 -UTRÁ2M2 NFP cord-269150-d1sgnxc0 129 37 carried carry VBN cord-269150-d1sgnxc0 129 38 additional additional JJ cord-269150-d1sgnxc0 129 39 mutations mutation NNS cord-269150-d1sgnxc0 129 40 at at IN cord-269150-d1sgnxc0 129 41 residues residue NNS cord-269150-d1sgnxc0 129 42 25 25 CD cord-269150-d1sgnxc0 129 43 and and CC cord-269150-d1sgnxc0 129 44 26 26 CD cord-269150-d1sgnxc0 129 45 from from IN cord-269150-d1sgnxc0 129 46 UC UC NNP cord-269150-d1sgnxc0 129 47 to to IN cord-269150-d1sgnxc0 129 48 AG AG NNP cord-269150-d1sgnxc0 129 49 ( ( -LRB- cord-269150-d1sgnxc0 129 50 Figure Figure NNP cord-269150-d1sgnxc0 129 51 3C 3C NNP cord-269150-d1sgnxc0 129 52 ) ) -RRB- cord-269150-d1sgnxc0 129 53 , , , cord-269150-d1sgnxc0 129 54 which which WDT cord-269150-d1sgnxc0 129 55 would would MD cord-269150-d1sgnxc0 129 56 restore restore VB cord-269150-d1sgnxc0 129 57 the the DT cord-269150-d1sgnxc0 129 58 secondary secondary JJ cord-269150-d1sgnxc0 129 59 structure structure NN cord-269150-d1sgnxc0 129 60 of of IN cord-269150-d1sgnxc0 129 61 stem stem NN cord-269150-d1sgnxc0 129 62 - - HYPH cord-269150-d1sgnxc0 129 63 loop loop NN cord-269150-d1sgnxc0 129 64 I. i. NN cord-269150-d1sgnxc0 130 1 The the DT cord-269150-d1sgnxc0 130 2 mutant mutant JJ cord-269150-d1sgnxc0 130 3 RNAs rna NNS cord-269150-d1sgnxc0 130 4 spanning span VBG cord-269150-d1sgnxc0 130 5 stemloops stemloop NNS cord-269150-d1sgnxc0 130 6 I I NNP cord-269150-d1sgnxc0 130 7 - - HYPH cord-269150-d1sgnxc0 130 8 III III NNP cord-269150-d1sgnxc0 130 9 were be VBD cord-269150-d1sgnxc0 130 10 assessed assess VBN cord-269150-d1sgnxc0 130 11 for for IN cord-269150-d1sgnxc0 130 12 its -PRON- PRP$ cord-269150-d1sgnxc0 130 13 ability ability NN cord-269150-d1sgnxc0 130 14 to to TO cord-269150-d1sgnxc0 130 15 bind bind VB cord-269150-d1sgnxc0 130 16 MADP1 MADP1 NNP cord-269150-d1sgnxc0 130 17 . . . cord-269150-d1sgnxc0 131 1 The the DT cord-269150-d1sgnxc0 131 2 result result NN cord-269150-d1sgnxc0 131 3 indicated indicate VBD cord-269150-d1sgnxc0 131 4 that that IN cord-269150-d1sgnxc0 131 5 the the DT cord-269150-d1sgnxc0 131 6 integrity integrity NN cord-269150-d1sgnxc0 131 7 of of IN cord-269150-d1sgnxc0 131 8 stem stem NN cord-269150-d1sgnxc0 131 9 - - HYPH cord-269150-d1sgnxc0 131 10 loop loop NN cord-269150-d1sgnxc0 131 11 I -PRON- PRP cord-269150-d1sgnxc0 131 12 may may MD cord-269150-d1sgnxc0 131 13 be be VB cord-269150-d1sgnxc0 131 14 essential essential JJ cord-269150-d1sgnxc0 131 15 for for IN cord-269150-d1sgnxc0 131 16 the the DT cord-269150-d1sgnxc0 131 17 interaction interaction NN cord-269150-d1sgnxc0 131 18 between between IN cord-269150-d1sgnxc0 131 19 the the DT cord-269150-d1sgnxc0 131 20 5 5 CD cord-269150-d1sgnxc0 131 21 0 0 CD cord-269150-d1sgnxc0 131 22 -UTR -utr NN cord-269150-d1sgnxc0 131 23 with with IN cord-269150-d1sgnxc0 131 24 MADP1 MADP1 NNP cord-269150-d1sgnxc0 131 25 ( ( -LRB- cord-269150-d1sgnxc0 131 26 Figure Figure NNP cord-269150-d1sgnxc0 131 27 3D 3D NNP cord-269150-d1sgnxc0 131 28 ) ) -RRB- cord-269150-d1sgnxc0 131 29 , , , cord-269150-d1sgnxc0 131 30 as as IN cord-269150-d1sgnxc0 131 31 the the DT cord-269150-d1sgnxc0 131 32 stem stem NN cord-269150-d1sgnxc0 131 33 - - HYPH cord-269150-d1sgnxc0 131 34 loop loop NN cord-269150-d1sgnxc0 131 35 disrupting disrupt VBG cord-269150-d1sgnxc0 131 36 mutation mutation NN cord-269150-d1sgnxc0 131 37 ( ( -LRB- cord-269150-d1sgnxc0 131 38 5 5 CD cord-269150-d1sgnxc0 131 39 0 0 CD cord-269150-d1sgnxc0 131 40 -UTRÁ2M1 -utrá2m1 ADD cord-269150-d1sgnxc0 131 41 ) ) -RRB- cord-269150-d1sgnxc0 131 42 failed fail VBD cord-269150-d1sgnxc0 131 43 to to TO cord-269150-d1sgnxc0 131 44 interact interact VB cord-269150-d1sgnxc0 131 45 with with IN cord-269150-d1sgnxc0 131 46 MADP1 MADP1 NNP cord-269150-d1sgnxc0 131 47 . . . cord-269150-d1sgnxc0 132 1 The the DT cord-269150-d1sgnxc0 132 2 stem stem NN cord-269150-d1sgnxc0 132 3 - - HYPH cord-269150-d1sgnxc0 132 4 loop loop NN cord-269150-d1sgnxc0 132 5 restoring restore VBG cord-269150-d1sgnxc0 132 6 mutation mutation NN cord-269150-d1sgnxc0 132 7 at at IN cord-269150-d1sgnxc0 132 8 nucleotide nucleotide JJ cord-269150-d1sgnxc0 132 9 residues residue NNS cord-269150-d1sgnxc0 132 10 25 25 CD cord-269150-d1sgnxc0 132 11 and and CC cord-269150-d1sgnxc0 132 12 26 26 CD cord-269150-d1sgnxc0 132 13 from from IN cord-269150-d1sgnxc0 132 14 UC UC NNP cord-269150-d1sgnxc0 132 15 to to IN cord-269150-d1sgnxc0 132 16 AG AG NNP cord-269150-d1sgnxc0 132 17 was be VBD cord-269150-d1sgnxc0 132 18 able able JJ cord-269150-d1sgnxc0 132 19 to to TO cord-269150-d1sgnxc0 132 20 restore restore VB cord-269150-d1sgnxc0 132 21 partially partially RB cord-269150-d1sgnxc0 132 22 the the DT cord-269150-d1sgnxc0 132 23 interaction interaction NN cord-269150-d1sgnxc0 132 24 ( ( -LRB- cord-269150-d1sgnxc0 132 25 5 5 CD cord-269150-d1sgnxc0 132 26 0 0 CD cord-269150-d1sgnxc0 132 27 -UTRÁ2M2 -utrá2m2 ADD cord-269150-d1sgnxc0 132 28 ) ) -RRB- cord-269150-d1sgnxc0 133 1 ( ( -LRB- cord-269150-d1sgnxc0 133 2 Figure Figure NNP cord-269150-d1sgnxc0 133 3 3D 3D NNP cord-269150-d1sgnxc0 133 4 ) ) -RRB- cord-269150-d1sgnxc0 133 5 . . . cord-269150-d1sgnxc0 134 1 This this DT cord-269150-d1sgnxc0 134 2 result result NN cord-269150-d1sgnxc0 134 3 affirmed affirm VBD cord-269150-d1sgnxc0 134 4 the the DT cord-269150-d1sgnxc0 134 5 conclusion conclusion NN cord-269150-d1sgnxc0 134 6 that that IN cord-269150-d1sgnxc0 134 7 the the DT cord-269150-d1sgnxc0 134 8 secondary secondary JJ cord-269150-d1sgnxc0 134 9 structure structure NN cord-269150-d1sgnxc0 134 10 of of IN cord-269150-d1sgnxc0 134 11 stem stem NN cord-269150-d1sgnxc0 134 12 - - HYPH cord-269150-d1sgnxc0 134 13 loop loop NN cord-269150-d1sgnxc0 134 14 I i NN cord-269150-d1sgnxc0 134 15 of of IN cord-269150-d1sgnxc0 134 16 IBV IBV NNP cord-269150-d1sgnxc0 134 17 5 5 CD cord-269150-d1sgnxc0 134 18 0 0 CD cord-269150-d1sgnxc0 134 19 -UTR -utr NN cord-269150-d1sgnxc0 134 20 is be VBZ cord-269150-d1sgnxc0 134 21 indispensable indispensable JJ cord-269150-d1sgnxc0 134 22 for for IN cord-269150-d1sgnxc0 134 23 its -PRON- PRP$ cord-269150-d1sgnxc0 134 24 interaction interaction NN cord-269150-d1sgnxc0 134 25 with with IN cord-269150-d1sgnxc0 134 26 MADP1 MADP1 NNP cord-269150-d1sgnxc0 134 27 . . . cord-269150-d1sgnxc0 135 1 The the DT cord-269150-d1sgnxc0 135 2 RNA RNA NNP cord-269150-d1sgnxc0 135 3 recognition recognition NN cord-269150-d1sgnxc0 135 4 motif motif NN cord-269150-d1sgnxc0 135 5 ( ( -LRB- cord-269150-d1sgnxc0 135 6 RRM RRM NNP cord-269150-d1sgnxc0 135 7 ) ) -RRB- cord-269150-d1sgnxc0 135 8 of of IN cord-269150-d1sgnxc0 135 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 135 10 is be VBZ cord-269150-d1sgnxc0 135 11 responsible responsible JJ cord-269150-d1sgnxc0 135 12 for for IN cord-269150-d1sgnxc0 135 13 its -PRON- PRP$ cord-269150-d1sgnxc0 135 14 interaction interaction NN cord-269150-d1sgnxc0 135 15 with with IN cord-269150-d1sgnxc0 135 16 IBV IBV NNP cord-269150-d1sgnxc0 135 17 5 5 CD cord-269150-d1sgnxc0 135 18 0 0 CD cord-269150-d1sgnxc0 136 1 -UTR -UTR . cord-269150-d1sgnxc0 137 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 137 2 contains contain VBZ cord-269150-d1sgnxc0 137 3 two two CD cord-269150-d1sgnxc0 137 4 nucleic nucleic JJ cord-269150-d1sgnxc0 137 5 acid acid NN cord-269150-d1sgnxc0 137 6 binding binding NN cord-269150-d1sgnxc0 137 7 domains domain NNS cord-269150-d1sgnxc0 137 8 , , , cord-269150-d1sgnxc0 137 9 the the DT cord-269150-d1sgnxc0 137 10 RNA RNA NNP cord-269150-d1sgnxc0 137 11 recognition recognition NN cord-269150-d1sgnxc0 137 12 motif motif NN cord-269150-d1sgnxc0 137 13 ( ( -LRB- cord-269150-d1sgnxc0 137 14 RRM RRM NNP cord-269150-d1sgnxc0 137 15 ) ) -RRB- cord-269150-d1sgnxc0 137 16 in in IN cord-269150-d1sgnxc0 137 17 the the DT cord-269150-d1sgnxc0 137 18 N n CD cord-269150-d1sgnxc0 137 19 - - HYPH cord-269150-d1sgnxc0 137 20 terminal terminal NN cord-269150-d1sgnxc0 137 21 region region NN cord-269150-d1sgnxc0 137 22 and and CC cord-269150-d1sgnxc0 137 23 the the DT cord-269150-d1sgnxc0 137 24 universal universal JJ cord-269150-d1sgnxc0 137 25 minicircle minicircle NNP cord-269150-d1sgnxc0 137 26 sequence sequence NN cord-269150-d1sgnxc0 137 27 binding bind VBG cord-269150-d1sgnxc0 137 28 protein protein NN cord-269150-d1sgnxc0 137 29 ( ( -LRB- cord-269150-d1sgnxc0 137 30 UMSBP UMSBP NNP cord-269150-d1sgnxc0 137 31 ) ) -RRB- cord-269150-d1sgnxc0 137 32 in in IN cord-269150-d1sgnxc0 137 33 the the DT cord-269150-d1sgnxc0 137 34 central central JJ cord-269150-d1sgnxc0 137 35 region region NN cord-269150-d1sgnxc0 137 36 . . . cord-269150-d1sgnxc0 138 1 In in IN cord-269150-d1sgnxc0 138 2 order order NN cord-269150-d1sgnxc0 138 3 to to TO cord-269150-d1sgnxc0 138 4 identify identify VB cord-269150-d1sgnxc0 138 5 the the DT cord-269150-d1sgnxc0 138 6 domain domain NN cord-269150-d1sgnxc0 138 7 involved involve VBN cord-269150-d1sgnxc0 138 8 in in IN cord-269150-d1sgnxc0 138 9 the the DT cord-269150-d1sgnxc0 138 10 interaction interaction NN cord-269150-d1sgnxc0 138 11 between between IN cord-269150-d1sgnxc0 138 12 MADP1 MADP1 NNP cord-269150-d1sgnxc0 138 13 and and CC cord-269150-d1sgnxc0 138 14 IBV IBV NNP cord-269150-d1sgnxc0 138 15 5 5 CD cord-269150-d1sgnxc0 138 16 0 0 CD cord-269150-d1sgnxc0 138 17 -UTR -utr NN cord-269150-d1sgnxc0 138 18 , , , cord-269150-d1sgnxc0 138 19 a a DT cord-269150-d1sgnxc0 138 20 series series NN cord-269150-d1sgnxc0 138 21 of of IN cord-269150-d1sgnxc0 138 22 truncation truncation NN cord-269150-d1sgnxc0 138 23 mutants mutant NNS cord-269150-d1sgnxc0 138 24 of of IN cord-269150-d1sgnxc0 138 25 the the DT cord-269150-d1sgnxc0 138 26 protein protein NN cord-269150-d1sgnxc0 138 27 were be VBD cord-269150-d1sgnxc0 138 28 created create VBN cord-269150-d1sgnxc0 138 29 ( ( -LRB- cord-269150-d1sgnxc0 138 30 Figure figure NN cord-269150-d1sgnxc0 138 31 4A 4a CD cord-269150-d1sgnxc0 138 32 ) ) -RRB- cord-269150-d1sgnxc0 138 33 . . . cord-269150-d1sgnxc0 139 1 The the DT cord-269150-d1sgnxc0 139 2 first first JJ cord-269150-d1sgnxc0 139 3 three three CD cord-269150-d1sgnxc0 139 4 mutants mutant NNS cord-269150-d1sgnxc0 139 5 , , , cord-269150-d1sgnxc0 139 6 Madp1n madp1n NN cord-269150-d1sgnxc0 139 7 which which WDT cord-269150-d1sgnxc0 139 8 contains contain VBZ cord-269150-d1sgnxc0 139 9 the the DT cord-269150-d1sgnxc0 139 10 RRM RRM NNP cord-269150-d1sgnxc0 139 11 domain domain NN cord-269150-d1sgnxc0 139 12 , , , cord-269150-d1sgnxc0 139 13 Madp1 Madp1 NNP cord-269150-d1sgnxc0 139 14 m m NNP cord-269150-d1sgnxc0 139 15 spans span VBZ cord-269150-d1sgnxc0 139 16 the the DT cord-269150-d1sgnxc0 139 17 zinc zinc NN cord-269150-d1sgnxc0 139 18 finger finger NN cord-269150-d1sgnxc0 139 19 domain domain NN cord-269150-d1sgnxc0 140 1 and and CC cord-269150-d1sgnxc0 140 2 Madp1c madp1c NN cord-269150-d1sgnxc0 140 3 contains contain VBZ cord-269150-d1sgnxc0 140 4 mostly mostly RB cord-269150-d1sgnxc0 140 5 phosphorylation phosphorylation NN cord-269150-d1sgnxc0 140 6 sites site NNS cord-269150-d1sgnxc0 140 7 , , , cord-269150-d1sgnxc0 140 8 were be VBD cord-269150-d1sgnxc0 140 9 assessed assess VBN cord-269150-d1sgnxc0 140 10 for for IN cord-269150-d1sgnxc0 140 11 their -PRON- PRP$ cord-269150-d1sgnxc0 140 12 ability ability NN cord-269150-d1sgnxc0 140 13 to to TO cord-269150-d1sgnxc0 140 14 interact interact VB cord-269150-d1sgnxc0 140 15 with with IN cord-269150-d1sgnxc0 140 16 IBV IBV NNP cord-269150-d1sgnxc0 140 17 5 5 CD cord-269150-d1sgnxc0 140 18 0 0 CD cord-269150-d1sgnxc0 140 19 -UTR -utr NN cord-269150-d1sgnxc0 140 20 . . . cord-269150-d1sgnxc0 141 1 Only only RB cord-269150-d1sgnxc0 141 2 Madp1n Madp1n NNP cord-269150-d1sgnxc0 141 3 retained retain VBD cord-269150-d1sgnxc0 141 4 a a DT cord-269150-d1sgnxc0 141 5 low low JJ cord-269150-d1sgnxc0 141 6 level level NN cord-269150-d1sgnxc0 141 7 of of IN cord-269150-d1sgnxc0 141 8 the the DT cord-269150-d1sgnxc0 141 9 RNA RNA NNP cord-269150-d1sgnxc0 141 10 - - HYPH cord-269150-d1sgnxc0 141 11 binding bind VBG cord-269150-d1sgnxc0 141 12 activity activity NN cord-269150-d1sgnxc0 141 13 ( ( -LRB- cord-269150-d1sgnxc0 141 14 Figure figure NN cord-269150-d1sgnxc0 141 15 4B 4b NN cord-269150-d1sgnxc0 141 16 , , , cord-269150-d1sgnxc0 141 17 1n 1n LS cord-269150-d1sgnxc0 141 18 ) ) -RRB- cord-269150-d1sgnxc0 141 19 and and CC cord-269150-d1sgnxc0 141 20 negligible negligible JJ cord-269150-d1sgnxc0 141 21 activity activity NN cord-269150-d1sgnxc0 141 22 was be VBD cord-269150-d1sgnxc0 141 23 detected detect VBN cord-269150-d1sgnxc0 141 24 for for IN cord-269150-d1sgnxc0 141 25 the the DT cord-269150-d1sgnxc0 141 26 other other JJ cord-269150-d1sgnxc0 141 27 two two CD cord-269150-d1sgnxc0 141 28 truncated truncated JJ cord-269150-d1sgnxc0 141 29 proteins protein NNS cord-269150-d1sgnxc0 141 30 ( ( -LRB- cord-269150-d1sgnxc0 141 31 Figure figure NN cord-269150-d1sgnxc0 141 32 4B 4b NN cord-269150-d1sgnxc0 141 33 , , , cord-269150-d1sgnxc0 141 34 1 1 CD cord-269150-d1sgnxc0 141 35 m m NN cord-269150-d1sgnxc0 141 36 , , , cord-269150-d1sgnxc0 141 37 1c 1c CD cord-269150-d1sgnxc0 141 38 ) ) -RRB- cord-269150-d1sgnxc0 141 39 . . . cord-269150-d1sgnxc0 142 1 As as IN cord-269150-d1sgnxc0 142 2 the the DT cord-269150-d1sgnxc0 142 3 RNA RNA NNP cord-269150-d1sgnxc0 142 4 - - HYPH cord-269150-d1sgnxc0 142 5 binding bind VBG cord-269150-d1sgnxc0 142 6 activity activity NN cord-269150-d1sgnxc0 142 7 for for IN cord-269150-d1sgnxc0 142 8 Madp1n madp1n NN cord-269150-d1sgnxc0 142 9 fragment fragment NN cord-269150-d1sgnxc0 142 10 was be VBD cord-269150-d1sgnxc0 142 11 much much RB cord-269150-d1sgnxc0 142 12 lower low JJR cord-269150-d1sgnxc0 142 13 compared compare VBN cord-269150-d1sgnxc0 142 14 to to IN cord-269150-d1sgnxc0 142 15 the the DT cord-269150-d1sgnxc0 142 16 full full JJ cord-269150-d1sgnxc0 142 17 - - HYPH cord-269150-d1sgnxc0 142 18 length length NN cord-269150-d1sgnxc0 142 19 protein protein NN cord-269150-d1sgnxc0 142 20 , , , cord-269150-d1sgnxc0 142 21 three three CD cord-269150-d1sgnxc0 142 22 more more JJR cord-269150-d1sgnxc0 142 23 mutants mutant NNS cord-269150-d1sgnxc0 142 24 were be VBD cord-269150-d1sgnxc0 142 25 created create VBN cord-269150-d1sgnxc0 142 26 to to TO cord-269150-d1sgnxc0 142 27 extend extend VB cord-269150-d1sgnxc0 142 28 the the DT cord-269150-d1sgnxc0 142 29 Madp1n Madp1n NNP cord-269150-d1sgnxc0 142 30 fragment fragment NN cord-269150-d1sgnxc0 142 31 ( ( -LRB- cord-269150-d1sgnxc0 142 32 Figure figure NN cord-269150-d1sgnxc0 142 33 4A 4a CD cord-269150-d1sgnxc0 142 34 ) ) -RRB- cord-269150-d1sgnxc0 142 35 . . . cord-269150-d1sgnxc0 143 1 An an DT cord-269150-d1sgnxc0 143 2 extension extension NN cord-269150-d1sgnxc0 143 3 of of IN cord-269150-d1sgnxc0 143 4 14 14 CD cord-269150-d1sgnxc0 143 5 or or CC cord-269150-d1sgnxc0 143 6 31 31 CD cord-269150-d1sgnxc0 143 7 amino amino NN cord-269150-d1sgnxc0 143 8 acid acid NN cord-269150-d1sgnxc0 143 9 residues residue NNS cord-269150-d1sgnxc0 143 10 was be VBD cord-269150-d1sgnxc0 143 11 made make VBN cord-269150-d1sgnxc0 143 12 for for IN cord-269150-d1sgnxc0 143 13 mutants mutant NNS cord-269150-d1sgnxc0 143 14 Madp1x Madp1x NNP cord-269150-d1sgnxc0 143 15 and and CC cord-269150-d1sgnxc0 143 16 Madp1z Madp1z NNP cord-269150-d1sgnxc0 143 17 , , , cord-269150-d1sgnxc0 143 18 respectively respectively RB cord-269150-d1sgnxc0 143 19 . . . cord-269150-d1sgnxc0 144 1 A a DT cord-269150-d1sgnxc0 144 2 truncation truncation NN cord-269150-d1sgnxc0 144 3 at at IN cord-269150-d1sgnxc0 144 4 the the DT cord-269150-d1sgnxc0 144 5 N n CD cord-269150-d1sgnxc0 144 6 - - HYPH cord-269150-d1sgnxc0 144 7 terminus terminus NN cord-269150-d1sgnxc0 144 8 by by IN cord-269150-d1sgnxc0 144 9 40 40 CD cord-269150-d1sgnxc0 144 10 residues residue NNS cord-269150-d1sgnxc0 144 11 as as RB cord-269150-d1sgnxc0 144 12 well well RB cord-269150-d1sgnxc0 144 13 as as IN cord-269150-d1sgnxc0 144 14 an an DT cord-269150-d1sgnxc0 144 15 extension extension NN cord-269150-d1sgnxc0 144 16 by by IN cord-269150-d1sgnxc0 144 17 14 14 CD cord-269150-d1sgnxc0 144 18 amino amino NN cord-269150-d1sgnxc0 144 19 acid acid NN cord-269150-d1sgnxc0 144 20 residues residue NNS cord-269150-d1sgnxc0 144 21 was be VBD cord-269150-d1sgnxc0 144 22 made make VBN cord-269150-d1sgnxc0 144 23 for for IN cord-269150-d1sgnxc0 144 24 Madp1y Madp1y NNP cord-269150-d1sgnxc0 144 25 . . . cord-269150-d1sgnxc0 145 1 It -PRON- PRP cord-269150-d1sgnxc0 145 2 was be VBD cord-269150-d1sgnxc0 145 3 observed observe VBN cord-269150-d1sgnxc0 145 4 that that IN cord-269150-d1sgnxc0 145 5 both both CC cord-269150-d1sgnxc0 145 6 Madp1x Madp1x NNP cord-269150-d1sgnxc0 145 7 and and CC cord-269150-d1sgnxc0 145 8 Madp1z Madp1z NNP cord-269150-d1sgnxc0 145 9 bound bind VBN cord-269150-d1sgnxc0 145 10 to to IN cord-269150-d1sgnxc0 145 11 IBV IBV NNP cord-269150-d1sgnxc0 145 12 5 5 CD cord-269150-d1sgnxc0 145 13 0 0 NFP cord-269150-d1sgnxc0 145 14 -UTR -utr NN cord-269150-d1sgnxc0 145 15 more more RBR cord-269150-d1sgnxc0 145 16 strongly strongly RB cord-269150-d1sgnxc0 145 17 than than IN cord-269150-d1sgnxc0 145 18 did do VBD cord-269150-d1sgnxc0 145 19 the the DT cord-269150-d1sgnxc0 145 20 full full JJ cord-269150-d1sgnxc0 145 21 - - HYPH cord-269150-d1sgnxc0 145 22 length length NN cord-269150-d1sgnxc0 145 23 protein protein NN cord-269150-d1sgnxc0 145 24 as as RB cord-269150-d1sgnxc0 145 25 well well RB cord-269150-d1sgnxc0 145 26 as as IN cord-269150-d1sgnxc0 145 27 Madp1n madp1n NN cord-269150-d1sgnxc0 145 28 mutant mutant JJ cord-269150-d1sgnxc0 145 29 protein protein NN cord-269150-d1sgnxc0 145 30 ( ( -LRB- cord-269150-d1sgnxc0 145 31 Figure figure NN cord-269150-d1sgnxc0 145 32 4B 4b NN cord-269150-d1sgnxc0 145 33 , , , cord-269150-d1sgnxc0 145 34 1x 1x CD cord-269150-d1sgnxc0 145 35 , , , cord-269150-d1sgnxc0 145 36 1z 1z CD cord-269150-d1sgnxc0 145 37 ) ) -RRB- cord-269150-d1sgnxc0 145 38 . . . cord-269150-d1sgnxc0 146 1 Madp1y Madp1y NNP cord-269150-d1sgnxc0 146 2 , , , cord-269150-d1sgnxc0 146 3 on on IN cord-269150-d1sgnxc0 146 4 the the DT cord-269150-d1sgnxc0 146 5 other other JJ cord-269150-d1sgnxc0 146 6 hand hand NN cord-269150-d1sgnxc0 146 7 , , , cord-269150-d1sgnxc0 146 8 bound bind VBN cord-269150-d1sgnxc0 146 9 weakly weakly RB cord-269150-d1sgnxc0 146 10 to to IN cord-269150-d1sgnxc0 146 11 the the DT cord-269150-d1sgnxc0 146 12 RNA RNA NNP cord-269150-d1sgnxc0 146 13 fragment fragment NN cord-269150-d1sgnxc0 146 14 ( ( -LRB- cord-269150-d1sgnxc0 146 15 Figure figure NN cord-269150-d1sgnxc0 146 16 4B 4b NN cord-269150-d1sgnxc0 146 17 , , , cord-269150-d1sgnxc0 146 18 1y 1y CD cord-269150-d1sgnxc0 146 19 ) ) -RRB- cord-269150-d1sgnxc0 146 20 . . . cord-269150-d1sgnxc0 147 1 Hence hence RB cord-269150-d1sgnxc0 147 2 , , , cord-269150-d1sgnxc0 147 3 the the DT cord-269150-d1sgnxc0 147 4 14 14 CD cord-269150-d1sgnxc0 147 5 amino amino NN cord-269150-d1sgnxc0 147 6 acid acid NN cord-269150-d1sgnxc0 147 7 extension extension NN cord-269150-d1sgnxc0 147 8 beyond beyond IN cord-269150-d1sgnxc0 147 9 the the DT cord-269150-d1sgnxc0 147 10 RRM rrm NN cord-269150-d1sgnxc0 147 11 ( ( -LRB- cord-269150-d1sgnxc0 147 12 Madp1x madp1x NN cord-269150-d1sgnxc0 147 13 ) ) -RRB- cord-269150-d1sgnxc0 147 14 may may MD cord-269150-d1sgnxc0 147 15 have have VB cord-269150-d1sgnxc0 147 16 been be VBN cord-269150-d1sgnxc0 147 17 required require VBN cord-269150-d1sgnxc0 147 18 to to TO cord-269150-d1sgnxc0 147 19 preserve preserve VB cord-269150-d1sgnxc0 147 20 the the DT cord-269150-d1sgnxc0 147 21 integrity integrity NN cord-269150-d1sgnxc0 147 22 of of IN cord-269150-d1sgnxc0 147 23 the the DT cord-269150-d1sgnxc0 147 24 protein protein NN cord-269150-d1sgnxc0 147 25 structure structure NN cord-269150-d1sgnxc0 147 26 and and CC cord-269150-d1sgnxc0 147 27 that that IN cord-269150-d1sgnxc0 147 28 the the DT cord-269150-d1sgnxc0 147 29 40 40 CD cord-269150-d1sgnxc0 147 30 amino amino NN cord-269150-d1sgnxc0 147 31 acid acid NN cord-269150-d1sgnxc0 147 32 residues residue NNS cord-269150-d1sgnxc0 147 33 at at IN cord-269150-d1sgnxc0 147 34 the the DT cord-269150-d1sgnxc0 147 35 N n CD cord-269150-d1sgnxc0 147 36 - - HYPH cord-269150-d1sgnxc0 147 37 terminus terminus NN cord-269150-d1sgnxc0 147 38 of of IN cord-269150-d1sgnxc0 147 39 MADP1 MADP1 NNP cord-269150-d1sgnxc0 147 40 are be VBP cord-269150-d1sgnxc0 147 41 required require VBN cord-269150-d1sgnxc0 147 42 for for IN cord-269150-d1sgnxc0 147 43 efficient efficient JJ cord-269150-d1sgnxc0 147 44 RNA RNA NNP cord-269150-d1sgnxc0 147 45 binding binding NN cord-269150-d1sgnxc0 147 46 . . . cord-269150-d1sgnxc0 148 1 As as IN cord-269150-d1sgnxc0 148 2 the the DT cord-269150-d1sgnxc0 148 3 RRM RRM NNP cord-269150-d1sgnxc0 148 4 domain domain NN cord-269150-d1sgnxc0 148 5 was be VBD cord-269150-d1sgnxc0 148 6 determined determine VBN cord-269150-d1sgnxc0 148 7 to to TO cord-269150-d1sgnxc0 148 8 be be VB cord-269150-d1sgnxc0 148 9 responsible responsible JJ cord-269150-d1sgnxc0 148 10 for for IN cord-269150-d1sgnxc0 148 11 the the DT cord-269150-d1sgnxc0 148 12 interaction interaction NN cord-269150-d1sgnxc0 148 13 , , , cord-269150-d1sgnxc0 148 14 information information NN cord-269150-d1sgnxc0 148 15 available available JJ cord-269150-d1sgnxc0 148 16 on on IN cord-269150-d1sgnxc0 148 17 this this DT cord-269150-d1sgnxc0 148 18 domain domain NN cord-269150-d1sgnxc0 148 19 indicated indicate VBD cord-269150-d1sgnxc0 148 20 three three CD cord-269150-d1sgnxc0 148 21 amino amino NN cord-269150-d1sgnxc0 148 22 acids acid NNS cord-269150-d1sgnxc0 148 23 at at IN cord-269150-d1sgnxc0 148 24 its -PRON- PRP$ cord-269150-d1sgnxc0 148 25 active active JJ cord-269150-d1sgnxc0 148 26 site site NN cord-269150-d1sgnxc0 148 27 , , , cord-269150-d1sgnxc0 148 28 which which WDT cord-269150-d1sgnxc0 148 29 interact interact VBP cord-269150-d1sgnxc0 148 30 with with IN cord-269150-d1sgnxc0 148 31 nucleic nucleic JJ cord-269150-d1sgnxc0 148 32 acid acid NN cord-269150-d1sgnxc0 148 33 residues residue NNS cord-269150-d1sgnxc0 148 34 via via IN cord-269150-d1sgnxc0 148 35 their -PRON- PRP$ cord-269150-d1sgnxc0 148 36 aromatic aromatic JJ cord-269150-d1sgnxc0 148 37 and and CC cord-269150-d1sgnxc0 148 38 hydrophobic hydrophobic JJ cord-269150-d1sgnxc0 148 39 side side NN cord-269150-d1sgnxc0 148 40 chains chain NNS cord-269150-d1sgnxc0 148 41 . . . cord-269150-d1sgnxc0 149 1 For for IN cord-269150-d1sgnxc0 149 2 MADP1 MADP1 NNP cord-269150-d1sgnxc0 149 3 , , , cord-269150-d1sgnxc0 149 4 the the DT cord-269150-d1sgnxc0 149 5 identified identify VBN cord-269150-d1sgnxc0 149 6 active active JJ cord-269150-d1sgnxc0 149 7 site site NN cord-269150-d1sgnxc0 149 8 was be VBD cord-269150-d1sgnxc0 149 9 composed compose VBN cord-269150-d1sgnxc0 149 10 of of IN cord-269150-d1sgnxc0 149 11 phenylalanine phenylalanine NN cord-269150-d1sgnxc0 149 12 55 55 CD cord-269150-d1sgnxc0 149 13 and and CC cord-269150-d1sgnxc0 149 14 valine valine NN cord-269150-d1sgnxc0 149 15 53 53 CD cord-269150-d1sgnxc0 149 16 , , , cord-269150-d1sgnxc0 149 17 respectively respectively RB cord-269150-d1sgnxc0 149 18 , , , cord-269150-d1sgnxc0 149 19 while while IN cord-269150-d1sgnxc0 149 20 tyrosine tyrosine NN cord-269150-d1sgnxc0 149 21 13 13 CD cord-269150-d1sgnxc0 149 22 may may MD cord-269150-d1sgnxc0 149 23 have have VB cord-269150-d1sgnxc0 149 24 acted act VBN cord-269150-d1sgnxc0 149 25 as as IN cord-269150-d1sgnxc0 149 26 an an DT cord-269150-d1sgnxc0 149 27 anchor anchor NN cord-269150-d1sgnxc0 149 28 for for IN cord-269150-d1sgnxc0 149 29 the the DT cord-269150-d1sgnxc0 149 30 phosphate phosphate NN cord-269150-d1sgnxc0 149 31 backbone backbone NN cord-269150-d1sgnxc0 149 32 via via IN cord-269150-d1sgnxc0 149 33 electrostatic electrostatic JJ cord-269150-d1sgnxc0 149 34 interactions interaction NNS cord-269150-d1sgnxc0 149 35 . . . cord-269150-d1sgnxc0 150 1 Hence hence RB cord-269150-d1sgnxc0 150 2 , , , cord-269150-d1sgnxc0 150 3 three three CD cord-269150-d1sgnxc0 150 4 mutants mutant NNS cord-269150-d1sgnxc0 150 5 with with IN cord-269150-d1sgnxc0 150 6 either either CC cord-269150-d1sgnxc0 150 7 a a DT cord-269150-d1sgnxc0 150 8 single single JJ cord-269150-d1sgnxc0 150 9 alanine alanine JJ cord-269150-d1sgnxc0 150 10 substitution substitution NN cord-269150-d1sgnxc0 150 11 for for IN cord-269150-d1sgnxc0 150 12 tyrosine tyrosine NN cord-269150-d1sgnxc0 150 13 13 13 CD cord-269150-d1sgnxc0 150 14 ( ( -LRB- cord-269150-d1sgnxc0 150 15 Y13A Y13A NNP cord-269150-d1sgnxc0 150 16 ) ) -RRB- cord-269150-d1sgnxc0 150 17 , , , cord-269150-d1sgnxc0 150 18 a a DT cord-269150-d1sgnxc0 150 19 double double JJ cord-269150-d1sgnxc0 150 20 alanine alanine JJ cord-269150-d1sgnxc0 150 21 substitution substitution NN cord-269150-d1sgnxc0 150 22 for for IN cord-269150-d1sgnxc0 150 23 valine valine NN cord-269150-d1sgnxc0 150 24 53 53 CD cord-269150-d1sgnxc0 150 25 and and CC cord-269150-d1sgnxc0 150 26 phenylalanine phenylalanine NN cord-269150-d1sgnxc0 150 27 55 55 CD cord-269150-d1sgnxc0 150 28 ( ( -LRB- cord-269150-d1sgnxc0 150 29 V53F55A v53f55a UH cord-269150-d1sgnxc0 150 30 ) ) -RRB- cord-269150-d1sgnxc0 150 31 or or CC cord-269150-d1sgnxc0 150 32 triple triple JJ cord-269150-d1sgnxc0 150 33 alanine alanine JJ cord-269150-d1sgnxc0 150 34 substitutions substitution NNS cord-269150-d1sgnxc0 150 35 for for IN cord-269150-d1sgnxc0 150 36 all all DT cord-269150-d1sgnxc0 150 37 three three CD cord-269150-d1sgnxc0 150 38 residues residue NNS cord-269150-d1sgnxc0 150 39 ( ( -LRB- cord-269150-d1sgnxc0 150 40 YVF YVF NNP cord-269150-d1sgnxc0 150 41 ) ) -RRB- cord-269150-d1sgnxc0 150 42 , , , cord-269150-d1sgnxc0 150 43 were be VBD cord-269150-d1sgnxc0 150 44 constructed construct VBN cord-269150-d1sgnxc0 150 45 ( ( -LRB- cord-269150-d1sgnxc0 150 46 Figure figure NN cord-269150-d1sgnxc0 150 47 4A 4a CD cord-269150-d1sgnxc0 150 48 ) ) -RRB- cord-269150-d1sgnxc0 150 49 . . . cord-269150-d1sgnxc0 151 1 These these DT cord-269150-d1sgnxc0 151 2 three three CD cord-269150-d1sgnxc0 151 3 mutants mutant NNS cord-269150-d1sgnxc0 151 4 were be VBD cord-269150-d1sgnxc0 151 5 over over RB cord-269150-d1sgnxc0 151 6 - - HYPH cord-269150-d1sgnxc0 151 7 expressed express VBN cord-269150-d1sgnxc0 151 8 in in IN cord-269150-d1sgnxc0 151 9 H1299 H1299 NNP cord-269150-d1sgnxc0 151 10 cells cell NNS cord-269150-d1sgnxc0 151 11 as as IN cord-269150-d1sgnxc0 151 12 Flag flag NN cord-269150-d1sgnxc0 151 13 - - HYPH cord-269150-d1sgnxc0 151 14 tagged tag VBN cord-269150-d1sgnxc0 151 15 proteins protein NNS cord-269150-d1sgnxc0 151 16 , , , cord-269150-d1sgnxc0 151 17 and and CC cord-269150-d1sgnxc0 151 18 the the DT cord-269150-d1sgnxc0 151 19 lysates lysate NNS cord-269150-d1sgnxc0 151 20 were be VBD cord-269150-d1sgnxc0 151 21 assessed assess VBN cord-269150-d1sgnxc0 151 22 for for IN cord-269150-d1sgnxc0 151 23 their -PRON- PRP$ cord-269150-d1sgnxc0 151 24 respective respective JJ cord-269150-d1sgnxc0 151 25 RNA rna NN cord-269150-d1sgnxc0 151 26 - - HYPH cord-269150-d1sgnxc0 151 27 binding bind VBG cord-269150-d1sgnxc0 151 28 affinities affinity NNS cord-269150-d1sgnxc0 151 29 for for IN cord-269150-d1sgnxc0 151 30 full full JJ cord-269150-d1sgnxc0 151 31 - - HYPH cord-269150-d1sgnxc0 151 32 length length NN cord-269150-d1sgnxc0 151 33 IBV IBV NNP cord-269150-d1sgnxc0 151 34 5 5 CD cord-269150-d1sgnxc0 151 35 0 0 CD cord-269150-d1sgnxc0 151 36 -UTR -UTR : cord-269150-d1sgnxc0 151 37 ( ( -LRB- cord-269150-d1sgnxc0 151 38 Figure figure NN cord-269150-d1sgnxc0 151 39 4C 4c CD cord-269150-d1sgnxc0 151 40 ) ) -RRB- cord-269150-d1sgnxc0 151 41 . . . cord-269150-d1sgnxc0 152 1 Interaction interaction NN cord-269150-d1sgnxc0 152 2 of of IN cord-269150-d1sgnxc0 152 3 deletion deletion NN cord-269150-d1sgnxc0 152 4 mutants mutant NNS cord-269150-d1sgnxc0 152 5 of of IN cord-269150-d1sgnxc0 152 6 MADP1 MADP1 NNP cord-269150-d1sgnxc0 152 7 with with IN cord-269150-d1sgnxc0 152 8 IBV IBV NNP cord-269150-d1sgnxc0 152 9 5 5 CD cord-269150-d1sgnxc0 152 10 0 0 CD cord-269150-d1sgnxc0 152 11 -UTR -utr NN cord-269150-d1sgnxc0 152 12 . . . cord-269150-d1sgnxc0 153 1 Cell cell NN cord-269150-d1sgnxc0 153 2 lysates lysate NNS cord-269150-d1sgnxc0 153 3 prepared prepare VBD cord-269150-d1sgnxc0 153 4 from from IN cord-269150-d1sgnxc0 153 5 H1299 H1299 NNP cord-269150-d1sgnxc0 153 6 cells cell NNS cord-269150-d1sgnxc0 153 7 over over RB cord-269150-d1sgnxc0 153 8 - - HYPH cord-269150-d1sgnxc0 153 9 expressing express VBG cord-269150-d1sgnxc0 153 10 Flag Flag NNP cord-269150-d1sgnxc0 153 11 - - HYPH cord-269150-d1sgnxc0 153 12 tagged tag VBN cord-269150-d1sgnxc0 153 13 wild wild JJ cord-269150-d1sgnxc0 153 14 - - HYPH cord-269150-d1sgnxc0 153 15 type type NN cord-269150-d1sgnxc0 153 16 MADP1 MADP1 NNP cord-269150-d1sgnxc0 153 17 or or CC cord-269150-d1sgnxc0 153 18 its -PRON- PRP$ cord-269150-d1sgnxc0 153 19 truncation truncation NN cord-269150-d1sgnxc0 153 20 mutants mutant NNS cord-269150-d1sgnxc0 153 21 were be VBD cord-269150-d1sgnxc0 153 22 used use VBN cord-269150-d1sgnxc0 153 23 for for IN cord-269150-d1sgnxc0 153 24 biotin biotin NN cord-269150-d1sgnxc0 153 25 - - HYPH cord-269150-d1sgnxc0 153 26 RNA rna NN cord-269150-d1sgnxc0 153 27 pull pull VB cord-269150-d1sgnxc0 153 28 - - HYPH cord-269150-d1sgnxc0 153 29 down down RP cord-269150-d1sgnxc0 153 30 assay assay NN cord-269150-d1sgnxc0 153 31 using use VBG cord-269150-d1sgnxc0 153 32 the the DT cord-269150-d1sgnxc0 153 33 full full JJ cord-269150-d1sgnxc0 153 34 - - HYPH cord-269150-d1sgnxc0 153 35 length length NN cord-269150-d1sgnxc0 153 36 IBV IBV NNP cord-269150-d1sgnxc0 153 37 5 5 CD cord-269150-d1sgnxc0 153 38 0 0 CD cord-269150-d1sgnxc0 153 39 -UTR -utr NN cord-269150-d1sgnxc0 153 40 . . . cord-269150-d1sgnxc0 154 1 Both both DT cord-269150-d1sgnxc0 154 2 the the DT cord-269150-d1sgnxc0 154 3 crude crude JJ cord-269150-d1sgnxc0 154 4 lysates lysate NNS cord-269150-d1sgnxc0 154 5 ( ( -LRB- cord-269150-d1sgnxc0 154 6 labeled label VBN cord-269150-d1sgnxc0 154 7 C C NNP cord-269150-d1sgnxc0 154 8 ) ) -RRB- cord-269150-d1sgnxc0 154 9 and and CC cord-269150-d1sgnxc0 154 10 protein protein NN cord-269150-d1sgnxc0 154 11 bound bind VBN cord-269150-d1sgnxc0 154 12 on on IN cord-269150-d1sgnxc0 154 13 the the DT cord-269150-d1sgnxc0 154 14 streptavidin streptavidin NNP cord-269150-d1sgnxc0 154 15 beads bead NNS cord-269150-d1sgnxc0 154 16 ( ( -LRB- cord-269150-d1sgnxc0 154 17 labeled label VBN cord-269150-d1sgnxc0 154 18 E e NN cord-269150-d1sgnxc0 154 19 ) ) -RRB- cord-269150-d1sgnxc0 154 20 were be VBD cord-269150-d1sgnxc0 154 21 resolved resolve VBN cord-269150-d1sgnxc0 154 22 by by IN cord-269150-d1sgnxc0 154 23 SDS SDS NNP cord-269150-d1sgnxc0 154 24 - - HYPH cord-269150-d1sgnxc0 154 25 PAGE PAGE NNP cord-269150-d1sgnxc0 154 26 and and CC cord-269150-d1sgnxc0 154 27 detected detect VBN cord-269150-d1sgnxc0 154 28 by by IN cord-269150-d1sgnxc0 154 29 Western western JJ cord-269150-d1sgnxc0 154 30 blot blot NN cord-269150-d1sgnxc0 154 31 with with IN cord-269150-d1sgnxc0 154 32 anti anti JJ cord-269150-d1sgnxc0 154 33 - - JJ cord-269150-d1sgnxc0 154 34 Flag flag JJ cord-269150-d1sgnxc0 154 35 antibody antibody NN cord-269150-d1sgnxc0 154 36 . . . cord-269150-d1sgnxc0 155 1 EGFP EGFP NNP cord-269150-d1sgnxc0 155 2 over over RB cord-269150-d1sgnxc0 155 3 - - HYPH cord-269150-d1sgnxc0 155 4 expressed express VBN cord-269150-d1sgnxc0 155 5 cell cell NN cord-269150-d1sgnxc0 155 6 lysate lysate NN cord-269150-d1sgnxc0 155 7 was be VBD cord-269150-d1sgnxc0 155 8 included include VBN cord-269150-d1sgnxc0 155 9 as as IN cord-269150-d1sgnxc0 155 10 a a DT cord-269150-d1sgnxc0 155 11 negative negative JJ cord-269150-d1sgnxc0 155 12 control control NN cord-269150-d1sgnxc0 155 13 . . . cord-269150-d1sgnxc0 156 1 ( ( -LRB- cord-269150-d1sgnxc0 156 2 C C NNP cord-269150-d1sgnxc0 156 3 ) ) -RRB- cord-269150-d1sgnxc0 156 4 Interaction Interaction NNP cord-269150-d1sgnxc0 156 5 of of IN cord-269150-d1sgnxc0 156 6 three three CD cord-269150-d1sgnxc0 156 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 156 8 mutant mutant JJ cord-269150-d1sgnxc0 156 9 constructs construct NNS cord-269150-d1sgnxc0 156 10 , , , cord-269150-d1sgnxc0 156 11 Y13A Y13A NNP cord-269150-d1sgnxc0 156 12 , , , cord-269150-d1sgnxc0 156 13 V53F55A V53F55A NNP cord-269150-d1sgnxc0 156 14 and and CC cord-269150-d1sgnxc0 156 15 YVF YVF NNP cord-269150-d1sgnxc0 156 16 , , , cord-269150-d1sgnxc0 156 17 with with IN cord-269150-d1sgnxc0 156 18 IBV IBV NNP cord-269150-d1sgnxc0 156 19 5 5 CD cord-269150-d1sgnxc0 156 20 0 0 CD cord-269150-d1sgnxc0 156 21 -UTR -utr NN cord-269150-d1sgnxc0 156 22 . . . cord-269150-d1sgnxc0 157 1 The the DT cord-269150-d1sgnxc0 157 2 three three CD cord-269150-d1sgnxc0 157 3 full full JJ cord-269150-d1sgnxc0 157 4 - - HYPH cord-269150-d1sgnxc0 157 5 length length NN cord-269150-d1sgnxc0 157 6 MADP1 MADP1 NNP cord-269150-d1sgnxc0 157 7 constructs construct NNS cord-269150-d1sgnxc0 157 8 with with IN cord-269150-d1sgnxc0 157 9 amino amino NN cord-269150-d1sgnxc0 157 10 acid acid NN cord-269150-d1sgnxc0 157 11 mutations mutation NNS cord-269150-d1sgnxc0 157 12 at at IN cord-269150-d1sgnxc0 157 13 the the DT cord-269150-d1sgnxc0 157 14 predicted predict VBN cord-269150-d1sgnxc0 157 15 RNA RNA NNP cord-269150-d1sgnxc0 157 16 - - HYPH cord-269150-d1sgnxc0 157 17 binding bind VBG cord-269150-d1sgnxc0 157 18 sites site NNS cord-269150-d1sgnxc0 157 19 were be VBD cord-269150-d1sgnxc0 157 20 transfected transfecte VBN cord-269150-d1sgnxc0 157 21 into into IN cord-269150-d1sgnxc0 157 22 H1299 H1299 NNP cord-269150-d1sgnxc0 157 23 cells cell NNS cord-269150-d1sgnxc0 157 24 and and CC cord-269150-d1sgnxc0 157 25 used use VBN cord-269150-d1sgnxc0 157 26 in in IN cord-269150-d1sgnxc0 157 27 a a DT cord-269150-d1sgnxc0 157 28 biotin biotin NN cord-269150-d1sgnxc0 157 29 - - HYPH cord-269150-d1sgnxc0 157 30 RNA rna NN cord-269150-d1sgnxc0 157 31 pull pull VB cord-269150-d1sgnxc0 157 32 - - HYPH cord-269150-d1sgnxc0 157 33 down down RP cord-269150-d1sgnxc0 157 34 assay assay NN cord-269150-d1sgnxc0 157 35 with with IN cord-269150-d1sgnxc0 157 36 the the DT cord-269150-d1sgnxc0 157 37 full full JJ cord-269150-d1sgnxc0 157 38 - - HYPH cord-269150-d1sgnxc0 157 39 length length NN cord-269150-d1sgnxc0 157 40 IBV IBV NNP cord-269150-d1sgnxc0 157 41 5 5 CD cord-269150-d1sgnxc0 157 42 0 0 CD cord-269150-d1sgnxc0 157 43 -UTR -utr NN cord-269150-d1sgnxc0 157 44 . . . cord-269150-d1sgnxc0 158 1 All all DT cord-269150-d1sgnxc0 158 2 mutants mutant NNS cord-269150-d1sgnxc0 158 3 resulted result VBD cord-269150-d1sgnxc0 158 4 in in IN cord-269150-d1sgnxc0 158 5 a a DT cord-269150-d1sgnxc0 158 6 reduction reduction NN cord-269150-d1sgnxc0 158 7 in in IN cord-269150-d1sgnxc0 158 8 RNA rna NN cord-269150-d1sgnxc0 158 9 - - HYPH cord-269150-d1sgnxc0 158 10 binding bind VBG cord-269150-d1sgnxc0 158 11 affinity affinity NN cord-269150-d1sgnxc0 158 12 for for IN cord-269150-d1sgnxc0 158 13 the the DT cord-269150-d1sgnxc0 158 14 biotinylated biotinylate VBN cord-269150-d1sgnxc0 158 15 RNA RNA NNP cord-269150-d1sgnxc0 158 16 molecule molecule NN cord-269150-d1sgnxc0 158 17 and and CC cord-269150-d1sgnxc0 158 18 the the DT cord-269150-d1sgnxc0 158 19 reduction reduction NN cord-269150-d1sgnxc0 158 20 was be VBD cord-269150-d1sgnxc0 158 21 most most RBS cord-269150-d1sgnxc0 158 22 dramatic dramatic JJ cord-269150-d1sgnxc0 158 23 for for IN cord-269150-d1sgnxc0 158 24 triple triple JJ cord-269150-d1sgnxc0 158 25 residue residue NN cord-269150-d1sgnxc0 158 26 mutant mutant NN cord-269150-d1sgnxc0 158 27 YVF YVF NNP cord-269150-d1sgnxc0 158 28 ( ( -LRB- cord-269150-d1sgnxc0 158 29 Figure figure NN cord-269150-d1sgnxc0 158 30 4C 4c CD cord-269150-d1sgnxc0 158 31 ) ) -RRB- cord-269150-d1sgnxc0 158 32 , , , cord-269150-d1sgnxc0 158 33 implying imply VBG cord-269150-d1sgnxc0 158 34 cooperative cooperative JJ cord-269150-d1sgnxc0 158 35 binding binding NN cord-269150-d1sgnxc0 158 36 demonstrated demonstrate VBN cord-269150-d1sgnxc0 158 37 by by IN cord-269150-d1sgnxc0 158 38 the the DT cord-269150-d1sgnxc0 158 39 three three CD cord-269150-d1sgnxc0 158 40 residues residue NNS cord-269150-d1sgnxc0 158 41 . . . cord-269150-d1sgnxc0 159 1 This this DT cord-269150-d1sgnxc0 159 2 finding finding NN cord-269150-d1sgnxc0 159 3 confirms confirm VBZ cord-269150-d1sgnxc0 159 4 that that IN cord-269150-d1sgnxc0 159 5 the the DT cord-269150-d1sgnxc0 159 6 MADP1 MADP1 NNP cord-269150-d1sgnxc0 159 7 RRM RRM NNP cord-269150-d1sgnxc0 159 8 is be VBZ cord-269150-d1sgnxc0 159 9 involved involve VBN cord-269150-d1sgnxc0 159 10 in in IN cord-269150-d1sgnxc0 159 11 the the DT cord-269150-d1sgnxc0 159 12 interaction interaction NN cord-269150-d1sgnxc0 159 13 with with IN cord-269150-d1sgnxc0 159 14 IBV IBV NNP cord-269150-d1sgnxc0 159 15 5 5 CD cord-269150-d1sgnxc0 159 16 0 0 CD cord-269150-d1sgnxc0 159 17 -UTR -utr NN cord-269150-d1sgnxc0 159 18 . . . cord-269150-d1sgnxc0 160 1 To to TO cord-269150-d1sgnxc0 160 2 demonstrate demonstrate VB cord-269150-d1sgnxc0 160 3 the the DT cord-269150-d1sgnxc0 160 4 significance significance NN cord-269150-d1sgnxc0 160 5 of of IN cord-269150-d1sgnxc0 160 6 the the DT cord-269150-d1sgnxc0 160 7 interaction interaction NN cord-269150-d1sgnxc0 160 8 between between IN cord-269150-d1sgnxc0 160 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 160 10 and and CC cord-269150-d1sgnxc0 160 11 IBV IBV NNP cord-269150-d1sgnxc0 160 12 5 5 CD cord-269150-d1sgnxc0 160 13 0 0 CD cord-269150-d1sgnxc0 160 14 -UTR -utr NN cord-269150-d1sgnxc0 160 15 , , , cord-269150-d1sgnxc0 160 16 an an DT cord-269150-d1sgnxc0 160 17 siRNA siRNA NNP cord-269150-d1sgnxc0 160 18 duplex duplex NN cord-269150-d1sgnxc0 160 19 designed design VBN cord-269150-d1sgnxc0 160 20 to to TO cord-269150-d1sgnxc0 160 21 silence silence VB cord-269150-d1sgnxc0 160 22 MADP1 MADP1 NNP cord-269150-d1sgnxc0 160 23 expression expression NN cord-269150-d1sgnxc0 160 24 ( ( -LRB- cord-269150-d1sgnxc0 160 25 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 160 26 ) ) -RRB- cord-269150-d1sgnxc0 160 27 and and CC cord-269150-d1sgnxc0 160 28 a a DT cord-269150-d1sgnxc0 160 29 negative negative JJ cord-269150-d1sgnxc0 160 30 control control NN cord-269150-d1sgnxc0 160 31 siRNA sirna NN cord-269150-d1sgnxc0 160 32 targeting target VBG cord-269150-d1sgnxc0 160 33 EGFP EGFP NNP cord-269150-d1sgnxc0 160 34 protein protein NN cord-269150-d1sgnxc0 160 35 ( ( -LRB- cord-269150-d1sgnxc0 160 36 siEGFP siegfp UH cord-269150-d1sgnxc0 160 37 ) ) -RRB- cord-269150-d1sgnxc0 160 38 were be VBD cord-269150-d1sgnxc0 160 39 Figure figure NN cord-269150-d1sgnxc0 160 40 5A 5a CD cord-269150-d1sgnxc0 160 41 ) ) -RRB- cord-269150-d1sgnxc0 160 42 . . . cord-269150-d1sgnxc0 161 1 Densitometric Densitometric NNP cord-269150-d1sgnxc0 161 2 analyses analysis NNS cord-269150-d1sgnxc0 161 3 identified identify VBD cord-269150-d1sgnxc0 161 4 a a DT cord-269150-d1sgnxc0 161 5 reduction reduction NN cord-269150-d1sgnxc0 161 6 between between IN cord-269150-d1sgnxc0 161 7 40 40 CD cord-269150-d1sgnxc0 161 8 % % NN cord-269150-d1sgnxc0 161 9 and and CC cord-269150-d1sgnxc0 161 10 80 80 CD cord-269150-d1sgnxc0 161 11 % % NN cord-269150-d1sgnxc0 161 12 of of IN cord-269150-d1sgnxc0 161 13 MADP1 MADP1 NNP cord-269150-d1sgnxc0 161 14 mRNA mrna NN cord-269150-d1sgnxc0 161 15 was be VBD cord-269150-d1sgnxc0 161 16 achieved achieve VBN cord-269150-d1sgnxc0 161 17 by by IN cord-269150-d1sgnxc0 161 18 this this DT cord-269150-d1sgnxc0 161 19 siRNA sirna NN cord-269150-d1sgnxc0 161 20 which which WDT cord-269150-d1sgnxc0 161 21 resulted result VBD cord-269150-d1sgnxc0 161 22 in in IN cord-269150-d1sgnxc0 161 23 a a DT cord-269150-d1sgnxc0 161 24 reduction reduction NN cord-269150-d1sgnxc0 161 25 between between IN cord-269150-d1sgnxc0 161 26 70 70 CD cord-269150-d1sgnxc0 161 27 % % NN cord-269150-d1sgnxc0 161 28 and and CC cord-269150-d1sgnxc0 161 29 90 90 CD cord-269150-d1sgnxc0 161 30 % % NN cord-269150-d1sgnxc0 161 31 of of IN cord-269150-d1sgnxc0 161 32 negative negative JJ cord-269150-d1sgnxc0 161 33 stranded strand VBN cord-269150-d1sgnxc0 161 34 genomic genomic JJ cord-269150-d1sgnxc0 161 35 viral viral JJ cord-269150-d1sgnxc0 161 36 RNA RNA NNP cord-269150-d1sgnxc0 161 37 , , , cord-269150-d1sgnxc0 161 38 40 40 CD cord-269150-d1sgnxc0 161 39 - - SYM cord-269150-d1sgnxc0 161 40 80 80 CD cord-269150-d1sgnxc0 161 41 % % NN cord-269150-d1sgnxc0 161 42 of of IN cord-269150-d1sgnxc0 161 43 negative negative JJ cord-269150-d1sgnxc0 161 44 stranded strand VBN cord-269150-d1sgnxc0 161 45 subgenomic subgenomic JJ cord-269150-d1sgnxc0 161 46 viral viral NNP cord-269150-d1sgnxc0 161 47 RNA RNA NNP cord-269150-d1sgnxc0 161 48 and and CC cord-269150-d1sgnxc0 161 49 50 50 CD cord-269150-d1sgnxc0 161 50 - - SYM cord-269150-d1sgnxc0 161 51 90 90 CD cord-269150-d1sgnxc0 161 52 % % NN cord-269150-d1sgnxc0 161 53 of of IN cord-269150-d1sgnxc0 161 54 positive positive JJ cord-269150-d1sgnxc0 161 55 stranded strand VBN cord-269150-d1sgnxc0 161 56 subgenomic subgenomic JJ cord-269150-d1sgnxc0 161 57 viral viral JJ cord-269150-d1sgnxc0 161 58 RNA RNA NNP cord-269150-d1sgnxc0 161 59 . . . cord-269150-d1sgnxc0 162 1 Western western JJ cord-269150-d1sgnxc0 162 2 blot blot NN cord-269150-d1sgnxc0 162 3 analysis analysis NN cord-269150-d1sgnxc0 162 4 also also RB cord-269150-d1sgnxc0 162 5 noted note VBD cord-269150-d1sgnxc0 162 6 a a DT cord-269150-d1sgnxc0 162 7 reduction reduction NN cord-269150-d1sgnxc0 162 8 in in IN cord-269150-d1sgnxc0 162 9 the the DT cord-269150-d1sgnxc0 162 10 expression expression NN cord-269150-d1sgnxc0 162 11 of of IN cord-269150-d1sgnxc0 162 12 viral viral JJ cord-269150-d1sgnxc0 162 13 structural structural JJ cord-269150-d1sgnxc0 162 14 genes gene NNS cord-269150-d1sgnxc0 162 15 , , , cord-269150-d1sgnxc0 162 16 between between IN cord-269150-d1sgnxc0 162 17 50 50 CD cord-269150-d1sgnxc0 162 18 % % NN cord-269150-d1sgnxc0 162 19 and and CC cord-269150-d1sgnxc0 162 20 90 90 CD cord-269150-d1sgnxc0 162 21 % % NN cord-269150-d1sgnxc0 162 22 reduction reduction NN cord-269150-d1sgnxc0 162 23 for for IN cord-269150-d1sgnxc0 162 24 S S NNP cord-269150-d1sgnxc0 162 25 and and CC cord-269150-d1sgnxc0 162 26 N n CD cord-269150-d1sgnxc0 162 27 proteins protein NNS cord-269150-d1sgnxc0 162 28 , , , cord-269150-d1sgnxc0 162 29 with with IN cord-269150-d1sgnxc0 162 30 a a DT cord-269150-d1sgnxc0 162 31 reduction reduction NN cord-269150-d1sgnxc0 162 32 between between IN cord-269150-d1sgnxc0 162 33 40 40 CD cord-269150-d1sgnxc0 162 34 % % NN cord-269150-d1sgnxc0 162 35 and and CC cord-269150-d1sgnxc0 162 36 80 80 CD cord-269150-d1sgnxc0 162 37 % % NN cord-269150-d1sgnxc0 162 38 of of IN cord-269150-d1sgnxc0 162 39 MADP1 MADP1 NNP cord-269150-d1sgnxc0 162 40 protein protein NN cord-269150-d1sgnxc0 162 41 ( ( -LRB- cord-269150-d1sgnxc0 162 42 Figure figure NN cord-269150-d1sgnxc0 162 43 5B 5b NN cord-269150-d1sgnxc0 162 44 ) ) -RRB- cord-269150-d1sgnxc0 162 45 . . . cord-269150-d1sgnxc0 163 1 Virus virus NN cord-269150-d1sgnxc0 163 2 titers titer NNS cord-269150-d1sgnxc0 163 3 as as IN cord-269150-d1sgnxc0 163 4 represented represent VBN cord-269150-d1sgnxc0 163 5 by by IN cord-269150-d1sgnxc0 163 6 the the DT cord-269150-d1sgnxc0 163 7 tissue tissue NN cord-269150-d1sgnxc0 163 8 culture culture NN cord-269150-d1sgnxc0 163 9 infectious infectious JJ cord-269150-d1sgnxc0 163 10 dose dose NN cord-269150-d1sgnxc0 163 11 ( ( -LRB- cord-269150-d1sgnxc0 163 12 Log10 Log10 NNP cord-269150-d1sgnxc0 163 13 TCID50 TCID50 NNP cord-269150-d1sgnxc0 163 14 ) ) -RRB- cord-269150-d1sgnxc0 163 15 at at IN cord-269150-d1sgnxc0 163 16 each each DT cord-269150-d1sgnxc0 163 17 infection infection NN cord-269150-d1sgnxc0 163 18 time time NN cord-269150-d1sgnxc0 163 19 point point NN cord-269150-d1sgnxc0 163 20 was be VBD cord-269150-d1sgnxc0 163 21 reduced reduce VBN cord-269150-d1sgnxc0 163 22 by by IN cord-269150-d1sgnxc0 163 23 a a DT cord-269150-d1sgnxc0 163 24 minimum minimum NN cord-269150-d1sgnxc0 163 25 of of IN cord-269150-d1sgnxc0 163 26 3-fold 3-fold CD cord-269150-d1sgnxc0 163 27 and and CC cord-269150-d1sgnxc0 163 28 up up IN cord-269150-d1sgnxc0 163 29 to to IN cord-269150-d1sgnxc0 163 30 10-fold 10-fold CD cord-269150-d1sgnxc0 163 31 compared compare VBN cord-269150-d1sgnxc0 163 32 to to IN cord-269150-d1sgnxc0 163 33 siEGFP siEGFP NNP cord-269150-d1sgnxc0 163 34 - - HYPH cord-269150-d1sgnxc0 163 35 transfected transfecte VBN cord-269150-d1sgnxc0 163 36 cells cell NNS cord-269150-d1sgnxc0 163 37 beyond beyond IN cord-269150-d1sgnxc0 163 38 4 4 CD cord-269150-d1sgnxc0 163 39 h h NN cord-269150-d1sgnxc0 163 40 of of IN cord-269150-d1sgnxc0 163 41 infection infection NN cord-269150-d1sgnxc0 163 42 ( ( -LRB- cord-269150-d1sgnxc0 163 43 Figure figure NN cord-269150-d1sgnxc0 163 44 5C 5c CD cord-269150-d1sgnxc0 163 45 ) ) -RRB- cord-269150-d1sgnxc0 163 46 . . . cord-269150-d1sgnxc0 164 1 Firefly firefly NN cord-269150-d1sgnxc0 164 2 luciferase luciferase NN cord-269150-d1sgnxc0 164 3 activity activity NN cord-269150-d1sgnxc0 164 4 of of IN cord-269150-d1sgnxc0 164 5 cell cell NN cord-269150-d1sgnxc0 164 6 lysates lysate NNS cord-269150-d1sgnxc0 164 7 harvested harvest VBN cord-269150-d1sgnxc0 164 8 at at IN cord-269150-d1sgnxc0 164 9 different different JJ cord-269150-d1sgnxc0 164 10 time time NN cord-269150-d1sgnxc0 164 11 points point NNS cord-269150-d1sgnxc0 164 12 showed show VBD cord-269150-d1sgnxc0 164 13 a a DT cord-269150-d1sgnxc0 164 14 minimum minimum NN cord-269150-d1sgnxc0 164 15 of of IN cord-269150-d1sgnxc0 164 16 50 50 CD cord-269150-d1sgnxc0 164 17 % % NN cord-269150-d1sgnxc0 164 18 reduction reduction NN cord-269150-d1sgnxc0 164 19 upon upon IN cord-269150-d1sgnxc0 164 20 the the DT cord-269150-d1sgnxc0 164 21 silencing silencing NN cord-269150-d1sgnxc0 164 22 of of IN cord-269150-d1sgnxc0 164 23 MADP1 MADP1 NNP cord-269150-d1sgnxc0 164 24 , , , cord-269150-d1sgnxc0 164 25 which which WDT cord-269150-d1sgnxc0 164 26 supports support VBZ cord-269150-d1sgnxc0 164 27 further further RB cord-269150-d1sgnxc0 164 28 the the DT cord-269150-d1sgnxc0 164 29 observation observation NN cord-269150-d1sgnxc0 164 30 that that IN cord-269150-d1sgnxc0 164 31 the the DT cord-269150-d1sgnxc0 164 32 total total JJ cord-269150-d1sgnxc0 164 33 viral viral JJ cord-269150-d1sgnxc0 164 34 protein protein NN cord-269150-d1sgnxc0 164 35 production production NN cord-269150-d1sgnxc0 164 36 was be VBD cord-269150-d1sgnxc0 164 37 much much RB cord-269150-d1sgnxc0 164 38 reduced reduce VBN cord-269150-d1sgnxc0 164 39 ( ( -LRB- cord-269150-d1sgnxc0 164 40 Figure figure NN cord-269150-d1sgnxc0 164 41 5D 5d CD cord-269150-d1sgnxc0 164 42 ) ) -RRB- cord-269150-d1sgnxc0 164 43 . . . cord-269150-d1sgnxc0 165 1 To to TO cord-269150-d1sgnxc0 165 2 eliminate eliminate VB cord-269150-d1sgnxc0 165 3 the the DT cord-269150-d1sgnxc0 165 4 possibility possibility NN cord-269150-d1sgnxc0 165 5 that that IN cord-269150-d1sgnxc0 165 6 the the DT cord-269150-d1sgnxc0 165 7 phenotype phenotype NN cord-269150-d1sgnxc0 165 8 observed observe VBN cord-269150-d1sgnxc0 165 9 in in IN cord-269150-d1sgnxc0 165 10 MADP1-silenced MADP1-silenced NNP cord-269150-d1sgnxc0 165 11 cells cell NNS cord-269150-d1sgnxc0 165 12 during during IN cord-269150-d1sgnxc0 165 13 IBV IBV NNP cord-269150-d1sgnxc0 165 14 infection infection NN cord-269150-d1sgnxc0 165 15 was be VBD cord-269150-d1sgnxc0 165 16 due due JJ cord-269150-d1sgnxc0 165 17 to to IN cord-269150-d1sgnxc0 165 18 an an DT cord-269150-d1sgnxc0 165 19 off off JJ cord-269150-d1sgnxc0 165 20 - - HYPH cord-269150-d1sgnxc0 165 21 target target NN cord-269150-d1sgnxc0 165 22 effect effect NN cord-269150-d1sgnxc0 165 23 of of IN cord-269150-d1sgnxc0 165 24 the the DT cord-269150-d1sgnxc0 165 25 siRNA siRNA NNP cord-269150-d1sgnxc0 165 26 duplex duplex NNP cord-269150-d1sgnxc0 165 27 used use VBN cord-269150-d1sgnxc0 165 28 , , , cord-269150-d1sgnxc0 165 29 four four CD cord-269150-d1sgnxc0 165 30 additional additional JJ cord-269150-d1sgnxc0 165 31 siRNA siRNA NNP cord-269150-d1sgnxc0 165 32 duplexes duplex NNS cord-269150-d1sgnxc0 165 33 targeting target VBG cord-269150-d1sgnxc0 165 34 different different JJ cord-269150-d1sgnxc0 165 35 regions region NNS cord-269150-d1sgnxc0 165 36 of of IN cord-269150-d1sgnxc0 165 37 MADP1 MADP1 NNP cord-269150-d1sgnxc0 165 38 were be VBD cord-269150-d1sgnxc0 165 39 used use VBN cord-269150-d1sgnxc0 165 40 in in IN cord-269150-d1sgnxc0 165 41 various various JJ cord-269150-d1sgnxc0 165 42 combinations combination NNS cord-269150-d1sgnxc0 165 43 with with IN cord-269150-d1sgnxc0 165 44 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 165 45 ( ( -LRB- cord-269150-d1sgnxc0 165 46 Figure figure NN cord-269150-d1sgnxc0 165 47 6 6 CD cord-269150-d1sgnxc0 165 48 ) ) -RRB- cord-269150-d1sgnxc0 165 49 to to TO cord-269150-d1sgnxc0 165 50 check check VB cord-269150-d1sgnxc0 165 51 their -PRON- PRP$ cord-269150-d1sgnxc0 165 52 effect effect NN cord-269150-d1sgnxc0 165 53 on on IN cord-269150-d1sgnxc0 165 54 IBV IBV NNP cord-269150-d1sgnxc0 165 55 infection infection NN cord-269150-d1sgnxc0 165 56 , , , cord-269150-d1sgnxc0 165 57 as as IN cord-269150-d1sgnxc0 165 58 illustrated illustrate VBN cord-269150-d1sgnxc0 165 59 by by IN cord-269150-d1sgnxc0 165 60 the the DT cord-269150-d1sgnxc0 165 61 expression expression NN cord-269150-d1sgnxc0 165 62 of of IN cord-269150-d1sgnxc0 165 63 the the DT cord-269150-d1sgnxc0 165 64 luciferase luciferase NN cord-269150-d1sgnxc0 165 65 gene gene NN cord-269150-d1sgnxc0 165 66 ( ( -LRB- cord-269150-d1sgnxc0 165 67 Figure Figure NNP cord-269150-d1sgnxc0 165 68 6B 6b NN cord-269150-d1sgnxc0 165 69 ) ) -RRB- cord-269150-d1sgnxc0 165 70 . . . cord-269150-d1sgnxc0 166 1 All all DT cord-269150-d1sgnxc0 166 2 six six CD cord-269150-d1sgnxc0 166 3 combinations combination NNS cord-269150-d1sgnxc0 166 4 of of IN cord-269150-d1sgnxc0 166 5 five five CD cord-269150-d1sgnxc0 166 6 different different JJ cord-269150-d1sgnxc0 166 7 siRNA siRNA NNP cord-269150-d1sgnxc0 166 8 duplexes duplex NNS cord-269150-d1sgnxc0 166 9 resulted result VBD cord-269150-d1sgnxc0 166 10 in in IN cord-269150-d1sgnxc0 166 11 a a DT cord-269150-d1sgnxc0 166 12 reduction reduction NN cord-269150-d1sgnxc0 166 13 in in IN cord-269150-d1sgnxc0 166 14 the the DT cord-269150-d1sgnxc0 166 15 luciferase luciferase NN cord-269150-d1sgnxc0 166 16 activity activity NN cord-269150-d1sgnxc0 166 17 of of IN cord-269150-d1sgnxc0 166 18 the the DT cord-269150-d1sgnxc0 166 19 infected infected JJ cord-269150-d1sgnxc0 166 20 cells cell NNS cord-269150-d1sgnxc0 166 21 by by IN cord-269150-d1sgnxc0 166 22 either either CC cord-269150-d1sgnxc0 166 23 70 70 CD cord-269150-d1sgnxc0 166 24 % % NN cord-269150-d1sgnxc0 166 25 ( ( -LRB- cord-269150-d1sgnxc0 166 26 siCombi siCombi NNP cord-269150-d1sgnxc0 166 27 3 3 CD cord-269150-d1sgnxc0 166 28 and and CC cord-269150-d1sgnxc0 166 29 4 4 CD cord-269150-d1sgnxc0 166 30 ) ) -RRB- cord-269150-d1sgnxc0 166 31 , , , cord-269150-d1sgnxc0 166 32 without without IN cord-269150-d1sgnxc0 166 33 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 166 34 or or CC cord-269150-d1sgnxc0 166 35 more more JJR cord-269150-d1sgnxc0 166 36 than than IN cord-269150-d1sgnxc0 166 37 90 90 CD cord-269150-d1sgnxc0 166 38 % % NN cord-269150-d1sgnxc0 166 39 ( ( -LRB- cord-269150-d1sgnxc0 166 40 siCombi siCombi NNP cord-269150-d1sgnxc0 166 41 1 1 CD cord-269150-d1sgnxc0 166 42 , , , cord-269150-d1sgnxc0 166 43 2 2 CD cord-269150-d1sgnxc0 166 44 , , , cord-269150-d1sgnxc0 166 45 5 5 CD cord-269150-d1sgnxc0 166 46 and and CC cord-269150-d1sgnxc0 166 47 6 6 CD cord-269150-d1sgnxc0 166 48 ) ) -RRB- cord-269150-d1sgnxc0 166 49 with with IN cord-269150-d1sgnxc0 166 50 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 166 51 , , , cord-269150-d1sgnxc0 166 52 compared compare VBN cord-269150-d1sgnxc0 166 53 to to IN cord-269150-d1sgnxc0 166 54 negative negative JJ cord-269150-d1sgnxc0 166 55 control control NN cord-269150-d1sgnxc0 166 56 , , , cord-269150-d1sgnxc0 166 57 siEGFP siEGFP NNP cord-269150-d1sgnxc0 166 58 - - HYPH cord-269150-d1sgnxc0 166 59 transfected transfecte VBN cord-269150-d1sgnxc0 166 60 cells cell NNS cord-269150-d1sgnxc0 166 61 ( ( -LRB- cord-269150-d1sgnxc0 166 62 Figure figure NN cord-269150-d1sgnxc0 166 63 6B 6b NN cord-269150-d1sgnxc0 166 64 ) ) -RRB- cord-269150-d1sgnxc0 166 65 . . . cord-269150-d1sgnxc0 167 1 This this DT cord-269150-d1sgnxc0 167 2 implies imply VBZ cord-269150-d1sgnxc0 167 3 that that IN cord-269150-d1sgnxc0 167 4 , , , cord-269150-d1sgnxc0 167 5 in in IN cord-269150-d1sgnxc0 167 6 general general JJ cord-269150-d1sgnxc0 167 7 , , , cord-269150-d1sgnxc0 167 8 knocking knock VBG cord-269150-d1sgnxc0 167 9 down down RP cord-269150-d1sgnxc0 167 10 MADP1 MADP1 NNP cord-269150-d1sgnxc0 167 11 with with IN cord-269150-d1sgnxc0 167 12 any any DT cord-269150-d1sgnxc0 167 13 siRNA siRNA NNP cord-269150-d1sgnxc0 167 14 results result NNS cord-269150-d1sgnxc0 167 15 in in IN cord-269150-d1sgnxc0 167 16 a a DT cord-269150-d1sgnxc0 167 17 reduction reduction NN cord-269150-d1sgnxc0 167 18 of of IN cord-269150-d1sgnxc0 167 19 virus virus NN cord-269150-d1sgnxc0 167 20 infection infection NN cord-269150-d1sgnxc0 167 21 . . . cord-269150-d1sgnxc0 168 1 A a DT cord-269150-d1sgnxc0 168 2 stable stable JJ cord-269150-d1sgnxc0 168 3 cell cell NN cord-269150-d1sgnxc0 168 4 clone clone NN cord-269150-d1sgnxc0 168 5 expressing express VBG cord-269150-d1sgnxc0 168 6 short short JJ cord-269150-d1sgnxc0 168 7 hairpin hairpin NN cord-269150-d1sgnxc0 168 8 RNA RNA NNP cord-269150-d1sgnxc0 168 9 to to IN cord-269150-d1sgnxc0 168 10 MADP1 MADP1 NNP cord-269150-d1sgnxc0 168 11 ( ( -LRB- cord-269150-d1sgnxc0 168 12 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 168 13 ) ) -RRB- cord-269150-d1sgnxc0 168 14 was be VBD cord-269150-d1sgnxc0 168 15 selected select VBN cord-269150-d1sgnxc0 168 16 from from IN cord-269150-d1sgnxc0 168 17 H1299 H1299 NNP cord-269150-d1sgnxc0 168 18 cells cell NNS cord-269150-d1sgnxc0 168 19 and and CC cord-269150-d1sgnxc0 168 20 the the DT cord-269150-d1sgnxc0 168 21 madp1 madp1 NN cord-269150-d1sgnxc0 169 1 mRNA mRNA NNP cord-269150-d1sgnxc0 169 2 level level NN cord-269150-d1sgnxc0 169 3 was be VBD cord-269150-d1sgnxc0 169 4 confirmed confirm VBN cord-269150-d1sgnxc0 169 5 using use VBG cord-269150-d1sgnxc0 169 6 northern northern JJ cord-269150-d1sgnxc0 169 7 blot blot NN cord-269150-d1sgnxc0 169 8 ( ( -LRB- cord-269150-d1sgnxc0 169 9 Figure figure NN cord-269150-d1sgnxc0 169 10 7A 7a NN cord-269150-d1sgnxc0 169 11 ) ) -RRB- cord-269150-d1sgnxc0 169 12 . . . cord-269150-d1sgnxc0 170 1 The the DT cord-269150-d1sgnxc0 170 2 expression expression NN cord-269150-d1sgnxc0 170 3 of of IN cord-269150-d1sgnxc0 170 4 MADP1 MADP1 NNP cord-269150-d1sgnxc0 170 5 and and CC cord-269150-d1sgnxc0 170 6 the the DT cord-269150-d1sgnxc0 170 7 effect effect NN cord-269150-d1sgnxc0 170 8 of of IN cord-269150-d1sgnxc0 170 9 MADP1-knockdown MADP1-knockdown NNP cord-269150-d1sgnxc0 170 10 on on IN cord-269150-d1sgnxc0 170 11 IBV IBV NNP cord-269150-d1sgnxc0 170 12 infection infection NN cord-269150-d1sgnxc0 170 13 were be VBD cord-269150-d1sgnxc0 170 14 tested test VBN cord-269150-d1sgnxc0 170 15 by by IN cord-269150-d1sgnxc0 170 16 comparing compare VBG cord-269150-d1sgnxc0 170 17 with with IN cord-269150-d1sgnxc0 170 18 a a DT cord-269150-d1sgnxc0 170 19 G418-selected g418-selected JJ cord-269150-d1sgnxc0 170 20 cell cell NN cord-269150-d1sgnxc0 170 21 line line NN cord-269150-d1sgnxc0 170 22 without without IN cord-269150-d1sgnxc0 170 23 expression expression NN cord-269150-d1sgnxc0 170 24 of of IN cord-269150-d1sgnxc0 170 25 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 170 26 ( ( -LRB- cord-269150-d1sgnxc0 170 27 non non JJ cord-269150-d1sgnxc0 170 28 - - JJ cord-269150-d1sgnxc0 170 29 targeting targeting JJ cord-269150-d1sgnxc0 170 30 control control NN cord-269150-d1sgnxc0 170 31 , , , cord-269150-d1sgnxc0 170 32 shNC shNC NNP cord-269150-d1sgnxc0 170 33 ) ) -RRB- cord-269150-d1sgnxc0 170 34 . . . cord-269150-d1sgnxc0 171 1 The the DT cord-269150-d1sgnxc0 171 2 results result NNS cord-269150-d1sgnxc0 171 3 showed show VBD cord-269150-d1sgnxc0 171 4 that that IN cord-269150-d1sgnxc0 171 5 , , , cord-269150-d1sgnxc0 171 6 in in IN cord-269150-d1sgnxc0 171 7 general general JJ cord-269150-d1sgnxc0 171 8 , , , cord-269150-d1sgnxc0 171 9 silencing silence VBG cord-269150-d1sgnxc0 171 10 of of IN cord-269150-d1sgnxc0 171 11 MADP1 MADP1 NNP cord-269150-d1sgnxc0 171 12 with with IN cord-269150-d1sgnxc0 171 13 shRNA shrna NN cord-269150-d1sgnxc0 171 14 reduced reduce VBN cord-269150-d1sgnxc0 171 15 the the DT cord-269150-d1sgnxc0 171 16 amount amount NN cord-269150-d1sgnxc0 171 17 of of IN cord-269150-d1sgnxc0 171 18 viral viral JJ cord-269150-d1sgnxc0 171 19 mRNA mrna NN cord-269150-d1sgnxc0 171 20 production production NN cord-269150-d1sgnxc0 171 21 before before IN cord-269150-d1sgnxc0 171 22 16 16 CD cord-269150-d1sgnxc0 171 23 h h NN cord-269150-d1sgnxc0 171 24 post post NN cord-269150-d1sgnxc0 171 25 - - NN cord-269150-d1sgnxc0 171 26 infection infection JJ cord-269150-d1sgnxc0 171 27 ( ( -LRB- cord-269150-d1sgnxc0 171 28 Figure figure NN cord-269150-d1sgnxc0 171 29 7B 7b NN cord-269150-d1sgnxc0 171 30 ) ) -RRB- cord-269150-d1sgnxc0 171 31 . . . cord-269150-d1sgnxc0 172 1 The the DT cord-269150-d1sgnxc0 172 2 amount amount NN cord-269150-d1sgnxc0 172 3 of of IN cord-269150-d1sgnxc0 172 4 virus virus NN cord-269150-d1sgnxc0 172 5 mRNA mrna NN cord-269150-d1sgnxc0 172 6 is be VBZ cord-269150-d1sgnxc0 172 7 higher high JJR cord-269150-d1sgnxc0 172 8 in in IN cord-269150-d1sgnxc0 172 9 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 172 10 cells cell NNS cord-269150-d1sgnxc0 172 11 compared compare VBN cord-269150-d1sgnxc0 172 12 to to IN cord-269150-d1sgnxc0 172 13 shNC shnc NN cord-269150-d1sgnxc0 172 14 cells cell NNS cord-269150-d1sgnxc0 172 15 beyond beyond IN cord-269150-d1sgnxc0 172 16 16 16 CD cord-269150-d1sgnxc0 172 17 h h NN cord-269150-d1sgnxc0 172 18 of of IN cord-269150-d1sgnxc0 172 19 infection infection NN cord-269150-d1sgnxc0 172 20 as as IN cord-269150-d1sgnxc0 172 21 infection infection NN cord-269150-d1sgnxc0 172 22 in in IN cord-269150-d1sgnxc0 172 23 shNC shnc NN cord-269150-d1sgnxc0 172 24 cells cell NNS cord-269150-d1sgnxc0 172 25 progressed progress VBD cord-269150-d1sgnxc0 172 26 much much RB cord-269150-d1sgnxc0 172 27 faster fast RBR cord-269150-d1sgnxc0 172 28 and and CC cord-269150-d1sgnxc0 172 29 most most JJS cord-269150-d1sgnxc0 172 30 cells cell NNS cord-269150-d1sgnxc0 172 31 died die VBD cord-269150-d1sgnxc0 172 32 and and CC cord-269150-d1sgnxc0 172 33 detached detach VBN cord-269150-d1sgnxc0 172 34 ( ( -LRB- cord-269150-d1sgnxc0 172 35 Figure figure NN cord-269150-d1sgnxc0 172 36 7B 7b NN cord-269150-d1sgnxc0 172 37 ) ) -RRB- cord-269150-d1sgnxc0 172 38 . . . cord-269150-d1sgnxc0 173 1 The the DT cord-269150-d1sgnxc0 173 2 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 173 3 cell cell NN cord-269150-d1sgnxc0 173 4 line line NN cord-269150-d1sgnxc0 173 5 was be VBD cord-269150-d1sgnxc0 173 6 then then RB cord-269150-d1sgnxc0 173 7 transfected transfecte VBN cord-269150-d1sgnxc0 173 8 with with IN cord-269150-d1sgnxc0 173 9 constructs construct NNS cord-269150-d1sgnxc0 173 10 expressing express VBG cord-269150-d1sgnxc0 173 11 Flag Flag NNP cord-269150-d1sgnxc0 173 12 - - HYPH cord-269150-d1sgnxc0 173 13 tagged tag VBN cord-269150-d1sgnxc0 173 14 wild wild JJ cord-269150-d1sgnxc0 173 15 type type NN cord-269150-d1sgnxc0 174 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 174 2 ( ( -LRB- cord-269150-d1sgnxc0 174 3 FM FM NNP cord-269150-d1sgnxc0 174 4 ) ) -RRB- cord-269150-d1sgnxc0 174 5 , , , cord-269150-d1sgnxc0 174 6 triple triple JJ cord-269150-d1sgnxc0 174 7 residue residue NN cord-269150-d1sgnxc0 174 8 mutant mutant NN cord-269150-d1sgnxc0 174 9 ( ( -LRB- cord-269150-d1sgnxc0 174 10 FM(YVF FM(YVF NNP cord-269150-d1sgnxc0 174 11 ) ) -RRB- cord-269150-d1sgnxc0 174 12 ) ) -RRB- cord-269150-d1sgnxc0 174 13 , , , cord-269150-d1sgnxc0 174 14 two two CD cord-269150-d1sgnxc0 174 15 mRNA mrna NN cord-269150-d1sgnxc0 174 16 mutants mutant NNS cord-269150-d1sgnxc0 174 17 resistant resistant JJ cord-269150-d1sgnxc0 174 18 to to IN cord-269150-d1sgnxc0 174 19 silencing silence VBG cord-269150-d1sgnxc0 174 20 by by IN cord-269150-d1sgnxc0 174 21 siMadp1 siMadp1 NNP cord-269150-d1sgnxc0 174 22 based base VBN cord-269150-d1sgnxc0 174 23 on on IN cord-269150-d1sgnxc0 174 24 wild wild JJ cord-269150-d1sgnxc0 174 25 - - HYPH cord-269150-d1sgnxc0 174 26 type type NN cord-269150-d1sgnxc0 174 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 174 28 ( ( -LRB- cord-269150-d1sgnxc0 174 29 FMmut FMmut NNP cord-269150-d1sgnxc0 174 30 ) ) -RRB- cord-269150-d1sgnxc0 174 31 and and CC cord-269150-d1sgnxc0 174 32 the the DT cord-269150-d1sgnxc0 174 33 triple triple JJ cord-269150-d1sgnxc0 174 34 residue residue NN cord-269150-d1sgnxc0 174 35 mutant mutant NN cord-269150-d1sgnxc0 174 36 ( ( -LRB- cord-269150-d1sgnxc0 174 37 FMmut(YVF FMmut(YVF NNP cord-269150-d1sgnxc0 174 38 ) ) -RRB- cord-269150-d1sgnxc0 174 39 ) ) -RRB- cord-269150-d1sgnxc0 174 40 , , , cord-269150-d1sgnxc0 174 41 negative negative JJ cord-269150-d1sgnxc0 174 42 vector vector NN cord-269150-d1sgnxc0 174 43 control control NN cord-269150-d1sgnxc0 174 44 ( ( -LRB- cord-269150-d1sgnxc0 174 45 F F NNP cord-269150-d1sgnxc0 174 46 ) ) -RRB- cord-269150-d1sgnxc0 174 47 and and CC cord-269150-d1sgnxc0 174 48 EGFP EGFP NNP cord-269150-d1sgnxc0 174 49 ( ( -LRB- cord-269150-d1sgnxc0 174 50 E E NNP cord-269150-d1sgnxc0 174 51 ) ) -RRB- cord-269150-d1sgnxc0 174 52 , , , cord-269150-d1sgnxc0 174 53 respectively respectively RB cord-269150-d1sgnxc0 174 54 . . . cord-269150-d1sgnxc0 175 1 The the DT cord-269150-d1sgnxc0 175 2 two two CD cord-269150-d1sgnxc0 175 3 siRNA sirna JJ cord-269150-d1sgnxc0 175 4 - - HYPH cord-269150-d1sgnxc0 175 5 resistant resistant JJ cord-269150-d1sgnxc0 175 6 mutants mutant NNS cord-269150-d1sgnxc0 175 7 were be VBD cord-269150-d1sgnxc0 175 8 constructed construct VBN cord-269150-d1sgnxc0 175 9 by by IN cord-269150-d1sgnxc0 175 10 mutating mutate VBG cord-269150-d1sgnxc0 175 11 the the DT cord-269150-d1sgnxc0 175 12 siRNA siRNA NNP cord-269150-d1sgnxc0 175 13 - - HYPH cord-269150-d1sgnxc0 175 14 targeting target VBG cord-269150-d1sgnxc0 175 15 sequence sequence NN cord-269150-d1sgnxc0 175 16 with with IN cord-269150-d1sgnxc0 175 17 degenerate degenerate JJ cord-269150-d1sgnxc0 175 18 codons codon NNS cord-269150-d1sgnxc0 175 19 , , , cord-269150-d1sgnxc0 175 20 so so IN cord-269150-d1sgnxc0 175 21 that that IN cord-269150-d1sgnxc0 175 22 the the DT cord-269150-d1sgnxc0 175 23 protein protein NN cord-269150-d1sgnxc0 175 24 sequence sequence NN cord-269150-d1sgnxc0 175 25 of of IN cord-269150-d1sgnxc0 175 26 MADP1 MADP1 NNP cord-269150-d1sgnxc0 175 27 was be VBD cord-269150-d1sgnxc0 175 28 maintained maintain VBN cord-269150-d1sgnxc0 175 29 . . . cord-269150-d1sgnxc0 176 1 These these DT cord-269150-d1sgnxc0 176 2 transfected transfecte VBN cord-269150-d1sgnxc0 176 3 cells cell NNS cord-269150-d1sgnxc0 176 4 were be VBD cord-269150-d1sgnxc0 176 5 subsequently subsequently RB cord-269150-d1sgnxc0 176 6 infected infect VBN cord-269150-d1sgnxc0 176 7 with with IN cord-269150-d1sgnxc0 176 8 IBV IBV NNP cord-269150-d1sgnxc0 176 9 - - HYPH cord-269150-d1sgnxc0 176 10 Luc Luc NNP cord-269150-d1sgnxc0 176 11 and and CC cord-269150-d1sgnxc0 176 12 harvested harvest VBD cord-269150-d1sgnxc0 176 13 at at IN cord-269150-d1sgnxc0 176 14 19 19 CD cord-269150-d1sgnxc0 176 15 h h NN cord-269150-d1sgnxc0 176 16 post post NN cord-269150-d1sgnxc0 176 17 - - NN cord-269150-d1sgnxc0 176 18 infection infection NN cord-269150-d1sgnxc0 176 19 . . . cord-269150-d1sgnxc0 177 1 Western western JJ cord-269150-d1sgnxc0 177 2 blotting blotting NN cord-269150-d1sgnxc0 177 3 results result NNS cord-269150-d1sgnxc0 177 4 showed show VBD cord-269150-d1sgnxc0 177 5 an an DT cord-269150-d1sgnxc0 177 6 obvious obvious JJ cord-269150-d1sgnxc0 177 7 increase increase NN cord-269150-d1sgnxc0 177 8 in in IN cord-269150-d1sgnxc0 177 9 the the DT cord-269150-d1sgnxc0 177 10 amount amount NN cord-269150-d1sgnxc0 177 11 of of IN cord-269150-d1sgnxc0 177 12 IBV IBV NNP cord-269150-d1sgnxc0 177 13 N n CD cord-269150-d1sgnxc0 177 14 expression expression NN cord-269150-d1sgnxc0 177 15 in in IN cord-269150-d1sgnxc0 177 16 cells cell NNS cord-269150-d1sgnxc0 177 17 over over RB cord-269150-d1sgnxc0 177 18 - - HYPH cord-269150-d1sgnxc0 177 19 expressing express VBG cord-269150-d1sgnxc0 177 20 silencing silence VBG cord-269150-d1sgnxc0 177 21 - - HYPH cord-269150-d1sgnxc0 177 22 resistant resistant JJ cord-269150-d1sgnxc0 177 23 wild wild JJ cord-269150-d1sgnxc0 177 24 - - HYPH cord-269150-d1sgnxc0 177 25 type type NN cord-269150-d1sgnxc0 177 26 MADP1 MADP1 NNP cord-269150-d1sgnxc0 178 1 ( ( -LRB- cord-269150-d1sgnxc0 178 2 FMmut FMmut NNP cord-269150-d1sgnxc0 178 3 ) ) -RRB- cord-269150-d1sgnxc0 178 4 as as RB cord-269150-d1sgnxc0 178 5 well well RB cord-269150-d1sgnxc0 178 6 as as IN cord-269150-d1sgnxc0 178 7 a a DT cord-269150-d1sgnxc0 178 8 slight slight JJ cord-269150-d1sgnxc0 178 9 increase increase NN cord-269150-d1sgnxc0 178 10 in in IN cord-269150-d1sgnxc0 178 11 cells cell NNS cord-269150-d1sgnxc0 178 12 over over RB cord-269150-d1sgnxc0 178 13 - - HYPH cord-269150-d1sgnxc0 178 14 expressing express VBG cord-269150-d1sgnxc0 178 15 both both DT cord-269150-d1sgnxc0 178 16 normal normal JJ cord-269150-d1sgnxc0 178 17 triple triple JJ cord-269150-d1sgnxc0 178 18 residue residue NN cord-269150-d1sgnxc0 178 19 mutant mutant NN cord-269150-d1sgnxc0 178 20 ( ( -LRB- cord-269150-d1sgnxc0 178 21 FM(YVF FM(YVF NNP cord-269150-d1sgnxc0 178 22 ) ) -RRB- cord-269150-d1sgnxc0 178 23 ) ) -RRB- cord-269150-d1sgnxc0 179 1 and and CC cord-269150-d1sgnxc0 179 2 silencing silencing NN cord-269150-d1sgnxc0 179 3 - - HYPH cord-269150-d1sgnxc0 179 4 resistant resistant JJ cord-269150-d1sgnxc0 179 5 triple triple JJ cord-269150-d1sgnxc0 179 6 residue residue NN cord-269150-d1sgnxc0 179 7 mutant mutant NN cord-269150-d1sgnxc0 179 8 ( ( -LRB- cord-269150-d1sgnxc0 179 9 FMmut(YVF FMmut(YVF NNP cord-269150-d1sgnxc0 179 10 ) ) -RRB- cord-269150-d1sgnxc0 179 11 ) ) -RRB- cord-269150-d1sgnxc0 180 1 ( ( -LRB- cord-269150-d1sgnxc0 180 2 Figure Figure NNP cord-269150-d1sgnxc0 180 3 7C 7C NNP cord-269150-d1sgnxc0 180 4 ) ) -RRB- cord-269150-d1sgnxc0 180 5 . . . cord-269150-d1sgnxc0 181 1 An an DT cord-269150-d1sgnxc0 181 2 assessment assessment NN cord-269150-d1sgnxc0 181 3 of of IN cord-269150-d1sgnxc0 181 4 the the DT cord-269150-d1sgnxc0 181 5 luciferase luciferase NN cord-269150-d1sgnxc0 181 6 activity activity NN cord-269150-d1sgnxc0 181 7 of of IN cord-269150-d1sgnxc0 181 8 total total JJ cord-269150-d1sgnxc0 181 9 cell cell NN cord-269150-d1sgnxc0 181 10 lysates lysate NNS cord-269150-d1sgnxc0 181 11 showed show VBD cord-269150-d1sgnxc0 181 12 that that IN cord-269150-d1sgnxc0 181 13 over over IN cord-269150-d1sgnxc0 181 14 - - HYPH cord-269150-d1sgnxc0 181 15 expression expression NN cord-269150-d1sgnxc0 181 16 of of IN cord-269150-d1sgnxc0 181 17 triple triple JJ cord-269150-d1sgnxc0 181 18 residue residue NN cord-269150-d1sgnxc0 181 19 mutants mutant NNS cord-269150-d1sgnxc0 181 20 FM(YVF fm(yvf CD cord-269150-d1sgnxc0 181 21 ) ) -RRB- cord-269150-d1sgnxc0 181 22 and and CC cord-269150-d1sgnxc0 181 23 FMmut(YVF FMmut(YVF NNP cord-269150-d1sgnxc0 181 24 ) ) -RRB- cord-269150-d1sgnxc0 181 25 resulted result VBD cord-269150-d1sgnxc0 181 26 in in IN cord-269150-d1sgnxc0 181 27 a a DT cord-269150-d1sgnxc0 181 28 slight slight JJ cord-269150-d1sgnxc0 181 29 increase increase NN cord-269150-d1sgnxc0 181 30 of of IN cord-269150-d1sgnxc0 181 31 the the DT cord-269150-d1sgnxc0 181 32 luciferase luciferase NN cord-269150-d1sgnxc0 181 33 activity activity NN cord-269150-d1sgnxc0 181 34 in in IN cord-269150-d1sgnxc0 181 35 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 181 36 cells cell NNS cord-269150-d1sgnxc0 181 37 , , , cord-269150-d1sgnxc0 181 38 whereas whereas IN cord-269150-d1sgnxc0 181 39 over over IN cord-269150-d1sgnxc0 181 40 - - HYPH cord-269150-d1sgnxc0 181 41 expression expression NN cord-269150-d1sgnxc0 181 42 of of IN cord-269150-d1sgnxc0 181 43 silencing silence VBG cord-269150-d1sgnxc0 181 44 - - HYPH cord-269150-d1sgnxc0 181 45 resistant resistant JJ cord-269150-d1sgnxc0 181 46 wild wild JJ cord-269150-d1sgnxc0 181 47 - - HYPH cord-269150-d1sgnxc0 181 48 type type NN cord-269150-d1sgnxc0 181 49 MADP1 MADP1 NNP cord-269150-d1sgnxc0 181 50 ( ( -LRB- cord-269150-d1sgnxc0 181 51 FMmut FMmut NNP cord-269150-d1sgnxc0 181 52 ) ) -RRB- cord-269150-d1sgnxc0 181 53 resulted result VBD cord-269150-d1sgnxc0 181 54 in in IN cord-269150-d1sgnxc0 181 55 a a DT cord-269150-d1sgnxc0 181 56 more more RBR cord-269150-d1sgnxc0 181 57 drastic drastic JJ cord-269150-d1sgnxc0 181 58 increase increase NN cord-269150-d1sgnxc0 181 59 of of IN cord-269150-d1sgnxc0 181 60 the the DT cord-269150-d1sgnxc0 181 61 luciferase luciferase NN cord-269150-d1sgnxc0 181 62 activity activity NN cord-269150-d1sgnxc0 181 63 in in IN cord-269150-d1sgnxc0 181 64 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 181 65 cells cell NNS cord-269150-d1sgnxc0 181 66 ( ( -LRB- cord-269150-d1sgnxc0 181 67 Figure Figure NNP cord-269150-d1sgnxc0 181 68 7D 7D NNP cord-269150-d1sgnxc0 181 69 ) ) -RRB- cord-269150-d1sgnxc0 181 70 . . . cord-269150-d1sgnxc0 182 1 It -PRON- PRP cord-269150-d1sgnxc0 182 2 was be VBD cord-269150-d1sgnxc0 182 3 noted note VBN cord-269150-d1sgnxc0 182 4 that that IN cord-269150-d1sgnxc0 182 5 although although IN cord-269150-d1sgnxc0 182 6 MADP1 MADP1 NNP cord-269150-d1sgnxc0 182 7 interacted interact VBD cord-269150-d1sgnxc0 182 8 with with IN cord-269150-d1sgnxc0 182 9 both both DT cord-269150-d1sgnxc0 182 10 SARS SARS NNP cord-269150-d1sgnxc0 182 11 - - HYPH cord-269150-d1sgnxc0 182 12 CoV CoV NNP cord-269150-d1sgnxc0 182 13 and and CC cord-269150-d1sgnxc0 182 14 IBV IBV NNP cord-269150-d1sgnxc0 182 15 5 5 CD cord-269150-d1sgnxc0 182 16 0 0 CD cord-269150-d1sgnxc0 182 17 -UTR -utr NN cord-269150-d1sgnxc0 182 18 , , , cord-269150-d1sgnxc0 182 19 the the DT cord-269150-d1sgnxc0 182 20 interaction interaction NN cord-269150-d1sgnxc0 182 21 was be VBD cord-269150-d1sgnxc0 182 22 rather rather RB cord-269150-d1sgnxc0 182 23 weak weak JJ cord-269150-d1sgnxc0 182 24 for for IN cord-269150-d1sgnxc0 182 25 the the DT cord-269150-d1sgnxc0 182 26 former former JJ cord-269150-d1sgnxc0 182 27 . . . cord-269150-d1sgnxc0 183 1 A a DT cord-269150-d1sgnxc0 183 2 comparison comparison NN cord-269150-d1sgnxc0 183 3 of of IN cord-269150-d1sgnxc0 183 4 the the DT cord-269150-d1sgnxc0 183 5 predicted predict VBN cord-269150-d1sgnxc0 183 6 stemloop stemloop NN cord-269150-d1sgnxc0 183 7 I -PRON- PRP cord-269150-d1sgnxc0 183 8 structures structure NNS cord-269150-d1sgnxc0 183 9 from from IN cord-269150-d1sgnxc0 183 10 both both DT cord-269150-d1sgnxc0 183 11 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 183 12 indicated indicate VBD cord-269150-d1sgnxc0 183 13 a a DT cord-269150-d1sgnxc0 183 14 marked marked JJ cord-269150-d1sgnxc0 183 15 difference difference NN cord-269150-d1sgnxc0 183 16 in in IN cord-269150-d1sgnxc0 183 17 their -PRON- PRP$ cord-269150-d1sgnxc0 183 18 primary primary JJ cord-269150-d1sgnxc0 183 19 sequence sequence NN cord-269150-d1sgnxc0 183 20 as as RB cord-269150-d1sgnxc0 183 21 well well RB cord-269150-d1sgnxc0 183 22 as as IN cord-269150-d1sgnxc0 183 23 the the DT cord-269150-d1sgnxc0 183 24 secondary secondary JJ cord-269150-d1sgnxc0 183 25 structures structure NNS cord-269150-d1sgnxc0 183 26 . . . cord-269150-d1sgnxc0 184 1 Hence hence RB cord-269150-d1sgnxc0 184 2 , , , cord-269150-d1sgnxc0 184 3 a a DT cord-269150-d1sgnxc0 184 4 third third JJ cord-269150-d1sgnxc0 184 5 coronavirus coronavirus NN cord-269150-d1sgnxc0 184 6 , , , cord-269150-d1sgnxc0 184 7 HCoV HCoV NNP cord-269150-d1sgnxc0 184 8 - - HYPH cord-269150-d1sgnxc0 184 9 OC43 OC43 NNP cord-269150-d1sgnxc0 184 10 , , , cord-269150-d1sgnxc0 184 11 whose whose WP$ cord-269150-d1sgnxc0 184 12 stem stem NN cord-269150-d1sgnxc0 184 13 - - HYPH cord-269150-d1sgnxc0 184 14 loop loop NN cord-269150-d1sgnxc0 184 15 I -PRON- PRP cord-269150-d1sgnxc0 184 16 which which WDT cord-269150-d1sgnxc0 184 17 deviated deviate VBD cord-269150-d1sgnxc0 184 18 further further RB cord-269150-d1sgnxc0 184 19 from from IN cord-269150-d1sgnxc0 184 20 IBV IBV NNP cord-269150-d1sgnxc0 184 21 than than IN cord-269150-d1sgnxc0 184 22 SARS SARS NNP cord-269150-d1sgnxc0 184 23 - - HYPH cord-269150-d1sgnxc0 184 24 CoV CoV NNP cord-269150-d1sgnxc0 184 25 , , , cord-269150-d1sgnxc0 184 26 was be VBD cord-269150-d1sgnxc0 184 27 assessed assess VBN cord-269150-d1sgnxc0 184 28 for for IN cord-269150-d1sgnxc0 184 29 its -PRON- PRP$ cord-269150-d1sgnxc0 184 30 binding binding NN cord-269150-d1sgnxc0 184 31 to to IN cord-269150-d1sgnxc0 184 32 MADP1 MADP1 NNP cord-269150-d1sgnxc0 185 1 ( ( -LRB- cord-269150-d1sgnxc0 185 2 Figure figure NN cord-269150-d1sgnxc0 185 3 8A 8a NN cord-269150-d1sgnxc0 185 4 ) ) -RRB- cord-269150-d1sgnxc0 185 5 . . . cord-269150-d1sgnxc0 186 1 It -PRON- PRP cord-269150-d1sgnxc0 186 2 was be VBD cord-269150-d1sgnxc0 186 3 found find VBN cord-269150-d1sgnxc0 186 4 that that IN cord-269150-d1sgnxc0 186 5 the the DT cord-269150-d1sgnxc0 186 6 binding binding NN cord-269150-d1sgnxc0 186 7 of of IN cord-269150-d1sgnxc0 186 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 186 9 to to IN cord-269150-d1sgnxc0 186 10 the the DT cord-269150-d1sgnxc0 186 11 5 5 CD cord-269150-d1sgnxc0 186 12 0 0 CD cord-269150-d1sgnxc0 186 13 UTR UTR NNP cord-269150-d1sgnxc0 186 14 of of IN cord-269150-d1sgnxc0 186 15 HCoV HCoV NNP cord-269150-d1sgnxc0 186 16 - - : cord-269150-d1sgnxc0 186 17 OC43 OC43 NNP cord-269150-d1sgnxc0 186 18 was be VBD cord-269150-d1sgnxc0 186 19 as as RB cord-269150-d1sgnxc0 186 20 weak weak JJ cord-269150-d1sgnxc0 186 21 , , , cord-269150-d1sgnxc0 186 22 if if IN cord-269150-d1sgnxc0 186 23 not not RB cord-269150-d1sgnxc0 186 24 weaker weak JJR cord-269150-d1sgnxc0 186 25 than than IN cord-269150-d1sgnxc0 186 26 SARS- SARS- NNP cord-269150-d1sgnxc0 187 1 CoV. CoV. NNP cord-269150-d1sgnxc0 188 1 It -PRON- PRP cord-269150-d1sgnxc0 188 2 was be VBD cord-269150-d1sgnxc0 188 3 also also RB cord-269150-d1sgnxc0 188 4 noted note VBN cord-269150-d1sgnxc0 188 5 that that IN cord-269150-d1sgnxc0 188 6 the the DT cord-269150-d1sgnxc0 188 7 predicted predict VBN cord-269150-d1sgnxc0 188 8 stem stem NN cord-269150-d1sgnxc0 188 9 - - HYPH cord-269150-d1sgnxc0 188 10 loop loop NN cord-269150-d1sgnxc0 188 11 I I NNP cord-269150-d1sgnxc0 188 12 structure structure NN cord-269150-d1sgnxc0 188 13 of of IN cord-269150-d1sgnxc0 188 14 HCoV HCoV NNP cord-269150-d1sgnxc0 188 15 - - : cord-269150-d1sgnxc0 188 16 OC43 OC43 NNP cord-269150-d1sgnxc0 188 17 contained contain VBD cord-269150-d1sgnxc0 188 18 a a DT cord-269150-d1sgnxc0 188 19 bulge bulge NN cord-269150-d1sgnxc0 188 20 which which WDT cord-269150-d1sgnxc0 188 21 encompassed encompass VBD cord-269150-d1sgnxc0 188 22 a a DT cord-269150-d1sgnxc0 188 23 larger large JJR cord-269150-d1sgnxc0 188 24 area area NN cord-269150-d1sgnxc0 188 25 of of IN cord-269150-d1sgnxc0 188 26 the the DT cord-269150-d1sgnxc0 188 27 stem stem NN cord-269150-d1sgnxc0 188 28 compared compare VBN cord-269150-d1sgnxc0 188 29 to to IN cord-269150-d1sgnxc0 188 30 SARS SARS NNP cord-269150-d1sgnxc0 188 31 - - HYPH cord-269150-d1sgnxc0 188 32 CoV CoV NNP cord-269150-d1sgnxc0 188 33 ( ( -LRB- cord-269150-d1sgnxc0 188 34 Figure figure NN cord-269150-d1sgnxc0 188 35 8B 8b NN cord-269150-d1sgnxc0 188 36 ) ) -RRB- cord-269150-d1sgnxc0 188 37 . . . cord-269150-d1sgnxc0 189 1 Bulges bulge NNS cord-269150-d1sgnxc0 189 2 were be VBD cord-269150-d1sgnxc0 189 3 conspicuously conspicuously RB cord-269150-d1sgnxc0 189 4 absent absent JJ cord-269150-d1sgnxc0 189 5 from from IN cord-269150-d1sgnxc0 189 6 the the DT cord-269150-d1sgnxc0 189 7 IBV IBV NNP cord-269150-d1sgnxc0 189 8 stem stem NN cord-269150-d1sgnxc0 189 9 - - HYPH cord-269150-d1sgnxc0 189 10 loop loop NN cord-269150-d1sgnxc0 190 1 I -PRON- PRP cord-269150-d1sgnxc0 190 2 ( ( -LRB- cord-269150-d1sgnxc0 190 3 Figure figure NN cord-269150-d1sgnxc0 190 4 8B 8b NN cord-269150-d1sgnxc0 190 5 ) ) -RRB- cord-269150-d1sgnxc0 190 6 . . . cord-269150-d1sgnxc0 191 1 In in IN cord-269150-d1sgnxc0 191 2 addition addition NN cord-269150-d1sgnxc0 191 3 to to IN cord-269150-d1sgnxc0 191 4 the the DT cord-269150-d1sgnxc0 191 5 differences difference NNS cord-269150-d1sgnxc0 191 6 in in IN cord-269150-d1sgnxc0 191 7 the the DT cord-269150-d1sgnxc0 191 8 secondary secondary JJ cord-269150-d1sgnxc0 191 9 structures structure NNS cord-269150-d1sgnxc0 191 10 between between IN cord-269150-d1sgnxc0 191 11 the the DT cord-269150-d1sgnxc0 191 12 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 191 13 , , , cord-269150-d1sgnxc0 191 14 there there EX cord-269150-d1sgnxc0 191 15 was be VBD cord-269150-d1sgnxc0 191 16 a a DT cord-269150-d1sgnxc0 191 17 lack lack NN cord-269150-d1sgnxc0 191 18 of of IN cord-269150-d1sgnxc0 191 19 sequence sequence NN cord-269150-d1sgnxc0 191 20 similarity similarity NN cord-269150-d1sgnxc0 191 21 as as RB cord-269150-d1sgnxc0 191 22 well well RB cord-269150-d1sgnxc0 191 23 ( ( -LRB- cord-269150-d1sgnxc0 191 24 Figure figure NN cord-269150-d1sgnxc0 191 25 8B 8b NN cord-269150-d1sgnxc0 191 26 ) ) -RRB- cord-269150-d1sgnxc0 191 27 . . . cord-269150-d1sgnxc0 192 1 Previous previous JJ cord-269150-d1sgnxc0 192 2 studies study NNS cord-269150-d1sgnxc0 192 3 on on IN cord-269150-d1sgnxc0 192 4 the the DT cord-269150-d1sgnxc0 192 5 involvement involvement NN cord-269150-d1sgnxc0 192 6 of of IN cord-269150-d1sgnxc0 192 7 host host NN cord-269150-d1sgnxc0 192 8 proteins protein NNS cord-269150-d1sgnxc0 192 9 in in IN cord-269150-d1sgnxc0 192 10 viral viral JJ cord-269150-d1sgnxc0 192 11 RNA RNA NNP cord-269150-d1sgnxc0 192 12 synthesis synthesis NN cord-269150-d1sgnxc0 192 13 have have VBP cord-269150-d1sgnxc0 192 14 revealed reveal VBN cord-269150-d1sgnxc0 192 15 a a DT cord-269150-d1sgnxc0 192 16 number number NN cord-269150-d1sgnxc0 192 17 of of IN cord-269150-d1sgnxc0 192 18 proteins protein NNS cord-269150-d1sgnxc0 192 19 which which WDT cord-269150-d1sgnxc0 192 20 are be VBP cord-269150-d1sgnxc0 192 21 able able JJ cord-269150-d1sgnxc0 192 22 to to TO cord-269150-d1sgnxc0 192 23 interact interact VB cord-269150-d1sgnxc0 192 24 with with IN cord-269150-d1sgnxc0 192 25 the the DT cord-269150-d1sgnxc0 192 26 UTRs utr NNS cord-269150-d1sgnxc0 192 27 of of IN cord-269150-d1sgnxc0 192 28 viral viral JJ cord-269150-d1sgnxc0 192 29 genomes genome NNS cord-269150-d1sgnxc0 192 30 ( ( -LRB- cord-269150-d1sgnxc0 192 31 29 29 CD cord-269150-d1sgnxc0 192 32 , , , cord-269150-d1sgnxc0 192 33 30 30 CD cord-269150-d1sgnxc0 192 34 , , , cord-269150-d1sgnxc0 192 35 32 32 CD cord-269150-d1sgnxc0 192 36 , , , cord-269150-d1sgnxc0 192 37 ( ( -LRB- cord-269150-d1sgnxc0 192 38 40 40 CD cord-269150-d1sgnxc0 192 39 ) ) -RRB- cord-269150-d1sgnxc0 192 40 ( ( -LRB- cord-269150-d1sgnxc0 192 41 41 41 CD cord-269150-d1sgnxc0 192 42 ) ) -RRB- cord-269150-d1sgnxc0 192 43 ( ( -LRB- cord-269150-d1sgnxc0 192 44 42 42 CD cord-269150-d1sgnxc0 192 45 ) ) -RRB- cord-269150-d1sgnxc0 192 46 ( ( -LRB- cord-269150-d1sgnxc0 192 47 43 43 CD cord-269150-d1sgnxc0 192 48 ) ) -RRB- cord-269150-d1sgnxc0 192 49 . . . cord-269150-d1sgnxc0 193 1 Some some DT cord-269150-d1sgnxc0 193 2 of of IN cord-269150-d1sgnxc0 193 3 these these DT cord-269150-d1sgnxc0 193 4 proteins protein NNS cord-269150-d1sgnxc0 193 5 may may MD cord-269150-d1sgnxc0 193 6 also also RB cord-269150-d1sgnxc0 193 7 interact interact VB cord-269150-d1sgnxc0 193 8 with with IN cord-269150-d1sgnxc0 193 9 other other JJ cord-269150-d1sgnxc0 193 10 viral viral JJ cord-269150-d1sgnxc0 193 11 proteins protein NNS cord-269150-d1sgnxc0 193 12 as as RB cord-269150-d1sgnxc0 193 13 well well RB cord-269150-d1sgnxc0 193 14 ( ( -LRB- cord-269150-d1sgnxc0 193 15 30 30 CD cord-269150-d1sgnxc0 193 16 , , , cord-269150-d1sgnxc0 193 17 40 40 CD cord-269150-d1sgnxc0 193 18 ) ) -RRB- cord-269150-d1sgnxc0 193 19 . . . cord-269150-d1sgnxc0 194 1 Our -PRON- PRP$ cord-269150-d1sgnxc0 194 2 attempts attempt NNS cord-269150-d1sgnxc0 194 3 to to TO cord-269150-d1sgnxc0 194 4 identify identify VB cord-269150-d1sgnxc0 194 5 host host NN cord-269150-d1sgnxc0 194 6 proteins protein NNS cord-269150-d1sgnxc0 194 7 involved involve VBN cord-269150-d1sgnxc0 194 8 in in IN cord-269150-d1sgnxc0 194 9 this this DT cord-269150-d1sgnxc0 194 10 early early JJ cord-269150-d1sgnxc0 194 11 process process NN cord-269150-d1sgnxc0 194 12 of of IN cord-269150-d1sgnxc0 194 13 the the DT cord-269150-d1sgnxc0 194 14 coronavirus coronavirus NN cord-269150-d1sgnxc0 194 15 life life NN cord-269150-d1sgnxc0 194 16 cycle cycle NN cord-269150-d1sgnxc0 194 17 yielded yield VBD cord-269150-d1sgnxc0 194 18 MADP1 MADP1 NNP cord-269150-d1sgnxc0 194 19 . . . cord-269150-d1sgnxc0 195 1 This this DT cord-269150-d1sgnxc0 195 2 protein protein NN cord-269150-d1sgnxc0 195 3 was be VBD cord-269150-d1sgnxc0 195 4 shown show VBN cord-269150-d1sgnxc0 195 5 to to TO cord-269150-d1sgnxc0 195 6 be be VB cord-269150-d1sgnxc0 195 7 localized localize VBN cord-269150-d1sgnxc0 195 8 to to IN cord-269150-d1sgnxc0 195 9 the the DT cord-269150-d1sgnxc0 195 10 nucleoplasm nucleoplasm NN cord-269150-d1sgnxc0 195 11 but but CC cord-269150-d1sgnxc0 195 12 excluded exclude VBN cord-269150-d1sgnxc0 195 13 from from IN cord-269150-d1sgnxc0 195 14 the the DT cord-269150-d1sgnxc0 195 15 nucleolus nucleolus NN cord-269150-d1sgnxc0 195 16 , , , cord-269150-d1sgnxc0 195 17 but but CC cord-269150-d1sgnxc0 195 18 its -PRON- PRP$ cord-269150-d1sgnxc0 195 19 role role NN cord-269150-d1sgnxc0 195 20 in in IN cord-269150-d1sgnxc0 195 21 RNA RNA NNP cord-269150-d1sgnxc0 195 22 splicing splicing NN cord-269150-d1sgnxc0 195 23 remains remain VBZ cord-269150-d1sgnxc0 195 24 to to TO cord-269150-d1sgnxc0 195 25 be be VB cord-269150-d1sgnxc0 195 26 determined determine VBN cord-269150-d1sgnxc0 195 27 ( ( -LRB- cord-269150-d1sgnxc0 195 28 37 37 CD cord-269150-d1sgnxc0 195 29 ) ) -RRB- cord-269150-d1sgnxc0 195 30 . . . cord-269150-d1sgnxc0 196 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 196 2 contains contain VBZ cord-269150-d1sgnxc0 196 3 two two CD cord-269150-d1sgnxc0 196 4 conserved conserve VBN cord-269150-d1sgnxc0 196 5 RNA rna NN cord-269150-d1sgnxc0 196 6 - - HYPH cord-269150-d1sgnxc0 196 7 binding bind VBG cord-269150-d1sgnxc0 196 8 domains domain NNS cord-269150-d1sgnxc0 196 9 , , , cord-269150-d1sgnxc0 196 10 the the DT cord-269150-d1sgnxc0 196 11 RNA RNA NNP cord-269150-d1sgnxc0 196 12 recognition recognition NN cord-269150-d1sgnxc0 196 13 motif motif NN cord-269150-d1sgnxc0 196 14 ( ( -LRB- cord-269150-d1sgnxc0 196 15 RRM RRM NNP cord-269150-d1sgnxc0 196 16 ) ) -RRB- cord-269150-d1sgnxc0 196 17 1 1 CD cord-269150-d1sgnxc0 196 18 and and CC cord-269150-d1sgnxc0 196 19 universal universal JJ cord-269150-d1sgnxc0 196 20 minicircle minicircle NNP cord-269150-d1sgnxc0 196 21 sequence sequence NN cord-269150-d1sgnxc0 196 22 binding bind VBG cord-269150-d1sgnxc0 196 23 protein protein NN cord-269150-d1sgnxc0 196 24 ( ( -LRB- cord-269150-d1sgnxc0 196 25 UMSBP UMSBP NNP cord-269150-d1sgnxc0 196 26 ) ) -RRB- cord-269150-d1sgnxc0 196 27 domains domain NNS cord-269150-d1sgnxc0 196 28 ( ( -LRB- cord-269150-d1sgnxc0 196 29 a a DT cord-269150-d1sgnxc0 196 30 zinc zinc NN cord-269150-d1sgnxc0 196 31 finger finger NN cord-269150-d1sgnxc0 196 32 CCHC CCHC NNP cord-269150-d1sgnxc0 196 33 - - HYPH cord-269150-d1sgnxc0 196 34 type type NN cord-269150-d1sgnxc0 196 35 ) ) -RRB- cord-269150-d1sgnxc0 196 36 ( ( -LRB- cord-269150-d1sgnxc0 196 37 35 35 CD cord-269150-d1sgnxc0 196 38 ) ) -RRB- cord-269150-d1sgnxc0 196 39 . . . cord-269150-d1sgnxc0 197 1 The the DT cord-269150-d1sgnxc0 197 2 former former JJ cord-269150-d1sgnxc0 197 3 was be VBD cord-269150-d1sgnxc0 197 4 determined determined JJ cord-269150-d1sgnxc0 197 5 to to TO cord-269150-d1sgnxc0 197 6 be be VB cord-269150-d1sgnxc0 197 7 the the DT cord-269150-d1sgnxc0 197 8 domain domain NN cord-269150-d1sgnxc0 197 9 responsible responsible JJ cord-269150-d1sgnxc0 197 10 for for IN cord-269150-d1sgnxc0 197 11 the the DT cord-269150-d1sgnxc0 197 12 interaction interaction NN cord-269150-d1sgnxc0 197 13 between between IN cord-269150-d1sgnxc0 197 14 MADP1 MADP1 NNP cord-269150-d1sgnxc0 197 15 and and CC cord-269150-d1sgnxc0 197 16 IBV IBV NNP cord-269150-d1sgnxc0 197 17 5 5 CD cord-269150-d1sgnxc0 197 18 0 0 CD cord-269150-d1sgnxc0 197 19 -UTR -utr NN cord-269150-d1sgnxc0 197 20 . . . cord-269150-d1sgnxc0 198 1 The the DT cord-269150-d1sgnxc0 198 2 MADP1 MADP1 NNP cord-269150-d1sgnxc0 198 3 RRM rrm NN cord-269150-d1sgnxc0 198 4 1 1 CD cord-269150-d1sgnxc0 198 5 domain domain NN cord-269150-d1sgnxc0 198 6 interacts interact VBZ cord-269150-d1sgnxc0 198 7 with with IN cord-269150-d1sgnxc0 198 8 nucleic nucleic JJ cord-269150-d1sgnxc0 198 9 acid acid NN cord-269150-d1sgnxc0 198 10 residues residue NNS cord-269150-d1sgnxc0 198 11 via via IN cord-269150-d1sgnxc0 198 12 aromatic aromatic JJ cord-269150-d1sgnxc0 198 13 and and CC cord-269150-d1sgnxc0 198 14 hydrophobic hydrophobic JJ cord-269150-d1sgnxc0 198 15 side side NN cord-269150-d1sgnxc0 198 16 chains chain NNS cord-269150-d1sgnxc0 198 17 at at IN cord-269150-d1sgnxc0 198 18 its -PRON- PRP$ cord-269150-d1sgnxc0 198 19 active active JJ cord-269150-d1sgnxc0 198 20 site site NN cord-269150-d1sgnxc0 198 21 , , , cord-269150-d1sgnxc0 198 22 which which WDT cord-269150-d1sgnxc0 198 23 in in IN cord-269150-d1sgnxc0 198 24 the the DT cord-269150-d1sgnxc0 198 25 case case NN cord-269150-d1sgnxc0 198 26 supplied supply VBN cord-269150-d1sgnxc0 198 27 by by IN cord-269150-d1sgnxc0 198 28 phenylalanine phenylalanine NN cord-269150-d1sgnxc0 198 29 55 55 CD cord-269150-d1sgnxc0 198 30 and and CC cord-269150-d1sgnxc0 198 31 valine valine NN cord-269150-d1sgnxc0 198 32 53 53 CD cord-269150-d1sgnxc0 198 33 , , , cord-269150-d1sgnxc0 198 34 respectively respectively RB cord-269150-d1sgnxc0 198 35 . . . cord-269150-d1sgnxc0 199 1 Tyrosine tyrosine NN cord-269150-d1sgnxc0 199 2 13 13 CD cord-269150-d1sgnxc0 199 3 may may MD cord-269150-d1sgnxc0 199 4 have have VB cord-269150-d1sgnxc0 199 5 acted act VBN cord-269150-d1sgnxc0 199 6 as as IN cord-269150-d1sgnxc0 199 7 an an DT cord-269150-d1sgnxc0 199 8 anchor anchor NN cord-269150-d1sgnxc0 199 9 for for IN cord-269150-d1sgnxc0 199 10 the the DT cord-269150-d1sgnxc0 199 11 phosphate phosphate NN cord-269150-d1sgnxc0 199 12 backbone backbone NN cord-269150-d1sgnxc0 199 13 via via IN cord-269150-d1sgnxc0 199 14 electrostatic electrostatic JJ cord-269150-d1sgnxc0 199 15 interactions interaction NNS cord-269150-d1sgnxc0 199 16 . . . cord-269150-d1sgnxc0 200 1 In in IN cord-269150-d1sgnxc0 200 2 this this DT cord-269150-d1sgnxc0 200 3 study study NN cord-269150-d1sgnxc0 200 4 , , , cord-269150-d1sgnxc0 200 5 interaction interaction NN cord-269150-d1sgnxc0 200 6 between between IN cord-269150-d1sgnxc0 200 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 200 8 and and CC cord-269150-d1sgnxc0 200 9 the the DT cord-269150-d1sgnxc0 200 10 SARS SARS NNP cord-269150-d1sgnxc0 200 11 - - HYPH cord-269150-d1sgnxc0 200 12 CoV CoV NNP cord-269150-d1sgnxc0 200 13 and and CC cord-269150-d1sgnxc0 200 14 IBV IBV NNP cord-269150-d1sgnxc0 200 15 5 5 CD cord-269150-d1sgnxc0 200 16 0 0 CD cord-269150-d1sgnxc0 200 17 -UTR -utr NN cord-269150-d1sgnxc0 200 18 was be VBD cord-269150-d1sgnxc0 200 19 initially initially RB cord-269150-d1sgnxc0 200 20 identified identify VBN cord-269150-d1sgnxc0 200 21 by by IN cord-269150-d1sgnxc0 200 22 a a DT cord-269150-d1sgnxc0 200 23 yeast yeast NN cord-269150-d1sgnxc0 200 24 - - HYPH cord-269150-d1sgnxc0 200 25 based base VBN cord-269150-d1sgnxc0 200 26 three three CD cord-269150-d1sgnxc0 200 27 hybrid hybrid NN cord-269150-d1sgnxc0 200 28 screen screen NN cord-269150-d1sgnxc0 200 29 and and CC cord-269150-d1sgnxc0 200 30 subsequently subsequently RB cord-269150-d1sgnxc0 200 31 confirmed confirm VBD cord-269150-d1sgnxc0 200 32 using use VBG cord-269150-d1sgnxc0 200 33 an an DT cord-269150-d1sgnxc0 200 34 in in FW cord-269150-d1sgnxc0 200 35 vitro vitro FW cord-269150-d1sgnxc0 200 36 RNA RNA NNP cord-269150-d1sgnxc0 200 37 pull pull VB cord-269150-d1sgnxc0 200 38 - - HYPH cord-269150-d1sgnxc0 200 39 down down RP cord-269150-d1sgnxc0 200 40 assay assay NN cord-269150-d1sgnxc0 200 41 with with IN cord-269150-d1sgnxc0 200 42 IBV IBV NNP cord-269150-d1sgnxc0 200 43 5 5 CD cord-269150-d1sgnxc0 200 44 0 0 CD cord-269150-d1sgnxc0 200 45 -UTR -utr NN cord-269150-d1sgnxc0 200 46 . . . cord-269150-d1sgnxc0 201 1 A a DT cord-269150-d1sgnxc0 201 2 deeper deep JJR cord-269150-d1sgnxc0 201 3 look look NN cord-269150-d1sgnxc0 201 4 at at IN cord-269150-d1sgnxc0 201 5 the the DT cord-269150-d1sgnxc0 201 6 details detail NNS cord-269150-d1sgnxc0 201 7 of of IN cord-269150-d1sgnxc0 201 8 this this DT cord-269150-d1sgnxc0 201 9 interaction interaction NN cord-269150-d1sgnxc0 201 10 revealed reveal VBD cord-269150-d1sgnxc0 201 11 that that IN cord-269150-d1sgnxc0 201 12 the the DT cord-269150-d1sgnxc0 201 13 RNA RNA NNP cord-269150-d1sgnxc0 201 14 recognition recognition NN cord-269150-d1sgnxc0 201 15 motif motif NN cord-269150-d1sgnxc0 201 16 , , , cord-269150-d1sgnxc0 201 17 but but CC cord-269150-d1sgnxc0 201 18 not not RB cord-269150-d1sgnxc0 201 19 the the DT cord-269150-d1sgnxc0 201 20 zinc zinc NN cord-269150-d1sgnxc0 201 21 finger finger NN cord-269150-d1sgnxc0 201 22 motif motif NN cord-269150-d1sgnxc0 201 23 , , , cord-269150-d1sgnxc0 201 24 of of IN cord-269150-d1sgnxc0 201 25 MADP1 MADP1 NNP cord-269150-d1sgnxc0 201 26 , , , cord-269150-d1sgnxc0 201 27 is be VBZ cord-269150-d1sgnxc0 201 28 responsible responsible JJ cord-269150-d1sgnxc0 201 29 for for IN cord-269150-d1sgnxc0 201 30 the the DT cord-269150-d1sgnxc0 201 31 interaction interaction NN cord-269150-d1sgnxc0 201 32 . . . cord-269150-d1sgnxc0 202 1 This this DT cord-269150-d1sgnxc0 202 2 interaction interaction NN cord-269150-d1sgnxc0 202 3 is be VBZ cord-269150-d1sgnxc0 202 4 also also RB cord-269150-d1sgnxc0 202 5 shown show VBN cord-269150-d1sgnxc0 202 6 to to TO cord-269150-d1sgnxc0 202 7 be be VB cord-269150-d1sgnxc0 202 8 specific specific JJ cord-269150-d1sgnxc0 202 9 and and CC cord-269150-d1sgnxc0 202 10 stem stem NN cord-269150-d1sgnxc0 202 11 - - HYPH cord-269150-d1sgnxc0 202 12 loop loop NN cord-269150-d1sgnxc0 202 13 I i NN cord-269150-d1sgnxc0 202 14 of of IN cord-269150-d1sgnxc0 202 15 IBV IBV NNP cord-269150-d1sgnxc0 202 16 5 5 CD cord-269150-d1sgnxc0 202 17 0 0 CD cord-269150-d1sgnxc0 202 18 -UTR -utr NN cord-269150-d1sgnxc0 202 19 is be VBZ cord-269150-d1sgnxc0 202 20 essential essential JJ cord-269150-d1sgnxc0 202 21 for for IN cord-269150-d1sgnxc0 202 22 the the DT cord-269150-d1sgnxc0 202 23 interaction interaction NN cord-269150-d1sgnxc0 202 24 to to TO cord-269150-d1sgnxc0 202 25 occur occur VB cord-269150-d1sgnxc0 202 26 . . . cord-269150-d1sgnxc0 203 1 Although although IN cord-269150-d1sgnxc0 203 2 MADP1 MADP1 NNP cord-269150-d1sgnxc0 203 3 was be VBD cord-269150-d1sgnxc0 203 4 reported report VBN cord-269150-d1sgnxc0 203 5 to to TO cord-269150-d1sgnxc0 203 6 be be VB cord-269150-d1sgnxc0 203 7 a a DT cord-269150-d1sgnxc0 203 8 nuclear nuclear JJ cord-269150-d1sgnxc0 203 9 protein protein NN cord-269150-d1sgnxc0 203 10 ( ( -LRB- cord-269150-d1sgnxc0 203 11 35 35 CD cord-269150-d1sgnxc0 203 12 ) ) -RRB- cord-269150-d1sgnxc0 203 13 , , , cord-269150-d1sgnxc0 203 14 it -PRON- PRP cord-269150-d1sgnxc0 203 15 could could MD cord-269150-d1sgnxc0 203 16 be be VB cord-269150-d1sgnxc0 203 17 detected detect VBN cord-269150-d1sgnxc0 203 18 in in IN cord-269150-d1sgnxc0 203 19 the the DT cord-269150-d1sgnxc0 203 20 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 203 21 of of IN cord-269150-d1sgnxc0 203 22 IBV IBV NNP cord-269150-d1sgnxc0 203 23 - - HYPH cord-269150-d1sgnxc0 203 24 infected infect VBN cord-269150-d1sgnxc0 203 25 cells cell NNS cord-269150-d1sgnxc0 203 26 and and CC cord-269150-d1sgnxc0 203 27 partially partially RB cord-269150-d1sgnxc0 203 28 overlaps overlap VBZ cord-269150-d1sgnxc0 203 29 with with IN cord-269150-d1sgnxc0 203 30 the the DT cord-269150-d1sgnxc0 203 31 de de NNP cord-269150-d1sgnxc0 203 32 novo novo NNP cord-269150-d1sgnxc0 203 33 synthesized synthesize VBN cord-269150-d1sgnxc0 203 34 viral viral JJ cord-269150-d1sgnxc0 203 35 RNA RNA NNP cord-269150-d1sgnxc0 203 36 , , , cord-269150-d1sgnxc0 203 37 which which WDT cord-269150-d1sgnxc0 203 38 marks mark VBZ cord-269150-d1sgnxc0 203 39 the the DT cord-269150-d1sgnxc0 203 40 location location NN cord-269150-d1sgnxc0 203 41 of of IN cord-269150-d1sgnxc0 203 42 the the DT cord-269150-d1sgnxc0 203 43 RTCs rtc NNS cord-269150-d1sgnxc0 203 44 in in IN cord-269150-d1sgnxc0 203 45 infected infected JJ cord-269150-d1sgnxc0 203 46 cells cell NNS cord-269150-d1sgnxc0 203 47 in in IN cord-269150-d1sgnxc0 203 48 the the DT cord-269150-d1sgnxc0 203 49 presence presence NN cord-269150-d1sgnxc0 203 50 of of IN cord-269150-d1sgnxc0 203 51 actinomycin actinomycin NNS cord-269150-d1sgnxc0 203 52 D. D. NNP cord-269150-d1sgnxc0 203 53 Silencing Silencing NNP cord-269150-d1sgnxc0 203 54 of of IN cord-269150-d1sgnxc0 203 55 MADP1 MADP1 NNP cord-269150-d1sgnxc0 203 56 resulted result VBD cord-269150-d1sgnxc0 203 57 in in IN cord-269150-d1sgnxc0 203 58 a a DT cord-269150-d1sgnxc0 203 59 marked marked JJ cord-269150-d1sgnxc0 203 60 reduction reduction NN cord-269150-d1sgnxc0 203 61 in in IN cord-269150-d1sgnxc0 203 62 syncytium syncytium NN cord-269150-d1sgnxc0 203 63 formation formation NN cord-269150-d1sgnxc0 203 64 upon upon IN cord-269150-d1sgnxc0 203 65 IBV IBV NNP cord-269150-d1sgnxc0 203 66 infection infection NN cord-269150-d1sgnxc0 203 67 . . . cord-269150-d1sgnxc0 204 1 A a DT cord-269150-d1sgnxc0 204 2 closer close JJR cord-269150-d1sgnxc0 204 3 examination examination NN cord-269150-d1sgnxc0 204 4 revealed reveal VBD cord-269150-d1sgnxc0 204 5 that that IN cord-269150-d1sgnxc0 204 6 the the DT cord-269150-d1sgnxc0 204 7 synthesis synthesis NN cord-269150-d1sgnxc0 204 8 of of IN cord-269150-d1sgnxc0 204 9 both both DT cord-269150-d1sgnxc0 204 10 genome-(gRNA genome-(gRNA NNPS cord-269150-d1sgnxc0 204 11 ) ) -RRB- cord-269150-d1sgnxc0 204 12 and and CC cord-269150-d1sgnxc0 204 13 subgenome subgenome NN cord-269150-d1sgnxc0 204 14 - - HYPH cord-269150-d1sgnxc0 204 15 length length NN cord-269150-d1sgnxc0 204 16 RNAs rna NNS cord-269150-d1sgnxc0 204 17 ( ( -LRB- cord-269150-d1sgnxc0 204 18 sgRNA sgRNA VBG cord-269150-d1sgnxc0 204 19 ) ) -RRB- cord-269150-d1sgnxc0 204 20 was be VBD cord-269150-d1sgnxc0 204 21 compromised compromise VBN cord-269150-d1sgnxc0 204 22 , , , cord-269150-d1sgnxc0 204 23 resulting result VBG cord-269150-d1sgnxc0 204 24 in in IN cord-269150-d1sgnxc0 204 25 a a DT cord-269150-d1sgnxc0 204 26 drastic drastic JJ cord-269150-d1sgnxc0 204 27 reduction reduction NN cord-269150-d1sgnxc0 204 28 of of IN cord-269150-d1sgnxc0 204 29 viral viral JJ cord-269150-d1sgnxc0 204 30 structural structural JJ cord-269150-d1sgnxc0 204 31 protein protein NN cord-269150-d1sgnxc0 204 32 expression expression NN cord-269150-d1sgnxc0 204 33 and and CC cord-269150-d1sgnxc0 204 34 release release NN cord-269150-d1sgnxc0 204 35 of of IN cord-269150-d1sgnxc0 204 36 viral viral JJ cord-269150-d1sgnxc0 204 37 progeny progeny NN cord-269150-d1sgnxc0 204 38 ( ( -LRB- cord-269150-d1sgnxc0 204 39 titers titer NNS cord-269150-d1sgnxc0 204 40 ) ) -RRB- cord-269150-d1sgnxc0 204 41 , , , cord-269150-d1sgnxc0 204 42 hence hence RB cord-269150-d1sgnxc0 204 43 the the DT cord-269150-d1sgnxc0 204 44 overall overall JJ cord-269150-d1sgnxc0 204 45 reduction reduction NN cord-269150-d1sgnxc0 204 46 of of IN cord-269150-d1sgnxc0 204 47 viral viral JJ cord-269150-d1sgnxc0 204 48 infectivity infectivity NN cord-269150-d1sgnxc0 204 49 in in IN cord-269150-d1sgnxc0 204 50 the the DT cord-269150-d1sgnxc0 204 51 cells cell NNS cord-269150-d1sgnxc0 204 52 . . . cord-269150-d1sgnxc0 205 1 Across across IN cord-269150-d1sgnxc0 205 2 different different JJ cord-269150-d1sgnxc0 205 3 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 205 4 , , , cord-269150-d1sgnxc0 205 5 the the DT cord-269150-d1sgnxc0 205 6 leader leader NN cord-269150-d1sgnxc0 205 7 sequence sequence NN cord-269150-d1sgnxc0 205 8 situated situate VBN cord-269150-d1sgnxc0 205 9 in in IN cord-269150-d1sgnxc0 205 10 the the DT cord-269150-d1sgnxc0 205 11 extreme extreme JJ cord-269150-d1sgnxc0 205 12 5 5 CD cord-269150-d1sgnxc0 205 13 0 0 CD cord-269150-d1sgnxc0 205 14 end end NN cord-269150-d1sgnxc0 205 15 of of IN cord-269150-d1sgnxc0 205 16 the the DT cord-269150-d1sgnxc0 205 17 genome genome NN cord-269150-d1sgnxc0 205 18 , , , cord-269150-d1sgnxc0 205 19 is be VBZ cord-269150-d1sgnxc0 205 20 composed compose VBN cord-269150-d1sgnxc0 205 21 of of IN cord-269150-d1sgnxc0 205 22 stem stem NN cord-269150-d1sgnxc0 205 23 - - HYPH cord-269150-d1sgnxc0 205 24 loops loop NNS cord-269150-d1sgnxc0 205 25 I -PRON- PRP cord-269150-d1sgnxc0 205 26 and and CC cord-269150-d1sgnxc0 205 27 II II NNP cord-269150-d1sgnxc0 205 28 . . . cord-269150-d1sgnxc0 206 1 Mutations mutation NNS cord-269150-d1sgnxc0 206 2 introduced introduce VBN cord-269150-d1sgnxc0 206 3 into into IN cord-269150-d1sgnxc0 206 4 either either DT cord-269150-d1sgnxc0 206 5 stem stem NN cord-269150-d1sgnxc0 206 6 - - HYPH cord-269150-d1sgnxc0 206 7 loop loop NN cord-269150-d1sgnxc0 207 1 I -PRON- PRP cord-269150-d1sgnxc0 207 2 or or CC cord-269150-d1sgnxc0 207 3 II II NNP cord-269150-d1sgnxc0 207 4 resulted result VBD cord-269150-d1sgnxc0 207 5 in in IN cord-269150-d1sgnxc0 207 6 non non JJ cord-269150-d1sgnxc0 207 7 - - JJ cord-269150-d1sgnxc0 207 8 viable viable JJ cord-269150-d1sgnxc0 207 9 viruses virus NNS cord-269150-d1sgnxc0 207 10 , , . cord-269150-d1sgnxc0 208 1 impaired impaired JJ cord-269150-d1sgnxc0 208 2 ( ( -LRB- cord-269150-d1sgnxc0 208 3 sense sense NN cord-269150-d1sgnxc0 208 4 and and CC cord-269150-d1sgnxc0 208 5 anti anti JJ cord-269150-d1sgnxc0 208 6 - - JJ cord-269150-d1sgnxc0 208 7 sense sense JJ cord-269150-d1sgnxc0 208 8 ) ) -RRB- cord-269150-d1sgnxc0 208 9 sgRNA sgrna NN cord-269150-d1sgnxc0 208 10 synthesis synthesis NN cord-269150-d1sgnxc0 208 11 , , , cord-269150-d1sgnxc0 208 12 but but CC cord-269150-d1sgnxc0 208 13 not not RB cord-269150-d1sgnxc0 208 14 the the DT cord-269150-d1sgnxc0 208 15 full full JJ cord-269150-d1sgnxc0 208 16 - - HYPH cord-269150-d1sgnxc0 208 17 length length NN cord-269150-d1sgnxc0 208 18 gRNA grna NN cord-269150-d1sgnxc0 208 19 synthesis synthesis NN cord-269150-d1sgnxc0 208 20 ( ( -LRB- cord-269150-d1sgnxc0 208 21 38 38 CD cord-269150-d1sgnxc0 208 22 , , , cord-269150-d1sgnxc0 208 23 44 44 CD cord-269150-d1sgnxc0 208 24 ) ) -RRB- cord-269150-d1sgnxc0 208 25 . . . cord-269150-d1sgnxc0 209 1 It -PRON- PRP cord-269150-d1sgnxc0 209 2 was be VBD cord-269150-d1sgnxc0 209 3 , , , cord-269150-d1sgnxc0 209 4 however however RB cord-269150-d1sgnxc0 209 5 , , , cord-269150-d1sgnxc0 209 6 observed observe VBD cord-269150-d1sgnxc0 209 7 in in IN cord-269150-d1sgnxc0 209 8 this this DT cord-269150-d1sgnxc0 209 9 study study NN cord-269150-d1sgnxc0 209 10 that that IN cord-269150-d1sgnxc0 209 11 silencing silencing NN cord-269150-d1sgnxc0 209 12 of of IN cord-269150-d1sgnxc0 209 13 MADP1 MADP1 NNP cord-269150-d1sgnxc0 209 14 did do VBD cord-269150-d1sgnxc0 209 15 render render VB cord-269150-d1sgnxc0 209 16 an an DT cord-269150-d1sgnxc0 209 17 impact impact NN cord-269150-d1sgnxc0 209 18 on on IN cord-269150-d1sgnxc0 209 19 gRNA grna NN cord-269150-d1sgnxc0 209 20 synthesis synthesis NN cord-269150-d1sgnxc0 209 21 , , , cord-269150-d1sgnxc0 209 22 although although IN cord-269150-d1sgnxc0 209 23 to to IN cord-269150-d1sgnxc0 209 24 a a DT cord-269150-d1sgnxc0 209 25 lesser less JJR cord-269150-d1sgnxc0 209 26 extent extent NN cord-269150-d1sgnxc0 209 27 compared compare VBN cord-269150-d1sgnxc0 209 28 to to IN cord-269150-d1sgnxc0 209 29 sgRNA sgrna NN cord-269150-d1sgnxc0 209 30 synthesis synthesis NN cord-269150-d1sgnxc0 209 31 . . . cord-269150-d1sgnxc0 210 1 This this DT cord-269150-d1sgnxc0 210 2 might may MD cord-269150-d1sgnxc0 210 3 have have VB cord-269150-d1sgnxc0 210 4 been be VBN cord-269150-d1sgnxc0 210 5 due due JJ cord-269150-d1sgnxc0 210 6 to to IN cord-269150-d1sgnxc0 210 7 a a DT cord-269150-d1sgnxc0 210 8 secondary secondary JJ cord-269150-d1sgnxc0 210 9 effect effect NN cord-269150-d1sgnxc0 210 10 of of IN cord-269150-d1sgnxc0 210 11 decreased decrease VBN cord-269150-d1sgnxc0 210 12 sgRNA sgrna NN cord-269150-d1sgnxc0 210 13 synthesis synthesis NN cord-269150-d1sgnxc0 210 14 , , , cord-269150-d1sgnxc0 210 15 as as IN cord-269150-d1sgnxc0 210 16 proteins protein NNS cord-269150-d1sgnxc0 210 17 encoded encode VBN cord-269150-d1sgnxc0 210 18 by by IN cord-269150-d1sgnxc0 210 19 sgRNAs sgrna NNS cord-269150-d1sgnxc0 210 20 may may MD cord-269150-d1sgnxc0 210 21 enhance enhance VB cord-269150-d1sgnxc0 210 22 viral viral JJ cord-269150-d1sgnxc0 210 23 RNA RNA NNP cord-269150-d1sgnxc0 210 24 synthesis synthesis NN cord-269150-d1sgnxc0 210 25 ( ( -LRB- cord-269150-d1sgnxc0 210 26 45 45 CD cord-269150-d1sgnxc0 210 27 ) ) -RRB- cord-269150-d1sgnxc0 210 28 . . . cord-269150-d1sgnxc0 211 1 The the DT cord-269150-d1sgnxc0 211 2 predicted predict VBN cord-269150-d1sgnxc0 211 3 structure structure NN cord-269150-d1sgnxc0 211 4 of of IN cord-269150-d1sgnxc0 211 5 stem stem NN cord-269150-d1sgnxc0 211 6 - - HYPH cord-269150-d1sgnxc0 211 7 loop loop NN cord-269150-d1sgnxc0 211 8 II II NNP cord-269150-d1sgnxc0 211 9 indicated indicate VBD cord-269150-d1sgnxc0 211 10 a a DT cord-269150-d1sgnxc0 211 11 strong strong JJ cord-269150-d1sgnxc0 211 12 secondary secondary JJ cord-269150-d1sgnxc0 211 13 interaction interaction NN cord-269150-d1sgnxc0 211 14 , , , cord-269150-d1sgnxc0 211 15 which which WDT cord-269150-d1sgnxc0 211 16 is be VBZ cord-269150-d1sgnxc0 211 17 highly highly RB cord-269150-d1sgnxc0 211 18 conserved conserve VBN cord-269150-d1sgnxc0 211 19 across across IN cord-269150-d1sgnxc0 211 20 different different JJ cord-269150-d1sgnxc0 211 21 groups group NNS cord-269150-d1sgnxc0 211 22 of of IN cord-269150-d1sgnxc0 211 23 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 211 24 . . . cord-269150-d1sgnxc0 212 1 The the DT cord-269150-d1sgnxc0 212 2 predicted predict VBN cord-269150-d1sgnxc0 212 3 stem stem NN cord-269150-d1sgnxc0 212 4 - - HYPH cord-269150-d1sgnxc0 212 5 loop loop NN cord-269150-d1sgnxc0 212 6 I I NNP cord-269150-d1sgnxc0 212 7 structure structure NN cord-269150-d1sgnxc0 212 8 , , , cord-269150-d1sgnxc0 212 9 on on IN cord-269150-d1sgnxc0 212 10 the the DT cord-269150-d1sgnxc0 212 11 other other JJ cord-269150-d1sgnxc0 212 12 hand hand NN cord-269150-d1sgnxc0 212 13 , , , cord-269150-d1sgnxc0 212 14 appears appear VBZ cord-269150-d1sgnxc0 212 15 to to TO cord-269150-d1sgnxc0 212 16 fold fold VB cord-269150-d1sgnxc0 212 17 into into IN cord-269150-d1sgnxc0 212 18 a a DT cord-269150-d1sgnxc0 212 19 hairpin hairpin NN cord-269150-d1sgnxc0 212 20 of of IN cord-269150-d1sgnxc0 212 21 low low JJ cord-269150-d1sgnxc0 212 22 thermodynamic thermodynamic JJ cord-269150-d1sgnxc0 212 23 stability stability NN cord-269150-d1sgnxc0 212 24 , , , cord-269150-d1sgnxc0 212 25 shows show VBZ cord-269150-d1sgnxc0 212 26 a a DT cord-269150-d1sgnxc0 212 27 wider wide JJR cord-269150-d1sgnxc0 212 28 sequence sequence NN cord-269150-d1sgnxc0 212 29 variation variation NN cord-269150-d1sgnxc0 212 30 and and CC cord-269150-d1sgnxc0 212 31 is be VBZ cord-269150-d1sgnxc0 212 32 characterized characterize VBN cord-269150-d1sgnxc0 212 33 by by IN cord-269150-d1sgnxc0 212 34 the the DT cord-269150-d1sgnxc0 212 35 presence presence NN cord-269150-d1sgnxc0 212 36 of of IN cord-269150-d1sgnxc0 212 37 bulges bulge NNS cord-269150-d1sgnxc0 212 38 , , , cord-269150-d1sgnxc0 212 39 non non JJ cord-269150-d1sgnxc0 212 40 - - JJ cord-269150-d1sgnxc0 212 41 canonical canonical JJ cord-269150-d1sgnxc0 212 42 base base NN cord-269150-d1sgnxc0 212 43 pairing pairing NN cord-269150-d1sgnxc0 212 44 as as RB cord-269150-d1sgnxc0 212 45 well well RB cord-269150-d1sgnxc0 212 46 as as IN cord-269150-d1sgnxc0 212 47 a a DT cord-269150-d1sgnxc0 212 48 prevalence prevalence NN cord-269150-d1sgnxc0 212 49 of of IN cord-269150-d1sgnxc0 212 50 A a NN cord-269150-d1sgnxc0 212 51 - - HYPH cord-269150-d1sgnxc0 212 52 U u NN cord-269150-d1sgnxc0 212 53 base base NN cord-269150-d1sgnxc0 212 54 pairing pairing NN cord-269150-d1sgnxc0 212 55 ( ( -LRB- cord-269150-d1sgnxc0 212 56 46 46 CD cord-269150-d1sgnxc0 212 57 ) ) -RRB- cord-269150-d1sgnxc0 212 58 . . . cord-269150-d1sgnxc0 213 1 It -PRON- PRP cord-269150-d1sgnxc0 213 2 has have VBZ cord-269150-d1sgnxc0 213 3 been be VBN cord-269150-d1sgnxc0 213 4 shown show VBN cord-269150-d1sgnxc0 213 5 in in IN cord-269150-d1sgnxc0 213 6 MHV MHV NNP cord-269150-d1sgnxc0 213 7 that that IN cord-269150-d1sgnxc0 213 8 the the DT cord-269150-d1sgnxc0 213 9 structural structural JJ cord-269150-d1sgnxc0 213 10 liability liability NN cord-269150-d1sgnxc0 213 11 of of IN cord-269150-d1sgnxc0 213 12 stem stem NN cord-269150-d1sgnxc0 213 13 - - HYPH cord-269150-d1sgnxc0 213 14 loop loop NN cord-269150-d1sgnxc0 214 1 I -PRON- PRP cord-269150-d1sgnxc0 214 2 is be VBZ cord-269150-d1sgnxc0 214 3 a a DT cord-269150-d1sgnxc0 214 4 critical critical JJ cord-269150-d1sgnxc0 214 5 driving drive VBG cord-269150-d1sgnxc0 214 6 force force NN cord-269150-d1sgnxc0 214 7 in in IN cord-269150-d1sgnxc0 214 8 the the DT cord-269150-d1sgnxc0 214 9 5 5 CD cord-269150-d1sgnxc0 214 10 0 0 CD cord-269150-d1sgnxc0 214 11 -and -and SYM cord-269150-d1sgnxc0 214 12 3 3 CD cord-269150-d1sgnxc0 214 13 0 0 CD cord-269150-d1sgnxc0 214 14 -UTR -utr NN cord-269150-d1sgnxc0 214 15 interaction interaction NN cord-269150-d1sgnxc0 214 16 ( ( -LRB- cord-269150-d1sgnxc0 214 17 44 44 CD cord-269150-d1sgnxc0 214 18 ) ) -RRB- cord-269150-d1sgnxc0 214 19 . . . cord-269150-d1sgnxc0 215 1 Comparing compare VBG cord-269150-d1sgnxc0 215 2 the the DT cord-269150-d1sgnxc0 215 3 predicted predict VBN cord-269150-d1sgnxc0 215 4 stemloop stemloop NN cord-269150-d1sgnxc0 215 5 I -PRON- PRP cord-269150-d1sgnxc0 215 6 structures structure NNS cord-269150-d1sgnxc0 215 7 of of IN cord-269150-d1sgnxc0 215 8 IBV IBV NNP cord-269150-d1sgnxc0 215 9 to to IN cord-269150-d1sgnxc0 215 10 SARS SARS NNP cord-269150-d1sgnxc0 215 11 - - HYPH cord-269150-d1sgnxc0 215 12 CoV CoV NNP cord-269150-d1sgnxc0 215 13 and and CC cord-269150-d1sgnxc0 215 14 HCoV HCoV NNP cord-269150-d1sgnxc0 215 15 - - HYPH cord-269150-d1sgnxc0 215 16 OC43 OC43 NNP cord-269150-d1sgnxc0 215 17 ( ( -LRB- cord-269150-d1sgnxc0 215 18 Figure figure NN cord-269150-d1sgnxc0 215 19 8B 8b NN cord-269150-d1sgnxc0 215 20 ) ) -RRB- cord-269150-d1sgnxc0 215 21 , , , cord-269150-d1sgnxc0 215 22 it -PRON- PRP cord-269150-d1sgnxc0 215 23 was be VBD cord-269150-d1sgnxc0 215 24 noted note VBN cord-269150-d1sgnxc0 215 25 that that IN cord-269150-d1sgnxc0 215 26 there there EX cord-269150-d1sgnxc0 215 27 exists exist VBZ cord-269150-d1sgnxc0 215 28 a a DT cord-269150-d1sgnxc0 215 29 difference difference NN cord-269150-d1sgnxc0 215 30 in in IN cord-269150-d1sgnxc0 215 31 the the DT cord-269150-d1sgnxc0 215 32 loop loop NN cord-269150-d1sgnxc0 215 33 sequence sequence NN cord-269150-d1sgnxc0 215 34 . . . cord-269150-d1sgnxc0 216 1 In in IN cord-269150-d1sgnxc0 216 2 addition addition NN cord-269150-d1sgnxc0 216 3 , , , cord-269150-d1sgnxc0 216 4 IBV IBV NNP cord-269150-d1sgnxc0 216 5 stem stem NN cord-269150-d1sgnxc0 216 6 - - HYPH cord-269150-d1sgnxc0 216 7 loop loop NN cord-269150-d1sgnxc0 216 8 I -PRON- PRP cord-269150-d1sgnxc0 216 9 has have VBZ cord-269150-d1sgnxc0 216 10 a a DT cord-269150-d1sgnxc0 216 11 shorter short JJR cord-269150-d1sgnxc0 216 12 stem stem NN cord-269150-d1sgnxc0 216 13 and and CC cord-269150-d1sgnxc0 216 14 the the DT cord-269150-d1sgnxc0 216 15 absence absence NN cord-269150-d1sgnxc0 216 16 of of IN cord-269150-d1sgnxc0 216 17 bulges bulge NNS cord-269150-d1sgnxc0 216 18 , , , cord-269150-d1sgnxc0 216 19 although although IN cord-269150-d1sgnxc0 216 20 the the DT cord-269150-d1sgnxc0 216 21 structure structure NN cord-269150-d1sgnxc0 216 22 may may MD cord-269150-d1sgnxc0 216 23 be be VB cord-269150-d1sgnxc0 216 24 as as RB cord-269150-d1sgnxc0 216 25 unstable unstable JJ cord-269150-d1sgnxc0 216 26 thermodynamically thermodynamically RB cord-269150-d1sgnxc0 216 27 as as IN cord-269150-d1sgnxc0 216 28 that that DT cord-269150-d1sgnxc0 216 29 of of IN cord-269150-d1sgnxc0 216 30 SARS SARS NNP cord-269150-d1sgnxc0 216 31 - - HYPH cord-269150-d1sgnxc0 216 32 CoV CoV NNP cord-269150-d1sgnxc0 216 33 and and CC cord-269150-d1sgnxc0 216 34 HCoV HCoV NNP cord-269150-d1sgnxc0 216 35 - - HYPH cord-269150-d1sgnxc0 216 36 OC43 OC43 NNP cord-269150-d1sgnxc0 216 37 , , , cord-269150-d1sgnxc0 216 38 due due IN cord-269150-d1sgnxc0 216 39 to to IN cord-269150-d1sgnxc0 216 40 the the DT cord-269150-d1sgnxc0 216 41 extremely extremely RB cord-269150-d1sgnxc0 216 42 high high JJ cord-269150-d1sgnxc0 216 43 prevalence prevalence NN cord-269150-d1sgnxc0 216 44 of of IN cord-269150-d1sgnxc0 216 45 weak weak JJ cord-269150-d1sgnxc0 216 46 base base NN cord-269150-d1sgnxc0 216 47 pairing pair VBG cord-269150-d1sgnxc0 216 48 between between IN cord-269150-d1sgnxc0 216 49 A a NN cord-269150-d1sgnxc0 216 50 and and CC cord-269150-d1sgnxc0 216 51 U u NN cord-269150-d1sgnxc0 216 52 as as RB cord-269150-d1sgnxc0 216 53 well well RB cord-269150-d1sgnxc0 216 54 as as IN cord-269150-d1sgnxc0 216 55 the the DT cord-269150-d1sgnxc0 216 56 presence presence NN cord-269150-d1sgnxc0 216 57 of of IN cord-269150-d1sgnxc0 216 58 a a DT cord-269150-d1sgnxc0 216 59 non non JJ cord-269150-d1sgnxc0 216 60 - - JJ cord-269150-d1sgnxc0 216 61 canonical canonical JJ cord-269150-d1sgnxc0 216 62 base base NN cord-269150-d1sgnxc0 216 63 pair pair NN cord-269150-d1sgnxc0 216 64 at at IN cord-269150-d1sgnxc0 216 65 the the DT cord-269150-d1sgnxc0 216 66 base base NN cord-269150-d1sgnxc0 216 67 of of IN cord-269150-d1sgnxc0 216 68 the the DT cord-269150-d1sgnxc0 216 69 stem stem NN cord-269150-d1sgnxc0 216 70 ( ( -LRB- cord-269150-d1sgnxc0 216 71 46 46 CD cord-269150-d1sgnxc0 216 72 ) ) -RRB- cord-269150-d1sgnxc0 216 73 . . . cord-269150-d1sgnxc0 217 1 Hence hence RB cord-269150-d1sgnxc0 217 2 , , , cord-269150-d1sgnxc0 217 3 sequence sequence NN cord-269150-d1sgnxc0 217 4 and and CC cord-269150-d1sgnxc0 217 5 structural structural JJ cord-269150-d1sgnxc0 217 6 differences difference NNS cord-269150-d1sgnxc0 217 7 may may MD cord-269150-d1sgnxc0 217 8 be be VB cord-269150-d1sgnxc0 217 9 one one CD cord-269150-d1sgnxc0 217 10 of of IN cord-269150-d1sgnxc0 217 11 the the DT cord-269150-d1sgnxc0 217 12 possible possible JJ cord-269150-d1sgnxc0 217 13 explanations explanation NNS cord-269150-d1sgnxc0 217 14 for for IN cord-269150-d1sgnxc0 217 15 the the DT cord-269150-d1sgnxc0 217 16 observation observation NN cord-269150-d1sgnxc0 217 17 of of IN cord-269150-d1sgnxc0 217 18 a a DT cord-269150-d1sgnxc0 217 19 weaker weak JJR cord-269150-d1sgnxc0 217 20 binding binding NN cord-269150-d1sgnxc0 217 21 between between IN cord-269150-d1sgnxc0 217 22 MADP1 MADP1 NNP cord-269150-d1sgnxc0 217 23 and and CC cord-269150-d1sgnxc0 217 24 SARS SARS NNP cord-269150-d1sgnxc0 217 25 - - HYPH cord-269150-d1sgnxc0 217 26 CoV CoV NNP cord-269150-d1sgnxc0 217 27 or or CC cord-269150-d1sgnxc0 217 28 HCoV HCoV NNP cord-269150-d1sgnxc0 217 29 - - HYPH cord-269150-d1sgnxc0 217 30 OC43 OC43 NNP cord-269150-d1sgnxc0 217 31 5 5 CD cord-269150-d1sgnxc0 217 32 0 0 CD cord-269150-d1sgnxc0 217 33 -UTR -utr NN cord-269150-d1sgnxc0 217 34 than than IN cord-269150-d1sgnxc0 217 35 with with IN cord-269150-d1sgnxc0 217 36 IBV IBV NNP cord-269150-d1sgnxc0 217 37 5 5 CD cord-269150-d1sgnxc0 217 38 0 0 CD cord-269150-d1sgnxc0 217 39 -UTR -utr NN cord-269150-d1sgnxc0 217 40 . . . cord-269150-d1sgnxc0 218 1 In in IN cord-269150-d1sgnxc0 218 2 fact fact NN cord-269150-d1sgnxc0 218 3 , , , cord-269150-d1sgnxc0 218 4 the the DT cord-269150-d1sgnxc0 218 5 relatively relatively RB cord-269150-d1sgnxc0 218 6 weaker weak JJR cord-269150-d1sgnxc0 218 7 binding binding NN cord-269150-d1sgnxc0 218 8 of of IN cord-269150-d1sgnxc0 218 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 218 10 to to IN cord-269150-d1sgnxc0 218 11 the the DT cord-269150-d1sgnxc0 218 12 stem stem NN cord-269150-d1sgnxc0 218 13 - - HYPH cord-269150-d1sgnxc0 218 14 loop loop NN cord-269150-d1sgnxc0 219 1 I -PRON- PRP cord-269150-d1sgnxc0 219 2 restoring restore VBG cord-269150-d1sgnxc0 219 3 mutant mutant JJ cord-269150-d1sgnxc0 219 4 ( ( -LRB- cord-269150-d1sgnxc0 219 5 5 5 CD cord-269150-d1sgnxc0 219 6 0 0 CD cord-269150-d1sgnxc0 219 7 -UTRÁ2M2 -utrá2m2 ADD cord-269150-d1sgnxc0 219 8 ) ) -RRB- cord-269150-d1sgnxc0 220 1 demonstrated demonstrate VBN cord-269150-d1sgnxc0 220 2 in in IN cord-269150-d1sgnxc0 220 3 this this DT cord-269150-d1sgnxc0 220 4 study study NN cord-269150-d1sgnxc0 220 5 supports support VBZ cord-269150-d1sgnxc0 220 6 that that IN cord-269150-d1sgnxc0 220 7 primary primary JJ cord-269150-d1sgnxc0 220 8 sequences sequence NNS cord-269150-d1sgnxc0 220 9 in in IN cord-269150-d1sgnxc0 220 10 the the DT cord-269150-d1sgnxc0 220 11 5 5 CD cord-269150-d1sgnxc0 220 12 0 0 CD cord-269150-d1sgnxc0 220 13 -UTR -utr NN cord-269150-d1sgnxc0 220 14 may may MD cord-269150-d1sgnxc0 220 15 play play VB cord-269150-d1sgnxc0 220 16 a a DT cord-269150-d1sgnxc0 220 17 certain certain JJ cord-269150-d1sgnxc0 220 18 role role NN cord-269150-d1sgnxc0 220 19 in in IN cord-269150-d1sgnxc0 220 20 this this DT cord-269150-d1sgnxc0 220 21 interaction interaction NN cord-269150-d1sgnxc0 220 22 . . . cord-269150-d1sgnxc0 221 1 Most Most JJS cord-269150-d1sgnxc0 221 2 studies study NNS cord-269150-d1sgnxc0 221 3 on on IN cord-269150-d1sgnxc0 221 4 host host NN cord-269150-d1sgnxc0 221 5 involvement involvement NN cord-269150-d1sgnxc0 221 6 in in IN cord-269150-d1sgnxc0 221 7 coronaviral coronaviral NNP cord-269150-d1sgnxc0 221 8 RNA RNA NNP cord-269150-d1sgnxc0 221 9 synthesis synthesis NN cord-269150-d1sgnxc0 221 10 were be VBD cord-269150-d1sgnxc0 221 11 so so RB cord-269150-d1sgnxc0 221 12 far far RB cord-269150-d1sgnxc0 221 13 performed perform VBN cord-269150-d1sgnxc0 221 14 using use VBG cord-269150-d1sgnxc0 221 15 MHV MHV NNP cord-269150-d1sgnxc0 221 16 ( ( -LRB- cord-269150-d1sgnxc0 221 17 29 29 CD cord-269150-d1sgnxc0 221 18 ) ) -RRB- cord-269150-d1sgnxc0 221 19 ( ( -LRB- cord-269150-d1sgnxc0 221 20 30 30 CD cord-269150-d1sgnxc0 221 21 ) ) -RRB- cord-269150-d1sgnxc0 221 22 ( ( -LRB- cord-269150-d1sgnxc0 221 23 31 31 CD cord-269150-d1sgnxc0 221 24 ) ) -RRB- cord-269150-d1sgnxc0 221 25 42 42 CD cord-269150-d1sgnxc0 221 26 , , , cord-269150-d1sgnxc0 221 27 43 43 CD cord-269150-d1sgnxc0 221 28 ) ) -RRB- cord-269150-d1sgnxc0 221 29 . . . cord-269150-d1sgnxc0 222 1 Identification identification NN cord-269150-d1sgnxc0 222 2 of of IN cord-269150-d1sgnxc0 222 3 the the DT cord-269150-d1sgnxc0 222 4 interaction interaction NN cord-269150-d1sgnxc0 222 5 between between IN cord-269150-d1sgnxc0 222 6 MADP1 MADP1 NNP cord-269150-d1sgnxc0 222 7 and and CC cord-269150-d1sgnxc0 222 8 5 5 CD cord-269150-d1sgnxc0 222 9 0 0 CD cord-269150-d1sgnxc0 222 10 -UTR -utr NN cord-269150-d1sgnxc0 222 11 as as RB cord-269150-d1sgnxc0 222 12 well well RB cord-269150-d1sgnxc0 222 13 as as IN cord-269150-d1sgnxc0 222 14 its -PRON- PRP$ cord-269150-d1sgnxc0 222 15 functional functional JJ cord-269150-d1sgnxc0 222 16 involvement involvement NN cord-269150-d1sgnxc0 222 17 in in IN cord-269150-d1sgnxc0 222 18 coronavirus coronavirus NN cord-269150-d1sgnxc0 222 19 replication replication NN cord-269150-d1sgnxc0 222 20 , , , cord-269150-d1sgnxc0 222 21 in in IN cord-269150-d1sgnxc0 222 22 this this DT cord-269150-d1sgnxc0 222 23 study study NN cord-269150-d1sgnxc0 222 24 , , , cord-269150-d1sgnxc0 222 25 therefore therefore RB cord-269150-d1sgnxc0 222 26 may may MD cord-269150-d1sgnxc0 222 27 represent represent VB cord-269150-d1sgnxc0 222 28 the the DT cord-269150-d1sgnxc0 222 29 first first JJ cord-269150-d1sgnxc0 222 30 host host NN cord-269150-d1sgnxc0 222 31 protein protein NN cord-269150-d1sgnxc0 222 32 identified identify VBN cord-269150-d1sgnxc0 222 33 to to TO cord-269150-d1sgnxc0 222 34 play play VB cord-269150-d1sgnxc0 222 35 a a DT cord-269150-d1sgnxc0 222 36 role role NN cord-269150-d1sgnxc0 222 37 in in IN cord-269150-d1sgnxc0 222 38 viral viral JJ cord-269150-d1sgnxc0 222 39 RNA RNA NNP cord-269150-d1sgnxc0 222 40 synthesis synthesis NN cord-269150-d1sgnxc0 222 41 by by IN cord-269150-d1sgnxc0 222 42 interacting interact VBG cord-269150-d1sgnxc0 222 43 with with IN cord-269150-d1sgnxc0 222 44 the the DT cord-269150-d1sgnxc0 222 45 5 5 CD cord-269150-d1sgnxc0 222 46 0 0 CD cord-269150-d1sgnxc0 222 47 -UTR -utr NN cord-269150-d1sgnxc0 222 48 of of IN cord-269150-d1sgnxc0 222 49 the the DT cord-269150-d1sgnxc0 222 50 viral viral JJ cord-269150-d1sgnxc0 222 51 RNA RNA NNP cord-269150-d1sgnxc0 222 52 in in IN cord-269150-d1sgnxc0 222 53 a a DT cord-269150-d1sgnxc0 222 54 gammacoronavirus gammacoronavirus NN cord-269150-d1sgnxc0 222 55 . . . cord-269150-d1sgnxc0 223 1 The the DT cord-269150-d1sgnxc0 223 2 functional functional JJ cord-269150-d1sgnxc0 223 3 implication implication NN cord-269150-d1sgnxc0 223 4 of of IN cord-269150-d1sgnxc0 223 5 the the DT cord-269150-d1sgnxc0 223 6 interaction interaction NN cord-269150-d1sgnxc0 223 7 between between IN cord-269150-d1sgnxc0 223 8 MADP1 MADP1 NNP cord-269150-d1sgnxc0 223 9 and and CC cord-269150-d1sgnxc0 223 10 IBV IBV NNP cord-269150-d1sgnxc0 223 11 5 5 CD cord-269150-d1sgnxc0 223 12 0 0 CD cord-269150-d1sgnxc0 223 13 -UTR -utr NN cord-269150-d1sgnxc0 223 14 may may MD cord-269150-d1sgnxc0 223 15 be be VB cord-269150-d1sgnxc0 223 16 extended extend VBN cord-269150-d1sgnxc0 223 17 to to IN cord-269150-d1sgnxc0 223 18 the the DT cord-269150-d1sgnxc0 223 19 rest rest NN cord-269150-d1sgnxc0 223 20 of of IN cord-269150-d1sgnxc0 223 21 the the DT cord-269150-d1sgnxc0 223 22 members member NNS cord-269150-d1sgnxc0 223 23 of of IN cord-269150-d1sgnxc0 223 24 the the DT cord-269150-d1sgnxc0 223 25 coronavirus coronavirus NN cord-269150-d1sgnxc0 223 26 family family NN cord-269150-d1sgnxc0 223 27 . . . cord-269150-d1sgnxc0 224 1 In in IN cord-269150-d1sgnxc0 224 2 the the DT cord-269150-d1sgnxc0 224 3 case case NN cord-269150-d1sgnxc0 224 4 of of IN cord-269150-d1sgnxc0 224 5 hnRNP hnrnp DT cord-269150-d1sgnxc0 224 6 A1 A1 NNP cord-269150-d1sgnxc0 224 7 , , , cord-269150-d1sgnxc0 224 8 it -PRON- PRP cord-269150-d1sgnxc0 224 9 was be VBD cord-269150-d1sgnxc0 224 10 initially initially RB cord-269150-d1sgnxc0 224 11 reported report VBN cord-269150-d1sgnxc0 224 12 to to TO cord-269150-d1sgnxc0 224 13 be be VB cord-269150-d1sgnxc0 224 14 functionally functionally RB cord-269150-d1sgnxc0 224 15 important important JJ cord-269150-d1sgnxc0 224 16 for for IN cord-269150-d1sgnxc0 224 17 viral viral JJ cord-269150-d1sgnxc0 224 18 RNA RNA NNP cord-269150-d1sgnxc0 224 19 synthesis synthesis NN cord-269150-d1sgnxc0 224 20 for for IN cord-269150-d1sgnxc0 224 21 group group NN cord-269150-d1sgnxc0 224 22 II II NNP cord-269150-d1sgnxc0 224 23 virus virus NN cord-269150-d1sgnxc0 224 24 MHV MHV NNP cord-269150-d1sgnxc0 224 25 ( ( -LRB- cord-269150-d1sgnxc0 224 26 29 29 CD cord-269150-d1sgnxc0 224 27 , , , cord-269150-d1sgnxc0 224 28 30 30 CD cord-269150-d1sgnxc0 224 29 ) ) -RRB- cord-269150-d1sgnxc0 224 30 . . . cord-269150-d1sgnxc0 225 1 Subsequently subsequently RB cord-269150-d1sgnxc0 225 2 , , , cord-269150-d1sgnxc0 225 3 its -PRON- PRP$ cord-269150-d1sgnxc0 225 4 involvement involvement NN cord-269150-d1sgnxc0 225 5 in in IN cord-269150-d1sgnxc0 225 6 viral viral JJ cord-269150-d1sgnxc0 225 7 RNA RNA NNP cord-269150-d1sgnxc0 225 8 synthesis synthesis NN cord-269150-d1sgnxc0 225 9 was be VBD cord-269150-d1sgnxc0 225 10 also also RB cord-269150-d1sgnxc0 225 11 confirmed confirm VBN cord-269150-d1sgnxc0 225 12 in in IN cord-269150-d1sgnxc0 225 13 TGEV TGEV NNP cord-269150-d1sgnxc0 225 14 , , , cord-269150-d1sgnxc0 225 15 a a DT cord-269150-d1sgnxc0 225 16 group group NN cord-269150-d1sgnxc0 225 17 I -PRON- PRP cord-269150-d1sgnxc0 225 18 coronavirus coronavirus NN cord-269150-d1sgnxc0 225 19 ( ( -LRB- cord-269150-d1sgnxc0 225 20 32 32 CD cord-269150-d1sgnxc0 225 21 ) ) -RRB- cord-269150-d1sgnxc0 225 22 . . . cord-269150-d1sgnxc0 226 1 In in IN cord-269150-d1sgnxc0 226 2 this this DT cord-269150-d1sgnxc0 226 3 study study NN cord-269150-d1sgnxc0 226 4 , , , cord-269150-d1sgnxc0 226 5 we -PRON- PRP cord-269150-d1sgnxc0 226 6 have have VBP cord-269150-d1sgnxc0 226 7 shown show VBN cord-269150-d1sgnxc0 226 8 that that IN cord-269150-d1sgnxc0 226 9 betacoronaviruses betacoronaviruses NNP cord-269150-d1sgnxc0 226 10 HCoV HCoV NNP cord-269150-d1sgnxc0 226 11 - - HYPH cord-269150-d1sgnxc0 226 12 OC43 OC43 NNP cord-269150-d1sgnxc0 226 13 , , , cord-269150-d1sgnxc0 226 14 SARS SARS NNP cord-269150-d1sgnxc0 226 15 - - HYPH cord-269150-d1sgnxc0 226 16 CoV CoV NNP cord-269150-d1sgnxc0 226 17 and and CC cord-269150-d1sgnxc0 226 18 gammacoronavirus gammacoronavirus NNP cord-269150-d1sgnxc0 226 19 IBV IBV NNP cord-269150-d1sgnxc0 226 20 can can MD cord-269150-d1sgnxc0 226 21 bind bind VB cord-269150-d1sgnxc0 226 22 to to IN cord-269150-d1sgnxc0 226 23 MADP1 MADP1 NNP cord-269150-d1sgnxc0 226 24 , , , cord-269150-d1sgnxc0 226 25 albeit albeit IN cord-269150-d1sgnxc0 226 26 with with IN cord-269150-d1sgnxc0 226 27 different different JJ cord-269150-d1sgnxc0 226 28 affinities affinity NNS cord-269150-d1sgnxc0 226 29 . . . cord-269150-d1sgnxc0 227 1 Due due IN cord-269150-d1sgnxc0 227 2 to to IN cord-269150-d1sgnxc0 227 3 the the DT cord-269150-d1sgnxc0 227 4 lack lack NN cord-269150-d1sgnxc0 227 5 of of IN cord-269150-d1sgnxc0 227 6 a a DT cord-269150-d1sgnxc0 227 7 high high JJ cord-269150-d1sgnxc0 227 8 containment containment NN cord-269150-d1sgnxc0 227 9 facility facility NN cord-269150-d1sgnxc0 227 10 , , , cord-269150-d1sgnxc0 227 11 the the DT cord-269150-d1sgnxc0 227 12 functional functional JJ cord-269150-d1sgnxc0 227 13 implication implication NN cord-269150-d1sgnxc0 227 14 of of IN cord-269150-d1sgnxc0 227 15 the the DT cord-269150-d1sgnxc0 227 16 relatively relatively RB cord-269150-d1sgnxc0 227 17 weaker weak JJR cord-269150-d1sgnxc0 227 18 interaction interaction NN cord-269150-d1sgnxc0 227 19 between between IN cord-269150-d1sgnxc0 227 20 SARS SARS NNP cord-269150-d1sgnxc0 227 21 - - HYPH cord-269150-d1sgnxc0 227 22 CoV CoV NNP cord-269150-d1sgnxc0 227 23 5 5 CD cord-269150-d1sgnxc0 227 24 0 0 CD cord-269150-d1sgnxc0 227 25 -UTR -utr NN cord-269150-d1sgnxc0 227 26 and and CC cord-269150-d1sgnxc0 227 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 227 28 was be VBD cord-269150-d1sgnxc0 227 29 not not RB cord-269150-d1sgnxc0 227 30 further further RB cord-269150-d1sgnxc0 227 31 studied study VBN cord-269150-d1sgnxc0 227 32 . . . cord-269150-d1sgnxc0 228 1 It -PRON- PRP cord-269150-d1sgnxc0 228 2 is be VBZ cord-269150-d1sgnxc0 228 3 , , , cord-269150-d1sgnxc0 228 4 therefore therefore RB cord-269150-d1sgnxc0 228 5 , , , cord-269150-d1sgnxc0 228 6 yet yet RB cord-269150-d1sgnxc0 228 7 to to TO cord-269150-d1sgnxc0 228 8 be be VB cord-269150-d1sgnxc0 228 9 demonstrated demonstrate VBN cord-269150-d1sgnxc0 228 10 if if IN cord-269150-d1sgnxc0 228 11 this this DT cord-269150-d1sgnxc0 228 12 weaker weak JJR cord-269150-d1sgnxc0 228 13 binding bind VBG cord-269150-d1sgnxc0 228 14 dictates dictate VBZ cord-269150-d1sgnxc0 228 15 less less JJR cord-269150-d1sgnxc0 228 16 dependency dependency NN cord-269150-d1sgnxc0 228 17 on on IN cord-269150-d1sgnxc0 228 18 MADP1 MADP1 NNP cord-269150-d1sgnxc0 228 19 in in IN cord-269150-d1sgnxc0 228 20 SARS SARS NNP cord-269150-d1sgnxc0 228 21 - - HYPH cord-269150-d1sgnxc0 228 22 CoV CoV NNP cord-269150-d1sgnxc0 228 23 RNA RNA NNP cord-269150-d1sgnxc0 228 24 replication replication NN cord-269150-d1sgnxc0 228 25 and and CC cord-269150-d1sgnxc0 228 26 infectivity infectivity NN cord-269150-d1sgnxc0 228 27 . . . cord-269150-d1sgnxc0 229 1 Current current JJ cord-269150-d1sgnxc0 229 2 evidence evidence NN cord-269150-d1sgnxc0 229 3 indicates indicate VBZ cord-269150-d1sgnxc0 229 4 that that IN cord-269150-d1sgnxc0 229 5 MADP1 MADP1 NNP cord-269150-d1sgnxc0 229 6 is be VBZ cord-269150-d1sgnxc0 229 7 compartmentalized compartmentalize VBN cord-269150-d1sgnxc0 229 8 in in IN cord-269150-d1sgnxc0 229 9 the the DT cord-269150-d1sgnxc0 229 10 nuclei nucleus NNS cord-269150-d1sgnxc0 229 11 of of IN cord-269150-d1sgnxc0 229 12 cultured cultured JJ cord-269150-d1sgnxc0 229 13 cells cell NNS cord-269150-d1sgnxc0 229 14 ( ( -LRB- cord-269150-d1sgnxc0 229 15 35 35 CD cord-269150-d1sgnxc0 229 16 ) ) -RRB- cord-269150-d1sgnxc0 229 17 , , , cord-269150-d1sgnxc0 229 18 markedly markedly RB cord-269150-d1sgnxc0 229 19 differing differ VBG cord-269150-d1sgnxc0 229 20 from from IN cord-269150-d1sgnxc0 229 21 the the DT cord-269150-d1sgnxc0 229 22 cytoplasmic cytoplasmic JJ cord-269150-d1sgnxc0 229 23 , , , cord-269150-d1sgnxc0 229 24 perinuclear perinuclear NNP cord-269150-d1sgnxc0 229 25 localization localization NN cord-269150-d1sgnxc0 229 26 of of IN cord-269150-d1sgnxc0 229 27 the the DT cord-269150-d1sgnxc0 229 28 coronavirus coronavirus NN cord-269150-d1sgnxc0 229 29 RTCs rtc NNS cord-269150-d1sgnxc0 229 30 ( ( -LRB- cord-269150-d1sgnxc0 229 31 47 47 CD cord-269150-d1sgnxc0 229 32 ) ) -RRB- cord-269150-d1sgnxc0 229 33 ( ( -LRB- cord-269150-d1sgnxc0 229 34 48 48 CD cord-269150-d1sgnxc0 229 35 ) ) -RRB- cord-269150-d1sgnxc0 229 36 ( ( -LRB- cord-269150-d1sgnxc0 229 37 49 49 CD cord-269150-d1sgnxc0 229 38 ) ) -RRB- cord-269150-d1sgnxc0 229 39 . . . cord-269150-d1sgnxc0 230 1 As as IN cord-269150-d1sgnxc0 230 2 there there EX cord-269150-d1sgnxc0 230 3 was be VBD cord-269150-d1sgnxc0 230 4 no no DT cord-269150-d1sgnxc0 230 5 report report NN cord-269150-d1sgnxc0 230 6 on on IN cord-269150-d1sgnxc0 230 7 the the DT cord-269150-d1sgnxc0 230 8 possibility possibility NN cord-269150-d1sgnxc0 230 9 of of IN cord-269150-d1sgnxc0 230 10 MADP1 MADP1 NNP cord-269150-d1sgnxc0 230 11 shuttling shuttle VBG cord-269150-d1sgnxc0 230 12 between between IN cord-269150-d1sgnxc0 230 13 the the DT cord-269150-d1sgnxc0 230 14 nucleus nucleus NN cord-269150-d1sgnxc0 230 15 and and CC cord-269150-d1sgnxc0 230 16 cytoplasm cytoplasm JJ cord-269150-d1sgnxc0 230 17 , , , cord-269150-d1sgnxc0 230 18 our -PRON- PRP$ cord-269150-d1sgnxc0 230 19 observation observation NN cord-269150-d1sgnxc0 230 20 using use VBG cord-269150-d1sgnxc0 230 21 indirect indirect JJ cord-269150-d1sgnxc0 230 22 immunofluorescence immunofluorescence NN cord-269150-d1sgnxc0 230 23 that that IN cord-269150-d1sgnxc0 230 24 over over RB cord-269150-d1sgnxc0 230 25 - - HYPH cord-269150-d1sgnxc0 230 26 expressed express VBN cord-269150-d1sgnxc0 230 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 230 28 upon upon IN cord-269150-d1sgnxc0 230 29 IBV IBV NNP cord-269150-d1sgnxc0 230 30 infection infection NN cord-269150-d1sgnxc0 230 31 became become VBD cord-269150-d1sgnxc0 230 32 partially partially RB cord-269150-d1sgnxc0 230 33 localized localize VBN cord-269150-d1sgnxc0 230 34 in in IN cord-269150-d1sgnxc0 230 35 the the DT cord-269150-d1sgnxc0 230 36 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 230 37 may may MD cord-269150-d1sgnxc0 230 38 represent represent VB cord-269150-d1sgnxc0 230 39 a a DT cord-269150-d1sgnxc0 230 40 first first JJ cord-269150-d1sgnxc0 230 41 report report NN cord-269150-d1sgnxc0 230 42 that that IN cord-269150-d1sgnxc0 230 43 MADP1 MADP1 NNP cord-269150-d1sgnxc0 230 44 could could MD cord-269150-d1sgnxc0 230 45 be be VB cord-269150-d1sgnxc0 230 46 localized localize VBN cord-269150-d1sgnxc0 230 47 outside outside IN cord-269150-d1sgnxc0 230 48 the the DT cord-269150-d1sgnxc0 230 49 nucleus nucleus NN cord-269150-d1sgnxc0 230 50 . . . cord-269150-d1sgnxc0 231 1 This this DT cord-269150-d1sgnxc0 231 2 could could MD cord-269150-d1sgnxc0 231 3 have have VB cord-269150-d1sgnxc0 231 4 been be VBN cord-269150-d1sgnxc0 231 5 achieved achieve VBN cord-269150-d1sgnxc0 231 6 with with IN cord-269150-d1sgnxc0 231 7 either either CC cord-269150-d1sgnxc0 231 8 an an DT cord-269150-d1sgnxc0 231 9 existing exist VBG cord-269150-d1sgnxc0 231 10 shuttling shuttle VBG cord-269150-d1sgnxc0 231 11 mechanism mechanism NN cord-269150-d1sgnxc0 231 12 used use VBN cord-269150-d1sgnxc0 231 13 by by IN cord-269150-d1sgnxc0 231 14 a a DT cord-269150-d1sgnxc0 231 15 nuclear nuclear JJ cord-269150-d1sgnxc0 231 16 protein protein NN cord-269150-d1sgnxc0 231 17 or or CC cord-269150-d1sgnxc0 231 18 the the DT cord-269150-d1sgnxc0 231 19 assistance assistance NN cord-269150-d1sgnxc0 231 20 of of IN cord-269150-d1sgnxc0 231 21 viral viral JJ cord-269150-d1sgnxc0 231 22 factors factor NNS cord-269150-d1sgnxc0 231 23 . . . cord-269150-d1sgnxc0 232 1 For for IN cord-269150-d1sgnxc0 232 2 example example NN cord-269150-d1sgnxc0 232 3 , , , cord-269150-d1sgnxc0 232 4 IBV IBV NNP cord-269150-d1sgnxc0 232 5 N N NNP cord-269150-d1sgnxc0 232 6 protein protein NN cord-269150-d1sgnxc0 232 7 is be VBZ cord-269150-d1sgnxc0 232 8 known know VBN cord-269150-d1sgnxc0 232 9 to to TO cord-269150-d1sgnxc0 232 10 enter enter VB cord-269150-d1sgnxc0 232 11 the the DT cord-269150-d1sgnxc0 232 12 nucleus nucleus NN cord-269150-d1sgnxc0 232 13 while while IN cord-269150-d1sgnxc0 232 14 maintaining maintain VBG cord-269150-d1sgnxc0 232 15 a a DT cord-269150-d1sgnxc0 232 16 predominantly predominantly RB cord-269150-d1sgnxc0 232 17 cytoplasmic cytoplasmic JJ cord-269150-d1sgnxc0 232 18 localization localization NN cord-269150-d1sgnxc0 232 19 ( ( -LRB- cord-269150-d1sgnxc0 232 20 50 50 CD cord-269150-d1sgnxc0 232 21 , , , cord-269150-d1sgnxc0 232 22 51 51 CD cord-269150-d1sgnxc0 232 23 ) ) -RRB- cord-269150-d1sgnxc0 232 24 . . . cord-269150-d1sgnxc0 233 1 Alternatively alternatively RB cord-269150-d1sgnxc0 233 2 , , , cord-269150-d1sgnxc0 233 3 binding bind VBG cord-269150-d1sgnxc0 233 4 of of IN cord-269150-d1sgnxc0 233 5 viral viral JJ cord-269150-d1sgnxc0 233 6 RNA RNA NNP cord-269150-d1sgnxc0 233 7 may may MD cord-269150-d1sgnxc0 233 8 partially partially RB cord-269150-d1sgnxc0 233 9 retain retain VB cord-269150-d1sgnxc0 233 10 the the DT cord-269150-d1sgnxc0 233 11 newly newly RB cord-269150-d1sgnxc0 233 12 synthesized synthesize VBN cord-269150-d1sgnxc0 233 13 MADP1 MADP1 NNP cord-269150-d1sgnxc0 233 14 in in IN cord-269150-d1sgnxc0 233 15 the the DT cord-269150-d1sgnxc0 233 16 cytoplasm cytoplasm NN cord-269150-d1sgnxc0 233 17 , , , cord-269150-d1sgnxc0 233 18 as as IN cord-269150-d1sgnxc0 233 19 observed observe VBN cord-269150-d1sgnxc0 233 20 in in IN cord-269150-d1sgnxc0 233 21 this this DT cord-269150-d1sgnxc0 233 22 study study NN cord-269150-d1sgnxc0 233 23 . . . cord-269150-d1sgnxc0 234 1 It -PRON- PRP cord-269150-d1sgnxc0 234 2 was be VBD cord-269150-d1sgnxc0 234 3 observed observe VBN cord-269150-d1sgnxc0 234 4 that that IN cord-269150-d1sgnxc0 234 5 over over IN cord-269150-d1sgnxc0 234 6 - - HYPH cord-269150-d1sgnxc0 234 7 expression expression NN cord-269150-d1sgnxc0 234 8 of of IN cord-269150-d1sgnxc0 234 9 Flag Flag NNP cord-269150-d1sgnxc0 234 10 - - HYPH cord-269150-d1sgnxc0 234 11 tagged tagged NNP cord-269150-d1sgnxc0 234 12 MADP1 MADP1 NNP cord-269150-d1sgnxc0 234 13 was be VBD cord-269150-d1sgnxc0 234 14 unable unable JJ cord-269150-d1sgnxc0 234 15 to to TO cord-269150-d1sgnxc0 234 16 fully fully RB cord-269150-d1sgnxc0 234 17 restore restore VB cord-269150-d1sgnxc0 234 18 IBV IBV NNP cord-269150-d1sgnxc0 234 19 infection infection NN cord-269150-d1sgnxc0 234 20 in in IN cord-269150-d1sgnxc0 234 21 MADP1-knockdown MADP1-knockdown NNP cord-269150-d1sgnxc0 234 22 cells cell NNS cord-269150-d1sgnxc0 234 23 , , , cord-269150-d1sgnxc0 234 24 even even RB cord-269150-d1sgnxc0 234 25 though though IN cord-269150-d1sgnxc0 234 26 the the DT cord-269150-d1sgnxc0 234 27 expression expression NN cord-269150-d1sgnxc0 234 28 level level NN cord-269150-d1sgnxc0 234 29 of of IN cord-269150-d1sgnxc0 234 30 the the DT cord-269150-d1sgnxc0 234 31 introduced introduce VBN cord-269150-d1sgnxc0 234 32 MADP1 MADP1 NNP cord-269150-d1sgnxc0 234 33 construct construct NN cord-269150-d1sgnxc0 234 34 far far RB cord-269150-d1sgnxc0 234 35 surpassed surpass VBN cord-269150-d1sgnxc0 234 36 the the DT cord-269150-d1sgnxc0 234 37 endogenous endogenous JJ cord-269150-d1sgnxc0 234 38 level level NN cord-269150-d1sgnxc0 234 39 , , , cord-269150-d1sgnxc0 234 40 as as IN cord-269150-d1sgnxc0 234 41 observed observe VBN cord-269150-d1sgnxc0 234 42 by by IN cord-269150-d1sgnxc0 234 43 western western JJ cord-269150-d1sgnxc0 234 44 blot blot NN cord-269150-d1sgnxc0 234 45 analysis analysis NN cord-269150-d1sgnxc0 234 46 . . . cord-269150-d1sgnxc0 235 1 Considering consider VBG cord-269150-d1sgnxc0 235 2 the the DT cord-269150-d1sgnxc0 235 3 fact fact NN cord-269150-d1sgnxc0 235 4 that that IN cord-269150-d1sgnxc0 235 5 only only RB cord-269150-d1sgnxc0 235 6 30 30 CD cord-269150-d1sgnxc0 235 7 % % NN cord-269150-d1sgnxc0 235 8 of of IN cord-269150-d1sgnxc0 235 9 cells cell NNS cord-269150-d1sgnxc0 235 10 were be VBD cord-269150-d1sgnxc0 235 11 transfected transfecte VBN cord-269150-d1sgnxc0 235 12 and and CC cord-269150-d1sgnxc0 235 13 over over RB cord-269150-d1sgnxc0 235 14 - - HYPH cord-269150-d1sgnxc0 235 15 expressed express VBN cord-269150-d1sgnxc0 235 16 MADP1 MADP1 NNP cord-269150-d1sgnxc0 235 17 protein protein NN cord-269150-d1sgnxc0 235 18 despite despite IN cord-269150-d1sgnxc0 235 19 the the DT cord-269150-d1sgnxc0 235 20 presence presence NN cord-269150-d1sgnxc0 235 21 of of IN cord-269150-d1sgnxc0 235 22 a a DT cord-269150-d1sgnxc0 235 23 higher high JJR cord-269150-d1sgnxc0 235 24 level level NN cord-269150-d1sgnxc0 235 25 of of IN cord-269150-d1sgnxc0 235 26 the the DT cord-269150-d1sgnxc0 235 27 protein protein NN cord-269150-d1sgnxc0 235 28 in in IN cord-269150-d1sgnxc0 235 29 the the DT cord-269150-d1sgnxc0 235 30 transfected transfecte VBN cord-269150-d1sgnxc0 235 31 cells cell NNS cord-269150-d1sgnxc0 235 32 , , , cord-269150-d1sgnxc0 235 33 it -PRON- PRP cord-269150-d1sgnxc0 235 34 is be VBZ cord-269150-d1sgnxc0 235 35 understandable understandable JJ cord-269150-d1sgnxc0 235 36 that that IN cord-269150-d1sgnxc0 235 37 the the DT cord-269150-d1sgnxc0 235 38 expression expression NN cord-269150-d1sgnxc0 235 39 of of IN cord-269150-d1sgnxc0 235 40 viral viral JJ cord-269150-d1sgnxc0 235 41 proteins protein NNS cord-269150-d1sgnxc0 235 42 could could MD cord-269150-d1sgnxc0 235 43 not not RB cord-269150-d1sgnxc0 235 44 be be VB cord-269150-d1sgnxc0 235 45 restored restore VBN cord-269150-d1sgnxc0 235 46 after after IN cord-269150-d1sgnxc0 235 47 combining combine VBG cord-269150-d1sgnxc0 235 48 both both CC cord-269150-d1sgnxc0 235 49 transfected transfecte VBN cord-269150-d1sgnxc0 235 50 and and CC cord-269150-d1sgnxc0 235 51 untransfected untransfected JJ cord-269150-d1sgnxc0 235 52 cells cell NNS cord-269150-d1sgnxc0 235 53 . . . cord-269150-d1sgnxc0 236 1 Interestingly interestingly RB cord-269150-d1sgnxc0 236 2 , , , cord-269150-d1sgnxc0 236 3 over over IN cord-269150-d1sgnxc0 236 4 - - HYPH cord-269150-d1sgnxc0 236 5 expression expression NN cord-269150-d1sgnxc0 236 6 of of IN cord-269150-d1sgnxc0 236 7 silencing silencing NN cord-269150-d1sgnxc0 236 8 - - HYPH cord-269150-d1sgnxc0 236 9 sensitive sensitive JJ cord-269150-d1sgnxc0 236 10 MADP1 MADP1 NNP cord-269150-d1sgnxc0 236 11 was be VBD cord-269150-d1sgnxc0 236 12 unable unable JJ cord-269150-d1sgnxc0 236 13 to to TO cord-269150-d1sgnxc0 236 14 cause cause VB cord-269150-d1sgnxc0 236 15 an an DT cord-269150-d1sgnxc0 236 16 increase increase NN cord-269150-d1sgnxc0 236 17 in in IN cord-269150-d1sgnxc0 236 18 virus virus NN cord-269150-d1sgnxc0 236 19 infection infection NN cord-269150-d1sgnxc0 236 20 , , , cord-269150-d1sgnxc0 236 21 comparing compare VBG cord-269150-d1sgnxc0 236 22 to to IN cord-269150-d1sgnxc0 236 23 that that DT cord-269150-d1sgnxc0 236 24 was be VBD cord-269150-d1sgnxc0 236 25 observed observe VBN cord-269150-d1sgnxc0 236 26 for for IN cord-269150-d1sgnxc0 236 27 silencingresistant silencingresistant NNP cord-269150-d1sgnxc0 237 1 MADP1 MADP1 NNP cord-269150-d1sgnxc0 238 1 ( ( -LRB- cord-269150-d1sgnxc0 238 2 FMmut FMmut NNP cord-269150-d1sgnxc0 238 3 ) ) -RRB- cord-269150-d1sgnxc0 238 4 in in IN cord-269150-d1sgnxc0 238 5 shMadp1 shMadp1 NNP cord-269150-d1sgnxc0 238 6 cells cell NNS cord-269150-d1sgnxc0 238 7 , , , cord-269150-d1sgnxc0 238 8 even even RB cord-269150-d1sgnxc0 238 9 though though IN cord-269150-d1sgnxc0 238 10 their -PRON- PRP$ cord-269150-d1sgnxc0 238 11 expression expression NN cord-269150-d1sgnxc0 238 12 levels level NNS cord-269150-d1sgnxc0 238 13 were be VBD cord-269150-d1sgnxc0 238 14 comparable comparable JJ cord-269150-d1sgnxc0 238 15 . . . cord-269150-d1sgnxc0 239 1 This this DT cord-269150-d1sgnxc0 239 2 lends lend VBZ cord-269150-d1sgnxc0 239 3 further further JJ cord-269150-d1sgnxc0 239 4 support support NN cord-269150-d1sgnxc0 239 5 to to IN cord-269150-d1sgnxc0 239 6 the the DT cord-269150-d1sgnxc0 239 7 conclusion conclusion NN cord-269150-d1sgnxc0 239 8 that that IN cord-269150-d1sgnxc0 239 9 MADP1 MADP1 NNP cord-269150-d1sgnxc0 239 10 is be VBZ cord-269150-d1sgnxc0 239 11 actively actively RB cord-269150-d1sgnxc0 239 12 involved involve VBN cord-269150-d1sgnxc0 239 13 in in IN cord-269150-d1sgnxc0 239 14 the the DT cord-269150-d1sgnxc0 239 15 replication replication NN cord-269150-d1sgnxc0 239 16 and and CC cord-269150-d1sgnxc0 239 17 infectivity infectivity NN cord-269150-d1sgnxc0 239 18 of of IN cord-269150-d1sgnxc0 239 19 IBV IBV NNP cord-269150-d1sgnxc0 239 20 . . . cord-269150-d1sgnxc0 240 1 Although although IN cord-269150-d1sgnxc0 240 2 the the DT cord-269150-d1sgnxc0 240 3 functional functional JJ cord-269150-d1sgnxc0 240 4 studies study NNS cord-269150-d1sgnxc0 240 5 involving involve VBG cord-269150-d1sgnxc0 240 6 IBV IBV NNP cord-269150-d1sgnxc0 240 7 , , , cord-269150-d1sgnxc0 240 8 a a DT cord-269150-d1sgnxc0 240 9 chicken chicken NN cord-269150-d1sgnxc0 240 10 coronavirus coronavirus NN cord-269150-d1sgnxc0 240 11 , , , cord-269150-d1sgnxc0 240 12 and and CC cord-269150-d1sgnxc0 240 13 a a DT cord-269150-d1sgnxc0 240 14 human human JJ cord-269150-d1sgnxc0 240 15 protein protein NN cord-269150-d1sgnxc0 240 16 , , , cord-269150-d1sgnxc0 240 17 MADP1 MADP1 NNP cord-269150-d1sgnxc0 240 18 , , , cord-269150-d1sgnxc0 240 19 were be VBD cord-269150-d1sgnxc0 240 20 conducted conduct VBN cord-269150-d1sgnxc0 240 21 using use VBG cord-269150-d1sgnxc0 240 22 human human JJ cord-269150-d1sgnxc0 240 23 and and CC cord-269150-d1sgnxc0 240 24 African african JJ cord-269150-d1sgnxc0 240 25 green green JJ cord-269150-d1sgnxc0 240 26 monkey monkey NN cord-269150-d1sgnxc0 240 27 cells cell NNS cord-269150-d1sgnxc0 240 28 , , , cord-269150-d1sgnxc0 240 29 which which WDT cord-269150-d1sgnxc0 240 30 were be VBD cord-269150-d1sgnxc0 240 31 non non JJ cord-269150-d1sgnxc0 240 32 - - JJ cord-269150-d1sgnxc0 240 33 native native JJ cord-269150-d1sgnxc0 240 34 . . . cord-269150-d1sgnxc0 241 1 It -PRON- PRP cord-269150-d1sgnxc0 241 2 is be VBZ cord-269150-d1sgnxc0 241 3 noteworthy noteworthy JJ cord-269150-d1sgnxc0 241 4 that that IN cord-269150-d1sgnxc0 241 5 MADP1 MADP1 NNP cord-269150-d1sgnxc0 242 1 ( ( -LRB- cord-269150-d1sgnxc0 242 2 HomoloGene HomoloGene NNP cord-269150-d1sgnxc0 242 3 12095 12095 CD cord-269150-d1sgnxc0 242 4 ) ) -RRB- cord-269150-d1sgnxc0 242 5 is be VBZ cord-269150-d1sgnxc0 242 6 conserved conserve VBN cord-269150-d1sgnxc0 242 7 in in IN cord-269150-d1sgnxc0 242 8 humans human NNS cord-269150-d1sgnxc0 242 9 ( ( -LRB- cord-269150-d1sgnxc0 242 10 Homo Homo NNP cord-269150-d1sgnxc0 242 11 sapiens sapiens JJ cord-269150-d1sgnxc0 242 12 ) ) -RRB- cord-269150-d1sgnxc0 242 13 , , , cord-269150-d1sgnxc0 242 14 chimpanzees chimpanzee NNS cord-269150-d1sgnxc0 242 15 ( ( -LRB- cord-269150-d1sgnxc0 242 16 Pan Pan NNP cord-269150-d1sgnxc0 242 17 troglodytes troglodyte NNS cord-269150-d1sgnxc0 242 18 ) ) -RRB- cord-269150-d1sgnxc0 242 19 , , , cord-269150-d1sgnxc0 242 20 wolves wolf NNS cord-269150-d1sgnxc0 242 21 ( ( -LRB- cord-269150-d1sgnxc0 242 22 Canis Canis NNP cord-269150-d1sgnxc0 242 23 lupus lupus NN cord-269150-d1sgnxc0 242 24 ) ) -RRB- cord-269150-d1sgnxc0 242 25 , , , cord-269150-d1sgnxc0 242 26 cattle cattle NNS cord-269150-d1sgnxc0 242 27 ( ( -LRB- cord-269150-d1sgnxc0 242 28 Bos Bos NNP cord-269150-d1sgnxc0 242 29 Taurus Taurus NNP cord-269150-d1sgnxc0 242 30 ) ) -RRB- cord-269150-d1sgnxc0 242 31 , , , cord-269150-d1sgnxc0 242 32 mice mouse NNS cord-269150-d1sgnxc0 242 33 ( ( -LRB- cord-269150-d1sgnxc0 242 34 Mus Mus NNP cord-269150-d1sgnxc0 242 35 musculus musculus NN cord-269150-d1sgnxc0 242 36 ) ) -RRB- cord-269150-d1sgnxc0 242 37 , , , cord-269150-d1sgnxc0 242 38 rats rat NNS cord-269150-d1sgnxc0 242 39 ( ( -LRB- cord-269150-d1sgnxc0 242 40 Rattus Rattus NNP cord-269150-d1sgnxc0 242 41 norvegicus norvegicus NN cord-269150-d1sgnxc0 242 42 ) ) -RRB- cord-269150-d1sgnxc0 242 43 and and CC cord-269150-d1sgnxc0 242 44 chickens chicken NNS cord-269150-d1sgnxc0 242 45 ( ( -LRB- cord-269150-d1sgnxc0 242 46 Gallus Gallus NNP cord-269150-d1sgnxc0 242 47 gallus gallus NN cord-269150-d1sgnxc0 242 48 ) ) -RRB- cord-269150-d1sgnxc0 242 49 . . . cord-269150-d1sgnxc0 243 1 The the DT cord-269150-d1sgnxc0 243 2 African african JJ cord-269150-d1sgnxc0 243 3 green green JJ cord-269150-d1sgnxc0 243 4 monkey monkey NN cord-269150-d1sgnxc0 243 5 genome genome NN cord-269150-d1sgnxc0 243 6 is be VBZ cord-269150-d1sgnxc0 243 7 not not RB cord-269150-d1sgnxc0 243 8 available available JJ cord-269150-d1sgnxc0 243 9 at at IN cord-269150-d1sgnxc0 243 10 NCBI NCBI NNP cord-269150-d1sgnxc0 243 11 , , , cord-269150-d1sgnxc0 243 12 but but CC cord-269150-d1sgnxc0 243 13 an an DT cord-269150-d1sgnxc0 243 14 alignment alignment NN cord-269150-d1sgnxc0 243 15 search search NN cord-269150-d1sgnxc0 243 16 using use VBG cord-269150-d1sgnxc0 243 17 basic basic JJ cord-269150-d1sgnxc0 243 18 local local JJ cord-269150-d1sgnxc0 243 19 alignment alignment NN cord-269150-d1sgnxc0 243 20 search search NN cord-269150-d1sgnxc0 243 21 tool tool NN cord-269150-d1sgnxc0 243 22 ( ( -LRB- cord-269150-d1sgnxc0 243 23 BLAST blast NN cord-269150-d1sgnxc0 243 24 ) ) -RRB- cord-269150-d1sgnxc0 243 25 of of IN cord-269150-d1sgnxc0 243 26 the the DT cord-269150-d1sgnxc0 243 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 243 28 amino amino NN cord-269150-d1sgnxc0 243 29 acid acid NN cord-269150-d1sgnxc0 243 30 sequence sequence NN cord-269150-d1sgnxc0 243 31 against against IN cord-269150-d1sgnxc0 243 32 the the DT cord-269150-d1sgnxc0 243 33 rhesus rhesus NN cord-269150-d1sgnxc0 243 34 macaque macaque NN cord-269150-d1sgnxc0 243 35 ( ( -LRB- cord-269150-d1sgnxc0 243 36 Macaca Macaca NNP cord-269150-d1sgnxc0 243 37 mulatta mulatta NN cord-269150-d1sgnxc0 243 38 ) ) -RRB- cord-269150-d1sgnxc0 244 1 RefSeq RefSeq NNP cord-269150-d1sgnxc0 244 2 Protein Protein NNP cord-269150-d1sgnxc0 244 3 library library NN cord-269150-d1sgnxc0 244 4 yields yield VBZ cord-269150-d1sgnxc0 244 5 a a DT cord-269150-d1sgnxc0 244 6 99 99 CD cord-269150-d1sgnxc0 244 7 % % NN cord-269150-d1sgnxc0 244 8 sequence sequence NN cord-269150-d1sgnxc0 244 9 similarity similarity NN cord-269150-d1sgnxc0 244 10 between between IN cord-269150-d1sgnxc0 244 11 the the DT cord-269150-d1sgnxc0 244 12 two two CD cord-269150-d1sgnxc0 244 13 species specie NNS cord-269150-d1sgnxc0 244 14 . . . cord-269150-d1sgnxc0 245 1 The the DT cord-269150-d1sgnxc0 245 2 chicken chicken NN cord-269150-d1sgnxc0 245 3 homolog homolog NN cord-269150-d1sgnxc0 245 4 , , , cord-269150-d1sgnxc0 245 5 on on IN cord-269150-d1sgnxc0 245 6 the the DT cord-269150-d1sgnxc0 245 7 other other JJ cord-269150-d1sgnxc0 245 8 hand hand NN cord-269150-d1sgnxc0 245 9 , , , cord-269150-d1sgnxc0 245 10 bears bear VBZ cord-269150-d1sgnxc0 245 11 85 85 CD cord-269150-d1sgnxc0 245 12 % % NN cord-269150-d1sgnxc0 245 13 amino amino NN cord-269150-d1sgnxc0 245 14 acid acid NN cord-269150-d1sgnxc0 245 15 sequence sequence NN cord-269150-d1sgnxc0 245 16 similarity similarity NN cord-269150-d1sgnxc0 245 17 , , , cord-269150-d1sgnxc0 245 18 but but CC cord-269150-d1sgnxc0 245 19 with with IN cord-269150-d1sgnxc0 245 20 an an DT cord-269150-d1sgnxc0 245 21 almost almost RB cord-269150-d1sgnxc0 245 22 identical identical JJ cord-269150-d1sgnxc0 245 23 match match NN cord-269150-d1sgnxc0 245 24 in in IN cord-269150-d1sgnxc0 245 25 the the DT cord-269150-d1sgnxc0 245 26 N n CD cord-269150-d1sgnxc0 245 27 - - HYPH cord-269150-d1sgnxc0 245 28 terminal terminal NN cord-269150-d1sgnxc0 245 29 120 120 CD cord-269150-d1sgnxc0 245 30 amino amino NN cord-269150-d1sgnxc0 245 31 acids acid NNS cord-269150-d1sgnxc0 245 32 , , , cord-269150-d1sgnxc0 245 33 to to IN cord-269150-d1sgnxc0 245 34 the the DT cord-269150-d1sgnxc0 245 35 human human JJ cord-269150-d1sgnxc0 245 36 MADP1 MADP1 NNP cord-269150-d1sgnxc0 245 37 protein protein NN cord-269150-d1sgnxc0 245 38 . . . cord-269150-d1sgnxc0 246 1 As as IN cord-269150-d1sgnxc0 246 2 the the DT cord-269150-d1sgnxc0 246 3 predicted predict VBN cord-269150-d1sgnxc0 246 4 interaction interaction NN cord-269150-d1sgnxc0 246 5 domain domain NN cord-269150-d1sgnxc0 246 6 lies lie VBZ cord-269150-d1sgnxc0 246 7 in in IN cord-269150-d1sgnxc0 246 8 the the DT cord-269150-d1sgnxc0 246 9 N N NNP cord-269150-d1sgnxc0 246 10 - - HYPH cord-269150-d1sgnxc0 246 11 terminus terminus NN cord-269150-d1sgnxc0 246 12 , , , cord-269150-d1sgnxc0 246 13 it -PRON- PRP cord-269150-d1sgnxc0 246 14 is be VBZ cord-269150-d1sgnxc0 246 15 highly highly RB cord-269150-d1sgnxc0 246 16 likely likely JJ cord-269150-d1sgnxc0 246 17 that that IN cord-269150-d1sgnxc0 246 18 the the DT cord-269150-d1sgnxc0 246 19 homologs homolog NNS cord-269150-d1sgnxc0 246 20 from from IN cord-269150-d1sgnxc0 246 21 other other JJ cord-269150-d1sgnxc0 246 22 species specie NNS cord-269150-d1sgnxc0 246 23 could could MD cord-269150-d1sgnxc0 246 24 replace replace VB cord-269150-d1sgnxc0 246 25 human human JJ cord-269150-d1sgnxc0 246 26 MADP1 MADP1 NNP cord-269150-d1sgnxc0 246 27 in in IN cord-269150-d1sgnxc0 246 28 the the DT cord-269150-d1sgnxc0 246 29 interaction interaction NN cord-269150-d1sgnxc0 246 30 studies study NNS cord-269150-d1sgnxc0 246 31 . . . cord-269150-d1sgnxc0 247 1 In in IN cord-269150-d1sgnxc0 247 2 conclusion conclusion NN cord-269150-d1sgnxc0 247 3 , , , cord-269150-d1sgnxc0 247 4 the the DT cord-269150-d1sgnxc0 247 5 involvement involvement NN cord-269150-d1sgnxc0 247 6 of of IN cord-269150-d1sgnxc0 247 7 MADP1 MADP1 NNP cord-269150-d1sgnxc0 247 8 in in IN cord-269150-d1sgnxc0 247 9 coronavirus coronavirus NN cord-269150-d1sgnxc0 247 10 RNA RNA NNP cord-269150-d1sgnxc0 247 11 synthesis synthesis NN cord-269150-d1sgnxc0 247 12 and and CC cord-269150-d1sgnxc0 247 13 its -PRON- PRP$ cord-269150-d1sgnxc0 247 14 significance significance NN cord-269150-d1sgnxc0 247 15 are be VBP cord-269150-d1sgnxc0 247 16 demonstrated demonstrate VBN cord-269150-d1sgnxc0 247 17 in in IN cord-269150-d1sgnxc0 247 18 this this DT cord-269150-d1sgnxc0 247 19 study study NN cord-269150-d1sgnxc0 247 20 in in IN cord-269150-d1sgnxc0 247 21 the the DT cord-269150-d1sgnxc0 247 22 tissue tissue NN cord-269150-d1sgnxc0 247 23 culture culture NN cord-269150-d1sgnxc0 247 24 system system NN cord-269150-d1sgnxc0 247 25 . . . cord-269150-d1sgnxc0 248 1 Further further JJ cord-269150-d1sgnxc0 248 2 studies study NNS cord-269150-d1sgnxc0 248 3 with with IN cord-269150-d1sgnxc0 248 4 an an DT cord-269150-d1sgnxc0 248 5 MADP1 MADP1 NNP cord-269150-d1sgnxc0 248 6 knock knock VB cord-269150-d1sgnxc0 248 7 - - HYPH cord-269150-d1sgnxc0 248 8 out out RP cord-269150-d1sgnxc0 248 9 animal animal NN cord-269150-d1sgnxc0 248 10 system system NN cord-269150-d1sgnxc0 248 11 , , , cord-269150-d1sgnxc0 248 12 which which WDT cord-269150-d1sgnxc0 248 13 is be VBZ cord-269150-d1sgnxc0 248 14 currently currently RB cord-269150-d1sgnxc0 248 15 not not RB cord-269150-d1sgnxc0 248 16 available available JJ cord-269150-d1sgnxc0 248 17 , , , cord-269150-d1sgnxc0 248 18 would would MD cord-269150-d1sgnxc0 248 19 be be VB cord-269150-d1sgnxc0 248 20 required require VBN cord-269150-d1sgnxc0 248 21 to to TO cord-269150-d1sgnxc0 248 22 confirm confirm VB cord-269150-d1sgnxc0 248 23 further further RB cord-269150-d1sgnxc0 248 24 the the DT cord-269150-d1sgnxc0 248 25 involvement involvement NN cord-269150-d1sgnxc0 248 26 of of IN cord-269150-d1sgnxc0 248 27 MADP1 MADP1 NNP cord-269150-d1sgnxc0 248 28 in in IN cord-269150-d1sgnxc0 248 29 coronavirus coronavirus NN cord-269150-d1sgnxc0 248 30 RNA RNA NNP cord-269150-d1sgnxc0 248 31 synthesis synthesis NN cord-269150-d1sgnxc0 248 32 . . . cord-269150-d1sgnxc0 248 33 _SP cord-269150-d1sgnxc0 249 1 Human human JJ cord-269150-d1sgnxc0 249 2 coronavirus coronavirus NN cord-269150-d1sgnxc0 250 1 NL63 NL63 NNP cord-269150-d1sgnxc0 250 2 employs employ VBZ cord-269150-d1sgnxc0 250 3 the the DT cord-269150-d1sgnxc0 250 4 severe severe JJ cord-269150-d1sgnxc0 250 5 acute acute JJ cord-269150-d1sgnxc0 250 6 respiratory respiratory JJ cord-269150-d1sgnxc0 250 7 syndrome syndrome NN cord-269150-d1sgnxc0 250 8 coronavirus coronavirus NN cord-269150-d1sgnxc0 250 9 receptor receptor NN cord-269150-d1sgnxc0 250 10 for for IN cord-269150-d1sgnxc0 250 11 cellular cellular JJ cord-269150-d1sgnxc0 250 12 entry entry NN cord-269150-d1sgnxc0 251 1 Angiotensin angiotensin NN cord-269150-d1sgnxc0 251 2 - - HYPH cord-269150-d1sgnxc0 251 3 converting convert VBG cord-269150-d1sgnxc0 251 4 enzyme enzyme NN cord-269150-d1sgnxc0 251 5 2 2 CD cord-269150-d1sgnxc0 251 6 is be VBZ cord-269150-d1sgnxc0 251 7 a a DT cord-269150-d1sgnxc0 251 8 functional functional JJ cord-269150-d1sgnxc0 251 9 receptor receptor NN cord-269150-d1sgnxc0 251 10 for for IN cord-269150-d1sgnxc0 251 11 the the DT cord-269150-d1sgnxc0 251 12 SARS SARS NNP cord-269150-d1sgnxc0 251 13 coronavirus coronavirus NN cord-269150-d1sgnxc0 252 1 A a DT cord-269150-d1sgnxc0 252 2 transmembrane transmembrane NN cord-269150-d1sgnxc0 252 3 serine serine NN cord-269150-d1sgnxc0 252 4 protease protease NN cord-269150-d1sgnxc0 252 5 is be VBZ cord-269150-d1sgnxc0 252 6 linked link VBN cord-269150-d1sgnxc0 252 7 to to IN cord-269150-d1sgnxc0 252 8 the the DT cord-269150-d1sgnxc0 252 9 severe severe JJ cord-269150-d1sgnxc0 252 10 acute acute JJ cord-269150-d1sgnxc0 252 11 respiratory respiratory JJ cord-269150-d1sgnxc0 252 12 syndrome syndrome NN cord-269150-d1sgnxc0 252 13 coronavirus coronavirus NN cord-269150-d1sgnxc0 252 14 receptor receptor NN cord-269150-d1sgnxc0 252 15 and and CC cord-269150-d1sgnxc0 252 16 activates activate VBZ cord-269150-d1sgnxc0 252 17 virus virus NN cord-269150-d1sgnxc0 252 18 entry entry NN cord-269150-d1sgnxc0 252 19 Crystal Crystal NNP cord-269150-d1sgnxc0 252 20 structure structure NN cord-269150-d1sgnxc0 252 21 of of IN cord-269150-d1sgnxc0 252 22 NL63 NL63 NNP cord-269150-d1sgnxc0 252 23 respiratory respiratory JJ cord-269150-d1sgnxc0 252 24 coronavirus coronavirus NN cord-269150-d1sgnxc0 252 25 receptor receptor NN cord-269150-d1sgnxc0 252 26 - - HYPH cord-269150-d1sgnxc0 252 27 binding bind VBG cord-269150-d1sgnxc0 252 28 domain domain NN cord-269150-d1sgnxc0 252 29 complexed complexe VBN cord-269150-d1sgnxc0 252 30 with with IN cord-269150-d1sgnxc0 252 31 its -PRON- PRP$ cord-269150-d1sgnxc0 252 32 human human JJ cord-269150-d1sgnxc0 252 33 receptor receptor NN cord-269150-d1sgnxc0 252 34 Proteolytic Proteolytic NNP cord-269150-d1sgnxc0 252 35 activation activation NN cord-269150-d1sgnxc0 252 36 of of IN cord-269150-d1sgnxc0 252 37 the the DT cord-269150-d1sgnxc0 252 38 spike spike NN cord-269150-d1sgnxc0 252 39 protein protein NN cord-269150-d1sgnxc0 252 40 at at IN cord-269150-d1sgnxc0 252 41 a a DT cord-269150-d1sgnxc0 252 42 novel novel NN cord-269150-d1sgnxc0 252 43 RRRR RRRR NNP cord-269150-d1sgnxc0 252 44 / / SYM cord-269150-d1sgnxc0 252 45 S s NN cord-269150-d1sgnxc0 252 46 motif motif NN cord-269150-d1sgnxc0 252 47 is be VBZ cord-269150-d1sgnxc0 252 48 implicated implicate VBN cord-269150-d1sgnxc0 252 49 in in IN cord-269150-d1sgnxc0 252 50 furin furin NN cord-269150-d1sgnxc0 252 51 - - HYPH cord-269150-d1sgnxc0 252 52 dependent dependent JJ cord-269150-d1sgnxc0 252 53 entry entry NN cord-269150-d1sgnxc0 252 54 , , , cord-269150-d1sgnxc0 252 55 syncytium syncytium NN cord-269150-d1sgnxc0 252 56 formation formation NN cord-269150-d1sgnxc0 252 57 , , , cord-269150-d1sgnxc0 252 58 and and CC cord-269150-d1sgnxc0 252 59 infectivity infectivity NN cord-269150-d1sgnxc0 252 60 of of IN cord-269150-d1sgnxc0 252 61 coronavirus coronavirus NN cord-269150-d1sgnxc0 252 62 infectious infectious JJ cord-269150-d1sgnxc0 252 63 bronchitis bronchitis NN cord-269150-d1sgnxc0 252 64 virus virus NN cord-269150-d1sgnxc0 252 65 in in IN cord-269150-d1sgnxc0 252 66 cultured cultured JJ cord-269150-d1sgnxc0 252 67 cells cell NNS cord-269150-d1sgnxc0 252 68 Acquisition Acquisition NNP cord-269150-d1sgnxc0 252 69 of of IN cord-269150-d1sgnxc0 252 70 cell cell NN cord-269150-d1sgnxc0 252 71 - - HYPH cord-269150-d1sgnxc0 252 72 cell cell NN cord-269150-d1sgnxc0 252 73 fusion fusion NN cord-269150-d1sgnxc0 252 74 activity activity NN cord-269150-d1sgnxc0 252 75 by by IN cord-269150-d1sgnxc0 252 76 amino amino NN cord-269150-d1sgnxc0 252 77 acid acid NN cord-269150-d1sgnxc0 252 78 substitutions substitution NNS cord-269150-d1sgnxc0 252 79 in in IN cord-269150-d1sgnxc0 252 80 spike spike NN cord-269150-d1sgnxc0 252 81 protein protein NN cord-269150-d1sgnxc0 252 82 determines determine VBZ cord-269150-d1sgnxc0 252 83 the the DT cord-269150-d1sgnxc0 252 84 infectivity infectivity NN cord-269150-d1sgnxc0 252 85 of of IN cord-269150-d1sgnxc0 252 86 a a DT cord-269150-d1sgnxc0 252 87 coronavirus coronavirus NN cord-269150-d1sgnxc0 252 88 in in IN cord-269150-d1sgnxc0 252 89 cultured cultured JJ cord-269150-d1sgnxc0 252 90 cells cell NNS cord-269150-d1sgnxc0 252 91 Coronavirus Coronavirus NNP cord-269150-d1sgnxc0 252 92 genome genome NN cord-269150-d1sgnxc0 252 93 structure structure NN cord-269150-d1sgnxc0 252 94 and and CC cord-269150-d1sgnxc0 252 95 replication replication NN cord-269150-d1sgnxc0 253 1 The the DT cord-269150-d1sgnxc0 253 2 role role NN cord-269150-d1sgnxc0 253 3 of of IN cord-269150-d1sgnxc0 253 4 programmed-1 programmed-1 NNP cord-269150-d1sgnxc0 253 5 ribosomal ribosomal JJ cord-269150-d1sgnxc0 253 6 frameshifting frameshifte VBG cord-269150-d1sgnxc0 253 7 in in IN cord-269150-d1sgnxc0 253 8 coronavirus coronavirus NN cord-269150-d1sgnxc0 253 9 propagation propagation NN cord-269150-d1sgnxc0 253 10 Identification Identification NNP cord-269150-d1sgnxc0 253 11 of of IN cord-269150-d1sgnxc0 253 12 heptaand heptaand NN cord-269150-d1sgnxc0 253 13 octo octo NN cord-269150-d1sgnxc0 253 14 - - HYPH cord-269150-d1sgnxc0 253 15 uridine uridine NNP cord-269150-d1sgnxc0 253 16 stretches stretch VBZ cord-269150-d1sgnxc0 253 17 as as IN cord-269150-d1sgnxc0 253 18 sole sole JJ cord-269150-d1sgnxc0 253 19 signals signal NNS cord-269150-d1sgnxc0 253 20 for for IN cord-269150-d1sgnxc0 253 21 programmed program VBN cord-269150-d1sgnxc0 253 22 +1 +1 NNS cord-269150-d1sgnxc0 253 23 and and CC cord-269150-d1sgnxc0 253 24 -1 -1 NN cord-269150-d1sgnxc0 253 25 ribosomal ribosomal JJ cord-269150-d1sgnxc0 253 26 frameshifting frameshifte VBG cord-269150-d1sgnxc0 253 27 during during IN cord-269150-d1sgnxc0 253 28 translation translation NN cord-269150-d1sgnxc0 253 29 of of IN cord-269150-d1sgnxc0 253 30 SARS SARS NNP cord-269150-d1sgnxc0 253 31 - - HYPH cord-269150-d1sgnxc0 253 32 CoV CoV NNP cord-269150-d1sgnxc0 253 33 ORF ORF NNP cord-269150-d1sgnxc0 253 34 3a 3a CD cord-269150-d1sgnxc0 253 35 variants variant NNS cord-269150-d1sgnxc0 254 1 A a DT cord-269150-d1sgnxc0 254 2 mechanical mechanical JJ cord-269150-d1sgnxc0 254 3 explanation explanation NN cord-269150-d1sgnxc0 254 4 of of IN cord-269150-d1sgnxc0 254 5 RNA RNA NNP cord-269150-d1sgnxc0 254 6 pseudoknot pseudoknot NNP cord-269150-d1sgnxc0 254 7 function function VB cord-269150-d1sgnxc0 254 8 in in IN cord-269150-d1sgnxc0 254 9 programmed program VBN cord-269150-d1sgnxc0 254 10 ribosomal ribosomal JJ cord-269150-d1sgnxc0 254 11 frameshifting frameshifte VBG cord-269150-d1sgnxc0 254 12 Virus virus NN cord-269150-d1sgnxc0 254 13 - - HYPH cord-269150-d1sgnxc0 254 14 encoded encode VBN cord-269150-d1sgnxc0 254 15 proteinases proteinase NNS cord-269150-d1sgnxc0 254 16 and and CC cord-269150-d1sgnxc0 254 17 proteolytic proteolytic JJ cord-269150-d1sgnxc0 254 18 processing processing NN cord-269150-d1sgnxc0 254 19 in in IN cord-269150-d1sgnxc0 254 20 the the DT cord-269150-d1sgnxc0 254 21 Nidovirales Nidovirales NNP cord-269150-d1sgnxc0 255 1 An an DT cord-269150-d1sgnxc0 255 2 arginine arginine NN cord-269150-d1sgnxc0 255 3 - - HYPH cord-269150-d1sgnxc0 255 4 to to IN cord-269150-d1sgnxc0 255 5 - - HYPH cord-269150-d1sgnxc0 255 6 proline proline NN cord-269150-d1sgnxc0 255 7 mutation mutation NN cord-269150-d1sgnxc0 255 8 in in IN cord-269150-d1sgnxc0 255 9 a a DT cord-269150-d1sgnxc0 255 10 domain domain NN cord-269150-d1sgnxc0 255 11 with with IN cord-269150-d1sgnxc0 255 12 undefined undefined JJ cord-269150-d1sgnxc0 255 13 functions function NNS cord-269150-d1sgnxc0 255 14 within within IN cord-269150-d1sgnxc0 255 15 the the DT cord-269150-d1sgnxc0 255 16 helicase helicase NN cord-269150-d1sgnxc0 255 17 protein protein NN cord-269150-d1sgnxc0 255 18 ( ( -LRB- cord-269150-d1sgnxc0 255 19 Nsp13 Nsp13 NNP cord-269150-d1sgnxc0 255 20 ) ) -RRB- cord-269150-d1sgnxc0 255 21 is be VBZ cord-269150-d1sgnxc0 255 22 lethal lethal JJ cord-269150-d1sgnxc0 255 23 to to IN cord-269150-d1sgnxc0 255 24 the the DT cord-269150-d1sgnxc0 255 25 coronavirus coronavirus NN cord-269150-d1sgnxc0 255 26 infectious infectious JJ cord-269150-d1sgnxc0 255 27 bronchitis bronchitis NN cord-269150-d1sgnxc0 255 28 virus virus NN cord-269150-d1sgnxc0 255 29 in in IN cord-269150-d1sgnxc0 255 30 cultured cultured JJ cord-269150-d1sgnxc0 255 31 cells cell NNS cord-269150-d1sgnxc0 255 32 Proteolytic proteolytic JJ cord-269150-d1sgnxc0 255 33 processing processing NN cord-269150-d1sgnxc0 255 34 of of IN cord-269150-d1sgnxc0 255 35 polyproteins polyproteins NNP cord-269150-d1sgnxc0 255 36 1a 1a NNP cord-269150-d1sgnxc0 255 37 and and CC cord-269150-d1sgnxc0 255 38 1ab 1ab CD cord-269150-d1sgnxc0 255 39 between between IN cord-269150-d1sgnxc0 255 40 non non JJ cord-269150-d1sgnxc0 255 41 - - JJ cord-269150-d1sgnxc0 255 42 structural structural JJ cord-269150-d1sgnxc0 255 43 proteins protein NNS cord-269150-d1sgnxc0 255 44 10 10 CD cord-269150-d1sgnxc0 255 45 and and CC cord-269150-d1sgnxc0 255 46 11/12 11/12 CD cord-269150-d1sgnxc0 255 47 of of IN cord-269150-d1sgnxc0 255 48 Coronavirus Coronavirus NNP cord-269150-d1sgnxc0 255 49 infectious infectious JJ cord-269150-d1sgnxc0 255 50 bronchitis bronchitis NN cord-269150-d1sgnxc0 255 51 virus virus NN cord-269150-d1sgnxc0 255 52 is be VBZ cord-269150-d1sgnxc0 255 53 dispensable dispensable JJ cord-269150-d1sgnxc0 255 54 for for IN cord-269150-d1sgnxc0 255 55 viral viral JJ cord-269150-d1sgnxc0 255 56 replication replication NN cord-269150-d1sgnxc0 255 57 in in IN cord-269150-d1sgnxc0 255 58 cultured cultured JJ cord-269150-d1sgnxc0 255 59 cells cell NNS cord-269150-d1sgnxc0 255 60 Functional functional JJ cord-269150-d1sgnxc0 255 61 and and CC cord-269150-d1sgnxc0 255 62 genetic genetic JJ cord-269150-d1sgnxc0 255 63 studies study NNS cord-269150-d1sgnxc0 255 64 of of IN cord-269150-d1sgnxc0 255 65 the the DT cord-269150-d1sgnxc0 255 66 substrate substrate JJ cord-269150-d1sgnxc0 255 67 specificity specificity NN cord-269150-d1sgnxc0 255 68 of of IN cord-269150-d1sgnxc0 255 69 coronavirus coronavirus NN cord-269150-d1sgnxc0 255 70 infectious infectious JJ cord-269150-d1sgnxc0 255 71 bronchitis bronchitis NN cord-269150-d1sgnxc0 255 72 virus virus NN cord-269150-d1sgnxc0 255 73 3C 3c NN cord-269150-d1sgnxc0 255 74 - - HYPH cord-269150-d1sgnxc0 255 75 like like JJ cord-269150-d1sgnxc0 255 76 proteinase proteinase NN cord-269150-d1sgnxc0 255 77 Functional functional JJ cord-269150-d1sgnxc0 255 78 screen screen NN cord-269150-d1sgnxc0 255 79 reveals reveal VBZ cord-269150-d1sgnxc0 255 80 SARS SARS NNP cord-269150-d1sgnxc0 255 81 coronavirus coronavirus NN cord-269150-d1sgnxc0 255 82 nonstructural nonstructural JJ cord-269150-d1sgnxc0 255 83 protein protein NN cord-269150-d1sgnxc0 256 1 nsp14 nsp14 NFP cord-269150-d1sgnxc0 256 2 as as IN cord-269150-d1sgnxc0 256 3 a a DT cord-269150-d1sgnxc0 256 4 novel novel NN cord-269150-d1sgnxc0 256 5 cap cap NN cord-269150-d1sgnxc0 256 6 N7 N7 NNP cord-269150-d1sgnxc0 256 7 methyltransferase methyltransferase NN cord-269150-d1sgnxc0 256 8 Identification identification NN cord-269150-d1sgnxc0 256 9 of of IN cord-269150-d1sgnxc0 256 10 a a DT cord-269150-d1sgnxc0 256 11 novel novel JJ cord-269150-d1sgnxc0 256 12 cleavage cleavage NN cord-269150-d1sgnxc0 256 13 activity activity NN cord-269150-d1sgnxc0 256 14 of of IN cord-269150-d1sgnxc0 256 15 the the DT cord-269150-d1sgnxc0 256 16 first first JJ cord-269150-d1sgnxc0 256 17 papain papain NN cord-269150-d1sgnxc0 256 18 - - HYPH cord-269150-d1sgnxc0 256 19 like like JJ cord-269150-d1sgnxc0 256 20 proteinase proteinase NN cord-269150-d1sgnxc0 256 21 domain domain NN cord-269150-d1sgnxc0 256 22 encoded encode VBN cord-269150-d1sgnxc0 256 23 by by IN cord-269150-d1sgnxc0 256 24 open open JJ cord-269150-d1sgnxc0 256 25 reading reading NN cord-269150-d1sgnxc0 256 26 frame frame NN cord-269150-d1sgnxc0 256 27 1a 1a CD cord-269150-d1sgnxc0 256 28 of of IN cord-269150-d1sgnxc0 256 29 the the DT cord-269150-d1sgnxc0 256 30 coronavirus coronavirus NN cord-269150-d1sgnxc0 257 1 Avian avian JJ cord-269150-d1sgnxc0 257 2 infectious infectious JJ cord-269150-d1sgnxc0 257 3 bronchitis bronchitis NN cord-269150-d1sgnxc0 257 4 virus virus NN cord-269150-d1sgnxc0 257 5 and and CC cord-269150-d1sgnxc0 257 6 characterization characterization NN cord-269150-d1sgnxc0 257 7 of of IN cord-269150-d1sgnxc0 257 8 the the DT cord-269150-d1sgnxc0 257 9 cleavage cleavage NN cord-269150-d1sgnxc0 257 10 products product NNS cord-269150-d1sgnxc0 257 11 Characterization characterization NN cord-269150-d1sgnxc0 257 12 of of IN cord-269150-d1sgnxc0 257 13 viral viral JJ cord-269150-d1sgnxc0 257 14 proteins protein NNS cord-269150-d1sgnxc0 257 15 encoded encode VBN cord-269150-d1sgnxc0 257 16 by by IN cord-269150-d1sgnxc0 257 17 the the DT cord-269150-d1sgnxc0 257 18 SARS SARS NNP cord-269150-d1sgnxc0 257 19 - - HYPH cord-269150-d1sgnxc0 257 20 coronavirus coronavirus NN cord-269150-d1sgnxc0 257 21 genome genome NN cord-269150-d1sgnxc0 258 1 The the DT cord-269150-d1sgnxc0 258 2 molecular molecular JJ cord-269150-d1sgnxc0 258 3 biology biology NN cord-269150-d1sgnxc0 258 4 of of IN cord-269150-d1sgnxc0 258 5 coronaviruses coronaviruse NNS cord-269150-d1sgnxc0 259 1 A a DT cord-269150-d1sgnxc0 259 2 two two CD cord-269150-d1sgnxc0 259 3 - - HYPH cord-269150-d1sgnxc0 259 4 pronged pronged JJ cord-269150-d1sgnxc0 259 5 strategy strategy NN cord-269150-d1sgnxc0 259 6 to to TO cord-269150-d1sgnxc0 259 7 suppress suppress VB cord-269150-d1sgnxc0 259 8 host host NN cord-269150-d1sgnxc0 259 9 protein protein NN cord-269150-d1sgnxc0 259 10 synthesis synthesis NN cord-269150-d1sgnxc0 259 11 by by IN cord-269150-d1sgnxc0 259 12 SARS SARS NNP cord-269150-d1sgnxc0 259 13 coronavirus coronavirus NN cord-269150-d1sgnxc0 260 1 Nsp1 nsp1 NN cord-269150-d1sgnxc0 260 2 protein protein NN cord-269150-d1sgnxc0 260 3 Severe severe JJ cord-269150-d1sgnxc0 261 1 acute acute JJ cord-269150-d1sgnxc0 261 2 respiratory respiratory JJ cord-269150-d1sgnxc0 261 3 syndrome syndrome NN cord-269150-d1sgnxc0 261 4 coronavirus coronavirus NN cord-269150-d1sgnxc0 261 5 nsp1 nsp1 CD cord-269150-d1sgnxc0 261 6 suppresses suppress VBZ cord-269150-d1sgnxc0 261 7 host host NN cord-269150-d1sgnxc0 261 8 gene gene NN cord-269150-d1sgnxc0 261 9 expression expression NN cord-269150-d1sgnxc0 261 10 , , , cord-269150-d1sgnxc0 261 11 including include VBG cord-269150-d1sgnxc0 261 12 that that DT cord-269150-d1sgnxc0 261 13 of of IN cord-269150-d1sgnxc0 261 14 type type NN cord-269150-d1sgnxc0 262 1 I -PRON- PRP cord-269150-d1sgnxc0 262 2 interferon interferon RB cord-269150-d1sgnxc0 263 1 , , , cord-269150-d1sgnxc0 263 2 in in IN cord-269150-d1sgnxc0 263 3 infected infected JJ cord-269150-d1sgnxc0 263 4 cells cell NNS cord-269150-d1sgnxc0 263 5 Severe severe JJ cord-269150-d1sgnxc0 264 1 acute acute JJ cord-269150-d1sgnxc0 264 2 respiratory respiratory JJ cord-269150-d1sgnxc0 264 3 syndrome syndrome NN cord-269150-d1sgnxc0 264 4 coronavirus coronavirus NN cord-269150-d1sgnxc0 265 1 nsp1 nsp1 NNS cord-269150-d1sgnxc0 265 2 protein protein NN cord-269150-d1sgnxc0 265 3 suppresses suppress VBZ cord-269150-d1sgnxc0 265 4 host host NN cord-269150-d1sgnxc0 265 5 gene gene NN cord-269150-d1sgnxc0 265 6 expression expression NN cord-269150-d1sgnxc0 265 7 by by IN cord-269150-d1sgnxc0 265 8 promoting promote VBG cord-269150-d1sgnxc0 265 9 host host NN cord-269150-d1sgnxc0 265 10 mRNA mrna NN cord-269150-d1sgnxc0 265 11 degradation degradation NN cord-269150-d1sgnxc0 265 12 Characterization characterization NN cord-269150-d1sgnxc0 265 13 of of IN cord-269150-d1sgnxc0 265 14 the the DT cord-269150-d1sgnxc0 265 15 expression expression NN cord-269150-d1sgnxc0 265 16 , , , cord-269150-d1sgnxc0 265 17 intracellular intracellular JJ cord-269150-d1sgnxc0 265 18 localization localization NN cord-269150-d1sgnxc0 265 19 , , , cord-269150-d1sgnxc0 265 20 and and CC cord-269150-d1sgnxc0 265 21 replication replication NN cord-269150-d1sgnxc0 265 22 complex complex NNP cord-269150-d1sgnxc0 265 23 association association NNP cord-269150-d1sgnxc0 265 24 of of IN cord-269150-d1sgnxc0 265 25 the the DT cord-269150-d1sgnxc0 265 26 putative putative JJ cord-269150-d1sgnxc0 265 27 mouse mouse NN cord-269150-d1sgnxc0 265 28 hepatitis hepatitis NNP cord-269150-d1sgnxc0 265 29 virus virus NN cord-269150-d1sgnxc0 265 30 RNA RNA NNP cord-269150-d1sgnxc0 265 31 - - HYPH cord-269150-d1sgnxc0 265 32 dependent dependent JJ cord-269150-d1sgnxc0 265 33 RNA RNA NNP cord-269150-d1sgnxc0 265 34 polymerase polymerase NN cord-269150-d1sgnxc0 265 35 Nidovirus Nidovirus NNP cord-269150-d1sgnxc0 265 36 transcription transcription NN cord-269150-d1sgnxc0 265 37 : : : cord-269150-d1sgnxc0 265 38 how how WRB cord-269150-d1sgnxc0 265 39 to to TO cord-269150-d1sgnxc0 265 40 make make VB cord-269150-d1sgnxc0 265 41 sense sense NN cord-269150-d1sgnxc0 265 42 Coronavirus Coronavirus NNP cord-269150-d1sgnxc0 265 43 transcription transcription NN cord-269150-d1sgnxc0 265 44 : : : cord-269150-d1sgnxc0 265 45 a a DT cord-269150-d1sgnxc0 265 46 perspective perspective NN cord-269150-d1sgnxc0 265 47 The the DT cord-269150-d1sgnxc0 265 48 coronavirus coronavirus NN cord-269150-d1sgnxc0 265 49 nucleocapsid nucleocapsid NN cord-269150-d1sgnxc0 265 50 protein protein NN cord-269150-d1sgnxc0 265 51 is be VBZ cord-269150-d1sgnxc0 265 52 dynamically dynamically RB cord-269150-d1sgnxc0 265 53 associated associate VBN cord-269150-d1sgnxc0 265 54 with with IN cord-269150-d1sgnxc0 265 55 the the DT cord-269150-d1sgnxc0 265 56 replication replication NN cord-269150-d1sgnxc0 265 57 - - HYPH cord-269150-d1sgnxc0 265 58 transcription transcription NN cord-269150-d1sgnxc0 265 59 complexes complex NNS cord-269150-d1sgnxc0 266 1 Coronavirus Coronavirus NNP cord-269150-d1sgnxc0 266 2 nucleocapsid nucleocapsid NN cord-269150-d1sgnxc0 266 3 protein protein NN cord-269150-d1sgnxc0 266 4 facilitates facilitate VBZ cord-269150-d1sgnxc0 266 5 template template NN cord-269150-d1sgnxc0 266 6 switching switching NN cord-269150-d1sgnxc0 266 7 and and CC cord-269150-d1sgnxc0 266 8 is be VBZ cord-269150-d1sgnxc0 266 9 required require VBN cord-269150-d1sgnxc0 266 10 for for IN cord-269150-d1sgnxc0 266 11 efficient efficient JJ cord-269150-d1sgnxc0 266 12 transcription transcription NN cord-269150-d1sgnxc0 266 13 Viral viral JJ cord-269150-d1sgnxc0 266 14 and and CC cord-269150-d1sgnxc0 266 15 cellular cellular JJ cord-269150-d1sgnxc0 266 16 proteins protein NNS cord-269150-d1sgnxc0 266 17 involved involve VBN cord-269150-d1sgnxc0 266 18 in in IN cord-269150-d1sgnxc0 266 19 coronavirus coronavirus NN cord-269150-d1sgnxc0 266 20 replication replication NN cord-269150-d1sgnxc0 267 1 Polypyrimidine Polypyrimidine NNP cord-269150-d1sgnxc0 267 2 - - HYPH cord-269150-d1sgnxc0 267 3 tractbinding tractbinde VBG cord-269150-d1sgnxc0 267 4 protein protein NN cord-269150-d1sgnxc0 267 5 affects affect VBZ cord-269150-d1sgnxc0 267 6 transcription transcription NN cord-269150-d1sgnxc0 267 7 but but CC cord-269150-d1sgnxc0 267 8 not not RB cord-269150-d1sgnxc0 267 9 translation translation NN cord-269150-d1sgnxc0 267 10 of of IN cord-269150-d1sgnxc0 267 11 mouse mouse NNP cord-269150-d1sgnxc0 267 12 hepatitis hepatitis NNP cord-269150-d1sgnxc0 267 13 virus virus NN cord-269150-d1sgnxc0 267 14 RNA RNA NNP cord-269150-d1sgnxc0 267 15 Heterogeneous Heterogeneous NNP cord-269150-d1sgnxc0 267 16 nuclear nuclear JJ cord-269150-d1sgnxc0 267 17 ribonucleoprotein ribonucleoprotein NN cord-269150-d1sgnxc0 267 18 a1 a1 NNP cord-269150-d1sgnxc0 267 19 binds bind VBZ cord-269150-d1sgnxc0 267 20 to to IN cord-269150-d1sgnxc0 267 21 the the DT cord-269150-d1sgnxc0 267 22 3 3 CD cord-269150-d1sgnxc0 267 23 0 0 CD cord-269150-d1sgnxc0 267 24 -untranslated -untranslated JJ cord-269150-d1sgnxc0 267 25 region region NN cord-269150-d1sgnxc0 267 26 and and CC cord-269150-d1sgnxc0 267 27 mediates mediate VBZ cord-269150-d1sgnxc0 267 28 potential potential JJ cord-269150-d1sgnxc0 267 29 5'-3 5'-3 CD cord-269150-d1sgnxc0 267 30 0 0 CD cord-269150-d1sgnxc0 268 1 -end -end : cord-269150-d1sgnxc0 268 2 cross cross NN cord-269150-d1sgnxc0 268 3 talks talk NNS cord-269150-d1sgnxc0 268 4 of of IN cord-269150-d1sgnxc0 268 5 mouse mouse NNP cord-269150-d1sgnxc0 268 6 hepatitis hepatitis NNP cord-269150-d1sgnxc0 268 7 virus virus NN cord-269150-d1sgnxc0 268 8 RNA RNA NNP cord-269150-d1sgnxc0 268 9 Heterogeneous Heterogeneous NNP cord-269150-d1sgnxc0 268 10 nuclear nuclear JJ cord-269150-d1sgnxc0 268 11 ribonucleoprotein ribonucleoprotein NN cord-269150-d1sgnxc0 268 12 A1 A1 NNP cord-269150-d1sgnxc0 268 13 regulates regulate VBZ cord-269150-d1sgnxc0 268 14 RNA RNA NNP cord-269150-d1sgnxc0 268 15 synthesis synthesis NN cord-269150-d1sgnxc0 268 16 of of IN cord-269150-d1sgnxc0 268 17 a a DT cord-269150-d1sgnxc0 268 18 cytoplasmic cytoplasmic JJ cord-269150-d1sgnxc0 268 19 virus virus NN cord-269150-d1sgnxc0 268 20 SYNCRIP SYNCRIP NNP cord-269150-d1sgnxc0 268 21 , , , cord-269150-d1sgnxc0 268 22 a a DT cord-269150-d1sgnxc0 268 23 member member NN cord-269150-d1sgnxc0 268 24 of of IN cord-269150-d1sgnxc0 268 25 the the DT cord-269150-d1sgnxc0 268 26 heterogeneous heterogeneous JJ cord-269150-d1sgnxc0 268 27 nuclear nuclear JJ cord-269150-d1sgnxc0 268 28 ribonucleoprotein ribonucleoprotein NN cord-269150-d1sgnxc0 268 29 family family NN cord-269150-d1sgnxc0 268 30 , , , cord-269150-d1sgnxc0 268 31 is be VBZ cord-269150-d1sgnxc0 268 32 involved involve VBN cord-269150-d1sgnxc0 268 33 in in IN cord-269150-d1sgnxc0 268 34 mouse mouse NN cord-269150-d1sgnxc0 268 35 hepatitis hepatitis NNP cord-269150-d1sgnxc0 268 36 virus virus NN cord-269150-d1sgnxc0 268 37 RNA RNA NNP cord-269150-d1sgnxc0 268 38 synthesis synthesis NN cord-269150-d1sgnxc0 268 39 Host Host NNP cord-269150-d1sgnxc0 268 40 cell cell NN cord-269150-d1sgnxc0 268 41 proteins protein NNS cord-269150-d1sgnxc0 268 42 interacting interact VBG cord-269150-d1sgnxc0 268 43 with with IN cord-269150-d1sgnxc0 268 44 the the DT cord-269150-d1sgnxc0 268 45 3 3 CD cord-269150-d1sgnxc0 268 46 0 0 CD cord-269150-d1sgnxc0 268 47 end end NN cord-269150-d1sgnxc0 268 48 of of IN cord-269150-d1sgnxc0 268 49 TGEV TGEV NNP cord-269150-d1sgnxc0 268 50 coronavirus coronavirus NN cord-269150-d1sgnxc0 268 51 genome genome NN cord-269150-d1sgnxc0 268 52 influence influence NN cord-269150-d1sgnxc0 268 53 virus virus NN cord-269150-d1sgnxc0 268 54 replication replication NN cord-269150-d1sgnxc0 269 1 The the DT cord-269150-d1sgnxc0 269 2 cellular cellular JJ cord-269150-d1sgnxc0 269 3 RNA rna NN cord-269150-d1sgnxc0 269 4 helicase helicase NN cord-269150-d1sgnxc0 269 5 DDX1 DDX1 NNP cord-269150-d1sgnxc0 269 6 interacts interact VBZ cord-269150-d1sgnxc0 269 7 with with IN cord-269150-d1sgnxc0 269 8 coronavirus coronavirus NN cord-269150-d1sgnxc0 269 9 nonstructural nonstructural JJ cord-269150-d1sgnxc0 269 10 protein protein NN cord-269150-d1sgnxc0 269 11 14 14 CD cord-269150-d1sgnxc0 269 12 and and CC cord-269150-d1sgnxc0 269 13 enhances enhance VBZ cord-269150-d1sgnxc0 269 14 viral viral JJ cord-269150-d1sgnxc0 269 15 replication replication NN cord-269150-d1sgnxc0 270 1 A a DT cord-269150-d1sgnxc0 270 2 three three CD cord-269150-d1sgnxc0 270 3 - - HYPH cord-269150-d1sgnxc0 270 4 hybrid hybrid NN cord-269150-d1sgnxc0 270 5 screen screen NN cord-269150-d1sgnxc0 270 6 identifies identify VBZ cord-269150-d1sgnxc0 270 7 mRNAs mRNAs NNPS cord-269150-d1sgnxc0 270 8 controlled control VBN cord-269150-d1sgnxc0 270 9 by by IN cord-269150-d1sgnxc0 270 10 a a DT cord-269150-d1sgnxc0 270 11 regulatory regulatory JJ cord-269150-d1sgnxc0 270 12 protein protein NN cord-269150-d1sgnxc0 270 13 Isolation isolation NN cord-269150-d1sgnxc0 270 14 , , , cord-269150-d1sgnxc0 270 15 expression expression NN cord-269150-d1sgnxc0 270 16 , , , cord-269150-d1sgnxc0 270 17 and and CC cord-269150-d1sgnxc0 270 18 characterization characterization NN cord-269150-d1sgnxc0 270 19 of of IN cord-269150-d1sgnxc0 270 20 the the DT cord-269150-d1sgnxc0 270 21 human human JJ cord-269150-d1sgnxc0 270 22 ZCRB1 ZCRB1 `` cord-269150-d1sgnxc0 270 23 gene gene NN cord-269150-d1sgnxc0 270 24 mapped map VBN cord-269150-d1sgnxc0 270 25 to to IN cord-269150-d1sgnxc0 270 26 12q12 12q12 CD cord-269150-d1sgnxc0 270 27 Amino amino NN cord-269150-d1sgnxc0 270 28 acid acid NN cord-269150-d1sgnxc0 270 29 residues residue NNS cord-269150-d1sgnxc0 270 30 critical critical JJ cord-269150-d1sgnxc0 270 31 for for IN cord-269150-d1sgnxc0 270 32 RNA rna NN cord-269150-d1sgnxc0 270 33 - - HYPH cord-269150-d1sgnxc0 270 34 binding bind VBG cord-269150-d1sgnxc0 270 35 in in IN cord-269150-d1sgnxc0 270 36 the the DT cord-269150-d1sgnxc0 270 37 N n CD cord-269150-d1sgnxc0 270 38 - - HYPH cord-269150-d1sgnxc0 270 39 terminal terminal NN cord-269150-d1sgnxc0 270 40 domain domain NN cord-269150-d1sgnxc0 270 41 of of IN cord-269150-d1sgnxc0 270 42 the the DT cord-269150-d1sgnxc0 270 43 nucleocapsid nucleocapsid NNP cord-269150-d1sgnxc0 270 44 protein protein NN cord-269150-d1sgnxc0 270 45 are be VBP cord-269150-d1sgnxc0 270 46 essential essential JJ cord-269150-d1sgnxc0 270 47 determinants determinant NNS cord-269150-d1sgnxc0 270 48 for for IN cord-269150-d1sgnxc0 270 49 the the DT cord-269150-d1sgnxc0 270 50 infectivity infectivity NN cord-269150-d1sgnxc0 270 51 of of IN cord-269150-d1sgnxc0 270 52 coronavirus coronavirus NN cord-269150-d1sgnxc0 270 53 in in IN cord-269150-d1sgnxc0 270 54 cultured cultured JJ cord-269150-d1sgnxc0 270 55 cells cell NNS cord-269150-d1sgnxc0 271 1 The the DT cord-269150-d1sgnxc0 271 2 human human JJ cord-269150-d1sgnxc0 271 3 18S 18S NNP cord-269150-d1sgnxc0 271 4 U11 U11 NNP cord-269150-d1sgnxc0 271 5 / / SYM cord-269150-d1sgnxc0 271 6 U12 U12 NNP cord-269150-d1sgnxc0 271 7 snRNP snrnp NN cord-269150-d1sgnxc0 271 8 contains contain VBZ cord-269150-d1sgnxc0 271 9 a a DT cord-269150-d1sgnxc0 271 10 set set NN cord-269150-d1sgnxc0 271 11 of of IN cord-269150-d1sgnxc0 271 12 novel novel NN cord-269150-d1sgnxc0 271 13 proteins protein NNS cord-269150-d1sgnxc0 271 14 not not RB cord-269150-d1sgnxc0 271 15 found find VBN cord-269150-d1sgnxc0 271 16 in in IN cord-269150-d1sgnxc0 271 17 the the DT cord-269150-d1sgnxc0 271 18 U2-dependent U2-dependent NNP cord-269150-d1sgnxc0 271 19 spliceosome spliceosome NNP cord-269150-d1sgnxc0 272 1 A a DT cord-269150-d1sgnxc0 272 2 U u NN cord-269150-d1sgnxc0 272 3 - - HYPH cord-269150-d1sgnxc0 272 4 turn turn NN cord-269150-d1sgnxc0 272 5 motif motif NN cord-269150-d1sgnxc0 272 6 - - HYPH cord-269150-d1sgnxc0 272 7 containing contain VBG cord-269150-d1sgnxc0 272 8 stem stem NN cord-269150-d1sgnxc0 272 9 - - HYPH cord-269150-d1sgnxc0 272 10 loop loop NN cord-269150-d1sgnxc0 272 11 in in IN cord-269150-d1sgnxc0 272 12 the the DT cord-269150-d1sgnxc0 272 13 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 14 5 5 CD cord-269150-d1sgnxc0 272 15 ' ' POS cord-269150-d1sgnxc0 272 16 untranslated untranslated JJ cord-269150-d1sgnxc0 272 17 region region NN cord-269150-d1sgnxc0 272 18 plays play VBZ cord-269150-d1sgnxc0 272 19 a a DT cord-269150-d1sgnxc0 272 20 functional functional JJ cord-269150-d1sgnxc0 272 21 role role NN cord-269150-d1sgnxc0 272 22 in in IN cord-269150-d1sgnxc0 272 23 replication replication NN cord-269150-d1sgnxc0 272 24 Towards towards IN cord-269150-d1sgnxc0 272 25 construction construction NN cord-269150-d1sgnxc0 272 26 of of IN cord-269150-d1sgnxc0 272 27 viral viral JJ cord-269150-d1sgnxc0 272 28 vectors vector NNS cord-269150-d1sgnxc0 272 29 based base VBN cord-269150-d1sgnxc0 272 30 on on IN cord-269150-d1sgnxc0 272 31 avian avian JJ cord-269150-d1sgnxc0 272 32 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 33 infectious infectious JJ cord-269150-d1sgnxc0 272 34 bronchitis bronchitis NN cord-269150-d1sgnxc0 272 35 virus virus NN cord-269150-d1sgnxc0 272 36 for for IN cord-269150-d1sgnxc0 272 37 gene gene NN cord-269150-d1sgnxc0 272 38 delivery delivery NN cord-269150-d1sgnxc0 272 39 and and CC cord-269150-d1sgnxc0 272 40 vaccine vaccine NN cord-269150-d1sgnxc0 272 41 development development NN cord-269150-d1sgnxc0 272 42 The the DT cord-269150-d1sgnxc0 272 43 nucleocapsid nucleocapsid NN cord-269150-d1sgnxc0 272 44 protein protein NN cord-269150-d1sgnxc0 272 45 of of IN cord-269150-d1sgnxc0 272 46 SARS SARS NNP cord-269150-d1sgnxc0 272 47 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 48 has have VBZ cord-269150-d1sgnxc0 272 49 a a DT cord-269150-d1sgnxc0 272 50 high high JJ cord-269150-d1sgnxc0 272 51 binding bind VBG cord-269150-d1sgnxc0 272 52 affinity affinity NN cord-269150-d1sgnxc0 272 53 to to IN cord-269150-d1sgnxc0 272 54 the the DT cord-269150-d1sgnxc0 272 55 human human JJ cord-269150-d1sgnxc0 272 56 cellular cellular JJ cord-269150-d1sgnxc0 272 57 heterogeneous heterogeneous JJ cord-269150-d1sgnxc0 272 58 nuclear nuclear JJ cord-269150-d1sgnxc0 272 59 ribonucleoprotein ribonucleoprotein NN cord-269150-d1sgnxc0 272 60 A1 A1 NNP cord-269150-d1sgnxc0 272 61 Host Host NNP cord-269150-d1sgnxc0 272 62 protein protein NN cord-269150-d1sgnxc0 272 63 interactions interaction NNS cord-269150-d1sgnxc0 272 64 with with IN cord-269150-d1sgnxc0 272 65 the the DT cord-269150-d1sgnxc0 272 66 3 3 CD cord-269150-d1sgnxc0 272 67 0 0 CD cord-269150-d1sgnxc0 272 68 end end NN cord-269150-d1sgnxc0 272 69 of of IN cord-269150-d1sgnxc0 272 70 bovine bovine JJ cord-269150-d1sgnxc0 272 71 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 72 RNA RNA NNP cord-269150-d1sgnxc0 272 73 and and CC cord-269150-d1sgnxc0 272 74 the the DT cord-269150-d1sgnxc0 272 75 requirement requirement NN cord-269150-d1sgnxc0 272 76 of of IN cord-269150-d1sgnxc0 272 77 the the DT cord-269150-d1sgnxc0 272 78 poly(A poly(a JJ cord-269150-d1sgnxc0 272 79 ) ) -RRB- cord-269150-d1sgnxc0 272 80 tail tail NN cord-269150-d1sgnxc0 272 81 for for IN cord-269150-d1sgnxc0 272 82 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 83 defective defective JJ cord-269150-d1sgnxc0 272 84 genome genome NN cord-269150-d1sgnxc0 272 85 replication replication NN cord-269150-d1sgnxc0 272 86 Mitochondrial mitochondrial JJ cord-269150-d1sgnxc0 272 87 HSP70 HSP70 NNP cord-269150-d1sgnxc0 272 88 , , , cord-269150-d1sgnxc0 272 89 HSP40 HSP40 NNP cord-269150-d1sgnxc0 272 90 , , , cord-269150-d1sgnxc0 272 91 and and CC cord-269150-d1sgnxc0 272 92 HSP60 hsp60 PRP cord-269150-d1sgnxc0 272 93 bind bind VB cord-269150-d1sgnxc0 272 94 to to IN cord-269150-d1sgnxc0 272 95 the the DT cord-269150-d1sgnxc0 272 96 3 3 CD cord-269150-d1sgnxc0 272 97 0 0 CD cord-269150-d1sgnxc0 272 98 untranslated untranslated JJ cord-269150-d1sgnxc0 272 99 region region NN cord-269150-d1sgnxc0 272 100 of of IN cord-269150-d1sgnxc0 272 101 the the DT cord-269150-d1sgnxc0 272 102 Murine Murine NNP cord-269150-d1sgnxc0 272 103 hepatitis hepatitis NN cord-269150-d1sgnxc0 272 104 virus virus NN cord-269150-d1sgnxc0 272 105 genome genome NN cord-269150-d1sgnxc0 272 106 Mitochondrial mitochondrial JJ cord-269150-d1sgnxc0 272 107 aconitase aconitase NN cord-269150-d1sgnxc0 272 108 binds bind VBZ cord-269150-d1sgnxc0 272 109 to to IN cord-269150-d1sgnxc0 272 110 the the DT cord-269150-d1sgnxc0 272 111 3 3 CD cord-269150-d1sgnxc0 272 112 0 0 CD cord-269150-d1sgnxc0 272 113 untranslated untranslated JJ cord-269150-d1sgnxc0 272 114 region region NN cord-269150-d1sgnxc0 272 115 of of IN cord-269150-d1sgnxc0 272 116 the the DT cord-269150-d1sgnxc0 272 117 mouse mouse NN cord-269150-d1sgnxc0 272 118 hepatitis hepatitis NNP cord-269150-d1sgnxc0 272 119 virus virus NN cord-269150-d1sgnxc0 272 120 genome genome NN cord-269150-d1sgnxc0 272 121 Structural structural JJ cord-269150-d1sgnxc0 272 122 lability lability NN cord-269150-d1sgnxc0 272 123 in in IN cord-269150-d1sgnxc0 272 124 stem stem NN cord-269150-d1sgnxc0 272 125 - - HYPH cord-269150-d1sgnxc0 272 126 loop loop NN cord-269150-d1sgnxc0 272 127 1 1 CD cord-269150-d1sgnxc0 272 128 drives drive NNS cord-269150-d1sgnxc0 272 129 a a DT cord-269150-d1sgnxc0 272 130 5 5 CD cord-269150-d1sgnxc0 272 131 0 0 CD cord-269150-d1sgnxc0 272 132 UTR-3 UTR-3 NNP cord-269150-d1sgnxc0 272 133 ' ' '' cord-269150-d1sgnxc0 272 134 UTR UTR NNP cord-269150-d1sgnxc0 272 135 interaction interaction NN cord-269150-d1sgnxc0 272 136 in in IN cord-269150-d1sgnxc0 272 137 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 138 replication replication NN cord-269150-d1sgnxc0 272 139 Selective selective JJ cord-269150-d1sgnxc0 272 140 replication replication NN cord-269150-d1sgnxc0 272 141 of of IN cord-269150-d1sgnxc0 272 142 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 143 genomes genome NNS cord-269150-d1sgnxc0 272 144 that that WDT cord-269150-d1sgnxc0 272 145 express express VBP cord-269150-d1sgnxc0 272 146 nucleocapsid nucleocapsid NNP cord-269150-d1sgnxc0 272 147 protein protein NN cord-269150-d1sgnxc0 272 148 Group Group NNP cord-269150-d1sgnxc0 272 149 - - HYPH cord-269150-d1sgnxc0 272 150 specific specific JJ cord-269150-d1sgnxc0 272 151 structural structural JJ cord-269150-d1sgnxc0 272 152 features feature NNS cord-269150-d1sgnxc0 272 153 of of IN cord-269150-d1sgnxc0 272 154 the the DT cord-269150-d1sgnxc0 272 155 5 5 CD cord-269150-d1sgnxc0 272 156 0 0 CD cord-269150-d1sgnxc0 272 157 -proximal -proximal JJS cord-269150-d1sgnxc0 272 158 sequences sequence NNS cord-269150-d1sgnxc0 272 159 of of IN cord-269150-d1sgnxc0 272 160 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 161 genomic genomic JJ cord-269150-d1sgnxc0 272 162 RNAs rna NNS cord-269150-d1sgnxc0 272 163 Membrane Membrane NNP cord-269150-d1sgnxc0 272 164 association association NN cord-269150-d1sgnxc0 272 165 and and CC cord-269150-d1sgnxc0 272 166 dimerization dimerization NN cord-269150-d1sgnxc0 272 167 of of IN cord-269150-d1sgnxc0 272 168 a a DT cord-269150-d1sgnxc0 272 169 cysteine cysteine NN cord-269150-d1sgnxc0 272 170 - - HYPH cord-269150-d1sgnxc0 272 171 rich rich JJ cord-269150-d1sgnxc0 272 172 , , , cord-269150-d1sgnxc0 272 173 16-kilodalton 16-kilodalton CD cord-269150-d1sgnxc0 272 174 polypeptide polypeptide NN cord-269150-d1sgnxc0 272 175 released release VBN cord-269150-d1sgnxc0 272 176 from from IN cord-269150-d1sgnxc0 272 177 the the DT cord-269150-d1sgnxc0 272 178 C C NNP cord-269150-d1sgnxc0 272 179 - - HYPH cord-269150-d1sgnxc0 272 180 terminal terminal NN cord-269150-d1sgnxc0 272 181 region region NN cord-269150-d1sgnxc0 272 182 of of IN cord-269150-d1sgnxc0 272 183 the the DT cord-269150-d1sgnxc0 272 184 coronavirus coronavirus NN cord-269150-d1sgnxc0 272 185 infectious infectious JJ cord-269150-d1sgnxc0 272 186 bronchitis bronchitis NN cord-269150-d1sgnxc0 272 187 virus virus NN cord-269150-d1sgnxc0 272 188 1a 1a CD cord-269150-d1sgnxc0 273 1 polyprotein polyprotein NNP cord-269150-d1sgnxc0 274 1 Further further JJ cord-269150-d1sgnxc0 274 2 identification identification NN cord-269150-d1sgnxc0 274 3 and and CC cord-269150-d1sgnxc0 274 4 characterization characterization NN cord-269150-d1sgnxc0 274 5 of of IN cord-269150-d1sgnxc0 274 6 novel novel NN cord-269150-d1sgnxc0 274 7 intermediate intermediate JJ cord-269150-d1sgnxc0 274 8 and and CC cord-269150-d1sgnxc0 274 9 mature mature JJ cord-269150-d1sgnxc0 274 10 cleavage cleavage NN cord-269150-d1sgnxc0 274 11 products product NNS cord-269150-d1sgnxc0 274 12 released release VBN cord-269150-d1sgnxc0 274 13 from from IN cord-269150-d1sgnxc0 274 14 the the DT cord-269150-d1sgnxc0 274 15 ORF ORF NNP cord-269150-d1sgnxc0 274 16 1b 1b CD cord-269150-d1sgnxc0 274 17 region region NN cord-269150-d1sgnxc0 274 18 of of IN cord-269150-d1sgnxc0 274 19 the the DT cord-269150-d1sgnxc0 274 20 avian avian JJ cord-269150-d1sgnxc0 274 21 coronavirus coronavirus NN cord-269150-d1sgnxc0 274 22 infectious infectious JJ cord-269150-d1sgnxc0 274 23 bronchitis bronchitis NN cord-269150-d1sgnxc0 274 24 virus virus NN cord-269150-d1sgnxc0 275 1 1a/1b 1a/1b CD cord-269150-d1sgnxc0 275 2 polyprotein polyprotein NNP cord-269150-d1sgnxc0 276 1 Further further JJ cord-269150-d1sgnxc0 276 2 characterization characterization NN cord-269150-d1sgnxc0 276 3 of of IN cord-269150-d1sgnxc0 276 4 the the DT cord-269150-d1sgnxc0 276 5 coronavirus coronavirus NN cord-269150-d1sgnxc0 276 6 infectious infectious JJ cord-269150-d1sgnxc0 276 7 bronchitis bronchitis NN cord-269150-d1sgnxc0 276 8 virus virus NN cord-269150-d1sgnxc0 276 9 3C 3c NN cord-269150-d1sgnxc0 276 10 - - HYPH cord-269150-d1sgnxc0 276 11 like like JJ cord-269150-d1sgnxc0 276 12 proteinase proteinase NN cord-269150-d1sgnxc0 276 13 and and CC cord-269150-d1sgnxc0 276 14 determination determination NN cord-269150-d1sgnxc0 276 15 of of IN cord-269150-d1sgnxc0 276 16 a a DT cord-269150-d1sgnxc0 276 17 new new JJ cord-269150-d1sgnxc0 276 18 cleavage cleavage NN cord-269150-d1sgnxc0 276 19 site site NN cord-269150-d1sgnxc0 276 20 Sumoylation Sumoylation NNP cord-269150-d1sgnxc0 276 21 of of IN cord-269150-d1sgnxc0 276 22 the the DT cord-269150-d1sgnxc0 276 23 nucleocapsid nucleocapsid NNP cord-269150-d1sgnxc0 276 24 protein protein NN cord-269150-d1sgnxc0 276 25 of of IN cord-269150-d1sgnxc0 276 26 severe severe JJ cord-269150-d1sgnxc0 276 27 acute acute JJ cord-269150-d1sgnxc0 276 28 respiratory respiratory JJ cord-269150-d1sgnxc0 276 29 syndrome syndrome NN cord-269150-d1sgnxc0 276 30 coronavirus coronavirus NN cord-269150-d1sgnxc0 277 1 The the DT cord-269150-d1sgnxc0 277 2 coronavirus coronavirus NN cord-269150-d1sgnxc0 277 3 infectious infectious JJ cord-269150-d1sgnxc0 277 4 bronchitis bronchitis NN cord-269150-d1sgnxc0 277 5 virus virus NN cord-269150-d1sgnxc0 277 6 nucleoprotein nucleoprotein NNP cord-269150-d1sgnxc0 277 7 localizes localize VBZ cord-269150-d1sgnxc0 277 8 to to IN cord-269150-d1sgnxc0 277 9 the the DT cord-269150-d1sgnxc0 277 10 nucleolus nucleolus NN cord-269150-d1sgnxc0 277 11 Conflict conflict NN cord-269150-d1sgnxc0 277 12 of of IN cord-269150-d1sgnxc0 277 13 interest interest NN cord-269150-d1sgnxc0 277 14 statement statement NN cord-269150-d1sgnxc0 277 15 . . . cord-269150-d1sgnxc0 278 1 None none NN cord-269150-d1sgnxc0 278 2 declared declare VBD cord-269150-d1sgnxc0 278 3 . . .