id sid tid token lemma pos cord-002530-ao7kenbx 1 1 key key JJ cord-002530-ao7kenbx 1 2 : : : cord-002530-ao7kenbx 1 3 cord-002530-ao7kenbx cord-002530-ao7kenbx NFP cord-002530-ao7kenbx 1 4 authors author NNS cord-002530-ao7kenbx 1 5 : : : cord-002530-ao7kenbx 1 6 Lin Lin NNP cord-002530-ao7kenbx 1 7 , , , cord-002530-ao7kenbx 1 8 Yao Yao NNP cord-002530-ao7kenbx 1 9 - - HYPH cord-002530-ao7kenbx 1 10 Tang Tang NNP cord-002530-ao7kenbx 1 11 ; ; : cord-002530-ao7kenbx 1 12 Prendergast Prendergast NNP cord-002530-ao7kenbx 1 13 , , , cord-002530-ao7kenbx 1 14 James James NNP cord-002530-ao7kenbx 1 15 ; ; : cord-002530-ao7kenbx 1 16 Grey Grey NNP cord-002530-ao7kenbx 1 17 , , , cord-002530-ao7kenbx 1 18 Finn Finn NNP cord-002530-ao7kenbx 2 1 title title NN cord-002530-ao7kenbx 2 2 : : : cord-002530-ao7kenbx 3 1 The the DT cord-002530-ao7kenbx 3 2 host host NN cord-002530-ao7kenbx 3 3 ubiquitin ubiquitin NN cord-002530-ao7kenbx 3 4 - - HYPH cord-002530-ao7kenbx 3 5 dependent dependent JJ cord-002530-ao7kenbx 3 6 segregase segregase NN cord-002530-ao7kenbx 3 7 VCP VCP NNP cord-002530-ao7kenbx 3 8 / / SYM cord-002530-ao7kenbx 3 9 p97 p97 CD cord-002530-ao7kenbx 3 10 is be VBZ cord-002530-ao7kenbx 3 11 required require VBN cord-002530-ao7kenbx 3 12 for for IN cord-002530-ao7kenbx 3 13 the the DT cord-002530-ao7kenbx 3 14 onset onset NN cord-002530-ao7kenbx 3 15 of of IN cord-002530-ao7kenbx 3 16 human human JJ cord-002530-ao7kenbx 3 17 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 3 18 replication replication NN cord-002530-ao7kenbx 3 19 date date NN cord-002530-ao7kenbx 3 20 : : : cord-002530-ao7kenbx 3 21 2017 2017 CD cord-002530-ao7kenbx 3 22 - - HYPH cord-002530-ao7kenbx 3 23 05 05 CD cord-002530-ao7kenbx 3 24 - - HYPH cord-002530-ao7kenbx 3 25 11 11 CD cord-002530-ao7kenbx 3 26 journal journal NN cord-002530-ao7kenbx 3 27 : : : cord-002530-ao7kenbx 3 28 PLoS PLoS NNP cord-002530-ao7kenbx 3 29 Pathog Pathog NNP cord-002530-ao7kenbx 3 30 DOI DOI NNP cord-002530-ao7kenbx 3 31 : : : cord-002530-ao7kenbx 3 32 10.1371 10.1371 CD cord-002530-ao7kenbx 3 33 / / SYM cord-002530-ao7kenbx 3 34 journal.ppat.1006329 journal.ppat.1006329 NNP cord-002530-ao7kenbx 3 35 sha sha NNP cord-002530-ao7kenbx 3 36 : : : cord-002530-ao7kenbx 3 37 621c8306765f418717c3de4497c2dace5f8a9c73 621c8306765f418717c3de4497c2dace5f8a9c73 CD cord-002530-ao7kenbx 3 38 doc_id doc_id CD cord-002530-ao7kenbx 3 39 : : : cord-002530-ao7kenbx 3 40 2530 2530 CD cord-002530-ao7kenbx 3 41 cord_uid cord_uid NNS cord-002530-ao7kenbx 3 42 : : : cord-002530-ao7kenbx 4 1 ao7kenbx ao7kenbx . cord-002530-ao7kenbx 5 1 The the DT cord-002530-ao7kenbx 5 2 human human JJ cord-002530-ao7kenbx 5 3 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 5 4 major major JJ cord-002530-ao7kenbx 5 5 immediate immediate JJ cord-002530-ao7kenbx 5 6 early early JJ cord-002530-ao7kenbx 5 7 proteins protein NNS cord-002530-ao7kenbx 5 8 IE1 ie1 NN cord-002530-ao7kenbx 5 9 and and CC cord-002530-ao7kenbx 5 10 IE2 ie2 NN cord-002530-ao7kenbx 5 11 are be VBP cord-002530-ao7kenbx 5 12 critical critical JJ cord-002530-ao7kenbx 5 13 drivers driver NNS cord-002530-ao7kenbx 5 14 of of IN cord-002530-ao7kenbx 5 15 virus virus NN cord-002530-ao7kenbx 5 16 replication replication NN cord-002530-ao7kenbx 5 17 and and CC cord-002530-ao7kenbx 5 18 are be VBP cord-002530-ao7kenbx 5 19 considered consider VBN cord-002530-ao7kenbx 5 20 pivotal pivotal JJ cord-002530-ao7kenbx 5 21 in in IN cord-002530-ao7kenbx 5 22 determining determine VBG cord-002530-ao7kenbx 5 23 the the DT cord-002530-ao7kenbx 5 24 balance balance NN cord-002530-ao7kenbx 5 25 between between IN cord-002530-ao7kenbx 5 26 productive productive JJ cord-002530-ao7kenbx 5 27 and and CC cord-002530-ao7kenbx 5 28 latent latent JJ cord-002530-ao7kenbx 5 29 infection infection NN cord-002530-ao7kenbx 5 30 . . . cord-002530-ao7kenbx 6 1 IE1 ie1 NN cord-002530-ao7kenbx 6 2 and and CC cord-002530-ao7kenbx 6 3 IE2 ie2 NN cord-002530-ao7kenbx 6 4 are be VBP cord-002530-ao7kenbx 6 5 derived derive VBN cord-002530-ao7kenbx 6 6 from from IN cord-002530-ao7kenbx 6 7 the the DT cord-002530-ao7kenbx 6 8 same same JJ cord-002530-ao7kenbx 6 9 primary primary JJ cord-002530-ao7kenbx 6 10 transcript transcript NN cord-002530-ao7kenbx 6 11 by by IN cord-002530-ao7kenbx 6 12 alternative alternative JJ cord-002530-ao7kenbx 6 13 splicing splicing NN cord-002530-ao7kenbx 6 14 and and CC cord-002530-ao7kenbx 6 15 regulation regulation NN cord-002530-ao7kenbx 6 16 of of IN cord-002530-ao7kenbx 6 17 their -PRON- PRP$ cord-002530-ao7kenbx 6 18 expression expression NN cord-002530-ao7kenbx 6 19 likely likely RB cord-002530-ao7kenbx 6 20 involves involve VBZ cord-002530-ao7kenbx 6 21 a a DT cord-002530-ao7kenbx 6 22 complex complex JJ cord-002530-ao7kenbx 6 23 interplay interplay NN cord-002530-ao7kenbx 6 24 between between IN cord-002530-ao7kenbx 6 25 cellular cellular JJ cord-002530-ao7kenbx 6 26 and and CC cord-002530-ao7kenbx 6 27 viral viral JJ cord-002530-ao7kenbx 6 28 factors factor NNS cord-002530-ao7kenbx 6 29 . . . cord-002530-ao7kenbx 7 1 Here here RB cord-002530-ao7kenbx 7 2 we -PRON- PRP cord-002530-ao7kenbx 7 3 show show VBP cord-002530-ao7kenbx 7 4 that that IN cord-002530-ao7kenbx 7 5 knockdown knockdown NN cord-002530-ao7kenbx 7 6 of of IN cord-002530-ao7kenbx 7 7 the the DT cord-002530-ao7kenbx 7 8 host host NN cord-002530-ao7kenbx 7 9 ubiquitin ubiquitin NN cord-002530-ao7kenbx 7 10 - - HYPH cord-002530-ao7kenbx 7 11 dependent dependent JJ cord-002530-ao7kenbx 7 12 segregase segregase NN cord-002530-ao7kenbx 7 13 VCP VCP NNP cord-002530-ao7kenbx 7 14 / / SYM cord-002530-ao7kenbx 7 15 p97 p97 CD cord-002530-ao7kenbx 7 16 , , , cord-002530-ao7kenbx 7 17 results result NNS cord-002530-ao7kenbx 7 18 in in IN cord-002530-ao7kenbx 7 19 loss loss NN cord-002530-ao7kenbx 7 20 of of IN cord-002530-ao7kenbx 7 21 IE2 ie2 JJ cord-002530-ao7kenbx 7 22 expression expression NN cord-002530-ao7kenbx 7 23 , , , cord-002530-ao7kenbx 7 24 subsequent subsequent JJ cord-002530-ao7kenbx 7 25 suppression suppression NN cord-002530-ao7kenbx 7 26 of of IN cord-002530-ao7kenbx 7 27 early early JJ cord-002530-ao7kenbx 7 28 and and CC cord-002530-ao7kenbx 7 29 late late JJ cord-002530-ao7kenbx 7 30 gene gene NN cord-002530-ao7kenbx 7 31 expression expression NN cord-002530-ao7kenbx 7 32 and and CC cord-002530-ao7kenbx 7 33 , , , cord-002530-ao7kenbx 7 34 ultimately ultimately RB cord-002530-ao7kenbx 7 35 , , , cord-002530-ao7kenbx 7 36 failure failure NN cord-002530-ao7kenbx 7 37 in in IN cord-002530-ao7kenbx 7 38 virus virus NN cord-002530-ao7kenbx 7 39 replication replication NN cord-002530-ao7kenbx 7 40 . . . cord-002530-ao7kenbx 8 1 RNAseq RNAseq NNP cord-002530-ao7kenbx 8 2 analysis analysis NN cord-002530-ao7kenbx 8 3 showed show VBD cord-002530-ao7kenbx 8 4 increased increase VBN cord-002530-ao7kenbx 8 5 levels level NNS cord-002530-ao7kenbx 8 6 of of IN cord-002530-ao7kenbx 8 7 IE1 ie1 NN cord-002530-ao7kenbx 8 8 splicing splicing NN cord-002530-ao7kenbx 8 9 , , , cord-002530-ao7kenbx 8 10 with with IN cord-002530-ao7kenbx 8 11 a a DT cord-002530-ao7kenbx 8 12 corresponding corresponding JJ cord-002530-ao7kenbx 8 13 decrease decrease NN cord-002530-ao7kenbx 8 14 in in IN cord-002530-ao7kenbx 8 15 IE2 ie2 NN cord-002530-ao7kenbx 8 16 splicing splicing NN cord-002530-ao7kenbx 8 17 following follow VBG cord-002530-ao7kenbx 8 18 VCP VCP NNP cord-002530-ao7kenbx 8 19 knockdown knockdown NN cord-002530-ao7kenbx 8 20 . . . cord-002530-ao7kenbx 9 1 Global global JJ cord-002530-ao7kenbx 9 2 analysis analysis NN cord-002530-ao7kenbx 9 3 of of IN cord-002530-ao7kenbx 9 4 viral viral JJ cord-002530-ao7kenbx 9 5 transcription transcription NN cord-002530-ao7kenbx 9 6 showed show VBD cord-002530-ao7kenbx 9 7 the the DT cord-002530-ao7kenbx 9 8 expression expression NN cord-002530-ao7kenbx 9 9 of of IN cord-002530-ao7kenbx 9 10 a a DT cord-002530-ao7kenbx 9 11 subset subset NN cord-002530-ao7kenbx 9 12 of of IN cord-002530-ao7kenbx 9 13 viral viral JJ cord-002530-ao7kenbx 9 14 genes gene NNS cord-002530-ao7kenbx 9 15 is be VBZ cord-002530-ao7kenbx 9 16 not not RB cord-002530-ao7kenbx 9 17 reduced reduce VBN cord-002530-ao7kenbx 9 18 despite despite IN cord-002530-ao7kenbx 9 19 the the DT cord-002530-ao7kenbx 9 20 loss loss NN cord-002530-ao7kenbx 9 21 of of IN cord-002530-ao7kenbx 9 22 IE2 ie2 JJ cord-002530-ao7kenbx 9 23 expression expression NN cord-002530-ao7kenbx 9 24 , , , cord-002530-ao7kenbx 9 25 including include VBG cord-002530-ao7kenbx 9 26 UL112/113 ul112/113 CD cord-002530-ao7kenbx 9 27 . . . cord-002530-ao7kenbx 10 1 Furthermore furthermore RB cord-002530-ao7kenbx 10 2 , , , cord-002530-ao7kenbx 10 3 Immunofluorescence Immunofluorescence NNP cord-002530-ao7kenbx 10 4 studies study NNS cord-002530-ao7kenbx 10 5 demonstrated demonstrate VBD cord-002530-ao7kenbx 10 6 that that IN cord-002530-ao7kenbx 10 7 VCP VCP NNP cord-002530-ao7kenbx 10 8 strongly strongly RB cord-002530-ao7kenbx 10 9 colocalised colocalise VBN cord-002530-ao7kenbx 10 10 with with IN cord-002530-ao7kenbx 10 11 the the DT cord-002530-ao7kenbx 10 12 viral viral JJ cord-002530-ao7kenbx 10 13 replication replication NN cord-002530-ao7kenbx 10 14 compartments compartment NNS cord-002530-ao7kenbx 10 15 in in IN cord-002530-ao7kenbx 10 16 the the DT cord-002530-ao7kenbx 10 17 nucleus nucleus NN cord-002530-ao7kenbx 10 18 . . . cord-002530-ao7kenbx 11 1 Finally finally RB cord-002530-ao7kenbx 11 2 , , , cord-002530-ao7kenbx 11 3 we -PRON- PRP cord-002530-ao7kenbx 11 4 show show VBP cord-002530-ao7kenbx 11 5 that that IN cord-002530-ao7kenbx 11 6 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 11 7 , , , cord-002530-ao7kenbx 11 8 a a DT cord-002530-ao7kenbx 11 9 small small JJ cord-002530-ao7kenbx 11 10 molecule molecule NN cord-002530-ao7kenbx 11 11 inhibitor inhibitor NN cord-002530-ao7kenbx 11 12 of of IN cord-002530-ao7kenbx 11 13 VCP VCP NNP cord-002530-ao7kenbx 11 14 , , , cord-002530-ao7kenbx 11 15 is be VBZ cord-002530-ao7kenbx 11 16 a a DT cord-002530-ao7kenbx 11 17 potent potent JJ cord-002530-ao7kenbx 11 18 HCMV hcmv NN cord-002530-ao7kenbx 11 19 antiviral antiviral JJ cord-002530-ao7kenbx 11 20 with with IN cord-002530-ao7kenbx 11 21 potential potential NN cord-002530-ao7kenbx 11 22 as as IN cord-002530-ao7kenbx 11 23 a a DT cord-002530-ao7kenbx 11 24 novel novel JJ cord-002530-ao7kenbx 11 25 host host NN cord-002530-ao7kenbx 11 26 targeting target VBG cord-002530-ao7kenbx 11 27 therapeutic therapeutic JJ cord-002530-ao7kenbx 11 28 for for IN cord-002530-ao7kenbx 11 29 HCMV HCMV NNP cord-002530-ao7kenbx 11 30 infection infection NN cord-002530-ao7kenbx 11 31 . . . cord-002530-ao7kenbx 12 1 Viruses virus NNS cord-002530-ao7kenbx 12 2 are be VBP cord-002530-ao7kenbx 12 3 obligate obligate VBN cord-002530-ao7kenbx 12 4 intracellular intracellular JJ cord-002530-ao7kenbx 12 5 pathogens pathogen NNS cord-002530-ao7kenbx 12 6 , , , cord-002530-ao7kenbx 12 7 meaning mean VBG cord-002530-ao7kenbx 12 8 that that IN cord-002530-ao7kenbx 12 9 they -PRON- PRP cord-002530-ao7kenbx 12 10 are be VBP cord-002530-ao7kenbx 12 11 completely completely RB cord-002530-ao7kenbx 12 12 dependent dependent JJ cord-002530-ao7kenbx 12 13 on on IN cord-002530-ao7kenbx 12 14 the the DT cord-002530-ao7kenbx 12 15 host host NN cord-002530-ao7kenbx 12 16 cellular cellular JJ cord-002530-ao7kenbx 12 17 machinery machinery NN cord-002530-ao7kenbx 12 18 to to TO cord-002530-ao7kenbx 12 19 replicate replicate VB cord-002530-ao7kenbx 12 20 . . . cord-002530-ao7kenbx 13 1 Identifying identify VBG cord-002530-ao7kenbx 13 2 which which WDT cord-002530-ao7kenbx 13 3 host host NN cord-002530-ao7kenbx 13 4 genes gene NNS cord-002530-ao7kenbx 13 5 are be VBP cord-002530-ao7kenbx 13 6 necessary necessary JJ cord-002530-ao7kenbx 13 7 for for IN cord-002530-ao7kenbx 13 8 virus virus NN cord-002530-ao7kenbx 13 9 replication replication NN cord-002530-ao7kenbx 13 10 extends extend VBZ cord-002530-ao7kenbx 13 11 our -PRON- PRP$ cord-002530-ao7kenbx 13 12 understanding understanding NN cord-002530-ao7kenbx 13 13 of of IN cord-002530-ao7kenbx 13 14 how how WRB cord-002530-ao7kenbx 13 15 viruses virus NNS cord-002530-ao7kenbx 13 16 replicate replicate VBP cord-002530-ao7kenbx 13 17 , , , cord-002530-ao7kenbx 13 18 how how WRB cord-002530-ao7kenbx 13 19 cells cell NNS cord-002530-ao7kenbx 13 20 function function VBP cord-002530-ao7kenbx 13 21 and and CC cord-002530-ao7kenbx 13 22 provides provide VBZ cord-002530-ao7kenbx 13 23 potential potential JJ cord-002530-ao7kenbx 13 24 targets target NNS cord-002530-ao7kenbx 13 25 for for IN cord-002530-ao7kenbx 13 26 novel novel JJ cord-002530-ao7kenbx 13 27 antivirals antiviral NNS cord-002530-ao7kenbx 13 28 . . . cord-002530-ao7kenbx 14 1 Here here RB cord-002530-ao7kenbx 14 2 , , , cord-002530-ao7kenbx 14 3 we -PRON- PRP cord-002530-ao7kenbx 14 4 show show VBP cord-002530-ao7kenbx 14 5 that that IN cord-002530-ao7kenbx 14 6 a a DT cord-002530-ao7kenbx 14 7 cellular cellular JJ cord-002530-ao7kenbx 14 8 factor factor NN cord-002530-ao7kenbx 14 9 called call VBN cord-002530-ao7kenbx 14 10 valosin valosin NNP cord-002530-ao7kenbx 14 11 containing contain VBG cord-002530-ao7kenbx 14 12 protein protein NN cord-002530-ao7kenbx 14 13 ( ( -LRB- cord-002530-ao7kenbx 14 14 VCP VCP NNP cord-002530-ao7kenbx 14 15 ) ) -RRB- cord-002530-ao7kenbx 14 16 is be VBZ cord-002530-ao7kenbx 14 17 essential essential JJ cord-002530-ao7kenbx 14 18 for for IN cord-002530-ao7kenbx 14 19 human human JJ cord-002530-ao7kenbx 14 20 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 14 21 replication replication NN cord-002530-ao7kenbx 14 22 . . . cord-002530-ao7kenbx 15 1 We -PRON- PRP cord-002530-ao7kenbx 15 2 demonstrate demonstrate VBP cord-002530-ao7kenbx 15 3 that that IN cord-002530-ao7kenbx 15 4 VCP VCP NNP cord-002530-ao7kenbx 15 5 is be VBZ cord-002530-ao7kenbx 15 6 required require VBN cord-002530-ao7kenbx 15 7 for for IN cord-002530-ao7kenbx 15 8 the the DT cord-002530-ao7kenbx 15 9 expression expression NN cord-002530-ao7kenbx 15 10 of of IN cord-002530-ao7kenbx 15 11 an an DT cord-002530-ao7kenbx 15 12 essential essential JJ cord-002530-ao7kenbx 15 13 virus virus NN cord-002530-ao7kenbx 15 14 gene gene NN cord-002530-ao7kenbx 15 15 called call VBN cord-002530-ao7kenbx 15 16 IE2 IE2 NNP cord-002530-ao7kenbx 15 17 . . . cord-002530-ao7kenbx 16 1 Finally finally RB cord-002530-ao7kenbx 16 2 we -PRON- PRP cord-002530-ao7kenbx 16 3 show show VBP cord-002530-ao7kenbx 16 4 that that IN cord-002530-ao7kenbx 16 5 a a DT cord-002530-ao7kenbx 16 6 chemical chemical JJ cord-002530-ao7kenbx 16 7 inhibitor inhibitor NN cord-002530-ao7kenbx 16 8 of of IN cord-002530-ao7kenbx 16 9 VCP VCP NNP cord-002530-ao7kenbx 16 10 is be VBZ cord-002530-ao7kenbx 16 11 a a DT cord-002530-ao7kenbx 16 12 potent potent JJ cord-002530-ao7kenbx 16 13 antiviral antiviral JJ cord-002530-ao7kenbx 16 14 against against IN cord-002530-ao7kenbx 16 15 human human JJ cord-002530-ao7kenbx 16 16 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 16 17 , , , cord-002530-ao7kenbx 16 18 demonstrating demonstrate VBG cord-002530-ao7kenbx 16 19 the the DT cord-002530-ao7kenbx 16 20 potential potential NN cord-002530-ao7kenbx 16 21 for for IN cord-002530-ao7kenbx 16 22 VCP VCP NNP cord-002530-ao7kenbx 16 23 inhibitors inhibitor NNS cord-002530-ao7kenbx 16 24 as as IN cord-002530-ao7kenbx 16 25 novel novel JJ cord-002530-ao7kenbx 16 26 therapeutics therapeutic NNS cord-002530-ao7kenbx 16 27 against against IN cord-002530-ao7kenbx 16 28 this this DT cord-002530-ao7kenbx 16 29 virus virus NN cord-002530-ao7kenbx 16 30 . . . cord-002530-ao7kenbx 17 1 Human human JJ cord-002530-ao7kenbx 17 2 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 17 3 ( ( -LRB- cord-002530-ao7kenbx 17 4 HCMV HCMV NNP cord-002530-ao7kenbx 17 5 ) ) -RRB- cord-002530-ao7kenbx 17 6 is be VBZ cord-002530-ao7kenbx 17 7 a a DT cord-002530-ao7kenbx 17 8 highly highly RB cord-002530-ao7kenbx 17 9 prevalent prevalent JJ cord-002530-ao7kenbx 17 10 herpesvirus herpesvirus NN cord-002530-ao7kenbx 17 11 , , , cord-002530-ao7kenbx 17 12 infecting infect VBG cord-002530-ao7kenbx 17 13 30 30 CD cord-002530-ao7kenbx 17 14 to to TO cord-002530-ao7kenbx 17 15 100 100 CD cord-002530-ao7kenbx 17 16 % % NN cord-002530-ao7kenbx 17 17 of of IN cord-002530-ao7kenbx 17 18 the the DT cord-002530-ao7kenbx 17 19 global global JJ cord-002530-ao7kenbx 17 20 population population NN cord-002530-ao7kenbx 17 21 depending depend VBG cord-002530-ao7kenbx 17 22 on on IN cord-002530-ao7kenbx 17 23 the the DT cord-002530-ao7kenbx 17 24 socio socio JJ cord-002530-ao7kenbx 17 25 - - JJ cord-002530-ao7kenbx 17 26 economic economic JJ cord-002530-ao7kenbx 17 27 status status NN cord-002530-ao7kenbx 17 28 . . . cord-002530-ao7kenbx 18 1 Although although IN cord-002530-ao7kenbx 18 2 normally normally RB cord-002530-ao7kenbx 18 3 asymptomatic asymptomatic JJ cord-002530-ao7kenbx 18 4 in in IN cord-002530-ao7kenbx 18 5 healthy healthy JJ cord-002530-ao7kenbx 18 6 individuals individual NNS cord-002530-ao7kenbx 18 7 , , , cord-002530-ao7kenbx 18 8 HCMV HCMV NNP cord-002530-ao7kenbx 18 9 infection infection NN cord-002530-ao7kenbx 18 10 is be VBZ cord-002530-ao7kenbx 18 11 a a DT cord-002530-ao7kenbx 18 12 significant significant JJ cord-002530-ao7kenbx 18 13 cause cause NN cord-002530-ao7kenbx 18 14 of of IN cord-002530-ao7kenbx 18 15 morbidity morbidity NN cord-002530-ao7kenbx 18 16 and and CC cord-002530-ao7kenbx 18 17 mortality mortality NN cord-002530-ao7kenbx 18 18 in in IN cord-002530-ao7kenbx 18 19 immunocompromised immunocompromised JJ cord-002530-ao7kenbx 18 20 populations population NNS cord-002530-ao7kenbx 18 21 , , , cord-002530-ao7kenbx 18 22 individuals individual NNS cord-002530-ao7kenbx 18 23 with with IN cord-002530-ao7kenbx 18 24 heart heart NN cord-002530-ao7kenbx 18 25 disease disease NN cord-002530-ao7kenbx 18 26 and and CC cord-002530-ao7kenbx 18 27 recipients recipient NNS cord-002530-ao7kenbx 18 28 of of IN cord-002530-ao7kenbx 18 29 solid solid JJ cord-002530-ao7kenbx 18 30 organ organ NN cord-002530-ao7kenbx 18 31 and and CC cord-002530-ao7kenbx 18 32 bone bone NN cord-002530-ao7kenbx 18 33 marrow marrow NN cord-002530-ao7kenbx 18 34 transplant transplant NN cord-002530-ao7kenbx 18 35 . . . cord-002530-ao7kenbx 19 1 HCMV HCMV NNP cord-002530-ao7kenbx 19 2 is be VBZ cord-002530-ao7kenbx 19 3 also also RB cord-002530-ao7kenbx 19 4 the the DT cord-002530-ao7kenbx 19 5 leading leading JJ cord-002530-ao7kenbx 19 6 cause cause NN cord-002530-ao7kenbx 19 7 of of IN cord-002530-ao7kenbx 19 8 infectious infectious JJ cord-002530-ao7kenbx 19 9 congenital congenital JJ cord-002530-ao7kenbx 19 10 birth birth NN cord-002530-ao7kenbx 19 11 defects defect NNS cord-002530-ao7kenbx 19 12 [ [ -LRB- cord-002530-ao7kenbx 19 13 1 1 CD cord-002530-ao7kenbx 19 14 ] ] -RRB- cord-002530-ao7kenbx 19 15 [ [ -LRB- cord-002530-ao7kenbx 19 16 2 2 CD cord-002530-ao7kenbx 19 17 ] ] -RRB- cord-002530-ao7kenbx 19 18 [ [ -LRB- cord-002530-ao7kenbx 19 19 3 3 CD cord-002530-ao7kenbx 19 20 ] ] -RRB- cord-002530-ao7kenbx 19 21 [ [ -LRB- cord-002530-ao7kenbx 19 22 4 4 CD cord-002530-ao7kenbx 19 23 ] ] -RRB- cord-002530-ao7kenbx 19 24 [ [ -LRB- cord-002530-ao7kenbx 19 25 5 5 CD cord-002530-ao7kenbx 19 26 ] ] -RRB- cord-002530-ao7kenbx 19 27 [ [ -LRB- cord-002530-ao7kenbx 19 28 6 6 CD cord-002530-ao7kenbx 19 29 ] ] -RRB- cord-002530-ao7kenbx 19 30 [ [ -LRB- cord-002530-ao7kenbx 19 31 7 7 CD cord-002530-ao7kenbx 19 32 ] ] -RRB- cord-002530-ao7kenbx 20 1 [ [ -LRB- cord-002530-ao7kenbx 20 2 8 8 CD cord-002530-ao7kenbx 20 3 ] ] -RRB- cord-002530-ao7kenbx 20 4 [ [ -LRB- cord-002530-ao7kenbx 20 5 9 9 CD cord-002530-ao7kenbx 20 6 ] ] -RRB- cord-002530-ao7kenbx 20 7 . . . cord-002530-ao7kenbx 21 1 During during IN cord-002530-ao7kenbx 21 2 infection infection NN cord-002530-ao7kenbx 21 3 , , , cord-002530-ao7kenbx 21 4 HCMV HCMV NNP cord-002530-ao7kenbx 21 5 initiates initiate VBZ cord-002530-ao7kenbx 21 6 a a DT cord-002530-ao7kenbx 21 7 programmed program VBN cord-002530-ao7kenbx 21 8 cascade cascade NN cord-002530-ao7kenbx 21 9 of of IN cord-002530-ao7kenbx 21 10 gene gene NN cord-002530-ao7kenbx 21 11 expression expression NN cord-002530-ao7kenbx 21 12 , , , cord-002530-ao7kenbx 21 13 resulting result VBG cord-002530-ao7kenbx 21 14 in in IN cord-002530-ao7kenbx 21 15 production production NN cord-002530-ao7kenbx 21 16 of of IN cord-002530-ao7kenbx 21 17 infectious infectious JJ cord-002530-ao7kenbx 21 18 virus virus NN cord-002530-ao7kenbx 21 19 . . . cord-002530-ao7kenbx 22 1 Two two CD cord-002530-ao7kenbx 22 2 of of IN cord-002530-ao7kenbx 22 3 the the DT cord-002530-ao7kenbx 22 4 first first JJ cord-002530-ao7kenbx 22 5 genes gene NNS cord-002530-ao7kenbx 22 6 to to TO cord-002530-ao7kenbx 22 7 be be VB cord-002530-ao7kenbx 22 8 expressed express VBN cord-002530-ao7kenbx 22 9 are be VBP cord-002530-ao7kenbx 22 10 the the DT cord-002530-ao7kenbx 22 11 major major JJ cord-002530-ao7kenbx 22 12 immediate immediate JJ cord-002530-ao7kenbx 22 13 early early JJ cord-002530-ao7kenbx 22 14 ( ( -LRB- cord-002530-ao7kenbx 22 15 MIE MIE NNP cord-002530-ao7kenbx 22 16 ) ) -RRB- cord-002530-ao7kenbx 22 17 genes gene NNS cord-002530-ao7kenbx 22 18 IE1 ie1 NN cord-002530-ao7kenbx 22 19 ( ( -LRB- cord-002530-ao7kenbx 22 20 IE72 IE72 NNP cord-002530-ao7kenbx 22 21 ) ) -RRB- cord-002530-ao7kenbx 22 22 and and CC cord-002530-ao7kenbx 22 23 IE2 ie2 NN cord-002530-ao7kenbx 22 24 ( ( -LRB- cord-002530-ao7kenbx 22 25 IE86 IE86 NNP cord-002530-ao7kenbx 22 26 ) ) -RRB- cord-002530-ao7kenbx 22 27 . . . cord-002530-ao7kenbx 23 1 The the DT cord-002530-ao7kenbx 23 2 MIE MIE NNP cord-002530-ao7kenbx 23 3 proteins protein NNS cord-002530-ao7kenbx 23 4 have have VBP cord-002530-ao7kenbx 23 5 multiple multiple JJ cord-002530-ao7kenbx 23 6 roles role NNS cord-002530-ao7kenbx 23 7 during during IN cord-002530-ao7kenbx 23 8 infection infection NN cord-002530-ao7kenbx 23 9 including include VBG cord-002530-ao7kenbx 23 10 transactivation transactivation NN cord-002530-ao7kenbx 23 11 of of IN cord-002530-ao7kenbx 23 12 viral viral JJ cord-002530-ao7kenbx 23 13 genes gene NNS cord-002530-ao7kenbx 23 14 , , , cord-002530-ao7kenbx 23 15 which which WDT cord-002530-ao7kenbx 23 16 drives drive VBZ cord-002530-ao7kenbx 23 17 replication replication NN cord-002530-ao7kenbx 23 18 and and CC cord-002530-ao7kenbx 23 19 virus virus NN cord-002530-ao7kenbx 23 20 production production NN cord-002530-ao7kenbx 23 21 [ [ -LRB- cord-002530-ao7kenbx 23 22 10 10 CD cord-002530-ao7kenbx 23 23 ] ] -RRB- cord-002530-ao7kenbx 24 1 [ [ -LRB- cord-002530-ao7kenbx 24 2 11 11 CD cord-002530-ao7kenbx 24 3 ] ] -RRB- cord-002530-ao7kenbx 24 4 [ [ -LRB- cord-002530-ao7kenbx 24 5 12 12 CD cord-002530-ao7kenbx 24 6 ] ] -RRB- cord-002530-ao7kenbx 24 7 . . . cord-002530-ao7kenbx 25 1 Because because IN cord-002530-ao7kenbx 25 2 of of IN cord-002530-ao7kenbx 25 3 this this DT cord-002530-ao7kenbx 25 4 , , , cord-002530-ao7kenbx 25 5 they -PRON- PRP cord-002530-ao7kenbx 25 6 are be VBP cord-002530-ao7kenbx 25 7 thought think VBN cord-002530-ao7kenbx 25 8 to to TO cord-002530-ao7kenbx 25 9 play play VB cord-002530-ao7kenbx 25 10 a a DT cord-002530-ao7kenbx 25 11 pivotal pivotal JJ cord-002530-ao7kenbx 25 12 role role NN cord-002530-ao7kenbx 25 13 in in IN cord-002530-ao7kenbx 25 14 controlling control VBG cord-002530-ao7kenbx 25 15 the the DT cord-002530-ao7kenbx 25 16 switch switch NN cord-002530-ao7kenbx 25 17 between between IN cord-002530-ao7kenbx 25 18 latent latent JJ cord-002530-ao7kenbx 25 19 and and CC cord-002530-ao7kenbx 25 20 productive productive JJ cord-002530-ao7kenbx 25 21 infection infection NN cord-002530-ao7kenbx 25 22 in in IN cord-002530-ao7kenbx 25 23 HCMV HCMV NNP cord-002530-ao7kenbx 25 24 [ [ -LRB- cord-002530-ao7kenbx 25 25 13 13 CD cord-002530-ao7kenbx 25 26 , , , cord-002530-ao7kenbx 25 27 14 14 CD cord-002530-ao7kenbx 25 28 ] ] -RRB- cord-002530-ao7kenbx 25 29 . . . cord-002530-ao7kenbx 26 1 While while IN cord-002530-ao7kenbx 26 2 IE1 IE1 NNP cord-002530-ao7kenbx 26 3 is be VBZ cord-002530-ao7kenbx 26 4 required require VBN cord-002530-ao7kenbx 26 5 for for IN cord-002530-ao7kenbx 26 6 efficient efficient JJ cord-002530-ao7kenbx 26 7 virus virus NN cord-002530-ao7kenbx 26 8 replication replication NN cord-002530-ao7kenbx 26 9 at at IN cord-002530-ao7kenbx 26 10 low low JJ cord-002530-ao7kenbx 26 11 multiplicity multiplicity NN cord-002530-ao7kenbx 26 12 of of IN cord-002530-ao7kenbx 26 13 infection infection NN cord-002530-ao7kenbx 26 14 [ [ -LRB- cord-002530-ao7kenbx 26 15 13 13 CD cord-002530-ao7kenbx 26 16 , , , cord-002530-ao7kenbx 26 17 14 14 CD cord-002530-ao7kenbx 26 18 ] ] -RRB- cord-002530-ao7kenbx 26 19 , , , cord-002530-ao7kenbx 26 20 IE2 ie2 JJ cord-002530-ao7kenbx 26 21 expression expression NN cord-002530-ao7kenbx 26 22 is be VBZ cord-002530-ao7kenbx 26 23 essential essential JJ cord-002530-ao7kenbx 26 24 , , , cord-002530-ao7kenbx 26 25 with with IN cord-002530-ao7kenbx 26 26 deletion deletion NN cord-002530-ao7kenbx 26 27 resulting result VBG cord-002530-ao7kenbx 26 28 in in IN cord-002530-ao7kenbx 26 29 non non JJ cord-002530-ao7kenbx 26 30 - - JJ cord-002530-ao7kenbx 26 31 viable viable JJ cord-002530-ao7kenbx 26 32 virus virus NN cord-002530-ao7kenbx 26 33 [ [ -LRB- cord-002530-ao7kenbx 26 34 15 15 CD cord-002530-ao7kenbx 26 35 ] ] -RRB- cord-002530-ao7kenbx 26 36 . . . cord-002530-ao7kenbx 27 1 IE1 ie1 NN cord-002530-ao7kenbx 27 2 and and CC cord-002530-ao7kenbx 27 3 IE2 IE2 NNP cord-002530-ao7kenbx 27 4 are be VBP cord-002530-ao7kenbx 27 5 generated generate VBN cord-002530-ao7kenbx 27 6 from from IN cord-002530-ao7kenbx 27 7 the the DT cord-002530-ao7kenbx 27 8 same same JJ cord-002530-ao7kenbx 27 9 primary primary JJ cord-002530-ao7kenbx 27 10 transcript transcript NN cord-002530-ao7kenbx 27 11 by by IN cord-002530-ao7kenbx 27 12 differential differential JJ cord-002530-ao7kenbx 27 13 splicing splicing NN cord-002530-ao7kenbx 27 14 and and CC cord-002530-ao7kenbx 27 15 alternative alternative JJ cord-002530-ao7kenbx 27 16 polyadenylation polyadenylation NN cord-002530-ao7kenbx 27 17 [ [ -LRB- cord-002530-ao7kenbx 27 18 10 10 CD cord-002530-ao7kenbx 27 19 , , , cord-002530-ao7kenbx 27 20 12 12 CD cord-002530-ao7kenbx 27 21 , , , cord-002530-ao7kenbx 27 22 16 16 CD cord-002530-ao7kenbx 27 23 ] ] -RRB- cord-002530-ao7kenbx 27 24 . . . cord-002530-ao7kenbx 28 1 They -PRON- PRP cord-002530-ao7kenbx 28 2 share share VBP cord-002530-ao7kenbx 28 3 the the DT cord-002530-ao7kenbx 28 4 first first JJ cord-002530-ao7kenbx 28 5 three three CD cord-002530-ao7kenbx 28 6 exons exon NNS cord-002530-ao7kenbx 28 7 , , , cord-002530-ao7kenbx 28 8 with with IN cord-002530-ao7kenbx 28 9 splicing splicing NN cord-002530-ao7kenbx 28 10 to to IN cord-002530-ao7kenbx 28 11 the the DT cord-002530-ao7kenbx 28 12 fourth fourth JJ cord-002530-ao7kenbx 28 13 or or CC cord-002530-ao7kenbx 28 14 fifth fifth JJ cord-002530-ao7kenbx 28 15 exon exon NN cord-002530-ao7kenbx 28 16 determining determine VBG cord-002530-ao7kenbx 28 17 expression expression NN cord-002530-ao7kenbx 28 18 of of IN cord-002530-ao7kenbx 28 19 IE1 ie1 NN cord-002530-ao7kenbx 28 20 or or CC cord-002530-ao7kenbx 28 21 IE2 IE2 NNP cord-002530-ao7kenbx 28 22 transcript transcript NN cord-002530-ao7kenbx 28 23 , , , cord-002530-ao7kenbx 28 24 respectively respectively RB cord-002530-ao7kenbx 28 25 ( ( -LRB- cord-002530-ao7kenbx 28 26 Fig Fig NNP cord-002530-ao7kenbx 28 27 1 1 CD cord-002530-ao7kenbx 28 28 ) ) -RRB- cord-002530-ao7kenbx 28 29 . . . cord-002530-ao7kenbx 29 1 Independent independent JJ cord-002530-ao7kenbx 29 2 polyadenylation polyadenylation NN cord-002530-ao7kenbx 29 3 signals signal NNS cord-002530-ao7kenbx 29 4 exist exist VBP cord-002530-ao7kenbx 29 5 downstream downstream RB cord-002530-ao7kenbx 29 6 of of IN cord-002530-ao7kenbx 29 7 both both DT cord-002530-ao7kenbx 29 8 exon exon NN cord-002530-ao7kenbx 29 9 four four CD cord-002530-ao7kenbx 29 10 and and CC cord-002530-ao7kenbx 29 11 exon exon VBD cord-002530-ao7kenbx 29 12 five five CD cord-002530-ao7kenbx 29 13 . . . cord-002530-ao7kenbx 30 1 Such such JJ cord-002530-ao7kenbx 30 2 genomic genomic JJ cord-002530-ao7kenbx 30 3 arrangements arrangement NNS cord-002530-ao7kenbx 30 4 , , , cord-002530-ao7kenbx 30 5 that that WDT cord-002530-ao7kenbx 30 6 require require VBP cord-002530-ao7kenbx 30 7 terminal terminal NN cord-002530-ao7kenbx 30 8 exon exon NN cord-002530-ao7kenbx 30 9 skipping skip VBG cord-002530-ao7kenbx 30 10 , , , cord-002530-ao7kenbx 30 11 are be VBP cord-002530-ao7kenbx 30 12 considered consider VBN cord-002530-ao7kenbx 30 13 relatively relatively RB cord-002530-ao7kenbx 30 14 unusual unusual JJ cord-002530-ao7kenbx 30 15 in in IN cord-002530-ao7kenbx 30 16 the the DT cord-002530-ao7kenbx 30 17 host host NN cord-002530-ao7kenbx 30 18 cell cell NN cord-002530-ao7kenbx 30 19 , , , cord-002530-ao7kenbx 30 20 with with IN cord-002530-ao7kenbx 30 21 specific specific JJ cord-002530-ao7kenbx 30 22 factors factor NNS cord-002530-ao7kenbx 30 23 and and CC cord-002530-ao7kenbx 30 24 mechanisms mechanism NNS cord-002530-ao7kenbx 30 25 involved involve VBN cord-002530-ao7kenbx 30 26 in in IN cord-002530-ao7kenbx 30 27 regulating regulate VBG cord-002530-ao7kenbx 30 28 the the DT cord-002530-ao7kenbx 30 29 process process NN cord-002530-ao7kenbx 30 30 not not RB cord-002530-ao7kenbx 30 31 fully fully RB cord-002530-ao7kenbx 30 32 understood understand VBN cord-002530-ao7kenbx 30 33 [ [ -LRB- cord-002530-ao7kenbx 30 34 17 17 CD cord-002530-ao7kenbx 30 35 ] ] -RRB- cord-002530-ao7kenbx 30 36 . . . cord-002530-ao7kenbx 31 1 Valosin Valosin NNP cord-002530-ao7kenbx 31 2 containing contain VBG cord-002530-ao7kenbx 31 3 protein protein NN cord-002530-ao7kenbx 31 4 ( ( -LRB- cord-002530-ao7kenbx 31 5 VCP VCP NNP cord-002530-ao7kenbx 31 6 ) ) -RRB- cord-002530-ao7kenbx 31 7 belongs belong VBZ cord-002530-ao7kenbx 31 8 to to IN cord-002530-ao7kenbx 31 9 the the DT cord-002530-ao7kenbx 31 10 hexameric hexameric JJ cord-002530-ao7kenbx 31 11 AAA AAA NNP cord-002530-ao7kenbx 31 12 ATPase ATPase NNP cord-002530-ao7kenbx 31 13 family family NN cord-002530-ao7kenbx 31 14 and and CC cord-002530-ao7kenbx 31 15 plays play VBZ cord-002530-ao7kenbx 31 16 a a DT cord-002530-ao7kenbx 31 17 pivotal pivotal JJ cord-002530-ao7kenbx 31 18 role role NN cord-002530-ao7kenbx 31 19 in in IN cord-002530-ao7kenbx 31 20 ubiquitin ubiquitin NN cord-002530-ao7kenbx 31 21 mediated mediate VBN cord-002530-ao7kenbx 31 22 signaling signal VBG cord-002530-ao7kenbx 31 23 through through IN cord-002530-ao7kenbx 31 24 remodeling remodel VBG cord-002530-ao7kenbx 31 25 target target NN cord-002530-ao7kenbx 31 26 proteins protein NNS cord-002530-ao7kenbx 31 27 , , , cord-002530-ao7kenbx 31 28 often often RB cord-002530-ao7kenbx 31 29 leading lead VBG cord-002530-ao7kenbx 31 30 to to IN cord-002530-ao7kenbx 31 31 proteosomal proteosomal FW cord-002530-ao7kenbx 31 32 degradation degradation NN cord-002530-ao7kenbx 31 33 [ [ -LRB- cord-002530-ao7kenbx 31 34 18 18 CD cord-002530-ao7kenbx 31 35 ] ] -RRB- cord-002530-ao7kenbx 31 36 . . . cord-002530-ao7kenbx 32 1 VCP VCP NNP cord-002530-ao7kenbx 32 2 contains contain VBZ cord-002530-ao7kenbx 32 3 two two CD cord-002530-ao7kenbx 32 4 ATPase ATPase NNP cord-002530-ao7kenbx 32 5 domains domain NNS cord-002530-ao7kenbx 32 6 , , , cord-002530-ao7kenbx 32 7 which which WDT cord-002530-ao7kenbx 32 8 hydrolyze hydrolyze VBP cord-002530-ao7kenbx 32 9 ATP ATP NNP cord-002530-ao7kenbx 32 10 to to TO cord-002530-ao7kenbx 32 11 generate generate VB cord-002530-ao7kenbx 32 12 the the DT cord-002530-ao7kenbx 32 13 energy energy NN cord-002530-ao7kenbx 32 14 required require VBN cord-002530-ao7kenbx 32 15 to to TO cord-002530-ao7kenbx 32 16 remodel remodel VB cord-002530-ao7kenbx 32 17 or or CC cord-002530-ao7kenbx 32 18 unfold unfold VB cord-002530-ao7kenbx 32 19 target target NN cord-002530-ao7kenbx 32 20 proteins protein NNS cord-002530-ao7kenbx 32 21 . . . cord-002530-ao7kenbx 33 1 Through through IN cord-002530-ao7kenbx 33 2 this this DT cord-002530-ao7kenbx 33 3 action action NN cord-002530-ao7kenbx 33 4 , , , cord-002530-ao7kenbx 33 5 VCP VCP NNP cord-002530-ao7kenbx 33 6 is be VBZ cord-002530-ao7kenbx 33 7 able able JJ cord-002530-ao7kenbx 33 8 to to TO cord-002530-ao7kenbx 33 9 segregate segregate VB cord-002530-ao7kenbx 33 10 target target NN cord-002530-ao7kenbx 33 11 proteins protein NNS cord-002530-ao7kenbx 33 12 from from IN cord-002530-ao7kenbx 33 13 associated associated JJ cord-002530-ao7kenbx 33 14 cellular cellular JJ cord-002530-ao7kenbx 33 15 membranes membrane NNS cord-002530-ao7kenbx 33 16 or or CC cord-002530-ao7kenbx 33 17 larger large JJR cord-002530-ao7kenbx 33 18 protein protein NN cord-002530-ao7kenbx 33 19 complexes complex NNS cord-002530-ao7kenbx 33 20 . . . cord-002530-ao7kenbx 34 1 Once once RB cord-002530-ao7kenbx 34 2 segregated segregate VBN cord-002530-ao7kenbx 34 3 , , , cord-002530-ao7kenbx 34 4 the the DT cord-002530-ao7kenbx 34 5 target target NN cord-002530-ao7kenbx 34 6 protein protein NN cord-002530-ao7kenbx 34 7 is be VBZ cord-002530-ao7kenbx 34 8 relocalised relocalise VBN cord-002530-ao7kenbx 34 9 or or CC cord-002530-ao7kenbx 34 10 degraded degrade VBN cord-002530-ao7kenbx 34 11 via via IN cord-002530-ao7kenbx 34 12 the the DT cord-002530-ao7kenbx 34 13 proteosomal proteosomal JJ cord-002530-ao7kenbx 34 14 complex complex NN cord-002530-ao7kenbx 34 15 . . . cord-002530-ao7kenbx 35 1 VCP VCP NNP cord-002530-ao7kenbx 35 2 can can MD cord-002530-ao7kenbx 35 3 also also RB cord-002530-ao7kenbx 35 4 affect affect VB cord-002530-ao7kenbx 35 5 which which WDT cord-002530-ao7kenbx 35 6 proteins protein NNS cord-002530-ao7kenbx 35 7 are be VBP cord-002530-ao7kenbx 35 8 modified modify VBN cord-002530-ao7kenbx 35 9 through through IN cord-002530-ao7kenbx 35 10 its -PRON- PRP$ cord-002530-ao7kenbx 35 11 interaction interaction NN cord-002530-ao7kenbx 35 12 with with IN cord-002530-ao7kenbx 35 13 multiple multiple JJ cord-002530-ao7kenbx 35 14 ubiquitin ubiquitin JJ cord-002530-ao7kenbx 35 15 regulatory regulatory JJ cord-002530-ao7kenbx 35 16 co co NNS cord-002530-ao7kenbx 35 17 - - NNS cord-002530-ao7kenbx 35 18 factors factor NNS cord-002530-ao7kenbx 35 19 , , , cord-002530-ao7kenbx 35 20 making make VBG cord-002530-ao7kenbx 35 21 VCP VCP NNP cord-002530-ao7kenbx 35 22 a a DT cord-002530-ao7kenbx 35 23 central central JJ cord-002530-ao7kenbx 35 24 signalling signal VBG cord-002530-ao7kenbx 35 25 hub hub NN cord-002530-ao7kenbx 35 26 for for IN cord-002530-ao7kenbx 35 27 ubiquitin ubiquitin NN cord-002530-ao7kenbx 35 28 mediated mediate VBN cord-002530-ao7kenbx 35 29 regulation regulation NN cord-002530-ao7kenbx 35 30 . . . cord-002530-ao7kenbx 36 1 In in IN cord-002530-ao7kenbx 36 2 addition addition NN cord-002530-ao7kenbx 36 3 to to IN cord-002530-ao7kenbx 36 4 ubiquitin ubiquitin NN cord-002530-ao7kenbx 36 5 , , , cord-002530-ao7kenbx 36 6 VCP VCP NNP cord-002530-ao7kenbx 36 7 has have VBZ cord-002530-ao7kenbx 36 8 been be VBN cord-002530-ao7kenbx 36 9 linked link VBN cord-002530-ao7kenbx 36 10 to to IN cord-002530-ao7kenbx 36 11 other other JJ cord-002530-ao7kenbx 36 12 post post JJ cord-002530-ao7kenbx 36 13 - - JJ cord-002530-ao7kenbx 36 14 translational translational JJ cord-002530-ao7kenbx 36 15 modifiers modifier NNS cord-002530-ao7kenbx 36 16 such such JJ cord-002530-ao7kenbx 36 17 as as IN cord-002530-ao7kenbx 36 18 SUMO SUMO NNP cord-002530-ao7kenbx 36 19 and and CC cord-002530-ao7kenbx 36 20 Nedd8 nedd8 JJ cord-002530-ao7kenbx 36 21 [ [ -LRB- cord-002530-ao7kenbx 36 22 19 19 CD cord-002530-ao7kenbx 36 23 , , , cord-002530-ao7kenbx 36 24 20 20 CD cord-002530-ao7kenbx 36 25 ] ] -RRB- cord-002530-ao7kenbx 36 26 . . . cord-002530-ao7kenbx 37 1 As as IN cord-002530-ao7kenbx 37 2 such such JJ cord-002530-ao7kenbx 37 3 it -PRON- PRP cord-002530-ao7kenbx 37 4 is be VBZ cord-002530-ao7kenbx 37 5 linked link VBN cord-002530-ao7kenbx 37 6 to to IN cord-002530-ao7kenbx 37 7 a a DT cord-002530-ao7kenbx 37 8 wide wide JJ cord-002530-ao7kenbx 37 9 range range NN cord-002530-ao7kenbx 37 10 of of IN cord-002530-ao7kenbx 37 11 biological biological JJ cord-002530-ao7kenbx 37 12 functions function NNS cord-002530-ao7kenbx 37 13 , , , cord-002530-ao7kenbx 37 14 including include VBG cord-002530-ao7kenbx 37 15 protein protein NN cord-002530-ao7kenbx 37 16 quality quality NN cord-002530-ao7kenbx 37 17 control control NN cord-002530-ao7kenbx 37 18 , , , cord-002530-ao7kenbx 37 19 autophagy autophagy NN cord-002530-ao7kenbx 37 20 , , , cord-002530-ao7kenbx 37 21 chromatin chromatin NN cord-002530-ao7kenbx 37 22 remodeling remodeling NN cord-002530-ao7kenbx 37 23 , , , cord-002530-ao7kenbx 37 24 DNA dna NN cord-002530-ao7kenbx 37 25 damage damage NN cord-002530-ao7kenbx 37 26 response response NN cord-002530-ao7kenbx 37 27 and and CC cord-002530-ao7kenbx 37 28 more more RBR cord-002530-ao7kenbx 37 29 recently recently RB cord-002530-ao7kenbx 37 30 RNA RNA NNP cord-002530-ao7kenbx 37 31 processing processing NN cord-002530-ao7kenbx 37 32 [ [ -LRB- cord-002530-ao7kenbx 37 33 21 21 CD cord-002530-ao7kenbx 37 34 ] ] -RRB- cord-002530-ao7kenbx 37 35 . . . cord-002530-ao7kenbx 38 1 Functionally functionally RB cord-002530-ao7kenbx 38 2 , , , cord-002530-ao7kenbx 38 3 VCP VCP NNP cord-002530-ao7kenbx 38 4 plays play VBZ cord-002530-ao7kenbx 38 5 a a DT cord-002530-ao7kenbx 38 6 central central JJ cord-002530-ao7kenbx 38 7 role role NN cord-002530-ao7kenbx 38 8 in in IN cord-002530-ao7kenbx 38 9 protein protein NN cord-002530-ao7kenbx 38 10 homeostasis homeostasis NN cord-002530-ao7kenbx 38 11 by by IN cord-002530-ao7kenbx 38 12 facilitating facilitate VBG cord-002530-ao7kenbx 38 13 proteosomal proteosomal JJ cord-002530-ao7kenbx 38 14 degradation degradation NN cord-002530-ao7kenbx 38 15 of of IN cord-002530-ao7kenbx 38 16 misfolded misfolded JJ cord-002530-ao7kenbx 38 17 or or CC cord-002530-ao7kenbx 38 18 damaged damage VBN cord-002530-ao7kenbx 38 19 proteins protein NNS cord-002530-ao7kenbx 38 20 as as IN cord-002530-ao7kenbx 38 21 part part NN cord-002530-ao7kenbx 38 22 of of IN cord-002530-ao7kenbx 38 23 the the DT cord-002530-ao7kenbx 38 24 endoplasmic endoplasmic NN cord-002530-ao7kenbx 38 25 reticulum reticulum NN cord-002530-ao7kenbx 38 26 associated associate VBD cord-002530-ao7kenbx 38 27 degradation degradation NN cord-002530-ao7kenbx 38 28 pathway pathway NN cord-002530-ao7kenbx 38 29 ( ( -LRB- cord-002530-ao7kenbx 38 30 ERAD ERAD NNP cord-002530-ao7kenbx 38 31 ) ) -RRB- cord-002530-ao7kenbx 38 32 . . . cord-002530-ao7kenbx 39 1 In in IN cord-002530-ao7kenbx 39 2 addition addition NN cord-002530-ao7kenbx 39 3 to to IN cord-002530-ao7kenbx 39 4 its -PRON- PRP$ cord-002530-ao7kenbx 39 5 role role NN cord-002530-ao7kenbx 39 6 in in IN cord-002530-ao7kenbx 39 7 protein protein NN cord-002530-ao7kenbx 39 8 degradation degradation NN cord-002530-ao7kenbx 39 9 , , , cord-002530-ao7kenbx 39 10 VCP VCP NNP cord-002530-ao7kenbx 39 11 has have VBZ cord-002530-ao7kenbx 39 12 been be VBN cord-002530-ao7kenbx 39 13 linked link VBN cord-002530-ao7kenbx 39 14 to to IN cord-002530-ao7kenbx 39 15 non non JJ cord-002530-ao7kenbx 39 16 - - JJ cord-002530-ao7kenbx 39 17 degradative degradative JJ cord-002530-ao7kenbx 39 18 functions function NNS cord-002530-ao7kenbx 39 19 involving involve VBG cord-002530-ao7kenbx 39 20 removal removal NN cord-002530-ao7kenbx 39 21 and and CC cord-002530-ao7kenbx 39 22 relocation relocation NN cord-002530-ao7kenbx 39 23 of of IN cord-002530-ao7kenbx 39 24 proteins protein NNS cord-002530-ao7kenbx 39 25 from from IN cord-002530-ao7kenbx 39 26 membranes membrane NNS cord-002530-ao7kenbx 39 27 and and CC cord-002530-ao7kenbx 39 28 protein protein NN cord-002530-ao7kenbx 39 29 complexes complex NNS cord-002530-ao7kenbx 39 30 . . . cord-002530-ao7kenbx 40 1 Examples example NNS cord-002530-ao7kenbx 40 2 include include VBP cord-002530-ao7kenbx 40 3 removal removal NN cord-002530-ao7kenbx 40 4 of of IN cord-002530-ao7kenbx 40 5 Aurora Aurora NNP cord-002530-ao7kenbx 40 6 B B NNP cord-002530-ao7kenbx 40 7 protein protein NN cord-002530-ao7kenbx 40 8 from from IN cord-002530-ao7kenbx 40 9 mitotic mitotic JJ cord-002530-ao7kenbx 40 10 chromosomes chromosome NNS cord-002530-ao7kenbx 40 11 , , , cord-002530-ao7kenbx 40 12 removal removal NN cord-002530-ao7kenbx 40 13 of of IN cord-002530-ao7kenbx 40 14 transcription transcription NN cord-002530-ao7kenbx 40 15 factors factor NNS cord-002530-ao7kenbx 40 16 from from IN cord-002530-ao7kenbx 40 17 chromatin chromatin NN cord-002530-ao7kenbx 40 18 and and CC cord-002530-ao7kenbx 40 19 disassembly disassembly NN cord-002530-ao7kenbx 40 20 of of IN cord-002530-ao7kenbx 40 21 RNP RNP NNP cord-002530-ao7kenbx 40 22 complexes complex NNS cord-002530-ao7kenbx 40 23 [ [ -LRB- cord-002530-ao7kenbx 40 24 22 22 CD cord-002530-ao7kenbx 40 25 , , , cord-002530-ao7kenbx 40 26 23 23 CD cord-002530-ao7kenbx 40 27 ] ] -RRB- cord-002530-ao7kenbx 40 28 . . . cord-002530-ao7kenbx 41 1 It -PRON- PRP cord-002530-ao7kenbx 41 2 has have VBZ cord-002530-ao7kenbx 41 3 also also RB cord-002530-ao7kenbx 41 4 been be VBN cord-002530-ao7kenbx 41 5 linked link VBN cord-002530-ao7kenbx 41 6 to to IN cord-002530-ao7kenbx 41 7 a a DT cord-002530-ao7kenbx 41 8 number number NN cord-002530-ao7kenbx 41 9 of of IN cord-002530-ao7kenbx 41 10 functional functional JJ cord-002530-ao7kenbx 41 11 roles role NNS cord-002530-ao7kenbx 41 12 in in IN cord-002530-ao7kenbx 41 13 virus virus NN cord-002530-ao7kenbx 41 14 replication replication NN cord-002530-ao7kenbx 41 15 including include VBG cord-002530-ao7kenbx 41 16 entry entry NN cord-002530-ao7kenbx 41 17 of of IN cord-002530-ao7kenbx 41 18 Sindbis Sindbis NNP cord-002530-ao7kenbx 41 19 virus virus NN cord-002530-ao7kenbx 41 20 and and CC cord-002530-ao7kenbx 41 21 replication replication NN cord-002530-ao7kenbx 41 22 of of IN cord-002530-ao7kenbx 41 23 poliovirus poliovirus NN cord-002530-ao7kenbx 41 24 [ [ -LRB- cord-002530-ao7kenbx 41 25 24 24 CD cord-002530-ao7kenbx 41 26 ] ] -RRB- cord-002530-ao7kenbx 41 27 [ [ -LRB- cord-002530-ao7kenbx 41 28 25 25 CD cord-002530-ao7kenbx 41 29 ] ] -RRB- cord-002530-ao7kenbx 41 30 [ [ -LRB- cord-002530-ao7kenbx 41 31 26 26 CD cord-002530-ao7kenbx 41 32 ] ] -RRB- cord-002530-ao7kenbx 41 33 . . . cord-002530-ao7kenbx 42 1 While while IN cord-002530-ao7kenbx 42 2 VCP VCP NNP cord-002530-ao7kenbx 42 3 plays play VBZ cord-002530-ao7kenbx 42 4 a a DT cord-002530-ao7kenbx 42 5 role role NN cord-002530-ao7kenbx 42 6 in in IN cord-002530-ao7kenbx 42 7 US11-specific us11-specific JJ cord-002530-ao7kenbx 42 8 degradation degradation NN cord-002530-ao7kenbx 42 9 of of IN cord-002530-ao7kenbx 42 10 MHC MHC NNP cord-002530-ao7kenbx 42 11 class class NN cord-002530-ao7kenbx 42 12 I -PRON- PRP cord-002530-ao7kenbx 42 13 protein protein VBP cord-002530-ao7kenbx 42 14 during during IN cord-002530-ao7kenbx 42 15 HCMV HCMV NNP cord-002530-ao7kenbx 42 16 infection infection NN cord-002530-ao7kenbx 42 17 [ [ -LRB- cord-002530-ao7kenbx 42 18 27 27 CD cord-002530-ao7kenbx 42 19 ] ] -RRB- cord-002530-ao7kenbx 42 20 a a DT cord-002530-ao7kenbx 42 21 direct direct JJ cord-002530-ao7kenbx 42 22 role role NN cord-002530-ao7kenbx 42 23 for for IN cord-002530-ao7kenbx 42 24 VCP VCP NNP cord-002530-ao7kenbx 42 25 in in IN cord-002530-ao7kenbx 42 26 the the DT cord-002530-ao7kenbx 42 27 replication replication NN cord-002530-ao7kenbx 42 28 of of IN cord-002530-ao7kenbx 42 29 HCMV HCMV NNP cord-002530-ao7kenbx 42 30 has have VBZ cord-002530-ao7kenbx 42 31 not not RB cord-002530-ao7kenbx 42 32 previously previously RB cord-002530-ao7kenbx 42 33 been be VBN cord-002530-ao7kenbx 42 34 reported report VBN cord-002530-ao7kenbx 42 35 . . . cord-002530-ao7kenbx 43 1 Using use VBG cord-002530-ao7kenbx 43 2 a a DT cord-002530-ao7kenbx 43 3 focused focused JJ cord-002530-ao7kenbx 43 4 siRNA siRNA NNP cord-002530-ao7kenbx 43 5 screen screen NN cord-002530-ao7kenbx 43 6 , , , cord-002530-ao7kenbx 43 7 we -PRON- PRP cord-002530-ao7kenbx 43 8 identified identify VBD cord-002530-ao7kenbx 43 9 VCP VCP NNP cord-002530-ao7kenbx 43 10 as as IN cord-002530-ao7kenbx 43 11 an an DT cord-002530-ao7kenbx 43 12 essential essential JJ cord-002530-ao7kenbx 43 13 factor factor NN cord-002530-ao7kenbx 43 14 for for IN cord-002530-ao7kenbx 43 15 HCMV HCMV NNP cord-002530-ao7kenbx 43 16 replication replication NN cord-002530-ao7kenbx 43 17 . . . cord-002530-ao7kenbx 44 1 We -PRON- PRP cord-002530-ao7kenbx 44 2 show show VBP cord-002530-ao7kenbx 44 3 that that IN cord-002530-ao7kenbx 44 4 VCP VCP NNP cord-002530-ao7kenbx 44 5 is be VBZ cord-002530-ao7kenbx 44 6 essential essential JJ cord-002530-ao7kenbx 44 7 for for IN cord-002530-ao7kenbx 44 8 the the DT cord-002530-ao7kenbx 44 9 onset onset NN cord-002530-ao7kenbx 44 10 of of IN cord-002530-ao7kenbx 44 11 virus virus NN cord-002530-ao7kenbx 44 12 replication replication NN cord-002530-ao7kenbx 44 13 and and CC cord-002530-ao7kenbx 44 14 knockdown knockdown NN cord-002530-ao7kenbx 44 15 of of IN cord-002530-ao7kenbx 44 16 VCP VCP NNP cord-002530-ao7kenbx 44 17 results result NNS cord-002530-ao7kenbx 44 18 in in IN cord-002530-ao7kenbx 44 19 changes change NNS cord-002530-ao7kenbx 44 20 in in IN cord-002530-ao7kenbx 44 21 alternative alternative JJ cord-002530-ao7kenbx 44 22 splicing splicing NN cord-002530-ao7kenbx 44 23 of of IN cord-002530-ao7kenbx 44 24 the the DT cord-002530-ao7kenbx 44 25 MIE MIE NNP cord-002530-ao7kenbx 44 26 transcripts transcript NNS cord-002530-ao7kenbx 44 27 , , , cord-002530-ao7kenbx 44 28 loss loss NN cord-002530-ao7kenbx 44 29 of of IN cord-002530-ao7kenbx 44 30 IE2 ie2 JJ cord-002530-ao7kenbx 44 31 expression expression NN cord-002530-ao7kenbx 44 32 and and CC cord-002530-ao7kenbx 44 33 ultimately ultimately RB cord-002530-ao7kenbx 44 34 failure failure NN cord-002530-ao7kenbx 44 35 in in IN cord-002530-ao7kenbx 44 36 virus virus NN cord-002530-ao7kenbx 44 37 replication replication NN cord-002530-ao7kenbx 44 38 . . . cord-002530-ao7kenbx 45 1 Previously previously RB cord-002530-ao7kenbx 45 2 , , , cord-002530-ao7kenbx 45 3 we -PRON- PRP cord-002530-ao7kenbx 45 4 identified identify VBD cord-002530-ao7kenbx 45 5 the the DT cord-002530-ao7kenbx 45 6 host host NN cord-002530-ao7kenbx 45 7 gene gene NN cord-002530-ao7kenbx 45 8 ATP6V0C atp6v0c NN cord-002530-ao7kenbx 45 9 as as IN cord-002530-ao7kenbx 45 10 a a DT cord-002530-ao7kenbx 45 11 critical critical JJ cord-002530-ao7kenbx 45 12 factor factor NN cord-002530-ao7kenbx 45 13 in in IN cord-002530-ao7kenbx 45 14 HCMV HCMV NNP cord-002530-ao7kenbx 45 15 virus virus NN cord-002530-ao7kenbx 45 16 production production NN cord-002530-ao7kenbx 45 17 [ [ -LRB- cord-002530-ao7kenbx 45 18 28 28 CD cord-002530-ao7kenbx 45 19 ] ] -RRB- cord-002530-ao7kenbx 45 20 . . . cord-002530-ao7kenbx 46 1 ATP6V0C atp6v0c LS cord-002530-ao7kenbx 46 2 is be VBZ cord-002530-ao7kenbx 46 3 a a DT cord-002530-ao7kenbx 46 4 component component NN cord-002530-ao7kenbx 46 5 of of IN cord-002530-ao7kenbx 46 6 the the DT cord-002530-ao7kenbx 46 7 vacuolar vacuolar NNP cord-002530-ao7kenbx 46 8 ATPase ATPase NNP cord-002530-ao7kenbx 46 9 , , , cord-002530-ao7kenbx 46 10 and and CC cord-002530-ao7kenbx 46 11 among among IN cord-002530-ao7kenbx 46 12 other other JJ cord-002530-ao7kenbx 46 13 functions function NNS cord-002530-ao7kenbx 46 14 , , , cord-002530-ao7kenbx 46 15 is be VBZ cord-002530-ao7kenbx 46 16 involved involve VBN cord-002530-ao7kenbx 46 17 in in IN cord-002530-ao7kenbx 46 18 membrane membrane NN cord-002530-ao7kenbx 46 19 organization organization NN cord-002530-ao7kenbx 46 20 [ [ -LRB- cord-002530-ao7kenbx 46 21 29 29 CD cord-002530-ao7kenbx 46 22 ] ] -RRB- cord-002530-ao7kenbx 46 23 . . . cord-002530-ao7kenbx 47 1 To to TO cord-002530-ao7kenbx 47 2 identify identify VB cord-002530-ao7kenbx 47 3 additional additional JJ cord-002530-ao7kenbx 47 4 host host NN cord-002530-ao7kenbx 47 5 membrane membrane NN cord-002530-ao7kenbx 47 6 organization organization NN cord-002530-ao7kenbx 47 7 factors factor NNS cord-002530-ao7kenbx 47 8 involved involve VBN cord-002530-ao7kenbx 47 9 in in IN cord-002530-ao7kenbx 47 10 HCMV HCMV NNP cord-002530-ao7kenbx 47 11 replication replication NN cord-002530-ao7kenbx 47 12 we -PRON- PRP cord-002530-ao7kenbx 47 13 performed perform VBD cord-002530-ao7kenbx 47 14 a a DT cord-002530-ao7kenbx 47 15 focused focused JJ cord-002530-ao7kenbx 47 16 siRNA siRNA NNP cord-002530-ao7kenbx 47 17 screen screen NN cord-002530-ao7kenbx 47 18 against against IN cord-002530-ao7kenbx 47 19 160 160 CD cord-002530-ao7kenbx 47 20 host host NN cord-002530-ao7kenbx 47 21 genes gene NNS cord-002530-ao7kenbx 47 22 involved involve VBN cord-002530-ao7kenbx 47 23 in in IN cord-002530-ao7kenbx 47 24 membrane membrane NN cord-002530-ao7kenbx 47 25 organization organization NN cord-002530-ao7kenbx 47 26 using use VBG cord-002530-ao7kenbx 47 27 pools pool NNS cord-002530-ao7kenbx 47 28 of of IN cord-002530-ao7kenbx 47 29 four four CD cord-002530-ao7kenbx 47 30 siRNAs sirna NNS cord-002530-ao7kenbx 47 31 against against IN cord-002530-ao7kenbx 47 32 each each DT cord-002530-ao7kenbx 47 33 target target NN cord-002530-ao7kenbx 47 34 . . . cord-002530-ao7kenbx 48 1 Primary primary JJ cord-002530-ao7kenbx 48 2 human human JJ cord-002530-ao7kenbx 48 3 fibroblast fibroblast NN cord-002530-ao7kenbx 48 4 cells cell NNS cord-002530-ao7kenbx 48 5 were be VBD cord-002530-ao7kenbx 48 6 double double RB cord-002530-ao7kenbx 48 7 transfected transfecte VBN cord-002530-ao7kenbx 48 8 with with IN cord-002530-ao7kenbx 48 9 each each DT cord-002530-ao7kenbx 48 10 siRNA siRNA NNP cord-002530-ao7kenbx 48 11 pool pool NN cord-002530-ao7kenbx 48 12 in in IN cord-002530-ao7kenbx 48 13 96 96 CD cord-002530-ao7kenbx 48 14 well well JJ cord-002530-ao7kenbx 48 15 format format NN cord-002530-ao7kenbx 48 16 . . . cord-002530-ao7kenbx 49 1 Two two CD cord-002530-ao7kenbx 49 2 days day NNS cord-002530-ao7kenbx 49 3 post post NN cord-002530-ao7kenbx 49 4 - - NN cord-002530-ao7kenbx 49 5 transfection transfection JJ cord-002530-ao7kenbx 49 6 , , , cord-002530-ao7kenbx 49 7 the the DT cord-002530-ao7kenbx 49 8 cells cell NNS cord-002530-ao7kenbx 49 9 were be VBD cord-002530-ao7kenbx 49 10 infected infect VBN cord-002530-ao7kenbx 49 11 with with IN cord-002530-ao7kenbx 49 12 a a DT cord-002530-ao7kenbx 49 13 low low JJ cord-002530-ao7kenbx 49 14 passage passage NN cord-002530-ao7kenbx 49 15 HCMV HCMV NNP cord-002530-ao7kenbx 49 16 strain strain NN cord-002530-ao7kenbx 49 17 , , , cord-002530-ao7kenbx 49 18 TB40E tb40e NN cord-002530-ao7kenbx 49 19 , , , cord-002530-ao7kenbx 49 20 expressing express VBG cord-002530-ao7kenbx 49 21 GFP GFP NNP cord-002530-ao7kenbx 49 22 from from IN cord-002530-ao7kenbx 49 23 an an DT cord-002530-ao7kenbx 49 24 SV40 SV40 NNP cord-002530-ao7kenbx 49 25 promoter promoter NN cord-002530-ao7kenbx 49 26 . . . cord-002530-ao7kenbx 50 1 GFP GFP NNP cord-002530-ao7kenbx 50 2 levels level NNS cord-002530-ao7kenbx 50 3 were be VBD cord-002530-ao7kenbx 50 4 monitored monitor VBN cord-002530-ao7kenbx 50 5 over over IN cord-002530-ao7kenbx 50 6 a a DT cord-002530-ao7kenbx 50 7 period period NN cord-002530-ao7kenbx 50 8 of of IN cord-002530-ao7kenbx 50 9 seven seven CD cord-002530-ao7kenbx 50 10 days day NNS cord-002530-ao7kenbx 50 11 by by IN cord-002530-ao7kenbx 50 12 fluorometry fluorometry NN cord-002530-ao7kenbx 50 13 to to TO cord-002530-ao7kenbx 50 14 determine determine VB cord-002530-ao7kenbx 50 15 virus virus NN cord-002530-ao7kenbx 50 16 infection infection NN cord-002530-ao7kenbx 50 17 and and CC cord-002530-ao7kenbx 50 18 replication replication NN cord-002530-ao7kenbx 50 19 levels level NNS cord-002530-ao7kenbx 50 20 ( ( -LRB- cord-002530-ao7kenbx 50 21 S1 S1 NNP cord-002530-ao7kenbx 50 22 Table Table NNP cord-002530-ao7kenbx 50 23 ) ) -RRB- cord-002530-ao7kenbx 50 24 . . . cord-002530-ao7kenbx 51 1 Analysis analysis NN cord-002530-ao7kenbx 51 2 of of IN cord-002530-ao7kenbx 51 3 the the DT cord-002530-ao7kenbx 51 4 screen screen NN cord-002530-ao7kenbx 51 5 indicated indicate VBD cord-002530-ao7kenbx 51 6 both both CC cord-002530-ao7kenbx 51 7 increased increase VBD cord-002530-ao7kenbx 51 8 and and CC cord-002530-ao7kenbx 51 9 decreased decrease VBD cord-002530-ao7kenbx 51 10 virus virus NN cord-002530-ao7kenbx 51 11 replication replication NN cord-002530-ao7kenbx 51 12 ranging range VBG cord-002530-ao7kenbx 51 13 from from IN cord-002530-ao7kenbx 51 14 88 88 CD cord-002530-ao7kenbx 51 15 % % NN cord-002530-ao7kenbx 51 16 reduction reduction NN cord-002530-ao7kenbx 51 17 in in IN cord-002530-ao7kenbx 51 18 GFP GFP NNP cord-002530-ao7kenbx 51 19 levels level NNS cord-002530-ao7kenbx 51 20 to to IN cord-002530-ao7kenbx 51 21 a a DT cord-002530-ao7kenbx 51 22 84 84 CD cord-002530-ao7kenbx 51 23 % % NN cord-002530-ao7kenbx 51 24 increase increase NN cord-002530-ao7kenbx 51 25 ( ( -LRB- cord-002530-ao7kenbx 51 26 Fig Fig NNP cord-002530-ao7kenbx 51 27 2A 2a CD cord-002530-ao7kenbx 51 28 ) ) -RRB- cord-002530-ao7kenbx 51 29 . . . cord-002530-ao7kenbx 52 1 Z z NN cord-002530-ao7kenbx 52 2 - - HYPH cord-002530-ao7kenbx 52 3 score score NN cord-002530-ao7kenbx 52 4 analysis analysis NN cord-002530-ao7kenbx 52 5 based base VBN cord-002530-ao7kenbx 52 6 on on IN cord-002530-ao7kenbx 52 7 three three CD cord-002530-ao7kenbx 52 8 biological biological JJ cord-002530-ao7kenbx 52 9 repeats repeat NNS cord-002530-ao7kenbx 52 10 of of IN cord-002530-ao7kenbx 52 11 the the DT cord-002530-ao7kenbx 52 12 siRNA siRNA NNP cord-002530-ao7kenbx 52 13 screen screen NN cord-002530-ao7kenbx 52 14 identified identify VBD cord-002530-ao7kenbx 52 15 five five CD cord-002530-ao7kenbx 52 16 clear clear JJ cord-002530-ao7kenbx 52 17 outliers outlier NNS cord-002530-ao7kenbx 52 18 that that WDT cord-002530-ao7kenbx 52 19 resulted result VBD cord-002530-ao7kenbx 52 20 in in IN cord-002530-ao7kenbx 52 21 reproducible reproducible JJ cord-002530-ao7kenbx 52 22 reductions reduction NNS cord-002530-ao7kenbx 52 23 in in IN cord-002530-ao7kenbx 52 24 virus virus NN cord-002530-ao7kenbx 52 25 replication replication NN cord-002530-ao7kenbx 52 26 , , , cord-002530-ao7kenbx 52 27 as as IN cord-002530-ao7kenbx 52 28 measured measure VBN cord-002530-ao7kenbx 52 29 by by IN cord-002530-ao7kenbx 52 30 GFP GFP NNP cord-002530-ao7kenbx 52 31 fluorescence fluorescence NN cord-002530-ao7kenbx 52 32 intensity intensity NN cord-002530-ao7kenbx 52 33 ( ( -LRB- cord-002530-ao7kenbx 52 34 Fig Fig NNP cord-002530-ao7kenbx 52 35 2B 2b CD cord-002530-ao7kenbx 52 36 ) ) -RRB- cord-002530-ao7kenbx 52 37 . . . cord-002530-ao7kenbx 53 1 Of of IN cord-002530-ao7kenbx 53 2 these these DT cord-002530-ao7kenbx 53 3 , , , cord-002530-ao7kenbx 53 4 knockdown knockdown NN cord-002530-ao7kenbx 53 5 of of IN cord-002530-ao7kenbx 53 6 VCP VCP NNP cord-002530-ao7kenbx 53 7 resulted result VBD cord-002530-ao7kenbx 53 8 in in IN cord-002530-ao7kenbx 53 9 the the DT cord-002530-ao7kenbx 53 10 largest large JJS cord-002530-ao7kenbx 53 11 negative negative JJ cord-002530-ao7kenbx 53 12 Z z NN cord-002530-ao7kenbx 53 13 - - HYPH cord-002530-ao7kenbx 53 14 score score NN cord-002530-ao7kenbx 53 15 . . . cord-002530-ao7kenbx 54 1 To to TO cord-002530-ao7kenbx 54 2 validate validate VB cord-002530-ao7kenbx 54 3 that that IN cord-002530-ao7kenbx 54 4 the the DT cord-002530-ao7kenbx 54 5 observed observed JJ cord-002530-ao7kenbx 54 6 phenotype phenotype NN cord-002530-ao7kenbx 54 7 was be VBD cord-002530-ao7kenbx 54 8 due due JJ cord-002530-ao7kenbx 54 9 to to IN cord-002530-ao7kenbx 54 10 knockdown knockdown NN cord-002530-ao7kenbx 54 11 of of IN cord-002530-ao7kenbx 54 12 VCP VCP NNP cord-002530-ao7kenbx 54 13 , , , cord-002530-ao7kenbx 54 14 rather rather RB cord-002530-ao7kenbx 54 15 than than IN cord-002530-ao7kenbx 54 16 potential potential JJ cord-002530-ao7kenbx 54 17 off off IN cord-002530-ao7kenbx 54 18 - - HYPH cord-002530-ao7kenbx 54 19 target target NN cord-002530-ao7kenbx 54 20 effects effect NNS cord-002530-ao7kenbx 54 21 , , , cord-002530-ao7kenbx 54 22 the the DT cord-002530-ao7kenbx 54 23 original original JJ cord-002530-ao7kenbx 54 24 siRNA siRNA NNP cord-002530-ao7kenbx 54 25 pool pool NN cord-002530-ao7kenbx 54 26 was be VBD cord-002530-ao7kenbx 54 27 deconvoluted deconvolute VBN cord-002530-ao7kenbx 54 28 to to TO cord-002530-ao7kenbx 54 29 test test VB cord-002530-ao7kenbx 54 30 the the DT cord-002530-ao7kenbx 54 31 four four CD cord-002530-ao7kenbx 54 32 individual individual JJ cord-002530-ao7kenbx 54 33 siRNAs siRNAs NNP cord-002530-ao7kenbx 54 34 against against IN cord-002530-ao7kenbx 54 35 VCP VCP NNP cord-002530-ao7kenbx 54 36 . . . cord-002530-ao7kenbx 55 1 All all DT cord-002530-ao7kenbx 55 2 four four CD cord-002530-ao7kenbx 55 3 siRNAs sirna NNS cord-002530-ao7kenbx 55 4 resulted result VBD cord-002530-ao7kenbx 55 5 in in IN cord-002530-ao7kenbx 55 6 reduced reduce VBN cord-002530-ao7kenbx 55 7 VCP vcp NN cord-002530-ao7kenbx 55 8 expression expression NN cord-002530-ao7kenbx 55 9 and and CC cord-002530-ao7kenbx 55 10 reduced reduce VBN cord-002530-ao7kenbx 55 11 HCMV HCMV NNP cord-002530-ao7kenbx 55 12 replication replication NN cord-002530-ao7kenbx 55 13 based base VBN cord-002530-ao7kenbx 55 14 on on IN cord-002530-ao7kenbx 55 15 GFP GFP NNP cord-002530-ao7kenbx 55 16 fluorescence fluorescence NN cord-002530-ao7kenbx 55 17 ( ( -LRB- cord-002530-ao7kenbx 55 18 Fig Fig NNP cord-002530-ao7kenbx 55 19 2C 2c NN cord-002530-ao7kenbx 55 20 ) ) -RRB- cord-002530-ao7kenbx 55 21 . . . cord-002530-ao7kenbx 56 1 The the DT cord-002530-ao7kenbx 56 2 third third JJ cord-002530-ao7kenbx 56 3 siRNA siRNA NNP cord-002530-ao7kenbx 56 4 of of IN cord-002530-ao7kenbx 56 5 the the DT cord-002530-ao7kenbx 56 6 pool pool NN cord-002530-ao7kenbx 56 7 generated generate VBD cord-002530-ao7kenbx 56 8 less less RBR cord-002530-ao7kenbx 56 9 efficient efficient JJ cord-002530-ao7kenbx 56 10 VCP vcp NN cord-002530-ao7kenbx 56 11 knockdown knockdown NN cord-002530-ao7kenbx 56 12 , , , cord-002530-ao7kenbx 56 13 and and CC cord-002530-ao7kenbx 56 14 corresponded correspond VBD cord-002530-ao7kenbx 56 15 with with IN cord-002530-ao7kenbx 56 16 less less JJR cord-002530-ao7kenbx 56 17 inhibition inhibition NN cord-002530-ao7kenbx 56 18 of of IN cord-002530-ao7kenbx 56 19 HCMV HCMV NNP cord-002530-ao7kenbx 56 20 in in IN cord-002530-ao7kenbx 56 21 the the DT cord-002530-ao7kenbx 56 22 siRNA siRNA NNP cord-002530-ao7kenbx 56 23 assay assay NN cord-002530-ao7kenbx 56 24 , , , cord-002530-ao7kenbx 56 25 providing provide VBG cord-002530-ao7kenbx 56 26 additional additional JJ cord-002530-ao7kenbx 56 27 evidence evidence NN cord-002530-ao7kenbx 56 28 that that IN cord-002530-ao7kenbx 56 29 knockdown knockdown NN cord-002530-ao7kenbx 56 30 of of IN cord-002530-ao7kenbx 56 31 VCP VCP NNP cord-002530-ao7kenbx 56 32 results result NNS cord-002530-ao7kenbx 56 33 in in IN cord-002530-ao7kenbx 56 34 a a DT cord-002530-ao7kenbx 56 35 direct direct JJ cord-002530-ao7kenbx 56 36 reduction reduction NN cord-002530-ao7kenbx 56 37 in in IN cord-002530-ao7kenbx 56 38 virus virus NN cord-002530-ao7kenbx 56 39 replication replication NN cord-002530-ao7kenbx 56 40 . . . cord-002530-ao7kenbx 57 1 These these DT cord-002530-ao7kenbx 57 2 results result NNS cord-002530-ao7kenbx 57 3 indicate indicate VBP cord-002530-ao7kenbx 57 4 that that IN cord-002530-ao7kenbx 57 5 the the DT cord-002530-ao7kenbx 57 6 initial initial JJ cord-002530-ao7kenbx 57 7 observed observed JJ cord-002530-ao7kenbx 57 8 phenotype phenotype NN cord-002530-ao7kenbx 57 9 is be VBZ cord-002530-ao7kenbx 57 10 due due JJ cord-002530-ao7kenbx 57 11 to to IN cord-002530-ao7kenbx 57 12 specific specific JJ cord-002530-ao7kenbx 57 13 knockdown knockdown NN cord-002530-ao7kenbx 57 14 of of IN cord-002530-ao7kenbx 57 15 VCP VCP NNP cord-002530-ao7kenbx 57 16 rather rather RB cord-002530-ao7kenbx 57 17 than than IN cord-002530-ao7kenbx 57 18 off off IN cord-002530-ao7kenbx 57 19 - - HYPH cord-002530-ao7kenbx 57 20 target target NN cord-002530-ao7kenbx 57 21 artefactual artefactual JJ cord-002530-ao7kenbx 57 22 effects effect NNS cord-002530-ao7kenbx 57 23 of of IN cord-002530-ao7kenbx 57 24 the the DT cord-002530-ao7kenbx 57 25 siRNAs siRNAs NNP cord-002530-ao7kenbx 57 26 . . . cord-002530-ao7kenbx 58 1 Although although IN cord-002530-ao7kenbx 58 2 GFP GFP NNP cord-002530-ao7kenbx 58 3 expression expression NN cord-002530-ao7kenbx 58 4 serves serve VBZ cord-002530-ao7kenbx 58 5 as as IN cord-002530-ao7kenbx 58 6 an an DT cord-002530-ao7kenbx 58 7 effective effective JJ cord-002530-ao7kenbx 58 8 read read NN cord-002530-ao7kenbx 58 9 - - HYPH cord-002530-ao7kenbx 58 10 out out NN cord-002530-ao7kenbx 58 11 for for IN cord-002530-ao7kenbx 58 12 virus virus NN cord-002530-ao7kenbx 58 13 replication replication NN cord-002530-ao7kenbx 58 14 , , , cord-002530-ao7kenbx 58 15 loss loss NN cord-002530-ao7kenbx 58 16 of of IN cord-002530-ao7kenbx 58 17 GFP GFP NNP cord-002530-ao7kenbx 58 18 signal signal NN cord-002530-ao7kenbx 58 19 may may MD cord-002530-ao7kenbx 58 20 not not RB cord-002530-ao7kenbx 58 21 necessarily necessarily RB cord-002530-ao7kenbx 58 22 reflect reflect VB cord-002530-ao7kenbx 58 23 reduced reduce VBN cord-002530-ao7kenbx 58 24 virus virus NN cord-002530-ao7kenbx 58 25 production production NN cord-002530-ao7kenbx 58 26 . . . cord-002530-ao7kenbx 59 1 To to TO cord-002530-ao7kenbx 59 2 determine determine VB cord-002530-ao7kenbx 59 3 the the DT cord-002530-ao7kenbx 59 4 direct direct JJ cord-002530-ao7kenbx 59 5 effect effect NN cord-002530-ao7kenbx 59 6 of of IN cord-002530-ao7kenbx 59 7 VCP VCP NNP cord-002530-ao7kenbx 59 8 knockdown knockdown NN cord-002530-ao7kenbx 59 9 on on IN cord-002530-ao7kenbx 59 10 HCMV HCMV NNP cord-002530-ao7kenbx 59 11 virus virus NN cord-002530-ao7kenbx 59 12 production production NN cord-002530-ao7kenbx 59 13 , , , cord-002530-ao7kenbx 59 14 one one CD cord-002530-ao7kenbx 59 15 - - HYPH cord-002530-ao7kenbx 59 16 step step NN cord-002530-ao7kenbx 59 17 growth growth NN cord-002530-ao7kenbx 59 18 curves curve NNS cord-002530-ao7kenbx 59 19 were be VBD cord-002530-ao7kenbx 59 20 generated generate VBN cord-002530-ao7kenbx 59 21 . . . cord-002530-ao7kenbx 60 1 Primary primary JJ cord-002530-ao7kenbx 60 2 human human JJ cord-002530-ao7kenbx 60 3 fibroblast fibroblast NN cord-002530-ao7kenbx 60 4 cells cell NNS cord-002530-ao7kenbx 60 5 were be VBD cord-002530-ao7kenbx 60 6 transfected transfecte VBN cord-002530-ao7kenbx 60 7 with with IN cord-002530-ao7kenbx 60 8 siRNA siRNA NNP cord-002530-ao7kenbx 60 9 pools pool NNS cord-002530-ao7kenbx 60 10 targeting target VBG cord-002530-ao7kenbx 60 11 VCP VCP NNP cord-002530-ao7kenbx 60 12 or or CC cord-002530-ao7kenbx 60 13 a a DT cord-002530-ao7kenbx 60 14 negative negative JJ cord-002530-ao7kenbx 60 15 control control NN cord-002530-ao7kenbx 60 16 non non JJ cord-002530-ao7kenbx 60 17 - - JJ cord-002530-ao7kenbx 60 18 targeting targeting JJ cord-002530-ao7kenbx 60 19 siRNA siRNA NNP cord-002530-ao7kenbx 60 20 . . . cord-002530-ao7kenbx 61 1 Two two CD cord-002530-ao7kenbx 61 2 days day NNS cord-002530-ao7kenbx 61 3 post post VBP cord-002530-ao7kenbx 61 4 transfection transfection NN cord-002530-ao7kenbx 61 5 cells cell NNS cord-002530-ao7kenbx 61 6 were be VBD cord-002530-ao7kenbx 61 7 infected infect VBN cord-002530-ao7kenbx 61 8 at at IN cord-002530-ao7kenbx 61 9 a a DT cord-002530-ao7kenbx 61 10 multiplicity multiplicity NN cord-002530-ao7kenbx 61 11 of of IN cord-002530-ao7kenbx 61 12 infection infection NN cord-002530-ao7kenbx 61 13 ( ( -LRB- cord-002530-ao7kenbx 61 14 MOI MOI NNP cord-002530-ao7kenbx 61 15 ) ) -RRB- cord-002530-ao7kenbx 61 16 of of IN cord-002530-ao7kenbx 61 17 three three CD cord-002530-ao7kenbx 61 18 with with IN cord-002530-ao7kenbx 61 19 TB40E tb40e NN cord-002530-ao7kenbx 61 20 - - HYPH cord-002530-ao7kenbx 61 21 GFP GFP NNP cord-002530-ao7kenbx 61 22 . . . cord-002530-ao7kenbx 62 1 Supernatant Supernatant NNP cord-002530-ao7kenbx 62 2 was be VBD cord-002530-ao7kenbx 62 3 collected collect VBN cord-002530-ao7kenbx 62 4 at at IN cord-002530-ao7kenbx 62 5 24hour 24hour JJ cord-002530-ao7kenbx 62 6 time time NN cord-002530-ao7kenbx 62 7 points point NNS cord-002530-ao7kenbx 62 8 for for IN cord-002530-ao7kenbx 62 9 seven seven CD cord-002530-ao7kenbx 62 10 days day NNS cord-002530-ao7kenbx 62 11 total total JJ cord-002530-ao7kenbx 62 12 . . . cord-002530-ao7kenbx 63 1 Knockdown knockdown NN cord-002530-ao7kenbx 63 2 of of IN cord-002530-ao7kenbx 63 3 VCP VCP NNP cord-002530-ao7kenbx 63 4 resulted result VBD cord-002530-ao7kenbx 63 5 in in IN cord-002530-ao7kenbx 63 6 significant significant JJ cord-002530-ao7kenbx 63 7 reduction reduction NN cord-002530-ao7kenbx 63 8 in in IN cord-002530-ao7kenbx 63 9 HCMV HCMV NNP cord-002530-ao7kenbx 63 10 replication replication NN cord-002530-ao7kenbx 63 11 , , , cord-002530-ao7kenbx 63 12 with with IN cord-002530-ao7kenbx 63 13 viral viral JJ cord-002530-ao7kenbx 63 14 titers titer NNS cord-002530-ao7kenbx 63 15 over over IN cord-002530-ao7kenbx 63 16 four four CD cord-002530-ao7kenbx 63 17 log log NN cord-002530-ao7kenbx 63 18 10 10 CD cord-002530-ao7kenbx 63 19 lower low JJR cord-002530-ao7kenbx 63 20 in in IN cord-002530-ao7kenbx 63 21 cells cell NNS cord-002530-ao7kenbx 63 22 depleted deplete VBN cord-002530-ao7kenbx 63 23 of of IN cord-002530-ao7kenbx 63 24 VCP vcp NN cord-002530-ao7kenbx 63 25 compared compare VBN cord-002530-ao7kenbx 63 26 to to IN cord-002530-ao7kenbx 63 27 negative negative JJ cord-002530-ao7kenbx 63 28 control control NN cord-002530-ao7kenbx 63 29 cells cell NNS cord-002530-ao7kenbx 63 30 at at IN cord-002530-ao7kenbx 63 31 day day NN cord-002530-ao7kenbx 63 32 seven seven CD cord-002530-ao7kenbx 63 33 ( ( -LRB- cord-002530-ao7kenbx 63 34 Fig Fig NNP cord-002530-ao7kenbx 63 35 2D 2d NN cord-002530-ao7kenbx 63 36 ) ) -RRB- cord-002530-ao7kenbx 63 37 . . . cord-002530-ao7kenbx 64 1 No no DT cord-002530-ao7kenbx 64 2 amplification amplification NN cord-002530-ao7kenbx 64 3 of of IN cord-002530-ao7kenbx 64 4 infectious infectious JJ cord-002530-ao7kenbx 64 5 virus virus NN cord-002530-ao7kenbx 64 6 was be VBD cord-002530-ao7kenbx 64 7 observed observe VBN cord-002530-ao7kenbx 64 8 in in IN cord-002530-ao7kenbx 64 9 cells cell NNS cord-002530-ao7kenbx 64 10 knocked knock VBD cord-002530-ao7kenbx 64 11 down down RP cord-002530-ao7kenbx 64 12 for for IN cord-002530-ao7kenbx 64 13 VCP VCP NNP cord-002530-ao7kenbx 64 14 , , , cord-002530-ao7kenbx 64 15 suggesting suggest VBG cord-002530-ao7kenbx 64 16 a a DT cord-002530-ao7kenbx 64 17 complete complete JJ cord-002530-ao7kenbx 64 18 block block NN cord-002530-ao7kenbx 64 19 in in IN cord-002530-ao7kenbx 64 20 virus virus NN cord-002530-ao7kenbx 64 21 replication replication NN cord-002530-ao7kenbx 64 22 . . . cord-002530-ao7kenbx 65 1 Cell cell NN cord-002530-ao7kenbx 65 2 viability viability NN cord-002530-ao7kenbx 65 3 assays assay NNS cord-002530-ao7kenbx 65 4 showed show VBD cord-002530-ao7kenbx 65 5 a a DT cord-002530-ao7kenbx 65 6 moderate moderate JJ cord-002530-ao7kenbx 65 7 decrease decrease NN cord-002530-ao7kenbx 65 8 in in IN cord-002530-ao7kenbx 65 9 cell cell NN cord-002530-ao7kenbx 65 10 viability viability NN cord-002530-ao7kenbx 65 11 at at IN cord-002530-ao7kenbx 65 12 5 5 CD cord-002530-ao7kenbx 65 13 days day NNS cord-002530-ao7kenbx 65 14 post post NN cord-002530-ao7kenbx 65 15 transfection transfection NN cord-002530-ao7kenbx 65 16 with with IN cord-002530-ao7kenbx 65 17 VCP VCP NNP cord-002530-ao7kenbx 65 18 siRNA siRNA NNP cord-002530-ao7kenbx 65 19 compared compare VBN cord-002530-ao7kenbx 65 20 to to IN cord-002530-ao7kenbx 65 21 negative negative JJ cord-002530-ao7kenbx 65 22 control control NN cord-002530-ao7kenbx 65 23 siRNA siRNA NNP cord-002530-ao7kenbx 65 24 , , , cord-002530-ao7kenbx 65 25 although although IN cord-002530-ao7kenbx 65 26 visual visual JJ cord-002530-ao7kenbx 65 27 inspection inspection NN cord-002530-ao7kenbx 65 28 of of IN cord-002530-ao7kenbx 65 29 cells cell NNS cord-002530-ao7kenbx 65 30 did do VBD cord-002530-ao7kenbx 65 31 not not RB cord-002530-ao7kenbx 65 32 indicate indicate VB cord-002530-ao7kenbx 65 33 gross gross JJ cord-002530-ao7kenbx 65 34 cytotoxicity cytotoxicity NN cord-002530-ao7kenbx 65 35 and and CC cord-002530-ao7kenbx 65 36 the the DT cord-002530-ao7kenbx 65 37 reduction reduction NN cord-002530-ao7kenbx 65 38 is be VBZ cord-002530-ao7kenbx 65 39 not not RB cord-002530-ao7kenbx 65 40 sufficient sufficient JJ cord-002530-ao7kenbx 65 41 to to TO cord-002530-ao7kenbx 65 42 account account VB cord-002530-ao7kenbx 65 43 for for IN cord-002530-ao7kenbx 65 44 the the DT cord-002530-ao7kenbx 65 45 substantial substantial JJ cord-002530-ao7kenbx 65 46 reduction reduction NN cord-002530-ao7kenbx 65 47 in in IN cord-002530-ao7kenbx 65 48 virus virus NN cord-002530-ao7kenbx 65 49 replication replication NN cord-002530-ao7kenbx 65 50 ( ( -LRB- cord-002530-ao7kenbx 65 51 S1 S1 NNP cord-002530-ao7kenbx 65 52 Fig Fig NNP cord-002530-ao7kenbx 65 53 ) ) -RRB- cord-002530-ao7kenbx 65 54 . . . cord-002530-ao7kenbx 66 1 VCP VCP NNP cord-002530-ao7kenbx 66 2 is be VBZ cord-002530-ao7kenbx 66 3 required require VBN cord-002530-ao7kenbx 66 4 for for IN cord-002530-ao7kenbx 66 5 IE2 ie2 JJ cord-002530-ao7kenbx 66 6 expression expression NN cord-002530-ao7kenbx 66 7 but but CC cord-002530-ao7kenbx 66 8 not not RB cord-002530-ao7kenbx 66 9 IE1 ie1 NN cord-002530-ao7kenbx 66 10 expression expression NN cord-002530-ao7kenbx 67 1 Further further JJ cord-002530-ao7kenbx 67 2 characterization characterization NN cord-002530-ao7kenbx 67 3 was be VBD cord-002530-ao7kenbx 67 4 performed perform VBN cord-002530-ao7kenbx 67 5 to to TO cord-002530-ao7kenbx 67 6 determine determine VB cord-002530-ao7kenbx 67 7 at at IN cord-002530-ao7kenbx 67 8 what what WDT cord-002530-ao7kenbx 67 9 stage stage NN cord-002530-ao7kenbx 67 10 of of IN cord-002530-ao7kenbx 67 11 the the DT cord-002530-ao7kenbx 67 12 HCMV HCMV NNP cord-002530-ao7kenbx 67 13 replication replication NN cord-002530-ao7kenbx 67 14 cycle cycle NN cord-002530-ao7kenbx 67 15 VCP VCP NNP cord-002530-ao7kenbx 67 16 is be VBZ cord-002530-ao7kenbx 67 17 required require VBN cord-002530-ao7kenbx 67 18 . . . cord-002530-ao7kenbx 68 1 Analysis analysis NN cord-002530-ao7kenbx 68 2 of of IN cord-002530-ao7kenbx 68 3 GFP GFP NNP cord-002530-ao7kenbx 68 4 fluorescence fluorescence NN cord-002530-ao7kenbx 68 5 at at IN cord-002530-ao7kenbx 68 6 48 48 CD cord-002530-ao7kenbx 68 7 hours hour NNS cord-002530-ao7kenbx 68 8 post post NN cord-002530-ao7kenbx 68 9 infection infection NN cord-002530-ao7kenbx 68 10 ( ( -LRB- cord-002530-ao7kenbx 68 11 HPI HPI NNP cord-002530-ao7kenbx 68 12 ) ) -RRB- cord-002530-ao7kenbx 68 13 indicated indicate VBD cord-002530-ao7kenbx 68 14 that that IN cord-002530-ao7kenbx 68 15 all all DT cord-002530-ao7kenbx 68 16 cells cell NNS cord-002530-ao7kenbx 68 17 were be VBD cord-002530-ao7kenbx 68 18 infected infect VBN cord-002530-ao7kenbx 68 19 , , , cord-002530-ao7kenbx 68 20 demonstrating demonstrate VBG cord-002530-ao7kenbx 68 21 that that IN cord-002530-ao7kenbx 68 22 VCP VCP NNP cord-002530-ao7kenbx 68 23 expression expression NN cord-002530-ao7kenbx 68 24 is be VBZ cord-002530-ao7kenbx 68 25 not not RB cord-002530-ao7kenbx 68 26 required require VBN cord-002530-ao7kenbx 68 27 for for IN cord-002530-ao7kenbx 68 28 virus virus NN cord-002530-ao7kenbx 68 29 entry entry NN cord-002530-ao7kenbx 68 30 , , , cord-002530-ao7kenbx 68 31 translocation translocation NN cord-002530-ao7kenbx 68 32 of of IN cord-002530-ao7kenbx 68 33 genome genome NN cord-002530-ao7kenbx 68 34 to to IN cord-002530-ao7kenbx 68 35 the the DT cord-002530-ao7kenbx 68 36 nucleus nucleus NN cord-002530-ao7kenbx 68 37 or or CC cord-002530-ao7kenbx 68 38 initial initial JJ cord-002530-ao7kenbx 68 39 transcription transcription NN cord-002530-ao7kenbx 68 40 of of IN cord-002530-ao7kenbx 68 41 the the DT cord-002530-ao7kenbx 68 42 viral viral JJ cord-002530-ao7kenbx 68 43 genome genome NN cord-002530-ao7kenbx 68 44 ( ( -LRB- cord-002530-ao7kenbx 68 45 Fig Fig NNP cord-002530-ao7kenbx 68 46 3A 3a CD cord-002530-ao7kenbx 68 47 ) ) -RRB- cord-002530-ao7kenbx 68 48 . . . cord-002530-ao7kenbx 69 1 Western western JJ cord-002530-ao7kenbx 69 2 blot blot NN cord-002530-ao7kenbx 69 3 analysis analysis NN cord-002530-ao7kenbx 69 4 was be VBD cord-002530-ao7kenbx 69 5 performed perform VBN cord-002530-ao7kenbx 69 6 to to TO cord-002530-ao7kenbx 69 7 measure measure VB cord-002530-ao7kenbx 69 8 the the DT cord-002530-ao7kenbx 69 9 levels level NNS cord-002530-ao7kenbx 69 10 of of IN cord-002530-ao7kenbx 69 11 each each DT cord-002530-ao7kenbx 69 12 of of IN cord-002530-ao7kenbx 69 13 the the DT cord-002530-ao7kenbx 69 14 major major JJ cord-002530-ao7kenbx 69 15 kinetic kinetic JJ cord-002530-ao7kenbx 69 16 classes class NNS cord-002530-ao7kenbx 69 17 of of IN cord-002530-ao7kenbx 69 18 HCMV HCMV NNP cord-002530-ao7kenbx 69 19 genes gene NNS cord-002530-ao7kenbx 69 20 , , , cord-002530-ao7kenbx 69 21 including include VBG cord-002530-ao7kenbx 69 22 immediate immediate JJ cord-002530-ao7kenbx 69 23 early early JJ cord-002530-ao7kenbx 69 24 ( ( -LRB- cord-002530-ao7kenbx 69 25 IE1 ie1 NN cord-002530-ao7kenbx 69 26 and and CC cord-002530-ao7kenbx 69 27 IE2 IE2 NNP cord-002530-ao7kenbx 69 28 ) ) -RRB- cord-002530-ao7kenbx 69 29 , , , cord-002530-ao7kenbx 69 30 early early JJ cord-002530-ao7kenbx 69 31 ( ( -LRB- cord-002530-ao7kenbx 69 32 pp52 pp52 NN cord-002530-ao7kenbx 69 33 ) ) -RRB- cord-002530-ao7kenbx 69 34 and and CC cord-002530-ao7kenbx 69 35 late late JJ cord-002530-ao7kenbx 69 36 ( ( -LRB- cord-002530-ao7kenbx 69 37 pp28 pp28 NNP cord-002530-ao7kenbx 69 38 ) ) -RRB- cord-002530-ao7kenbx 69 39 , , , cord-002530-ao7kenbx 69 40 to to TO cord-002530-ao7kenbx 69 41 define define VB cord-002530-ao7kenbx 69 42 when when WRB cord-002530-ao7kenbx 69 43 disruption disruption NN cord-002530-ao7kenbx 69 44 in in IN cord-002530-ao7kenbx 69 45 virus virus NN cord-002530-ao7kenbx 69 46 replication replication NN cord-002530-ao7kenbx 69 47 occurs occur VBZ cord-002530-ao7kenbx 69 48 ( ( -LRB- cord-002530-ao7kenbx 69 49 Fig Fig NNP cord-002530-ao7kenbx 69 50 3B 3b CD cord-002530-ao7kenbx 69 51 ) ) -RRB- cord-002530-ao7kenbx 69 52 . . . cord-002530-ao7kenbx 70 1 In in IN cord-002530-ao7kenbx 70 2 control control NN cord-002530-ao7kenbx 70 3 cells cell NNS cord-002530-ao7kenbx 70 4 , , , cord-002530-ao7kenbx 70 5 protein protein NN cord-002530-ao7kenbx 70 6 expression expression NN cord-002530-ao7kenbx 70 7 of of IN cord-002530-ao7kenbx 70 8 each each DT cord-002530-ao7kenbx 70 9 class class NN cord-002530-ao7kenbx 70 10 of of IN cord-002530-ao7kenbx 70 11 virus virus NN cord-002530-ao7kenbx 70 12 gene gene NN cord-002530-ao7kenbx 70 13 is be VBZ cord-002530-ao7kenbx 70 14 clearly clearly RB cord-002530-ao7kenbx 70 15 observed observe VBN cord-002530-ao7kenbx 70 16 . . . cord-002530-ao7kenbx 71 1 However however RB cord-002530-ao7kenbx 71 2 , , , cord-002530-ao7kenbx 71 3 in in IN cord-002530-ao7kenbx 71 4 cells cell NNS cord-002530-ao7kenbx 71 5 knocked knock VBD cord-002530-ao7kenbx 71 6 down down RP cord-002530-ao7kenbx 71 7 for for IN cord-002530-ao7kenbx 71 8 VCP VCP NNP cord-002530-ao7kenbx 71 9 , , , cord-002530-ao7kenbx 71 10 neither neither CC cord-002530-ao7kenbx 71 11 IE2 ie2 NN cord-002530-ao7kenbx 71 12 nor nor CC cord-002530-ao7kenbx 71 13 downstream downstream JJ cord-002530-ao7kenbx 71 14 viral viral JJ cord-002530-ao7kenbx 71 15 gene gene NN cord-002530-ao7kenbx 71 16 expression expression NN cord-002530-ao7kenbx 71 17 was be VBD cord-002530-ao7kenbx 71 18 detected detect VBN cord-002530-ao7kenbx 71 19 . . . cord-002530-ao7kenbx 72 1 Strikingly strikingly RB cord-002530-ao7kenbx 72 2 , , , cord-002530-ao7kenbx 72 3 despite despite IN cord-002530-ao7kenbx 72 4 being be VBG cord-002530-ao7kenbx 72 5 encoded encode VBN cord-002530-ao7kenbx 72 6 by by IN cord-002530-ao7kenbx 72 7 the the DT cord-002530-ao7kenbx 72 8 same same JJ cord-002530-ao7kenbx 72 9 primary primary JJ cord-002530-ao7kenbx 72 10 transcript transcript NN cord-002530-ao7kenbx 72 11 , , , cord-002530-ao7kenbx 72 12 IE1 ie1 NN cord-002530-ao7kenbx 72 13 expression expression NN cord-002530-ao7kenbx 72 14 levels level NNS cord-002530-ao7kenbx 72 15 were be VBD cord-002530-ao7kenbx 72 16 higher high JJR cord-002530-ao7kenbx 72 17 relative relative JJ cord-002530-ao7kenbx 72 18 to to IN cord-002530-ao7kenbx 72 19 control control NN cord-002530-ao7kenbx 72 20 cells cell NNS cord-002530-ao7kenbx 72 21 , , , cord-002530-ao7kenbx 72 22 up up RB cord-002530-ao7kenbx 72 23 until until IN cord-002530-ao7kenbx 72 24 day day NN cord-002530-ao7kenbx 72 25 four four CD cord-002530-ao7kenbx 72 26 post post NN cord-002530-ao7kenbx 72 27 infection infection NN cord-002530-ao7kenbx 72 28 . . . cord-002530-ao7kenbx 73 1 This this DT cord-002530-ao7kenbx 73 2 data data NN cord-002530-ao7kenbx 73 3 indicates indicate VBZ cord-002530-ao7kenbx 73 4 that that IN cord-002530-ao7kenbx 73 5 VCP VCP NNP cord-002530-ao7kenbx 73 6 expression expression NN cord-002530-ao7kenbx 73 7 is be VBZ cord-002530-ao7kenbx 73 8 required require VBN cord-002530-ao7kenbx 73 9 for for IN cord-002530-ao7kenbx 73 10 the the DT cord-002530-ao7kenbx 73 11 onset onset NN cord-002530-ao7kenbx 73 12 of of IN cord-002530-ao7kenbx 73 13 HCMV HCMV NNP cord-002530-ao7kenbx 73 14 replication replication NN cord-002530-ao7kenbx 73 15 and and CC cord-002530-ao7kenbx 73 16 suggests suggest VBZ cord-002530-ao7kenbx 73 17 knockdown knockdown NN cord-002530-ao7kenbx 73 18 of of IN cord-002530-ao7kenbx 73 19 VCP VCP NNP cord-002530-ao7kenbx 73 20 affects affect VBZ cord-002530-ao7kenbx 73 21 expression expression NN cord-002530-ao7kenbx 73 22 of of IN cord-002530-ao7kenbx 73 23 the the DT cord-002530-ao7kenbx 73 24 major major JJ cord-002530-ao7kenbx 73 25 immediate immediate JJ cord-002530-ao7kenbx 73 26 early early JJ cord-002530-ao7kenbx 73 27 genes gene NNS cord-002530-ao7kenbx 73 28 . . . cord-002530-ao7kenbx 74 1 Because because IN cord-002530-ao7kenbx 74 2 knockdown knockdown NN cord-002530-ao7kenbx 74 3 of of IN cord-002530-ao7kenbx 74 4 VCP VCP NNP cord-002530-ao7kenbx 74 5 resulted result VBD cord-002530-ao7kenbx 74 6 in in IN cord-002530-ao7kenbx 74 7 specific specific JJ cord-002530-ao7kenbx 74 8 loss loss NN cord-002530-ao7kenbx 74 9 of of IN cord-002530-ao7kenbx 74 10 IE2 ie2 NN cord-002530-ao7kenbx 74 11 but but CC cord-002530-ao7kenbx 74 12 not not RB cord-002530-ao7kenbx 74 13 IE1 ie1 NN cord-002530-ao7kenbx 74 14 , , , cord-002530-ao7kenbx 74 15 we -PRON- PRP cord-002530-ao7kenbx 74 16 hypothesized hypothesize VBD cord-002530-ao7kenbx 74 17 that that IN cord-002530-ao7kenbx 74 18 VCP VCP NNP cord-002530-ao7kenbx 74 19 may may MD cord-002530-ao7kenbx 74 20 play play VB cord-002530-ao7kenbx 74 21 a a DT cord-002530-ao7kenbx 74 22 role role NN cord-002530-ao7kenbx 74 23 in in IN cord-002530-ao7kenbx 74 24 IE2 ie2 JJ cord-002530-ao7kenbx 74 25 protein protein NN cord-002530-ao7kenbx 74 26 stability stability NN cord-002530-ao7kenbx 74 27 , , , cord-002530-ao7kenbx 74 28 transcript transcript NN cord-002530-ao7kenbx 74 29 stability stability NN cord-002530-ao7kenbx 74 30 or or CC cord-002530-ao7kenbx 74 31 regulation regulation NN cord-002530-ao7kenbx 74 32 of of IN cord-002530-ao7kenbx 74 33 alternative alternative JJ cord-002530-ao7kenbx 74 34 splicing splicing NN cord-002530-ao7kenbx 74 35 and and CC cord-002530-ao7kenbx 74 36 polyadenylation polyadenylation NN cord-002530-ao7kenbx 74 37 . . . cord-002530-ao7kenbx 75 1 To to TO cord-002530-ao7kenbx 75 2 determine determine VB cord-002530-ao7kenbx 75 3 whether whether IN cord-002530-ao7kenbx 75 4 VCP VCP NNP cord-002530-ao7kenbx 75 5 was be VBD cord-002530-ao7kenbx 75 6 required require VBN cord-002530-ao7kenbx 75 7 for for IN cord-002530-ao7kenbx 75 8 IE2 ie2 JJ cord-002530-ao7kenbx 75 9 protein protein NN cord-002530-ao7kenbx 75 10 stability stability NN cord-002530-ao7kenbx 75 11 we -PRON- PRP cord-002530-ao7kenbx 75 12 inhibited inhibit VBD cord-002530-ao7kenbx 75 13 the the DT cord-002530-ao7kenbx 75 14 two two CD cord-002530-ao7kenbx 75 15 main main JJ cord-002530-ao7kenbx 75 16 pathways pathway NNS cord-002530-ao7kenbx 75 17 of of IN cord-002530-ao7kenbx 75 18 protein protein NN cord-002530-ao7kenbx 75 19 degradation degradation NN cord-002530-ao7kenbx 75 20 using use VBG cord-002530-ao7kenbx 75 21 MG132 mg132 NN cord-002530-ao7kenbx 75 22 ( ( -LRB- cord-002530-ao7kenbx 75 23 proteasome proteasome VBN cord-002530-ao7kenbx 75 24 inhibitorubiquitin inhibitorubiquitin NNP cord-002530-ao7kenbx 75 25 dependent dependent JJ cord-002530-ao7kenbx 75 26 ) ) -RRB- cord-002530-ao7kenbx 75 27 and and CC cord-002530-ao7kenbx 75 28 pepstatin pepstatin NNP cord-002530-ao7kenbx 75 29 A A NNP cord-002530-ao7kenbx 75 30 or or CC cord-002530-ao7kenbx 75 31 E64 E64 NNP cord-002530-ao7kenbx 75 32 ( ( -LRB- cord-002530-ao7kenbx 75 33 protease protease NN cord-002530-ao7kenbx 75 34 inhibitors inhibitor NNS cord-002530-ao7kenbx 75 35 - - HYPH cord-002530-ao7kenbx 75 36 ubiquitin ubiquitin NN cord-002530-ao7kenbx 75 37 independent independent NN cord-002530-ao7kenbx 75 38 ) ) -RRB- cord-002530-ao7kenbx 75 39 in in IN cord-002530-ao7kenbx 75 40 the the DT cord-002530-ao7kenbx 75 41 context context NN cord-002530-ao7kenbx 75 42 of of IN cord-002530-ao7kenbx 75 43 VCP VCP NNP cord-002530-ao7kenbx 75 44 knockdown knockdown NN cord-002530-ao7kenbx 75 45 ( ( -LRB- cord-002530-ao7kenbx 75 46 Fig Fig NNP cord-002530-ao7kenbx 75 47 4A 4a CD cord-002530-ao7kenbx 75 48 ) ) -RRB- cord-002530-ao7kenbx 75 49 . . . cord-002530-ao7kenbx 76 1 If if IN cord-002530-ao7kenbx 76 2 VCP VCP NNP cord-002530-ao7kenbx 76 3 regulation regulation NN cord-002530-ao7kenbx 76 4 of of IN cord-002530-ao7kenbx 76 5 IE2 ie2 NN cord-002530-ao7kenbx 76 6 was be VBD cord-002530-ao7kenbx 76 7 due due JJ cord-002530-ao7kenbx 76 8 to to IN cord-002530-ao7kenbx 76 9 protein protein NN cord-002530-ao7kenbx 76 10 degradation degradation NN cord-002530-ao7kenbx 76 11 , , , cord-002530-ao7kenbx 76 12 inhibition inhibition NN cord-002530-ao7kenbx 76 13 of of IN cord-002530-ao7kenbx 76 14 these these DT cord-002530-ao7kenbx 76 15 pathways pathway NNS cord-002530-ao7kenbx 76 16 should should MD cord-002530-ao7kenbx 76 17 rescue rescue VB cord-002530-ao7kenbx 76 18 IE2 ie2 NN cord-002530-ao7kenbx 76 19 protein protein NN cord-002530-ao7kenbx 76 20 levels level NNS cord-002530-ao7kenbx 76 21 . . . cord-002530-ao7kenbx 77 1 Neither neither CC cord-002530-ao7kenbx 77 2 MG132 MG132 NNP cord-002530-ao7kenbx 77 3 , , , cord-002530-ao7kenbx 77 4 pepstatin pepstatin NNP cord-002530-ao7kenbx 77 5 A A NNP cord-002530-ao7kenbx 77 6 , , , cord-002530-ao7kenbx 77 7 nor nor CC cord-002530-ao7kenbx 77 8 E64 E64 NNP cord-002530-ao7kenbx 77 9 rescued rescue VBD cord-002530-ao7kenbx 77 10 the the DT cord-002530-ao7kenbx 77 11 loss loss NN cord-002530-ao7kenbx 77 12 of of IN cord-002530-ao7kenbx 77 13 IE2 ie2 JJ cord-002530-ao7kenbx 77 14 proteins protein NNS cord-002530-ao7kenbx 77 15 levels level NNS cord-002530-ao7kenbx 77 16 following follow VBG cord-002530-ao7kenbx 77 17 knockdown knockdown NN cord-002530-ao7kenbx 77 18 of of IN cord-002530-ao7kenbx 77 19 VCP VCP NNP cord-002530-ao7kenbx 77 20 . . . cord-002530-ao7kenbx 78 1 Instead instead RB cord-002530-ao7kenbx 78 2 , , , cord-002530-ao7kenbx 78 3 higher high JJR cord-002530-ao7kenbx 78 4 concentrations concentration NNS cord-002530-ao7kenbx 78 5 of of IN cord-002530-ao7kenbx 78 6 MG132 mg132 NN cord-002530-ao7kenbx 78 7 phenocopied phenocopied JJ cord-002530-ao7kenbx 78 8 VCP VCP NNP cord-002530-ao7kenbx 78 9 knockdown knockdown NN cord-002530-ao7kenbx 78 10 in in IN cord-002530-ao7kenbx 78 11 control control NN cord-002530-ao7kenbx 78 12 cells cell NNS cord-002530-ao7kenbx 78 13 , , , cord-002530-ao7kenbx 78 14 indicating indicate VBG cord-002530-ao7kenbx 78 15 that that IN cord-002530-ao7kenbx 78 16 proteosomal proteosomal JJ cord-002530-ao7kenbx 78 17 function function NN cord-002530-ao7kenbx 78 18 is be VBZ cord-002530-ao7kenbx 78 19 required require VBN cord-002530-ao7kenbx 78 20 for for IN cord-002530-ao7kenbx 78 21 IE2 ie2 NN cord-002530-ao7kenbx 78 22 but but CC cord-002530-ao7kenbx 78 23 not not RB cord-002530-ao7kenbx 78 24 IE1 ie1 NN cord-002530-ao7kenbx 78 25 gene gene NN cord-002530-ao7kenbx 78 26 expression expression NN cord-002530-ao7kenbx 78 27 . . . cord-002530-ao7kenbx 79 1 As as IN cord-002530-ao7kenbx 79 2 VCP VCP NNP cord-002530-ao7kenbx 79 3 targets target NNS cord-002530-ao7kenbx 79 4 ubiquitinated ubiquitinate VBD cord-002530-ao7kenbx 79 5 proteins protein NNS cord-002530-ao7kenbx 79 6 for for IN cord-002530-ao7kenbx 79 7 proteosomal proteosomal JJ cord-002530-ao7kenbx 79 8 degradation degradation NN cord-002530-ao7kenbx 79 9 , , , cord-002530-ao7kenbx 79 10 this this DT cord-002530-ao7kenbx 79 11 result result NN cord-002530-ao7kenbx 79 12 suggests suggest VBZ cord-002530-ao7kenbx 79 13 that that IN cord-002530-ao7kenbx 79 14 an an DT cord-002530-ao7kenbx 79 15 intermediate intermediate JJ cord-002530-ao7kenbx 79 16 protein protein NN cord-002530-ao7kenbx 79 17 , , , cord-002530-ao7kenbx 79 18 targeted target VBN cord-002530-ao7kenbx 79 19 by by IN cord-002530-ao7kenbx 79 20 VCP VCP NNP cord-002530-ao7kenbx 79 21 , , , cord-002530-ao7kenbx 79 22 may may MD cord-002530-ao7kenbx 79 23 inhibit inhibit VB cord-002530-ao7kenbx 79 24 IE2 ie2 JJ cord-002530-ao7kenbx 79 25 expression expression NN cord-002530-ao7kenbx 79 26 and and CC cord-002530-ao7kenbx 79 27 is be VBZ cord-002530-ao7kenbx 79 28 consistent consistent JJ cord-002530-ao7kenbx 79 29 with with IN cord-002530-ao7kenbx 79 30 previous previous JJ cord-002530-ao7kenbx 79 31 publications publication NNS cord-002530-ao7kenbx 79 32 showing show VBG cord-002530-ao7kenbx 79 33 inhibition inhibition NN cord-002530-ao7kenbx 79 34 of of IN cord-002530-ao7kenbx 79 35 the the DT cord-002530-ao7kenbx 79 36 proteasome proteasome NN cord-002530-ao7kenbx 79 37 reducing reduce VBG cord-002530-ao7kenbx 79 38 IE2 ie2 JJ cord-002530-ao7kenbx 79 39 expression expression NN cord-002530-ao7kenbx 79 40 and and CC cord-002530-ao7kenbx 79 41 HCMV HCMV NNP cord-002530-ao7kenbx 79 42 replication replication NN cord-002530-ao7kenbx 79 43 [ [ -LRB- cord-002530-ao7kenbx 79 44 30 30 CD cord-002530-ao7kenbx 79 45 ] ] -RRB- cord-002530-ao7kenbx 79 46 . . . cord-002530-ao7kenbx 80 1 To to TO cord-002530-ao7kenbx 80 2 determine determine VB cord-002530-ao7kenbx 80 3 whether whether IN cord-002530-ao7kenbx 80 4 regulation regulation NN cord-002530-ao7kenbx 80 5 of of IN cord-002530-ao7kenbx 80 6 the the DT cord-002530-ao7kenbx 80 7 MIE MIE NNP cord-002530-ao7kenbx 80 8 genes gene NNS cord-002530-ao7kenbx 80 9 was be VBD cord-002530-ao7kenbx 80 10 occurring occur VBG cord-002530-ao7kenbx 80 11 at at IN cord-002530-ao7kenbx 80 12 the the DT cord-002530-ao7kenbx 80 13 RNA RNA NNP cord-002530-ao7kenbx 80 14 level level NN cord-002530-ao7kenbx 80 15 , , , cord-002530-ao7kenbx 80 16 Northern northern JJ cord-002530-ao7kenbx 80 17 blot blot NN cord-002530-ao7kenbx 80 18 analysis analysis NN cord-002530-ao7kenbx 80 19 was be VBD cord-002530-ao7kenbx 80 20 performed perform VBN cord-002530-ao7kenbx 80 21 . . . cord-002530-ao7kenbx 81 1 Fibroblast Fibroblast NNP cord-002530-ao7kenbx 81 2 cells cell NNS cord-002530-ao7kenbx 81 3 transfected transfecte VBN cord-002530-ao7kenbx 81 4 with with IN cord-002530-ao7kenbx 81 5 siRNA siRNA NNP cord-002530-ao7kenbx 81 6 against against IN cord-002530-ao7kenbx 81 7 VCP VCP NNP cord-002530-ao7kenbx 81 8 or or CC cord-002530-ao7kenbx 81 9 control control NN cord-002530-ao7kenbx 81 10 siRNA siRNA NNP cord-002530-ao7kenbx 81 11 were be VBD cord-002530-ao7kenbx 81 12 infected infect VBN cord-002530-ao7kenbx 81 13 48h 48h CD cord-002530-ao7kenbx 81 14 post post NN cord-002530-ao7kenbx 81 15 transfection transfection NN cord-002530-ao7kenbx 81 16 at at IN cord-002530-ao7kenbx 81 17 high high JJ cord-002530-ao7kenbx 81 18 MOI MOI NNP cord-002530-ao7kenbx 81 19 with with IN cord-002530-ao7kenbx 81 20 TB40E tb40e NN cord-002530-ao7kenbx 81 21 and and CC cord-002530-ao7kenbx 81 22 total total JJ cord-002530-ao7kenbx 81 23 RNA RNA NNP cord-002530-ao7kenbx 81 24 harvested harvest VBN cord-002530-ao7kenbx 81 25 at at IN cord-002530-ao7kenbx 81 26 24 24 CD cord-002530-ao7kenbx 81 27 , , , cord-002530-ao7kenbx 81 28 48 48 CD cord-002530-ao7kenbx 81 29 and and CC cord-002530-ao7kenbx 81 30 72 72 CD cord-002530-ao7kenbx 81 31 HPI HPI NNP cord-002530-ao7kenbx 81 32 . . . cord-002530-ao7kenbx 82 1 As as IN cord-002530-ao7kenbx 82 2 shown show VBN cord-002530-ao7kenbx 82 3 in in IN cord-002530-ao7kenbx 82 4 Fig Fig NNP cord-002530-ao7kenbx 82 5 4B 4b NN cord-002530-ao7kenbx 82 6 , , , cord-002530-ao7kenbx 82 7 knockdown knockdown NN cord-002530-ao7kenbx 82 8 of of IN cord-002530-ao7kenbx 82 9 VCP VCP NNP cord-002530-ao7kenbx 82 10 resulted result VBD cord-002530-ao7kenbx 82 11 in in IN cord-002530-ao7kenbx 82 12 a a DT cord-002530-ao7kenbx 82 13 substantial substantial JJ cord-002530-ao7kenbx 82 14 reduction reduction NN cord-002530-ao7kenbx 82 15 of of IN cord-002530-ao7kenbx 82 16 IE2 IE2 NNP cord-002530-ao7kenbx 82 17 RNA RNA NNP cord-002530-ao7kenbx 82 18 levels level NNS cord-002530-ao7kenbx 82 19 at at IN cord-002530-ao7kenbx 82 20 48 48 CD cord-002530-ao7kenbx 82 21 and and CC cord-002530-ao7kenbx 82 22 72 72 CD cord-002530-ao7kenbx 82 23 HPI HPI NNP cord-002530-ao7kenbx 82 24 , , , cord-002530-ao7kenbx 82 25 including include VBG cord-002530-ao7kenbx 82 26 the the DT cord-002530-ao7kenbx 82 27 smaller small JJR cord-002530-ao7kenbx 82 28 IE60 IE60 NNP cord-002530-ao7kenbx 82 29 and and CC cord-002530-ao7kenbx 82 30 IE40 IE40 NNP cord-002530-ao7kenbx 82 31 species specie NNS cord-002530-ao7kenbx 82 32 . . . cord-002530-ao7kenbx 83 1 This this DT cord-002530-ao7kenbx 83 2 result result NN cord-002530-ao7kenbx 83 3 was be VBD cord-002530-ao7kenbx 83 4 confirmed confirm VBN cord-002530-ao7kenbx 83 5 by by IN cord-002530-ao7kenbx 83 6 qRT qRT NNP cord-002530-ao7kenbx 83 7 - - HYPH cord-002530-ao7kenbx 83 8 PCR PCR NNP cord-002530-ao7kenbx 83 9 , , , cord-002530-ao7kenbx 83 10 using use VBG cord-002530-ao7kenbx 83 11 primers primer NNS cord-002530-ao7kenbx 83 12 specific specific JJ cord-002530-ao7kenbx 83 13 for for IN cord-002530-ao7kenbx 83 14 IE1 IE1 NNP cord-002530-ao7kenbx 83 15 and and CC cord-002530-ao7kenbx 83 16 IE2 IE2 NNP cord-002530-ao7kenbx 83 17 transcript transcript NN cord-002530-ao7kenbx 83 18 . . . cord-002530-ao7kenbx 84 1 Supplemental Supplemental NNP cord-002530-ao7kenbx 84 2 Fig Fig NNP cord-002530-ao7kenbx 84 3 2A 2a NN cord-002530-ao7kenbx 84 4 demonstrates demonstrate VBZ cord-002530-ao7kenbx 84 5 the the DT cord-002530-ao7kenbx 84 6 clear clear JJ cord-002530-ao7kenbx 84 7 difference difference NN cord-002530-ao7kenbx 84 8 in in IN cord-002530-ao7kenbx 84 9 the the DT cord-002530-ao7kenbx 84 10 kinetics kinetic NNS cord-002530-ao7kenbx 84 11 of of IN cord-002530-ao7kenbx 84 12 IE1 IE1 NNP cord-002530-ao7kenbx 84 13 and and CC cord-002530-ao7kenbx 84 14 IE2 IE2 NNP cord-002530-ao7kenbx 84 15 transcript transcript NN cord-002530-ao7kenbx 84 16 accumulation accumulation NN cord-002530-ao7kenbx 84 17 in in IN cord-002530-ao7kenbx 84 18 control control NN cord-002530-ao7kenbx 84 19 cells cell NNS cord-002530-ao7kenbx 84 20 , , , cord-002530-ao7kenbx 84 21 with with IN cord-002530-ao7kenbx 84 22 IE1 ie1 NN cord-002530-ao7kenbx 84 23 transcript transcript NN cord-002530-ao7kenbx 84 24 levels level NNS cord-002530-ao7kenbx 84 25 rapidly rapidly RB cord-002530-ao7kenbx 84 26 increasing increase VBG cord-002530-ao7kenbx 84 27 following follow VBG cord-002530-ao7kenbx 84 28 infection infection NN cord-002530-ao7kenbx 84 29 , , , cord-002530-ao7kenbx 84 30 while while IN cord-002530-ao7kenbx 84 31 IE2 ie2 JJ cord-002530-ao7kenbx 84 32 levels level NNS cord-002530-ao7kenbx 84 33 initially initially RB cord-002530-ao7kenbx 84 34 increase increase VBP cord-002530-ao7kenbx 84 35 , , , cord-002530-ao7kenbx 84 36 then then RB cord-002530-ao7kenbx 84 37 plateau plateau NN cord-002530-ao7kenbx 84 38 between between IN cord-002530-ao7kenbx 84 39 12 12 CD cord-002530-ao7kenbx 84 40 and and CC cord-002530-ao7kenbx 84 41 24 24 CD cord-002530-ao7kenbx 84 42 HPI HPI NNP cord-002530-ao7kenbx 84 43 , , , cord-002530-ao7kenbx 84 44 before before IN cord-002530-ao7kenbx 84 45 accumulating accumulate VBG cord-002530-ao7kenbx 84 46 to to IN cord-002530-ao7kenbx 84 47 substantially substantially RB cord-002530-ao7kenbx 84 48 higher high JJR cord-002530-ao7kenbx 84 49 levels level NNS cord-002530-ao7kenbx 84 50 from from IN cord-002530-ao7kenbx 84 51 24 24 CD cord-002530-ao7kenbx 84 52 HPI HPI NNP cord-002530-ao7kenbx 84 53 onwards onwards RB cord-002530-ao7kenbx 84 54 . . . cord-002530-ao7kenbx 85 1 This this DT cord-002530-ao7kenbx 85 2 accumulation accumulation NN cord-002530-ao7kenbx 85 3 fails fail VBZ cord-002530-ao7kenbx 85 4 to to TO cord-002530-ao7kenbx 85 5 occur occur VB cord-002530-ao7kenbx 85 6 following follow VBG cord-002530-ao7kenbx 85 7 knockdown knockdown NN cord-002530-ao7kenbx 85 8 of of IN cord-002530-ao7kenbx 85 9 VCP VCP NNP cord-002530-ao7kenbx 85 10 , , , cord-002530-ao7kenbx 85 11 where where WRB cord-002530-ao7kenbx 85 12 levels level NNS cord-002530-ao7kenbx 85 13 of of IN cord-002530-ao7kenbx 85 14 IE2 ie2 NN cord-002530-ao7kenbx 85 15 do do VBP cord-002530-ao7kenbx 85 16 not not RB cord-002530-ao7kenbx 85 17 substantially substantially RB cord-002530-ao7kenbx 85 18 increase increase VB cord-002530-ao7kenbx 85 19 after after IN cord-002530-ao7kenbx 85 20 24 24 CD cord-002530-ao7kenbx 85 21 HPI HPI NNP cord-002530-ao7kenbx 85 22 , , , cord-002530-ao7kenbx 85 23 in in IN cord-002530-ao7kenbx 85 24 contrast contrast NN cord-002530-ao7kenbx 85 25 to to TO cord-002530-ao7kenbx 85 26 control control NN cord-002530-ao7kenbx 85 27 cells cell NNS cord-002530-ao7kenbx 85 28 ( ( -LRB- cord-002530-ao7kenbx 85 29 S2B S2B NNS cord-002530-ao7kenbx 85 30 and and CC cord-002530-ao7kenbx 85 31 S2D S2D NNP cord-002530-ao7kenbx 85 32 Fig Fig NNP cord-002530-ao7kenbx 85 33 ) ) -RRB- cord-002530-ao7kenbx 85 34 . . . cord-002530-ao7kenbx 86 1 MIE MIE NNP cord-002530-ao7kenbx 86 2 transcription transcription NN cord-002530-ao7kenbx 86 3 is be VBZ cord-002530-ao7kenbx 86 4 also also RB cord-002530-ao7kenbx 86 5 affected affect VBN cord-002530-ao7kenbx 86 6 at at IN cord-002530-ao7kenbx 86 7 earlier early JJR cord-002530-ao7kenbx 86 8 time time NN cord-002530-ao7kenbx 86 9 points point NNS cord-002530-ao7kenbx 86 10 with with IN cord-002530-ao7kenbx 86 11 levels level NNS cord-002530-ao7kenbx 86 12 of of IN cord-002530-ao7kenbx 86 13 both both CC cord-002530-ao7kenbx 86 14 IE1 ie1 NN cord-002530-ao7kenbx 86 15 and and CC cord-002530-ao7kenbx 86 16 IE2 ie2 NN cord-002530-ao7kenbx 86 17 reduced reduce VBN cord-002530-ao7kenbx 86 18 at at IN cord-002530-ao7kenbx 86 19 6 6 CD cord-002530-ao7kenbx 86 20 HPI HPI NNP cord-002530-ao7kenbx 86 21 and and CC cord-002530-ao7kenbx 86 22 increased increase VBD cord-002530-ao7kenbx 86 23 at at IN cord-002530-ao7kenbx 86 24 24 24 CD cord-002530-ao7kenbx 86 25 HPI HPI NNP cord-002530-ao7kenbx 86 26 ( ( -LRB- cord-002530-ao7kenbx 86 27 S2C S2C NNP cord-002530-ao7kenbx 86 28 and and CC cord-002530-ao7kenbx 86 29 S2D S2D NNP cord-002530-ao7kenbx 86 30 Fig Fig NNP cord-002530-ao7kenbx 86 31 ) ) -RRB- cord-002530-ao7kenbx 86 32 . . . cord-002530-ao7kenbx 87 1 An an DT cord-002530-ao7kenbx 87 2 increase increase NN cord-002530-ao7kenbx 87 3 in in IN cord-002530-ao7kenbx 87 4 IE1 IE1 NNP cord-002530-ao7kenbx 87 5 and and CC cord-002530-ao7kenbx 87 6 IE2 IE2 NNP cord-002530-ao7kenbx 87 7 RNA RNA NNP cord-002530-ao7kenbx 87 8 levels level NNS cord-002530-ao7kenbx 87 9 at at IN cord-002530-ao7kenbx 87 10 24 24 CD cord-002530-ao7kenbx 87 11 HPI HPI NNP cord-002530-ao7kenbx 87 12 may may MD cord-002530-ao7kenbx 87 13 be be VB cord-002530-ao7kenbx 87 14 a a DT cord-002530-ao7kenbx 87 15 result result NN cord-002530-ao7kenbx 87 16 of of IN cord-002530-ao7kenbx 87 17 increased increase VBN cord-002530-ao7kenbx 87 18 MIE MIE NNP cord-002530-ao7kenbx 87 19 promoter promoter NN cord-002530-ao7kenbx 87 20 activity activity NN cord-002530-ao7kenbx 87 21 due due IN cord-002530-ao7kenbx 87 22 to to IN cord-002530-ao7kenbx 87 23 the the DT cord-002530-ao7kenbx 87 24 associated associate VBN cord-002530-ao7kenbx 87 25 loss loss NN cord-002530-ao7kenbx 87 26 of of IN cord-002530-ao7kenbx 87 27 IE2 ie2 JJ cord-002530-ao7kenbx 87 28 protein protein NN cord-002530-ao7kenbx 87 29 expression expression NN cord-002530-ao7kenbx 87 30 at at IN cord-002530-ao7kenbx 87 31 early early JJ cord-002530-ao7kenbx 87 32 time time NN cord-002530-ao7kenbx 87 33 points point NNS cord-002530-ao7kenbx 87 34 , , , cord-002530-ao7kenbx 87 35 as as IN cord-002530-ao7kenbx 87 36 IE2 ie2 NN cord-002530-ao7kenbx 87 37 is be VBZ cord-002530-ao7kenbx 87 38 a a DT cord-002530-ao7kenbx 87 39 negative negative JJ cord-002530-ao7kenbx 87 40 regulator regulator NN cord-002530-ao7kenbx 87 41 of of IN cord-002530-ao7kenbx 87 42 the the DT cord-002530-ao7kenbx 87 43 MIE MIE NNP cord-002530-ao7kenbx 87 44 promoter promoter NN cord-002530-ao7kenbx 87 45 . . . cord-002530-ao7kenbx 88 1 IE1 ie1 NN cord-002530-ao7kenbx 88 2 transcript transcript NN cord-002530-ao7kenbx 88 3 levels level NNS cord-002530-ao7kenbx 88 4 decrease decrease VBP cord-002530-ao7kenbx 88 5 rapidly rapidly RB cord-002530-ao7kenbx 88 6 24 24 CD cord-002530-ao7kenbx 88 7 to to IN cord-002530-ao7kenbx 88 8 48 48 CD cord-002530-ao7kenbx 88 9 HPI HPI NNP cord-002530-ao7kenbx 88 10 , , , cord-002530-ao7kenbx 88 11 while while IN cord-002530-ao7kenbx 88 12 protein protein NN cord-002530-ao7kenbx 88 13 levels level NNS cord-002530-ao7kenbx 88 14 remain remain VBP cord-002530-ao7kenbx 88 15 high high JJ cord-002530-ao7kenbx 88 16 , , , cord-002530-ao7kenbx 88 17 suggesting suggest VBG cord-002530-ao7kenbx 88 18 that that IN cord-002530-ao7kenbx 88 19 IE1 ie1 NN cord-002530-ao7kenbx 88 20 protein protein NN cord-002530-ao7kenbx 88 21 is be VBZ cord-002530-ao7kenbx 88 22 stable stable JJ cord-002530-ao7kenbx 88 23 and and CC cord-002530-ao7kenbx 88 24 the the DT cord-002530-ao7kenbx 88 25 increase increase NN cord-002530-ao7kenbx 88 26 in in IN cord-002530-ao7kenbx 88 27 IE1 ie1 NN cord-002530-ao7kenbx 88 28 transcription transcription NN cord-002530-ao7kenbx 88 29 at at IN cord-002530-ao7kenbx 88 30 24 24 CD cord-002530-ao7kenbx 88 31 hours hour NNS cord-002530-ao7kenbx 88 32 may may MD cord-002530-ao7kenbx 88 33 contribute contribute VB cord-002530-ao7kenbx 88 34 to to IN cord-002530-ao7kenbx 88 35 the the DT cord-002530-ao7kenbx 88 36 prolonged prolonged JJ cord-002530-ao7kenbx 88 37 increase increase NN cord-002530-ao7kenbx 88 38 in in IN cord-002530-ao7kenbx 88 39 IE1 ie1 NN cord-002530-ao7kenbx 88 40 protein protein NN cord-002530-ao7kenbx 88 41 levels level NNS cord-002530-ao7kenbx 88 42 . . . cord-002530-ao7kenbx 89 1 These these DT cord-002530-ao7kenbx 89 2 results result NNS cord-002530-ao7kenbx 89 3 suggest suggest VBP cord-002530-ao7kenbx 89 4 that that IN cord-002530-ao7kenbx 89 5 VCP VCP NNP cord-002530-ao7kenbx 89 6 may may MD cord-002530-ao7kenbx 89 7 be be VB cord-002530-ao7kenbx 89 8 affecting affect VBG cord-002530-ao7kenbx 89 9 other other JJ cord-002530-ao7kenbx 89 10 aspects aspect NNS cord-002530-ao7kenbx 89 11 of of IN cord-002530-ao7kenbx 89 12 MIE MIE NNP cord-002530-ao7kenbx 89 13 transcription transcription NN cord-002530-ao7kenbx 89 14 . . . cord-002530-ao7kenbx 90 1 However however RB cord-002530-ao7kenbx 90 2 , , , cord-002530-ao7kenbx 90 3 Northern northern JJ cord-002530-ao7kenbx 90 4 , , , cord-002530-ao7kenbx 90 5 Western western JJ cord-002530-ao7kenbx 90 6 and and CC cord-002530-ao7kenbx 90 7 qRT qRT NNP cord-002530-ao7kenbx 90 8 - - HYPH cord-002530-ao7kenbx 90 9 PCR PCR NNP cord-002530-ao7kenbx 90 10 data datum NNS cord-002530-ao7kenbx 90 11 are be VBP cord-002530-ao7kenbx 90 12 all all DT cord-002530-ao7kenbx 90 13 consistent consistent JJ cord-002530-ao7kenbx 90 14 with with IN cord-002530-ao7kenbx 90 15 a a DT cord-002530-ao7kenbx 90 16 substantial substantial JJ cord-002530-ao7kenbx 90 17 effect effect NN cord-002530-ao7kenbx 90 18 on on IN cord-002530-ao7kenbx 90 19 IE2 ie2 JJ cord-002530-ao7kenbx 90 20 expression expression NN cord-002530-ao7kenbx 90 21 from from IN cord-002530-ao7kenbx 90 22 24 24 CD cord-002530-ao7kenbx 90 23 HPI HPI NNP cord-002530-ao7kenbx 90 24 onwards onwards RB cord-002530-ao7kenbx 90 25 . . . cord-002530-ao7kenbx 90 26 _SP cord-002530-ao7kenbx 91 1 To to TO cord-002530-ao7kenbx 91 2 determine determine VB cord-002530-ao7kenbx 91 3 whether whether IN cord-002530-ao7kenbx 91 4 loss loss NN cord-002530-ao7kenbx 91 5 of of IN cord-002530-ao7kenbx 91 6 VCP vcp NN cord-002530-ao7kenbx 91 7 results result NNS cord-002530-ao7kenbx 91 8 in in IN cord-002530-ao7kenbx 91 9 specific specific JJ cord-002530-ao7kenbx 91 10 destabilization destabilization NN cord-002530-ao7kenbx 91 11 of of IN cord-002530-ao7kenbx 91 12 IE2 IE2 NNP cord-002530-ao7kenbx 91 13 transcript transcript NN cord-002530-ao7kenbx 91 14 , , , cord-002530-ao7kenbx 91 15 RNA RNA NNP cord-002530-ao7kenbx 91 16 levels level NNS cord-002530-ao7kenbx 91 17 were be VBD cord-002530-ao7kenbx 91 18 measured measure VBN cord-002530-ao7kenbx 91 19 following follow VBG cord-002530-ao7kenbx 91 20 treatment treatment NN cord-002530-ao7kenbx 91 21 of of IN cord-002530-ao7kenbx 91 22 cells cell NNS cord-002530-ao7kenbx 91 23 with with IN cord-002530-ao7kenbx 91 24 actinomycin actinomycin NNS cord-002530-ao7kenbx 91 25 D D NNP cord-002530-ao7kenbx 91 26 48 48 CD cord-002530-ao7kenbx 91 27 HPI HPI NNP cord-002530-ao7kenbx 91 28 . . . cord-002530-ao7kenbx 92 1 Actinomycin Actinomycin NNP cord-002530-ao7kenbx 92 2 D D NNP cord-002530-ao7kenbx 92 3 inhibits inhibit VBZ cord-002530-ao7kenbx 92 4 RNA rna NN cord-002530-ao7kenbx 92 5 polymerase polymerase NN cord-002530-ao7kenbx 92 6 , , , cord-002530-ao7kenbx 92 7 blocking block VBG cord-002530-ao7kenbx 92 8 new new JJ cord-002530-ao7kenbx 92 9 transcription transcription NN cord-002530-ao7kenbx 92 10 of of IN cord-002530-ao7kenbx 92 11 IE1 ie1 NN cord-002530-ao7kenbx 92 12 and and CC cord-002530-ao7kenbx 92 13 IE2 IE2 NNP cord-002530-ao7kenbx 92 14 , , , cord-002530-ao7kenbx 92 15 allowing allow VBG cord-002530-ao7kenbx 92 16 for for IN cord-002530-ao7kenbx 92 17 monitoring monitoring NN cord-002530-ao7kenbx 92 18 of of IN cord-002530-ao7kenbx 92 19 transcript transcript NN cord-002530-ao7kenbx 92 20 stability stability NN cord-002530-ao7kenbx 92 21 over over IN cord-002530-ao7kenbx 92 22 time time NN cord-002530-ao7kenbx 92 23 . . . cord-002530-ao7kenbx 93 1 Total Total NNP cord-002530-ao7kenbx 93 2 RNA RNA NNP cord-002530-ao7kenbx 93 3 was be VBD cord-002530-ao7kenbx 93 4 harvested harvest VBN cord-002530-ao7kenbx 93 5 at at IN cord-002530-ao7kenbx 93 6 the the DT cord-002530-ao7kenbx 93 7 indicated indicate VBN cord-002530-ao7kenbx 93 8 time time NN cord-002530-ao7kenbx 93 9 points point NNS cord-002530-ao7kenbx 93 10 and and CC cord-002530-ao7kenbx 93 11 IE1 ie1 NN cord-002530-ao7kenbx 93 12 and and CC cord-002530-ao7kenbx 93 13 IE2 ie2 JJ cord-002530-ao7kenbx 93 14 transcript transcript NN cord-002530-ao7kenbx 93 15 levels level NNS cord-002530-ao7kenbx 93 16 determined determine VBN cord-002530-ao7kenbx 93 17 by by IN cord-002530-ao7kenbx 93 18 Northern northern JJ cord-002530-ao7kenbx 93 19 blot blot NN cord-002530-ao7kenbx 93 20 analysis analysis NN cord-002530-ao7kenbx 93 21 . . . cord-002530-ao7kenbx 94 1 Calculation calculation NN cord-002530-ao7kenbx 94 2 of of IN cord-002530-ao7kenbx 94 3 the the DT cord-002530-ao7kenbx 94 4 half half JJ cord-002530-ao7kenbx 94 5 - - HYPH cord-002530-ao7kenbx 94 6 life life NN cord-002530-ao7kenbx 94 7 of of IN cord-002530-ao7kenbx 94 8 IE1 ie1 NN cord-002530-ao7kenbx 94 9 and and CC cord-002530-ao7kenbx 94 10 IE2 ie2 JJ cord-002530-ao7kenbx 94 11 transcripts transcript NNS cord-002530-ao7kenbx 94 12 indicated indicate VBD cord-002530-ao7kenbx 94 13 that that IN cord-002530-ao7kenbx 94 14 stability stability NN cord-002530-ao7kenbx 94 15 of of IN cord-002530-ao7kenbx 94 16 both both CC cord-002530-ao7kenbx 94 17 IE1 ie1 NN cord-002530-ao7kenbx 94 18 and and CC cord-002530-ao7kenbx 94 19 IE2 ie2 NN cord-002530-ao7kenbx 94 20 modestly modestly RB cord-002530-ao7kenbx 94 21 increased increase VBD cord-002530-ao7kenbx 94 22 by by IN cord-002530-ao7kenbx 94 23 1.8 1.8 CD cord-002530-ao7kenbx 94 24 and and CC cord-002530-ao7kenbx 94 25 1.5 1.5 CD cord-002530-ao7kenbx 94 26 fold fold VBP cord-002530-ao7kenbx 94 27 respectively respectively RB cord-002530-ao7kenbx 94 28 , , , cord-002530-ao7kenbx 94 29 suggesting suggest VBG cord-002530-ao7kenbx 94 30 loss loss NN cord-002530-ao7kenbx 94 31 of of IN cord-002530-ao7kenbx 94 32 VCP vcp NN cord-002530-ao7kenbx 94 33 does do VBZ cord-002530-ao7kenbx 94 34 not not RB cord-002530-ao7kenbx 94 35 result result VB cord-002530-ao7kenbx 94 36 in in IN cord-002530-ao7kenbx 94 37 IE2 ie2 NN cord-002530-ao7kenbx 94 38 transcript transcript NN cord-002530-ao7kenbx 94 39 destabilization destabilization NN cord-002530-ao7kenbx 94 40 ( ( -LRB- cord-002530-ao7kenbx 94 41 Fig Fig NNP cord-002530-ao7kenbx 94 42 5 5 CD cord-002530-ao7kenbx 94 43 ) ) -RRB- cord-002530-ao7kenbx 94 44 . . . cord-002530-ao7kenbx 95 1 Defining define VBG cord-002530-ao7kenbx 95 2 changes change NNS cord-002530-ao7kenbx 95 3 in in IN cord-002530-ao7kenbx 95 4 alternative alternative JJ cord-002530-ao7kenbx 95 5 splicing splicing NN cord-002530-ao7kenbx 95 6 of of IN cord-002530-ao7kenbx 95 7 IE1 ie1 NN cord-002530-ao7kenbx 95 8 and and CC cord-002530-ao7kenbx 95 9 IE2 ie2 NN cord-002530-ao7kenbx 95 10 is be VBZ cord-002530-ao7kenbx 95 11 challenging challenging JJ cord-002530-ao7kenbx 95 12 as as IN cord-002530-ao7kenbx 95 13 multiple multiple JJ cord-002530-ao7kenbx 95 14 factors factor NNS cord-002530-ao7kenbx 95 15 , , , cord-002530-ao7kenbx 95 16 including include VBG cord-002530-ao7kenbx 95 17 promoter promoter NN cord-002530-ao7kenbx 95 18 activity activity NN cord-002530-ao7kenbx 95 19 , , , cord-002530-ao7kenbx 95 20 RNA RNA NNP cord-002530-ao7kenbx 95 21 stability stability NN cord-002530-ao7kenbx 95 22 and and CC cord-002530-ao7kenbx 95 23 viral viral JJ cord-002530-ao7kenbx 95 24 genome genome NN cord-002530-ao7kenbx 95 25 amplification amplification NN cord-002530-ao7kenbx 95 26 can can MD cord-002530-ao7kenbx 95 27 all all RB cord-002530-ao7kenbx 95 28 contribute contribute VB cord-002530-ao7kenbx 95 29 to to IN cord-002530-ao7kenbx 95 30 an an DT cord-002530-ao7kenbx 95 31 increase increase NN cord-002530-ao7kenbx 95 32 or or CC cord-002530-ao7kenbx 95 33 decrease decrease NN cord-002530-ao7kenbx 95 34 in in IN cord-002530-ao7kenbx 95 35 total total JJ cord-002530-ao7kenbx 95 36 IE1 IE1 NNP cord-002530-ao7kenbx 95 37 and and CC cord-002530-ao7kenbx 95 38 IE2 IE2 NNP cord-002530-ao7kenbx 95 39 mRNA mRNA NNP cord-002530-ao7kenbx 95 40 levels level NNS cord-002530-ao7kenbx 95 41 . . . cord-002530-ao7kenbx 96 1 To to TO cord-002530-ao7kenbx 96 2 determine determine VB cord-002530-ao7kenbx 96 3 whether whether IN cord-002530-ao7kenbx 96 4 knockdown knockdown NN cord-002530-ao7kenbx 96 5 of of IN cord-002530-ao7kenbx 96 6 VCP VCP NNP cord-002530-ao7kenbx 96 7 altered alter VBN cord-002530-ao7kenbx 96 8 differential differential JJ cord-002530-ao7kenbx 96 9 splicing splicing NN cord-002530-ao7kenbx 96 10 of of IN cord-002530-ao7kenbx 96 11 the the DT cord-002530-ao7kenbx 96 12 MIE MIE NNP cord-002530-ao7kenbx 96 13 region region NN cord-002530-ao7kenbx 96 14 , , , cord-002530-ao7kenbx 96 15 RNAseq rnaseq NN cord-002530-ao7kenbx 96 16 analysis analysis NN cord-002530-ao7kenbx 96 17 was be VBD cord-002530-ao7kenbx 96 18 performed perform VBN cord-002530-ao7kenbx 96 19 . . . cord-002530-ao7kenbx 97 1 This this DT cord-002530-ao7kenbx 97 2 allows allow VBZ cord-002530-ao7kenbx 97 3 a a DT cord-002530-ao7kenbx 97 4 direct direct JJ cord-002530-ao7kenbx 97 5 comparison comparison NN cord-002530-ao7kenbx 97 6 of of IN cord-002530-ao7kenbx 97 7 read read NN cord-002530-ao7kenbx 97 8 counts count VBZ cord-002530-ao7kenbx 97 9 from from IN cord-002530-ao7kenbx 97 10 the the DT cord-002530-ao7kenbx 97 11 first first JJ cord-002530-ao7kenbx 97 12 three three CD cord-002530-ao7kenbx 97 13 shared share VBN cord-002530-ao7kenbx 97 14 exons exon NNS cord-002530-ao7kenbx 97 15 of of IN cord-002530-ao7kenbx 97 16 the the DT cord-002530-ao7kenbx 97 17 MIE MIE NNP cord-002530-ao7kenbx 97 18 transcripts transcript NNS cord-002530-ao7kenbx 97 19 to to IN cord-002530-ao7kenbx 97 20 the the DT cord-002530-ao7kenbx 97 21 IE1 ie1 NN cord-002530-ao7kenbx 97 22 and and CC cord-002530-ao7kenbx 97 23 IE2 ie2 JJ cord-002530-ao7kenbx 97 24 specific specific JJ cord-002530-ao7kenbx 97 25 exons exon NNS cord-002530-ao7kenbx 97 26 four four CD cord-002530-ao7kenbx 97 27 and and CC cord-002530-ao7kenbx 97 28 five five CD cord-002530-ao7kenbx 97 29 , , , cord-002530-ao7kenbx 97 30 respectively respectively RB cord-002530-ao7kenbx 97 31 . . . cord-002530-ao7kenbx 98 1 This this DT cord-002530-ao7kenbx 98 2 controls control VBZ cord-002530-ao7kenbx 98 3 for for IN cord-002530-ao7kenbx 98 4 changes change NNS cord-002530-ao7kenbx 98 5 in in IN cord-002530-ao7kenbx 98 6 promoter promoter NN cord-002530-ao7kenbx 98 7 activity activity NN cord-002530-ao7kenbx 98 8 and and CC cord-002530-ao7kenbx 98 9 effects effect NNS cord-002530-ao7kenbx 98 10 of of IN cord-002530-ao7kenbx 98 11 genome genome NN cord-002530-ao7kenbx 98 12 amplification amplification NN cord-002530-ao7kenbx 98 13 . . . cord-002530-ao7kenbx 99 1 Therefore therefore RB cord-002530-ao7kenbx 99 2 , , , cord-002530-ao7kenbx 99 3 based base VBN cord-002530-ao7kenbx 99 4 on on IN cord-002530-ao7kenbx 99 5 our -PRON- PRP$ cord-002530-ao7kenbx 99 6 current current JJ cord-002530-ao7kenbx 99 7 understanding understanding NN cord-002530-ao7kenbx 99 8 of of IN cord-002530-ao7kenbx 99 9 RNA RNA NNP cord-002530-ao7kenbx 99 10 processing processing NN cord-002530-ao7kenbx 99 11 , , , cord-002530-ao7kenbx 99 12 changes change NNS cord-002530-ao7kenbx 99 13 in in IN cord-002530-ao7kenbx 99 14 the the DT cord-002530-ao7kenbx 99 15 absolute absolute JJ cord-002530-ao7kenbx 99 16 ratio ratio NN cord-002530-ao7kenbx 99 17 of of IN cord-002530-ao7kenbx 99 18 exon exon NN cord-002530-ao7kenbx 99 19 four four CD cord-002530-ao7kenbx 99 20 or or CC cord-002530-ao7kenbx 99 21 five five CD cord-002530-ao7kenbx 99 22 to to IN cord-002530-ao7kenbx 99 23 the the DT cord-002530-ao7kenbx 99 24 shared share VBN cord-002530-ao7kenbx 99 25 exons exon NNS cord-002530-ao7kenbx 99 26 must must MD cord-002530-ao7kenbx 99 27 be be VB cord-002530-ao7kenbx 99 28 due due JJ cord-002530-ao7kenbx 99 29 to to IN cord-002530-ao7kenbx 99 30 changes change NNS cord-002530-ao7kenbx 99 31 in in IN cord-002530-ao7kenbx 99 32 splicing splicing NN cord-002530-ao7kenbx 99 33 or or CC cord-002530-ao7kenbx 99 34 changes change NNS cord-002530-ao7kenbx 99 35 in in IN cord-002530-ao7kenbx 99 36 RNA RNA NNP cord-002530-ao7kenbx 99 37 stability stability NN cord-002530-ao7kenbx 99 38 . . . cord-002530-ao7kenbx 100 1 Cells cell NNS cord-002530-ao7kenbx 100 2 were be VBD cord-002530-ao7kenbx 100 3 transfected transfecte VBN cord-002530-ao7kenbx 100 4 with with IN cord-002530-ao7kenbx 100 5 VCP VCP NNP cord-002530-ao7kenbx 100 6 siRNA siRNA NNP cord-002530-ao7kenbx 100 7 or or CC cord-002530-ao7kenbx 100 8 a a DT cord-002530-ao7kenbx 100 9 negative negative JJ cord-002530-ao7kenbx 100 10 control control NN cord-002530-ao7kenbx 100 11 siRNA siRNA NNP cord-002530-ao7kenbx 100 12 and and CC cord-002530-ao7kenbx 100 13 infected infect VBN cord-002530-ao7kenbx 100 14 with with IN cord-002530-ao7kenbx 100 15 HCMV HCMV NNP cord-002530-ao7kenbx 100 16 at at IN cord-002530-ao7kenbx 100 17 an an DT cord-002530-ao7kenbx 100 18 MOI MOI NNP cord-002530-ao7kenbx 100 19 of of IN cord-002530-ao7kenbx 100 20 three three CD cord-002530-ao7kenbx 100 21 . . . cord-002530-ao7kenbx 101 1 Total Total NNP cord-002530-ao7kenbx 101 2 RNA RNA NNP cord-002530-ao7kenbx 101 3 was be VBD cord-002530-ao7kenbx 101 4 harvested harvest VBN cord-002530-ao7kenbx 101 5 at at IN cord-002530-ao7kenbx 101 6 24 24 CD cord-002530-ao7kenbx 101 7 , , , cord-002530-ao7kenbx 101 8 48 48 CD cord-002530-ao7kenbx 101 9 and and CC cord-002530-ao7kenbx 101 10 72 72 CD cord-002530-ao7kenbx 101 11 HPI HPI NNP cord-002530-ao7kenbx 101 12 and and CC cord-002530-ao7kenbx 101 13 subjected subject VBN cord-002530-ao7kenbx 101 14 to to IN cord-002530-ao7kenbx 101 15 strand strand NN cord-002530-ao7kenbx 101 16 - - HYPH cord-002530-ao7kenbx 101 17 specific specific JJ cord-002530-ao7kenbx 101 18 , , , cord-002530-ao7kenbx 101 19 pairedend pairedend NNP cord-002530-ao7kenbx 101 20 , , , cord-002530-ao7kenbx 101 21 Illumina Illumina NNP cord-002530-ao7kenbx 101 22 sequencing sequencing NN cord-002530-ao7kenbx 101 23 . . . cord-002530-ao7kenbx 102 1 The the DT cord-002530-ao7kenbx 102 2 annotated annotated JJ cord-002530-ao7kenbx 102 3 exons exon NNS cord-002530-ao7kenbx 102 4 of of IN cord-002530-ao7kenbx 102 5 the the DT cord-002530-ao7kenbx 102 6 major major JJ cord-002530-ao7kenbx 102 7 immediate immediate JJ cord-002530-ao7kenbx 102 8 early early JJ cord-002530-ao7kenbx 102 9 region region NN cord-002530-ao7kenbx 102 10 were be VBD cord-002530-ao7kenbx 102 11 clearly clearly RB cord-002530-ao7kenbx 102 12 apparent apparent JJ cord-002530-ao7kenbx 102 13 from from IN cord-002530-ao7kenbx 102 14 the the DT cord-002530-ao7kenbx 102 15 mapped map VBN cord-002530-ao7kenbx 102 16 reads read VBZ cord-002530-ao7kenbx 102 17 in in IN cord-002530-ao7kenbx 102 18 all all DT cord-002530-ao7kenbx 102 19 six six CD cord-002530-ao7kenbx 102 20 samples sample NNS cord-002530-ao7kenbx 102 21 and and CC cord-002530-ao7kenbx 102 22 reads read VBZ cord-002530-ao7kenbx 102 23 corresponding correspond VBG cord-002530-ao7kenbx 102 24 to to IN cord-002530-ao7kenbx 102 25 the the DT cord-002530-ao7kenbx 102 26 splice splice NN cord-002530-ao7kenbx 102 27 junctions junction NNS cord-002530-ao7kenbx 102 28 were be VBD cord-002530-ao7kenbx 102 29 consistent consistent JJ cord-002530-ao7kenbx 102 30 with with IN cord-002530-ao7kenbx 102 31 previous previous JJ cord-002530-ao7kenbx 102 32 data datum NNS cord-002530-ao7kenbx 102 33 for for IN cord-002530-ao7kenbx 102 34 the the DT cord-002530-ao7kenbx 102 35 region region NN cord-002530-ao7kenbx 102 36 , , , cord-002530-ao7kenbx 102 37 indicating indicate VBG cord-002530-ao7kenbx 102 38 splicing splice VBG cord-002530-ao7kenbx 102 39 between between IN cord-002530-ao7kenbx 102 40 shared shared JJ cord-002530-ao7kenbx 102 41 exons exon NNS cord-002530-ao7kenbx 102 42 one one CD cord-002530-ao7kenbx 102 43 to to IN cord-002530-ao7kenbx 102 44 three three CD cord-002530-ao7kenbx 102 45 and and CC cord-002530-ao7kenbx 102 46 splicing splicing NN cord-002530-ao7kenbx 102 47 between between IN cord-002530-ao7kenbx 102 48 exon exon NN cord-002530-ao7kenbx 102 49 three three CD cord-002530-ao7kenbx 102 50 and and CC cord-002530-ao7kenbx 102 51 four four CD cord-002530-ao7kenbx 102 52 , , , cord-002530-ao7kenbx 102 53 resulting result VBG cord-002530-ao7kenbx 102 54 in in IN cord-002530-ao7kenbx 102 55 IE1 IE1 NNP cord-002530-ao7kenbx 102 56 transcript transcript NN cord-002530-ao7kenbx 102 57 , , , cord-002530-ao7kenbx 102 58 and and CC cord-002530-ao7kenbx 102 59 three three CD cord-002530-ao7kenbx 102 60 and and CC cord-002530-ao7kenbx 102 61 five five CD cord-002530-ao7kenbx 102 62 resulting result VBG cord-002530-ao7kenbx 102 63 in in IN cord-002530-ao7kenbx 102 64 IE2 ie2 NN cord-002530-ao7kenbx 102 65 transcript transcript NN cord-002530-ao7kenbx 102 66 ( ( -LRB- cord-002530-ao7kenbx 102 67 S3 S3 NNP cord-002530-ao7kenbx 102 68 Fig Fig NNP cord-002530-ao7kenbx 102 69 ) ) -RRB- cord-002530-ao7kenbx 102 70 . . . cord-002530-ao7kenbx 103 1 Consistent consistent JJ cord-002530-ao7kenbx 103 2 with with IN cord-002530-ao7kenbx 103 3 the the DT cord-002530-ao7kenbx 103 4 Northern northern JJ cord-002530-ao7kenbx 103 5 blot blot NN cord-002530-ao7kenbx 103 6 and and CC cord-002530-ao7kenbx 103 7 qRT qRT NNP cord-002530-ao7kenbx 103 8 - - HYPH cord-002530-ao7kenbx 103 9 PCR PCR NNP cord-002530-ao7kenbx 103 10 data datum NNS cord-002530-ao7kenbx 103 11 , , , cord-002530-ao7kenbx 103 12 MIE MIE NNP cord-002530-ao7kenbx 103 13 transcription transcription NN cord-002530-ao7kenbx 103 14 increased increase VBD cord-002530-ao7kenbx 103 15 at at IN cord-002530-ao7kenbx 103 16 24 24 CD cord-002530-ao7kenbx 103 17 HPI HPI NNP cord-002530-ao7kenbx 103 18 but but CC cord-002530-ao7kenbx 103 19 decreased decrease VBD cord-002530-ao7kenbx 103 20 at at IN cord-002530-ao7kenbx 103 21 48 48 CD cord-002530-ao7kenbx 103 22 and and CC cord-002530-ao7kenbx 103 23 72 72 CD cord-002530-ao7kenbx 103 24 HPI HPI NNP cord-002530-ao7kenbx 103 25 following follow VBG cord-002530-ao7kenbx 103 26 knockdown knockdown NN cord-002530-ao7kenbx 103 27 of of IN cord-002530-ao7kenbx 103 28 VCP VCP NNP cord-002530-ao7kenbx 103 29 ( ( -LRB- cord-002530-ao7kenbx 103 30 S4 S4 NNP cord-002530-ao7kenbx 103 31 Fig Fig NNP cord-002530-ao7kenbx 103 32 ) ) -RRB- cord-002530-ao7kenbx 103 33 . . . cord-002530-ao7kenbx 104 1 Furthermore furthermore RB cord-002530-ao7kenbx 104 2 , , , cord-002530-ao7kenbx 104 3 splicing splicing NN cord-002530-ao7kenbx 104 4 of of IN cord-002530-ao7kenbx 104 5 the the DT cord-002530-ao7kenbx 104 6 MIE MIE NNP cord-002530-ao7kenbx 104 7 primary primary JJ cord-002530-ao7kenbx 104 8 transcript transcript NN cord-002530-ao7kenbx 104 9 is be VBZ cord-002530-ao7kenbx 104 10 heavily heavily RB cord-002530-ao7kenbx 104 11 biased biased JJ cord-002530-ao7kenbx 104 12 towards towards IN cord-002530-ao7kenbx 104 13 IE1 ie1 NN cord-002530-ao7kenbx 104 14 at at IN cord-002530-ao7kenbx 104 15 24 24 CD cord-002530-ao7kenbx 104 16 hours hour NNS cord-002530-ao7kenbx 104 17 , , , cord-002530-ao7kenbx 104 18 with with IN cord-002530-ao7kenbx 104 19 IE2 ie2 NN cord-002530-ao7kenbx 104 20 splicing splicing NN cord-002530-ao7kenbx 104 21 increasing increase VBG cord-002530-ao7kenbx 104 22 as as IN cord-002530-ao7kenbx 104 23 the the DT cord-002530-ao7kenbx 104 24 infection infection NN cord-002530-ao7kenbx 104 25 progresses progress VBZ cord-002530-ao7kenbx 104 26 ( ( -LRB- cord-002530-ao7kenbx 104 27 S4A S4A NNP cord-002530-ao7kenbx 104 28 Fig Fig NNP cord-002530-ao7kenbx 104 29 ) ) -RRB- cord-002530-ao7kenbx 104 30 . . . cord-002530-ao7kenbx 105 1 To to TO cord-002530-ao7kenbx 105 2 determine determine VB cord-002530-ao7kenbx 105 3 whether whether IN cord-002530-ao7kenbx 105 4 knockdown knockdown NN cord-002530-ao7kenbx 105 5 of of IN cord-002530-ao7kenbx 105 6 VCP VCP NNP cord-002530-ao7kenbx 105 7 alters alter VBZ cord-002530-ao7kenbx 105 8 the the DT cord-002530-ao7kenbx 105 9 balance balance NN cord-002530-ao7kenbx 105 10 of of IN cord-002530-ao7kenbx 105 11 splicing splicing NN cord-002530-ao7kenbx 105 12 between between IN cord-002530-ao7kenbx 105 13 IE1 ie1 NN cord-002530-ao7kenbx 105 14 and and CC cord-002530-ao7kenbx 105 15 IE2 ie2 NN cord-002530-ao7kenbx 105 16 , , , cord-002530-ao7kenbx 105 17 the the DT cord-002530-ao7kenbx 105 18 proportion proportion NN cord-002530-ao7kenbx 105 19 of of IN cord-002530-ao7kenbx 105 20 total total JJ cord-002530-ao7kenbx 105 21 reads read NNS cord-002530-ao7kenbx 105 22 mapping mapping NN cord-002530-ao7kenbx 105 23 to to IN cord-002530-ao7kenbx 105 24 the the DT cord-002530-ao7kenbx 105 25 five five CD cord-002530-ao7kenbx 105 26 exons exon NNS cord-002530-ao7kenbx 105 27 of of IN cord-002530-ao7kenbx 105 28 the the DT cord-002530-ao7kenbx 105 29 IE IE NNP cord-002530-ao7kenbx 105 30 region region NN cord-002530-ao7kenbx 105 31 were be VBD cord-002530-ao7kenbx 105 32 calculated calculate VBN cord-002530-ao7kenbx 105 33 ( ( -LRB- cord-002530-ao7kenbx 105 34 S2 S2 NNP cord-002530-ao7kenbx 105 35 Table Table NNP cord-002530-ao7kenbx 105 36 ) ) -RRB- cord-002530-ao7kenbx 105 37 . . . cord-002530-ao7kenbx 106 1 Fig Fig NNP cord-002530-ao7kenbx 106 2 6A 6a CD cord-002530-ao7kenbx 106 3 repre repre IN cord-002530-ao7kenbx 106 4 sents sents NNP cord-002530-ao7kenbx 107 1 the the DT cord-002530-ao7kenbx 107 2 absolute absolute JJ cord-002530-ao7kenbx 107 3 difference difference NN cord-002530-ao7kenbx 107 4 in in IN cord-002530-ao7kenbx 107 5 exon exon NN cord-002530-ao7kenbx 107 6 frequencies frequency NNS cord-002530-ao7kenbx 107 7 from from IN cord-002530-ao7kenbx 107 8 VCP VCP NNP cord-002530-ao7kenbx 107 9 knockdown knockdown NN cord-002530-ao7kenbx 107 10 samples sample NNS cord-002530-ao7kenbx 107 11 compared compare VBN cord-002530-ao7kenbx 107 12 to to IN cord-002530-ao7kenbx 107 13 negative negative JJ cord-002530-ao7kenbx 107 14 control control NN cord-002530-ao7kenbx 107 15 samples sample NNS cord-002530-ao7kenbx 107 16 . . . cord-002530-ao7kenbx 108 1 At at IN cord-002530-ao7kenbx 108 2 24 24 CD cord-002530-ao7kenbx 108 3 HPI HPI NNP cord-002530-ao7kenbx 108 4 , , , cord-002530-ao7kenbx 108 5 knockdown knockdown NN cord-002530-ao7kenbx 108 6 of of IN cord-002530-ao7kenbx 108 7 VCP VCP NNP cord-002530-ao7kenbx 108 8 has have VBZ cord-002530-ao7kenbx 108 9 no no DT cord-002530-ao7kenbx 108 10 effect effect NN cord-002530-ao7kenbx 108 11 on on IN cord-002530-ao7kenbx 108 12 the the DT cord-002530-ao7kenbx 108 13 relative relative JJ cord-002530-ao7kenbx 108 14 proportion proportion NN cord-002530-ao7kenbx 108 15 of of IN cord-002530-ao7kenbx 108 16 reads read VBZ cord-002530-ao7kenbx 108 17 mapping mapping NN cord-002530-ao7kenbx 108 18 to to TO cord-002530-ao7kenbx 108 19 exon exon VB cord-002530-ao7kenbx 108 20 four four CD cord-002530-ao7kenbx 108 21 and and CC cord-002530-ao7kenbx 108 22 five five CD cord-002530-ao7kenbx 108 23 . . . cord-002530-ao7kenbx 109 1 However however RB cord-002530-ao7kenbx 109 2 , , , cord-002530-ao7kenbx 109 3 by by IN cord-002530-ao7kenbx 109 4 48 48 CD cord-002530-ao7kenbx 109 5 HPI HPI NNP cord-002530-ao7kenbx 109 6 there there EX cord-002530-ao7kenbx 109 7 is be VBZ cord-002530-ao7kenbx 109 8 a a DT cord-002530-ao7kenbx 109 9 clear clear JJ cord-002530-ao7kenbx 109 10 increase increase NN cord-002530-ao7kenbx 109 11 in in IN cord-002530-ao7kenbx 109 12 the the DT cord-002530-ao7kenbx 109 13 relative relative JJ cord-002530-ao7kenbx 109 14 proportion proportion NN cord-002530-ao7kenbx 109 15 of of IN cord-002530-ao7kenbx 109 16 reads read VBZ cord-002530-ao7kenbx 109 17 mapping mapping NN cord-002530-ao7kenbx 109 18 to to TO cord-002530-ao7kenbx 109 19 exon exon VB cord-002530-ao7kenbx 109 20 four four CD cord-002530-ao7kenbx 109 21 in in IN cord-002530-ao7kenbx 109 22 VCP VCP NNP cord-002530-ao7kenbx 109 23 knockdown knockdown NN cord-002530-ao7kenbx 109 24 samples sample NNS cord-002530-ao7kenbx 109 25 , , , cord-002530-ao7kenbx 109 26 with with IN cord-002530-ao7kenbx 109 27 a a DT cord-002530-ao7kenbx 109 28 corresponding correspond VBG cord-002530-ao7kenbx 109 29 decrease decrease NN cord-002530-ao7kenbx 109 30 in in IN cord-002530-ao7kenbx 109 31 exon exon NN cord-002530-ao7kenbx 109 32 five five CD cord-002530-ao7kenbx 109 33 read read NN cord-002530-ao7kenbx 109 34 frequencies frequency NNS cord-002530-ao7kenbx 109 35 . . . cord-002530-ao7kenbx 110 1 In in IN cord-002530-ao7kenbx 110 2 contrast contrast NN cord-002530-ao7kenbx 110 3 knockdown knockdown NN cord-002530-ao7kenbx 110 4 of of IN cord-002530-ao7kenbx 110 5 VCP VCP NNP cord-002530-ao7kenbx 110 6 has have VBZ cord-002530-ao7kenbx 110 7 no no DT cord-002530-ao7kenbx 110 8 effect effect NN cord-002530-ao7kenbx 110 9 on on IN cord-002530-ao7kenbx 110 10 the the DT cord-002530-ao7kenbx 110 11 relative relative JJ cord-002530-ao7kenbx 110 12 proportion proportion NN cord-002530-ao7kenbx 110 13 of of IN cord-002530-ao7kenbx 110 14 reads read NNS cord-002530-ao7kenbx 110 15 mapping mapping NN cord-002530-ao7kenbx 110 16 to to IN cord-002530-ao7kenbx 110 17 the the DT cord-002530-ao7kenbx 110 18 shared share VBN cord-002530-ao7kenbx 110 19 exons exon NNS cord-002530-ao7kenbx 110 20 , , , cord-002530-ao7kenbx 110 21 indicating indicate VBG cord-002530-ao7kenbx 110 22 reduced reduce VBN cord-002530-ao7kenbx 110 23 splicing splicing NN cord-002530-ao7kenbx 110 24 from from IN cord-002530-ao7kenbx 110 25 exon exon NN cord-002530-ao7kenbx 110 26 three three CD cord-002530-ao7kenbx 110 27 to to TO cord-002530-ao7kenbx 110 28 five five CD cord-002530-ao7kenbx 110 29 ( ( -LRB- cord-002530-ao7kenbx 110 30 IE2 ie2 NN cord-002530-ao7kenbx 110 31 ) ) -RRB- cord-002530-ao7kenbx 110 32 and and CC cord-002530-ao7kenbx 110 33 a a DT cord-002530-ao7kenbx 110 34 corresponding corresponding JJ cord-002530-ao7kenbx 110 35 increase increase NN cord-002530-ao7kenbx 110 36 in in IN cord-002530-ao7kenbx 110 37 splicing splicing NN cord-002530-ao7kenbx 110 38 from from IN cord-002530-ao7kenbx 110 39 exon exon NN cord-002530-ao7kenbx 110 40 three three CD cord-002530-ao7kenbx 110 41 to to IN cord-002530-ao7kenbx 110 42 four four CD cord-002530-ao7kenbx 110 43 ( ( -LRB- cord-002530-ao7kenbx 110 44 IE1 ie1 NN cord-002530-ao7kenbx 110 45 ) ) -RRB- cord-002530-ao7kenbx 110 46 . . . cord-002530-ao7kenbx 111 1 Knockdown knockdown NN cord-002530-ao7kenbx 111 2 of of IN cord-002530-ao7kenbx 111 3 VCP VCP NNP cord-002530-ao7kenbx 111 4 also also RB cord-002530-ao7kenbx 111 5 resulted result VBD cord-002530-ao7kenbx 111 6 in in IN cord-002530-ao7kenbx 111 7 lower low JJR cord-002530-ao7kenbx 111 8 frequencies frequency NNS cord-002530-ao7kenbx 111 9 of of IN cord-002530-ao7kenbx 111 10 read read NN cord-002530-ao7kenbx 111 11 pairs pair NNS cord-002530-ao7kenbx 111 12 spanning span VBG cord-002530-ao7kenbx 111 13 exon exon NN cord-002530-ao7kenbx 111 14 three three CD cord-002530-ao7kenbx 111 15 to to TO cord-002530-ao7kenbx 111 16 five five CD cord-002530-ao7kenbx 111 17 splice splice NN cord-002530-ao7kenbx 111 18 junction junction NN cord-002530-ao7kenbx 111 19 ( ( -LRB- cord-002530-ao7kenbx 111 20 IE2 IE2 NNP cord-002530-ao7kenbx 111 21 ) ) -RRB- cord-002530-ao7kenbx 111 22 and and CC cord-002530-ao7kenbx 111 23 a a DT cord-002530-ao7kenbx 111 24 corresponding corresponding JJ cord-002530-ao7kenbx 111 25 increase increase NN cord-002530-ao7kenbx 111 26 in in IN cord-002530-ao7kenbx 111 27 read read NN cord-002530-ao7kenbx 111 28 pairs pair NNS cord-002530-ao7kenbx 111 29 spanning span VBG cord-002530-ao7kenbx 111 30 exon exon NN cord-002530-ao7kenbx 111 31 three three CD cord-002530-ao7kenbx 111 32 to to TO cord-002530-ao7kenbx 111 33 four four CD cord-002530-ao7kenbx 111 34 splice splice NN cord-002530-ao7kenbx 111 35 junction junction NN cord-002530-ao7kenbx 111 36 ( ( -LRB- cord-002530-ao7kenbx 111 37 IE1 ie1 NN cord-002530-ao7kenbx 111 38 ) ) -RRB- cord-002530-ao7kenbx 112 1 ( ( -LRB- cord-002530-ao7kenbx 112 2 Fig Fig NNP cord-002530-ao7kenbx 112 3 6A 6a CD cord-002530-ao7kenbx 112 4 and and CC cord-002530-ao7kenbx 112 5 6B 6b NN cord-002530-ao7kenbx 112 6 , , , cord-002530-ao7kenbx 112 7 S4B S4B NNP cord-002530-ao7kenbx 112 8 Fig Fig NNP cord-002530-ao7kenbx 112 9 and and CC cord-002530-ao7kenbx 112 10 S3 S3 NNP cord-002530-ao7kenbx 112 11 and and CC cord-002530-ao7kenbx 112 12 S4 S4 NNP cord-002530-ao7kenbx 112 13 Tables Tables NNP cord-002530-ao7kenbx 112 14 ) ) -RRB- cord-002530-ao7kenbx 112 15 . . . cord-002530-ao7kenbx 113 1 These these DT cord-002530-ao7kenbx 113 2 results result NNS cord-002530-ao7kenbx 113 3 show show VBP cord-002530-ao7kenbx 113 4 that that IN cord-002530-ao7kenbx 113 5 knockdown knockdown NN cord-002530-ao7kenbx 113 6 of of IN cord-002530-ao7kenbx 113 7 VCP VCP NNP cord-002530-ao7kenbx 113 8 alters alter VBZ cord-002530-ao7kenbx 113 9 splicing splicing NN cord-002530-ao7kenbx 113 10 of of IN cord-002530-ao7kenbx 113 11 MIE MIE NNP cord-002530-ao7kenbx 113 12 transcripts transcript NNS cord-002530-ao7kenbx 113 13 resulting result VBG cord-002530-ao7kenbx 113 14 in in IN cord-002530-ao7kenbx 113 15 a a DT cord-002530-ao7kenbx 113 16 failure failure NN cord-002530-ao7kenbx 113 17 to to TO cord-002530-ao7kenbx 113 18 switch switch VB cord-002530-ao7kenbx 113 19 from from IN cord-002530-ao7kenbx 113 20 IE1 ie1 NN cord-002530-ao7kenbx 113 21 splicing splice VBG cord-002530-ao7kenbx 113 22 to to IN cord-002530-ao7kenbx 113 23 IE2 ie2 JJ cord-002530-ao7kenbx 113 24 splicing splicing NN cord-002530-ao7kenbx 113 25 . . . cord-002530-ao7kenbx 114 1 To to TO cord-002530-ao7kenbx 114 2 determine determine VB cord-002530-ao7kenbx 114 3 whether whether IN cord-002530-ao7kenbx 114 4 knockdown knockdown NN cord-002530-ao7kenbx 114 5 of of IN cord-002530-ao7kenbx 114 6 VCP VCP NNP cord-002530-ao7kenbx 114 7 resulted result VBD cord-002530-ao7kenbx 114 8 in in IN cord-002530-ao7kenbx 114 9 more more RBR cord-002530-ao7kenbx 114 10 generalized generalized JJ cord-002530-ao7kenbx 114 11 effects effect NNS cord-002530-ao7kenbx 114 12 on on IN cord-002530-ao7kenbx 114 13 virus virus NN cord-002530-ao7kenbx 114 14 transcript transcript NN cord-002530-ao7kenbx 114 15 splicing splicing NN cord-002530-ao7kenbx 114 16 , , , cord-002530-ao7kenbx 114 17 we -PRON- PRP cord-002530-ao7kenbx 114 18 analysed analyse VBD cord-002530-ao7kenbx 114 19 read read VBD cord-002530-ao7kenbx 114 20 counts count VBZ cord-002530-ao7kenbx 114 21 for for IN cord-002530-ao7kenbx 114 22 other other JJ cord-002530-ao7kenbx 114 23 well well RB cord-002530-ao7kenbx 114 24 - - HYPH cord-002530-ao7kenbx 114 25 characterized characterize VBN cord-002530-ao7kenbx 114 26 HCMV HCMV NNP cord-002530-ao7kenbx 114 27 spliced splice VBN cord-002530-ao7kenbx 114 28 transcripts transcript NNS cord-002530-ao7kenbx 114 29 ( ( -LRB- cord-002530-ao7kenbx 114 30 S5 S5 NNP cord-002530-ao7kenbx 114 31 Fig Fig NNP cord-002530-ao7kenbx 114 32 ) ) -RRB- cord-002530-ao7kenbx 114 33 . . . cord-002530-ao7kenbx 115 1 Based base VBN cord-002530-ao7kenbx 115 2 on on IN cord-002530-ao7kenbx 115 3 exon exon NN cord-002530-ao7kenbx 115 4 counts count NNS cord-002530-ao7kenbx 115 5 , , , cord-002530-ao7kenbx 115 6 only only RB cord-002530-ao7kenbx 115 7 UL37 UL37 NNP cord-002530-ao7kenbx 115 8 showed show VBD cord-002530-ao7kenbx 115 9 a a DT cord-002530-ao7kenbx 115 10 similar similar JJ cord-002530-ao7kenbx 115 11 pattern pattern NN cord-002530-ao7kenbx 115 12 to to IN cord-002530-ao7kenbx 115 13 MIE MIE NNP cord-002530-ao7kenbx 115 14 transcripts transcript NNS cord-002530-ao7kenbx 115 15 in in IN cord-002530-ao7kenbx 115 16 response response NN cord-002530-ao7kenbx 115 17 to to IN cord-002530-ao7kenbx 115 18 VCP VCP NNP cord-002530-ao7kenbx 115 19 knockdown knockdown NN cord-002530-ao7kenbx 115 20 where where WRB cord-002530-ao7kenbx 115 21 absolute absolute JJ cord-002530-ao7kenbx 115 22 exon exon NN cord-002530-ao7kenbx 115 23 frequencies frequency NNS cord-002530-ao7kenbx 115 24 for for IN cord-002530-ao7kenbx 115 25 UL37 UL37 NNP cord-002530-ao7kenbx 115 26 exon exon NN cord-002530-ao7kenbx 115 27 1 1 CD cord-002530-ao7kenbx 115 28 increased increase VBD cord-002530-ao7kenbx 115 29 with with IN cord-002530-ao7kenbx 115 30 a a DT cord-002530-ao7kenbx 115 31 corresponding corresponding JJ cord-002530-ao7kenbx 115 32 decrease decrease NN cord-002530-ao7kenbx 115 33 in in IN cord-002530-ao7kenbx 115 34 exon exon NN cord-002530-ao7kenbx 115 35 3 3 CD cord-002530-ao7kenbx 115 36 read read NN cord-002530-ao7kenbx 115 37 frequencies frequency NNS cord-002530-ao7kenbx 115 38 . . . cord-002530-ao7kenbx 116 1 However however RB cord-002530-ao7kenbx 116 2 , , , cord-002530-ao7kenbx 116 3 unlike unlike IN cord-002530-ao7kenbx 116 4 the the DT cord-002530-ao7kenbx 116 5 MIE MIE NNP cord-002530-ao7kenbx 116 6 transcripts transcript NNS cord-002530-ao7kenbx 116 7 , , , cord-002530-ao7kenbx 116 8 analysis analysis NN cord-002530-ao7kenbx 116 9 of of IN cord-002530-ao7kenbx 116 10 paired pair VBN cord-002530-ao7kenbx 116 11 - - HYPH cord-002530-ao7kenbx 116 12 end end NN cord-002530-ao7kenbx 116 13 reads read NNS cord-002530-ao7kenbx 116 14 did do VBD cord-002530-ao7kenbx 116 15 not not RB cord-002530-ao7kenbx 116 16 support support VB cord-002530-ao7kenbx 116 17 substantial substantial JJ cord-002530-ao7kenbx 116 18 splicing splicing NN cord-002530-ao7kenbx 116 19 between between IN cord-002530-ao7kenbx 116 20 UL37 UL37 NNP cord-002530-ao7kenbx 116 21 exon exon NN cord-002530-ao7kenbx 116 22 1 1 CD cord-002530-ao7kenbx 116 23 to to IN cord-002530-ao7kenbx 116 24 exons exon NNS cord-002530-ao7kenbx 116 25 2 2 CD cord-002530-ao7kenbx 116 26 and and CC cord-002530-ao7kenbx 116 27 3 3 CD cord-002530-ao7kenbx 116 28 ( ( -LRB- cord-002530-ao7kenbx 116 29 S3 S3 NNP cord-002530-ao7kenbx 116 30 Fig Fig NNP cord-002530-ao7kenbx 116 31 ) ) -RRB- cord-002530-ao7kenbx 116 32 . . . cord-002530-ao7kenbx 117 1 Instead instead RB cord-002530-ao7kenbx 117 2 , , , cord-002530-ao7kenbx 117 3 exon exon NN cord-002530-ao7kenbx 117 4 1 1 CD cord-002530-ao7kenbx 117 5 and and CC cord-002530-ao7kenbx 117 6 exons exon NNS cord-002530-ao7kenbx 117 7 2 2 CD cord-002530-ao7kenbx 117 8 and and CC cord-002530-ao7kenbx 117 9 3 3 CD cord-002530-ao7kenbx 117 10 of of IN cord-002530-ao7kenbx 117 11 UL37 UL37 NNP cord-002530-ao7kenbx 117 12 are be VBP cord-002530-ao7kenbx 117 13 likely likely JJ cord-002530-ao7kenbx 117 14 to to TO cord-002530-ao7kenbx 117 15 be be VB cord-002530-ao7kenbx 117 16 predominantly predominantly RB cord-002530-ao7kenbx 117 17 independent independent JJ cord-002530-ao7kenbx 117 18 transcriptional transcriptional JJ cord-002530-ao7kenbx 117 19 units unit NNS cord-002530-ao7kenbx 117 20 with with IN cord-002530-ao7kenbx 117 21 differing differ VBG cord-002530-ao7kenbx 117 22 kinetics kinetic NNS cord-002530-ao7kenbx 117 23 , , , cord-002530-ao7kenbx 117 24 with with IN cord-002530-ao7kenbx 117 25 exon exon NN cord-002530-ao7kenbx 117 26 2 2 CD cord-002530-ao7kenbx 117 27 and and CC cord-002530-ao7kenbx 117 28 3 3 CD cord-002530-ao7kenbx 117 29 requiring require VBG cord-002530-ao7kenbx 117 30 IE2 ie2 JJ cord-002530-ao7kenbx 117 31 expression expression NN cord-002530-ao7kenbx 117 32 for for IN cord-002530-ao7kenbx 117 33 transactivation transactivation NN cord-002530-ao7kenbx 117 34 . . . cord-002530-ao7kenbx 118 1 To to TO cord-002530-ao7kenbx 118 2 determine determine VB cord-002530-ao7kenbx 118 3 the the DT cord-002530-ao7kenbx 118 4 effect effect NN cord-002530-ao7kenbx 118 5 of of IN cord-002530-ao7kenbx 118 6 VCP VCP NNP cord-002530-ao7kenbx 118 7 knockdown knockdown NN cord-002530-ao7kenbx 118 8 on on IN cord-002530-ao7kenbx 118 9 global global JJ cord-002530-ao7kenbx 118 10 viral viral JJ cord-002530-ao7kenbx 118 11 gene gene NN cord-002530-ao7kenbx 118 12 expression expression NN cord-002530-ao7kenbx 118 13 , , , cord-002530-ao7kenbx 118 14 read read VB cord-002530-ao7kenbx 118 15 counts count NNS cord-002530-ao7kenbx 118 16 were be VBD cord-002530-ao7kenbx 118 17 mapped map VBN cord-002530-ao7kenbx 118 18 to to IN cord-002530-ao7kenbx 118 19 the the DT cord-002530-ao7kenbx 118 20 entire entire JJ cord-002530-ao7kenbx 118 21 viral viral JJ cord-002530-ao7kenbx 118 22 genome genome NN cord-002530-ao7kenbx 118 23 . . . cord-002530-ao7kenbx 119 1 As as IN cord-002530-ao7kenbx 119 2 shown show VBN cord-002530-ao7kenbx 119 3 in in IN cord-002530-ao7kenbx 119 4 Supplemental Supplemental NNP cord-002530-ao7kenbx 119 5 Fig Fig NNP cord-002530-ao7kenbx 119 6 6 6 CD cord-002530-ao7kenbx 119 7 total total JJ cord-002530-ao7kenbx 119 8 read read NN cord-002530-ao7kenbx 119 9 counts count VBZ cord-002530-ao7kenbx 119 10 mapping mapping NN cord-002530-ao7kenbx 119 11 to to IN cord-002530-ao7kenbx 119 12 the the DT cord-002530-ao7kenbx 119 13 viral viral JJ cord-002530-ao7kenbx 119 14 genome genome NN cord-002530-ao7kenbx 119 15 were be VBD cord-002530-ao7kenbx 119 16 relatively relatively RB cord-002530-ao7kenbx 119 17 similar similar JJ cord-002530-ao7kenbx 119 18 at at IN cord-002530-ao7kenbx 119 19 24 24 CD cord-002530-ao7kenbx 119 20 HPI HPI NNP cord-002530-ao7kenbx 119 21 . . . cord-002530-ao7kenbx 120 1 However however RB cord-002530-ao7kenbx 120 2 , , , cord-002530-ao7kenbx 120 3 while while IN cord-002530-ao7kenbx 120 4 viral viral JJ cord-002530-ao7kenbx 120 5 gene gene NN cord-002530-ao7kenbx 120 6 expression expression NN cord-002530-ao7kenbx 120 7 increased increase VBD cord-002530-ao7kenbx 120 8 in in IN cord-002530-ao7kenbx 120 9 control control NN cord-002530-ao7kenbx 120 10 cells cell NNS cord-002530-ao7kenbx 120 11 by by IN cord-002530-ao7kenbx 120 12 approximately approximately RB cord-002530-ao7kenbx 120 13 6.5 6.5 CD cord-002530-ao7kenbx 120 14 fold fold NN cord-002530-ao7kenbx 120 15 between between IN cord-002530-ao7kenbx 120 16 24 24 CD cord-002530-ao7kenbx 120 17 and and CC cord-002530-ao7kenbx 120 18 72 72 CD cord-002530-ao7kenbx 120 19 HPI HPI NNP cord-002530-ao7kenbx 120 20 , , , cord-002530-ao7kenbx 120 21 expression expression NN cord-002530-ao7kenbx 120 22 in in IN cord-002530-ao7kenbx 120 23 VCP VCP NNP cord-002530-ao7kenbx 120 24 knockdown knockdown NN cord-002530-ao7kenbx 120 25 cells cell NNS cord-002530-ao7kenbx 120 26 only only RB cord-002530-ao7kenbx 120 27 increased increase VBD cord-002530-ao7kenbx 120 28 by by IN cord-002530-ao7kenbx 120 29 3-fold 3-fold CD cord-002530-ao7kenbx 120 30 , , , cord-002530-ao7kenbx 120 31 indicating indicate VBG cord-002530-ao7kenbx 120 32 a a DT cord-002530-ao7kenbx 120 33 general general JJ cord-002530-ao7kenbx 120 34 reduction reduction NN cord-002530-ao7kenbx 120 35 in in IN cord-002530-ao7kenbx 120 36 viral viral JJ cord-002530-ao7kenbx 120 37 gene gene NN cord-002530-ao7kenbx 120 38 expression expression NN cord-002530-ao7kenbx 120 39 following follow VBG cord-002530-ao7kenbx 120 40 VCP VCP NNP cord-002530-ao7kenbx 120 41 knockdown knockdown NN cord-002530-ao7kenbx 120 42 . . . cord-002530-ao7kenbx 121 1 This this DT cord-002530-ao7kenbx 121 2 is be VBZ cord-002530-ao7kenbx 121 3 unsurprising unsurprising JJ cord-002530-ao7kenbx 121 4 given give VBN cord-002530-ao7kenbx 121 5 the the DT cord-002530-ao7kenbx 121 6 vital vital JJ cord-002530-ao7kenbx 121 7 role role NN cord-002530-ao7kenbx 121 8 IE2 ie2 NN cord-002530-ao7kenbx 121 9 protein protein NN cord-002530-ao7kenbx 121 10 plays play VBZ cord-002530-ao7kenbx 121 11 in in IN cord-002530-ao7kenbx 121 12 transactivation transactivation NN cord-002530-ao7kenbx 121 13 of of IN cord-002530-ao7kenbx 121 14 viral viral JJ cord-002530-ao7kenbx 121 15 gene gene NN cord-002530-ao7kenbx 121 16 expression expression NN cord-002530-ao7kenbx 121 17 . . . cord-002530-ao7kenbx 122 1 To to TO cord-002530-ao7kenbx 122 2 determine determine VB cord-002530-ao7kenbx 122 3 whether whether IN cord-002530-ao7kenbx 122 4 knockdown knockdown NN cord-002530-ao7kenbx 122 5 of of IN cord-002530-ao7kenbx 122 6 VCP VCP NNP cord-002530-ao7kenbx 122 7 results result NNS cord-002530-ao7kenbx 122 8 in in IN cord-002530-ao7kenbx 122 9 a a DT cord-002530-ao7kenbx 122 10 similar similar JJ cord-002530-ao7kenbx 122 11 effect effect NN cord-002530-ao7kenbx 122 12 on on IN cord-002530-ao7kenbx 122 13 all all DT cord-002530-ao7kenbx 122 14 viral viral JJ cord-002530-ao7kenbx 122 15 genes gene NNS cord-002530-ao7kenbx 122 16 or or CC cord-002530-ao7kenbx 122 17 differential differential JJ cord-002530-ao7kenbx 122 18 effects effect NNS cord-002530-ao7kenbx 122 19 , , , cord-002530-ao7kenbx 122 20 total total JJ cord-002530-ao7kenbx 122 21 reads read NNS cord-002530-ao7kenbx 122 22 were be VBD cord-002530-ao7kenbx 122 23 mapped map VBN cord-002530-ao7kenbx 122 24 to to IN cord-002530-ao7kenbx 122 25 individual individual JJ cord-002530-ao7kenbx 122 26 viral viral JJ cord-002530-ao7kenbx 122 27 open open JJ cord-002530-ao7kenbx 122 28 reading reading NN cord-002530-ao7kenbx 122 29 frames frame NNS cord-002530-ao7kenbx 122 30 and and CC cord-002530-ao7kenbx 122 31 viral viral JJ cord-002530-ao7kenbx 122 32 gene gene NN cord-002530-ao7kenbx 122 33 expression expression NN cord-002530-ao7kenbx 122 34 compared compare VBN cord-002530-ao7kenbx 122 35 between between IN cord-002530-ao7kenbx 122 36 control control NN cord-002530-ao7kenbx 122 37 cells cell NNS cord-002530-ao7kenbx 122 38 and and CC cord-002530-ao7kenbx 122 39 VCP VCP NNP cord-002530-ao7kenbx 122 40 knockdown knockdown NN cord-002530-ao7kenbx 122 41 cells cell NNS cord-002530-ao7kenbx 122 42 ( ( -LRB- cord-002530-ao7kenbx 122 43 Fig Fig NNP cord-002530-ao7kenbx 122 44 7 7 CD cord-002530-ao7kenbx 122 45 and and CC cord-002530-ao7kenbx 122 46 S5 S5 NNP cord-002530-ao7kenbx 122 47 _SP cord-002530-ao7kenbx 122 48 Table Table NNP cord-002530-ao7kenbx 122 49 ) ) -RRB- cord-002530-ao7kenbx 122 50 . . . cord-002530-ao7kenbx 123 1 At at IN cord-002530-ao7kenbx 123 2 24 24 CD cord-002530-ao7kenbx 123 3 HPI HPI NNP cord-002530-ao7kenbx 123 4 moderate moderate JJ cord-002530-ao7kenbx 123 5 reductions reduction NNS cord-002530-ao7kenbx 123 6 in in IN cord-002530-ao7kenbx 123 7 viral viral JJ cord-002530-ao7kenbx 123 8 gene gene NN cord-002530-ao7kenbx 123 9 expression expression NN cord-002530-ao7kenbx 123 10 can can MD cord-002530-ao7kenbx 123 11 be be VB cord-002530-ao7kenbx 123 12 observed observe VBN cord-002530-ao7kenbx 123 13 , , , cord-002530-ao7kenbx 123 14 with with IN cord-002530-ao7kenbx 123 15 a a DT cord-002530-ao7kenbx 123 16 subset subset NN cord-002530-ao7kenbx 123 17 of of IN cord-002530-ao7kenbx 123 18 transcripts transcript NNS cord-002530-ao7kenbx 123 19 expressed express VBN cord-002530-ao7kenbx 123 20 at at IN cord-002530-ao7kenbx 123 21 relatively relatively RB cord-002530-ao7kenbx 123 22 higher high JJR cord-002530-ao7kenbx 123 23 levels level NNS cord-002530-ao7kenbx 123 24 following follow VBG cord-002530-ao7kenbx 123 25 VCP VCP NNP cord-002530-ao7kenbx 123 26 knockdown knockdown NN cord-002530-ao7kenbx 123 27 . . . cord-002530-ao7kenbx 124 1 In in IN cord-002530-ao7kenbx 124 2 particular particular JJ cord-002530-ao7kenbx 124 3 , , , cord-002530-ao7kenbx 124 4 The the DT cord-002530-ao7kenbx 124 5 proportion proportion NN cord-002530-ao7kenbx 124 6 of of IN cord-002530-ao7kenbx 124 7 total total JJ cord-002530-ao7kenbx 124 8 reads read NNS cord-002530-ao7kenbx 124 9 mapping mapping NN cord-002530-ao7kenbx 124 10 to to IN cord-002530-ao7kenbx 124 11 each each DT cord-002530-ao7kenbx 124 12 of of IN cord-002530-ao7kenbx 124 13 the the DT cord-002530-ao7kenbx 124 14 five five CD cord-002530-ao7kenbx 124 15 exons exon NNS cord-002530-ao7kenbx 124 16 was be VBD cord-002530-ao7kenbx 124 17 calculated calculate VBN cord-002530-ao7kenbx 124 18 , , , cord-002530-ao7kenbx 124 19 with with IN cord-002530-ao7kenbx 124 20 the the DT cord-002530-ao7kenbx 124 21 absolute absolute JJ cord-002530-ao7kenbx 124 22 difference difference NN cord-002530-ao7kenbx 124 23 in in IN cord-002530-ao7kenbx 124 24 these these DT cord-002530-ao7kenbx 124 25 values value NNS cord-002530-ao7kenbx 124 26 between between IN cord-002530-ao7kenbx 124 27 VCP VCP NNP cord-002530-ao7kenbx 124 28 knockdown knockdown NN cord-002530-ao7kenbx 124 29 and and CC cord-002530-ao7kenbx 124 30 corresponding corresponding JJ cord-002530-ao7kenbx 124 31 negative negative JJ cord-002530-ao7kenbx 124 32 control control NN cord-002530-ao7kenbx 124 33 shown show VBN cord-002530-ao7kenbx 124 34 ( ( -LRB- cord-002530-ao7kenbx 124 35 numbers number NNS cord-002530-ao7kenbx 124 36 within within IN cord-002530-ao7kenbx 124 37 exons exon NNS cord-002530-ao7kenbx 124 38 ) ) -RRB- cord-002530-ao7kenbx 124 39 . . . cord-002530-ao7kenbx 125 1 Knockdown knockdown NN cord-002530-ao7kenbx 125 2 of of IN cord-002530-ao7kenbx 125 3 VCP VCP NNP cord-002530-ao7kenbx 125 4 has have VBZ cord-002530-ao7kenbx 125 5 no no DT cord-002530-ao7kenbx 125 6 effect effect NN cord-002530-ao7kenbx 125 7 on on IN cord-002530-ao7kenbx 125 8 the the DT cord-002530-ao7kenbx 125 9 proportion proportion NN cord-002530-ao7kenbx 125 10 of of IN cord-002530-ao7kenbx 125 11 reads read NNS cord-002530-ao7kenbx 125 12 originating originate VBG cord-002530-ao7kenbx 125 13 from from IN cord-002530-ao7kenbx 125 14 exons exon NNS cord-002530-ao7kenbx 125 15 1 1 CD cord-002530-ao7kenbx 125 16 , , , cord-002530-ao7kenbx 125 17 2 2 CD cord-002530-ao7kenbx 125 18 or or CC cord-002530-ao7kenbx 125 19 3 3 CD cord-002530-ao7kenbx 125 20 , , , cord-002530-ao7kenbx 125 21 but but CC cord-002530-ao7kenbx 125 22 is be VBZ cord-002530-ao7kenbx 125 23 associated associate VBN cord-002530-ao7kenbx 125 24 with with IN cord-002530-ao7kenbx 125 25 a a DT cord-002530-ao7kenbx 125 26 greater great JJR cord-002530-ao7kenbx 125 27 proportion proportion NN cord-002530-ao7kenbx 125 28 of of IN cord-002530-ao7kenbx 125 29 reads read NNS cord-002530-ao7kenbx 125 30 derived derive VBN cord-002530-ao7kenbx 125 31 from from IN cord-002530-ao7kenbx 125 32 exon exon NN cord-002530-ao7kenbx 125 33 4 4 CD cord-002530-ao7kenbx 125 34 ( ( -LRB- cord-002530-ao7kenbx 125 35 IE1 ie1 NN cord-002530-ao7kenbx 125 36 ) ) -RRB- cord-002530-ao7kenbx 125 37 and and CC cord-002530-ao7kenbx 125 38 decreased decrease VBD cord-002530-ao7kenbx 125 39 numbers number NNS cord-002530-ao7kenbx 125 40 from from IN cord-002530-ao7kenbx 125 41 exon exon NN cord-002530-ao7kenbx 125 42 5 5 CD cord-002530-ao7kenbx 125 43 ( ( -LRB- cord-002530-ao7kenbx 125 44 IE2 IE2 NNP cord-002530-ao7kenbx 125 45 ) ) -RRB- cord-002530-ao7kenbx 125 46 . . . cord-002530-ao7kenbx 126 1 ( ( -LRB- cord-002530-ao7kenbx 126 2 B b NN cord-002530-ao7kenbx 126 3 ) ) -RRB- cord-002530-ao7kenbx 126 4 Log log VB cord-002530-ao7kenbx 126 5 2 2 CD cord-002530-ao7kenbx 126 6 ratios ratio NNS cord-002530-ao7kenbx 126 7 of of IN cord-002530-ao7kenbx 126 8 the the DT cord-002530-ao7kenbx 126 9 proportions proportion NNS cord-002530-ao7kenbx 126 10 of of IN cord-002530-ao7kenbx 126 11 reads read NNS cord-002530-ao7kenbx 126 12 mapping mapping NN cord-002530-ao7kenbx 126 13 to to TO cord-002530-ao7kenbx 126 14 exon exon VB cord-002530-ao7kenbx 126 15 3 3 CD cord-002530-ao7kenbx 126 16 whose whose WP$ cord-002530-ao7kenbx 126 17 matching matching JJ cord-002530-ao7kenbx 126 18 pair pair NN cord-002530-ao7kenbx 126 19 maps map NNS cord-002530-ao7kenbx 126 20 to to IN cord-002530-ao7kenbx 126 21 either either DT cord-002530-ao7kenbx 126 22 exons exon NNS cord-002530-ao7kenbx 126 23 2 2 CD cord-002530-ao7kenbx 126 24 , , , cord-002530-ao7kenbx 126 25 4 4 CD cord-002530-ao7kenbx 126 26 or or CC cord-002530-ao7kenbx 126 27 5 5 CD cord-002530-ao7kenbx 126 28 are be VBP cord-002530-ao7kenbx 126 29 shown show VBN cord-002530-ao7kenbx 126 30 . . . cord-002530-ao7kenbx 127 1 The the DT cord-002530-ao7kenbx 127 2 proportion proportion NN cord-002530-ao7kenbx 127 3 of of IN cord-002530-ao7kenbx 127 4 read read NN cord-002530-ao7kenbx 127 5 pairs pair NNS cord-002530-ao7kenbx 127 6 spanning span VBG cord-002530-ao7kenbx 127 7 the the DT cord-002530-ao7kenbx 127 8 shared share VBN cord-002530-ao7kenbx 127 9 splice splice NN cord-002530-ao7kenbx 127 10 junction junction NN cord-002530-ao7kenbx 127 11 between between IN cord-002530-ao7kenbx 127 12 exon exon NN cord-002530-ao7kenbx 127 13 two two CD cord-002530-ao7kenbx 127 14 and and CC cord-002530-ao7kenbx 127 15 three three CD cord-002530-ao7kenbx 127 16 is be VBZ cord-002530-ao7kenbx 127 17 unaffected unaffected JJ cord-002530-ao7kenbx 127 18 by by IN cord-002530-ao7kenbx 127 19 VCP VCP NNP cord-002530-ao7kenbx 127 20 knockdown knockdown NN cord-002530-ao7kenbx 127 21 , , , cord-002530-ao7kenbx 127 22 whereas whereas IN cord-002530-ao7kenbx 127 23 exon exon NNP cord-002530-ao7kenbx 127 24 3 3 CD cord-002530-ao7kenbx 127 25 to to IN cord-002530-ao7kenbx 127 26 4 4 CD cord-002530-ao7kenbx 127 27 frequency frequency NN cord-002530-ao7kenbx 127 28 increases increase NNS cord-002530-ao7kenbx 127 29 and and CC cord-002530-ao7kenbx 127 30 3 3 CD cord-002530-ao7kenbx 127 31 to to TO cord-002530-ao7kenbx 127 32 5 5 CD cord-002530-ao7kenbx 127 33 decreases decrease NNS cord-002530-ao7kenbx 127 34 . . . cord-002530-ao7kenbx 128 1 https://doi.org/10.1371/journal.ppat.1006329.g006 https://doi.org/10.1371/journal.ppat.1006329.g006 JJ cord-002530-ao7kenbx 128 2 expression expression NN cord-002530-ao7kenbx 128 3 levels level NNS cord-002530-ao7kenbx 128 4 of of IN cord-002530-ao7kenbx 128 5 UL36 UL36 NNP cord-002530-ao7kenbx 128 6 and and CC cord-002530-ao7kenbx 128 7 UL37 UL37 NNP cord-002530-ao7kenbx 128 8 , , , cord-002530-ao7kenbx 128 9 UL112/113 ul112/113 JJ cord-002530-ao7kenbx 128 10 and and CC cord-002530-ao7kenbx 128 11 the the DT cord-002530-ao7kenbx 128 12 MIE MIE NNP cord-002530-ao7kenbx 128 13 transcripts transcript NNS cord-002530-ao7kenbx 129 1 UL122 UL122 NNP cord-002530-ao7kenbx 129 2 ( ( -LRB- cord-002530-ao7kenbx 129 3 IE2 IE2 NNP cord-002530-ao7kenbx 129 4 ) ) -RRB- cord-002530-ao7kenbx 129 5 and and CC cord-002530-ao7kenbx 129 6 UL123 UL123 NNP cord-002530-ao7kenbx 129 7 ( ( -LRB- cord-002530-ao7kenbx 129 8 IE1 ie1 NN cord-002530-ao7kenbx 129 9 ) ) -RRB- cord-002530-ao7kenbx 129 10 were be VBD cord-002530-ao7kenbx 129 11 relatively relatively RB cord-002530-ao7kenbx 129 12 higher high JJR cord-002530-ao7kenbx 129 13 at at IN cord-002530-ao7kenbx 129 14 24HPI 24hpi CD cord-002530-ao7kenbx 129 15 in in IN cord-002530-ao7kenbx 129 16 VCP VCP NNP cord-002530-ao7kenbx 129 17 knockdown knockdown NN cord-002530-ao7kenbx 129 18 cells cell NNS cord-002530-ao7kenbx 129 19 compared compare VBN cord-002530-ao7kenbx 129 20 to to IN cord-002530-ao7kenbx 129 21 control control NN cord-002530-ao7kenbx 129 22 cells cell NNS cord-002530-ao7kenbx 129 23 . . . cord-002530-ao7kenbx 130 1 However however RB cord-002530-ao7kenbx 130 2 , , , cord-002530-ao7kenbx 130 3 at at IN cord-002530-ao7kenbx 130 4 48 48 CD cord-002530-ao7kenbx 130 5 and and CC cord-002530-ao7kenbx 130 6 72 72 CD cord-002530-ao7kenbx 130 7 HPI HPI NNP cord-002530-ao7kenbx 130 8 there there EX cord-002530-ao7kenbx 130 9 is be VBZ cord-002530-ao7kenbx 130 10 more more RBR cord-002530-ao7kenbx 130 11 profound profound JJ cord-002530-ao7kenbx 130 12 global global JJ cord-002530-ao7kenbx 130 13 suppression suppression NN cord-002530-ao7kenbx 130 14 of of IN cord-002530-ao7kenbx 130 15 virus virus NN cord-002530-ao7kenbx 130 16 gene gene NN cord-002530-ao7kenbx 130 17 expression expression NN cord-002530-ao7kenbx 130 18 in in IN cord-002530-ao7kenbx 130 19 VCP VCP NNP cord-002530-ao7kenbx 130 20 knockdown knockdown NN cord-002530-ao7kenbx 130 21 cells cell NNS cord-002530-ao7kenbx 130 22 . . . cord-002530-ao7kenbx 131 1 This this DT cord-002530-ao7kenbx 131 2 is be VBZ cord-002530-ao7kenbx 131 3 particularly particularly RB cord-002530-ao7kenbx 131 4 apparent apparent JJ cord-002530-ao7kenbx 131 5 for for IN cord-002530-ao7kenbx 131 6 the the DT cord-002530-ao7kenbx 131 7 non non JJ cord-002530-ao7kenbx 131 8 - - JJ cord-002530-ao7kenbx 131 9 coding coding JJ cord-002530-ao7kenbx 131 10 genes gene NNS cord-002530-ao7kenbx 131 11 RNA RNA NNP cord-002530-ao7kenbx 131 12 4.9 4.9 CD cord-002530-ao7kenbx 131 13 and and CC cord-002530-ao7kenbx 131 14 5.0 5.0 CD cord-002530-ao7kenbx 131 15 and and CC cord-002530-ao7kenbx 131 16 other other JJ cord-002530-ao7kenbx 131 17 genes gene NNS cord-002530-ao7kenbx 131 18 that that WDT cord-002530-ao7kenbx 131 19 are be VBP cord-002530-ao7kenbx 131 20 highly highly RB cord-002530-ao7kenbx 131 21 up up RB cord-002530-ao7kenbx 131 22 regulated regulate VBN cord-002530-ao7kenbx 131 23 at at IN cord-002530-ao7kenbx 131 24 later later JJ cord-002530-ao7kenbx 131 25 stages stage NNS cord-002530-ao7kenbx 131 26 of of IN cord-002530-ao7kenbx 131 27 infection infection NN cord-002530-ao7kenbx 131 28 , , , cord-002530-ao7kenbx 131 29 including include VBG cord-002530-ao7kenbx 131 30 UL85 UL85 NNP cord-002530-ao7kenbx 131 31 , , , cord-002530-ao7kenbx 131 32 UL86 UL86 NNP cord-002530-ao7kenbx 131 33 , , , cord-002530-ao7kenbx 131 34 UL100 UL100 NNP cord-002530-ao7kenbx 131 35 and and CC cord-002530-ao7kenbx 131 36 UL102 UL102 NNP cord-002530-ao7kenbx 131 37 . . . cord-002530-ao7kenbx 132 1 Despite despite IN cord-002530-ao7kenbx 132 2 the the DT cord-002530-ao7kenbx 132 3 loss loss NN cord-002530-ao7kenbx 132 4 of of IN cord-002530-ao7kenbx 132 5 IE2 ie2 JJ cord-002530-ao7kenbx 132 6 expression expression NN cord-002530-ao7kenbx 132 7 , , , cord-002530-ao7kenbx 132 8 the the DT cord-002530-ao7kenbx 132 9 expression expression NN cord-002530-ao7kenbx 132 10 of of IN cord-002530-ao7kenbx 132 11 a a DT cord-002530-ao7kenbx 132 12 subset subset NN cord-002530-ao7kenbx 132 13 of of IN cord-002530-ao7kenbx 132 14 viral viral JJ cord-002530-ao7kenbx 132 15 genes gene NNS cord-002530-ao7kenbx 132 16 remained remain VBD cord-002530-ao7kenbx 132 17 equivalent equivalent JJ cord-002530-ao7kenbx 132 18 to to IN cord-002530-ao7kenbx 132 19 control control NN cord-002530-ao7kenbx 132 20 levels level NNS cord-002530-ao7kenbx 132 21 following follow VBG cord-002530-ao7kenbx 132 22 knockdown knockdown NN cord-002530-ao7kenbx 132 23 of of IN cord-002530-ao7kenbx 132 24 VCP VCP NNP cord-002530-ao7kenbx 132 25 ( ( -LRB- cord-002530-ao7kenbx 132 26 Fig Fig NNP cord-002530-ao7kenbx 132 27 7 7 CD cord-002530-ao7kenbx 132 28 and and CC cord-002530-ao7kenbx 132 29 S7 S7 NNP cord-002530-ao7kenbx 132 30 Fig Fig NNP cord-002530-ao7kenbx 132 31 ) ) -RRB- cord-002530-ao7kenbx 132 32 . . . cord-002530-ao7kenbx 133 1 These these DT cord-002530-ao7kenbx 133 2 include include VBP cord-002530-ao7kenbx 133 3 UL21A UL21A VBN cord-002530-ao7kenbx 133 4 , , , cord-002530-ao7kenbx 133 5 UL36 UL36 NNP cord-002530-ao7kenbx 133 6 and and CC cord-002530-ao7kenbx 133 7 UL38 UL38 NNP cord-002530-ao7kenbx 133 8 , , , cord-002530-ao7kenbx 133 9 UL111A ul111a JJ cord-002530-ao7kenbx 133 10 and and CC cord-002530-ao7kenbx 133 11 UL112/113 UL112/113 NNS cord-002530-ao7kenbx 133 12 , , , cord-002530-ao7kenbx 133 13 UL123 UL123 NNP cord-002530-ao7kenbx 133 14 ( ( -LRB- cord-002530-ao7kenbx 133 15 IE1 ie1 NN cord-002530-ao7kenbx 133 16 ) ) -RRB- cord-002530-ao7kenbx 133 17 and and CC cord-002530-ao7kenbx 133 18 UL144 UL144 NNS cord-002530-ao7kenbx 133 19 . . . cord-002530-ao7kenbx 134 1 This this DT cord-002530-ao7kenbx 134 2 is be VBZ cord-002530-ao7kenbx 134 3 particularly particularly RB cord-002530-ao7kenbx 134 4 surprising surprising JJ cord-002530-ao7kenbx 134 5 for for IN cord-002530-ao7kenbx 134 6 UL112/113 UL112/113 NNS cord-002530-ao7kenbx 134 7 which which WDT cord-002530-ao7kenbx 134 8 has have VBZ cord-002530-ao7kenbx 134 9 previously previously RB cord-002530-ao7kenbx 134 10 been be VBN cord-002530-ao7kenbx 134 11 identified identify VBN cord-002530-ao7kenbx 134 12 as as IN cord-002530-ao7kenbx 134 13 a a DT cord-002530-ao7kenbx 134 14 target target NN cord-002530-ao7kenbx 134 15 for for IN cord-002530-ao7kenbx 134 16 IE2 ie2 JJ cord-002530-ao7kenbx 134 17 transactivation transactivation NN cord-002530-ao7kenbx 134 18 [ [ -LRB- cord-002530-ao7kenbx 134 19 31 31 CD cord-002530-ao7kenbx 134 20 , , , cord-002530-ao7kenbx 134 21 32 32 CD cord-002530-ao7kenbx 134 22 ] ] -RRB- cord-002530-ao7kenbx 134 23 . . . cord-002530-ao7kenbx 135 1 VCP VCP NNP cord-002530-ao7kenbx 135 2 is be VBZ cord-002530-ao7kenbx 135 3 essential essential JJ cord-002530-ao7kenbx 135 4 for for IN cord-002530-ao7kenbx 135 5 HCMV HCMV NNP cord-002530-ao7kenbx 135 6 replication replication NN cord-002530-ao7kenbx 135 7 Altered alter VBN cord-002530-ao7kenbx 135 8 MIE mie NN cord-002530-ao7kenbx 135 9 splicing splicing NN cord-002530-ao7kenbx 135 10 is be VBZ cord-002530-ao7kenbx 135 11 not not RB cord-002530-ao7kenbx 135 12 due due JJ cord-002530-ao7kenbx 135 13 to to IN cord-002530-ao7kenbx 135 14 changes change NNS cord-002530-ao7kenbx 135 15 in in IN cord-002530-ao7kenbx 135 16 cell cell NN cord-002530-ao7kenbx 135 17 cycle cycle NN cord-002530-ao7kenbx 135 18 or or CC cord-002530-ao7kenbx 135 19 delay delay VB cord-002530-ao7kenbx 135 20 in in IN cord-002530-ao7kenbx 135 21 replication replication NN cord-002530-ao7kenbx 135 22 progression progression NN cord-002530-ao7kenbx 135 23 following follow VBG cord-002530-ao7kenbx 135 24 VCP VCP NNP cord-002530-ao7kenbx 135 25 knockdown knockdown NN cord-002530-ao7kenbx 135 26 Previous previous JJ cord-002530-ao7kenbx 135 27 studies study NNS cord-002530-ao7kenbx 135 28 have have VBP cord-002530-ao7kenbx 135 29 shown show VBN cord-002530-ao7kenbx 135 30 that that IN cord-002530-ao7kenbx 135 31 the the DT cord-002530-ao7kenbx 135 32 cell cell NN cord-002530-ao7kenbx 135 33 cycle cycle NN cord-002530-ao7kenbx 135 34 impacts impact NNS cord-002530-ao7kenbx 135 35 on on IN cord-002530-ao7kenbx 135 36 the the DT cord-002530-ao7kenbx 135 37 regulation regulation NN cord-002530-ao7kenbx 135 38 of of IN cord-002530-ao7kenbx 135 39 MIE MIE NNP cord-002530-ao7kenbx 135 40 alternative alternative NN cord-002530-ao7kenbx 135 41 splicing splicing NN cord-002530-ao7kenbx 135 42 with with IN cord-002530-ao7kenbx 135 43 IE2 ie2 JJ cord-002530-ao7kenbx 135 44 splicing splicing NN cord-002530-ao7kenbx 135 45 and and CC cord-002530-ao7kenbx 135 46 virus virus NN cord-002530-ao7kenbx 135 47 replication replication NN cord-002530-ao7kenbx 135 48 blocked block VBN cord-002530-ao7kenbx 135 49 at at IN cord-002530-ao7kenbx 135 50 the the DT cord-002530-ao7kenbx 135 51 G2 G2 NNP cord-002530-ao7kenbx 135 52 / / SYM cord-002530-ao7kenbx 135 53 M M NNP cord-002530-ao7kenbx 135 54 phase phase NN cord-002530-ao7kenbx 135 55 [ [ -LRB- cord-002530-ao7kenbx 135 56 33 33 CD cord-002530-ao7kenbx 135 57 ] ] -RRB- cord-002530-ao7kenbx 135 58 . . . cord-002530-ao7kenbx 136 1 Furthermore furthermore RB cord-002530-ao7kenbx 136 2 , , , cord-002530-ao7kenbx 136 3 cyclin cyclin NN cord-002530-ao7kenbx 136 4 dependent dependent JJ cord-002530-ao7kenbx 136 5 kinases kinase NNS cord-002530-ao7kenbx 136 6 are be VBP cord-002530-ao7kenbx 136 7 required require VBN cord-002530-ao7kenbx 136 8 for for IN cord-002530-ao7kenbx 136 9 efficient efficient JJ cord-002530-ao7kenbx 136 10 IE2 ie2 JJ cord-002530-ao7kenbx 136 11 expression expression NN cord-002530-ao7kenbx 136 12 and and CC cord-002530-ao7kenbx 136 13 cyclin cyclin NN cord-002530-ao7kenbx 136 14 A2 A2 NNP cord-002530-ao7kenbx 136 15 overexpression overexpression NN cord-002530-ao7kenbx 136 16 inhibits inhibit VBZ cord-002530-ao7kenbx 136 17 IE2 ie2 NN cord-002530-ao7kenbx 136 18 splicing splicing NN cord-002530-ao7kenbx 136 19 and and CC cord-002530-ao7kenbx 136 20 virus virus NN cord-002530-ao7kenbx 136 21 replication replication NN cord-002530-ao7kenbx 136 22 [ [ -LRB- cord-002530-ao7kenbx 136 23 34 34 CD cord-002530-ao7kenbx 136 24 ] ] -RRB- cord-002530-ao7kenbx 136 25 . . . cord-002530-ao7kenbx 137 1 To to TO cord-002530-ao7kenbx 137 2 determine determine VB cord-002530-ao7kenbx 137 3 whether whether IN cord-002530-ao7kenbx 137 4 knockdown knockdown NN cord-002530-ao7kenbx 137 5 of of IN cord-002530-ao7kenbx 137 6 VCP VCP NNP cord-002530-ao7kenbx 137 7 results result NNS cord-002530-ao7kenbx 137 8 in in IN cord-002530-ao7kenbx 137 9 alterations alteration NNS cord-002530-ao7kenbx 137 10 in in IN cord-002530-ao7kenbx 137 11 cell cell NN cord-002530-ao7kenbx 137 12 cycle cycle NN cord-002530-ao7kenbx 137 13 , , , cord-002530-ao7kenbx 137 14 which which WDT cord-002530-ao7kenbx 137 15 in in IN cord-002530-ao7kenbx 137 16 turn turn NN cord-002530-ao7kenbx 137 17 regulates regulate VBZ cord-002530-ao7kenbx 137 18 MIE MIE NNP cord-002530-ao7kenbx 137 19 splicing splicing NN cord-002530-ao7kenbx 137 20 , , , cord-002530-ao7kenbx 137 21 cells cell NNS cord-002530-ao7kenbx 137 22 were be VBD cord-002530-ao7kenbx 137 23 stained stain VBN cord-002530-ao7kenbx 137 24 with with IN cord-002530-ao7kenbx 137 25 propidium propidium NN cord-002530-ao7kenbx 137 26 iodide iodide NN cord-002530-ao7kenbx 137 27 following follow VBG cord-002530-ao7kenbx 137 28 VCP VCP NNP cord-002530-ao7kenbx 137 29 knockdown knockdown NN cord-002530-ao7kenbx 137 30 . . . cord-002530-ao7kenbx 138 1 The the DT cord-002530-ao7kenbx 138 2 results result NNS cord-002530-ao7kenbx 138 3 clearly clearly RB cord-002530-ao7kenbx 138 4 show show VBP cord-002530-ao7kenbx 138 5 that that IN cord-002530-ao7kenbx 138 6 knockdown knockdown NN cord-002530-ao7kenbx 138 7 of of IN cord-002530-ao7kenbx 138 8 VCP VCP NNP cord-002530-ao7kenbx 138 9 has have VBZ cord-002530-ao7kenbx 138 10 no no DT cord-002530-ao7kenbx 138 11 gross gross JJ cord-002530-ao7kenbx 138 12 effect effect NN cord-002530-ao7kenbx 138 13 on on IN cord-002530-ao7kenbx 138 14 cell cell NN cord-002530-ao7kenbx 138 15 cycle cycle NN cord-002530-ao7kenbx 138 16 control control NN cord-002530-ao7kenbx 138 17 ( ( -LRB- cord-002530-ao7kenbx 138 18 Fig Fig NNP cord-002530-ao7kenbx 138 19 8) 8) NN cord-002530-ao7kenbx 138 20 . . . cord-002530-ao7kenbx 139 1 Consistent consistent JJ cord-002530-ao7kenbx 139 2 with with IN cord-002530-ao7kenbx 139 3 the the DT cord-002530-ao7kenbx 139 4 majority majority NN cord-002530-ao7kenbx 139 5 of of IN cord-002530-ao7kenbx 139 6 cells cell NNS cord-002530-ao7kenbx 139 7 being be VBG cord-002530-ao7kenbx 139 8 in in IN cord-002530-ao7kenbx 139 9 G0 G0 NNP cord-002530-ao7kenbx 139 10 / / SYM cord-002530-ao7kenbx 139 11 G1 G1 NNP cord-002530-ao7kenbx 139 12 phase phase NN cord-002530-ao7kenbx 139 13 , , , cord-002530-ao7kenbx 139 14 cyclin cyclin NN cord-002530-ao7kenbx 139 15 A2 A2 NNP cord-002530-ao7kenbx 139 16 levels level NNS cord-002530-ao7kenbx 139 17 remained remain VBD cord-002530-ao7kenbx 139 18 undetectable undetectable JJ cord-002530-ao7kenbx 139 19 by by IN cord-002530-ao7kenbx 139 20 western western JJ cord-002530-ao7kenbx 139 21 blot blot NN cord-002530-ao7kenbx 139 22 in in IN cord-002530-ao7kenbx 139 23 control control NN cord-002530-ao7kenbx 139 24 and and CC cord-002530-ao7kenbx 139 25 VCP VCP NNP cord-002530-ao7kenbx 139 26 knockdown knockdown NN cord-002530-ao7kenbx 139 27 cells cell NNS cord-002530-ao7kenbx 139 28 ( ( -LRB- cord-002530-ao7kenbx 139 29 S8 S8 NNP cord-002530-ao7kenbx 139 30 Fig Fig NNP cord-002530-ao7kenbx 139 31 ) ) -RRB- cord-002530-ao7kenbx 139 32 . . . cord-002530-ao7kenbx 140 1 These these DT cord-002530-ao7kenbx 140 2 results result NNS cord-002530-ao7kenbx 140 3 show show VBP cord-002530-ao7kenbx 140 4 that that IN cord-002530-ao7kenbx 140 5 regulation regulation NN cord-002530-ao7kenbx 140 6 of of IN cord-002530-ao7kenbx 140 7 MIE MIE NNP cord-002530-ao7kenbx 140 8 splicing splicing NN cord-002530-ao7kenbx 140 9 by by IN cord-002530-ao7kenbx 140 10 VCP VCP NNP cord-002530-ao7kenbx 140 11 is be VBZ cord-002530-ao7kenbx 140 12 not not RB cord-002530-ao7kenbx 140 13 a a DT cord-002530-ao7kenbx 140 14 consequence consequence NN cord-002530-ao7kenbx 140 15 of of IN cord-002530-ao7kenbx 140 16 alterations alteration NNS cord-002530-ao7kenbx 140 17 in in IN cord-002530-ao7kenbx 140 18 cell cell NN cord-002530-ao7kenbx 140 19 cycle cycle NN cord-002530-ao7kenbx 140 20 control control NN cord-002530-ao7kenbx 140 21 and and CC cord-002530-ao7kenbx 140 22 instead instead RB cord-002530-ao7kenbx 140 23 represents represent VBZ cord-002530-ao7kenbx 140 24 a a DT cord-002530-ao7kenbx 140 25 novel novel JJ cord-002530-ao7kenbx 140 26 regulatory regulatory JJ cord-002530-ao7kenbx 140 27 pathway pathway NN cord-002530-ao7kenbx 140 28 . . . cord-002530-ao7kenbx 141 1 To to TO cord-002530-ao7kenbx 141 2 determine determine VB cord-002530-ao7kenbx 141 3 whether whether IN cord-002530-ao7kenbx 141 4 the the DT cord-002530-ao7kenbx 141 5 effect effect NN cord-002530-ao7kenbx 141 6 of of IN cord-002530-ao7kenbx 141 7 VCP VCP NNP cord-002530-ao7kenbx 141 8 on on IN cord-002530-ao7kenbx 141 9 MIE MIE NNP cord-002530-ao7kenbx 141 10 expression expression NN cord-002530-ao7kenbx 141 11 could could MD cord-002530-ao7kenbx 141 12 be be VB cord-002530-ao7kenbx 141 13 the the DT cord-002530-ao7kenbx 141 14 result result NN cord-002530-ao7kenbx 141 15 of of IN cord-002530-ao7kenbx 141 16 a a DT cord-002530-ao7kenbx 141 17 simple simple JJ cord-002530-ao7kenbx 141 18 delay delay NN cord-002530-ao7kenbx 141 19 or or CC cord-002530-ao7kenbx 141 20 inhibition inhibition NN cord-002530-ao7kenbx 141 21 of of IN cord-002530-ao7kenbx 141 22 progression progression NN cord-002530-ao7kenbx 141 23 in in IN cord-002530-ao7kenbx 141 24 virus virus NN cord-002530-ao7kenbx 141 25 replication replication NN cord-002530-ao7kenbx 141 26 , , , cord-002530-ao7kenbx 141 27 we -PRON- PRP cord-002530-ao7kenbx 141 28 compared compare VBD cord-002530-ao7kenbx 141 29 MIE MIE NNP cord-002530-ao7kenbx 141 30 protein protein NN cord-002530-ao7kenbx 141 31 and and CC cord-002530-ao7kenbx 141 32 transcript transcript NN cord-002530-ao7kenbx 141 33 levels level NNS cord-002530-ao7kenbx 141 34 following follow VBG cord-002530-ao7kenbx 141 35 treatment treatment NN cord-002530-ao7kenbx 141 36 of of IN cord-002530-ao7kenbx 141 37 cells cell NNS cord-002530-ao7kenbx 141 38 with with IN cord-002530-ao7kenbx 141 39 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 141 40 , , , cord-002530-ao7kenbx 141 41 a a DT cord-002530-ao7kenbx 141 42 well well RB cord-002530-ao7kenbx 141 43 characterized characterize VBN cord-002530-ao7kenbx 141 44 drug drug NN cord-002530-ao7kenbx 141 45 , , , cord-002530-ao7kenbx 141 46 which which WDT cord-002530-ao7kenbx 141 47 inhibits inhibit VBZ cord-002530-ao7kenbx 141 48 viral viral JJ cord-002530-ao7kenbx 141 49 DNA dna NN cord-002530-ao7kenbx 141 50 synthesis synthesis NN cord-002530-ao7kenbx 141 51 . . . cord-002530-ao7kenbx 142 1 While while IN cord-002530-ao7kenbx 142 2 both both DT cord-002530-ao7kenbx 142 3 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 142 4 treatment treatment NN cord-002530-ao7kenbx 142 5 and and CC cord-002530-ao7kenbx 142 6 VCP VCP NNP cord-002530-ao7kenbx 142 7 knockdown knockdown NN cord-002530-ao7kenbx 142 8 result result NN cord-002530-ao7kenbx 142 9 in in IN cord-002530-ao7kenbx 142 10 substantial substantial JJ cord-002530-ao7kenbx 142 11 reductions reduction NNS cord-002530-ao7kenbx 142 12 in in IN cord-002530-ao7kenbx 142 13 IE2 ie2 JJ cord-002530-ao7kenbx 142 14 gene gene NN cord-002530-ao7kenbx 142 15 expression expression NN cord-002530-ao7kenbx 142 16 , , , cord-002530-ao7kenbx 142 17 only only RB cord-002530-ao7kenbx 142 18 knockdown knockdown NN cord-002530-ao7kenbx 142 19 of of IN cord-002530-ao7kenbx 142 20 VCP VCP NNP cord-002530-ao7kenbx 142 21 results result NNS cord-002530-ao7kenbx 142 22 in in IN cord-002530-ao7kenbx 142 23 a a DT cord-002530-ao7kenbx 142 24 corresponding corresponding JJ cord-002530-ao7kenbx 142 25 increase increase NN cord-002530-ao7kenbx 142 26 in in IN cord-002530-ao7kenbx 142 27 IE1 ie1 NN cord-002530-ao7kenbx 142 28 gene gene NN cord-002530-ao7kenbx 142 29 expression expression NN cord-002530-ao7kenbx 142 30 and and CC cord-002530-ao7kenbx 142 31 relative relative JJ cord-002530-ao7kenbx 142 32 changes change NNS cord-002530-ao7kenbx 142 33 in in IN cord-002530-ao7kenbx 142 34 IE1 ie1 NN cord-002530-ao7kenbx 142 35 and and CC cord-002530-ao7kenbx 142 36 IE2 ie2 NN cord-002530-ao7kenbx 142 37 splicing splicing NN cord-002530-ao7kenbx 142 38 ( ( -LRB- cord-002530-ao7kenbx 142 39 S9 S9 NNP cord-002530-ao7kenbx 142 40 Fig Fig NNP cord-002530-ao7kenbx 142 41 ) ) -RRB- cord-002530-ao7kenbx 142 42 . . . cord-002530-ao7kenbx 143 1 Furthermore furthermore RB cord-002530-ao7kenbx 143 2 , , , cord-002530-ao7kenbx 143 3 in in IN cord-002530-ao7kenbx 143 4 contrast contrast NN cord-002530-ao7kenbx 143 5 to to IN cord-002530-ao7kenbx 143 6 VCP VCP NNP cord-002530-ao7kenbx 143 7 knockdown knockdown NN cord-002530-ao7kenbx 143 8 , , , cord-002530-ao7kenbx 143 9 IE2 ie2 NN cord-002530-ao7kenbx 143 10 and and CC cord-002530-ao7kenbx 143 11 pp52 pp52 NNP cord-002530-ao7kenbx 143 12 expression expression NN cord-002530-ao7kenbx 143 13 could could MD cord-002530-ao7kenbx 143 14 be be VB cord-002530-ao7kenbx 143 15 detected detect VBN cord-002530-ao7kenbx 143 16 four four CD cord-002530-ao7kenbx 143 17 days day NNS cord-002530-ao7kenbx 143 18 post post NN cord-002530-ao7kenbx 143 19 infection infection NN cord-002530-ao7kenbx 143 20 following follow VBG cord-002530-ao7kenbx 143 21 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 143 22 treatment treatment NN cord-002530-ao7kenbx 143 23 . . . cord-002530-ao7kenbx 144 1 These these DT cord-002530-ao7kenbx 144 2 data datum NNS cord-002530-ao7kenbx 144 3 suggest suggest VBP cord-002530-ao7kenbx 144 4 alterations alteration NNS cord-002530-ao7kenbx 144 5 in in IN cord-002530-ao7kenbx 144 6 MIE MIE NNP cord-002530-ao7kenbx 144 7 levels level NNS cord-002530-ao7kenbx 144 8 , , , cord-002530-ao7kenbx 144 9 caused cause VBN cord-002530-ao7kenbx 144 10 by by IN cord-002530-ao7kenbx 144 11 VCP VCP NNP cord-002530-ao7kenbx 144 12 knockdown knockdown NN cord-002530-ao7kenbx 144 13 are be VBP cord-002530-ao7kenbx 144 14 not not RB cord-002530-ao7kenbx 144 15 an an DT cord-002530-ao7kenbx 144 16 artifact artifact NN cord-002530-ao7kenbx 144 17 of of IN cord-002530-ao7kenbx 144 18 delayed delay VBN cord-002530-ao7kenbx 144 19 virus virus NN cord-002530-ao7kenbx 144 20 replication replication NN cord-002530-ao7kenbx 144 21 . . . cord-002530-ao7kenbx 145 1 Previous previous JJ cord-002530-ao7kenbx 145 2 studies study NNS cord-002530-ao7kenbx 145 3 have have VBP cord-002530-ao7kenbx 145 4 demonstrated demonstrate VBN cord-002530-ao7kenbx 145 5 that that IN cord-002530-ao7kenbx 145 6 VCP VCP NNP cord-002530-ao7kenbx 145 7 plays play VBZ cord-002530-ao7kenbx 145 8 an an DT cord-002530-ao7kenbx 145 9 important important JJ cord-002530-ao7kenbx 145 10 role role NN cord-002530-ao7kenbx 145 11 in in IN cord-002530-ao7kenbx 145 12 the the DT cord-002530-ao7kenbx 145 13 cytoplasm cytoplasm NN cord-002530-ao7kenbx 145 14 of of IN cord-002530-ao7kenbx 145 15 HCMV HCMV NNP cord-002530-ao7kenbx 145 16 infected infected JJ cord-002530-ao7kenbx 145 17 cells cell NNS cord-002530-ao7kenbx 145 18 , , , cord-002530-ao7kenbx 145 19 mediating mediate VBG cord-002530-ao7kenbx 145 20 US11-dependent us11-dependent CD cord-002530-ao7kenbx 145 21 degradation degradation NN cord-002530-ao7kenbx 145 22 of of IN cord-002530-ao7kenbx 145 23 MHC MHC NNP cord-002530-ao7kenbx 145 24 class class NN cord-002530-ao7kenbx 145 25 I i NN cord-002530-ao7kenbx 145 26 , , , cord-002530-ao7kenbx 145 27 by by IN cord-002530-ao7kenbx 145 28 stripping strip VBG cord-002530-ao7kenbx 145 29 the the DT cord-002530-ao7kenbx 145 30 protein protein NN cord-002530-ao7kenbx 145 31 from from IN cord-002530-ao7kenbx 145 32 the the DT cord-002530-ao7kenbx 145 33 ER ER NNP cord-002530-ao7kenbx 145 34 membrane membrane NN cord-002530-ao7kenbx 145 35 in in IN cord-002530-ao7kenbx 145 36 a a DT cord-002530-ao7kenbx 145 37 ubiquitin ubiquitin JJ cord-002530-ao7kenbx 145 38 dependent dependent JJ cord-002530-ao7kenbx 145 39 manner manner NN cord-002530-ao7kenbx 145 40 [ [ -LRB- cord-002530-ao7kenbx 145 41 27 27 CD cord-002530-ao7kenbx 145 42 ] ] -RRB- cord-002530-ao7kenbx 145 43 . . . cord-002530-ao7kenbx 146 1 To to TO cord-002530-ao7kenbx 146 2 determine determine VB cord-002530-ao7kenbx 146 3 the the DT cord-002530-ao7kenbx 146 4 cellular cellular JJ cord-002530-ao7kenbx 146 5 localisation localisation NN cord-002530-ao7kenbx 146 6 of of IN cord-002530-ao7kenbx 146 7 VCP VCP NNP cord-002530-ao7kenbx 146 8 during during IN cord-002530-ao7kenbx 146 9 HCMV HCMV NNP cord-002530-ao7kenbx 146 10 infection infection NN cord-002530-ao7kenbx 146 11 , , , cord-002530-ao7kenbx 146 12 primary primary JJ cord-002530-ao7kenbx 146 13 fibroblast fibroblast NN cord-002530-ao7kenbx 146 14 cells cell NNS cord-002530-ao7kenbx 146 15 were be VBD cord-002530-ao7kenbx 146 16 infected infect VBN cord-002530-ao7kenbx 146 17 at at IN cord-002530-ao7kenbx 146 18 high high JJ cord-002530-ao7kenbx 146 19 MOI MOI NNP cord-002530-ao7kenbx 146 20 with with IN cord-002530-ao7kenbx 146 21 HCMV HCMV NNP cord-002530-ao7kenbx 146 22 , , , cord-002530-ao7kenbx 146 23 fixed fix VBN cord-002530-ao7kenbx 146 24 at at IN cord-002530-ao7kenbx 146 25 24-hour 24-hour JJ cord-002530-ao7kenbx 146 26 time time NN cord-002530-ao7kenbx 146 27 points point NNS cord-002530-ao7kenbx 146 28 and and CC cord-002530-ao7kenbx 146 29 stained stain VBN cord-002530-ao7kenbx 146 30 for for IN cord-002530-ao7kenbx 146 31 VCP VCP NNP cord-002530-ao7kenbx 146 32 . . . cord-002530-ao7kenbx 147 1 As as IN cord-002530-ao7kenbx 147 2 shown show VBN cord-002530-ao7kenbx 147 3 in in IN cord-002530-ao7kenbx 147 4 Fig Fig NNP cord-002530-ao7kenbx 147 5 9 9 CD cord-002530-ao7kenbx 147 6 , , , cord-002530-ao7kenbx 147 7 VCP VCP NNP cord-002530-ao7kenbx 147 8 displayed display VBD cord-002530-ao7kenbx 147 9 dynamic dynamic JJ cord-002530-ao7kenbx 147 10 temporal temporal JJ cord-002530-ao7kenbx 147 11 cellular cellular JJ cord-002530-ao7kenbx 147 12 localisation localisation NN cord-002530-ao7kenbx 147 13 during during IN cord-002530-ao7kenbx 147 14 HCMV HCMV NNP cord-002530-ao7kenbx 147 15 infection infection NN cord-002530-ao7kenbx 147 16 . . . cord-002530-ao7kenbx 148 1 In in IN cord-002530-ao7kenbx 148 2 uninfected uninfected JJ cord-002530-ao7kenbx 148 3 cells cell NNS cord-002530-ao7kenbx 148 4 , , , cord-002530-ao7kenbx 148 5 VCP VCP NNP cord-002530-ao7kenbx 148 6 staining staining NN cord-002530-ao7kenbx 148 7 resulted result VBD cord-002530-ao7kenbx 148 8 in in IN cord-002530-ao7kenbx 148 9 diffuse diffuse JJ cord-002530-ao7kenbx 148 10 signal signal NN cord-002530-ao7kenbx 148 11 throughout throughout IN cord-002530-ao7kenbx 148 12 the the DT cord-002530-ao7kenbx 148 13 cell cell NN cord-002530-ao7kenbx 148 14 . . . cord-002530-ao7kenbx 149 1 However however RB cord-002530-ao7kenbx 149 2 following follow VBG cord-002530-ao7kenbx 149 3 infection infection NN cord-002530-ao7kenbx 149 4 with with IN cord-002530-ao7kenbx 149 5 HCMV HCMV NNP cord-002530-ao7kenbx 149 6 , , , cord-002530-ao7kenbx 149 7 distinct distinct JJ cord-002530-ao7kenbx 149 8 puncta puncta NN cord-002530-ao7kenbx 149 9 can can MD cord-002530-ao7kenbx 149 10 be be VB cord-002530-ao7kenbx 149 11 observed observe VBN cord-002530-ao7kenbx 149 12 in in IN cord-002530-ao7kenbx 149 13 the the DT cord-002530-ao7kenbx 149 14 nucleus nucleus NN cord-002530-ao7kenbx 149 15 of of IN cord-002530-ao7kenbx 149 16 infected infected JJ cord-002530-ao7kenbx 149 17 cells cell NNS cord-002530-ao7kenbx 149 18 . . . cord-002530-ao7kenbx 150 1 By by IN cord-002530-ao7kenbx 150 2 48 48 CD cord-002530-ao7kenbx 150 3 HPI HPI NNP cord-002530-ao7kenbx 150 4 VCP VCP NNP cord-002530-ao7kenbx 150 5 was be VBD cord-002530-ao7kenbx 150 6 consistently consistently RB cord-002530-ao7kenbx 150 7 found find VBN cord-002530-ao7kenbx 150 8 within within IN cord-002530-ao7kenbx 150 9 two two CD cord-002530-ao7kenbx 150 10 large large JJ cord-002530-ao7kenbx 150 11 puncta puncta NN cord-002530-ao7kenbx 150 12 within within IN cord-002530-ao7kenbx 150 13 the the DT cord-002530-ao7kenbx 150 14 nucleus nucleus NN cord-002530-ao7kenbx 150 15 , , , cord-002530-ao7kenbx 150 16 which which WDT cord-002530-ao7kenbx 150 17 increased increase VBD cord-002530-ao7kenbx 150 18 in in IN cord-002530-ao7kenbx 150 19 size size NN cord-002530-ao7kenbx 150 20 by by IN cord-002530-ao7kenbx 150 21 72 72 CD cord-002530-ao7kenbx 150 22 hours hour NNS cord-002530-ao7kenbx 150 23 . . . cord-002530-ao7kenbx 151 1 Such such JJ cord-002530-ao7kenbx 151 2 staining staining NN cord-002530-ao7kenbx 151 3 is be VBZ cord-002530-ao7kenbx 151 4 characteristic characteristic JJ cord-002530-ao7kenbx 151 5 of of IN cord-002530-ao7kenbx 151 6 the the DT cord-002530-ao7kenbx 151 7 viral viral JJ cord-002530-ao7kenbx 151 8 replication replication NN cord-002530-ao7kenbx 151 9 compartments compartment NNS cord-002530-ao7kenbx 151 10 . . . cord-002530-ao7kenbx 152 1 Following follow VBG cord-002530-ao7kenbx 152 2 infection infection NN cord-002530-ao7kenbx 152 3 with with IN cord-002530-ao7kenbx 152 4 HCMV HCMV NNP cord-002530-ao7kenbx 152 5 the the DT cord-002530-ao7kenbx 152 6 viral viral JJ cord-002530-ao7kenbx 152 7 genomes genome NNS cord-002530-ao7kenbx 152 8 are be VBP cord-002530-ao7kenbx 152 9 deposited deposit VBN cord-002530-ao7kenbx 152 10 adjacent adjacent JJ cord-002530-ao7kenbx 152 11 to to IN cord-002530-ao7kenbx 152 12 ND10 ND10 NNP cord-002530-ao7kenbx 152 13 domains domain NNS cord-002530-ao7kenbx 152 14 before before IN cord-002530-ao7kenbx 152 15 forming form VBG cord-002530-ao7kenbx 152 16 two two CD cord-002530-ao7kenbx 152 17 distinct distinct JJ cord-002530-ao7kenbx 152 18 replication replication NN cord-002530-ao7kenbx 152 19 compartments compartment NNS cord-002530-ao7kenbx 152 20 within within IN cord-002530-ao7kenbx 152 21 the the DT cord-002530-ao7kenbx 152 22 nucleus nucleus NN cord-002530-ao7kenbx 152 23 , , , cord-002530-ao7kenbx 152 24 characterized characterize VBN cord-002530-ao7kenbx 152 25 by by IN cord-002530-ao7kenbx 152 26 colocalisation colocalisation NN cord-002530-ao7kenbx 152 27 of of IN cord-002530-ao7kenbx 152 28 viral viral JJ cord-002530-ao7kenbx 152 29 DNA dna NN cord-002530-ao7kenbx 152 30 , , , cord-002530-ao7kenbx 152 31 DNA dna NN cord-002530-ao7kenbx 152 32 replication replication NN cord-002530-ao7kenbx 152 33 proteins protein NNS cord-002530-ao7kenbx 152 34 and and CC cord-002530-ao7kenbx 152 35 IE2 ie2 NN cord-002530-ao7kenbx 152 36 protein protein NN cord-002530-ao7kenbx 152 37 [ [ -LRB- cord-002530-ao7kenbx 152 38 35 35 CD cord-002530-ao7kenbx 152 39 ] ] -RRB- cord-002530-ao7kenbx 152 40 . . . cord-002530-ao7kenbx 153 1 Therefore therefore RB cord-002530-ao7kenbx 153 2 , , , cord-002530-ao7kenbx 153 3 VCP VCP NNP cord-002530-ao7kenbx 153 4 localisation localisation NN cord-002530-ao7kenbx 153 5 to to IN cord-002530-ao7kenbx 153 6 the the DT cord-002530-ao7kenbx 153 7 virus virus NN cord-002530-ao7kenbx 153 8 replication replication NN cord-002530-ao7kenbx 153 9 compartments compartment NNS cord-002530-ao7kenbx 153 10 in in IN cord-002530-ao7kenbx 153 11 the the DT cord-002530-ao7kenbx 153 12 nucleus nucleus NN cord-002530-ao7kenbx 153 13 coincides coincide VBZ cord-002530-ao7kenbx 153 14 with with IN cord-002530-ao7kenbx 153 15 increased increase VBN cord-002530-ao7kenbx 153 16 IE2 ie2 JJ cord-002530-ao7kenbx 153 17 expression expression NN cord-002530-ao7kenbx 153 18 . . . cord-002530-ao7kenbx 154 1 Given give VBN cord-002530-ao7kenbx 154 2 that that IN cord-002530-ao7kenbx 154 3 VCP VCP NNP cord-002530-ao7kenbx 154 4 is be VBZ cord-002530-ao7kenbx 154 5 essential essential JJ cord-002530-ao7kenbx 154 6 for for IN cord-002530-ao7kenbx 154 7 HCMV HCMV NNP cord-002530-ao7kenbx 154 8 replication replication NN cord-002530-ao7kenbx 154 9 , , , cord-002530-ao7kenbx 154 10 we -PRON- PRP cord-002530-ao7kenbx 154 11 investigated investigate VBD cord-002530-ao7kenbx 154 12 whether whether IN cord-002530-ao7kenbx 154 13 small small JJ cord-002530-ao7kenbx 154 14 molecule molecule NN cord-002530-ao7kenbx 154 15 inhibitors inhibitor NNS cord-002530-ao7kenbx 154 16 against against IN cord-002530-ao7kenbx 154 17 VCP VCP NNP cord-002530-ao7kenbx 154 18 are be VBP cord-002530-ao7kenbx 154 19 viable viable JJ cord-002530-ao7kenbx 154 20 antiviral antiviral JJ cord-002530-ao7kenbx 154 21 candidates candidate NNS cord-002530-ao7kenbx 154 22 . . . cord-002530-ao7kenbx 155 1 Because because IN cord-002530-ao7kenbx 155 2 VCP VCP NNP cord-002530-ao7kenbx 155 3 is be VBZ cord-002530-ao7kenbx 155 4 a a DT cord-002530-ao7kenbx 155 5 potential potential JJ cord-002530-ao7kenbx 155 6 anti anti JJ cord-002530-ao7kenbx 155 7 - - JJ cord-002530-ao7kenbx 155 8 cancer cancer JJ cord-002530-ao7kenbx 155 9 target target NN cord-002530-ao7kenbx 155 10 , , , cord-002530-ao7kenbx 155 11 a a DT cord-002530-ao7kenbx 155 12 number number NN cord-002530-ao7kenbx 155 13 of of IN cord-002530-ao7kenbx 155 14 effective effective JJ cord-002530-ao7kenbx 155 15 small small JJ cord-002530-ao7kenbx 155 16 molecule molecule NN cord-002530-ao7kenbx 155 17 inhibitors inhibitor NNS cord-002530-ao7kenbx 155 18 of of IN cord-002530-ao7kenbx 155 19 VCP VCP NNP cord-002530-ao7kenbx 155 20 have have VBP cord-002530-ao7kenbx 155 21 been be VBN cord-002530-ao7kenbx 155 22 developed develop VBN cord-002530-ao7kenbx 155 23 . . . cord-002530-ao7kenbx 156 1 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 156 2 is be VBZ cord-002530-ao7kenbx 156 3 a a DT cord-002530-ao7kenbx 156 4 highly highly RB cord-002530-ao7kenbx 156 5 potent potent JJ cord-002530-ao7kenbx 156 6 and and CC cord-002530-ao7kenbx 156 7 selective selective JJ cord-002530-ao7kenbx 156 8 inhibitor inhibitor NN cord-002530-ao7kenbx 156 9 of of IN cord-002530-ao7kenbx 156 10 VCP VCP NNP cord-002530-ao7kenbx 156 11 [ [ -LRB- cord-002530-ao7kenbx 156 12 36 36 CD cord-002530-ao7kenbx 156 13 ] ] -RRB- cord-002530-ao7kenbx 156 14 . . . cord-002530-ao7kenbx 157 1 To to TO cord-002530-ao7kenbx 157 2 determine determine VB cord-002530-ao7kenbx 157 3 whether whether IN cord-002530-ao7kenbx 157 4 treatment treatment NN cord-002530-ao7kenbx 157 5 of of IN cord-002530-ao7kenbx 157 6 infected infected JJ cord-002530-ao7kenbx 157 7 cells cell NNS cord-002530-ao7kenbx 157 8 with with IN cord-002530-ao7kenbx 157 9 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 157 10 results result NNS cord-002530-ao7kenbx 157 11 in in IN cord-002530-ao7kenbx 157 12 the the DT cord-002530-ao7kenbx 157 13 same same JJ cord-002530-ao7kenbx 157 14 phenotype phenotype NN cord-002530-ao7kenbx 157 15 as as IN cord-002530-ao7kenbx 157 16 VCP VCP NNP cord-002530-ao7kenbx 157 17 siRNA siRNA NNP cord-002530-ao7kenbx 157 18 knockdown knockdown NN cord-002530-ao7kenbx 157 19 , , , cord-002530-ao7kenbx 157 20 cells cell NNS cord-002530-ao7kenbx 157 21 were be VBD cord-002530-ao7kenbx 157 22 pretreated pretreate VBN cord-002530-ao7kenbx 157 23 with with IN cord-002530-ao7kenbx 157 24 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 157 25 or or CC cord-002530-ao7kenbx 157 26 DMSO DMSO NNP cord-002530-ao7kenbx 157 27 and and CC cord-002530-ao7kenbx 157 28 infected infect VBN cord-002530-ao7kenbx 157 29 at at IN cord-002530-ao7kenbx 157 30 high high JJ cord-002530-ao7kenbx 157 31 MOI MOI NNP cord-002530-ao7kenbx 157 32 with with IN cord-002530-ao7kenbx 157 33 HCMV HCMV NNP cord-002530-ao7kenbx 157 34 . . . cord-002530-ao7kenbx 158 1 Total total JJ cord-002530-ao7kenbx 158 2 protein protein NN cord-002530-ao7kenbx 158 3 was be VBD cord-002530-ao7kenbx 158 4 harvested harvest VBN cord-002530-ao7kenbx 158 5 every every DT cord-002530-ao7kenbx 158 6 24 24 CD cord-002530-ao7kenbx 158 7 hours hour NNS cord-002530-ao7kenbx 158 8 for for IN cord-002530-ao7kenbx 158 9 a a DT cord-002530-ao7kenbx 158 10 total total NN cord-002530-ao7kenbx 158 11 of of IN cord-002530-ao7kenbx 158 12 five five CD cord-002530-ao7kenbx 158 13 days day NNS cord-002530-ao7kenbx 158 14 and and CC cord-002530-ao7kenbx 158 15 subjected subject VBN cord-002530-ao7kenbx 158 16 to to IN cord-002530-ao7kenbx 158 17 western western JJ cord-002530-ao7kenbx 158 18 blot blot NN cord-002530-ao7kenbx 158 19 analysis analysis NN cord-002530-ao7kenbx 158 20 . . . cord-002530-ao7kenbx 159 1 As as IN cord-002530-ao7kenbx 159 2 shown show VBN cord-002530-ao7kenbx 159 3 in in IN cord-002530-ao7kenbx 159 4 Fig Fig NNP cord-002530-ao7kenbx 159 5 10A 10a NN cord-002530-ao7kenbx 159 6 , , , cord-002530-ao7kenbx 159 7 treatment treatment NN cord-002530-ao7kenbx 159 8 with with IN cord-002530-ao7kenbx 159 9 1μM 1μm CD cord-002530-ao7kenbx 159 10 of of IN cord-002530-ao7kenbx 159 11 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 159 12 recapitulated recapitulate VBD cord-002530-ao7kenbx 159 13 the the DT cord-002530-ao7kenbx 159 14 phenotypic phenotypic JJ cord-002530-ao7kenbx 159 15 effects effect NNS cord-002530-ao7kenbx 159 16 of of IN cord-002530-ao7kenbx 159 17 VCP VCP NNP cord-002530-ao7kenbx 159 18 siRNA siRNA NNP cord-002530-ao7kenbx 159 19 , , , cord-002530-ao7kenbx 159 20 with with IN cord-002530-ao7kenbx 159 21 loss loss NN cord-002530-ao7kenbx 159 22 of of IN cord-002530-ao7kenbx 159 23 IE2 ie2 JJ cord-002530-ao7kenbx 159 24 transcript transcript NN cord-002530-ao7kenbx 159 25 and and CC cord-002530-ao7kenbx 159 26 protein protein NN cord-002530-ao7kenbx 159 27 expression expression NN cord-002530-ao7kenbx 159 28 . . . cord-002530-ao7kenbx 160 1 In in IN cord-002530-ao7kenbx 160 2 contrast contrast NN cord-002530-ao7kenbx 160 3 to to IN cord-002530-ao7kenbx 160 4 siRNA siRNA NNP cord-002530-ao7kenbx 160 5 knockdown knockdown NN cord-002530-ao7kenbx 160 6 of of IN cord-002530-ao7kenbx 160 7 VCP VCP NNP cord-002530-ao7kenbx 160 8 , , , cord-002530-ao7kenbx 160 9 treatment treatment NN cord-002530-ao7kenbx 160 10 with with IN cord-002530-ao7kenbx 160 11 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 160 12 did do VBD cord-002530-ao7kenbx 160 13 not not RB cord-002530-ao7kenbx 160 14 result result VB cord-002530-ao7kenbx 160 15 in in IN cord-002530-ao7kenbx 160 16 increased increase VBN cord-002530-ao7kenbx 160 17 IE1 ie1 NN cord-002530-ao7kenbx 160 18 expression expression NN cord-002530-ao7kenbx 160 19 . . . cord-002530-ao7kenbx 161 1 This this DT cord-002530-ao7kenbx 161 2 may may MD cord-002530-ao7kenbx 161 3 be be VB cord-002530-ao7kenbx 161 4 due due JJ cord-002530-ao7kenbx 161 5 to to TO cord-002530-ao7kenbx 161 6 additional additional VB cord-002530-ao7kenbx 161 7 off off RP cord-002530-ao7kenbx 161 8 target target NN cord-002530-ao7kenbx 161 9 effects effect NNS cord-002530-ao7kenbx 161 10 of of IN cord-002530-ao7kenbx 161 11 the the DT cord-002530-ao7kenbx 161 12 drug drug NN cord-002530-ao7kenbx 161 13 compared compare VBN cord-002530-ao7kenbx 161 14 to to IN cord-002530-ao7kenbx 161 15 siRNA siRNA NNP cord-002530-ao7kenbx 161 16 knockdown knockdown NNP cord-002530-ao7kenbx 161 17 or or CC cord-002530-ao7kenbx 161 18 a a DT cord-002530-ao7kenbx 161 19 consequence consequence NN cord-002530-ao7kenbx 161 20 of of IN cord-002530-ao7kenbx 161 21 inhibiting inhibit VBG cord-002530-ao7kenbx 161 22 the the DT cord-002530-ao7kenbx 161 23 activity activity NN cord-002530-ao7kenbx 161 24 of of IN cord-002530-ao7kenbx 161 25 VCP vcp NN cord-002530-ao7kenbx 161 26 compared compare VBN cord-002530-ao7kenbx 161 27 to to IN cord-002530-ao7kenbx 161 28 directly directly RB cord-002530-ao7kenbx 161 29 knocking knock VBG cord-002530-ao7kenbx 161 30 down down RP cord-002530-ao7kenbx 161 31 the the DT cord-002530-ao7kenbx 161 32 protein protein NN cord-002530-ao7kenbx 161 33 . . . cord-002530-ao7kenbx 162 1 Next next RB cord-002530-ao7kenbx 162 2 , , , cord-002530-ao7kenbx 162 3 we -PRON- PRP cord-002530-ao7kenbx 162 4 compared compare VBD cord-002530-ao7kenbx 162 5 the the DT cord-002530-ao7kenbx 162 6 antiviral antiviral JJ cord-002530-ao7kenbx 162 7 activity activity NN cord-002530-ao7kenbx 162 8 of of IN cord-002530-ao7kenbx 162 9 NMS-873 nms-873 NN cord-002530-ao7kenbx 162 10 to to IN cord-002530-ao7kenbx 162 11 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 162 12 , , , cord-002530-ao7kenbx 162 13 currently currently RB cord-002530-ao7kenbx 162 14 the the DT cord-002530-ao7kenbx 162 15 most most RBS cord-002530-ao7kenbx 162 16 commonly commonly RB cord-002530-ao7kenbx 162 17 used use VBN cord-002530-ao7kenbx 162 18 HCMV HCMV NNP cord-002530-ao7kenbx 162 19 antiviral antiviral JJ cord-002530-ao7kenbx 162 20 . . . cord-002530-ao7kenbx 163 1 Primary primary JJ cord-002530-ao7kenbx 163 2 human human JJ cord-002530-ao7kenbx 163 3 fibroblast fibroblast NN cord-002530-ao7kenbx 163 4 cells cell NNS cord-002530-ao7kenbx 163 5 were be VBD cord-002530-ao7kenbx 163 6 pretreated pretreate VBN cord-002530-ao7kenbx 163 7 with with IN cord-002530-ao7kenbx 163 8 different different JJ cord-002530-ao7kenbx 163 9 concentrations concentration NNS cord-002530-ao7kenbx 163 10 of of IN cord-002530-ao7kenbx 163 11 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 163 12 , , , cord-002530-ao7kenbx 163 13 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 163 14 or or CC cord-002530-ao7kenbx 163 15 DMSO DMSO NNP cord-002530-ao7kenbx 163 16 control control NN cord-002530-ao7kenbx 163 17 , , , cord-002530-ao7kenbx 163 18 with with IN cord-002530-ao7kenbx 163 19 cells cell NNS cord-002530-ao7kenbx 163 20 and and CC cord-002530-ao7kenbx 163 21 supernatant supernatant VBN cord-002530-ao7kenbx 163 22 harvested harvest VBN cord-002530-ao7kenbx 163 23 seven seven CD cord-002530-ao7kenbx 163 24 days day NNS cord-002530-ao7kenbx 163 25 post post NN cord-002530-ao7kenbx 163 26 infection infection NN cord-002530-ao7kenbx 163 27 for for IN cord-002530-ao7kenbx 163 28 plaque plaque NN cord-002530-ao7kenbx 163 29 assay assay NN cord-002530-ao7kenbx 163 30 . . . cord-002530-ao7kenbx 164 1 As as IN cord-002530-ao7kenbx 164 2 shown show VBN cord-002530-ao7kenbx 164 3 in in IN cord-002530-ao7kenbx 164 4 Fig Fig NNP cord-002530-ao7kenbx 164 5 10B 10B NNP cord-002530-ao7kenbx 164 6 , , , cord-002530-ao7kenbx 164 7 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 164 8 and and CC cord-002530-ao7kenbx 164 9 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 164 10 clearly clearly RB cord-002530-ao7kenbx 164 11 inhibited inhibit VBD cord-002530-ao7kenbx 164 12 the the DT cord-002530-ao7kenbx 164 13 production production NN cord-002530-ao7kenbx 164 14 of of IN cord-002530-ao7kenbx 164 15 infectious infectious JJ cord-002530-ao7kenbx 164 16 virus virus NN cord-002530-ao7kenbx 164 17 . . . cord-002530-ao7kenbx 165 1 However however RB cord-002530-ao7kenbx 165 2 , , , cord-002530-ao7kenbx 165 3 NMS-873 nms-873 PRP cord-002530-ao7kenbx 165 4 displayed display VBD cord-002530-ao7kenbx 165 5 a a DT cord-002530-ao7kenbx 165 6 higher high JJR cord-002530-ao7kenbx 165 7 level level NN cord-002530-ao7kenbx 165 8 of of IN cord-002530-ao7kenbx 165 9 potency potency NN cord-002530-ao7kenbx 165 10 at at IN cord-002530-ao7kenbx 165 11 ten ten RB cord-002530-ao7kenbx 165 12 - - HYPH cord-002530-ao7kenbx 165 13 fold fold VB cord-002530-ao7kenbx 165 14 lower low JJR cord-002530-ao7kenbx 165 15 concentrations concentration NNS cord-002530-ao7kenbx 165 16 , , , cord-002530-ao7kenbx 165 17 with with IN cord-002530-ao7kenbx 165 18 an an DT cord-002530-ao7kenbx 165 19 IC50 IC50 NNP cord-002530-ao7kenbx 165 20 of of IN cord-002530-ao7kenbx 165 21 0.13 0.13 CD cord-002530-ao7kenbx 165 22 μM μm CD cord-002530-ao7kenbx 165 23 compared compare VBN cord-002530-ao7kenbx 165 24 to to IN cord-002530-ao7kenbx 165 25 1.3 1.3 CD cord-002530-ao7kenbx 165 26 μM μm NN cord-002530-ao7kenbx 165 27 for for IN cord-002530-ao7kenbx 165 28 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 165 29 . . . cord-002530-ao7kenbx 166 1 Co co NN cord-002530-ao7kenbx 166 2 - - JJ cord-002530-ao7kenbx 166 3 treating treat VBG cord-002530-ao7kenbx 166 4 cells cell NNS cord-002530-ao7kenbx 166 5 with with IN cord-002530-ao7kenbx 166 6 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 166 7 at at IN cord-002530-ao7kenbx 166 8 the the DT cord-002530-ao7kenbx 166 9 same same JJ cord-002530-ao7kenbx 166 10 time time NN cord-002530-ao7kenbx 166 11 as as IN cord-002530-ao7kenbx 166 12 infection infection NN cord-002530-ao7kenbx 166 13 also also RB cord-002530-ao7kenbx 166 14 resulted result VBD cord-002530-ao7kenbx 166 15 in in IN cord-002530-ao7kenbx 166 16 reduced reduce VBN cord-002530-ao7kenbx 166 17 IE2 ie2 NN cord-002530-ao7kenbx 166 18 levels level NNS cord-002530-ao7kenbx 166 19 and and CC cord-002530-ao7kenbx 166 20 a a DT cord-002530-ao7kenbx 166 21 similar similar JJ cord-002530-ao7kenbx 166 22 reduction reduction NN cord-002530-ao7kenbx 166 23 in in IN cord-002530-ao7kenbx 166 24 infectious infectious JJ cord-002530-ao7kenbx 166 25 virus virus NN cord-002530-ao7kenbx 166 26 ( ( -LRB- cord-002530-ao7kenbx 166 27 Fig Fig NNP cord-002530-ao7kenbx 166 28 10C 10c CD cord-002530-ao7kenbx 166 29 and and CC cord-002530-ao7kenbx 166 30 S10A S10A NNP cord-002530-ao7kenbx 166 31 Fig Fig NNP cord-002530-ao7kenbx 166 32 ) ) -RRB- cord-002530-ao7kenbx 166 33 . . . cord-002530-ao7kenbx 167 1 In in IN cord-002530-ao7kenbx 167 2 contrast contrast NN cord-002530-ao7kenbx 167 3 , , , cord-002530-ao7kenbx 167 4 treating treat VBG cord-002530-ao7kenbx 167 5 cells cell NNS cord-002530-ao7kenbx 167 6 24 24 CD cord-002530-ao7kenbx 167 7 HPI HPI NNP cord-002530-ao7kenbx 167 8 did do VBD cord-002530-ao7kenbx 167 9 not not RB cord-002530-ao7kenbx 167 10 reduce reduce VB cord-002530-ao7kenbx 167 11 IE2 ie2 JJ cord-002530-ao7kenbx 167 12 expression expression NN cord-002530-ao7kenbx 167 13 or or CC cord-002530-ao7kenbx 167 14 virus virus NN cord-002530-ao7kenbx 167 15 production production NN cord-002530-ao7kenbx 167 16 to to IN cord-002530-ao7kenbx 167 17 the the DT cord-002530-ao7kenbx 167 18 same same JJ cord-002530-ao7kenbx 167 19 extent extent NN cord-002530-ao7kenbx 167 20 ( ( -LRB- cord-002530-ao7kenbx 167 21 Fig Fig NNP cord-002530-ao7kenbx 167 22 10C 10c CD cord-002530-ao7kenbx 167 23 and and CC cord-002530-ao7kenbx 167 24 S10B S10B NNP cord-002530-ao7kenbx 167 25 _SP cord-002530-ao7kenbx 167 26 Fig Fig NNP cord-002530-ao7kenbx 167 27 ) ) -RRB- cord-002530-ao7kenbx 167 28 . . . cord-002530-ao7kenbx 168 1 While while IN cord-002530-ao7kenbx 168 2 immediate immediate JJ cord-002530-ao7kenbx 168 3 early early JJ cord-002530-ao7kenbx 168 4 and and CC cord-002530-ao7kenbx 168 5 early early JJ cord-002530-ao7kenbx 168 6 viral viral JJ cord-002530-ao7kenbx 168 7 gene gene NN cord-002530-ao7kenbx 168 8 expression expression NN cord-002530-ao7kenbx 168 9 was be VBD cord-002530-ao7kenbx 168 10 not not RB cord-002530-ao7kenbx 168 11 substantially substantially RB cord-002530-ao7kenbx 168 12 affected affect VBN cord-002530-ao7kenbx 168 13 by by IN cord-002530-ao7kenbx 168 14 treatment treatment NN cord-002530-ao7kenbx 168 15 of of IN cord-002530-ao7kenbx 168 16 cells cell NNS cord-002530-ao7kenbx 168 17 with with IN cord-002530-ao7kenbx 168 18 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 168 19 at at IN cord-002530-ao7kenbx 168 20 24 24 CD cord-002530-ao7kenbx 168 21 hour hour NN cord-002530-ao7kenbx 168 22 post post NN cord-002530-ao7kenbx 168 23 infection infection NN cord-002530-ao7kenbx 168 24 , , , cord-002530-ao7kenbx 168 25 expression expression NN cord-002530-ao7kenbx 168 26 of of IN cord-002530-ao7kenbx 168 27 the the DT cord-002530-ao7kenbx 168 28 late late JJ cord-002530-ao7kenbx 168 29 gene gene NN cord-002530-ao7kenbx 168 30 pp28 pp28 NNP cord-002530-ao7kenbx 168 31 was be VBD cord-002530-ao7kenbx 168 32 substantially substantially RB cord-002530-ao7kenbx 168 33 reduced reduce VBN cord-002530-ao7kenbx 168 34 , , , cord-002530-ao7kenbx 168 35 with with IN cord-002530-ao7kenbx 168 36 infectious infectious JJ cord-002530-ao7kenbx 168 37 virus virus NN cord-002530-ao7kenbx 168 38 reduced reduce VBD cord-002530-ao7kenbx 168 39 100 100 CD cord-002530-ao7kenbx 168 40 fold fold NN cord-002530-ao7kenbx 168 41 , , , cord-002530-ao7kenbx 168 42 suggesting suggest VBG cord-002530-ao7kenbx 168 43 VCP VCP NNP cord-002530-ao7kenbx 168 44 may may MD cord-002530-ao7kenbx 168 45 also also RB cord-002530-ao7kenbx 168 46 be be VB cord-002530-ao7kenbx 168 47 involved involve VBN cord-002530-ao7kenbx 168 48 in in IN cord-002530-ao7kenbx 168 49 late late JJ cord-002530-ao7kenbx 168 50 processes process NNS cord-002530-ao7kenbx 168 51 of of IN cord-002530-ao7kenbx 168 52 virus virus NN cord-002530-ao7kenbx 168 53 replication replication NN cord-002530-ao7kenbx 168 54 . . . cord-002530-ao7kenbx 169 1 This this DT cord-002530-ao7kenbx 169 2 is be VBZ cord-002530-ao7kenbx 169 3 consistent consistent JJ cord-002530-ao7kenbx 169 4 with with IN cord-002530-ao7kenbx 169 5 the the DT cord-002530-ao7kenbx 169 6 pleiotropic pleiotropic JJ cord-002530-ao7kenbx 169 7 nature nature NN cord-002530-ao7kenbx 169 8 of of IN cord-002530-ao7kenbx 169 9 VCP VCP NNP cord-002530-ao7kenbx 169 10 and and CC cord-002530-ao7kenbx 169 11 its -PRON- PRP$ cord-002530-ao7kenbx 169 12 potential potential NN cord-002530-ao7kenbx 169 13 to to TO cord-002530-ao7kenbx 169 14 affect affect VB cord-002530-ao7kenbx 169 15 HCMV HCMV NNP cord-002530-ao7kenbx 169 16 replication replication NN cord-002530-ao7kenbx 169 17 in in IN cord-002530-ao7kenbx 169 18 a a DT cord-002530-ao7kenbx 169 19 multitude multitude NN cord-002530-ao7kenbx 169 20 of of IN cord-002530-ao7kenbx 169 21 ways way NNS cord-002530-ao7kenbx 169 22 . . . cord-002530-ao7kenbx 170 1 Treatment treatment NN cord-002530-ao7kenbx 170 2 with with IN cord-002530-ao7kenbx 170 3 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 170 4 also also RB cord-002530-ao7kenbx 170 5 showed show VBD cord-002530-ao7kenbx 170 6 little little JJ cord-002530-ao7kenbx 170 7 toxicity toxicity NN cord-002530-ao7kenbx 170 8 at at IN cord-002530-ao7kenbx 170 9 effective effective JJ cord-002530-ao7kenbx 170 10 concentrations concentration NNS cord-002530-ao7kenbx 170 11 ( ( -LRB- cord-002530-ao7kenbx 170 12 Fig Fig NNP cord-002530-ao7kenbx 170 13 10D 10d CD cord-002530-ao7kenbx 170 14 ) ) -RRB- cord-002530-ao7kenbx 170 15 , , , cord-002530-ao7kenbx 170 16 suggesting suggest VBG cord-002530-ao7kenbx 170 17 NMS-873 nms-873 RB cord-002530-ao7kenbx 170 18 and and CC cord-002530-ao7kenbx 170 19 small small JJ cord-002530-ao7kenbx 170 20 molecule molecule NN cord-002530-ao7kenbx 170 21 inhibitors inhibitor NNS cord-002530-ao7kenbx 170 22 of of IN cord-002530-ao7kenbx 170 23 VCP VCP NNP cord-002530-ao7kenbx 170 24 show show VBP cord-002530-ao7kenbx 170 25 significant significant JJ cord-002530-ao7kenbx 170 26 potential potential NN cord-002530-ao7kenbx 170 27 as as IN cord-002530-ao7kenbx 170 28 HCMV HCMV NNP cord-002530-ao7kenbx 170 29 antiviral antiviral JJ cord-002530-ao7kenbx 170 30 therapies therapy NNS cord-002530-ao7kenbx 170 31 . . . cord-002530-ao7kenbx 171 1 VCP VCP NNP cord-002530-ao7kenbx 171 2 plays play VBZ cord-002530-ao7kenbx 171 3 a a DT cord-002530-ao7kenbx 171 4 pivotal pivotal JJ cord-002530-ao7kenbx 171 5 role role NN cord-002530-ao7kenbx 171 6 in in IN cord-002530-ao7kenbx 171 7 ubiquitin ubiquitin NN cord-002530-ao7kenbx 171 8 - - HYPH cord-002530-ao7kenbx 171 9 dependent dependent JJ cord-002530-ao7kenbx 171 10 signaling signal VBG cord-002530-ao7kenbx 171 11 through through IN cord-002530-ao7kenbx 171 12 remodeling remodel VBG cord-002530-ao7kenbx 171 13 target target NN cord-002530-ao7kenbx 171 14 proteins protein NNS cord-002530-ao7kenbx 171 15 , , , cord-002530-ao7kenbx 171 16 often often RB cord-002530-ao7kenbx 171 17 leading lead VBG cord-002530-ao7kenbx 171 18 to to IN cord-002530-ao7kenbx 171 19 proteosomal proteosomal JJ cord-002530-ao7kenbx 171 20 degradation degradation NN cord-002530-ao7kenbx 171 21 . . . cord-002530-ao7kenbx 172 1 As as IN cord-002530-ao7kenbx 172 2 such such JJ cord-002530-ao7kenbx 172 3 it -PRON- PRP cord-002530-ao7kenbx 172 4 is be VBZ cord-002530-ao7kenbx 172 5 linked link VBN cord-002530-ao7kenbx 172 6 to to IN cord-002530-ao7kenbx 172 7 a a DT cord-002530-ao7kenbx 172 8 wide wide JJ cord-002530-ao7kenbx 172 9 range range NN cord-002530-ao7kenbx 172 10 of of IN cord-002530-ao7kenbx 172 11 biological biological JJ cord-002530-ao7kenbx 172 12 functions function NNS cord-002530-ao7kenbx 172 13 , , , cord-002530-ao7kenbx 172 14 including include VBG cord-002530-ao7kenbx 172 15 protein protein NN cord-002530-ao7kenbx 172 16 quality quality NN cord-002530-ao7kenbx 172 17 control control NN cord-002530-ao7kenbx 172 18 , , , cord-002530-ao7kenbx 172 19 autophagy autophagy NN cord-002530-ao7kenbx 172 20 , , , cord-002530-ao7kenbx 172 21 chromatin chromatin NN cord-002530-ao7kenbx 172 22 remodeling remodeling NN cord-002530-ao7kenbx 172 23 and and CC cord-002530-ao7kenbx 172 24 more more RBR cord-002530-ao7kenbx 172 25 recently recently RB cord-002530-ao7kenbx 172 26 RNA RNA NNP cord-002530-ao7kenbx 172 27 processing processing NN cord-002530-ao7kenbx 172 28 [ [ -LRB- cord-002530-ao7kenbx 172 29 21 21 CD cord-002530-ao7kenbx 172 30 ] ] -RRB- cord-002530-ao7kenbx 172 31 . . . cord-002530-ao7kenbx 173 1 Following follow VBG cord-002530-ao7kenbx 173 2 systematic systematic JJ cord-002530-ao7kenbx 173 3 screening screening NN cord-002530-ao7kenbx 173 4 of of IN cord-002530-ao7kenbx 173 5 host host NN cord-002530-ao7kenbx 173 6 genes gene NNS cord-002530-ao7kenbx 173 7 involved involve VBN cord-002530-ao7kenbx 173 8 in in IN cord-002530-ao7kenbx 173 9 membrane membrane NN cord-002530-ao7kenbx 173 10 organization organization NN cord-002530-ao7kenbx 173 11 , , , cord-002530-ao7kenbx 173 12 we -PRON- PRP cord-002530-ao7kenbx 173 13 identified identify VBD cord-002530-ao7kenbx 173 14 VCP VCP NNP cord-002530-ao7kenbx 173 15 as as IN cord-002530-ao7kenbx 173 16 a a DT cord-002530-ao7kenbx 173 17 critical critical JJ cord-002530-ao7kenbx 173 18 host host NN cord-002530-ao7kenbx 173 19 factor factor NN cord-002530-ao7kenbx 173 20 for for IN cord-002530-ao7kenbx 173 21 HCMV HCMV NNP cord-002530-ao7kenbx 173 22 replication replication NN cord-002530-ao7kenbx 173 23 . . . cord-002530-ao7kenbx 174 1 Further further JJ cord-002530-ao7kenbx 174 2 characterization characterization NN cord-002530-ao7kenbx 174 3 demonstrated demonstrate VBD cord-002530-ao7kenbx 174 4 that that IN cord-002530-ao7kenbx 174 5 knockdown knockdown NN cord-002530-ao7kenbx 174 6 of of IN cord-002530-ao7kenbx 174 7 VCP VCP NNP cord-002530-ao7kenbx 174 8 resulted result VBD cord-002530-ao7kenbx 174 9 in in IN cord-002530-ao7kenbx 174 10 an an DT cord-002530-ao7kenbx 174 11 initial initial JJ cord-002530-ao7kenbx 174 12 increase increase NN cord-002530-ao7kenbx 174 13 in in IN cord-002530-ao7kenbx 174 14 MIE MIE NNP cord-002530-ao7kenbx 174 15 transcription transcription NN cord-002530-ao7kenbx 174 16 , , , cord-002530-ao7kenbx 174 17 followed follow VBN cord-002530-ao7kenbx 174 18 by by IN cord-002530-ao7kenbx 174 19 a a DT cord-002530-ao7kenbx 174 20 substantial substantial JJ cord-002530-ao7kenbx 174 21 reduction reduction NN cord-002530-ao7kenbx 174 22 in in IN cord-002530-ao7kenbx 174 23 the the DT cord-002530-ao7kenbx 174 24 expression expression NN cord-002530-ao7kenbx 174 25 of of IN cord-002530-ao7kenbx 174 26 the the DT cord-002530-ao7kenbx 174 27 major major JJ cord-002530-ao7kenbx 174 28 immediate immediate JJ cord-002530-ao7kenbx 174 29 early early JJ cord-002530-ao7kenbx 174 30 transcript transcript NN cord-002530-ao7kenbx 174 31 IE2 ie2 NN cord-002530-ao7kenbx 174 32 . . . cord-002530-ao7kenbx 175 1 Strikingly strikingly RB cord-002530-ao7kenbx 175 2 , , , cord-002530-ao7kenbx 175 3 despite despite IN cord-002530-ao7kenbx 175 4 being be VBG cord-002530-ao7kenbx 175 5 expressed express VBN cord-002530-ao7kenbx 175 6 from from IN cord-002530-ao7kenbx 175 7 the the DT cord-002530-ao7kenbx 175 8 same same JJ cord-002530-ao7kenbx 175 9 primary primary JJ cord-002530-ao7kenbx 175 10 transcript transcript NN cord-002530-ao7kenbx 175 11 , , , cord-002530-ao7kenbx 175 12 IE1 ie1 NN cord-002530-ao7kenbx 175 13 levels level NNS cord-002530-ao7kenbx 175 14 increased increase VBD cord-002530-ao7kenbx 175 15 following follow VBG cord-002530-ao7kenbx 175 16 VCP VCP NNP cord-002530-ao7kenbx 175 17 knockdown knockdown NN cord-002530-ao7kenbx 175 18 . . . cord-002530-ao7kenbx 176 1 Our -PRON- PRP$ cord-002530-ao7kenbx 176 2 data datum NNS cord-002530-ao7kenbx 176 3 also also RB cord-002530-ao7kenbx 176 4 suggests suggest VBZ cord-002530-ao7kenbx 176 5 that that IN cord-002530-ao7kenbx 176 6 VCP VCP NNP cord-002530-ao7kenbx 176 7 plays play VBZ cord-002530-ao7kenbx 176 8 a a DT cord-002530-ao7kenbx 176 9 role role NN cord-002530-ao7kenbx 176 10 during during IN cord-002530-ao7kenbx 176 11 late late JJ cord-002530-ao7kenbx 176 12 stages stage NNS cord-002530-ao7kenbx 176 13 of of IN cord-002530-ao7kenbx 176 14 virus virus NN cord-002530-ao7kenbx 176 15 replication replication NN cord-002530-ao7kenbx 176 16 as as IN cord-002530-ao7kenbx 176 17 inhibition inhibition NN cord-002530-ao7kenbx 176 18 of of IN cord-002530-ao7kenbx 176 19 VCP VCP NNP cord-002530-ao7kenbx 176 20 24 24 CD cord-002530-ao7kenbx 176 21 HPI HPI NNP cord-002530-ao7kenbx 176 22 did do VBD cord-002530-ao7kenbx 176 23 not not RB cord-002530-ao7kenbx 176 24 substantially substantially RB cord-002530-ao7kenbx 176 25 affect affect VB cord-002530-ao7kenbx 176 26 IE2 ie2 JJ cord-002530-ao7kenbx 176 27 expression expression NN cord-002530-ao7kenbx 176 28 but but CC cord-002530-ao7kenbx 176 29 still still RB cord-002530-ao7kenbx 176 30 resulted result VBD cord-002530-ao7kenbx 176 31 in in IN cord-002530-ao7kenbx 176 32 a a DT cord-002530-ao7kenbx 176 33 two two CD cord-002530-ao7kenbx 176 34 - - HYPH cord-002530-ao7kenbx 176 35 log log NN cord-002530-ao7kenbx 176 36 reduction reduction NN cord-002530-ao7kenbx 176 37 in in IN cord-002530-ao7kenbx 176 38 infectious infectious JJ cord-002530-ao7kenbx 176 39 virus virus NN cord-002530-ao7kenbx 176 40 . . . cord-002530-ao7kenbx 177 1 Given give VBN cord-002530-ao7kenbx 177 2 the the DT cord-002530-ao7kenbx 177 3 functionally functionally RB cord-002530-ao7kenbx 177 4 pleotropic pleotropic JJ cord-002530-ao7kenbx 177 5 nature nature NN cord-002530-ao7kenbx 177 6 of of IN cord-002530-ao7kenbx 177 7 VCP VCP NNP cord-002530-ao7kenbx 177 8 , , , cord-002530-ao7kenbx 177 9 it -PRON- PRP cord-002530-ao7kenbx 177 10 is be VBZ cord-002530-ao7kenbx 177 11 unsurprising unsurprising JJ cord-002530-ao7kenbx 177 12 that that IN cord-002530-ao7kenbx 177 13 knockdown knockdown NN cord-002530-ao7kenbx 177 14 results result NNS cord-002530-ao7kenbx 177 15 in in IN cord-002530-ao7kenbx 177 16 multifactorial multifactorial JJ cord-002530-ao7kenbx 177 17 effects effect NNS cord-002530-ao7kenbx 177 18 on on IN cord-002530-ao7kenbx 177 19 the the DT cord-002530-ao7kenbx 177 20 virus virus NN cord-002530-ao7kenbx 177 21 and and CC cord-002530-ao7kenbx 177 22 potentially potentially RB cord-002530-ao7kenbx 177 23 reflects reflect VBZ cord-002530-ao7kenbx 177 24 the the DT cord-002530-ao7kenbx 177 25 diverse diverse JJ cord-002530-ao7kenbx 177 26 roles role NNS cord-002530-ao7kenbx 177 27 of of IN cord-002530-ao7kenbx 177 28 ubiquitin ubiquitin JJ cord-002530-ao7kenbx 177 29 modulation modulation NN cord-002530-ao7kenbx 177 30 and and CC cord-002530-ao7kenbx 177 31 signaling signal VBG cord-002530-ao7kenbx 177 32 during during IN cord-002530-ao7kenbx 177 33 virus virus NN cord-002530-ao7kenbx 177 34 infection infection NN cord-002530-ao7kenbx 177 35 . . . cord-002530-ao7kenbx 178 1 Viral viral JJ cord-002530-ao7kenbx 178 2 gene gene NN cord-002530-ao7kenbx 178 3 expression expression NN cord-002530-ao7kenbx 178 4 during during IN cord-002530-ao7kenbx 178 5 HCMV HCMV NNP cord-002530-ao7kenbx 178 6 replication replication NN cord-002530-ao7kenbx 178 7 occurs occur VBZ cord-002530-ao7kenbx 178 8 through through IN cord-002530-ao7kenbx 178 9 a a DT cord-002530-ao7kenbx 178 10 tightly tightly RB cord-002530-ao7kenbx 178 11 regulated regulate VBN cord-002530-ao7kenbx 178 12 cascade cascade NN cord-002530-ao7kenbx 178 13 mechanism mechanism NN cord-002530-ao7kenbx 178 14 with with IN cord-002530-ao7kenbx 178 15 expression expression NN cord-002530-ao7kenbx 178 16 of of IN cord-002530-ao7kenbx 178 17 the the DT cord-002530-ao7kenbx 178 18 MIE MIE NNP cord-002530-ao7kenbx 178 19 genes gene NNS cord-002530-ao7kenbx 178 20 IE1 IE1 NNP cord-002530-ao7kenbx 178 21 and and CC cord-002530-ao7kenbx 178 22 , , , cord-002530-ao7kenbx 178 23 in in IN cord-002530-ao7kenbx 178 24 particular particular JJ cord-002530-ao7kenbx 178 25 , , , cord-002530-ao7kenbx 178 26 IE2 ie2 JJ cord-002530-ao7kenbx 178 27 , , , cord-002530-ao7kenbx 178 28 required require VBN cord-002530-ao7kenbx 178 29 for for IN cord-002530-ao7kenbx 178 30 transactivation transactivation NN cord-002530-ao7kenbx 178 31 of of IN cord-002530-ao7kenbx 178 32 early early JJ cord-002530-ao7kenbx 178 33 viral viral JJ cord-002530-ao7kenbx 178 34 genes gene NNS cord-002530-ao7kenbx 178 35 and and CC cord-002530-ao7kenbx 178 36 subsequent subsequent JJ cord-002530-ao7kenbx 178 37 late late JJ cord-002530-ao7kenbx 178 38 viral viral JJ cord-002530-ao7kenbx 178 39 gene gene NN cord-002530-ao7kenbx 178 40 expression expression NN cord-002530-ao7kenbx 178 41 . . . cord-002530-ao7kenbx 179 1 Due due IN cord-002530-ao7kenbx 179 2 to to IN cord-002530-ao7kenbx 179 3 the the DT cord-002530-ao7kenbx 179 4 central central JJ cord-002530-ao7kenbx 179 5 role role NN cord-002530-ao7kenbx 179 6 of of IN cord-002530-ao7kenbx 179 7 the the DT cord-002530-ao7kenbx 179 8 MIE MIE NNP cord-002530-ao7kenbx 179 9 proteins protein NNS cord-002530-ao7kenbx 179 10 in in IN cord-002530-ao7kenbx 179 11 driving drive VBG cord-002530-ao7kenbx 179 12 replication replication NN cord-002530-ao7kenbx 179 13 of of IN cord-002530-ao7kenbx 179 14 the the DT cord-002530-ao7kenbx 179 15 virus virus NN cord-002530-ao7kenbx 179 16 they -PRON- PRP cord-002530-ao7kenbx 179 17 have have VBP cord-002530-ao7kenbx 179 18 been be VBN cord-002530-ao7kenbx 179 19 suggested suggest VBN cord-002530-ao7kenbx 179 20 to to TO cord-002530-ao7kenbx 179 21 play play VB cord-002530-ao7kenbx 179 22 a a DT cord-002530-ao7kenbx 179 23 pivotal pivotal JJ cord-002530-ao7kenbx 179 24 role role NN cord-002530-ao7kenbx 179 25 in in IN cord-002530-ao7kenbx 179 26 regulating regulate VBG cord-002530-ao7kenbx 179 27 the the DT cord-002530-ao7kenbx 179 28 balance balance NN cord-002530-ao7kenbx 179 29 between between IN cord-002530-ao7kenbx 179 30 productive productive JJ cord-002530-ao7kenbx 179 31 and and CC cord-002530-ao7kenbx 179 32 latent latent JJ cord-002530-ao7kenbx 179 33 infection infection NN cord-002530-ao7kenbx 179 34 . . . cord-002530-ao7kenbx 180 1 IE1 ie1 NN cord-002530-ao7kenbx 180 2 and and CC cord-002530-ao7kenbx 180 3 IE2 IE2 NNP cord-002530-ao7kenbx 180 4 are be VBP cord-002530-ao7kenbx 180 5 generated generate VBN cord-002530-ao7kenbx 180 6 from from IN cord-002530-ao7kenbx 180 7 the the DT cord-002530-ao7kenbx 180 8 same same JJ cord-002530-ao7kenbx 180 9 primary primary JJ cord-002530-ao7kenbx 180 10 transcript transcript NN cord-002530-ao7kenbx 180 11 by by IN cord-002530-ao7kenbx 180 12 alternative alternative JJ cord-002530-ao7kenbx 180 13 splicing splicing NN cord-002530-ao7kenbx 180 14 , , , cord-002530-ao7kenbx 180 15 sharing share VBG cord-002530-ao7kenbx 180 16 the the DT cord-002530-ao7kenbx 180 17 first first JJ cord-002530-ao7kenbx 180 18 three three CD cord-002530-ao7kenbx 180 19 exons exon NNS cord-002530-ao7kenbx 180 20 , , , cord-002530-ao7kenbx 180 21 while while IN cord-002530-ao7kenbx 180 22 splicing splice VBG cord-002530-ao7kenbx 180 23 to to IN cord-002530-ao7kenbx 180 24 independent independent JJ cord-002530-ao7kenbx 180 25 final final JJ cord-002530-ao7kenbx 180 26 exons exon NNS cord-002530-ao7kenbx 180 27 through through IN cord-002530-ao7kenbx 180 28 the the DT cord-002530-ao7kenbx 180 29 relatively relatively RB cord-002530-ao7kenbx 180 30 unusual unusual JJ cord-002530-ao7kenbx 180 31 process process NN cord-002530-ao7kenbx 180 32 of of IN cord-002530-ao7kenbx 180 33 terminal terminal NN cord-002530-ao7kenbx 180 34 exon exon NN cord-002530-ao7kenbx 180 35 skipping skip VBG cord-002530-ao7kenbx 180 36 [ [ -LRB- cord-002530-ao7kenbx 180 37 10 10 CD cord-002530-ao7kenbx 180 38 , , , cord-002530-ao7kenbx 180 39 12 12 CD cord-002530-ao7kenbx 180 40 ] ] -RRB- cord-002530-ao7kenbx 180 41 . . . cord-002530-ao7kenbx 181 1 Consistent consistent JJ cord-002530-ao7kenbx 181 2 with with IN cord-002530-ao7kenbx 181 3 previous previous JJ cord-002530-ao7kenbx 181 4 publications publication NNS cord-002530-ao7kenbx 181 5 [ [ -LRB- cord-002530-ao7kenbx 181 6 33 33 CD cord-002530-ao7kenbx 181 7 , , , cord-002530-ao7kenbx 181 8 34 34 CD cord-002530-ao7kenbx 181 9 ] ] -RRB- cord-002530-ao7kenbx 181 10 , , , cord-002530-ao7kenbx 181 11 our -PRON- PRP$ cord-002530-ao7kenbx 181 12 data datum NNS cord-002530-ao7kenbx 181 13 shows show VBZ cord-002530-ao7kenbx 181 14 that that IN cord-002530-ao7kenbx 181 15 IE1 ie1 NN cord-002530-ao7kenbx 181 16 expression expression NN cord-002530-ao7kenbx 181 17 levels level NNS cord-002530-ao7kenbx 181 18 increase increase VBP cord-002530-ao7kenbx 181 19 more more RBR cord-002530-ao7kenbx 181 20 rapidly rapidly RB cord-002530-ao7kenbx 181 21 than than IN cord-002530-ao7kenbx 181 22 IE2 ie2 NN cord-002530-ao7kenbx 181 23 , , , cord-002530-ao7kenbx 181 24 due due IN cord-002530-ao7kenbx 181 25 to to IN cord-002530-ao7kenbx 181 26 preferential preferential JJ cord-002530-ao7kenbx 181 27 splicing splicing NN cord-002530-ao7kenbx 181 28 to to IN cord-002530-ao7kenbx 181 29 the the DT cord-002530-ao7kenbx 181 30 IE1 IE1 NNP cord-002530-ao7kenbx 181 31 terminal terminal NN cord-002530-ao7kenbx 181 32 exon exon NN cord-002530-ao7kenbx 181 33 4 4 CD cord-002530-ao7kenbx 181 34 , , , cord-002530-ao7kenbx 181 35 resulting result VBG cord-002530-ao7kenbx 181 36 in in IN cord-002530-ao7kenbx 181 37 lower low JJR cord-002530-ao7kenbx 181 38 levels level NNS cord-002530-ao7kenbx 181 39 of of IN cord-002530-ao7kenbx 181 40 IE2 ie2 NN cord-002530-ao7kenbx 181 41 transcription transcription NN cord-002530-ao7kenbx 181 42 , , , cord-002530-ao7kenbx 181 43 which which WDT cord-002530-ao7kenbx 181 44 plateaus plateaus VBP cord-002530-ao7kenbx 181 45 between between IN cord-002530-ao7kenbx 181 46 12 12 CD cord-002530-ao7kenbx 181 47 and and CC cord-002530-ao7kenbx 181 48 24 24 CD cord-002530-ao7kenbx 181 49 HPI HPI NNP cord-002530-ao7kenbx 181 50 ( ( -LRB- cord-002530-ao7kenbx 181 51 S2 s2 NN cord-002530-ao7kenbx 181 52 , , , cord-002530-ao7kenbx 181 53 S3 S3 NNP cord-002530-ao7kenbx 181 54 and and CC cord-002530-ao7kenbx 181 55 S4 S4 NNP cord-002530-ao7kenbx 181 56 Figs Figs NNP cord-002530-ao7kenbx 181 57 ) ) -RRB- cord-002530-ao7kenbx 181 58 . . . cord-002530-ao7kenbx 182 1 As as IN cord-002530-ao7kenbx 182 2 infection infection NN cord-002530-ao7kenbx 182 3 progresses progress VBZ cord-002530-ao7kenbx 182 4 , , , cord-002530-ao7kenbx 182 5 splicing splice VBG cord-002530-ao7kenbx 182 6 to to IN cord-002530-ao7kenbx 182 7 IE2 ie2 NN cord-002530-ao7kenbx 182 8 terminal terminal NN cord-002530-ao7kenbx 182 9 exon exon NN cord-002530-ao7kenbx 182 10 5 5 CD cord-002530-ao7kenbx 182 11 increases increase NNS cord-002530-ao7kenbx 182 12 , , , cord-002530-ao7kenbx 182 13 with with IN cord-002530-ao7kenbx 182 14 a a DT cord-002530-ao7kenbx 182 15 corresponding corresponding JJ cord-002530-ao7kenbx 182 16 decrease decrease NN cord-002530-ao7kenbx 182 17 in in IN cord-002530-ao7kenbx 182 18 IE1 ie1 NN cord-002530-ao7kenbx 182 19 splicing splicing NN cord-002530-ao7kenbx 182 20 . . . cord-002530-ao7kenbx 183 1 Regulation regulation NN cord-002530-ao7kenbx 183 2 of of IN cord-002530-ao7kenbx 183 3 alternative alternative JJ cord-002530-ao7kenbx 183 4 splicing splicing NN cord-002530-ao7kenbx 183 5 of of IN cord-002530-ao7kenbx 183 6 the the DT cord-002530-ao7kenbx 183 7 MIE MIE NNP cord-002530-ao7kenbx 183 8 transcripts transcript NNS cord-002530-ao7kenbx 183 9 is be VBZ cord-002530-ao7kenbx 183 10 therefore therefore RB cord-002530-ao7kenbx 183 11 crucial crucial JJ cord-002530-ao7kenbx 183 12 for for IN cord-002530-ao7kenbx 183 13 determining determine VBG cord-002530-ao7kenbx 183 14 whether whether IN cord-002530-ao7kenbx 183 15 replication replication NN cord-002530-ao7kenbx 183 16 of of IN cord-002530-ao7kenbx 183 17 the the DT cord-002530-ao7kenbx 183 18 virus virus NN cord-002530-ao7kenbx 183 19 progresses progress VBZ cord-002530-ao7kenbx 183 20 , , , cord-002530-ao7kenbx 183 21 as as IN cord-002530-ao7kenbx 183 22 expression expression NN cord-002530-ao7kenbx 183 23 of of IN cord-002530-ao7kenbx 183 24 IE2 ie2 NN cord-002530-ao7kenbx 183 25 is be VBZ cord-002530-ao7kenbx 183 26 dependent dependent JJ cord-002530-ao7kenbx 183 27 on on IN cord-002530-ao7kenbx 183 28 this this DT cord-002530-ao7kenbx 183 29 switch switch NN cord-002530-ao7kenbx 183 30 in in IN cord-002530-ao7kenbx 183 31 splicing splicing NN cord-002530-ao7kenbx 183 32 . . . cord-002530-ao7kenbx 184 1 Although although IN cord-002530-ao7kenbx 184 2 the the DT cord-002530-ao7kenbx 184 3 timing timing NN cord-002530-ao7kenbx 184 4 and and CC cord-002530-ao7kenbx 184 5 precise precise JJ cord-002530-ao7kenbx 184 6 splicing splicing NN cord-002530-ao7kenbx 184 7 pattern pattern NN cord-002530-ao7kenbx 184 8 of of IN cord-002530-ao7kenbx 184 9 the the DT cord-002530-ao7kenbx 184 10 MIE MIE NNP cord-002530-ao7kenbx 184 11 region region NN cord-002530-ao7kenbx 184 12 has have VBZ cord-002530-ao7kenbx 184 13 been be VBN cord-002530-ao7kenbx 184 14 well well RB cord-002530-ao7kenbx 184 15 documented document VBN cord-002530-ao7kenbx 184 16 , , , cord-002530-ao7kenbx 184 17 how how WRB cord-002530-ao7kenbx 184 18 the the DT cord-002530-ao7kenbx 184 19 splicing splicing NN cord-002530-ao7kenbx 184 20 is be VBZ cord-002530-ao7kenbx 184 21 regulated regulate VBN cord-002530-ao7kenbx 184 22 and and CC cord-002530-ao7kenbx 184 23 the the DT cord-002530-ao7kenbx 184 24 downstream downstream JJ cord-002530-ao7kenbx 184 25 consequences consequence NNS cord-002530-ao7kenbx 184 26 for for IN cord-002530-ao7kenbx 184 27 virus virus NN cord-002530-ao7kenbx 184 28 replication replication NN cord-002530-ao7kenbx 184 29 are be VBP cord-002530-ao7kenbx 184 30 poorly poorly RB cord-002530-ao7kenbx 184 31 understood understand VBN cord-002530-ao7kenbx 184 32 [ [ -LRB- cord-002530-ao7kenbx 184 33 10 10 CD cord-002530-ao7kenbx 184 34 ] ] -RRB- cord-002530-ao7kenbx 184 35 . . . cord-002530-ao7kenbx 185 1 However however RB cord-002530-ao7kenbx 185 2 , , , cord-002530-ao7kenbx 185 3 it -PRON- PRP cord-002530-ao7kenbx 185 4 is be VBZ cord-002530-ao7kenbx 185 5 likely likely JJ cord-002530-ao7kenbx 185 6 to to TO cord-002530-ao7kenbx 185 7 depend depend VB cord-002530-ao7kenbx 185 8 on on IN cord-002530-ao7kenbx 185 9 a a DT cord-002530-ao7kenbx 185 10 complex complex JJ cord-002530-ao7kenbx 185 11 interplay interplay NN cord-002530-ao7kenbx 185 12 of of IN cord-002530-ao7kenbx 185 13 cellular cellular JJ cord-002530-ao7kenbx 185 14 and and CC cord-002530-ao7kenbx 185 15 viral viral JJ cord-002530-ao7kenbx 185 16 factors factor NNS cord-002530-ao7kenbx 185 17 and and CC cord-002530-ao7kenbx 185 18 the the DT cord-002530-ao7kenbx 185 19 architecture architecture NN cord-002530-ao7kenbx 185 20 of of IN cord-002530-ao7kenbx 185 21 the the DT cord-002530-ao7kenbx 185 22 MIE MIE NNP cord-002530-ao7kenbx 185 23 transcriptional transcriptional JJ cord-002530-ao7kenbx 185 24 region region NN cord-002530-ao7kenbx 185 25 [ [ -LRB- cord-002530-ao7kenbx 185 26 37 37 CD cord-002530-ao7kenbx 185 27 ] ] -RRB- cord-002530-ao7kenbx 185 28 . . . cord-002530-ao7kenbx 186 1 Expression expression NN cord-002530-ao7kenbx 186 2 of of IN cord-002530-ao7kenbx 186 3 the the DT cord-002530-ao7kenbx 186 4 MIE MIE NNP cord-002530-ao7kenbx 186 5 transcripts transcript NNS cord-002530-ao7kenbx 186 6 and and CC cord-002530-ao7kenbx 186 7 their -PRON- PRP$ cord-002530-ao7kenbx 186 8 splicing splicing NN cord-002530-ao7kenbx 186 9 are be VBP cord-002530-ao7kenbx 186 10 intimately intimately RB cord-002530-ao7kenbx 186 11 linked link VBN cord-002530-ao7kenbx 186 12 to to IN cord-002530-ao7kenbx 186 13 multiple multiple JJ cord-002530-ao7kenbx 186 14 factors factor NNS cord-002530-ao7kenbx 186 15 including include VBG cord-002530-ao7kenbx 186 16 cell cell NN cord-002530-ao7kenbx 186 17 cycle cycle NN cord-002530-ao7kenbx 186 18 , , , cord-002530-ao7kenbx 186 19 cell cell NN cord-002530-ao7kenbx 186 20 type type NN cord-002530-ao7kenbx 186 21 and and CC cord-002530-ao7kenbx 186 22 differentiation differentiation NN cord-002530-ao7kenbx 186 23 status status NN cord-002530-ao7kenbx 186 24 [ [ -LRB- cord-002530-ao7kenbx 186 25 13 13 CD cord-002530-ao7kenbx 186 26 , , , cord-002530-ao7kenbx 186 27 38 38 CD cord-002530-ao7kenbx 186 28 , , , cord-002530-ao7kenbx 186 29 39 39 CD cord-002530-ao7kenbx 186 30 ] ] -RRB- cord-002530-ao7kenbx 186 31 . . . cord-002530-ao7kenbx 187 1 Suppression suppression NN cord-002530-ao7kenbx 187 2 of of IN cord-002530-ao7kenbx 187 3 MIE MIE NNP cord-002530-ao7kenbx 187 4 transcripts transcript NNS cord-002530-ao7kenbx 187 5 during during IN cord-002530-ao7kenbx 187 6 HCMV HCMV NNP cord-002530-ao7kenbx 187 7 infection infection NN cord-002530-ao7kenbx 187 8 of of IN cord-002530-ao7kenbx 187 9 myeloid myeloid JJ cord-002530-ao7kenbx 187 10 cultures culture NNS cord-002530-ao7kenbx 187 11 is be VBZ cord-002530-ao7kenbx 187 12 thought think VBN cord-002530-ao7kenbx 187 13 to to TO cord-002530-ao7kenbx 187 14 be be VB cord-002530-ao7kenbx 187 15 key key JJ cord-002530-ao7kenbx 187 16 for for IN cord-002530-ao7kenbx 187 17 establishing establish VBG cord-002530-ao7kenbx 187 18 latent latent JJ cord-002530-ao7kenbx 187 19 infection infection NN cord-002530-ao7kenbx 187 20 . . . cord-002530-ao7kenbx 188 1 Conversely conversely RB cord-002530-ao7kenbx 188 2 , , , cord-002530-ao7kenbx 188 3 activation activation NN cord-002530-ao7kenbx 188 4 and and CC cord-002530-ao7kenbx 188 5 differentiation differentiation NN cord-002530-ao7kenbx 188 6 of of IN cord-002530-ao7kenbx 188 7 latently latently RB cord-002530-ao7kenbx 188 8 infected infect VBN cord-002530-ao7kenbx 188 9 cells cell NNS cord-002530-ao7kenbx 188 10 results result NNS cord-002530-ao7kenbx 188 11 in in IN cord-002530-ao7kenbx 188 12 up up IN cord-002530-ao7kenbx 188 13 - - HYPH cord-002530-ao7kenbx 188 14 regulation regulation NN cord-002530-ao7kenbx 188 15 of of IN cord-002530-ao7kenbx 188 16 MIE MIE NNP cord-002530-ao7kenbx 188 17 gene gene NN cord-002530-ao7kenbx 188 18 expression expression NN cord-002530-ao7kenbx 188 19 and and CC cord-002530-ao7kenbx 188 20 subsequent subsequent JJ cord-002530-ao7kenbx 188 21 reactivation reactivation NN cord-002530-ao7kenbx 188 22 . . . cord-002530-ao7kenbx 189 1 During during IN cord-002530-ao7kenbx 189 2 infection infection NN cord-002530-ao7kenbx 189 3 of of IN cord-002530-ao7kenbx 189 4 fibroblast fibroblast NN cord-002530-ao7kenbx 189 5 cells cell NNS cord-002530-ao7kenbx 189 6 , , , cord-002530-ao7kenbx 189 7 expression expression NN cord-002530-ao7kenbx 189 8 of of IN cord-002530-ao7kenbx 189 9 MIE MIE NNP cord-002530-ao7kenbx 189 10 transcripts transcript NNS cord-002530-ao7kenbx 189 11 and and CC cord-002530-ao7kenbx 189 12 replication replication NN cord-002530-ao7kenbx 189 13 are be VBP cord-002530-ao7kenbx 189 14 closely closely RB cord-002530-ao7kenbx 189 15 linked link VBN cord-002530-ao7kenbx 189 16 to to IN cord-002530-ao7kenbx 189 17 cell cell NN cord-002530-ao7kenbx 189 18 cycle cycle NN cord-002530-ao7kenbx 189 19 status status NN cord-002530-ao7kenbx 189 20 , , , cord-002530-ao7kenbx 189 21 with with IN cord-002530-ao7kenbx 189 22 MIE MIE NNP cord-002530-ao7kenbx 189 23 expression expression NN cord-002530-ao7kenbx 189 24 suppressed suppress VBN cord-002530-ao7kenbx 189 25 during during IN cord-002530-ao7kenbx 189 26 S S NNP cord-002530-ao7kenbx 189 27 / / SYM cord-002530-ao7kenbx 189 28 G2 G2 NNP cord-002530-ao7kenbx 189 29 phase phase NN cord-002530-ao7kenbx 189 30 [ [ -LRB- cord-002530-ao7kenbx 189 31 40 40 CD cord-002530-ao7kenbx 189 32 , , , cord-002530-ao7kenbx 189 33 41 41 CD cord-002530-ao7kenbx 189 34 ] ] -RRB- cord-002530-ao7kenbx 189 35 . . . cord-002530-ao7kenbx 190 1 This this DT cord-002530-ao7kenbx 190 2 suppression suppression NN cord-002530-ao7kenbx 190 3 is be VBZ cord-002530-ao7kenbx 190 4 due due JJ cord-002530-ao7kenbx 190 5 in in IN cord-002530-ao7kenbx 190 6 part part NN cord-002530-ao7kenbx 190 7 to to IN cord-002530-ao7kenbx 190 8 cyclin cyclin VB cord-002530-ao7kenbx 190 9 A2 A2 NNP cord-002530-ao7kenbx 190 10 , , , cord-002530-ao7kenbx 190 11 which which WDT cord-002530-ao7kenbx 190 12 alters alter VBZ cord-002530-ao7kenbx 190 13 splicing splicing NN cord-002530-ao7kenbx 190 14 of of IN cord-002530-ao7kenbx 190 15 the the DT cord-002530-ao7kenbx 190 16 MIE MIE NNP cord-002530-ao7kenbx 190 17 transcripts transcript NNS cord-002530-ao7kenbx 190 18 in in IN cord-002530-ao7kenbx 190 19 a a DT cord-002530-ao7kenbx 190 20 manner manner NN cord-002530-ao7kenbx 190 21 similar similar JJ cord-002530-ao7kenbx 190 22 to to IN cord-002530-ao7kenbx 190 23 knockdown knockdown NN cord-002530-ao7kenbx 190 24 of of IN cord-002530-ao7kenbx 190 25 VCP VCP NNP cord-002530-ao7kenbx 190 26 , , , cord-002530-ao7kenbx 190 27 resulting result VBG cord-002530-ao7kenbx 190 28 in in IN cord-002530-ao7kenbx 190 29 loss loss NN cord-002530-ao7kenbx 190 30 of of IN cord-002530-ao7kenbx 190 31 IE2 ie2 JJ cord-002530-ao7kenbx 190 32 expression expression NN cord-002530-ao7kenbx 190 33 and and CC cord-002530-ao7kenbx 190 34 failure failure NN cord-002530-ao7kenbx 190 35 in in IN cord-002530-ao7kenbx 190 36 virus virus NN cord-002530-ao7kenbx 190 37 replication replication NN cord-002530-ao7kenbx 190 38 [ [ -LRB- cord-002530-ao7kenbx 190 39 33 33 CD cord-002530-ao7kenbx 190 40 ] ] -RRB- cord-002530-ao7kenbx 190 41 . . . cord-002530-ao7kenbx 191 1 While while IN cord-002530-ao7kenbx 191 2 expression expression NN cord-002530-ao7kenbx 191 3 of of IN cord-002530-ao7kenbx 191 4 cyclin cyclin NN cord-002530-ao7kenbx 191 5 A2 A2 NNP cord-002530-ao7kenbx 191 6 results result NNS cord-002530-ao7kenbx 191 7 in in IN cord-002530-ao7kenbx 191 8 a a DT cord-002530-ao7kenbx 191 9 similar similar JJ cord-002530-ao7kenbx 191 10 phenotype phenotype NN cord-002530-ao7kenbx 191 11 , , , cord-002530-ao7kenbx 191 12 our -PRON- PRP$ cord-002530-ao7kenbx 191 13 data datum NNS cord-002530-ao7kenbx 191 14 shows show VBZ cord-002530-ao7kenbx 191 15 that that IN cord-002530-ao7kenbx 191 16 VCP VCP NNP cord-002530-ao7kenbx 191 17 knockdown knockdown NN cord-002530-ao7kenbx 191 18 does do VBZ cord-002530-ao7kenbx 191 19 not not RB cord-002530-ao7kenbx 191 20 cause cause VB cord-002530-ao7kenbx 191 21 gross gross JJ cord-002530-ao7kenbx 191 22 changes change NNS cord-002530-ao7kenbx 191 23 in in IN cord-002530-ao7kenbx 191 24 the the DT cord-002530-ao7kenbx 191 25 cell cell NN cord-002530-ao7kenbx 191 26 cycle cycle NN cord-002530-ao7kenbx 191 27 or or CC cord-002530-ao7kenbx 191 28 increased increase VBN cord-002530-ao7kenbx 191 29 cyclin cyclin NN cord-002530-ao7kenbx 191 30 A2 A2 NNP cord-002530-ao7kenbx 191 31 expression expression NN cord-002530-ao7kenbx 191 32 , , , cord-002530-ao7kenbx 191 33 indicating indicate VBG cord-002530-ao7kenbx 191 34 an an DT cord-002530-ao7kenbx 191 35 alternative alternative JJ cord-002530-ao7kenbx 191 36 mechanism mechanism NN cord-002530-ao7kenbx 191 37 of of IN cord-002530-ao7kenbx 191 38 action action NN cord-002530-ao7kenbx 191 39 . . . cord-002530-ao7kenbx 192 1 Although although IN cord-002530-ao7kenbx 192 2 the the DT cord-002530-ao7kenbx 192 3 majority majority NN cord-002530-ao7kenbx 192 4 of of IN cord-002530-ao7kenbx 192 5 research research NN cord-002530-ao7kenbx 192 6 on on IN cord-002530-ao7kenbx 192 7 VCP VCP NNP cord-002530-ao7kenbx 192 8 has have VBZ cord-002530-ao7kenbx 192 9 focused focus VBN cord-002530-ao7kenbx 192 10 on on IN cord-002530-ao7kenbx 192 11 its -PRON- PRP$ cord-002530-ao7kenbx 192 12 cytoplasmic cytoplasmic JJ cord-002530-ao7kenbx 192 13 activity activity NN cord-002530-ao7kenbx 192 14 , , , cord-002530-ao7kenbx 192 15 recent recent JJ cord-002530-ao7kenbx 192 16 studies study NNS cord-002530-ao7kenbx 192 17 have have VBP cord-002530-ao7kenbx 192 18 identified identify VBN cord-002530-ao7kenbx 192 19 equally equally RB cord-002530-ao7kenbx 192 20 important important JJ cord-002530-ao7kenbx 192 21 and and CC cord-002530-ao7kenbx 192 22 diverse diverse JJ cord-002530-ao7kenbx 192 23 roles role NNS cord-002530-ao7kenbx 192 24 for for IN cord-002530-ao7kenbx 192 25 VCP VCP NNP cord-002530-ao7kenbx 192 26 in in IN cord-002530-ao7kenbx 192 27 the the DT cord-002530-ao7kenbx 192 28 nucleus nucleus NN cord-002530-ao7kenbx 192 29 . . . cord-002530-ao7kenbx 193 1 The the DT cord-002530-ao7kenbx 193 2 association association NN cord-002530-ao7kenbx 193 3 of of IN cord-002530-ao7kenbx 193 4 VCP VCP NNP cord-002530-ao7kenbx 193 5 with with IN cord-002530-ao7kenbx 193 6 the the DT cord-002530-ao7kenbx 193 7 viral viral JJ cord-002530-ao7kenbx 193 8 replication replication NN cord-002530-ao7kenbx 193 9 compartments compartment NNS cord-002530-ao7kenbx 193 10 early early RB cord-002530-ao7kenbx 193 11 in in IN cord-002530-ao7kenbx 193 12 infection infection NN cord-002530-ao7kenbx 193 13 suggests suggest VBZ cord-002530-ao7kenbx 193 14 that that IN cord-002530-ao7kenbx 193 15 the the DT cord-002530-ao7kenbx 193 16 nuclear nuclear JJ cord-002530-ao7kenbx 193 17 functions function NNS cord-002530-ao7kenbx 193 18 of of IN cord-002530-ao7kenbx 193 19 VCP VCP NNP cord-002530-ao7kenbx 193 20 may may MD cord-002530-ao7kenbx 193 21 be be VB cord-002530-ao7kenbx 193 22 playing play VBG cord-002530-ao7kenbx 193 23 a a DT cord-002530-ao7kenbx 193 24 critical critical JJ cord-002530-ao7kenbx 193 25 role role NN cord-002530-ao7kenbx 193 26 in in IN cord-002530-ao7kenbx 193 27 HCMV HCMV NNP cord-002530-ao7kenbx 193 28 replication replication NN cord-002530-ao7kenbx 193 29 . . . cord-002530-ao7kenbx 194 1 Studies study NNS cord-002530-ao7kenbx 194 2 in in IN cord-002530-ao7kenbx 194 3 yeast yeast NN cord-002530-ao7kenbx 194 4 and and CC cord-002530-ao7kenbx 194 5 mammalian mammalian JJ cord-002530-ao7kenbx 194 6 cell cell NN cord-002530-ao7kenbx 194 7 lines line NNS cord-002530-ao7kenbx 194 8 have have VBP cord-002530-ao7kenbx 194 9 demonstrated demonstrate VBN cord-002530-ao7kenbx 194 10 that that IN cord-002530-ao7kenbx 194 11 VCP VCP NNP cord-002530-ao7kenbx 194 12 modulates modulate VBZ cord-002530-ao7kenbx 194 13 the the DT cord-002530-ao7kenbx 194 14 association association NN cord-002530-ao7kenbx 194 15 of of IN cord-002530-ao7kenbx 194 16 factors factor NNS cord-002530-ao7kenbx 194 17 with with IN cord-002530-ao7kenbx 194 18 chromatin chromatin NN cord-002530-ao7kenbx 194 19 , , , cord-002530-ao7kenbx 194 20 leading lead VBG cord-002530-ao7kenbx 194 21 to to IN cord-002530-ao7kenbx 194 22 regulation regulation NN cord-002530-ao7kenbx 194 23 of of IN cord-002530-ao7kenbx 194 24 cell cell NN cord-002530-ao7kenbx 194 25 cycle cycle NN cord-002530-ao7kenbx 194 26 , , , cord-002530-ao7kenbx 194 27 transcription transcription NN cord-002530-ao7kenbx 194 28 , , , cord-002530-ao7kenbx 194 29 DNA dna NN cord-002530-ao7kenbx 194 30 replication replication NN cord-002530-ao7kenbx 194 31 and and CC cord-002530-ao7kenbx 194 32 DNA dna NN cord-002530-ao7kenbx 194 33 damage damage NN cord-002530-ao7kenbx 194 34 response response NN cord-002530-ao7kenbx 194 35 , , , cord-002530-ao7kenbx 194 36 all all DT cord-002530-ao7kenbx 194 37 of of IN cord-002530-ao7kenbx 194 38 which which WDT cord-002530-ao7kenbx 194 39 could could MD cord-002530-ao7kenbx 194 40 potentially potentially RB cord-002530-ao7kenbx 194 41 affect affect VB cord-002530-ao7kenbx 194 42 virus virus NN cord-002530-ao7kenbx 194 43 replication replication NN cord-002530-ao7kenbx 194 44 and and CC cord-002530-ao7kenbx 194 45 MIE MIE NNP cord-002530-ao7kenbx 194 46 expression expression NN cord-002530-ao7kenbx 194 47 [ [ -LRB- cord-002530-ao7kenbx 194 48 21 21 CD cord-002530-ao7kenbx 194 49 ] ] -RRB- cord-002530-ao7kenbx 194 50 . . . cord-002530-ao7kenbx 195 1 Previous previous JJ cord-002530-ao7kenbx 195 2 reports report NNS cord-002530-ao7kenbx 195 3 have have VBP cord-002530-ao7kenbx 195 4 shown show VBN cord-002530-ao7kenbx 195 5 that that IN cord-002530-ao7kenbx 195 6 HCMV HCMV NNP cord-002530-ao7kenbx 195 7 induces induce VBZ cord-002530-ao7kenbx 195 8 the the DT cord-002530-ao7kenbx 195 9 host host NN cord-002530-ao7kenbx 195 10 DNA dna NN cord-002530-ao7kenbx 195 11 damage damage NN cord-002530-ao7kenbx 195 12 response response NN cord-002530-ao7kenbx 195 13 , , , cord-002530-ao7kenbx 195 14 with with IN cord-002530-ao7kenbx 195 15 response response NN cord-002530-ao7kenbx 195 16 factors factor NNS cord-002530-ao7kenbx 195 17 including include VBG cord-002530-ao7kenbx 195 18 ATM atm NN cord-002530-ao7kenbx 195 19 , , , cord-002530-ao7kenbx 195 20 γH2AX γH2AX NNP cord-002530-ao7kenbx 195 21 and and CC cord-002530-ao7kenbx 195 22 E2F1 E2F1 NNP cord-002530-ao7kenbx 195 23 required require VBD cord-002530-ao7kenbx 195 24 for for IN cord-002530-ao7kenbx 195 25 efficient efficient JJ cord-002530-ao7kenbx 195 26 HCMV HCMV NNP cord-002530-ao7kenbx 195 27 replication replication NN cord-002530-ao7kenbx 195 28 and and CC cord-002530-ao7kenbx 195 29 IE2 ie2 JJ cord-002530-ao7kenbx 195 30 expression expression NN cord-002530-ao7kenbx 195 31 [ [ -LRB- cord-002530-ao7kenbx 195 32 42 42 CD cord-002530-ao7kenbx 195 33 ] ] -RRB- cord-002530-ao7kenbx 195 34 . . . cord-002530-ao7kenbx 196 1 γH2AX γH2AX NNP cord-002530-ao7kenbx 196 2 also also RB cord-002530-ao7kenbx 196 3 colocalises colocalise VBZ cord-002530-ao7kenbx 196 4 with with IN cord-002530-ao7kenbx 196 5 the the DT cord-002530-ao7kenbx 196 6 viral viral JJ cord-002530-ao7kenbx 196 7 replication replication NN cord-002530-ao7kenbx 196 8 compartments compartment NNS cord-002530-ao7kenbx 196 9 in in IN cord-002530-ao7kenbx 196 10 the the DT cord-002530-ao7kenbx 196 11 nucleus nucleus NN cord-002530-ao7kenbx 196 12 . . . cord-002530-ao7kenbx 197 1 VCP VCP NNP cord-002530-ao7kenbx 197 2 acts act VBZ cord-002530-ao7kenbx 197 3 downstream downstream RB cord-002530-ao7kenbx 197 4 of of IN cord-002530-ao7kenbx 197 5 ATM atm NN cord-002530-ao7kenbx 197 6 and and CC cord-002530-ao7kenbx 197 7 is be VBZ cord-002530-ao7kenbx 197 8 required require VBN cord-002530-ao7kenbx 197 9 for for IN cord-002530-ao7kenbx 197 10 the the DT cord-002530-ao7kenbx 197 11 removal removal NN cord-002530-ao7kenbx 197 12 of of IN cord-002530-ao7kenbx 197 13 ubiquitinated ubiquitinated JJ cord-002530-ao7kenbx 197 14 factors factor NNS cord-002530-ao7kenbx 197 15 associated associate VBN cord-002530-ao7kenbx 197 16 with with IN cord-002530-ao7kenbx 197 17 dsDNA dsdna JJ cord-002530-ao7kenbx 197 18 break break NN cord-002530-ao7kenbx 197 19 regions region NNS cord-002530-ao7kenbx 197 20 , , , cord-002530-ao7kenbx 197 21 allowing allow VBG cord-002530-ao7kenbx 197 22 repair repair NN cord-002530-ao7kenbx 197 23 to to TO cord-002530-ao7kenbx 197 24 proceed proceed VB cord-002530-ao7kenbx 197 25 [ [ -LRB- cord-002530-ao7kenbx 197 26 21 21 CD cord-002530-ao7kenbx 197 27 ] ] -RRB- cord-002530-ao7kenbx 197 28 . . . cord-002530-ao7kenbx 198 1 If if IN cord-002530-ao7kenbx 198 2 knockdown knockdown NN cord-002530-ao7kenbx 198 3 of of IN cord-002530-ao7kenbx 198 4 VCP VCP NNP cord-002530-ao7kenbx 198 5 disrupts disrupt VBZ cord-002530-ao7kenbx 198 6 the the DT cord-002530-ao7kenbx 198 7 DNA dna NN cord-002530-ao7kenbx 198 8 damage damage NN cord-002530-ao7kenbx 198 9 response response NN cord-002530-ao7kenbx 198 10 during during IN cord-002530-ao7kenbx 198 11 HCMV HCMV NNP cord-002530-ao7kenbx 198 12 infection infection NN cord-002530-ao7kenbx 198 13 , , , cord-002530-ao7kenbx 198 14 this this DT cord-002530-ao7kenbx 198 15 could could MD cord-002530-ao7kenbx 198 16 contribute contribute VB cord-002530-ao7kenbx 198 17 to to IN cord-002530-ao7kenbx 198 18 the the DT cord-002530-ao7kenbx 198 19 observed observed JJ cord-002530-ao7kenbx 198 20 loss loss NN cord-002530-ao7kenbx 198 21 of of IN cord-002530-ao7kenbx 198 22 IE2 ie2 JJ cord-002530-ao7kenbx 198 23 expression expression NN cord-002530-ao7kenbx 198 24 and and CC cord-002530-ao7kenbx 198 25 inhibition inhibition NN cord-002530-ao7kenbx 198 26 of of IN cord-002530-ao7kenbx 198 27 virus virus NN cord-002530-ao7kenbx 198 28 replication replication NN cord-002530-ao7kenbx 198 29 . . . cord-002530-ao7kenbx 199 1 Reports report NNS cord-002530-ao7kenbx 199 2 are be VBP cord-002530-ao7kenbx 199 3 also also RB cord-002530-ao7kenbx 199 4 emerging emerge VBG cord-002530-ao7kenbx 199 5 that that IN cord-002530-ao7kenbx 199 6 VCP VCP NNP cord-002530-ao7kenbx 199 7 plays play VBZ cord-002530-ao7kenbx 199 8 a a DT cord-002530-ao7kenbx 199 9 role role NN cord-002530-ao7kenbx 199 10 in in IN cord-002530-ao7kenbx 199 11 transcript transcript NN cord-002530-ao7kenbx 199 12 stability stability NN cord-002530-ao7kenbx 199 13 and and CC cord-002530-ao7kenbx 199 14 regulation regulation NN cord-002530-ao7kenbx 199 15 of of IN cord-002530-ao7kenbx 199 16 splicing splicing NN cord-002530-ao7kenbx 199 17 . . . cord-002530-ao7kenbx 200 1 HuR HuR NNP cord-002530-ao7kenbx 200 2 is be VBZ cord-002530-ao7kenbx 200 3 a a DT cord-002530-ao7kenbx 200 4 RNA RNA NNP cord-002530-ao7kenbx 200 5 binding bind VBG cord-002530-ao7kenbx 200 6 protein protein NN cord-002530-ao7kenbx 200 7 that that WDT cord-002530-ao7kenbx 200 8 stabilizes stabilize VBZ cord-002530-ao7kenbx 200 9 transcripts transcript NNS cord-002530-ao7kenbx 200 10 by by IN cord-002530-ao7kenbx 200 11 binding bind VBG cord-002530-ao7kenbx 200 12 to to IN cord-002530-ao7kenbx 200 13 canonical canonical JJ cord-002530-ao7kenbx 200 14 AU AU NNP cord-002530-ao7kenbx 200 15 rich rich JJ cord-002530-ao7kenbx 200 16 regions region NNS cord-002530-ao7kenbx 200 17 within within IN cord-002530-ao7kenbx 200 18 3'UTRs 3'utrs CD cord-002530-ao7kenbx 200 19 . . . cord-002530-ao7kenbx 201 1 Following follow VBG cord-002530-ao7kenbx 201 2 ubiquitination ubiquitination NN cord-002530-ao7kenbx 201 3 of of IN cord-002530-ao7kenbx 201 4 HuR hur NN cord-002530-ao7kenbx 201 5 in in IN cord-002530-ao7kenbx 201 6 response response NN cord-002530-ao7kenbx 201 7 to to IN cord-002530-ao7kenbx 201 8 stress stress NN cord-002530-ao7kenbx 201 9 signals signal NNS cord-002530-ao7kenbx 201 10 , , , cord-002530-ao7kenbx 201 11 VCP VCP NNP cord-002530-ao7kenbx 201 12 removes remove VBZ cord-002530-ao7kenbx 201 13 HuR hur NN cord-002530-ao7kenbx 201 14 from from IN cord-002530-ao7kenbx 201 15 associated associate VBN cord-002530-ao7kenbx 201 16 transcripts transcript NNS cord-002530-ao7kenbx 201 17 resulting result VBG cord-002530-ao7kenbx 201 18 in in IN cord-002530-ao7kenbx 201 19 transcript transcript NN cord-002530-ao7kenbx 201 20 destabilization destabilization NN cord-002530-ao7kenbx 201 21 [ [ -LRB- cord-002530-ao7kenbx 201 22 43 43 CD cord-002530-ao7kenbx 201 23 ] ] -RRB- cord-002530-ao7kenbx 201 24 . . . cord-002530-ao7kenbx 202 1 In in IN cord-002530-ao7kenbx 202 2 Drosophila Drosophila NNP cord-002530-ao7kenbx 202 3 , , , cord-002530-ao7kenbx 202 4 VCP VCP NNP cord-002530-ao7kenbx 202 5 has have VBZ cord-002530-ao7kenbx 202 6 been be VBN cord-002530-ao7kenbx 202 7 linked link VBN cord-002530-ao7kenbx 202 8 to to IN cord-002530-ao7kenbx 202 9 dendrite dendrite NN cord-002530-ao7kenbx 202 10 pruning pruning NN cord-002530-ao7kenbx 202 11 in in IN cord-002530-ao7kenbx 202 12 neuronal neuronal JJ cord-002530-ao7kenbx 202 13 cells cell NNS cord-002530-ao7kenbx 202 14 [ [ -LRB- cord-002530-ao7kenbx 202 15 44 44 CD cord-002530-ao7kenbx 202 16 ] ] -RRB- cord-002530-ao7kenbx 202 17 . . . cord-002530-ao7kenbx 203 1 Expression expression NN cord-002530-ao7kenbx 203 2 of of IN cord-002530-ao7kenbx 203 3 mutant mutant JJ cord-002530-ao7kenbx 203 4 forms form NNS cord-002530-ao7kenbx 203 5 of of IN cord-002530-ao7kenbx 203 6 VCP vcp NN cord-002530-ao7kenbx 203 7 results result NNS cord-002530-ao7kenbx 203 8 in in IN cord-002530-ao7kenbx 203 9 incorrect incorrect JJ cord-002530-ao7kenbx 203 10 splicing splicing NN cord-002530-ao7kenbx 203 11 of of IN cord-002530-ao7kenbx 203 12 a a DT cord-002530-ao7kenbx 203 13 gene gene NN cord-002530-ao7kenbx 203 14 important important JJ cord-002530-ao7kenbx 203 15 to to IN cord-002530-ao7kenbx 203 16 dendritic dendritic JJ cord-002530-ao7kenbx 203 17 pruning pruning NN cord-002530-ao7kenbx 203 18 , , , cord-002530-ao7kenbx 203 19 MICAL MICAL NNP cord-002530-ao7kenbx 203 20 , , , cord-002530-ao7kenbx 203 21 possibly possibly RB cord-002530-ao7kenbx 203 22 through through IN cord-002530-ao7kenbx 203 23 mis mis NN cord-002530-ao7kenbx 203 24 - - HYPH cord-002530-ao7kenbx 203 25 localisation localisation NN cord-002530-ao7kenbx 203 26 of of IN cord-002530-ao7kenbx 203 27 the the DT cord-002530-ao7kenbx 203 28 RNA RNA NNP cord-002530-ao7kenbx 203 29 binding binding NN cord-002530-ao7kenbx 203 30 protein protein NN cord-002530-ao7kenbx 203 31 TDP-43 TDP-43 NNP cord-002530-ao7kenbx 203 32 . . . cord-002530-ao7kenbx 204 1 Given give VBN cord-002530-ao7kenbx 204 2 the the DT cord-002530-ao7kenbx 204 3 known know VBN cord-002530-ao7kenbx 204 4 mechanism mechanism NN cord-002530-ao7kenbx 204 5 of of IN cord-002530-ao7kenbx 204 6 action action NN cord-002530-ao7kenbx 204 7 of of IN cord-002530-ao7kenbx 204 8 VCP VCP NNP cord-002530-ao7kenbx 204 9 it -PRON- PRP cord-002530-ao7kenbx 204 10 is be VBZ cord-002530-ao7kenbx 204 11 likely likely JJ cord-002530-ao7kenbx 204 12 that that IN cord-002530-ao7kenbx 204 13 any any DT cord-002530-ao7kenbx 204 14 effects effect NNS cord-002530-ao7kenbx 204 15 on on IN cord-002530-ao7kenbx 204 16 MIE mie NN cord-002530-ao7kenbx 204 17 splicing splicing NN cord-002530-ao7kenbx 204 18 are be VBP cord-002530-ao7kenbx 204 19 indirect indirect JJ cord-002530-ao7kenbx 204 20 , , , cord-002530-ao7kenbx 204 21 occurring occur VBG cord-002530-ao7kenbx 204 22 through through IN cord-002530-ao7kenbx 204 23 targeting targeting NN cord-002530-ao7kenbx 204 24 of of IN cord-002530-ao7kenbx 204 25 a a DT cord-002530-ao7kenbx 204 26 ubiquitinated ubiquitinated JJ cord-002530-ao7kenbx 204 27 intermediate intermediate JJ cord-002530-ao7kenbx 204 28 protein protein NN cord-002530-ao7kenbx 204 29 . . . cord-002530-ao7kenbx 205 1 One one CD cord-002530-ao7kenbx 205 2 possible possible JJ cord-002530-ao7kenbx 205 3 model model NN cord-002530-ao7kenbx 205 4 is be VBZ cord-002530-ao7kenbx 205 5 that that IN cord-002530-ao7kenbx 205 6 a a DT cord-002530-ao7kenbx 205 7 negative negative JJ cord-002530-ao7kenbx 205 8 regulator regulator NN cord-002530-ao7kenbx 205 9 of of IN cord-002530-ao7kenbx 205 10 IE2 ie2 JJ cord-002530-ao7kenbx 205 11 splicing splicing NN cord-002530-ao7kenbx 205 12 exists exist VBZ cord-002530-ao7kenbx 205 13 at at IN cord-002530-ao7kenbx 205 14 early early JJ cord-002530-ao7kenbx 205 15 stages stage NNS cord-002530-ao7kenbx 205 16 during during IN cord-002530-ao7kenbx 205 17 HCMV HCMV NNP cord-002530-ao7kenbx 205 18 infection infection NN cord-002530-ao7kenbx 205 19 , , , cord-002530-ao7kenbx 205 20 which which WDT cord-002530-ao7kenbx 205 21 promotes promote VBZ cord-002530-ao7kenbx 205 22 IE1 ie1 NN cord-002530-ao7kenbx 205 23 expression expression NN cord-002530-ao7kenbx 205 24 at at IN cord-002530-ao7kenbx 205 25 the the DT cord-002530-ao7kenbx 205 26 expense expense NN cord-002530-ao7kenbx 205 27 of of IN cord-002530-ao7kenbx 205 28 IE2 ie2 JJ cord-002530-ao7kenbx 205 29 expression expression NN cord-002530-ao7kenbx 205 30 . . . cord-002530-ao7kenbx 206 1 Based base VBN cord-002530-ao7kenbx 206 2 on on IN cord-002530-ao7kenbx 206 3 the the DT cord-002530-ao7kenbx 206 4 transcriptional transcriptional JJ cord-002530-ao7kenbx 206 5 architecture architecture NN cord-002530-ao7kenbx 206 6 of of IN cord-002530-ao7kenbx 206 7 the the DT cord-002530-ao7kenbx 206 8 major major JJ cord-002530-ao7kenbx 206 9 immediate immediate JJ cord-002530-ao7kenbx 206 10 region region NN cord-002530-ao7kenbx 206 11 , , , cord-002530-ao7kenbx 206 12 such such PDT cord-002530-ao7kenbx 206 13 a a DT cord-002530-ao7kenbx 206 14 factor factor NN cord-002530-ao7kenbx 206 15 could could MD cord-002530-ao7kenbx 206 16 regulate regulate VB cord-002530-ao7kenbx 206 17 MIE MIE NNP cord-002530-ao7kenbx 206 18 splicing splicing NN cord-002530-ao7kenbx 206 19 by by IN cord-002530-ao7kenbx 206 20 promoting promote VBG cord-002530-ao7kenbx 206 21 polyadenylation polyadenylation NN cord-002530-ao7kenbx 206 22 of of IN cord-002530-ao7kenbx 206 23 the the DT cord-002530-ao7kenbx 206 24 IE1 ie1 NN cord-002530-ao7kenbx 206 25 transcript transcript NN cord-002530-ao7kenbx 206 26 , , , cord-002530-ao7kenbx 206 27 thereby thereby RB cord-002530-ao7kenbx 206 28 inhibiting inhibit VBG cord-002530-ao7kenbx 206 29 read read VBN cord-002530-ao7kenbx 206 30 - - HYPH cord-002530-ao7kenbx 206 31 through through NN cord-002530-ao7kenbx 206 32 to to IN cord-002530-ao7kenbx 206 33 the the DT cord-002530-ao7kenbx 206 34 IE2 ie2 JJ cord-002530-ao7kenbx 206 35 final final JJ cord-002530-ao7kenbx 206 36 exon exon NN cord-002530-ao7kenbx 206 37 . . . cord-002530-ao7kenbx 207 1 The the DT cord-002530-ao7kenbx 207 2 factor factor NN cord-002530-ao7kenbx 207 3 would would MD cord-002530-ao7kenbx 207 4 be be VB cord-002530-ao7kenbx 207 5 ubiquitinated ubiquitinate VBN cord-002530-ao7kenbx 207 6 and and CC cord-002530-ao7kenbx 207 7 removed remove VBN cord-002530-ao7kenbx 207 8 by by IN cord-002530-ao7kenbx 207 9 VCP VCP NNP cord-002530-ao7kenbx 207 10 between between IN cord-002530-ao7kenbx 207 11 12 12 CD cord-002530-ao7kenbx 207 12 and and CC cord-002530-ao7kenbx 207 13 24 24 CD cord-002530-ao7kenbx 207 14 HPI HPI NNP cord-002530-ao7kenbx 207 15 , , , cord-002530-ao7kenbx 207 16 allowing allow VBG cord-002530-ao7kenbx 207 17 read read VBN cord-002530-ao7kenbx 207 18 - - HYPH cord-002530-ao7kenbx 207 19 through through NN cord-002530-ao7kenbx 207 20 of of IN cord-002530-ao7kenbx 207 21 the the DT cord-002530-ao7kenbx 207 22 first first JJ cord-002530-ao7kenbx 207 23 polyadenylation polyadenylation NN cord-002530-ao7kenbx 207 24 site site NN cord-002530-ao7kenbx 207 25 and and CC cord-002530-ao7kenbx 207 26 splicing splicing NN cord-002530-ao7kenbx 207 27 of of IN cord-002530-ao7kenbx 207 28 the the DT cord-002530-ao7kenbx 207 29 IE2 ie2 JJ cord-002530-ao7kenbx 207 30 transcript transcript NN cord-002530-ao7kenbx 207 31 . . . cord-002530-ao7kenbx 208 1 This this DT cord-002530-ao7kenbx 208 2 would would MD cord-002530-ao7kenbx 208 3 be be VB cord-002530-ao7kenbx 208 4 consistent consistent JJ cord-002530-ao7kenbx 208 5 with with IN cord-002530-ao7kenbx 208 6 the the DT cord-002530-ao7kenbx 208 7 initial initial JJ cord-002530-ao7kenbx 208 8 plateau plateau NN cord-002530-ao7kenbx 208 9 in in IN cord-002530-ao7kenbx 208 10 IE2 ie2 JJ cord-002530-ao7kenbx 208 11 transcription transcription NN cord-002530-ao7kenbx 208 12 and and CC cord-002530-ao7kenbx 208 13 localisation localisation NN cord-002530-ao7kenbx 208 14 of of IN cord-002530-ao7kenbx 208 15 VCP VCP NNP cord-002530-ao7kenbx 208 16 to to IN cord-002530-ao7kenbx 208 17 the the DT cord-002530-ao7kenbx 208 18 replication replication NN cord-002530-ao7kenbx 208 19 compartments compartment NNS cord-002530-ao7kenbx 208 20 at at IN cord-002530-ao7kenbx 208 21 12 12 CD cord-002530-ao7kenbx 208 22 to to TO cord-002530-ao7kenbx 208 23 24 24 CD cord-002530-ao7kenbx 208 24 HPI HPI NNP cord-002530-ao7kenbx 208 25 , , , cord-002530-ao7kenbx 208 26 where where WRB cord-002530-ao7kenbx 208 27 spliceosome spliceosome NNP cord-002530-ao7kenbx 208 28 and and CC cord-002530-ao7kenbx 208 29 proteasome proteasome NN cord-002530-ao7kenbx 208 30 components component NNS cord-002530-ao7kenbx 208 31 have have VBP cord-002530-ao7kenbx 208 32 also also RB cord-002530-ao7kenbx 208 33 been be VBN cord-002530-ao7kenbx 208 34 reported report VBN cord-002530-ao7kenbx 208 35 to to IN cord-002530-ao7kenbx 208 36 colocalise colocalise NNP cord-002530-ao7kenbx 208 37 [ [ -LRB- cord-002530-ao7kenbx 208 38 30 30 CD cord-002530-ao7kenbx 208 39 , , , cord-002530-ao7kenbx 208 40 45 45 CD cord-002530-ao7kenbx 208 41 ] ] -RRB- cord-002530-ao7kenbx 208 42 . . . cord-002530-ao7kenbx 209 1 The the DT cord-002530-ao7kenbx 209 2 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 209 3 data datum NNS cord-002530-ao7kenbx 209 4 also also RB cord-002530-ao7kenbx 209 5 supports support VBZ cord-002530-ao7kenbx 209 6 this this DT cord-002530-ao7kenbx 209 7 model model NN cord-002530-ao7kenbx 209 8 , , , cord-002530-ao7kenbx 209 9 with with IN cord-002530-ao7kenbx 209 10 inhibition inhibition NN cord-002530-ao7kenbx 209 11 of of IN cord-002530-ao7kenbx 209 12 IE2 ie2 JJ cord-002530-ao7kenbx 209 13 expression expression NN cord-002530-ao7kenbx 209 14 only only RB cord-002530-ao7kenbx 209 15 effective effective JJ cord-002530-ao7kenbx 209 16 with with IN cord-002530-ao7kenbx 209 17 either either DT cord-002530-ao7kenbx 209 18 pre pre JJ cord-002530-ao7kenbx 209 19 - - JJ cord-002530-ao7kenbx 209 20 treatment treatment JJ cord-002530-ao7kenbx 209 21 or or CC cord-002530-ao7kenbx 209 22 addition addition NN cord-002530-ao7kenbx 209 23 of of IN cord-002530-ao7kenbx 209 24 the the DT cord-002530-ao7kenbx 209 25 drug drug NN cord-002530-ao7kenbx 209 26 at at IN cord-002530-ao7kenbx 209 27 the the DT cord-002530-ao7kenbx 209 28 same same JJ cord-002530-ao7kenbx 209 29 time time NN cord-002530-ao7kenbx 209 30 as as IN cord-002530-ao7kenbx 209 31 infection infection NN cord-002530-ao7kenbx 209 32 . . . cord-002530-ao7kenbx 210 1 Treatment treatment NN cord-002530-ao7kenbx 210 2 at at IN cord-002530-ao7kenbx 210 3 24 24 CD cord-002530-ao7kenbx 210 4 HPI HPI NNP cord-002530-ao7kenbx 210 5 was be VBD cord-002530-ao7kenbx 210 6 ineffective ineffective JJ cord-002530-ao7kenbx 210 7 at at IN cord-002530-ao7kenbx 210 8 blocking block VBG cord-002530-ao7kenbx 210 9 IE2 ie2 JJ cord-002530-ao7kenbx 210 10 expression expression NN cord-002530-ao7kenbx 210 11 , , , cord-002530-ao7kenbx 210 12 suggesting suggest VBG cord-002530-ao7kenbx 210 13 a a DT cord-002530-ao7kenbx 210 14 window window NN cord-002530-ao7kenbx 210 15 in in IN cord-002530-ao7kenbx 210 16 which which WDT cord-002530-ao7kenbx 210 17 VCP vcp NN cord-002530-ao7kenbx 210 18 activity activity NN cord-002530-ao7kenbx 210 19 is be VBZ cord-002530-ao7kenbx 210 20 required require VBN cord-002530-ao7kenbx 210 21 for for IN cord-002530-ao7kenbx 210 22 regulation regulation NN cord-002530-ao7kenbx 210 23 of of IN cord-002530-ao7kenbx 210 24 MIE MIE NNP cord-002530-ao7kenbx 210 25 splicing splicing NN cord-002530-ao7kenbx 210 26 . . . cord-002530-ao7kenbx 211 1 Interestingly interestingly RB cord-002530-ao7kenbx 211 2 , , , cord-002530-ao7kenbx 211 3 blocking block VBG cord-002530-ao7kenbx 211 4 de de IN cord-002530-ao7kenbx 211 5 novo novo NNP cord-002530-ao7kenbx 211 6 protein protein NN cord-002530-ao7kenbx 211 7 translation translation NN cord-002530-ao7kenbx 211 8 by by IN cord-002530-ao7kenbx 211 9 cycloheximide cycloheximide NN cord-002530-ao7kenbx 211 10 treatment treatment NN cord-002530-ao7kenbx 211 11 , , , cord-002530-ao7kenbx 211 12 effectively effectively RB cord-002530-ao7kenbx 211 13 rescues rescue VBZ cord-002530-ao7kenbx 211 14 IE2 ie2 NN cord-002530-ao7kenbx 211 15 transcription transcription NN cord-002530-ao7kenbx 211 16 following follow VBG cord-002530-ao7kenbx 211 17 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 211 18 treatment treatment NN cord-002530-ao7kenbx 211 19 , , , cord-002530-ao7kenbx 211 20 suggesting suggest VBG cord-002530-ao7kenbx 211 21 the the DT cord-002530-ao7kenbx 211 22 inhibitory inhibitory JJ cord-002530-ao7kenbx 211 23 factor factor NN cord-002530-ao7kenbx 211 24 is be VBZ cord-002530-ao7kenbx 211 25 induced induce VBN cord-002530-ao7kenbx 211 26 by by IN cord-002530-ao7kenbx 211 27 virus virus NN cord-002530-ao7kenbx 211 28 infection infection NN cord-002530-ao7kenbx 211 29 ( ( -LRB- cord-002530-ao7kenbx 211 30 S11 S11 NNP cord-002530-ao7kenbx 211 31 Fig Fig NNP cord-002530-ao7kenbx 211 32 ) ) -RRB- cord-002530-ao7kenbx 211 33 . . . cord-002530-ao7kenbx 212 1 Although although IN cord-002530-ao7kenbx 212 2 not not RB cord-002530-ao7kenbx 212 3 common common JJ cord-002530-ao7kenbx 212 4 , , , cord-002530-ao7kenbx 212 5 there there EX cord-002530-ao7kenbx 212 6 are be VBP cord-002530-ao7kenbx 212 7 a a DT cord-002530-ao7kenbx 212 8 number number NN cord-002530-ao7kenbx 212 9 of of IN cord-002530-ao7kenbx 212 10 examples example NNS cord-002530-ao7kenbx 212 11 of of IN cord-002530-ao7kenbx 212 12 terminal terminal NN cord-002530-ao7kenbx 212 13 exon exon NN cord-002530-ao7kenbx 212 14 skipping skip VBG cord-002530-ao7kenbx 212 15 in in IN cord-002530-ao7kenbx 212 16 the the DT cord-002530-ao7kenbx 212 17 human human JJ cord-002530-ao7kenbx 212 18 genome genome NN cord-002530-ao7kenbx 212 19 , , , cord-002530-ao7kenbx 212 20 which which WDT cord-002530-ao7kenbx 212 21 would would MD cord-002530-ao7kenbx 212 22 be be VB cord-002530-ao7kenbx 212 23 analogous analogous JJ cord-002530-ao7kenbx 212 24 to to IN cord-002530-ao7kenbx 212 25 the the DT cord-002530-ao7kenbx 212 26 proposed propose VBN cord-002530-ao7kenbx 212 27 model model NN cord-002530-ao7kenbx 212 28 . . . cord-002530-ao7kenbx 213 1 Maturation maturation NN cord-002530-ao7kenbx 213 2 of of IN cord-002530-ao7kenbx 213 3 B b NN cord-002530-ao7kenbx 213 4 cells cell NNS cord-002530-ao7kenbx 213 5 to to IN cord-002530-ao7kenbx 213 6 differentiated differentiated JJ cord-002530-ao7kenbx 213 7 plasma plasma NN cord-002530-ao7kenbx 213 8 cells cell NNS cord-002530-ao7kenbx 213 9 results result NNS cord-002530-ao7kenbx 213 10 in in IN cord-002530-ao7kenbx 213 11 a a DT cord-002530-ao7kenbx 213 12 switch switch NN cord-002530-ao7kenbx 213 13 from from IN cord-002530-ao7kenbx 213 14 predominantly predominantly RB cord-002530-ao7kenbx 213 15 membrane membrane NN cord-002530-ao7kenbx 213 16 bound bind VBN cord-002530-ao7kenbx 213 17 IgM IgM NNP cord-002530-ao7kenbx 213 18 to to IN cord-002530-ao7kenbx 213 19 secreted secrete VBN cord-002530-ao7kenbx 213 20 IgM. IgM. NNP cord-002530-ao7kenbx 213 21 Studies Studies NNP cord-002530-ao7kenbx 214 1 have have VBP cord-002530-ao7kenbx 214 2 shown show VBN cord-002530-ao7kenbx 214 3 that that IN cord-002530-ao7kenbx 214 4 increased increase VBN cord-002530-ao7kenbx 214 5 expression expression NN cord-002530-ao7kenbx 214 6 of of IN cord-002530-ao7kenbx 214 7 the the DT cord-002530-ao7kenbx 214 8 polyadenylation polyadenylation NN cord-002530-ao7kenbx 214 9 factor factor NN cord-002530-ao7kenbx 214 10 cstF-64 cstF-64 NNP cord-002530-ao7kenbx 214 11 promotes promote VBZ cord-002530-ao7kenbx 214 12 polyadenylation polyadenylation NN cord-002530-ao7kenbx 214 13 upstream upstream RB cord-002530-ao7kenbx 214 14 of of IN cord-002530-ao7kenbx 214 15 the the DT cord-002530-ao7kenbx 214 16 exons exon NNS cord-002530-ao7kenbx 214 17 required require VBN cord-002530-ao7kenbx 214 18 for for IN cord-002530-ao7kenbx 214 19 membrane membrane NN cord-002530-ao7kenbx 214 20 bound bind VBN cord-002530-ao7kenbx 214 21 IgM IgM NNP cord-002530-ao7kenbx 214 22 resulting result VBG cord-002530-ao7kenbx 214 23 in in IN cord-002530-ao7kenbx 214 24 increased increase VBN cord-002530-ao7kenbx 214 25 expression expression NN cord-002530-ao7kenbx 214 26 of of IN cord-002530-ao7kenbx 214 27 the the DT cord-002530-ao7kenbx 214 28 secreted secrete VBN cord-002530-ao7kenbx 214 29 form form NN cord-002530-ao7kenbx 214 30 [ [ -LRB- cord-002530-ao7kenbx 214 31 46 46 CD cord-002530-ao7kenbx 214 32 , , , cord-002530-ao7kenbx 214 33 47 47 CD cord-002530-ao7kenbx 214 34 ] ] -RRB- cord-002530-ao7kenbx 214 35 . . . cord-002530-ao7kenbx 215 1 Tissue tissue NN cord-002530-ao7kenbx 215 2 specific specific JJ cord-002530-ao7kenbx 215 3 regulation regulation NN cord-002530-ao7kenbx 215 4 of of IN cord-002530-ao7kenbx 215 5 calcitonin calcitonin NN cord-002530-ao7kenbx 215 6 peptide peptide NN cord-002530-ao7kenbx 215 7 is be VBZ cord-002530-ao7kenbx 215 8 also also RB cord-002530-ao7kenbx 215 9 regulated regulate VBN cord-002530-ao7kenbx 215 10 through through IN cord-002530-ao7kenbx 215 11 differential differential JJ cord-002530-ao7kenbx 215 12 polyadenylation polyadenylation NN cord-002530-ao7kenbx 215 13 of of IN cord-002530-ao7kenbx 215 14 an an DT cord-002530-ao7kenbx 215 15 embedded embed VBN cord-002530-ao7kenbx 215 16 terminal terminal NN cord-002530-ao7kenbx 215 17 exon exon NN cord-002530-ao7kenbx 215 18 [ [ -LRB- cord-002530-ao7kenbx 215 19 48 48 CD cord-002530-ao7kenbx 215 20 ] ] -RRB- cord-002530-ao7kenbx 215 21 . . . cord-002530-ao7kenbx 216 1 Here here RB cord-002530-ao7kenbx 216 2 , , , cord-002530-ao7kenbx 216 3 the the DT cord-002530-ao7kenbx 216 4 splicing splicing NN cord-002530-ao7kenbx 216 5 factor factor NN cord-002530-ao7kenbx 216 6 SRSF3 SRSF3 NNP cord-002530-ao7kenbx 216 7 ( ( -LRB- cord-002530-ao7kenbx 216 8 SRp20 SRp20 NNP cord-002530-ao7kenbx 216 9 ) ) -RRB- cord-002530-ao7kenbx 216 10 binds bind VBZ cord-002530-ao7kenbx 216 11 to to IN cord-002530-ao7kenbx 216 12 a a DT cord-002530-ao7kenbx 216 13 polyA polyA NNP cord-002530-ao7kenbx 216 14 enhancer enhancer NN cord-002530-ao7kenbx 216 15 sequence sequence NN cord-002530-ao7kenbx 216 16 and and CC cord-002530-ao7kenbx 216 17 directs direct VBZ cord-002530-ao7kenbx 216 18 polyadenylation polyadenylation NN cord-002530-ao7kenbx 216 19 of of IN cord-002530-ao7kenbx 216 20 the the DT cord-002530-ao7kenbx 216 21 upstream upstream JJ cord-002530-ao7kenbx 216 22 polyA polyA NNP cord-002530-ao7kenbx 216 23 site site NN cord-002530-ao7kenbx 216 24 through through IN cord-002530-ao7kenbx 216 25 recruitment recruitment NN cord-002530-ao7kenbx 216 26 of of IN cord-002530-ao7kenbx 216 27 polyA polyA NNP cord-002530-ao7kenbx 216 28 factors factor NNS cord-002530-ao7kenbx 216 29 . . . cord-002530-ao7kenbx 217 1 Restricting restrict VBG cord-002530-ao7kenbx 217 2 SRSF3 srsf3 NN cord-002530-ao7kenbx 217 3 activity activity NN cord-002530-ao7kenbx 217 4 results result NNS cord-002530-ao7kenbx 217 5 in in IN cord-002530-ao7kenbx 217 6 removal removal NN cord-002530-ao7kenbx 217 7 of of IN cord-002530-ao7kenbx 217 8 the the DT cord-002530-ao7kenbx 217 9 upstream upstream JJ cord-002530-ao7kenbx 217 10 terminal terminal NN cord-002530-ao7kenbx 217 11 exon exon NN cord-002530-ao7kenbx 217 12 by by IN cord-002530-ao7kenbx 217 13 splicing splice VBG cord-002530-ao7kenbx 217 14 and and CC cord-002530-ao7kenbx 217 15 enhanced enhanced JJ cord-002530-ao7kenbx 217 16 expression expression NN cord-002530-ao7kenbx 217 17 of of IN cord-002530-ao7kenbx 217 18 the the DT cord-002530-ao7kenbx 217 19 downstream downstream JJ cord-002530-ao7kenbx 217 20 terminal terminal NN cord-002530-ao7kenbx 217 21 exon exon NN cord-002530-ao7kenbx 217 22 . . . cord-002530-ao7kenbx 218 1 In in IN cord-002530-ao7kenbx 218 2 these these DT cord-002530-ao7kenbx 218 3 examples example NNS cord-002530-ao7kenbx 218 4 splicing splicing NN cord-002530-ao7kenbx 218 5 is be VBZ cord-002530-ao7kenbx 218 6 directly directly RB cord-002530-ao7kenbx 218 7 linked link VBN cord-002530-ao7kenbx 218 8 to to IN cord-002530-ao7kenbx 218 9 cellular cellular JJ cord-002530-ao7kenbx 218 10 differentiation differentiation NN cord-002530-ao7kenbx 218 11 , , , cord-002530-ao7kenbx 218 12 in in IN cord-002530-ao7kenbx 218 13 the the DT cord-002530-ao7kenbx 218 14 case case NN cord-002530-ao7kenbx 218 15 of of IN cord-002530-ao7kenbx 218 16 IgM IgM NNP cord-002530-ao7kenbx 218 17 , , , cord-002530-ao7kenbx 218 18 and and CC cord-002530-ao7kenbx 218 19 tissue tissue NN cord-002530-ao7kenbx 218 20 specificity specificity NN cord-002530-ao7kenbx 218 21 , , , cord-002530-ao7kenbx 218 22 in in IN cord-002530-ao7kenbx 218 23 the the DT cord-002530-ao7kenbx 218 24 case case NN cord-002530-ao7kenbx 218 25 of of IN cord-002530-ao7kenbx 218 26 calcitonin calcitonin NN cord-002530-ao7kenbx 218 27 . . . cord-002530-ao7kenbx 219 1 These these DT cord-002530-ao7kenbx 219 2 factors factor NNS cord-002530-ao7kenbx 219 3 are be VBP cord-002530-ao7kenbx 219 4 fundamental fundamental JJ cord-002530-ao7kenbx 219 5 to to IN cord-002530-ao7kenbx 219 6 the the DT cord-002530-ao7kenbx 219 7 regulation regulation NN cord-002530-ao7kenbx 219 8 of of IN cord-002530-ao7kenbx 219 9 HCMV HCMV NNP cord-002530-ao7kenbx 219 10 latency latency NN cord-002530-ao7kenbx 219 11 with with IN cord-002530-ao7kenbx 219 12 cell cell NN cord-002530-ao7kenbx 219 13 type type NN cord-002530-ao7kenbx 219 14 specificity specificity NN cord-002530-ao7kenbx 219 15 determining determine VBG cord-002530-ao7kenbx 219 16 the the DT cord-002530-ao7kenbx 219 17 site site NN cord-002530-ao7kenbx 219 18 of of IN cord-002530-ao7kenbx 219 19 latency latency NN cord-002530-ao7kenbx 219 20 and and CC cord-002530-ao7kenbx 219 21 differentiation differentiation NN cord-002530-ao7kenbx 219 22 of of IN cord-002530-ao7kenbx 219 23 latently latently RB cord-002530-ao7kenbx 219 24 infected infect VBN cord-002530-ao7kenbx 219 25 cells cell NNS cord-002530-ao7kenbx 219 26 linked link VBN cord-002530-ao7kenbx 219 27 to to IN cord-002530-ao7kenbx 219 28 reactivation reactivation NN cord-002530-ao7kenbx 219 29 [ [ -LRB- cord-002530-ao7kenbx 219 30 13 13 CD cord-002530-ao7kenbx 219 31 , , , cord-002530-ao7kenbx 219 32 14 14 CD cord-002530-ao7kenbx 219 33 ] ] -RRB- cord-002530-ao7kenbx 219 34 . . . cord-002530-ao7kenbx 220 1 Given give VBN cord-002530-ao7kenbx 220 2 the the DT cord-002530-ao7kenbx 220 3 central central JJ cord-002530-ao7kenbx 220 4 role role NN cord-002530-ao7kenbx 220 5 of of IN cord-002530-ao7kenbx 220 6 IE2 ie2 NN cord-002530-ao7kenbx 220 7 in in IN cord-002530-ao7kenbx 220 8 determining determine VBG cord-002530-ao7kenbx 220 9 virus virus NN cord-002530-ao7kenbx 220 10 replication replication NN cord-002530-ao7kenbx 220 11 , , , cord-002530-ao7kenbx 220 12 linking link VBG cord-002530-ao7kenbx 220 13 regulation regulation NN cord-002530-ao7kenbx 220 14 of of IN cord-002530-ao7kenbx 220 15 MIE MIE NNP cord-002530-ao7kenbx 220 16 splicing splice VBG cord-002530-ao7kenbx 220 17 to to IN cord-002530-ao7kenbx 220 18 cellular cellular JJ cord-002530-ao7kenbx 220 19 differentiation differentiation NN cord-002530-ao7kenbx 220 20 and and CC cord-002530-ao7kenbx 220 21 tissue tissue NN cord-002530-ao7kenbx 220 22 specificity specificity NN cord-002530-ao7kenbx 220 23 would would MD cord-002530-ao7kenbx 220 24 be be VB cord-002530-ao7kenbx 220 25 a a DT cord-002530-ao7kenbx 220 26 potent potent JJ cord-002530-ao7kenbx 220 27 mechanism mechanism NN cord-002530-ao7kenbx 220 28 of of IN cord-002530-ao7kenbx 220 29 regulating regulate VBG cord-002530-ao7kenbx 220 30 the the DT cord-002530-ao7kenbx 220 31 establishment establishment NN cord-002530-ao7kenbx 220 32 , , , cord-002530-ao7kenbx 220 33 maintenance maintenance NN cord-002530-ao7kenbx 220 34 and and CC cord-002530-ao7kenbx 220 35 reactivation reactivation NN cord-002530-ao7kenbx 220 36 of of IN cord-002530-ao7kenbx 220 37 latency latency NN cord-002530-ao7kenbx 220 38 in in IN cord-002530-ao7kenbx 220 39 HCMV HCMV NNP cord-002530-ao7kenbx 220 40 . . . cord-002530-ao7kenbx 221 1 Experiments experiment NNS cord-002530-ao7kenbx 221 2 are be VBP cord-002530-ao7kenbx 221 3 currently currently RB cord-002530-ao7kenbx 221 4 underway underway JJ cord-002530-ao7kenbx 221 5 to to TO cord-002530-ao7kenbx 221 6 determine determine VB cord-002530-ao7kenbx 221 7 whether whether IN cord-002530-ao7kenbx 221 8 regulation regulation NN cord-002530-ao7kenbx 221 9 of of IN cord-002530-ao7kenbx 221 10 MIE MIE NNP cord-002530-ao7kenbx 221 11 splicing splicing NN cord-002530-ao7kenbx 221 12 by by IN cord-002530-ao7kenbx 221 13 VCP VCP NNP cord-002530-ao7kenbx 221 14 follows follow VBZ cord-002530-ao7kenbx 221 15 a a DT cord-002530-ao7kenbx 221 16 similar similar JJ cord-002530-ao7kenbx 221 17 paradigm paradigm NN cord-002530-ao7kenbx 221 18 to to IN cord-002530-ao7kenbx 221 19 cellular cellular JJ cord-002530-ao7kenbx 221 20 examples example NNS cord-002530-ao7kenbx 221 21 and and CC cord-002530-ao7kenbx 221 22 whether whether IN cord-002530-ao7kenbx 221 23 such such JJ cord-002530-ao7kenbx 221 24 regulation regulation NN cord-002530-ao7kenbx 221 25 is be VBZ cord-002530-ao7kenbx 221 26 involved involve VBN cord-002530-ao7kenbx 221 27 in in IN cord-002530-ao7kenbx 221 28 HCMV HCMV NNP cord-002530-ao7kenbx 221 29 latency latency NN cord-002530-ao7kenbx 221 30 . . . cord-002530-ao7kenbx 222 1 Finally finally RB cord-002530-ao7kenbx 222 2 , , , cord-002530-ao7kenbx 222 3 as as IN cord-002530-ao7kenbx 222 4 VCP VCP NNP cord-002530-ao7kenbx 222 5 is be VBZ cord-002530-ao7kenbx 222 6 clearly clearly RB cord-002530-ao7kenbx 222 7 essential essential JJ cord-002530-ao7kenbx 222 8 for for IN cord-002530-ao7kenbx 222 9 virus virus NN cord-002530-ao7kenbx 222 10 replication replication NN cord-002530-ao7kenbx 222 11 , , , cord-002530-ao7kenbx 222 12 small small JJ cord-002530-ao7kenbx 222 13 molecule molecule NN cord-002530-ao7kenbx 222 14 inhibitors inhibitor NNS cord-002530-ao7kenbx 222 15 of of IN cord-002530-ao7kenbx 222 16 VCP VCP NNP cord-002530-ao7kenbx 222 17 are be VBP cord-002530-ao7kenbx 222 18 potentially potentially RB cord-002530-ao7kenbx 222 19 attractive attractive JJ cord-002530-ao7kenbx 222 20 antiviral antiviral JJ cord-002530-ao7kenbx 222 21 candidates candidate NNS cord-002530-ao7kenbx 222 22 . . . cord-002530-ao7kenbx 223 1 HCMV HCMV NNP cord-002530-ao7kenbx 223 2 - - HYPH cord-002530-ao7kenbx 223 3 related relate VBN cord-002530-ao7kenbx 223 4 illness illness NN cord-002530-ao7kenbx 223 5 accounts account VBZ cord-002530-ao7kenbx 223 6 for for IN cord-002530-ao7kenbx 223 7 more more JJR cord-002530-ao7kenbx 223 8 than than IN cord-002530-ao7kenbx 223 9 60 60 CD cord-002530-ao7kenbx 223 10 % % NN cord-002530-ao7kenbx 223 11 of of IN cord-002530-ao7kenbx 223 12 diseases disease NNS cord-002530-ao7kenbx 223 13 associated associate VBN cord-002530-ao7kenbx 223 14 with with IN cord-002530-ao7kenbx 223 15 solid solid JJ cord-002530-ao7kenbx 223 16 organ organ NN cord-002530-ao7kenbx 223 17 transplant transplant NN cord-002530-ao7kenbx 223 18 patients patient NNS cord-002530-ao7kenbx 223 19 . . . cord-002530-ao7kenbx 224 1 Prolonged prolonged JJ cord-002530-ao7kenbx 224 2 treatment treatment NN cord-002530-ao7kenbx 224 3 , , , cord-002530-ao7kenbx 224 4 especially especially RB cord-002530-ao7kenbx 224 5 in in IN cord-002530-ao7kenbx 224 6 patients patient NNS cord-002530-ao7kenbx 224 7 with with IN cord-002530-ao7kenbx 224 8 severely severely RB cord-002530-ao7kenbx 224 9 suppressed suppress VBN cord-002530-ao7kenbx 224 10 immune immune JJ cord-002530-ao7kenbx 224 11 systems system NNS cord-002530-ao7kenbx 224 12 , , , cord-002530-ao7kenbx 224 13 greatly greatly RB cord-002530-ao7kenbx 224 14 increases increase VBZ cord-002530-ao7kenbx 224 15 the the DT cord-002530-ao7kenbx 224 16 risk risk NN cord-002530-ao7kenbx 224 17 of of IN cord-002530-ao7kenbx 224 18 antiviral antiviral JJ cord-002530-ao7kenbx 224 19 resistance resistance NN cord-002530-ao7kenbx 224 20 [ [ -LRB- cord-002530-ao7kenbx 224 21 49 49 CD cord-002530-ao7kenbx 224 22 ] ] -RRB- cord-002530-ao7kenbx 225 1 [ [ -LRB- cord-002530-ao7kenbx 225 2 50 50 CD cord-002530-ao7kenbx 225 3 ] ] -RRB- cord-002530-ao7kenbx 225 4 [ [ -LRB- cord-002530-ao7kenbx 225 5 51 51 CD cord-002530-ao7kenbx 225 6 ] ] -RRB- cord-002530-ao7kenbx 225 7 . . . cord-002530-ao7kenbx 226 1 Very very RB cord-002530-ao7kenbx 226 2 few few JJ cord-002530-ao7kenbx 226 3 antivirals antiviral NNS cord-002530-ao7kenbx 226 4 have have VBP cord-002530-ao7kenbx 226 5 been be VBN cord-002530-ao7kenbx 226 6 developed develop VBN cord-002530-ao7kenbx 226 7 for for IN cord-002530-ao7kenbx 226 8 use use NN cord-002530-ao7kenbx 226 9 against against IN cord-002530-ao7kenbx 226 10 HCMV HCMV NNP cord-002530-ao7kenbx 226 11 since since IN cord-002530-ao7kenbx 226 12 the the DT cord-002530-ao7kenbx 226 13 licensing licensing NN cord-002530-ao7kenbx 226 14 of of IN cord-002530-ao7kenbx 226 15 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 226 16 , , , cord-002530-ao7kenbx 226 17 and and CC cord-002530-ao7kenbx 226 18 of of IN cord-002530-ao7kenbx 226 19 these these DT cord-002530-ao7kenbx 226 20 , , , cord-002530-ao7kenbx 226 21 the the DT cord-002530-ao7kenbx 226 22 same same JJ cord-002530-ao7kenbx 226 23 viral viral JJ cord-002530-ao7kenbx 226 24 genes gene NNS cord-002530-ao7kenbx 226 25 are be VBP cord-002530-ao7kenbx 226 26 targeted target VBN cord-002530-ao7kenbx 226 27 , , , cord-002530-ao7kenbx 226 28 reducing reduce VBG cord-002530-ao7kenbx 226 29 the the DT cord-002530-ao7kenbx 226 30 likely likely JJ cord-002530-ao7kenbx 226 31 usefulness usefulness NN cord-002530-ao7kenbx 226 32 of of IN cord-002530-ao7kenbx 226 33 these these DT cord-002530-ao7kenbx 226 34 drugs drug NNS cord-002530-ao7kenbx 226 35 against against IN cord-002530-ao7kenbx 226 36 resistant resistant JJ cord-002530-ao7kenbx 226 37 strains strain NNS cord-002530-ao7kenbx 226 38 [ [ -LRB- cord-002530-ao7kenbx 226 39 52 52 CD cord-002530-ao7kenbx 226 40 ] ] -RRB- cord-002530-ao7kenbx 226 41 . . . cord-002530-ao7kenbx 227 1 An an DT cord-002530-ao7kenbx 227 2 alternative alternative JJ cord-002530-ao7kenbx 227 3 strategy strategy NN cord-002530-ao7kenbx 227 4 for for IN cord-002530-ao7kenbx 227 5 the the DT cord-002530-ao7kenbx 227 6 development development NN cord-002530-ao7kenbx 227 7 of of IN cord-002530-ao7kenbx 227 8 novel novel JJ cord-002530-ao7kenbx 227 9 antivirals antiviral NNS cord-002530-ao7kenbx 227 10 involves involve VBZ cord-002530-ao7kenbx 227 11 targeting target VBG cord-002530-ao7kenbx 227 12 of of IN cord-002530-ao7kenbx 227 13 host host NN cord-002530-ao7kenbx 227 14 genes gene NNS cord-002530-ao7kenbx 227 15 required require VBN cord-002530-ao7kenbx 227 16 by by IN cord-002530-ao7kenbx 227 17 the the DT cord-002530-ao7kenbx 227 18 virus virus NN cord-002530-ao7kenbx 227 19 for for IN cord-002530-ao7kenbx 227 20 successful successful JJ cord-002530-ao7kenbx 227 21 replication replication NN cord-002530-ao7kenbx 227 22 . . . cord-002530-ao7kenbx 228 1 VCP VCP NNP cord-002530-ao7kenbx 228 2 has have VBZ cord-002530-ao7kenbx 228 3 been be VBN cord-002530-ao7kenbx 228 4 identified identify VBN cord-002530-ao7kenbx 228 5 as as IN cord-002530-ao7kenbx 228 6 a a DT cord-002530-ao7kenbx 228 7 potential potential JJ cord-002530-ao7kenbx 228 8 anti anti JJ cord-002530-ao7kenbx 228 9 - - JJ cord-002530-ao7kenbx 228 10 cancer cancer JJ cord-002530-ao7kenbx 228 11 target target NN cord-002530-ao7kenbx 228 12 and and CC cord-002530-ao7kenbx 228 13 as as RB cord-002530-ao7kenbx 228 14 such such PDT cord-002530-ao7kenbx 228 15 a a DT cord-002530-ao7kenbx 228 16 number number NN cord-002530-ao7kenbx 228 17 of of IN cord-002530-ao7kenbx 228 18 small small JJ cord-002530-ao7kenbx 228 19 molecule molecule NN cord-002530-ao7kenbx 228 20 inhibitors inhibitor NNS cord-002530-ao7kenbx 228 21 have have VBP cord-002530-ao7kenbx 228 22 been be VBN cord-002530-ao7kenbx 228 23 developed develop VBN cord-002530-ao7kenbx 228 24 , , , cord-002530-ao7kenbx 229 1 the the DT cord-002530-ao7kenbx 229 2 most most RBS cord-002530-ao7kenbx 229 3 potent potent JJ cord-002530-ao7kenbx 229 4 of of IN cord-002530-ao7kenbx 229 5 which which WDT cord-002530-ao7kenbx 229 6 is be VBZ cord-002530-ao7kenbx 229 7 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 229 8 [ [ -LRB- cord-002530-ao7kenbx 229 9 36 36 CD cord-002530-ao7kenbx 229 10 ] ] -RRB- cord-002530-ao7kenbx 229 11 . . . cord-002530-ao7kenbx 230 1 We -PRON- PRP cord-002530-ao7kenbx 230 2 show show VBP cord-002530-ao7kenbx 230 3 that that IN cord-002530-ao7kenbx 230 4 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 230 5 is be VBZ cord-002530-ao7kenbx 230 6 10 10 CD cord-002530-ao7kenbx 230 7 times time NNS cord-002530-ao7kenbx 230 8 more more RBR cord-002530-ao7kenbx 230 9 potent potent JJ cord-002530-ao7kenbx 230 10 than than IN cord-002530-ao7kenbx 230 11 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 230 12 at at IN cord-002530-ao7kenbx 230 13 equivalent equivalent JJ cord-002530-ao7kenbx 230 14 concentrations concentration NNS cord-002530-ao7kenbx 230 15 , , , cord-002530-ao7kenbx 230 16 with with IN cord-002530-ao7kenbx 230 17 little little JJ cord-002530-ao7kenbx 230 18 sign sign NN cord-002530-ao7kenbx 230 19 of of IN cord-002530-ao7kenbx 230 20 toxicity toxicity NN cord-002530-ao7kenbx 230 21 at at IN cord-002530-ao7kenbx 230 22 active active JJ cord-002530-ao7kenbx 230 23 levels level NNS cord-002530-ao7kenbx 230 24 . . . cord-002530-ao7kenbx 231 1 Whether whether IN cord-002530-ao7kenbx 231 2 the the DT cord-002530-ao7kenbx 231 3 drug drug NN cord-002530-ao7kenbx 231 4 is be VBZ cord-002530-ao7kenbx 231 5 toxic toxic JJ cord-002530-ao7kenbx 231 6 in in IN cord-002530-ao7kenbx 231 7 vivo vivo NN cord-002530-ao7kenbx 231 8 remains remain VBZ cord-002530-ao7kenbx 231 9 to to TO cord-002530-ao7kenbx 231 10 be be VB cord-002530-ao7kenbx 231 11 determined determine VBN cord-002530-ao7kenbx 231 12 . . . cord-002530-ao7kenbx 232 1 Deletion deletion NN cord-002530-ao7kenbx 232 2 of of IN cord-002530-ao7kenbx 232 3 VCP VCP NNP cord-002530-ao7kenbx 232 4 in in IN cord-002530-ao7kenbx 232 5 transgenic transgenic JJ cord-002530-ao7kenbx 232 6 mice mouse NNS cord-002530-ao7kenbx 232 7 is be VBZ cord-002530-ao7kenbx 232 8 non non JJ cord-002530-ao7kenbx 232 9 - - JJ cord-002530-ao7kenbx 232 10 viable viable JJ cord-002530-ao7kenbx 232 11 and and CC cord-002530-ao7kenbx 232 12 naturally naturally RB cord-002530-ao7kenbx 232 13 occurring occur VBG cord-002530-ao7kenbx 232 14 mutations mutation NNS cord-002530-ao7kenbx 232 15 in in IN cord-002530-ao7kenbx 232 16 humans human NNS cord-002530-ao7kenbx 232 17 are be VBP cord-002530-ao7kenbx 232 18 linked link VBN cord-002530-ao7kenbx 232 19 to to IN cord-002530-ao7kenbx 232 20 severe severe JJ cord-002530-ao7kenbx 232 21 developmental developmental JJ cord-002530-ao7kenbx 232 22 defects defect NNS cord-002530-ao7kenbx 232 23 [ [ -LRB- cord-002530-ao7kenbx 232 24 21 21 CD cord-002530-ao7kenbx 232 25 , , , cord-002530-ao7kenbx 232 26 53 53 CD cord-002530-ao7kenbx 232 27 ] ] -RRB- cord-002530-ao7kenbx 232 28 . . . cord-002530-ao7kenbx 233 1 However however RB cord-002530-ao7kenbx 233 2 , , , cord-002530-ao7kenbx 233 3 transient transient JJ cord-002530-ao7kenbx 233 4 inhibition inhibition NN cord-002530-ao7kenbx 233 5 of of IN cord-002530-ao7kenbx 233 6 VCP VCP NNP cord-002530-ao7kenbx 233 7 by by IN cord-002530-ao7kenbx 233 8 small small JJ cord-002530-ao7kenbx 233 9 molecule molecule NN cord-002530-ao7kenbx 233 10 inhibitors inhibitor NNS cord-002530-ao7kenbx 233 11 may may MD cord-002530-ao7kenbx 233 12 be be VB cord-002530-ao7kenbx 233 13 a a DT cord-002530-ao7kenbx 233 14 viable viable JJ cord-002530-ao7kenbx 233 15 treatment treatment NN cord-002530-ao7kenbx 233 16 option option NN cord-002530-ao7kenbx 233 17 , , , cord-002530-ao7kenbx 233 18 especially especially RB cord-002530-ao7kenbx 233 19 in in IN cord-002530-ao7kenbx 233 20 patients patient NNS cord-002530-ao7kenbx 233 21 where where WRB cord-002530-ao7kenbx 233 22 resistance resistance NN cord-002530-ao7kenbx 233 23 to to IN cord-002530-ao7kenbx 233 24 current current JJ cord-002530-ao7kenbx 233 25 antivirals antiviral NNS cord-002530-ao7kenbx 233 26 poses pose VBZ cord-002530-ao7kenbx 233 27 a a DT cord-002530-ao7kenbx 233 28 significant significant JJ cord-002530-ao7kenbx 233 29 risk risk NN cord-002530-ao7kenbx 233 30 to to IN cord-002530-ao7kenbx 233 31 health health NN cord-002530-ao7kenbx 233 32 . . . cord-002530-ao7kenbx 234 1 Normal normal JJ cord-002530-ao7kenbx 234 2 Human Human NNP cord-002530-ao7kenbx 234 3 Dermal Dermal NNP cord-002530-ao7kenbx 234 4 Fibroblasts Fibroblasts NNPS cord-002530-ao7kenbx 234 5 ( ( -LRB- cord-002530-ao7kenbx 234 6 NHDF NHDF NNP cord-002530-ao7kenbx 234 7 ; ; : cord-002530-ao7kenbx 234 8 Gibco Gibco NNP cord-002530-ao7kenbx 234 9 ) ) -RRB- cord-002530-ao7kenbx 234 10 were be VBD cord-002530-ao7kenbx 234 11 maintained maintain VBN cord-002530-ao7kenbx 234 12 in in IN cord-002530-ao7kenbx 234 13 Dulbecco Dulbecco NNP cord-002530-ao7kenbx 234 14 's 's POS cord-002530-ao7kenbx 234 15 modified modify VBN cord-002530-ao7kenbx 234 16 high high JJ cord-002530-ao7kenbx 234 17 glucose glucose NN cord-002530-ao7kenbx 234 18 media medium NNS cord-002530-ao7kenbx 234 19 ( ( -LRB- cord-002530-ao7kenbx 234 20 DMEM DMEM NNP cord-002530-ao7kenbx 234 21 ; ; : cord-002530-ao7kenbx 234 22 Sigma Sigma NNP cord-002530-ao7kenbx 234 23 ) ) -RRB- cord-002530-ao7kenbx 234 24 supplemented supplement VBD cord-002530-ao7kenbx 234 25 with with IN cord-002530-ao7kenbx 234 26 10 10 CD cord-002530-ao7kenbx 234 27 % % NN cord-002530-ao7kenbx 234 28 fetal fetal JJ cord-002530-ao7kenbx 234 29 bovine bovine JJ cord-002530-ao7kenbx 234 30 serum serum NN cord-002530-ao7kenbx 234 31 ( ( -LRB- cord-002530-ao7kenbx 234 32 FBS FBS NNP cord-002530-ao7kenbx 234 33 ; ; : cord-002530-ao7kenbx 234 34 Gibco Gibco NNP cord-002530-ao7kenbx 234 35 ) ) -RRB- cord-002530-ao7kenbx 234 36 and and CC cord-002530-ao7kenbx 234 37 1 1 CD cord-002530-ao7kenbx 234 38 % % NN cord-002530-ao7kenbx 234 39 penicillin penicillin NN cord-002530-ao7kenbx 234 40 - - HYPH cord-002530-ao7kenbx 234 41 streptomycin streptomycin NNS cord-002530-ao7kenbx 234 42 ( ( -LRB- cord-002530-ao7kenbx 234 43 Invitrogen Invitrogen NNP cord-002530-ao7kenbx 234 44 ) ) -RRB- cord-002530-ao7kenbx 234 45 . . . cord-002530-ao7kenbx 235 1 A a DT cord-002530-ao7kenbx 235 2 low low JJ cord-002530-ao7kenbx 235 3 passage passage NN cord-002530-ao7kenbx 235 4 HCMV HCMV NNP cord-002530-ao7kenbx 235 5 strain strain NN cord-002530-ao7kenbx 235 6 TB40E tb40e NN cord-002530-ao7kenbx 235 7 , , , cord-002530-ao7kenbx 235 8 which which WDT cord-002530-ao7kenbx 235 9 expresses express VBZ cord-002530-ao7kenbx 235 10 GFP GFP NNP cord-002530-ao7kenbx 235 11 from from IN cord-002530-ao7kenbx 235 12 an an DT cord-002530-ao7kenbx 235 13 SV40 SV40 NNP cord-002530-ao7kenbx 235 14 promoter promoter NN cord-002530-ao7kenbx 235 15 was be VBD cord-002530-ao7kenbx 235 16 used use VBN cord-002530-ao7kenbx 235 17 for for IN cord-002530-ao7kenbx 235 18 siRNA siRNA NNP cord-002530-ao7kenbx 235 19 library library NN cord-002530-ao7kenbx 235 20 screening screening NN cord-002530-ao7kenbx 235 21 , , , cord-002530-ao7kenbx 235 22 western western JJ cord-002530-ao7kenbx 235 23 blot blot NN cord-002530-ao7kenbx 235 24 analysis analysis NN cord-002530-ao7kenbx 235 25 , , , cord-002530-ao7kenbx 235 26 and and CC cord-002530-ao7kenbx 235 27 northern northern JJ cord-002530-ao7kenbx 235 28 blot blot NN cord-002530-ao7kenbx 235 29 analysis analysis NN cord-002530-ao7kenbx 235 30 . . . cord-002530-ao7kenbx 236 1 Laboratory laboratory NN cord-002530-ao7kenbx 236 2 adapted adapt VBD cord-002530-ao7kenbx 236 3 HCMV HCMV NNP cord-002530-ao7kenbx 236 4 strain strain NN cord-002530-ao7kenbx 236 5 AD169 AD169 NNP cord-002530-ao7kenbx 236 6 was be VBD cord-002530-ao7kenbx 236 7 used use VBN cord-002530-ao7kenbx 236 8 for for IN cord-002530-ao7kenbx 236 9 immunofluorescence immunofluorescence NN cord-002530-ao7kenbx 236 10 experiments experiment NNS cord-002530-ao7kenbx 236 11 . . . cord-002530-ao7kenbx 237 1 The the DT cord-002530-ao7kenbx 237 2 Human Human NNP cord-002530-ao7kenbx 237 3 siGENOME siGENOME NNP cord-002530-ao7kenbx 237 4 siRNA siRNA NNP cord-002530-ao7kenbx 237 5 Library Library NNP cord-002530-ao7kenbx 237 6 that that WDT cord-002530-ao7kenbx 237 7 targets target VBZ cord-002530-ao7kenbx 237 8 140 140 CD cord-002530-ao7kenbx 237 9 membrane membrane NN cord-002530-ao7kenbx 237 10 trafficking trafficking NN cord-002530-ao7kenbx 237 11 genes gene NNS cord-002530-ao7kenbx 237 12 ( ( -LRB- cord-002530-ao7kenbx 237 13 4 4 CD cord-002530-ao7kenbx 237 14 siR siR NNP cord-002530-ao7kenbx 237 15 - - HYPH cord-002530-ao7kenbx 237 16 NAs na NNS cord-002530-ao7kenbx 237 17 per per IN cord-002530-ao7kenbx 237 18 gene gene NN cord-002530-ao7kenbx 237 19 ; ; : cord-002530-ao7kenbx 237 20 Dharmacon Dharmacon NNP cord-002530-ao7kenbx 237 21 , , , cord-002530-ao7kenbx 237 22 Inc. Inc. NNP cord-002530-ao7kenbx 237 23 ) ) -RRB- cord-002530-ao7kenbx 237 24 and and CC cord-002530-ao7kenbx 237 25 20 20 CD cord-002530-ao7kenbx 237 26 other other JJ cord-002530-ao7kenbx 237 27 selected select VBN cord-002530-ao7kenbx 237 28 genes gene NNS cord-002530-ao7kenbx 237 29 were be VBD cord-002530-ao7kenbx 237 30 included include VBN cord-002530-ao7kenbx 237 31 in in IN cord-002530-ao7kenbx 237 32 the the DT cord-002530-ao7kenbx 237 33 primary primary JJ cord-002530-ao7kenbx 237 34 screen screen NN cord-002530-ao7kenbx 237 35 . . . cord-002530-ao7kenbx 238 1 In in IN cord-002530-ao7kenbx 238 2 brief brief NN cord-002530-ao7kenbx 238 3 , , , cord-002530-ao7kenbx 238 4 NHDFs NHDFs NNPS cord-002530-ao7kenbx 238 5 were be VBD cord-002530-ao7kenbx 238 6 seeded seed VBN cord-002530-ao7kenbx 238 7 in in IN cord-002530-ao7kenbx 238 8 96-well 96-well CD cord-002530-ao7kenbx 238 9 plate plate NN cord-002530-ao7kenbx 238 10 a a DT cord-002530-ao7kenbx 238 11 day day NN cord-002530-ao7kenbx 238 12 before before IN cord-002530-ao7kenbx 238 13 siRNA siRNA NNP cord-002530-ao7kenbx 238 14 transfection transfection NN cord-002530-ao7kenbx 238 15 . . . cord-002530-ao7kenbx 239 1 Next next JJ cord-002530-ao7kenbx 239 2 day day NN cord-002530-ao7kenbx 239 3 , , , cord-002530-ao7kenbx 239 4 cells cell NNS cord-002530-ao7kenbx 239 5 reached reach VBD cord-002530-ao7kenbx 239 6 90 90 CD cord-002530-ao7kenbx 239 7 - - SYM cord-002530-ao7kenbx 239 8 95 95 CD cord-002530-ao7kenbx 239 9 % % NN cord-002530-ao7kenbx 239 10 confluency confluency NN cord-002530-ao7kenbx 239 11 and and CC cord-002530-ao7kenbx 239 12 were be VBD cord-002530-ao7kenbx 239 13 transfected transfecte VBN cord-002530-ao7kenbx 239 14 with with IN cord-002530-ao7kenbx 239 15 siRNA siRNA NNP cord-002530-ao7kenbx 239 16 twice twice PDT cord-002530-ao7kenbx 239 17 ( ( -LRB- cord-002530-ao7kenbx 239 18 4 4 CD cord-002530-ao7kenbx 239 19 hours hour NNS cord-002530-ao7kenbx 239 20 apart apart RB cord-002530-ao7kenbx 239 21 between between IN cord-002530-ao7kenbx 239 22 first first JJ cord-002530-ao7kenbx 239 23 and and CC cord-002530-ao7kenbx 239 24 second second JJ cord-002530-ao7kenbx 239 25 transfections transfection NNS cord-002530-ao7kenbx 239 26 ) ) -RRB- cord-002530-ao7kenbx 239 27 using use VBG cord-002530-ao7kenbx 239 28 Lipofectamine Lipofectamine NNP cord-002530-ao7kenbx 239 29 RNAiMAX RNAiMAX NNP cord-002530-ao7kenbx 239 30 ( ( -LRB- cord-002530-ao7kenbx 239 31 Invitrogen Invitrogen NNP cord-002530-ao7kenbx 239 32 ) ) -RRB- cord-002530-ao7kenbx 239 33 according accord VBG cord-002530-ao7kenbx 239 34 to to IN cord-002530-ao7kenbx 239 35 the the DT cord-002530-ao7kenbx 239 36 manufacturer manufacturer NN cord-002530-ao7kenbx 239 37 's 's POS cord-002530-ao7kenbx 239 38 protocol protocol NN cord-002530-ao7kenbx 239 39 . . . cord-002530-ao7kenbx 240 1 Transfected Transfected NNP cord-002530-ao7kenbx 240 2 NHDFs NHDFs NNPS cord-002530-ao7kenbx 240 3 were be VBD cord-002530-ao7kenbx 240 4 incubated incubate VBN cord-002530-ao7kenbx 240 5 for for IN cord-002530-ao7kenbx 240 6 48 48 CD cord-002530-ao7kenbx 240 7 hours hour NNS cord-002530-ao7kenbx 240 8 and and CC cord-002530-ao7kenbx 240 9 then then RB cord-002530-ao7kenbx 240 10 infected infect VBN cord-002530-ao7kenbx 240 11 with with IN cord-002530-ao7kenbx 240 12 GFP GFP NNP cord-002530-ao7kenbx 240 13 expressing express VBG cord-002530-ao7kenbx 240 14 TB40E tb40e NN cord-002530-ao7kenbx 240 15 virus virus NN cord-002530-ao7kenbx 240 16 at at IN cord-002530-ao7kenbx 240 17 an an DT cord-002530-ao7kenbx 240 18 MOI MOI NNP cord-002530-ao7kenbx 240 19 of of IN cord-002530-ao7kenbx 240 20 three three CD cord-002530-ao7kenbx 240 21 . . . cord-002530-ao7kenbx 241 1 GFP GFP NNP cord-002530-ao7kenbx 241 2 intensity intensity NN cord-002530-ao7kenbx 241 3 was be VBD cord-002530-ao7kenbx 241 4 monitored monitor VBN cord-002530-ao7kenbx 241 5 every every DT cord-002530-ao7kenbx 241 6 24 24 CD cord-002530-ao7kenbx 241 7 hours hour NNS cord-002530-ao7kenbx 241 8 with with IN cord-002530-ao7kenbx 241 9 Synergy Synergy NNP cord-002530-ao7kenbx 241 10 HT HT NNP cord-002530-ao7kenbx 241 11 microplate microplate NN cord-002530-ao7kenbx 241 12 reader reader NN cord-002530-ao7kenbx 241 13 ( ( -LRB- cord-002530-ao7kenbx 241 14 Biotek Biotek NNP cord-002530-ao7kenbx 241 15 ) ) -RRB- cord-002530-ao7kenbx 241 16 . . . cord-002530-ao7kenbx 242 1 The the DT cord-002530-ao7kenbx 242 2 entire entire JJ cord-002530-ao7kenbx 242 3 screen screen NN cord-002530-ao7kenbx 242 4 was be VBD cord-002530-ao7kenbx 242 5 performed perform VBN cord-002530-ao7kenbx 242 6 in in IN cord-002530-ao7kenbx 242 7 duplicate duplicate NN cord-002530-ao7kenbx 242 8 and and CC cord-002530-ao7kenbx 242 9 repeated repeat VBD cord-002530-ao7kenbx 242 10 three three CD cord-002530-ao7kenbx 242 11 times time NNS cord-002530-ao7kenbx 242 12 . . . cord-002530-ao7kenbx 243 1 VCP VCP NNP cord-002530-ao7kenbx 243 2 gene gene NN cord-002530-ao7kenbx 243 3 identified identify VBN cord-002530-ao7kenbx 243 4 from from IN cord-002530-ao7kenbx 243 5 the the DT cord-002530-ao7kenbx 243 6 primary primary JJ cord-002530-ao7kenbx 243 7 screen screen NN cord-002530-ao7kenbx 243 8 was be VBD cord-002530-ao7kenbx 243 9 subsequently subsequently RB cord-002530-ao7kenbx 243 10 silenced silence VBN cord-002530-ao7kenbx 243 11 with with IN cord-002530-ao7kenbx 243 12 four four CD cord-002530-ao7kenbx 243 13 individual individual JJ cord-002530-ao7kenbx 243 14 siRNAs siRNAs NNP cord-002530-ao7kenbx 243 15 to to TO cord-002530-ao7kenbx 243 16 eliminate eliminate VB cord-002530-ao7kenbx 243 17 the the DT cord-002530-ao7kenbx 243 18 possibility possibility NN cord-002530-ao7kenbx 243 19 that that IN cord-002530-ao7kenbx 243 20 the the DT cord-002530-ao7kenbx 243 21 phenotype phenotype NN cord-002530-ao7kenbx 243 22 was be VBD cord-002530-ao7kenbx 243 23 associated associate VBN cord-002530-ao7kenbx 243 24 with with IN cord-002530-ao7kenbx 243 25 off off JJ cord-002530-ao7kenbx 243 26 target target NN cord-002530-ao7kenbx 243 27 effects effect NNS cord-002530-ao7kenbx 243 28 . . . cord-002530-ao7kenbx 244 1 Cells cell NNS cord-002530-ao7kenbx 244 2 were be VBD cord-002530-ao7kenbx 244 3 lysed lyse VBN cord-002530-ao7kenbx 244 4 with with IN cord-002530-ao7kenbx 244 5 RIPA RIPA NNP cord-002530-ao7kenbx 244 6 buffer buffer NN cord-002530-ao7kenbx 244 7 ( ( -LRB- cord-002530-ao7kenbx 244 8 0.1 0.1 CD cord-002530-ao7kenbx 244 9 % % NN cord-002530-ao7kenbx 244 10 SDS SDS NNP cord-002530-ao7kenbx 244 11 , , , cord-002530-ao7kenbx 244 12 1 1 CD cord-002530-ao7kenbx 244 13 % % NN cord-002530-ao7kenbx 244 14 Triton Triton NNP cord-002530-ao7kenbx 244 15 X-100 x-100 NN cord-002530-ao7kenbx 244 16 , , , cord-002530-ao7kenbx 244 17 1 1 CD cord-002530-ao7kenbx 244 18 % % NN cord-002530-ao7kenbx 244 19 deoxycholate deoxycholate NN cord-002530-ao7kenbx 244 20 , , , cord-002530-ao7kenbx 245 1 5 5 LS cord-002530-ao7kenbx 245 2 mM mm CD cord-002530-ao7kenbx 245 3 EDTA EDTA NNP cord-002530-ao7kenbx 245 4 , , , cord-002530-ao7kenbx 245 5 150 150 CD cord-002530-ao7kenbx 245 6 mM mm CD cord-002530-ao7kenbx 245 7 NaCl nacl NN cord-002530-ao7kenbx 245 8 , , , cord-002530-ao7kenbx 245 9 and and CC cord-002530-ao7kenbx 245 10 10 10 CD cord-002530-ao7kenbx 245 11 mM mm CD cord-002530-ao7kenbx 245 12 Tris Tris NNP cord-002530-ao7kenbx 245 13 at at IN cord-002530-ao7kenbx 245 14 pH pH NNP cord-002530-ao7kenbx 245 15 7.2 7.2 CD cord-002530-ao7kenbx 245 16 ) ) -RRB- cord-002530-ao7kenbx 245 17 containing contain VBG cord-002530-ao7kenbx 245 18 protease protease NN cord-002530-ao7kenbx 245 19 inhibitor inhibitor NN cord-002530-ao7kenbx 245 20 cocktail cocktail NN cord-002530-ao7kenbx 245 21 ( ( -LRB- cord-002530-ao7kenbx 245 22 Roche Roche NNP cord-002530-ao7kenbx 245 23 ) ) -RRB- cord-002530-ao7kenbx 245 24 . . . cord-002530-ao7kenbx 246 1 Ten ten CD cord-002530-ao7kenbx 246 2 micrograms microgram NNS cord-002530-ao7kenbx 246 3 of of IN cord-002530-ao7kenbx 246 4 the the DT cord-002530-ao7kenbx 246 5 total total JJ cord-002530-ao7kenbx 246 6 lysate lysate NN cord-002530-ao7kenbx 246 7 was be VBD cord-002530-ao7kenbx 246 8 separated separate VBN cord-002530-ao7kenbx 246 9 in in IN cord-002530-ao7kenbx 246 10 10 10 CD cord-002530-ao7kenbx 246 11 % % NN cord-002530-ao7kenbx 246 12 SDS sds NN cord-002530-ao7kenbx 246 13 - - HYPH cord-002530-ao7kenbx 246 14 polyacrylamide polyacrylamide NN cord-002530-ao7kenbx 246 15 gels gel NNS cord-002530-ao7kenbx 246 16 and and CC cord-002530-ao7kenbx 246 17 transferred transfer VBN cord-002530-ao7kenbx 246 18 to to IN cord-002530-ao7kenbx 246 19 PVDF pvdf NN cord-002530-ao7kenbx 246 20 membranes membrane NNS cord-002530-ao7kenbx 246 21 ( ( -LRB- cord-002530-ao7kenbx 246 22 Millipore Millipore NNP cord-002530-ao7kenbx 246 23 ) ) -RRB- cord-002530-ao7kenbx 246 24 . . . cord-002530-ao7kenbx 247 1 Primary primary JJ cord-002530-ao7kenbx 247 2 antibodies antibody NNS cord-002530-ao7kenbx 247 3 used use VBN cord-002530-ao7kenbx 247 4 in in IN cord-002530-ao7kenbx 247 5 this this DT cord-002530-ao7kenbx 247 6 paper paper NN cord-002530-ao7kenbx 247 7 are be VBP cord-002530-ao7kenbx 247 8 mouse mouse NN cord-002530-ao7kenbx 247 9 anti anti JJ cord-002530-ao7kenbx 247 10 - - JJ cord-002530-ao7kenbx 247 11 CMV cmv JJ cord-002530-ao7kenbx 247 12 IE1/2 ie1/2 NN cord-002530-ao7kenbx 247 13 monoclonal monoclonal JJ cord-002530-ao7kenbx 247 14 antibody antibody NN cord-002530-ao7kenbx 247 15 ( ( -LRB- cord-002530-ao7kenbx 247 16 MAB8131 MAB8131 NNP cord-002530-ao7kenbx 247 17 , , , cord-002530-ao7kenbx 247 18 Millipore Millipore NNP cord-002530-ao7kenbx 247 19 ) ) -RRB- cord-002530-ao7kenbx 247 20 , , , cord-002530-ao7kenbx 247 21 mouse mouse NN cord-002530-ao7kenbx 247 22 anti anti JJ cord-002530-ao7kenbx 247 23 - - JJ cord-002530-ao7kenbx 247 24 CMV CMV NNP cord-002530-ao7kenbx 247 25 pp52 pp52 NN cord-002530-ao7kenbx 247 26 monoclonal monoclonal JJ cord-002530-ao7kenbx 247 27 antibody antibody NN cord-002530-ao7kenbx 247 28 ( ( -LRB- cord-002530-ao7kenbx 247 29 CH16 CH16 NNP cord-002530-ao7kenbx 247 30 , , , cord-002530-ao7kenbx 247 31 Santa Santa NNP cord-002530-ao7kenbx 247 32 Cruz Cruz NNP cord-002530-ao7kenbx 247 33 Biotechnology Biotechnology NNP cord-002530-ao7kenbx 247 34 ) ) -RRB- cord-002530-ao7kenbx 247 35 , , , cord-002530-ao7kenbx 247 36 mouse mouse NN cord-002530-ao7kenbx 247 37 anti anti JJ cord-002530-ao7kenbx 247 38 - - JJ cord-002530-ao7kenbx 247 39 CMV CMV NNP cord-002530-ao7kenbx 247 40 pp28 pp28 NN cord-002530-ao7kenbx 247 41 monoclonal monoclonal JJ cord-002530-ao7kenbx 247 42 antibody antibody NN cord-002530-ao7kenbx 247 43 ( ( -LRB- cord-002530-ao7kenbx 247 44 CH19 CH19 NNP cord-002530-ao7kenbx 247 45 , , , cord-002530-ao7kenbx 247 46 Santa Santa NNP cord-002530-ao7kenbx 247 47 Cruz Cruz NNP cord-002530-ao7kenbx 247 48 Biotechnology Biotechnology NNP cord-002530-ao7kenbx 247 49 ) ) -RRB- cord-002530-ao7kenbx 247 50 , , , cord-002530-ao7kenbx 247 51 rabbit rabbit NN cord-002530-ao7kenbx 247 52 anti anti JJ cord-002530-ao7kenbx 247 53 - - JJ cord-002530-ao7kenbx 247 54 VCP vcp JJ cord-002530-ao7kenbx 247 55 polyclonal polyclonal JJ cord-002530-ao7kenbx 247 56 antibody antibody NN cord-002530-ao7kenbx 247 57 ( ( -LRB- cord-002530-ao7kenbx 247 58 H-120 h-120 RB cord-002530-ao7kenbx 247 59 , , , cord-002530-ao7kenbx 247 60 Santa Santa NNP cord-002530-ao7kenbx 247 61 Cruz Cruz NNP cord-002530-ao7kenbx 247 62 Biotechnology Biotechnology NNP cord-002530-ao7kenbx 247 63 ) ) -RRB- cord-002530-ao7kenbx 247 64 , , , cord-002530-ao7kenbx 247 65 and and CC cord-002530-ao7kenbx 247 66 mouse mouse NN cord-002530-ao7kenbx 247 67 anti anti NNP cord-002530-ao7kenbx 247 68 - - JJ cord-002530-ao7kenbx 247 69 β β JJ cord-002530-ao7kenbx 247 70 - - HYPH cord-002530-ao7kenbx 247 71 Actin Actin NNP cord-002530-ao7kenbx 247 72 monoclonal monoclonal JJ cord-002530-ao7kenbx 247 73 antibody antibody NN cord-002530-ao7kenbx 247 74 ( ( -LRB- cord-002530-ao7kenbx 247 75 Abcam Abcam NNP cord-002530-ao7kenbx 247 76 ) ) -RRB- cord-002530-ao7kenbx 247 77 . . . cord-002530-ao7kenbx 248 1 Blots blot NNS cord-002530-ao7kenbx 248 2 were be VBD cord-002530-ao7kenbx 248 3 probed probe VBN cord-002530-ao7kenbx 248 4 with with IN cord-002530-ao7kenbx 248 5 primary primary JJ cord-002530-ao7kenbx 248 6 antibody antibody NN cord-002530-ao7kenbx 248 7 ( ( -LRB- cord-002530-ao7kenbx 248 8 1:500 1:500 CD cord-002530-ao7kenbx 248 9 - - SYM cord-002530-ao7kenbx 248 10 1:2000 1:2000 CD cord-002530-ao7kenbx 248 11 ) ) -RRB- cord-002530-ao7kenbx 248 12 diluted dilute VBN cord-002530-ao7kenbx 248 13 in in IN cord-002530-ao7kenbx 248 14 5 5 CD cord-002530-ao7kenbx 248 15 % % NN cord-002530-ao7kenbx 248 16 dehydrated dehydrated JJ cord-002530-ao7kenbx 248 17 milk milk NN cord-002530-ao7kenbx 248 18 in in IN cord-002530-ao7kenbx 248 19 Tris Tris NNP cord-002530-ao7kenbx 248 20 Buffered Buffered NNP cord-002530-ao7kenbx 248 21 Saline Saline NNP cord-002530-ao7kenbx 248 22 ( ( -LRB- cord-002530-ao7kenbx 248 23 TBS TBS NNP cord-002530-ao7kenbx 248 24 ) ) -RRB- cord-002530-ao7kenbx 248 25 and and CC cord-002530-ao7kenbx 248 26 subsequently subsequently RB cord-002530-ao7kenbx 248 27 the the DT cord-002530-ao7kenbx 248 28 HRP HRP NNP cord-002530-ao7kenbx 248 29 - - HYPH cord-002530-ao7kenbx 248 30 conjugated conjugate VBN cord-002530-ao7kenbx 248 31 secondary secondary JJ cord-002530-ao7kenbx 248 32 antibodies antibody NNS cord-002530-ao7kenbx 248 33 ( ( -LRB- cord-002530-ao7kenbx 248 34 Pierce Pierce NNP cord-002530-ao7kenbx 248 35 ) ) -RRB- cord-002530-ao7kenbx 248 36 at at IN cord-002530-ao7kenbx 248 37 1:5000 1:5000 NNS cord-002530-ao7kenbx 248 38 . . . cord-002530-ao7kenbx 249 1 Blots blot NNS cord-002530-ao7kenbx 249 2 were be VBD cord-002530-ao7kenbx 249 3 washed wash VBN cord-002530-ao7kenbx 249 4 in in IN cord-002530-ao7kenbx 249 5 TBS TBS NNP cord-002530-ao7kenbx 249 6 three three CD cord-002530-ao7kenbx 249 7 times time NNS cord-002530-ao7kenbx 249 8 , , , cord-002530-ao7kenbx 249 9 incubated incubate VBN cord-002530-ao7kenbx 249 10 with with IN cord-002530-ao7kenbx 249 11 chemiluminescent chemiluminescent NN cord-002530-ao7kenbx 249 12 substrate substrate NN cord-002530-ao7kenbx 249 13 ( ( -LRB- cord-002530-ao7kenbx 249 14 SuperSignal SuperSignal NNP cord-002530-ao7kenbx 249 15 West West NNP cord-002530-ao7kenbx 249 16 Pico Pico NNP cord-002530-ao7kenbx 249 17 ; ; : cord-002530-ao7kenbx 249 18 Thermo Thermo NNP cord-002530-ao7kenbx 249 19 Scientific Scientific NNP cord-002530-ao7kenbx 249 20 ) ) -RRB- cord-002530-ao7kenbx 249 21 according accord VBG cord-002530-ao7kenbx 249 22 to to IN cord-002530-ao7kenbx 249 23 the the DT cord-002530-ao7kenbx 249 24 manufacturer manufacturer NN cord-002530-ao7kenbx 249 25 's 's POS cord-002530-ao7kenbx 249 26 protocol protocol NN cord-002530-ao7kenbx 249 27 , , , cord-002530-ao7kenbx 249 28 and and CC cord-002530-ao7kenbx 249 29 exposed expose VBN cord-002530-ao7kenbx 249 30 in in IN cord-002530-ao7kenbx 249 31 G g NN cord-002530-ao7kenbx 249 32 : : : cord-002530-ao7kenbx 249 33 Box Box NNP cord-002530-ao7kenbx 249 34 ( ( -LRB- cord-002530-ao7kenbx 249 35 Syngene Syngene NNP cord-002530-ao7kenbx 249 36 ) ) -RRB- cord-002530-ao7kenbx 249 37 for for IN cord-002530-ao7kenbx 249 38 visualization visualization NN cord-002530-ao7kenbx 249 39 of of IN cord-002530-ao7kenbx 249 40 bands band NNS cord-002530-ao7kenbx 249 41 . . . cord-002530-ao7kenbx 250 1 Total Total NNP cord-002530-ao7kenbx 250 2 RNA RNA NNP cord-002530-ao7kenbx 250 3 was be VBD cord-002530-ao7kenbx 250 4 isolated isolate VBN cord-002530-ao7kenbx 250 5 by by IN cord-002530-ao7kenbx 250 6 using use VBG cord-002530-ao7kenbx 250 7 Trizol Trizol NNP cord-002530-ao7kenbx 250 8 solution solution NN cord-002530-ao7kenbx 250 9 according accord VBG cord-002530-ao7kenbx 250 10 to to IN cord-002530-ao7kenbx 250 11 the the DT cord-002530-ao7kenbx 250 12 manufacturer manufacturer NN cord-002530-ao7kenbx 250 13 's 's POS cord-002530-ao7kenbx 250 14 protocol protocol NN cord-002530-ao7kenbx 250 15 . . . cord-002530-ao7kenbx 251 1 Northern northern JJ cord-002530-ao7kenbx 251 2 blot blot NN cord-002530-ao7kenbx 251 3 analysis analysis NN cord-002530-ao7kenbx 251 4 for for IN cord-002530-ao7kenbx 251 5 IE1 ie1 NN cord-002530-ao7kenbx 251 6 and and CC cord-002530-ao7kenbx 251 7 IE2 IE2 NNP cord-002530-ao7kenbx 252 1 mRNAs mRNAs NNP cord-002530-ao7kenbx 252 2 was be VBD cord-002530-ao7kenbx 252 3 conducted conduct VBN cord-002530-ao7kenbx 252 4 using use VBG cord-002530-ao7kenbx 252 5 total total JJ cord-002530-ao7kenbx 252 6 RNA RNA NNP cord-002530-ao7kenbx 252 7 that that WDT cord-002530-ao7kenbx 252 8 was be VBD cord-002530-ao7kenbx 252 9 separated separate VBN cord-002530-ao7kenbx 252 10 on on IN cord-002530-ao7kenbx 252 11 a a DT cord-002530-ao7kenbx 252 12 1.2 1.2 CD cord-002530-ao7kenbx 252 13 % % NN cord-002530-ao7kenbx 252 14 agarose agarose JJ cord-002530-ao7kenbx 252 15 formaldehyde formaldehyde NN cord-002530-ao7kenbx 252 16 gel gel NN cord-002530-ao7kenbx 252 17 and and CC cord-002530-ao7kenbx 252 18 then then RB cord-002530-ao7kenbx 252 19 transferred transfer VBD cord-002530-ao7kenbx 252 20 using use VBG cord-002530-ao7kenbx 252 21 Whatman Whatman NNP cord-002530-ao7kenbx 252 22 TurboBlotter TurboBlotter NNP cord-002530-ao7kenbx 252 23 Rapid Rapid NNP cord-002530-ao7kenbx 252 24 Downward Downward NNP cord-002530-ao7kenbx 252 25 Transfer Transfer NNP cord-002530-ao7kenbx 252 26 Systems Systems NNPS cord-002530-ao7kenbx 252 27 . . . cord-002530-ao7kenbx 253 1 IE1 ie1 NN cord-002530-ao7kenbx 253 2 and and CC cord-002530-ao7kenbx 253 3 IE2 ie2 JJ cord-002530-ao7kenbx 253 4 probes probe NNS cord-002530-ao7kenbx 253 5 were be VBD cord-002530-ao7kenbx 253 6 generated generate VBN cord-002530-ao7kenbx 253 7 by by IN cord-002530-ao7kenbx 253 8 PCR PCR NNP cord-002530-ao7kenbx 253 9 using use VBG cord-002530-ao7kenbx 253 10 cDNA cdna NN cord-002530-ao7kenbx 253 11 from from IN cord-002530-ao7kenbx 253 12 TB40E tb40e NN cord-002530-ao7kenbx 253 13 infected infect VBN cord-002530-ao7kenbx 253 14 NHDFs NHDFs NNPS cord-002530-ao7kenbx 253 15 ( ( -LRB- cord-002530-ao7kenbx 253 16 as as IN cord-002530-ao7kenbx 253 17 template template NN cord-002530-ao7kenbx 253 18 ) ) -RRB- cord-002530-ao7kenbx 253 19 and and CC cord-002530-ao7kenbx 253 20 labelled label VBN cord-002530-ao7kenbx 253 21 with with IN cord-002530-ao7kenbx 253 22 Amersham Amersham NNP cord-002530-ao7kenbx 253 23 Rediprime Rediprime NNP cord-002530-ao7kenbx 253 24 II II NNP cord-002530-ao7kenbx 253 25 DNA dna NN cord-002530-ao7kenbx 253 26 labelling labelling NN cord-002530-ao7kenbx 253 27 system system NN cord-002530-ao7kenbx 253 28 ( ( -LRB- cord-002530-ao7kenbx 253 29 GE GE NNP cord-002530-ao7kenbx 253 30 Healthcare Healthcare NNP cord-002530-ao7kenbx 253 31 ) ) -RRB- cord-002530-ao7kenbx 253 32 with with IN cord-002530-ao7kenbx 253 33 the the DT cord-002530-ao7kenbx 253 34 following follow VBG cord-002530-ao7kenbx 253 35 primers primer NNS cord-002530-ao7kenbx 253 36 ( ( -LRB- cord-002530-ao7kenbx 253 37 IE1 ie1 NN cord-002530-ao7kenbx 253 38 : : : cord-002530-ao7kenbx 253 39 TCAAACAGATTAAGGT TCAAACAGATTAAGGT NNP cord-002530-ao7kenbx 253 40 TCGAGTGG TCGAGTGG NNP cord-002530-ao7kenbx 253 41 , , , cord-002530-ao7kenbx 253 42 and and CC cord-002530-ao7kenbx 253 43 ATCCACATCTCCCGCTTATCCTCG ATCCACATCTCCCGCTTATCCTCG NNP cord-002530-ao7kenbx 253 44 ; ; : cord-002530-ao7kenbx 253 45 IE2 ie2 NN cord-002530-ao7kenbx 253 46 : : : cord-002530-ao7kenbx 253 47 TCATGGTGCGCATCTTC TCATGGTGCGCATCTTC NNP cord-002530-ao7kenbx 253 48 TCCACC TCCACC NNP cord-002530-ao7kenbx 253 49 , , , cord-002530-ao7kenbx 253 50 and and CC cord-002530-ao7kenbx 253 51 TTACTGAGACTTGTTCCTCAGGTCC TTACTGAGACTTGTTCCTCAGGTCC NNP cord-002530-ao7kenbx 253 52 ) ) -RRB- cord-002530-ao7kenbx 253 53 . . . cord-002530-ao7kenbx 254 1 After after IN cord-002530-ao7kenbx 254 2 hybridization hybridization NN cord-002530-ao7kenbx 254 3 and and CC cord-002530-ao7kenbx 254 4 wash wash NN cord-002530-ao7kenbx 254 5 , , , cord-002530-ao7kenbx 254 6 the the DT cord-002530-ao7kenbx 254 7 membranes membrane NNS cord-002530-ao7kenbx 254 8 were be VBD cord-002530-ao7kenbx 254 9 exposed expose VBN cord-002530-ao7kenbx 254 10 to to IN cord-002530-ao7kenbx 254 11 autoradiography autoradiography NNP cord-002530-ao7kenbx 254 12 film film NN cord-002530-ao7kenbx 254 13 with with IN cord-002530-ao7kenbx 254 14 an an DT cord-002530-ao7kenbx 254 15 intensifying intensify VBG cord-002530-ao7kenbx 254 16 screen screen NN cord-002530-ao7kenbx 254 17 ( ( -LRB- cord-002530-ao7kenbx 254 18 Biomax Biomax NNP cord-002530-ao7kenbx 254 19 Transcreen Transcreen NNP cord-002530-ao7kenbx 254 20 HE HE NNP cord-002530-ao7kenbx 254 21 , , , cord-002530-ao7kenbx 254 22 Kodak Kodak NNP cord-002530-ao7kenbx 254 23 ) ) -RRB- cord-002530-ao7kenbx 254 24 for for IN cord-002530-ao7kenbx 254 25 visualization visualization NN cord-002530-ao7kenbx 254 26 of of IN cord-002530-ao7kenbx 254 27 bands band NNS cord-002530-ao7kenbx 254 28 . . . cord-002530-ao7kenbx 255 1 Cells cell NNS cord-002530-ao7kenbx 255 2 were be VBD cord-002530-ao7kenbx 255 3 transfected transfecte VBN cord-002530-ao7kenbx 255 4 and and CC cord-002530-ao7kenbx 255 5 infected infect VBN cord-002530-ao7kenbx 255 6 as as IN cord-002530-ao7kenbx 255 7 described describe VBN cord-002530-ao7kenbx 255 8 above above RB cord-002530-ao7kenbx 255 9 . . . cord-002530-ao7kenbx 256 1 Total Total NNP cord-002530-ao7kenbx 256 2 RNA RNA NNP cord-002530-ao7kenbx 256 3 was be VBD cord-002530-ao7kenbx 256 4 harvested harvest VBN cord-002530-ao7kenbx 256 5 using use VBG cord-002530-ao7kenbx 256 6 Trizol Trizol NNP cord-002530-ao7kenbx 256 7 according accord VBG cord-002530-ao7kenbx 256 8 to to IN cord-002530-ao7kenbx 256 9 manufacturers manufacturer NNS cord-002530-ao7kenbx 256 10 guidelines guideline NNS cord-002530-ao7kenbx 256 11 . . . cord-002530-ao7kenbx 257 1 Total Total NNP cord-002530-ao7kenbx 257 2 RNA RNA NNP cord-002530-ao7kenbx 257 3 was be VBD cord-002530-ao7kenbx 257 4 submitted submit VBN cord-002530-ao7kenbx 257 5 to to IN cord-002530-ao7kenbx 257 6 Edinburgh Edinburgh NNP cord-002530-ao7kenbx 257 7 Genomics Genomics NNP cord-002530-ao7kenbx 257 8 for for IN cord-002530-ao7kenbx 257 9 generation generation NN cord-002530-ao7kenbx 257 10 of of IN cord-002530-ao7kenbx 257 11 TruSeq TruSeq NNP cord-002530-ao7kenbx 257 12 stranded strand VBN cord-002530-ao7kenbx 257 13 libraries library NNS cord-002530-ao7kenbx 257 14 and and CC cord-002530-ao7kenbx 257 15 subjected subject VBN cord-002530-ao7kenbx 257 16 to to IN cord-002530-ao7kenbx 257 17 HiSeq HiSeq NNP cord-002530-ao7kenbx 257 18 high high JJ cord-002530-ao7kenbx 257 19 output output NN cord-002530-ao7kenbx 257 20 v4 v4 NNP cord-002530-ao7kenbx 257 21 125PE 125PE NNP cord-002530-ao7kenbx 257 22 sequencing sequencing NN cord-002530-ao7kenbx 257 23 . . . cord-002530-ao7kenbx 258 1 The the DT cord-002530-ao7kenbx 258 2 strand strand NN cord-002530-ao7kenbx 258 3 - - HYPH cord-002530-ao7kenbx 258 4 specific specific JJ cord-002530-ao7kenbx 258 5 RNA RNA NNP cord-002530-ao7kenbx 258 6 - - HYPH cord-002530-ao7kenbx 258 7 seq seq NN cord-002530-ao7kenbx 258 8 reads read NNS cord-002530-ao7kenbx 258 9 were be VBD cord-002530-ao7kenbx 258 10 mapped map VBN cord-002530-ao7kenbx 258 11 to to IN cord-002530-ao7kenbx 258 12 a a DT cord-002530-ao7kenbx 258 13 combined combine VBN cord-002530-ao7kenbx 258 14 version version NN cord-002530-ao7kenbx 258 15 of of IN cord-002530-ao7kenbx 258 16 the the DT cord-002530-ao7kenbx 258 17 human human NN cord-002530-ao7kenbx 258 18 ( ( -LRB- cord-002530-ao7kenbx 258 19 hg38 hg38 NNP cord-002530-ao7kenbx 258 20 ) ) -RRB- cord-002530-ao7kenbx 258 21 and and CC cord-002530-ao7kenbx 258 22 human human JJ cord-002530-ao7kenbx 258 23 herpesvirus herpesvirus NNP cord-002530-ao7kenbx 258 24 5 5 CD cord-002530-ao7kenbx 258 25 ( ( -LRB- cord-002530-ao7kenbx 258 26 KF297339 kf297339 NN cord-002530-ao7kenbx 258 27 ) ) -RRB- cord-002530-ao7kenbx 258 28 genomes genome NNS cord-002530-ao7kenbx 258 29 using use VBG cord-002530-ao7kenbx 258 30 the the DT cord-002530-ao7kenbx 258 31 HISAT HISAT NNP cord-002530-ao7kenbx 258 32 spliced splice VBN cord-002530-ao7kenbx 258 33 read read NN cord-002530-ao7kenbx 258 34 mapper mapper NN cord-002530-ao7kenbx 258 35 ( ( -LRB- cord-002530-ao7kenbx 258 36 PMID:25751142 PMID:25751142 NNP cord-002530-ao7kenbx 258 37 ) ) -RRB- cord-002530-ao7kenbx 258 38 . . . cord-002530-ao7kenbx 259 1 Only only RB cord-002530-ao7kenbx 259 2 valid valid JJ cord-002530-ao7kenbx 259 3 read read NN cord-002530-ao7kenbx 259 4 pairs pair NNS cord-002530-ao7kenbx 259 5 mapped map VBN cord-002530-ao7kenbx 259 6 together together RB cord-002530-ao7kenbx 259 7 in in IN cord-002530-ao7kenbx 259 8 the the DT cord-002530-ao7kenbx 259 9 correct correct JJ cord-002530-ao7kenbx 259 10 orientation orientation NN cord-002530-ao7kenbx 259 11 were be VBD cord-002530-ao7kenbx 259 12 retained retain VBN cord-002530-ao7kenbx 259 13 ( ( -LRB- cord-002530-ao7kenbx 259 14 i.e. i.e. FW cord-002530-ao7kenbx 259 15 carrying carry VBG cord-002530-ao7kenbx 259 16 a a DT cord-002530-ao7kenbx 259 17 SAM SAM NNP cord-002530-ao7kenbx 259 18 flag flag NN cord-002530-ao7kenbx 259 19 of of IN cord-002530-ao7kenbx 259 20 one one CD cord-002530-ao7kenbx 259 21 of of IN cord-002530-ao7kenbx 259 22 83 83 CD cord-002530-ao7kenbx 259 23 , , , cord-002530-ao7kenbx 259 24 99 99 CD cord-002530-ao7kenbx 259 25 , , , cord-002530-ao7kenbx 259 26 147 147 CD cord-002530-ao7kenbx 259 27 or or CC cord-002530-ao7kenbx 259 28 163 163 CD cord-002530-ao7kenbx 259 29 ) ) -RRB- cord-002530-ao7kenbx 259 30 and and CC cord-002530-ao7kenbx 259 31 a a DT cord-002530-ao7kenbx 259 32 custom custom NN cord-002530-ao7kenbx 259 33 Perl Perl NNP cord-002530-ao7kenbx 259 34 script script NN cord-002530-ao7kenbx 259 35 was be VBD cord-002530-ao7kenbx 259 36 used use VBN cord-002530-ao7kenbx 259 37 to to TO cord-002530-ao7kenbx 259 38 count count VB cord-002530-ao7kenbx 259 39 the the DT cord-002530-ao7kenbx 259 40 number number NN cord-002530-ao7kenbx 259 41 of of IN cord-002530-ao7kenbx 259 42 these these DT cord-002530-ao7kenbx 259 43 reads read VBZ cord-002530-ao7kenbx 259 44 mapping mapping NN cord-002530-ao7kenbx 259 45 to to IN cord-002530-ao7kenbx 259 46 each each DT cord-002530-ao7kenbx 259 47 exon exon NN cord-002530-ao7kenbx 259 48 as as RB cord-002530-ao7kenbx 259 49 well well RB cord-002530-ao7kenbx 259 50 as as IN cord-002530-ao7kenbx 259 51 the the DT cord-002530-ao7kenbx 259 52 number number NN cord-002530-ao7kenbx 259 53 of of IN cord-002530-ao7kenbx 259 54 read read NN cord-002530-ao7kenbx 259 55 pairs pair NNS cord-002530-ao7kenbx 259 56 spanning span VBG cord-002530-ao7kenbx 259 57 different different JJ cord-002530-ao7kenbx 259 58 combinations combination NNS cord-002530-ao7kenbx 259 59 of of IN cord-002530-ao7kenbx 259 60 exons exon NNS cord-002530-ao7kenbx 259 61 . . . cord-002530-ao7kenbx 260 1 Drug drug NN cord-002530-ao7kenbx 260 2 inhibitor inhibitor NN cord-002530-ao7kenbx 260 3 studies study NNS cord-002530-ao7kenbx 260 4 and and CC cord-002530-ao7kenbx 260 5 cytotoxicity cytotoxicity NN cord-002530-ao7kenbx 260 6 assay assay NN cord-002530-ao7kenbx 261 1 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 262 1 ( ( -LRB- cord-002530-ao7kenbx 262 2 Xcess Xcess NNP cord-002530-ao7kenbx 262 3 Biosciences Biosciences NNPS cord-002530-ao7kenbx 262 4 ) ) -RRB- cord-002530-ao7kenbx 262 5 and and CC cord-002530-ao7kenbx 262 6 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 262 7 ( ( -LRB- cord-002530-ao7kenbx 262 8 Cambridge Cambridge NNP cord-002530-ao7kenbx 262 9 Bioscience Bioscience NNP cord-002530-ao7kenbx 262 10 ) ) -RRB- cord-002530-ao7kenbx 262 11 were be VBD cord-002530-ao7kenbx 262 12 dissolved dissolve VBN cord-002530-ao7kenbx 262 13 in in IN cord-002530-ao7kenbx 262 14 DMSO DMSO NNP cord-002530-ao7kenbx 262 15 and and CC cord-002530-ao7kenbx 262 16 added add VBD cord-002530-ao7kenbx 262 17 to to IN cord-002530-ao7kenbx 262 18 the the DT cord-002530-ao7kenbx 262 19 cell cell NN cord-002530-ao7kenbx 262 20 culture culture NN cord-002530-ao7kenbx 262 21 at at IN cord-002530-ao7kenbx 262 22 a a DT cord-002530-ao7kenbx 262 23 working work VBG cord-002530-ao7kenbx 262 24 concentration concentration NN cord-002530-ao7kenbx 262 25 24 24 CD cord-002530-ao7kenbx 262 26 hours hour NNS cord-002530-ao7kenbx 262 27 before before IN cord-002530-ao7kenbx 262 28 HCMV HCMV NNP cord-002530-ao7kenbx 262 29 infection infection NN cord-002530-ao7kenbx 262 30 . . . cord-002530-ao7kenbx 263 1 Viability viability NN cord-002530-ao7kenbx 263 2 for for IN cord-002530-ao7kenbx 263 3 NMS-873 nms-873 RB cord-002530-ao7kenbx 263 4 treated treat VBN cord-002530-ao7kenbx 263 5 cells cell NNS cord-002530-ao7kenbx 263 6 was be VBD cord-002530-ao7kenbx 263 7 assessed assess VBN cord-002530-ao7kenbx 263 8 using use VBG cord-002530-ao7kenbx 263 9 the the DT cord-002530-ao7kenbx 263 10 CellTiter CellTiter NNP cord-002530-ao7kenbx 263 11 - - HYPH cord-002530-ao7kenbx 263 12 Glo Glo NNP cord-002530-ao7kenbx 263 13 luminescent luminescent JJ cord-002530-ao7kenbx 263 14 cell cell NN cord-002530-ao7kenbx 263 15 viability viability NN cord-002530-ao7kenbx 263 16 assay assay NN cord-002530-ao7kenbx 263 17 kit kit NN cord-002530-ao7kenbx 263 18 ( ( -LRB- cord-002530-ao7kenbx 263 19 Promega Promega NNP cord-002530-ao7kenbx 263 20 ) ) -RRB- cord-002530-ao7kenbx 263 21 and and CC cord-002530-ao7kenbx 263 22 CellTiter CellTiter NNP cord-002530-ao7kenbx 263 23 - - HYPH cord-002530-ao7kenbx 263 24 Blue Blue NNP cord-002530-ao7kenbx 263 25 ( ( -LRB- cord-002530-ao7kenbx 263 26 Promega Promega NNP cord-002530-ao7kenbx 263 27 ) ) -RRB- cord-002530-ao7kenbx 263 28 120 120 CD cord-002530-ao7kenbx 263 29 hours hour NNS cord-002530-ao7kenbx 263 30 after after IN cord-002530-ao7kenbx 263 31 NMS-873 NMS-873 NNP cord-002530-ao7kenbx 263 32 addition addition NN cord-002530-ao7kenbx 263 33 . . . cord-002530-ao7kenbx 264 1 MG132 MG132 NNP cord-002530-ao7kenbx 265 1 ( ( -LRB- cord-002530-ao7kenbx 265 2 Cambridge Cambridge NNP cord-002530-ao7kenbx 265 3 Bioscience Bioscience NNP cord-002530-ao7kenbx 265 4 ) ) -RRB- cord-002530-ao7kenbx 265 5 , , . cord-002530-ao7kenbx 266 1 Pepstatin Pepstatin NNP cord-002530-ao7kenbx 266 2 A A NNP cord-002530-ao7kenbx 266 3 ( ( -LRB- cord-002530-ao7kenbx 266 4 Sigma Sigma NNP cord-002530-ao7kenbx 266 5 ) ) -RRB- cord-002530-ao7kenbx 266 6 , , , cord-002530-ao7kenbx 266 7 and and CC cord-002530-ao7kenbx 266 8 E64 E64 NNP cord-002530-ao7kenbx 266 9 ( ( -LRB- cord-002530-ao7kenbx 266 10 Sigma Sigma NNP cord-002530-ao7kenbx 266 11 ) ) -RRB- cord-002530-ao7kenbx 266 12 were be VBD cord-002530-ao7kenbx 266 13 dissolved dissolve VBN cord-002530-ao7kenbx 266 14 in in IN cord-002530-ao7kenbx 266 15 DMSO DMSO NNP cord-002530-ao7kenbx 266 16 and and CC cord-002530-ao7kenbx 266 17 added add VBD cord-002530-ao7kenbx 266 18 to to IN cord-002530-ao7kenbx 266 19 the the DT cord-002530-ao7kenbx 266 20 cell cell NN cord-002530-ao7kenbx 266 21 culture culture NN cord-002530-ao7kenbx 266 22 24 24 CD cord-002530-ao7kenbx 266 23 hours hour NNS cord-002530-ao7kenbx 266 24 after after IN cord-002530-ao7kenbx 266 25 HCMV HCMV NNP cord-002530-ao7kenbx 266 26 infection infection NN cord-002530-ao7kenbx 266 27 . . . cord-002530-ao7kenbx 267 1 100 100 CD cord-002530-ao7kenbx 267 2 μg μg NNP cord-002530-ao7kenbx 267 3 / / SYM cord-002530-ao7kenbx 267 4 ml ml NN cord-002530-ao7kenbx 267 5 cycloheximide cycloheximide NN cord-002530-ao7kenbx 267 6 ( ( -LRB- cord-002530-ao7kenbx 267 7 in in IN cord-002530-ao7kenbx 267 8 DMSO DMSO NNP cord-002530-ao7kenbx 267 9 , , , cord-002530-ao7kenbx 267 10 Sigma Sigma NNP cord-002530-ao7kenbx 267 11 ) ) -RRB- cord-002530-ao7kenbx 267 12 was be VBD cord-002530-ao7kenbx 267 13 added add VBN cord-002530-ao7kenbx 267 14 to to IN cord-002530-ao7kenbx 267 15 the the DT cord-002530-ao7kenbx 267 16 cell cell NN cord-002530-ao7kenbx 267 17 culture culture NN cord-002530-ao7kenbx 267 18 30 30 CD cord-002530-ao7kenbx 267 19 minutes minute NNS cord-002530-ao7kenbx 267 20 before before IN cord-002530-ao7kenbx 267 21 HCMV HCMV NNP cord-002530-ao7kenbx 267 22 infection infection NN cord-002530-ao7kenbx 267 23 to to TO cord-002530-ao7kenbx 267 24 block block VB cord-002530-ao7kenbx 267 25 protein protein NN cord-002530-ao7kenbx 267 26 biosynthesis biosynthesis NN cord-002530-ao7kenbx 267 27 . . . cord-002530-ao7kenbx 268 1 Laboratory laboratory NN cord-002530-ao7kenbx 268 2 adapted adapt VBD cord-002530-ao7kenbx 268 3 HCMV HCMV NNP cord-002530-ao7kenbx 268 4 strain strain NN cord-002530-ao7kenbx 268 5 AD169 ad169 NN cord-002530-ao7kenbx 268 6 infected infected JJ cord-002530-ao7kenbx 268 7 cells cell NNS cord-002530-ao7kenbx 268 8 were be VBD cord-002530-ao7kenbx 268 9 fixed fix VBN cord-002530-ao7kenbx 268 10 and and CC cord-002530-ao7kenbx 268 11 permeabilized permeabilize VBN cord-002530-ao7kenbx 268 12 in in IN cord-002530-ao7kenbx 268 13 Methanol methanol NN cord-002530-ao7kenbx 268 14 : : : cord-002530-ao7kenbx 268 15 Acetone acetone NN cord-002530-ao7kenbx 268 16 solution solution NN cord-002530-ao7kenbx 268 17 ( ( -LRB- cord-002530-ao7kenbx 268 18 1:1 1:1 CD cord-002530-ao7kenbx 268 19 ) ) -RRB- cord-002530-ao7kenbx 268 20 for for IN cord-002530-ao7kenbx 268 21 7 7 CD cord-002530-ao7kenbx 268 22 minutes minute NNS cord-002530-ao7kenbx 268 23 , , , cord-002530-ao7kenbx 268 24 and and CC cord-002530-ao7kenbx 268 25 then then RB cord-002530-ao7kenbx 268 26 blocked block VBD cord-002530-ao7kenbx 268 27 with with IN cord-002530-ao7kenbx 268 28 5 5 CD cord-002530-ao7kenbx 268 29 % % NN cord-002530-ao7kenbx 268 30 human human JJ cord-002530-ao7kenbx 268 31 serum serum NN cord-002530-ao7kenbx 268 32 in in IN cord-002530-ao7kenbx 268 33 PBS PBS NNP cord-002530-ao7kenbx 268 34 for for IN cord-002530-ao7kenbx 268 35 30 30 CD cord-002530-ao7kenbx 268 36 minutes minute NNS cord-002530-ao7kenbx 268 37 . . . cord-002530-ao7kenbx 269 1 Primary primary JJ cord-002530-ao7kenbx 269 2 and and CC cord-002530-ao7kenbx 269 3 secondary secondary JJ cord-002530-ao7kenbx 269 4 antibodies antibody NNS cord-002530-ao7kenbx 269 5 were be VBD cord-002530-ao7kenbx 269 6 diluted dilute VBN cord-002530-ao7kenbx 269 7 with with IN cord-002530-ao7kenbx 269 8 5 5 CD cord-002530-ao7kenbx 269 9 % % NN cord-002530-ao7kenbx 269 10 human human JJ cord-002530-ao7kenbx 269 11 serum serum NN cord-002530-ao7kenbx 269 12 in in IN cord-002530-ao7kenbx 269 13 PBS PBS NNP cord-002530-ao7kenbx 269 14 . . . cord-002530-ao7kenbx 270 1 Cells cell NNS cord-002530-ao7kenbx 270 2 were be VBD cord-002530-ao7kenbx 270 3 washed wash VBN cord-002530-ao7kenbx 270 4 with with IN cord-002530-ao7kenbx 270 5 PBS PBS NNP cord-002530-ao7kenbx 270 6 after after IN cord-002530-ao7kenbx 270 7 primary primary JJ cord-002530-ao7kenbx 270 8 and and CC cord-002530-ao7kenbx 270 9 after after IN cord-002530-ao7kenbx 270 10 secondary secondary JJ cord-002530-ao7kenbx 270 11 antibody antibody NN cord-002530-ao7kenbx 270 12 incubations incubation NNS cord-002530-ao7kenbx 270 13 . . . cord-002530-ao7kenbx 271 1 Primary primary JJ cord-002530-ao7kenbx 271 2 antibodies antibody NNS cord-002530-ao7kenbx 271 3 used use VBN cord-002530-ao7kenbx 271 4 in in IN cord-002530-ao7kenbx 271 5 this this DT cord-002530-ao7kenbx 271 6 paper paper NN cord-002530-ao7kenbx 271 7 are be VBP cord-002530-ao7kenbx 271 8 mouse mouse NN cord-002530-ao7kenbx 271 9 anti anti JJ cord-002530-ao7kenbx 271 10 - - JJ cord-002530-ao7kenbx 271 11 CMV cmv JJ cord-002530-ao7kenbx 271 12 IE2 ie2 JJ cord-002530-ao7kenbx 271 13 monoclonal monoclonal JJ cord-002530-ao7kenbx 271 14 antibody antibody NN cord-002530-ao7kenbx 271 15 ( ( -LRB- cord-002530-ao7kenbx 271 16 12E2 12e2 CD cord-002530-ao7kenbx 271 17 , , , cord-002530-ao7kenbx 271 18 Santa Santa NNP cord-002530-ao7kenbx 271 19 Cruz Cruz NNP cord-002530-ao7kenbx 271 20 Biotechnology Biotechnology NNP cord-002530-ao7kenbx 271 21 ) ) -RRB- cord-002530-ao7kenbx 271 22 , , , cord-002530-ao7kenbx 271 23 rabbit rabbit NN cord-002530-ao7kenbx 271 24 anti anti JJ cord-002530-ao7kenbx 271 25 - - JJ cord-002530-ao7kenbx 271 26 VCP vcp JJ cord-002530-ao7kenbx 271 27 polyclonal polyclonal JJ cord-002530-ao7kenbx 271 28 antibody antibody NN cord-002530-ao7kenbx 271 29 ( ( -LRB- cord-002530-ao7kenbx 271 30 H-120 h-120 RB cord-002530-ao7kenbx 271 31 , , , cord-002530-ao7kenbx 271 32 Santa Santa NNP cord-002530-ao7kenbx 271 33 Cruz Cruz NNP cord-002530-ao7kenbx 271 34 Biotechnology Biotechnology NNP cord-002530-ao7kenbx 271 35 ) ) -RRB- cord-002530-ao7kenbx 271 36 at at IN cord-002530-ao7kenbx 271 37 1:500 1:500 CD cord-002530-ao7kenbx 271 38 . . . cord-002530-ao7kenbx 272 1 Alexa Alexa NNP cord-002530-ao7kenbx 272 2 - - HYPH cord-002530-ao7kenbx 272 3 fluor-647 fluor-647 JJ cord-002530-ao7kenbx 272 4 conjugated conjugate VBN cord-002530-ao7kenbx 272 5 goat goat NN cord-002530-ao7kenbx 272 6 anti anti JJ cord-002530-ao7kenbx 272 7 - - JJ cord-002530-ao7kenbx 272 8 mouse mouse NN cord-002530-ao7kenbx 272 9 or or CC cord-002530-ao7kenbx 272 10 Alexa Alexa NNP cord-002530-ao7kenbx 272 11 - - HYPH cord-002530-ao7kenbx 272 12 fluor-488 fluor-488 NNP cord-002530-ao7kenbx 272 13 conjugated conjugated JJ cord-002530-ao7kenbx 272 14 goatanti goatanti NN cord-002530-ao7kenbx 272 15 - - HYPH cord-002530-ao7kenbx 272 16 rabbit rabbit NN cord-002530-ao7kenbx 272 17 IgG IgG NNP cord-002530-ao7kenbx 272 18 secondary secondary JJ cord-002530-ao7kenbx 272 19 antibodies antibody NNS cord-002530-ao7kenbx 272 20 were be VBD cord-002530-ao7kenbx 272 21 diluted dilute VBN cord-002530-ao7kenbx 272 22 1:1000 1:1000 CD cord-002530-ao7kenbx 272 23 . . . cord-002530-ao7kenbx 273 1 All all DT cord-002530-ao7kenbx 273 2 images image NNS cord-002530-ao7kenbx 273 3 were be VBD cord-002530-ao7kenbx 273 4 acquired acquire VBN cord-002530-ao7kenbx 273 5 with with IN cord-002530-ao7kenbx 273 6 Zeiss Zeiss NNP cord-002530-ao7kenbx 273 7 LSM LSM NNP cord-002530-ao7kenbx 273 8 710 710 CD cord-002530-ao7kenbx 273 9 confocal confocal JJ cord-002530-ao7kenbx 273 10 microscope microscope NN cord-002530-ao7kenbx 273 11 fitted fit VBN cord-002530-ao7kenbx 273 12 with with IN cord-002530-ao7kenbx 273 13 63X/1.4 63x/1.4 CD cord-002530-ao7kenbx 273 14 oil oil NN cord-002530-ao7kenbx 273 15 - - HYPH cord-002530-ao7kenbx 273 16 immersion immersion NN cord-002530-ao7kenbx 273 17 objective objective JJ cord-002530-ao7kenbx 273 18 lens lens NN cord-002530-ao7kenbx 273 19 . . . cord-002530-ao7kenbx 274 1 Total Total NNP cord-002530-ao7kenbx 274 2 RNA RNA NNP cord-002530-ao7kenbx 274 3 was be VBD cord-002530-ao7kenbx 274 4 isolated isolate VBN cord-002530-ao7kenbx 274 5 by by IN cord-002530-ao7kenbx 274 6 using use VBG cord-002530-ao7kenbx 274 7 Trizol Trizol NNP cord-002530-ao7kenbx 274 8 solution solution NN cord-002530-ao7kenbx 274 9 according accord VBG cord-002530-ao7kenbx 274 10 to to IN cord-002530-ao7kenbx 274 11 the the DT cord-002530-ao7kenbx 274 12 manufacturer manufacturer NN cord-002530-ao7kenbx 274 13 's 's POS cord-002530-ao7kenbx 274 14 protocol protocol NN cord-002530-ao7kenbx 274 15 followed follow VBN cord-002530-ao7kenbx 274 16 by by IN cord-002530-ao7kenbx 274 17 DNase DNase NNP cord-002530-ao7kenbx 274 18 ( ( -LRB- cord-002530-ao7kenbx 274 19 Turbo turbo JJ cord-002530-ao7kenbx 274 20 DNA dna NN cord-002530-ao7kenbx 274 21 - - HYPH cord-002530-ao7kenbx 274 22 free free JJ cord-002530-ao7kenbx 274 23 kit kit NN cord-002530-ao7kenbx 274 24 , , , cord-002530-ao7kenbx 274 25 Ambion Ambion NNP cord-002530-ao7kenbx 274 26 ) ) -RRB- cord-002530-ao7kenbx 274 27 treatment treatment NN cord-002530-ao7kenbx 274 28 , , , cord-002530-ao7kenbx 274 29 and and CC cord-002530-ao7kenbx 274 30 then then RB cord-002530-ao7kenbx 274 31 reverse reverse VB cord-002530-ao7kenbx 274 32 transcribed transcribe VBN cord-002530-ao7kenbx 274 33 with with IN cord-002530-ao7kenbx 274 34 poly poly NNP cord-002530-ao7kenbx 274 35 T T NNP cord-002530-ao7kenbx 274 36 primers primer NNS cord-002530-ao7kenbx 274 37 using use VBG cord-002530-ao7kenbx 274 38 High High NNP cord-002530-ao7kenbx 274 39 Capacity Capacity NNP cord-002530-ao7kenbx 274 40 cDNA cdna NN cord-002530-ao7kenbx 274 41 Reverse Reverse NNP cord-002530-ao7kenbx 274 42 Transcription Transcription NNP cord-002530-ao7kenbx 274 43 Kit kit NN cord-002530-ao7kenbx 274 44 ( ( -LRB- cord-002530-ao7kenbx 274 45 Invitrogen Invitrogen NNP cord-002530-ao7kenbx 274 46 ) ) -RRB- cord-002530-ao7kenbx 274 47 . . . cord-002530-ao7kenbx 275 1 Real real JJ cord-002530-ao7kenbx 275 2 - - HYPH cord-002530-ao7kenbx 275 3 Time time NN cord-002530-ao7kenbx 275 4 PCR PCR NNP cord-002530-ao7kenbx 275 5 was be VBD cord-002530-ao7kenbx 275 6 carried carry VBN cord-002530-ao7kenbx 275 7 out out RP cord-002530-ao7kenbx 275 8 using use VBG cord-002530-ao7kenbx 275 9 by by IN cord-002530-ao7kenbx 275 10 Taqman Taqman NNP cord-002530-ao7kenbx 275 11 assays assay NNS cord-002530-ao7kenbx 275 12 with with IN cord-002530-ao7kenbx 275 13 pre pre JJ cord-002530-ao7kenbx 275 14 - - JJ cord-002530-ao7kenbx 275 15 designed design VBN cord-002530-ao7kenbx 275 16 gene gene NN cord-002530-ao7kenbx 275 17 - - HYPH cord-002530-ao7kenbx 275 18 specific specific JJ cord-002530-ao7kenbx 275 19 primer primer NN cord-002530-ao7kenbx 275 20 / / SYM cord-002530-ao7kenbx 275 21 probe probe NN cord-002530-ao7kenbx 275 22 set set NN cord-002530-ao7kenbx 275 23 ( ( -LRB- cord-002530-ao7kenbx 275 24 Applied Applied NNP cord-002530-ao7kenbx 275 25 Biosystems Biosystems NNP cord-002530-ao7kenbx 275 26 ) ) -RRB- cord-002530-ao7kenbx 275 27 on on IN cord-002530-ao7kenbx 275 28 Rotor rotor NN cord-002530-ao7kenbx 275 29 gene gene NN cord-002530-ao7kenbx 275 30 3000 3000 CD cord-002530-ao7kenbx 275 31 ( ( -LRB- cord-002530-ao7kenbx 275 32 Corbet Corbet NNP cord-002530-ao7kenbx 275 33 Research Research NNP cord-002530-ao7kenbx 275 34 ) ) -RRB- cord-002530-ao7kenbx 275 35 . . . cord-002530-ao7kenbx 276 1 Custom custom NN cord-002530-ao7kenbx 276 2 primer primer NN cord-002530-ao7kenbx 276 3 / / SYM cord-002530-ao7kenbx 276 4 probe probe NN cord-002530-ao7kenbx 276 5 set set VBN cord-002530-ao7kenbx 276 6 are be VBP cord-002530-ao7kenbx 276 7 CGTCAAACAGATTAAGGTTCGAGTGG CGTCAAACAGATTAAGGTTCGAGTGG NNP cord-002530-ao7kenbx 276 8 , , , cord-002530-ao7kenbx 276 9 CCACATCTCCCGCTTATCCTCG CCACATCTCCCGCTTATCCTCG NNP cord-002530-ao7kenbx 276 10 , , , cord-002530-ao7kenbx 276 11 and and CC cord-002530-ao7kenbx 276 12 56-FAM 56-fam CD cord-002530-ao7kenbx 276 13 / / SYM cord-002530-ao7kenbx 276 14 CATGCTCTG CATGCTCTG NNP cord-002530-ao7kenbx 276 15 / / SYM cord-002530-ao7kenbx 276 16 ZEN ZEN NNP cord-002530-ao7kenbx 276 17 / / SYM cord-002530-ao7kenbx 276 18 CATAGTTAGCCCAATACACTTCATCTC CATAGTTAGCCCAATACACTTCATCTC NNP cord-002530-ao7kenbx 276 19 - - HYPH cord-002530-ao7kenbx 276 20 CTCG/3IABkFQ CTCG/3IABkFQ NNP cord-002530-ao7kenbx 276 21 for for IN cord-002530-ao7kenbx 276 22 IE1 ie1 NN cord-002530-ao7kenbx 276 23 , , , cord-002530-ao7kenbx 276 24 and and CC cord-002530-ao7kenbx 276 25 ATGGTGCGCATCTTCTCCACC ATGGTGCGCATCTTCTCCACC NNP cord-002530-ao7kenbx 276 26 , , , cord-002530-ao7kenbx 276 27 TTACTGAGACTTGTTCCTCAGGTCCTG TTACTGAGACTTGTTCCTCAGGTCCTG NNP cord-002530-ao7kenbx 276 28 , , , cord-002530-ao7kenbx 276 29 and and CC cord-002530-ao7kenbx 276 30 56-FAM 56-fam CD cord-002530-ao7kenbx 276 31 / / SYM cord-002530-ao7kenbx 276 32 CAGGCTCAG CAGGCTCAG NNP cord-002530-ao7kenbx 276 33 / / SYM cord-002530-ao7kenbx 276 34 ZEN ZEN NNP cord-002530-ao7kenbx 276 35 / / SYM cord-002530-ao7kenbx 276 36 GGTGTCCAGGTCTTCGGGAGG/3IABkFQ GGTGTCCAGGTCTTCGGGAGG/3IABkFQ NNP cord-002530-ao7kenbx 276 37 for for IN cord-002530-ao7kenbx 276 38 IE2 ie2 NN cord-002530-ao7kenbx 276 39 . . . cord-002530-ao7kenbx 277 1 Cells cell NNS cord-002530-ao7kenbx 277 2 were be VBD cord-002530-ao7kenbx 277 3 harvested harvest VBN cord-002530-ao7kenbx 277 4 with with IN cord-002530-ao7kenbx 277 5 trypsin trypsin NN cord-002530-ao7kenbx 277 6 , , , cord-002530-ao7kenbx 277 7 washed wash VBN cord-002530-ao7kenbx 277 8 with with IN cord-002530-ao7kenbx 277 9 PBS PBS NNP cord-002530-ao7kenbx 277 10 , , , cord-002530-ao7kenbx 277 11 and and CC cord-002530-ao7kenbx 277 12 followed follow VBN cord-002530-ao7kenbx 277 13 by by IN cord-002530-ao7kenbx 277 14 fix fix NN cord-002530-ao7kenbx 277 15 with with IN cord-002530-ao7kenbx 277 16 70 70 CD cord-002530-ao7kenbx 277 17 % % NN cord-002530-ao7kenbx 277 18 cold cold JJ cord-002530-ao7kenbx 277 19 ethanol ethanol NN cord-002530-ao7kenbx 277 20 for for IN cord-002530-ao7kenbx 277 21 30 30 CD cord-002530-ao7kenbx 277 22 minutes minute NNS cord-002530-ao7kenbx 277 23 at at IN cord-002530-ao7kenbx 277 24 4˚C. 4˚c. CD cord-002530-ao7kenbx 278 1 Then then RB cord-002530-ao7kenbx 278 2 the the DT cord-002530-ao7kenbx 278 3 fixed fix VBN cord-002530-ao7kenbx 278 4 cells cell NNS cord-002530-ao7kenbx 278 5 were be VBD cord-002530-ao7kenbx 278 6 washed wash VBN cord-002530-ao7kenbx 278 7 twice twice RB cord-002530-ao7kenbx 278 8 with with IN cord-002530-ao7kenbx 278 9 PBS PBS NNP cord-002530-ao7kenbx 278 10 , , , cord-002530-ao7kenbx 278 11 treated treat VBN cord-002530-ao7kenbx 278 12 with with IN cord-002530-ao7kenbx 278 13 RNaseA RNaseA NNP cord-002530-ao7kenbx 278 14 , , , cord-002530-ao7kenbx 278 15 and and CC cord-002530-ao7kenbx 278 16 labelled label VBN cord-002530-ao7kenbx 278 17 with with IN cord-002530-ao7kenbx 278 18 10 10 CD cord-002530-ao7kenbx 278 19 μl μl NN cord-002530-ao7kenbx 278 20 of of IN cord-002530-ao7kenbx 278 21 propidium propidium NN cord-002530-ao7kenbx 278 22 iodide iodide NN cord-002530-ao7kenbx 278 23 ( ( -LRB- cord-002530-ao7kenbx 278 24 1 1 CD cord-002530-ao7kenbx 278 25 mg mg NNP cord-002530-ao7kenbx 278 26 / / SYM cord-002530-ao7kenbx 278 27 ml ml NN cord-002530-ao7kenbx 278 28 stock stock NN cord-002530-ao7kenbx 278 29 solution solution NN cord-002530-ao7kenbx 278 30 , , , cord-002530-ao7kenbx 278 31 Sigma Sigma NNP cord-002530-ao7kenbx 278 32 ) ) -RRB- cord-002530-ao7kenbx 278 33 . . . cord-002530-ao7kenbx 279 1 Cell cell NN cord-002530-ao7kenbx 279 2 cycle cycle NN cord-002530-ao7kenbx 279 3 analysis analysis NN cord-002530-ao7kenbx 279 4 was be VBD cord-002530-ao7kenbx 279 5 first first RB cord-002530-ao7kenbx 279 6 carried carry VBN cord-002530-ao7kenbx 279 7 out out RP cord-002530-ao7kenbx 279 8 using use VBG cord-002530-ao7kenbx 279 9 BD BD NNP cord-002530-ao7kenbx 279 10 LSRFortessa LSRFortessa NNP cord-002530-ao7kenbx 279 11 X20 X20 NNP cord-002530-ao7kenbx 279 12 , , , cord-002530-ao7kenbx 279 13 and and CC cord-002530-ao7kenbx 279 14 then then RB cord-002530-ao7kenbx 279 15 further further RB cord-002530-ao7kenbx 279 16 analyzed analyze VBD cord-002530-ao7kenbx 279 17 using use VBG cord-002530-ao7kenbx 279 18 FlowJo FlowJo NNP cord-002530-ao7kenbx 279 19 software software NN cord-002530-ao7kenbx 279 20 . . . cord-002530-ao7kenbx 280 1 Quantification quantification NN cord-002530-ao7kenbx 280 2 of of IN cord-002530-ao7kenbx 280 3 difference difference NN cord-002530-ao7kenbx 280 4 in in IN cord-002530-ao7kenbx 280 5 IE1 ie1 NN cord-002530-ao7kenbx 280 6 protein protein NN cord-002530-ao7kenbx 280 7 levels level NNS cord-002530-ao7kenbx 280 8 between between IN cord-002530-ao7kenbx 280 9 knockdown knockdown NN cord-002530-ao7kenbx 280 10 of of IN cord-002530-ao7kenbx 280 11 VCP VCP NNP cord-002530-ao7kenbx 280 12 versus versus IN cord-002530-ao7kenbx 280 13 ganciclovir ganciclovir NNP cord-002530-ao7kenbx 280 14 treatment treatment NN cord-002530-ao7kenbx 280 15 . . . cord-002530-ao7kenbx 281 1 Quantification quantification NN cord-002530-ao7kenbx 281 2 is be VBZ cord-002530-ao7kenbx 281 3 compared compare VBN cord-002530-ao7kenbx 281 4 to to IN cord-002530-ao7kenbx 281 5 negative negative JJ cord-002530-ao7kenbx 281 6 control control NN cord-002530-ao7kenbx 281 7 for for IN cord-002530-ao7kenbx 281 8 each each DT cord-002530-ao7kenbx 281 9 time time NN cord-002530-ao7kenbx 281 10 point point NN cord-002530-ao7kenbx 281 11 . . . cord-002530-ao7kenbx 282 1 ( ( -LRB- cord-002530-ao7kenbx 282 2 D D NNP cord-002530-ao7kenbx 282 3 ) ) -RRB- cord-002530-ao7kenbx 282 4 Relative Relative NNP cord-002530-ao7kenbx 282 5 IE1 ie1 NN cord-002530-ao7kenbx 282 6 and and CC cord-002530-ao7kenbx 282 7 IE2 ie2 NN cord-002530-ao7kenbx 282 8 transcript transcript NN cord-002530-ao7kenbx 282 9 levels level NNS cord-002530-ao7kenbx 282 10 normalised normalise VBN cord-002530-ao7kenbx 282 11 to to IN cord-002530-ao7kenbx 282 12 MIE MIE NNP cord-002530-ao7kenbx 282 13 shared share VBN cord-002530-ao7kenbx 282 14 exons exon NNS cord-002530-ao7kenbx 282 15 . . . cord-002530-ao7kenbx 283 1 Levels level NNS cord-002530-ao7kenbx 283 2 were be VBD cord-002530-ao7kenbx 283 3 determined determine VBN cord-002530-ao7kenbx 283 4 by by IN cord-002530-ao7kenbx 283 5 qRT qRT NNP cord-002530-ao7kenbx 283 6 - - HYPH cord-002530-ao7kenbx 283 7 PCR PCR NNP cord-002530-ao7kenbx 283 8 using use VBG cord-002530-ao7kenbx 283 9 primer primer NN cord-002530-ao7kenbx 283 10 probes probe NNS cord-002530-ao7kenbx 283 11 specific specific JJ cord-002530-ao7kenbx 283 12 to to IN cord-002530-ao7kenbx 283 13 exon exon NN cord-002530-ao7kenbx 283 14 1 1 CD cord-002530-ao7kenbx 283 15 to to IN cord-002530-ao7kenbx 283 16 3 3 CD cord-002530-ao7kenbx 283 17 , , , cord-002530-ao7kenbx 283 18 exon exon NN cord-002530-ao7kenbx 283 19 4 4 CD cord-002530-ao7kenbx 283 20 or or CC cord-002530-ao7kenbx 283 21 exon exon NN cord-002530-ao7kenbx 283 22 5 5 CD cord-002530-ao7kenbx 283 23 . . . cord-002530-ao7kenbx 284 1 Exon Exon NNP cord-002530-ao7kenbx 284 2 4 4 CD cord-002530-ao7kenbx 284 3 and and CC cord-002530-ao7kenbx 284 4 5 5 CD cord-002530-ao7kenbx 284 5 levels level NNS cord-002530-ao7kenbx 284 6 were be VBD cord-002530-ao7kenbx 284 7 then then RB cord-002530-ao7kenbx 284 8 normalised normalise VBN cord-002530-ao7kenbx 284 9 to to TO cord-002530-ao7kenbx 284 10 exon exon NN cord-002530-ao7kenbx 284 11 1 1 CD cord-002530-ao7kenbx 284 12 - - SYM cord-002530-ao7kenbx 284 13 3 3 CD cord-002530-ao7kenbx 284 14 for for IN cord-002530-ao7kenbx 284 15 VCP VCP NNP cord-002530-ao7kenbx 284 16 knockdown knockdown NN cord-002530-ao7kenbx 284 17 cells cell NNS cord-002530-ao7kenbx 284 18 ( ( -LRB- cord-002530-ao7kenbx 284 19 D D NNP cord-002530-ao7kenbx 284 20 ) ) -RRB- cord-002530-ao7kenbx 284 21 or or CC cord-002530-ao7kenbx 284 22 cells cell NNS cord-002530-ao7kenbx 284 23 treated treat VBN cord-002530-ao7kenbx 284 24 with with IN cord-002530-ao7kenbx 284 25 Ganciclovir Ganciclovir NNP cord-002530-ao7kenbx 284 26 ( ( -LRB- cord-002530-ao7kenbx 284 27 5 5 CD cord-002530-ao7kenbx 284 28 μM μM NNP cord-002530-ao7kenbx 284 29 ) ) -RRB- cord-002530-ao7kenbx 284 30 . . . cord-002530-ao7kenbx 285 1 Cells cell NNS cord-002530-ao7kenbx 285 2 were be VBD cord-002530-ao7kenbx 285 3 treated treat VBN cord-002530-ao7kenbx 285 4 100 100 CD cord-002530-ao7kenbx 285 5 μg μg NNS cord-002530-ao7kenbx 285 6 / / SYM cord-002530-ao7kenbx 285 7 ml ml NN cord-002530-ao7kenbx 285 8 cycloheximide cycloheximide NN cord-002530-ao7kenbx 285 9 , , , cord-002530-ao7kenbx 285 10 30 30 CD cord-002530-ao7kenbx 285 11 minutes minute NNS cord-002530-ao7kenbx 285 12 prior prior RB cord-002530-ao7kenbx 285 13 to to IN cord-002530-ao7kenbx 285 14 infection infection NN cord-002530-ao7kenbx 285 15 to to TO cord-002530-ao7kenbx 285 16 block block VB cord-002530-ao7kenbx 285 17 de de NNP cord-002530-ao7kenbx 285 18 novo novo NNP cord-002530-ao7kenbx 285 19 protein protein NNP cord-002530-ao7kenbx 285 20 synthesis synthesis NNP cord-002530-ao7kenbx 285 21 and and CC cord-002530-ao7kenbx 285 22 total total JJ cord-002530-ao7kenbx 285 23 RNA RNA NNP cord-002530-ao7kenbx 285 24 harvested harvest VBN cord-002530-ao7kenbx 285 25 at at IN cord-002530-ao7kenbx 285 26 indicated indicate VBN cord-002530-ao7kenbx 285 27 times time NNS cord-002530-ao7kenbx 285 28 . . . cord-002530-ao7kenbx 286 1 IE1 ie1 NN cord-002530-ao7kenbx 286 2 and and CC cord-002530-ao7kenbx 286 3 IE2 IE2 NNP cord-002530-ao7kenbx 286 4 transcript transcript NN cord-002530-ao7kenbx 286 5 levels level NNS cord-002530-ao7kenbx 286 6 were be VBD cord-002530-ao7kenbx 286 7 determined determine VBN cord-002530-ao7kenbx 286 8 by by IN cord-002530-ao7kenbx 286 9 Northern northern JJ cord-002530-ao7kenbx 286 10 blot blot NN cord-002530-ao7kenbx 286 11 analysis analysis NN cord-002530-ao7kenbx 286 12 . . . cord-002530-ao7kenbx 287 1 ( ( -LRB- cord-002530-ao7kenbx 287 2 DOCX DOCX NNP cord-002530-ao7kenbx 287 3 ) ) -RRB- cord-002530-ao7kenbx 287 4 S1 S1 NNP cord-002530-ao7kenbx 287 5 Table Table NNP cord-002530-ao7kenbx 287 6 . . . cord-002530-ao7kenbx 288 1 siRNA siRNA NNP cord-002530-ao7kenbx 288 2 screen screen NNP cord-002530-ao7kenbx 288 3 data datum NNS cord-002530-ao7kenbx 288 4 . . . cord-002530-ao7kenbx 289 1 Raw raw JJ cord-002530-ao7kenbx 289 2 data datum NNS cord-002530-ao7kenbx 289 3 from from IN cord-002530-ao7kenbx 289 4 the the DT cord-002530-ao7kenbx 289 5 three three CD cord-002530-ao7kenbx 289 6 repeated repeat VBN cord-002530-ao7kenbx 289 7 siRNA siRNA NNP cord-002530-ao7kenbx 289 8 screens screen NNS cord-002530-ao7kenbx 289 9 including include VBG cord-002530-ao7kenbx 289 10 technical technical JJ cord-002530-ao7kenbx 289 11 repeats repeat NNS cord-002530-ao7kenbx 289 12 . . . cord-002530-ao7kenbx 290 1 Average average JJ cord-002530-ao7kenbx 290 2 over over IN cord-002530-ao7kenbx 290 3 the the DT cord-002530-ao7kenbx 290 4 three three CD cord-002530-ao7kenbx 290 5 experiments experiment NNS cord-002530-ao7kenbx 290 6 as as RB cord-002530-ao7kenbx 290 7 well well RB cord-002530-ao7kenbx 290 8 as as IN cord-002530-ao7kenbx 290 9 Z z NN cord-002530-ao7kenbx 290 10 scores score NNS cord-002530-ao7kenbx 290 11 and and CC cord-002530-ao7kenbx 290 12 standard standard JJ cord-002530-ao7kenbx 290 13 deviations deviation NNS cord-002530-ao7kenbx 290 14 are be VBP cord-002530-ao7kenbx 290 15 shown show VBN cord-002530-ao7kenbx 290 16 . . . cord-002530-ao7kenbx 291 1 ( ( -LRB- cord-002530-ao7kenbx 291 2 XLSX XLSX NNP cord-002530-ao7kenbx 291 3 ) ) -RRB- cord-002530-ao7kenbx 291 4 S2 S2 NNP cord-002530-ao7kenbx 291 5 Table Table NNP cord-002530-ao7kenbx 291 6 . . . cord-002530-ao7kenbx 292 1 Exon Exon NNP cord-002530-ao7kenbx 292 2 read read VBD cord-002530-ao7kenbx 292 3 count count NN cord-002530-ao7kenbx 292 4 ratios ratio NNS cord-002530-ao7kenbx 292 5 . . . cord-002530-ao7kenbx 293 1 Total total JJ cord-002530-ao7kenbx 293 2 read read NN cord-002530-ao7kenbx 293 3 counts count VBZ cord-002530-ao7kenbx 293 4 for for IN cord-002530-ao7kenbx 293 5 each each DT cord-002530-ao7kenbx 293 6 of of IN cord-002530-ao7kenbx 293 7 the the DT cord-002530-ao7kenbx 293 8 five five CD cord-002530-ao7kenbx 293 9 exons exon NNS cord-002530-ao7kenbx 293 10 for for IN cord-002530-ao7kenbx 293 11 each each DT cord-002530-ao7kenbx 293 12 condition condition NN cord-002530-ao7kenbx 293 13 are be VBP cord-002530-ao7kenbx 293 14 shown show VBN cord-002530-ao7kenbx 293 15 along along IN cord-002530-ao7kenbx 293 16 with with IN cord-002530-ao7kenbx 293 17 ratio ratio NN cord-002530-ao7kenbx 293 18 to to IN cord-002530-ao7kenbx 293 19 total total JJ cord-002530-ao7kenbx 293 20 calculations calculation NNS cord-002530-ao7kenbx 293 21 and and CC cord-002530-ao7kenbx 293 22 differential differential NN cord-002530-ao7kenbx 293 23 between between IN cord-002530-ao7kenbx 293 24 negative negative JJ cord-002530-ao7kenbx 293 25 control control NN cord-002530-ao7kenbx 293 26 and and CC cord-002530-ao7kenbx 293 27 VCP VCP NNP cord-002530-ao7kenbx 293 28 knockdown knockdown NN cord-002530-ao7kenbx 293 29 samples sample NNS cord-002530-ao7kenbx 293 30 . . . cord-002530-ao7kenbx 294 1 ( ( -LRB- cord-002530-ao7kenbx 294 2 XLSX XLSX NNP cord-002530-ao7kenbx 294 3 ) ) -RRB- cord-002530-ao7kenbx 294 4 S3 S3 NNP cord-002530-ao7kenbx 294 5 Table Table NNP cord-002530-ao7kenbx 294 6 . . . cord-002530-ao7kenbx 295 1 Splice splice NN cord-002530-ao7kenbx 295 2 junction junction NN cord-002530-ao7kenbx 295 3 counts count NNS cord-002530-ao7kenbx 295 4 . . . cord-002530-ao7kenbx 296 1 Total total JJ cord-002530-ao7kenbx 296 2 read read NN cord-002530-ao7kenbx 296 3 counts count VBZ cord-002530-ao7kenbx 296 4 across across IN cord-002530-ao7kenbx 296 5 each each DT cord-002530-ao7kenbx 296 6 of of IN cord-002530-ao7kenbx 296 7 the the DT cord-002530-ao7kenbx 296 8 3 3 CD cord-002530-ao7kenbx 296 9 MIE MIE NNP cord-002530-ao7kenbx 296 10 junctions junction NNS cord-002530-ao7kenbx 296 11 are be VBP cord-002530-ao7kenbx 296 12 shown show VBN cord-002530-ao7kenbx 296 13 along along IN cord-002530-ao7kenbx 296 14 with with IN cord-002530-ao7kenbx 296 15 ratio ratio NN cord-002530-ao7kenbx 296 16 calculations calculation NNS cord-002530-ao7kenbx 296 17 defining define VBG cord-002530-ao7kenbx 296 18 the the DT cord-002530-ao7kenbx 296 19 differential differential NN cord-002530-ao7kenbx 296 20 between between IN cord-002530-ao7kenbx 296 21 exon exon NN cord-002530-ao7kenbx 296 22 2 2 CD cord-002530-ao7kenbx 296 23 to to IN cord-002530-ao7kenbx 296 24 3 3 CD cord-002530-ao7kenbx 296 25 , , , cord-002530-ao7kenbx 296 26 3 3 CD cord-002530-ao7kenbx 296 27 to to IN cord-002530-ao7kenbx 296 28 4 4 CD cord-002530-ao7kenbx 296 29 and and CC cord-002530-ao7kenbx 296 30 3 3 CD cord-002530-ao7kenbx 296 31 to to TO cord-002530-ao7kenbx 296 32 5 5 CD cord-002530-ao7kenbx 296 33 in in IN cord-002530-ao7kenbx 296 34 log log NN cord-002530-ao7kenbx 296 35 2 2 CD cord-002530-ao7kenbx 296 36 . . . cord-002530-ao7kenbx 297 1 ( ( -LRB- cord-002530-ao7kenbx 297 2 XLSX XLSX NNP cord-002530-ao7kenbx 297 3 ) ) -RRB- cord-002530-ao7kenbx 297 4 S4 S4 NNP cord-002530-ao7kenbx 297 5 Table Table NNP cord-002530-ao7kenbx 297 6 . . . cord-002530-ao7kenbx 298 1 Relative relative JJ cord-002530-ao7kenbx 298 2 expression expression NN cord-002530-ao7kenbx 298 3 levels level NNS cord-002530-ao7kenbx 298 4 of of IN cord-002530-ao7kenbx 298 5 exons exon NNS cord-002530-ao7kenbx 298 6 4 4 CD cord-002530-ao7kenbx 298 7 and and CC cord-002530-ao7kenbx 298 8 5 5 CD cord-002530-ao7kenbx 298 9 are be VBP cord-002530-ao7kenbx 298 10 significantly significantly RB cord-002530-ao7kenbx 298 11 dependent dependent JJ cord-002530-ao7kenbx 298 12 on on IN cord-002530-ao7kenbx 298 13 the the DT cord-002530-ao7kenbx 298 14 combination combination NN cord-002530-ao7kenbx 298 15 of of IN cord-002530-ao7kenbx 298 16 timepoint timepoint NN cord-002530-ao7kenbx 298 17 and and CC cord-002530-ao7kenbx 298 18 VCP VCP NNP cord-002530-ao7kenbx 298 19 status status NN cord-002530-ao7kenbx 298 20 . . . cord-002530-ao7kenbx 299 1 Linear linear JJ cord-002530-ao7kenbx 299 2 model model NN cord-002530-ao7kenbx 299 3 results result NNS cord-002530-ao7kenbx 299 4 of of IN cord-002530-ao7kenbx 299 5 testing test VBG cord-002530-ao7kenbx 299 6 associations association NNS cord-002530-ao7kenbx 299 7 between between IN cord-002530-ao7kenbx 299 8 the the DT cord-002530-ao7kenbx 299 9 relative relative JJ cord-002530-ao7kenbx 299 10 expression expression NN cord-002530-ao7kenbx 299 11 levels level NNS cord-002530-ao7kenbx 299 12 of of IN cord-002530-ao7kenbx 299 13 each each DT cord-002530-ao7kenbx 299 14 exon exon NN cord-002530-ao7kenbx 299 15 and and CC cord-002530-ao7kenbx 299 16 both both DT cord-002530-ao7kenbx 299 17 time time NN cord-002530-ao7kenbx 299 18 and and CC cord-002530-ao7kenbx 299 19 siVCP sivcp DT cord-002530-ao7kenbx 299 20 treatment treatment NN cord-002530-ao7kenbx 299 21 . . . cord-002530-ao7kenbx 300 1 Relative relative JJ cord-002530-ao7kenbx 300 2 expression expression NN cord-002530-ao7kenbx 300 3 levels level NNS cord-002530-ao7kenbx 300 4 being be VBG cord-002530-ao7kenbx 300 5 measured measure VBN cord-002530-ao7kenbx 300 6 as as IN cord-002530-ao7kenbx 300 7 the the DT cord-002530-ao7kenbx 300 8 proportion proportion NN cord-002530-ao7kenbx 300 9 of of IN cord-002530-ao7kenbx 300 10 the the DT cord-002530-ao7kenbx 300 11 transcript transcript NN cord-002530-ao7kenbx 300 12 's 's POS cord-002530-ao7kenbx 300 13 reads read VBZ cord-002530-ao7kenbx 300 14 that that WDT cord-002530-ao7kenbx 300 15 mapped map VBD cord-002530-ao7kenbx 300 16 to to IN cord-002530-ao7kenbx 300 17 the the DT cord-002530-ao7kenbx 300 18 corresponding corresponding JJ cord-002530-ao7kenbx 300 19 exon exon NN cord-002530-ao7kenbx 300 20 in in IN cord-002530-ao7kenbx 300 21 that that DT cord-002530-ao7kenbx 300 22 sample sample NN cord-002530-ao7kenbx 300 23 . . . cord-002530-ao7kenbx 301 1 Coefficients coefficient NNS cord-002530-ao7kenbx 301 2 , , , cord-002530-ao7kenbx 301 3 standard standard JJ cord-002530-ao7kenbx 301 4 errors error NNS cord-002530-ao7kenbx 301 5 ( ( -LRB- cord-002530-ao7kenbx 301 6 in in IN cord-002530-ao7kenbx 301 7 brackets bracket NNS cord-002530-ao7kenbx 301 8 ) ) -RRB- cord-002530-ao7kenbx 301 9 and and CC cord-002530-ao7kenbx 301 10 p p NN cord-002530-ao7kenbx 301 11 values value NNS cord-002530-ao7kenbx 301 12 are be VBP cord-002530-ao7kenbx 301 13 shown show VBN cord-002530-ao7kenbx 301 14 . . . cord-002530-ao7kenbx 302 1 Associations association NNS cord-002530-ao7kenbx 302 2 between between IN cord-002530-ao7kenbx 302 3 relative relative JJ cord-002530-ao7kenbx 302 4 expression expression NN cord-002530-ao7kenbx 302 5 levels level NNS cord-002530-ao7kenbx 302 6 of of IN cord-002530-ao7kenbx 302 7 exons exon NNS cord-002530-ao7kenbx 302 8 4 4 CD cord-002530-ao7kenbx 302 9 and and CC cord-002530-ao7kenbx 302 10 5 5 CD cord-002530-ao7kenbx 302 11 and and CC cord-002530-ao7kenbx 302 12 timepoint timepoint NN cord-002530-ao7kenbx 302 13 are be VBP cord-002530-ao7kenbx 302 14 dependent dependent JJ cord-002530-ao7kenbx 302 15 on on IN cord-002530-ao7kenbx 302 16 VCP vcp NN cord-002530-ao7kenbx 302 17 status status NN cord-002530-ao7kenbx 302 18 as as IN cord-002530-ao7kenbx 302 19 demonstrated demonstrate VBN cord-002530-ao7kenbx 302 20 by by IN cord-002530-ao7kenbx 302 21 the the DT cord-002530-ao7kenbx 302 22 significant significant JJ cord-002530-ao7kenbx 302 23 interaction interaction NN cord-002530-ao7kenbx 302 24 term term NN cord-002530-ao7kenbx 302 25 ( ( -LRB- cord-002530-ao7kenbx 302 26 Time time NN cord-002530-ao7kenbx 302 27 : : : cord-002530-ao7kenbx 302 28 siVCP sivcp LS cord-002530-ao7kenbx 302 29 ) ) -RRB- cord-002530-ao7kenbx 302 30 . . . cord-002530-ao7kenbx 302 31 _SP cord-002530-ao7kenbx 303 1 Regulation regulation NN cord-002530-ao7kenbx 303 2 and and CC cord-002530-ao7kenbx 303 3 tissue tissue NN cord-002530-ao7kenbx 303 4 - - HYPH cord-002530-ao7kenbx 303 5 specific specific JJ cord-002530-ao7kenbx 303 6 expression expression NN cord-002530-ao7kenbx 303 7 of of IN cord-002530-ao7kenbx 303 8 human human JJ cord-002530-ao7kenbx 303 9 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 303 10 Cytomegalovirus Cytomegalovirus NNP cord-002530-ao7kenbx 303 11 disease disease NN cord-002530-ao7kenbx 303 12 of of IN cord-002530-ao7kenbx 303 13 late late JJ cord-002530-ao7kenbx 303 14 onset onset NN cord-002530-ao7kenbx 303 15 following follow VBG cord-002530-ao7kenbx 303 16 renal renal JJ cord-002530-ao7kenbx 303 17 transplantation transplantation NN cord-002530-ao7kenbx 303 18 : : : cord-002530-ao7kenbx 304 1 a a DT cord-002530-ao7kenbx 304 2 potentially potentially RB cord-002530-ao7kenbx 304 3 fatal fatal JJ cord-002530-ao7kenbx 304 4 entity entity NN cord-002530-ao7kenbx 304 5 Acquired acquire VBD cord-002530-ao7kenbx 304 6 cytomegalovirus cytomegalovirus JJ cord-002530-ao7kenbx 304 7 infection infection NN cord-002530-ao7kenbx 304 8 in in IN cord-002530-ao7kenbx 304 9 preterm preterm JJR cord-002530-ao7kenbx 304 10 infants infant NNS cord-002530-ao7kenbx 304 11 Transfusion transfusion NN cord-002530-ao7kenbx 304 12 - - HYPH cord-002530-ao7kenbx 304 13 associated associate VBN cord-002530-ao7kenbx 304 14 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 304 15 infections infection NNS cord-002530-ao7kenbx 304 16 Cytomegalovirus Cytomegalovirus NNP cord-002530-ao7kenbx 304 17 infection infection NN cord-002530-ao7kenbx 304 18 of of IN cord-002530-ao7kenbx 304 19 human human JJ cord-002530-ao7kenbx 304 20 blood blood NN cord-002530-ao7kenbx 304 21 cells cell NNS cord-002530-ao7kenbx 304 22 Death death NN cord-002530-ao7kenbx 304 23 in in IN cord-002530-ao7kenbx 304 24 the the DT cord-002530-ao7kenbx 304 25 AIDS AIDS NNP cord-002530-ao7kenbx 304 26 patient patient NN cord-002530-ao7kenbx 304 27 : : : cord-002530-ao7kenbx 304 28 role role NN cord-002530-ao7kenbx 304 29 of of IN cord-002530-ao7kenbx 304 30 cytomegalovirus cytomegalovirus JJ cord-002530-ao7kenbx 304 31 Interstitial interstitial JJ cord-002530-ao7kenbx 304 32 pneumonia pneumonia NN cord-002530-ao7kenbx 304 33 and and CC cord-002530-ao7kenbx 304 34 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 304 35 infection infection NN cord-002530-ao7kenbx 304 36 as as IN cord-002530-ao7kenbx 304 37 complications complication NNS cord-002530-ao7kenbx 304 38 of of IN cord-002530-ao7kenbx 304 39 human human JJ cord-002530-ao7kenbx 304 40 marrow marrow NN cord-002530-ao7kenbx 304 41 transplantation transplantation NN cord-002530-ao7kenbx 305 1 The the DT cord-002530-ao7kenbx 305 2 use use NN cord-002530-ao7kenbx 305 3 of of IN cord-002530-ao7kenbx 305 4 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 305 5 - - HYPH cord-002530-ao7kenbx 305 6 screened screen VBN cord-002530-ao7kenbx 305 7 blood blood NN cord-002530-ao7kenbx 305 8 in in IN cord-002530-ao7kenbx 305 9 neonates neonate NNS cord-002530-ao7kenbx 305 10 Progress Progress NNP cord-002530-ao7kenbx 305 11 on on IN cord-002530-ao7kenbx 305 12 human human JJ cord-002530-ao7kenbx 305 13 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 305 14 vaccines vaccine NNS cord-002530-ao7kenbx 305 15 for for IN cord-002530-ao7kenbx 305 16 prevention prevention NN cord-002530-ao7kenbx 305 17 of of IN cord-002530-ao7kenbx 305 18 congenital congenital JJ cord-002530-ao7kenbx 305 19 infection infection NN cord-002530-ao7kenbx 305 20 and and CC cord-002530-ao7kenbx 305 21 disease disease NN cord-002530-ao7kenbx 305 22 Analysis Analysis NNP cord-002530-ao7kenbx 305 23 of of IN cord-002530-ao7kenbx 305 24 splice splice NN cord-002530-ao7kenbx 305 25 variants variant NNS cord-002530-ao7kenbx 305 26 of of IN cord-002530-ao7kenbx 305 27 the the DT cord-002530-ao7kenbx 305 28 immediate immediate JJ cord-002530-ao7kenbx 305 29 - - HYPH cord-002530-ao7kenbx 305 30 early early JJ cord-002530-ao7kenbx 305 31 1 1 CD cord-002530-ao7kenbx 305 32 region region NN cord-002530-ao7kenbx 305 33 of of IN cord-002530-ao7kenbx 305 34 human human JJ cord-002530-ao7kenbx 305 35 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 306 1 The the DT cord-002530-ao7kenbx 306 2 human human JJ cord-002530-ao7kenbx 306 3 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 306 4 IE2 ie2 NN cord-002530-ao7kenbx 306 5 86-kilodalton 86-kilodalton CD cord-002530-ao7kenbx 306 6 protein protein NN cord-002530-ao7kenbx 306 7 interacts interact VBZ cord-002530-ao7kenbx 306 8 with with IN cord-002530-ao7kenbx 306 9 an an DT cord-002530-ao7kenbx 306 10 early early JJ cord-002530-ao7kenbx 306 11 gene gene NN cord-002530-ao7kenbx 306 12 promoter promoter NN cord-002530-ao7kenbx 306 13 via via IN cord-002530-ao7kenbx 306 14 site site NN cord-002530-ao7kenbx 306 15 - - HYPH cord-002530-ao7kenbx 306 16 specific specific JJ cord-002530-ao7kenbx 306 17 DNA dna NN cord-002530-ao7kenbx 306 18 binding binding NN cord-002530-ao7kenbx 306 19 and and CC cord-002530-ao7kenbx 306 20 protein protein NN cord-002530-ao7kenbx 306 21 - - HYPH cord-002530-ao7kenbx 306 22 protein protein NN cord-002530-ao7kenbx 306 23 associations association NNS cord-002530-ao7kenbx 307 1 Structural structural JJ cord-002530-ao7kenbx 307 2 analysis analysis NN cord-002530-ao7kenbx 307 3 of of IN cord-002530-ao7kenbx 307 4 the the DT cord-002530-ao7kenbx 307 5 major major JJ cord-002530-ao7kenbx 307 6 immediate immediate JJ cord-002530-ao7kenbx 307 7 early early JJ cord-002530-ao7kenbx 307 8 gene gene NN cord-002530-ao7kenbx 307 9 of of IN cord-002530-ao7kenbx 307 10 human human JJ cord-002530-ao7kenbx 307 11 cytomegalovirus cytomegalovirus NNP cord-002530-ao7kenbx 307 12 Human Human NNP cord-002530-ao7kenbx 307 13 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 307 14 persistence persistence NN cord-002530-ao7kenbx 307 15 Aspects aspect NNS cord-002530-ao7kenbx 307 16 of of IN cord-002530-ao7kenbx 307 17 human human JJ cord-002530-ao7kenbx 307 18 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 307 19 latency latency NN cord-002530-ao7kenbx 307 20 and and CC cord-002530-ao7kenbx 307 21 reactivation reactivation NN cord-002530-ao7kenbx 307 22 Human human JJ cord-002530-ao7kenbx 307 23 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 307 24 with with IN cord-002530-ao7kenbx 307 25 IE-2 IE-2 NNP cord-002530-ao7kenbx 307 26 ( ( -LRB- cord-002530-ao7kenbx 307 27 UL122 UL122 NNP cord-002530-ao7kenbx 307 28 ) ) -RRB- cord-002530-ao7kenbx 307 29 deleted delete VBN cord-002530-ao7kenbx 307 30 fails fail VBZ cord-002530-ao7kenbx 307 31 to to TO cord-002530-ao7kenbx 307 32 express express VB cord-002530-ao7kenbx 307 33 early early JJ cord-002530-ao7kenbx 307 34 lytic lytic JJ cord-002530-ao7kenbx 307 35 genes gene NNS cord-002530-ao7kenbx 307 36 Multiple multiple JJ cord-002530-ao7kenbx 307 37 spliced splice VBN cord-002530-ao7kenbx 307 38 and and CC cord-002530-ao7kenbx 307 39 unspliced unsplice VBN cord-002530-ao7kenbx 307 40 transcripts transcript NNS cord-002530-ao7kenbx 307 41 from from IN cord-002530-ao7kenbx 307 42 human human JJ cord-002530-ao7kenbx 307 43 cytomegalovirus cytomegalovirus JJ cord-002530-ao7kenbx 307 44 immediate immediate JJ cord-002530-ao7kenbx 307 45 - - HYPH cord-002530-ao7kenbx 307 46 early early JJ cord-002530-ao7kenbx 307 47 region region NN cord-002530-ao7kenbx 307 48 2 2 CD cord-002530-ao7kenbx 307 49 and and CC cord-002530-ao7kenbx 307 50 evidence evidence NN cord-002530-ao7kenbx 307 51 for for IN cord-002530-ao7kenbx 307 52 a a DT cord-002530-ao7kenbx 307 53 common common JJ cord-002530-ao7kenbx 307 54 initiation initiation NN cord-002530-ao7kenbx 307 55 site site NN cord-002530-ao7kenbx 307 56 within within IN cord-002530-ao7kenbx 307 57 immediate immediate JJ cord-002530-ao7kenbx 307 58 - - HYPH cord-002530-ao7kenbx 307 59 early early JJ cord-002530-ao7kenbx 307 60 region region NN cord-002530-ao7kenbx 307 61 1 1 CD cord-002530-ao7kenbx 307 62 Widespread Widespread NNP cord-002530-ao7kenbx 307 63 mRNA mRNA NNP cord-002530-ao7kenbx 307 64 polyadenylation polyadenylation NN cord-002530-ao7kenbx 307 65 events event NNS cord-002530-ao7kenbx 307 66 in in IN cord-002530-ao7kenbx 307 67 introns intron NNS cord-002530-ao7kenbx 308 1 indicate indicate VBP cord-002530-ao7kenbx 308 2 dynamic dynamic JJ cord-002530-ao7kenbx 308 3 interplay interplay NN cord-002530-ao7kenbx 308 4 between between IN cord-002530-ao7kenbx 308 5 polyadenylation polyadenylation NN cord-002530-ao7kenbx 308 6 and and CC cord-002530-ao7kenbx 308 7 splicing splice VBG cord-002530-ao7kenbx 308 8 Emerging Emerging NNP cord-002530-ao7kenbx 308 9 functions function NNS cord-002530-ao7kenbx 308 10 of of IN cord-002530-ao7kenbx 308 11 the the DT cord-002530-ao7kenbx 308 12 VCP VCP NNP cord-002530-ao7kenbx 308 13 / / SYM cord-002530-ao7kenbx 308 14 p97 p97 CD cord-002530-ao7kenbx 308 15 AAA AAA NNP cord-002530-ao7kenbx 308 16 - - HYPH cord-002530-ao7kenbx 308 17 ATPase ATPase NNP cord-002530-ao7kenbx 308 18 in in IN cord-002530-ao7kenbx 308 19 the the DT cord-002530-ao7kenbx 308 20 ubiquitin ubiquitin NN cord-002530-ao7kenbx 308 21 system system NN cord-002530-ao7kenbx 308 22 Role role NN cord-002530-ao7kenbx 308 23 of of IN cord-002530-ao7kenbx 308 24 Cdc48 Cdc48 NNP cord-002530-ao7kenbx 308 25 / / SYM cord-002530-ao7kenbx 308 26 p97 p97 CD cord-002530-ao7kenbx 308 27 as as IN cord-002530-ao7kenbx 308 28 a a DT cord-002530-ao7kenbx 308 29 SUMO SUMO NNP cord-002530-ao7kenbx 308 30 - - HYPH cord-002530-ao7kenbx 308 31 targeted target VBN cord-002530-ao7kenbx 308 32 segregase segregase NN cord-002530-ao7kenbx 308 33 curbing curb VBG cord-002530-ao7kenbx 308 34 Rad51-Rad52 rad51-rad52 NN cord-002530-ao7kenbx 308 35 interaction interaction NN cord-002530-ao7kenbx 308 36 p97 p97 CD cord-002530-ao7kenbx 308 37 complexes complex NNS cord-002530-ao7kenbx 308 38 as as IN cord-002530-ao7kenbx 308 39 signal signal NN cord-002530-ao7kenbx 308 40 integration integration NN cord-002530-ao7kenbx 308 41 hubs hub NNS cord-002530-ao7kenbx 308 42 The the DT cord-002530-ao7kenbx 308 43 VCP VCP NNP cord-002530-ao7kenbx 308 44 / / SYM cord-002530-ao7kenbx 308 45 p97 p97 CD cord-002530-ao7kenbx 308 46 system system NN cord-002530-ao7kenbx 308 47 at at IN cord-002530-ao7kenbx 308 48 a a DT cord-002530-ao7kenbx 308 49 glance glance NN cord-002530-ao7kenbx 308 50 : : : cord-002530-ao7kenbx 308 51 connecting connect VBG cord-002530-ao7kenbx 308 52 cellular cellular JJ cord-002530-ao7kenbx 308 53 function function NN cord-002530-ao7kenbx 308 54 to to IN cord-002530-ao7kenbx 308 55 disease disease NN cord-002530-ao7kenbx 308 56 pathogenesis pathogenesis NN cord-002530-ao7kenbx 309 1 Should Should MD cord-002530-ao7kenbx 309 2 I -PRON- PRP cord-002530-ao7kenbx 309 3 stay stay VB cord-002530-ao7kenbx 309 4 or or CC cord-002530-ao7kenbx 310 1 should should MD cord-002530-ao7kenbx 310 2 I -PRON- PRP cord-002530-ao7kenbx 310 3 go go VB cord-002530-ao7kenbx 310 4 : : : cord-002530-ao7kenbx 311 1 VCP VCP NNP cord-002530-ao7kenbx 311 2 / / SYM cord-002530-ao7kenbx 311 3 p97-mediated p97-mediated JJ cord-002530-ao7kenbx 311 4 chromatin chromatin NN cord-002530-ao7kenbx 311 5 extraction extraction NN cord-002530-ao7kenbx 311 6 in in IN cord-002530-ao7kenbx 311 7 the the DT cord-002530-ao7kenbx 311 8 DNA dna NN cord-002530-ao7kenbx 311 9 damage damage NN cord-002530-ao7kenbx 311 10 response response NN cord-002530-ao7kenbx 311 11 Cdc48 Cdc48 NNP cord-002530-ao7kenbx 311 12 / / SYM cord-002530-ao7kenbx 311 13 p97 p97 NN cord-002530-ao7kenbx 311 14 promotes promote VBZ cord-002530-ao7kenbx 311 15 reformation reformation NN cord-002530-ao7kenbx 311 16 of of IN cord-002530-ao7kenbx 311 17 the the DT cord-002530-ao7kenbx 311 18 nucleus nucleus NN cord-002530-ao7kenbx 311 19 by by IN cord-002530-ao7kenbx 311 20 extracting extract VBG cord-002530-ao7kenbx 311 21 the the DT cord-002530-ao7kenbx 311 22 kinase kinase NN cord-002530-ao7kenbx 311 23 Aurora Aurora NNP cord-002530-ao7kenbx 311 24 B B NNP cord-002530-ao7kenbx 311 25 from from IN cord-002530-ao7kenbx 311 26 chromatin chromatin JJ cord-002530-ao7kenbx 311 27 Valosin Valosin NNP cord-002530-ao7kenbx 311 28 - - HYPH cord-002530-ao7kenbx 311 29 containing contain VBG cord-002530-ao7kenbx 311 30 protein protein NN cord-002530-ao7kenbx 311 31 ( ( -LRB- cord-002530-ao7kenbx 311 32 VCP VCP NNP cord-002530-ao7kenbx 311 33 / / SYM cord-002530-ao7kenbx 311 34 p97 p97 CD cord-002530-ao7kenbx 311 35 ) ) -RRB- cord-002530-ao7kenbx 311 36 is be VBZ cord-002530-ao7kenbx 311 37 required require VBN cord-002530-ao7kenbx 311 38 for for IN cord-002530-ao7kenbx 311 39 poliovirus poliovirus NN cord-002530-ao7kenbx 311 40 replication replication NN cord-002530-ao7kenbx 311 41 and and CC cord-002530-ao7kenbx 311 42 is be VBZ cord-002530-ao7kenbx 311 43 involved involve VBN cord-002530-ao7kenbx 311 44 in in IN cord-002530-ao7kenbx 311 45 cellular cellular JJ cord-002530-ao7kenbx 311 46 protein protein NN cord-002530-ao7kenbx 311 47 secretion secretion NN cord-002530-ao7kenbx 311 48 pathway pathway NN cord-002530-ao7kenbx 311 49 in in IN cord-002530-ao7kenbx 311 50 poliovirus poliovirus NN cord-002530-ao7kenbx 311 51 infection infection NN cord-002530-ao7kenbx 311 52 Genome genome NN cord-002530-ao7kenbx 311 53 - - HYPH cord-002530-ao7kenbx 311 54 wide wide JJ cord-002530-ao7kenbx 311 55 RNAi RNAi NNS cord-002530-ao7kenbx 311 56 screen screen NN cord-002530-ao7kenbx 311 57 identifies identify VBZ cord-002530-ao7kenbx 311 58 SEC61A sec61a NN cord-002530-ao7kenbx 311 59 and and CC cord-002530-ao7kenbx 311 60 VCP VCP NNP cord-002530-ao7kenbx 311 61 as as IN cord-002530-ao7kenbx 311 62 conserved conserved JJ cord-002530-ao7kenbx 311 63 regulators regulator NNS cord-002530-ao7kenbx 311 64 of of IN cord-002530-ao7kenbx 311 65 Sindbis Sindbis NNP cord-002530-ao7kenbx 311 66 virus virus NN cord-002530-ao7kenbx 311 67 entry entry NN cord-002530-ao7kenbx 311 68 Genome Genome NNP cord-002530-ao7kenbx 311 69 - - HYPH cord-002530-ao7kenbx 311 70 Wide wide JJ cord-002530-ao7kenbx 311 71 Screen screen NN cord-002530-ao7kenbx 312 1 Reveals reveal VBZ cord-002530-ao7kenbx 312 2 Vcp Vcp NNP cord-002530-ao7kenbx 312 3 Requirement Requirement NNP cord-002530-ao7kenbx 312 4 for for IN cord-002530-ao7kenbx 312 5 Coronavirus Coronavirus NNP cord-002530-ao7kenbx 312 6 Exit Exit NNP cord-002530-ao7kenbx 312 7 from from IN cord-002530-ao7kenbx 312 8 Endosomes Endosomes NNP cord-002530-ao7kenbx 313 1 The the DT cord-002530-ao7kenbx 313 2 AAA AAA NNP cord-002530-ao7kenbx 313 3 ATPase ATPase NNP cord-002530-ao7kenbx 313 4 Cdc48 Cdc48 NNP cord-002530-ao7kenbx 313 5 / / SYM cord-002530-ao7kenbx 313 6 p97 p97 CD cord-002530-ao7kenbx 313 7 and and CC cord-002530-ao7kenbx 313 8 its -PRON- PRP$ cord-002530-ao7kenbx 313 9 partners partner NNS cord-002530-ao7kenbx 313 10 transport transport VBP cord-002530-ao7kenbx 313 11 proteins protein NNS cord-002530-ao7kenbx 313 12 from from IN cord-002530-ao7kenbx 313 13 the the DT cord-002530-ao7kenbx 313 14 ER ER NNP cord-002530-ao7kenbx 313 15 into into IN cord-002530-ao7kenbx 313 16 the the DT cord-002530-ao7kenbx 313 17 cytosol cytosol NN cord-002530-ao7kenbx 314 1 Systematic systematic JJ cord-002530-ao7kenbx 314 2 microRNA microRNA NNP cord-002530-ao7kenbx 314 3 analysis analysis NN cord-002530-ao7kenbx 314 4 identifies identify VBZ cord-002530-ao7kenbx 314 5 ATP6V0C ATP6V0C VBN cord-002530-ao7kenbx 314 6 as as IN cord-002530-ao7kenbx 314 7 an an DT cord-002530-ao7kenbx 314 8 essential essential JJ cord-002530-ao7kenbx 314 9 host host NN cord-002530-ao7kenbx 314 10 factor factor NN cord-002530-ao7kenbx 314 11 for for IN cord-002530-ao7kenbx 314 12 human human JJ cord-002530-ao7kenbx 314 13 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 314 14 replication replication NN cord-002530-ao7kenbx 314 15 V v NN cord-002530-ao7kenbx 314 16 for for IN cord-002530-ao7kenbx 314 17 victory victory NN cord-002530-ao7kenbx 314 18 - - : cord-002530-ao7kenbx 314 19 a a DT cord-002530-ao7kenbx 314 20 V1-ATPase v1-atpase NN cord-002530-ao7kenbx 314 21 structure structure NN cord-002530-ao7kenbx 314 22 revealed reveal VBD cord-002530-ao7kenbx 314 23 Proteasome Proteasome NNP cord-002530-ao7kenbx 314 24 subunits subunit VBZ cord-002530-ao7kenbx 314 25 relocalize relocalize NNS cord-002530-ao7kenbx 314 26 during during IN cord-002530-ao7kenbx 314 27 human human JJ cord-002530-ao7kenbx 314 28 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 314 29 infection infection NN cord-002530-ao7kenbx 314 30 , , , cord-002530-ao7kenbx 314 31 and and CC cord-002530-ao7kenbx 314 32 proteasome proteasome NN cord-002530-ao7kenbx 314 33 activity activity NN cord-002530-ao7kenbx 314 34 is be VBZ cord-002530-ao7kenbx 314 35 necessary necessary JJ cord-002530-ao7kenbx 314 36 for for IN cord-002530-ao7kenbx 314 37 efficient efficient JJ cord-002530-ao7kenbx 314 38 viral viral JJ cord-002530-ao7kenbx 314 39 gene gene NN cord-002530-ao7kenbx 314 40 transcription transcription NN cord-002530-ao7kenbx 314 41 Identification identification NN cord-002530-ao7kenbx 314 42 of of IN cord-002530-ao7kenbx 314 43 binding bind VBG cord-002530-ao7kenbx 314 44 sites site NNS cord-002530-ao7kenbx 314 45 for for IN cord-002530-ao7kenbx 314 46 the the DT cord-002530-ao7kenbx 314 47 86-kilodalton 86-kilodalton CD cord-002530-ao7kenbx 314 48 IE2 ie2 NN cord-002530-ao7kenbx 314 49 protein protein NN cord-002530-ao7kenbx 314 50 of of IN cord-002530-ao7kenbx 314 51 human human JJ cord-002530-ao7kenbx 314 52 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 314 53 within within IN cord-002530-ao7kenbx 314 54 an an DT cord-002530-ao7kenbx 314 55 IE2-responsive ie2-responsive JJ cord-002530-ao7kenbx 314 56 viral viral JJ cord-002530-ao7kenbx 314 57 early early JJ cord-002530-ao7kenbx 314 58 promoter promoter NN cord-002530-ao7kenbx 314 59 Separate separate JJ cord-002530-ao7kenbx 314 60 DNA dna NN cord-002530-ao7kenbx 314 61 elements element NNS cord-002530-ao7kenbx 314 62 containing contain VBG cord-002530-ao7kenbx 314 63 ATF ATF NNP cord-002530-ao7kenbx 314 64 / / SYM cord-002530-ao7kenbx 314 65 CREB CREB NNP cord-002530-ao7kenbx 314 66 and and CC cord-002530-ao7kenbx 314 67 IE86 IE86 NNP cord-002530-ao7kenbx 314 68 binding bind VBG cord-002530-ao7kenbx 314 69 sites site NNS cord-002530-ao7kenbx 314 70 differentially differentially RB cord-002530-ao7kenbx 314 71 regulate regulate VBP cord-002530-ao7kenbx 314 72 the the DT cord-002530-ao7kenbx 314 73 human human JJ cord-002530-ao7kenbx 314 74 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 314 75 UL112 UL112 NNP cord-002530-ao7kenbx 314 76 - - HYPH cord-002530-ao7kenbx 314 77 113 113 CD cord-002530-ao7kenbx 314 78 promoter promoter NN cord-002530-ao7kenbx 314 79 at at IN cord-002530-ao7kenbx 314 80 early early JJ cord-002530-ao7kenbx 314 81 and and CC cord-002530-ao7kenbx 314 82 late late JJ cord-002530-ao7kenbx 314 83 times time NNS cord-002530-ao7kenbx 314 84 in in IN cord-002530-ao7kenbx 314 85 the the DT cord-002530-ao7kenbx 314 86 infection infection NN cord-002530-ao7kenbx 314 87 Inhibition Inhibition NNP cord-002530-ao7kenbx 314 88 of of IN cord-002530-ao7kenbx 314 89 human human JJ cord-002530-ao7kenbx 314 90 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 314 91 immediate immediate JJ cord-002530-ao7kenbx 314 92 - - HYPH cord-002530-ao7kenbx 314 93 early early JJ cord-002530-ao7kenbx 314 94 gene gene NN cord-002530-ao7kenbx 314 95 expression expression NN cord-002530-ao7kenbx 314 96 by by IN cord-002530-ao7kenbx 314 97 cyclin cyclin NN cord-002530-ao7kenbx 314 98 A2-dependent a2-dependent NN cord-002530-ao7kenbx 314 99 kinase kinase NN cord-002530-ao7kenbx 314 100 activity activity NN cord-002530-ao7kenbx 315 1 Cyclin Cyclin NNP cord-002530-ao7kenbx 315 2 - - HYPH cord-002530-ao7kenbx 315 3 dependent dependent JJ cord-002530-ao7kenbx 315 4 kinase kinase NN cord-002530-ao7kenbx 315 5 activity activity NN cord-002530-ao7kenbx 315 6 is be VBZ cord-002530-ao7kenbx 315 7 required require VBN cord-002530-ao7kenbx 315 8 at at IN cord-002530-ao7kenbx 315 9 early early JJ cord-002530-ao7kenbx 315 10 times time NNS cord-002530-ao7kenbx 315 11 for for IN cord-002530-ao7kenbx 315 12 accurate accurate JJ cord-002530-ao7kenbx 315 13 processing processing NN cord-002530-ao7kenbx 315 14 and and CC cord-002530-ao7kenbx 315 15 accumulation accumulation NN cord-002530-ao7kenbx 315 16 of of IN cord-002530-ao7kenbx 315 17 the the DT cord-002530-ao7kenbx 315 18 human human JJ cord-002530-ao7kenbx 315 19 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 315 20 UL122 UL122 NNP cord-002530-ao7kenbx 315 21 - - HYPH cord-002530-ao7kenbx 315 22 123 123 CD cord-002530-ao7kenbx 315 23 and and CC cord-002530-ao7kenbx 315 24 UL37 UL37 NNP cord-002530-ao7kenbx 315 25 immediate immediate JJ cord-002530-ao7kenbx 315 26 - - HYPH cord-002530-ao7kenbx 315 27 early early JJ cord-002530-ao7kenbx 315 28 transcripts transcript NNS cord-002530-ao7kenbx 315 29 and and CC cord-002530-ao7kenbx 315 30 at at IN cord-002530-ao7kenbx 315 31 later later JJ cord-002530-ao7kenbx 315 32 times time NNS cord-002530-ao7kenbx 315 33 for for IN cord-002530-ao7kenbx 315 34 virus virus NN cord-002530-ao7kenbx 315 35 production production NN cord-002530-ao7kenbx 315 36 We -PRON- PRP cord-002530-ao7kenbx 315 37 would would MD cord-002530-ao7kenbx 315 38 like like VB cord-002530-ao7kenbx 315 39 to to TO cord-002530-ao7kenbx 315 40 acknowledge acknowledge VB cord-002530-ao7kenbx 315 41 Paul Paul NNP cord-002530-ao7kenbx 315 42 Digard Digard NNP cord-002530-ao7kenbx 315 43 , , , cord-002530-ao7kenbx 315 44 Jay Jay NNP cord-002530-ao7kenbx 315 45 Nelson Nelson NNP cord-002530-ao7kenbx 315 46 and and CC cord-002530-ao7kenbx 315 47 Christopher Christopher NNP cord-002530-ao7kenbx 315 48 Snyder Snyder NNP cord-002530-ao7kenbx 315 49 for for IN cord-002530-ao7kenbx 315 50 critical critical JJ cord-002530-ao7kenbx 315 51 review review NN cord-002530-ao7kenbx 315 52 of of IN cord-002530-ao7kenbx 315 53 the the DT cord-002530-ao7kenbx 315 54 manuscript manuscript NN cord-002530-ao7kenbx 315 55 and and CC cord-002530-ao7kenbx 315 56 Steve Steve NNP cord-002530-ao7kenbx 315 57 West West NNP cord-002530-ao7kenbx 315 58 and and CC cord-002530-ao7kenbx 315 59 Greg Greg NNP cord-002530-ao7kenbx 315 60 Kudla Kudla NNP cord-002530-ao7kenbx 315 61 for for IN cord-002530-ao7kenbx 315 62 helpful helpful JJ cord-002530-ao7kenbx 315 63 discussion discussion NN cord-002530-ao7kenbx 315 64 . . . cord-002530-ao7kenbx 316 1 RNAseq RNAseq NNP cord-002530-ao7kenbx 316 2 was be VBD cord-002530-ao7kenbx 316 3 performed perform VBN cord-002530-ao7kenbx 316 4 by by IN cord-002530-ao7kenbx 316 5 Edinburgh Edinburgh NNP cord-002530-ao7kenbx 316 6 Genomics Genomics NNP cord-002530-ao7kenbx 316 7 , , , cord-002530-ao7kenbx 316 8 The the DT cord-002530-ao7kenbx 316 9 University University NNP cord-002530-ao7kenbx 316 10 of of IN cord-002530-ao7kenbx 316 11 Edinburgh Edinburgh NNP cord-002530-ao7kenbx 316 12 . . . cord-002530-ao7kenbx 317 1 Ahn Ahn NNP cord-002530-ao7kenbx 317 2 JH JH NNP cord-002530-ao7kenbx 317 3 , , , cord-002530-ao7kenbx 317 4 Jang Jang NNP cord-002530-ao7kenbx 317 5 WJ WJ NNP cord-002530-ao7kenbx 317 6 , , , cord-002530-ao7kenbx 317 7 Hayward Hayward NNP cord-002530-ao7kenbx 317 8 GS GS NNP cord-002530-ao7kenbx 317 9 ( ( -LRB- cord-002530-ao7kenbx 317 10 1999 1999 CD cord-002530-ao7kenbx 317 11 ) ) -RRB- cord-002530-ao7kenbx 318 1 The the DT cord-002530-ao7kenbx 318 2 human human JJ cord-002530-ao7kenbx 318 3 cytomegalovirus cytomegalovirus NN cord-002530-ao7kenbx 318 4 IE2 ie2 NN cord-002530-ao7kenbx 318 5 and and CC cord-002530-ao7kenbx 318 6 UL112 UL112 NNP cord-002530-ao7kenbx 318 7 - - HYPH cord-002530-ao7kenbx 318 8 113 113 CD cord-002530-ao7kenbx 318 9 proteins protein NNS cord-002530-ao7kenbx 318 10 accumulate accumulate VBP cord-002530-ao7kenbx 318 11 in in IN cord-002530-ao7kenbx 318 12 viral viral JJ cord-002530-ao7kenbx 318 13 DNA dna NN cord-002530-ao7kenbx 318 14 replication replication NN cord-002530-ao7kenbx 318 15 compartments compartment NNS cord-002530-ao7kenbx 318 16 that that WDT cord-002530-ao7kenbx 318 17 initiate initiate VBP cord-002530-ao7kenbx 318 18 from from IN cord-002530-ao7kenbx 318 19 the the DT cord-002530-ao7kenbx 318 20 periphery periphery NN cord-002530-ao7kenbx 318 21 of of IN cord-002530-ao7kenbx 318 22 promyelocytic promyelocytic JJ cord-002530-ao7kenbx 318 23 leukemia leukemia NN cord-002530-ao7kenbx 318 24 protein protein NN cord-002530-ao7kenbx 318 25 - - HYPH cord-002530-ao7kenbx 318 26 associated associate VBN cord-002530-ao7kenbx 318 27 nuclear nuclear JJ cord-002530-ao7kenbx 318 28 bodies body NNS cord-002530-ao7kenbx 318 29 ( ( -LRB- cord-002530-ao7kenbx 318 30 PODs pod NNS cord-002530-ao7kenbx 318 31 or or CC cord-002530-ao7kenbx 318 32 ND10 ND10 NNP cord-002530-ao7kenbx 318 33 _SP