id sid tid token lemma pos cord-008426-ktn8c0zx 1 1 key key NN cord-008426-ktn8c0zx 1 2 : : : cord-008426-ktn8c0zx 1 3 cord-008426-ktn8c0zx cord-008426-ktn8c0zx NNS cord-008426-ktn8c0zx 1 4 authors author NNS cord-008426-ktn8c0zx 1 5 : : : cord-008426-ktn8c0zx 1 6 Othman Othman NNP cord-008426-ktn8c0zx 1 7 , , , cord-008426-ktn8c0zx 1 8 Yasmin Yasmin NNP cord-008426-ktn8c0zx 1 9 ; ; : cord-008426-ktn8c0zx 1 10 Hull Hull NNP cord-008426-ktn8c0zx 1 11 , , , cord-008426-ktn8c0zx 1 12 Roger Roger NNP cord-008426-ktn8c0zx 1 13 title title NN cord-008426-ktn8c0zx 1 14 : : : cord-008426-ktn8c0zx 1 15 Nucleotide nucleotide JJ cord-008426-ktn8c0zx 1 16 sequence sequence NN cord-008426-ktn8c0zx 1 17 of of IN cord-008426-ktn8c0zx 1 18 the the DT cord-008426-ktn8c0zx 1 19 bean bean NN cord-008426-ktn8c0zx 1 20 strain strain NN cord-008426-ktn8c0zx 1 21 of of IN cord-008426-ktn8c0zx 1 22 southern southern JJ cord-008426-ktn8c0zx 1 23 bean bean NN cord-008426-ktn8c0zx 1 24 mosaic mosaic NNP cord-008426-ktn8c0zx 1 25 virus virus NN cord-008426-ktn8c0zx 1 26 ( ( -LRB- cord-008426-ktn8c0zx 1 27 ) ) -RRB- cord-008426-ktn8c0zx 1 28 date date NN cord-008426-ktn8c0zx 1 29 : : : cord-008426-ktn8c0zx 1 30 1995 1995 CD cord-008426-ktn8c0zx 1 31 - - HYPH cord-008426-ktn8c0zx 1 32 01 01 CD cord-008426-ktn8c0zx 1 33 - - SYM cord-008426-ktn8c0zx 1 34 10 10 CD cord-008426-ktn8c0zx 1 35 journal journal NN cord-008426-ktn8c0zx 1 36 : : : cord-008426-ktn8c0zx 1 37 Virology Virology NNP cord-008426-ktn8c0zx 1 38 DOI DOI NNP cord-008426-ktn8c0zx 1 39 : : : cord-008426-ktn8c0zx 1 40 10.1016 10.1016 CD cord-008426-ktn8c0zx 1 41 / / SYM cord-008426-ktn8c0zx 1 42 s0042 s0042 NNP cord-008426-ktn8c0zx 1 43 - - HYPH cord-008426-ktn8c0zx 1 44 6822(95)80044 6822(95)80044 NNP cord-008426-ktn8c0zx 1 45 - - HYPH cord-008426-ktn8c0zx 1 46 1 1 CD cord-008426-ktn8c0zx 1 47 sha sha NNP cord-008426-ktn8c0zx 1 48 : : : cord-008426-ktn8c0zx 1 49 40aa4c52bdc1f1f93c376d57417192ccf5d6aaa8 40aa4c52bdc1f1f93c376d57417192ccf5d6aaa8 CD cord-008426-ktn8c0zx 1 50 doc_id doc_id CD cord-008426-ktn8c0zx 1 51 : : : cord-008426-ktn8c0zx 1 52 8426 8426 CD cord-008426-ktn8c0zx 1 53 cord_uid cord_uid NNS cord-008426-ktn8c0zx 1 54 : : : cord-008426-ktn8c0zx 1 55 ktn8c0zx ktn8c0zx NNP cord-008426-ktn8c0zx 2 1 The the DT cord-008426-ktn8c0zx 2 2 genome genome NN cord-008426-ktn8c0zx 2 3 of of IN cord-008426-ktn8c0zx 2 4 the the DT cord-008426-ktn8c0zx 2 5 bean bean NN cord-008426-ktn8c0zx 2 6 strain strain NN cord-008426-ktn8c0zx 2 7 of of IN cord-008426-ktn8c0zx 2 8 southern southern JJ cord-008426-ktn8c0zx 2 9 bean bean NN cord-008426-ktn8c0zx 2 10 mosaic mosaic NNP cord-008426-ktn8c0zx 2 11 virus virus NN cord-008426-ktn8c0zx 2 12 ( ( -LRB- cord-008426-ktn8c0zx 2 13 SBMV SBMV NNP cord-008426-ktn8c0zx 2 14 - - HYPH cord-008426-ktn8c0zx 2 15 B B NNP cord-008426-ktn8c0zx 2 16 ) ) -RRB- cord-008426-ktn8c0zx 2 17 comprises comprise VBZ cord-008426-ktn8c0zx 2 18 4109 4109 CD cord-008426-ktn8c0zx 2 19 nucleotides nucleotide NNS cord-008426-ktn8c0zx 2 20 and and CC cord-008426-ktn8c0zx 2 21 thus thus RB cord-008426-ktn8c0zx 2 22 is be VBZ cord-008426-ktn8c0zx 2 23 slightlyshorter slightlyshorter JJ cord-008426-ktn8c0zx 2 24 than than IN cord-008426-ktn8c0zx 2 25 those those DT cord-008426-ktn8c0zx 2 26 of of IN cord-008426-ktn8c0zx 2 27 the the DT cord-008426-ktn8c0zx 2 28 two two CD cord-008426-ktn8c0zx 2 29 other other JJ cord-008426-ktn8c0zx 2 30 sequenced sequence VBN cord-008426-ktn8c0zx 2 31 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 2 32 ( ( -LRB- cord-008426-ktn8c0zx 2 33 southern southern JJ cord-008426-ktn8c0zx 2 34 bean bean NNP cord-008426-ktn8c0zx 2 35 mosaic mosaic NNP cord-008426-ktn8c0zx 2 36 virus virus NN cord-008426-ktn8c0zx 2 37 , , , cord-008426-ktn8c0zx 2 38 cowpea cowpea NNP cord-008426-ktn8c0zx 2 39 strain strain NN cord-008426-ktn8c0zx 2 40 ( ( -LRB- cord-008426-ktn8c0zx 2 41 SBMV SBMV NNP cord-008426-ktn8c0zx 2 42 - - HYPH cord-008426-ktn8c0zx 2 43 C C NNP cord-008426-ktn8c0zx 2 44 ) ) -RRB- cord-008426-ktn8c0zx 2 45 and and CC cord-008426-ktn8c0zx 2 46 rice rice NNP cord-008426-ktn8c0zx 2 47 yellow yellow NNP cord-008426-ktn8c0zx 2 48 mottle mottle NN cord-008426-ktn8c0zx 2 49 virus virus NN cord-008426-ktn8c0zx 2 50 ( ( -LRB- cord-008426-ktn8c0zx 2 51 RYMV RYMV NNP cord-008426-ktn8c0zx 2 52 ) ) -RRB- cord-008426-ktn8c0zx 2 53 ) ) -RRB- cord-008426-ktn8c0zx 2 54 . . . cord-008426-ktn8c0zx 3 1 SBMV SBMV NNP cord-008426-ktn8c0zx 3 2 - - HYPH cord-008426-ktn8c0zx 3 3 B B NNP cord-008426-ktn8c0zx 3 4 has have VBZ cord-008426-ktn8c0zx 3 5 an an DT cord-008426-ktn8c0zx 3 6 overall overall JJ cord-008426-ktn8c0zx 3 7 sequence sequence NN cord-008426-ktn8c0zx 3 8 similarity similarity NN cord-008426-ktn8c0zx 3 9 with with IN cord-008426-ktn8c0zx 3 10 SBMV SBMV NNP cord-008426-ktn8c0zx 3 11 - - HYPH cord-008426-ktn8c0zx 3 12 C C NNP cord-008426-ktn8c0zx 3 13 of of IN cord-008426-ktn8c0zx 3 14 55 55 CD cord-008426-ktn8c0zx 3 15 % % NN cord-008426-ktn8c0zx 3 16 and and CC cord-008426-ktn8c0zx 3 17 with with IN cord-008426-ktn8c0zx 3 18 RYMV RYMV NNP cord-008426-ktn8c0zx 3 19 of of IN cord-008426-ktn8c0zx 3 20 45 45 CD cord-008426-ktn8c0zx 3 21 % % NN cord-008426-ktn8c0zx 3 22 . . . cord-008426-ktn8c0zx 4 1 Three three CD cord-008426-ktn8c0zx 4 2 potential potential JJ cord-008426-ktn8c0zx 4 3 open open JJ cord-008426-ktn8c0zx 4 4 reading reading NN cord-008426-ktn8c0zx 4 5 frames frame NNS cord-008426-ktn8c0zx 4 6 ( ( -LRB- cord-008426-ktn8c0zx 4 7 ORFs ORFs NNP cord-008426-ktn8c0zx 4 8 ) ) -RRB- cord-008426-ktn8c0zx 4 9 were be VBD cord-008426-ktn8c0zx 4 10 recognized recognize VBN cord-008426-ktn8c0zx 4 11 in in IN cord-008426-ktn8c0zx 4 12 SBMV SBMV NNP cord-008426-ktn8c0zx 4 13 - - HYPH cord-008426-ktn8c0zx 4 14 B B NNP cord-008426-ktn8c0zx 4 15 which which WDT cord-008426-ktn8c0zx 4 16 were be VBD cord-008426-ktn8c0zx 4 17 in in IN cord-008426-ktn8c0zx 4 18 similar similar JJ cord-008426-ktn8c0zx 4 19 positions position NNS cord-008426-ktn8c0zx 4 20 in in IN cord-008426-ktn8c0zx 4 21 the the DT cord-008426-ktn8c0zx 4 22 genomes genome NNS cord-008426-ktn8c0zx 4 23 of of IN cord-008426-ktn8c0zx 4 24 SBMV SBMV NNP cord-008426-ktn8c0zx 4 25 - - HYPH cord-008426-ktn8c0zx 4 26 C C NNP cord-008426-ktn8c0zx 4 27 and and CC cord-008426-ktn8c0zx 4 28 RYMV RYMV NNP cord-008426-ktn8c0zx 4 29 . . . cord-008426-ktn8c0zx 5 1 However however RB cord-008426-ktn8c0zx 5 2 , , , cord-008426-ktn8c0zx 5 3 there there EX cord-008426-ktn8c0zx 5 4 was be VBD cord-008426-ktn8c0zx 5 5 no no DT cord-008426-ktn8c0zx 5 6 analog analog NN cord-008426-ktn8c0zx 5 7 of of IN cord-008426-ktn8c0zx 5 8 SBMV SBMV NNP cord-008426-ktn8c0zx 5 9 - - HYPH cord-008426-ktn8c0zx 5 10 C C NNP cord-008426-ktn8c0zx 5 11 and and CC cord-008426-ktn8c0zx 5 12 RYMV RYMV NNP cord-008426-ktn8c0zx 5 13 ORF ORF NNP cord-008426-ktn8c0zx 5 14 3 3 CD cord-008426-ktn8c0zx 5 15 . . . cord-008426-ktn8c0zx 6 1 From from IN cord-008426-ktn8c0zx 6 2 a a DT cord-008426-ktn8c0zx 6 3 comparison comparison NN cord-008426-ktn8c0zx 6 4 of of IN cord-008426-ktn8c0zx 6 5 the the DT cord-008426-ktn8c0zx 6 6 predicted predict VBN cord-008426-ktn8c0zx 6 7 sequences sequence NNS cord-008426-ktn8c0zx 6 8 of of IN cord-008426-ktn8c0zx 6 9 the the DT cord-008426-ktn8c0zx 6 10 ORFs orfs NN cord-008426-ktn8c0zx 6 11 of of IN cord-008426-ktn8c0zx 6 12 these these DT cord-008426-ktn8c0zx 6 13 three three CD cord-008426-ktn8c0zx 6 14 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 6 15 and and CC cord-008426-ktn8c0zx 6 16 of of IN cord-008426-ktn8c0zx 6 17 the the DT cord-008426-ktn8c0zx 6 18 noncoding noncoding JJ cord-008426-ktn8c0zx 6 19 regions region NNS cord-008426-ktn8c0zx 6 20 , , , cord-008426-ktn8c0zx 6 21 it -PRON- PRP cord-008426-ktn8c0zx 6 22 is be VBZ cord-008426-ktn8c0zx 6 23 suggested suggest VBN cord-008426-ktn8c0zx 6 24 that that IN cord-008426-ktn8c0zx 6 25 the the DT cord-008426-ktn8c0zx 6 26 two two CD cord-008426-ktn8c0zx 6 27 SBMV SBMV NNP cord-008426-ktn8c0zx 6 28 strains strain NNS cord-008426-ktn8c0zx 6 29 differ differ VBP cord-008426-ktn8c0zx 6 30 from from IN cord-008426-ktn8c0zx 6 31 one one CD cord-008426-ktn8c0zx 6 32 another another DT cord-008426-ktn8c0zx 6 33 as as RB cord-008426-ktn8c0zx 6 34 much much RB cord-008426-ktn8c0zx 6 35 as as IN cord-008426-ktn8c0zx 6 36 they -PRON- PRP cord-008426-ktn8c0zx 6 37 do do VBP cord-008426-ktn8c0zx 6 38 from from IN cord-008426-ktn8c0zx 6 39 RYMV RYMV NNP cord-008426-ktn8c0zx 6 40 and and CC cord-008426-ktn8c0zx 6 41 that that IN cord-008426-ktn8c0zx 6 42 they -PRON- PRP cord-008426-ktn8c0zx 6 43 should should MD cord-008426-ktn8c0zx 6 44 be be VB cord-008426-ktn8c0zx 6 45 considered consider VBN cord-008426-ktn8c0zx 6 46 as as IN cord-008426-ktn8c0zx 6 47 different different JJ cord-008426-ktn8c0zx 6 48 viruses virus NNS cord-008426-ktn8c0zx 6 49 . . . cord-008426-ktn8c0zx 7 1 Southern southern JJ cord-008426-ktn8c0zx 7 2 bean bean NN cord-008426-ktn8c0zx 7 3 mosaic mosaic NN cord-008426-ktn8c0zx 7 4 virus virus NN cord-008426-ktn8c0zx 7 5 ( ( -LRB- cord-008426-ktn8c0zx 7 6 SBMV SBMV NNP cord-008426-ktn8c0zx 7 7 ) ) -RRB- cord-008426-ktn8c0zx 7 8 is be VBZ cord-008426-ktn8c0zx 7 9 the the DT cord-008426-ktn8c0zx 7 10 type type NN cord-008426-ktn8c0zx 7 11 member member NN cord-008426-ktn8c0zx 7 12 of of IN cord-008426-ktn8c0zx 7 13 the the DT cord-008426-ktn8c0zx 7 14 sobemovirus sobemovirus NNP cord-008426-ktn8c0zx 7 15 group group NNP cord-008426-ktn8c0zx 7 16 of of IN cord-008426-ktn8c0zx 7 17 small small JJ cord-008426-ktn8c0zx 7 18 icosahedral icosahedral JJ cord-008426-ktn8c0zx 7 19 positive positive JJ cord-008426-ktn8c0zx 7 20 - - HYPH cord-008426-ktn8c0zx 7 21 strand strand NN cord-008426-ktn8c0zx 7 22 RNA RNA NNP cord-008426-ktn8c0zx 7 23 viruses virus NNS cord-008426-ktn8c0zx 7 24 ( ( -LRB- cord-008426-ktn8c0zx 7 25 for for IN cord-008426-ktn8c0zx 7 26 reviews review NNS cord-008426-ktn8c0zx 7 27 see see VBP cord-008426-ktn8c0zx 7 28 Sehgal Sehgal NNP cord-008426-ktn8c0zx 7 29 , , , cord-008426-ktn8c0zx 7 30 1981 1981 CD cord-008426-ktn8c0zx 7 31 ; ; : cord-008426-ktn8c0zx 7 32 Tremaine Tremaine NNP cord-008426-ktn8c0zx 7 33 and and CC cord-008426-ktn8c0zx 7 34 Hamilton Hamilton NNP cord-008426-ktn8c0zx 7 35 , , , cord-008426-ktn8c0zx 7 36 1983 1983 CD cord-008426-ktn8c0zx 7 37 ; ; : cord-008426-ktn8c0zx 7 38 Hull Hull NNP cord-008426-ktn8c0zx 7 39 , , , cord-008426-ktn8c0zx 7 40 1988 1988 CD cord-008426-ktn8c0zx 7 41 ) ) -RRB- cord-008426-ktn8c0zx 7 42 . . . cord-008426-ktn8c0zx 8 1 Four four CD cord-008426-ktn8c0zx 8 2 major major JJ cord-008426-ktn8c0zx 8 3 strains strain NNS cord-008426-ktn8c0zx 8 4 of of IN cord-008426-ktn8c0zx 8 5 SBMV SBMV NNP cord-008426-ktn8c0zx 8 6 are be VBP cord-008426-ktn8c0zx 8 7 recognized recognize VBN cord-008426-ktn8c0zx 8 8 which which WDT cord-008426-ktn8c0zx 8 9 are be VBP cord-008426-ktn8c0zx 8 10 serologically serologically RB cord-008426-ktn8c0zx 8 11 related relate VBN cord-008426-ktn8c0zx 8 12 ( ( -LRB- cord-008426-ktn8c0zx 9 1 Grogan Grogan NNP cord-008426-ktn8c0zx 9 2 and and CC cord-008426-ktn8c0zx 9 3 Kimble Kimble NNP cord-008426-ktn8c0zx 9 4 , , , cord-008426-ktn8c0zx 9 5 1964 1964 CD cord-008426-ktn8c0zx 9 6 ) ) -RRB- cord-008426-ktn8c0zx 9 7 . . . cord-008426-ktn8c0zx 10 1 The the DT cord-008426-ktn8c0zx 10 2 type type NN cord-008426-ktn8c0zx 10 3 strain strain NN cord-008426-ktn8c0zx 10 4 ( ( -LRB- cord-008426-ktn8c0zx 10 5 bean bean NN cord-008426-ktn8c0zx 10 6 strain strain NN cord-008426-ktn8c0zx 10 7 ) ) -RRB- cord-008426-ktn8c0zx 10 8 , , , cord-008426-ktn8c0zx 10 9 SBMV SBMV NNP cord-008426-ktn8c0zx 10 10 - - HYPH cord-008426-ktn8c0zx 10 11 B B NNP cord-008426-ktn8c0zx 10 12 , , , cord-008426-ktn8c0zx 10 13 infects infect VBZ cord-008426-ktn8c0zx 10 14 several several JJ cord-008426-ktn8c0zx 10 15 Phaseolus Phaseolus NNP cord-008426-ktn8c0zx 10 16 spp spp NNS cord-008426-ktn8c0zx 10 17 . . . cord-008426-ktn8c0zx 11 1 , , , cord-008426-ktn8c0zx 11 2 including include VBG cord-008426-ktn8c0zx 11 3 many many JJ cord-008426-ktn8c0zx 11 4 cultivars cultivar NNS cord-008426-ktn8c0zx 11 5 of of IN cord-008426-ktn8c0zx 11 6 Phaseo Phaseo NNP cord-008426-ktn8c0zx 11 7 / / , cord-008426-ktn8c0zx 11 8 us us NNP cord-008426-ktn8c0zx 11 9 vulgaris vulgaris NN cord-008426-ktn8c0zx 11 10 , , , cord-008426-ktn8c0zx 11 11 but but CC cord-008426-ktn8c0zx 11 12 does do VBZ cord-008426-ktn8c0zx 11 13 not not RB cord-008426-ktn8c0zx 11 14 systemically systemically RB cord-008426-ktn8c0zx 11 15 infect infect VB cord-008426-ktn8c0zx 11 16 cowpeas cowpeas NNP cord-008426-ktn8c0zx 11 17 ( ( -LRB- cord-008426-ktn8c0zx 11 18 Vigna Vigna NNP cord-008426-ktn8c0zx 11 19 unguiculata unguiculata NNP cord-008426-ktn8c0zx 11 20 ) ) -RRB- cord-008426-ktn8c0zx 11 21 , , , cord-008426-ktn8c0zx 11 22 whereas whereas IN cord-008426-ktn8c0zx 11 23 the the DT cord-008426-ktn8c0zx 11 24 cowpea cowpea NN cord-008426-ktn8c0zx 11 25 strain strain NN cord-008426-ktn8c0zx 11 26 ( ( -LRB- cord-008426-ktn8c0zx 11 27 SBMV SBMV NNP cord-008426-ktn8c0zx 11 28 - - HYPH cord-008426-ktn8c0zx 11 29 C C NNP cord-008426-ktn8c0zx 11 30 ) ) -RRB- cord-008426-ktn8c0zx 11 31 infects infect VBZ cord-008426-ktn8c0zx 11 32 V. V. NNP cord-008426-ktn8c0zx 11 33 unguicu unguicu NNP cord-008426-ktn8c0zx 11 34 / / SYM cord-008426-ktn8c0zx 11 35 ata ata NNP cord-008426-ktn8c0zx 11 36 and and CC cord-008426-ktn8c0zx 11 37 Pisum Pisum NNP cord-008426-ktn8c0zx 11 38 sativum sativum NNP cord-008426-ktn8c0zx 11 39 but but CC cord-008426-ktn8c0zx 11 40 fails fail VBZ cord-008426-ktn8c0zx 11 41 to to TO cord-008426-ktn8c0zx 11 42 systemically systemically RB cord-008426-ktn8c0zx 11 43 infect infect VB cord-008426-ktn8c0zx 11 44 beans bean NNS cord-008426-ktn8c0zx 11 45 ( ( -LRB- cord-008426-ktn8c0zx 11 46 Shepherd Shepherd NNP cord-008426-ktn8c0zx 11 47 and and CC cord-008426-ktn8c0zx 11 48 Fulton Fulton NNP cord-008426-ktn8c0zx 11 49 , , , cord-008426-ktn8c0zx 11 50 1962 1962 CD cord-008426-ktn8c0zx 11 51 ) ) -RRB- cord-008426-ktn8c0zx 11 52 . . . cord-008426-ktn8c0zx 12 1 The the DT cord-008426-ktn8c0zx 12 2 Ghana Ghana NNP cord-008426-ktn8c0zx 12 3 and and CC cord-008426-ktn8c0zx 12 4 Mexican mexican JJ cord-008426-ktn8c0zx 12 5 or or CC cord-008426-ktn8c0zx 12 6 severe severe JJ cord-008426-ktn8c0zx 12 7 bean bean NN cord-008426-ktn8c0zx 12 8 mosaic mosaic NN cord-008426-ktn8c0zx 12 9 strains strain NNS cord-008426-ktn8c0zx 12 10 ( ( -LRB- cord-008426-ktn8c0zx 12 11 SBMV SBMV NNP cord-008426-ktn8c0zx 12 12 - - HYPH cord-008426-ktn8c0zx 12 13 G G NNP cord-008426-ktn8c0zx 12 14 and and CC cord-008426-ktn8c0zx 12 15 SBMV SBMV NNP cord-008426-ktn8c0zx 12 16 - - HYPH cord-008426-ktn8c0zx 12 17 M M NNP cord-008426-ktn8c0zx 12 18 ) ) -RRB- cord-008426-ktn8c0zx 13 1 ( ( -LRB- cord-008426-ktn8c0zx 13 2 Lamptey Lamptey NNP cord-008426-ktn8c0zx 13 3 and and CC cord-008426-ktn8c0zx 13 4 Hamilton Hamilton NNP cord-008426-ktn8c0zx 13 5 , , , cord-008426-ktn8c0zx 13 6 1974 1974 CD cord-008426-ktn8c0zx 13 7 ; ; : cord-008426-ktn8c0zx 13 8 Yerkes Yerkes NNP cord-008426-ktn8c0zx 13 9 and and CC cord-008426-ktn8c0zx 13 10 Patino Patino NNP cord-008426-ktn8c0zx 13 11 , , , cord-008426-ktn8c0zx 13 12 1960 1960 CD cord-008426-ktn8c0zx 13 13 ) ) -RRB- cord-008426-ktn8c0zx 13 14 , , , cord-008426-ktn8c0zx 13 15 which which WDT cord-008426-ktn8c0zx 13 16 are be VBP cord-008426-ktn8c0zx 13 17 transmissible transmissible JJ cord-008426-ktn8c0zx 13 18 to to IN cord-008426-ktn8c0zx 13 19 several several JJ cord-008426-ktn8c0zx 13 20 cultivars cultivar NNS cord-008426-ktn8c0zx 13 21 of of IN cord-008426-ktn8c0zx 13 22 both both DT cord-008426-ktn8c0zx 13 23 bean bean NN cord-008426-ktn8c0zx 13 24 and and CC cord-008426-ktn8c0zx 13 25 cowpea cowpea NNP cord-008426-ktn8c0zx 13 26 , , , cord-008426-ktn8c0zx 13 27 are be VBP cord-008426-ktn8c0zx 13 28 distinguished distinguished JJ cord-008426-ktn8c0zx 13 29 bytheir bytheir JJ cord-008426-ktn8c0zx 13 30 reaction reaction NN cord-008426-ktn8c0zx 13 31 in in IN cord-008426-ktn8c0zx 13 32 certain certain JJ cord-008426-ktn8c0zx 13 33 cultivars cultivar NNS cord-008426-ktn8c0zx 13 34 and and CC cord-008426-ktn8c0zx 13 35 also also RB cord-008426-ktn8c0zx 13 36 serologically serologically RB cord-008426-ktn8c0zx 13 37 . . . cord-008426-ktn8c0zx 14 1 The the DT cord-008426-ktn8c0zx 14 2 SBMV SBMV NNP cord-008426-ktn8c0zx 14 3 genome genome NN cord-008426-ktn8c0zx 14 4 consists consist VBZ cord-008426-ktn8c0zx 14 5 of of IN cord-008426-ktn8c0zx 14 6 a a DT cord-008426-ktn8c0zx 14 7 single single JJ cord-008426-ktn8c0zx 14 8 molecule molecule NN cord-008426-ktn8c0zx 14 9 of of IN cord-008426-ktn8c0zx 14 10 positive positive JJ cord-008426-ktn8c0zx 14 11 sense sense NN cord-008426-ktn8c0zx 14 12 RNA RNA NNP cord-008426-ktn8c0zx 14 13 ( ( -LRB- cord-008426-ktn8c0zx 14 14 Mr Mr NNP cord-008426-ktn8c0zx 14 15 1.4 1.4 CD cord-008426-ktn8c0zx 14 16 x x SYM cord-008426-ktn8c0zx 14 17 106 106 CD cord-008426-ktn8c0zx 14 18 ) ) -RRB- cord-008426-ktn8c0zx 14 19 which which WDT cord-008426-ktn8c0zx 14 20 constitutes constitute VBZ cord-008426-ktn8c0zx 14 21 approximately approximately RB cord-008426-ktn8c0zx 14 22 21 21 CD cord-008426-ktn8c0zx 14 23 % % NN cord-008426-ktn8c0zx 14 24 of of IN cord-008426-ktn8c0zx 14 25 the the DT cord-008426-ktn8c0zx 14 26 total total JJ cord-008426-ktn8c0zx 14 27 particle particle NN cord-008426-ktn8c0zx 14 28 weight weight NN cord-008426-ktn8c0zx 14 29 . . . cord-008426-ktn8c0zx 15 1 The the DT cord-008426-ktn8c0zx 15 2 5 5 CD cord-008426-ktn8c0zx 15 3 ' ' POS cord-008426-ktn8c0zx 15 4 terminus terminus NN cord-008426-ktn8c0zx 15 5 of of IN cord-008426-ktn8c0zx 15 6 SBMV SBMV NNP cord-008426-ktn8c0zx 15 7 RNA RNA NNP cord-008426-ktn8c0zx 15 8 has have VBZ cord-008426-ktn8c0zx 15 9 a a DT cord-008426-ktn8c0zx 15 10 covalently covalently RB cord-008426-ktn8c0zx 15 11 linked link VBN cord-008426-ktn8c0zx 15 12 protein protein NN cord-008426-ktn8c0zx 15 13 ( ( -LRB- cord-008426-ktn8c0zx 15 14 VPg VPg NNS cord-008426-ktn8c0zx 15 15 ) ) -RRB- cord-008426-ktn8c0zx 15 16 ( ( -LRB- cord-008426-ktn8c0zx 15 17 Ghosh Ghosh NNP cord-008426-ktn8c0zx 15 18 et et NNP cord-008426-ktn8c0zx 15 19 al al NNP cord-008426-ktn8c0zx 15 20 . . NNP cord-008426-ktn8c0zx 15 21 , , , cord-008426-ktn8c0zx 15 22 1979 1979 CD cord-008426-ktn8c0zx 15 23 ) ) -RRB- cord-008426-ktn8c0zx 15 24 of of IN cord-008426-ktn8c0zx 15 25 molecular molecular JJ cord-008426-ktn8c0zx 15 26 weight weight NN cord-008426-ktn8c0zx 15 27 between between IN cord-008426-ktn8c0zx 15 28 10 10 CD cord-008426-ktn8c0zx 15 29 ( ( -LRB- cord-008426-ktn8c0zx 15 30 SBMV SBMV NNP cord-008426-ktn8c0zx 15 31 - - HYPH cord-008426-ktn8c0zx 15 32 C C NNP cord-008426-ktn8c0zx 15 33 ) ) -RRB- cord-008426-ktn8c0zx 15 34 and and CC cord-008426-ktn8c0zx 15 35 12 12 CD cord-008426-ktn8c0zx 15 36 kDa kDa NNS cord-008426-ktn8c0zx 15 37 ( ( -LRB- cord-008426-ktn8c0zx 15 38 SBMV SBMV NNP cord-008426-ktn8c0zx 15 39 - - HYPH cord-008426-ktn8c0zx 15 40 B B NNP cord-008426-ktn8c0zx 15 41 ) ) -RRB- cord-008426-ktn8c0zx 16 1 ( ( -LRB- cord-008426-ktn8c0zx 16 2 Mang Mang NNP cord-008426-ktn8c0zx 16 3 et et NNP cord-008426-ktn8c0zx 16 4 al al NNP cord-008426-ktn8c0zx 16 5 . . NNP cord-008426-ktn8c0zx 16 6 , , , cord-008426-ktn8c0zx 16 7 1982 1982 CD cord-008426-ktn8c0zx 16 8 ) ) -RRB- cord-008426-ktn8c0zx 16 9 , , , cord-008426-ktn8c0zx 16 10 which which WDT cord-008426-ktn8c0zx 16 11 is be VBZ cord-008426-ktn8c0zx 16 12 essential essential JJ cord-008426-ktn8c0zx 16 13 for for IN cord-008426-ktn8c0zx 16 14 infectivity infectivity NN cord-008426-ktn8c0zx 16 15 ( ( -LRB- cord-008426-ktn8c0zx 16 16 Veerisetty Veerisetty NNP cord-008426-ktn8c0zx 16 17 and and CC cord-008426-ktn8c0zx 16 18 Sehgal Sehgal NNP cord-008426-ktn8c0zx 16 19 , , , cord-008426-ktn8c0zx 16 20 1980 1980 CD cord-008426-ktn8c0zx 16 21 ) ) -RRB- cord-008426-ktn8c0zx 16 22 . . . cord-008426-ktn8c0zx 17 1 The the DT cord-008426-ktn8c0zx 17 2 3 3 CD cord-008426-ktn8c0zx 17 3 ' ' NN cord-008426-ktn8c0zx 17 4 terminus terminus NN cord-008426-ktn8c0zx 17 5 of of IN cord-008426-ktn8c0zx 17 6 SBMV SBMV NNP cord-008426-ktn8c0zx 17 7 does do VBZ cord-008426-ktn8c0zx 17 8 not not RB cord-008426-ktn8c0zx 17 9 have have VB cord-008426-ktn8c0zx 17 10 a a DT cord-008426-ktn8c0zx 17 11 pely(A pely(a JJ cord-008426-ktn8c0zx 17 12 ) ) -RRB- cord-008426-ktn8c0zx 18 1 Sequence sequence NN cord-008426-ktn8c0zx 18 2 data datum NNS cord-008426-ktn8c0zx 18 3 from from IN cord-008426-ktn8c0zx 18 4 this this DT cord-008426-ktn8c0zx 18 5 article article NN cord-008426-ktn8c0zx 18 6 have have VBP cord-008426-ktn8c0zx 18 7 been be VBN cord-008426-ktn8c0zx 18 8 deposited deposit VBN cord-008426-ktn8c0zx 18 9 with with IN cord-008426-ktn8c0zx 18 10 the the DT cord-008426-ktn8c0zx 18 11 Gen-~enk Gen-~enk NNP cord-008426-ktn8c0zx 18 12 Data Data NNP cord-008426-ktn8c0zx 18 13 Libraries Libraries NNPS cord-008426-ktn8c0zx 18 14 under under IN cord-008426-ktn8c0zx 19 1 Accession Accession NNP cord-008426-ktn8c0zx 19 2 No no NN cord-008426-ktn8c0zx 19 3 . . . cord-008426-ktn8c0zx 20 1 L34672 L34672 NNP cord-008426-ktn8c0zx 20 2 . . . cord-008426-ktn8c0zx 21 1 Present present JJ cord-008426-ktn8c0zx 21 2 address address NN cord-008426-ktn8c0zx 21 3 , , , cord-008426-ktn8c0zx 21 4 Depaitment Depaitment NNP cord-008426-ktn8c0zx 21 5 of of IN cord-008426-ktn8c0zx 21 6 Genetics Genetics NNP cord-008426-ktn8c0zx 21 7 and and CC cord-008426-ktn8c0zx 21 8 Cellular Cellular NNP cord-008426-ktn8c0zx 21 9 Biology Biology NNP cord-008426-ktn8c0zx 21 10 , , , cord-008426-ktn8c0zx 21 11 Univereiti Univereiti NNP cord-008426-ktn8c0zx 21 12 Malaya Malaya NNP cord-008426-ktn8c0zx 21 13 , , , cord-008426-ktn8c0zx 21 14 59100 59100 CD cord-008426-ktn8c0zx 21 15 Kuala Kuala NNP cord-008426-ktn8c0zx 21 16 Lumpur Lumpur NNP cord-008426-ktn8c0zx 21 17 , , , cord-008426-ktn8c0zx 21 18 Malaysia Malaysia NNP cord-008426-ktn8c0zx 21 19 . . . cord-008426-ktn8c0zx 21 20 2To 2To NNP cord-008426-ktn8c0zx 21 21 whom whom WP cord-008426-ktn8c0zx 21 22 correspondence correspondence NN cord-008426-ktn8c0zx 21 23 and and CC cord-008426-ktn8c0zx 21 24 reprint reprint NN cord-008426-ktn8c0zx 21 25 requests request NNS cord-008426-ktn8c0zx 21 26 should should MD cord-008426-ktn8c0zx 21 27 be be VB cord-008426-ktn8c0zx 21 28 addressed address VBN cord-008426-ktn8c0zx 21 29 . . . cord-008426-ktn8c0zx 22 1 tail tail NN cord-008426-ktn8c0zx 22 2 ( ( -LRB- cord-008426-ktn8c0zx 22 3 Mang Mang NNP cord-008426-ktn8c0zx 22 4 et et FW cord-008426-ktn8c0zx 22 5 al al NNP cord-008426-ktn8c0zx 22 6 . . NNP cord-008426-ktn8c0zx 22 7 , , , cord-008426-ktn8c0zx 22 8 1982 1982 CD cord-008426-ktn8c0zx 22 9 ) ) -RRB- cord-008426-ktn8c0zx 23 1 but but CC cord-008426-ktn8c0zx 23 2 contains contain VBZ cord-008426-ktn8c0zx 23 3 a a DT cord-008426-ktn8c0zx 23 4 free free JJ cord-008426-ktn8c0zx 23 5 hydroxyl hydroxyl NN cord-008426-ktn8c0zx 23 6 group group NN cord-008426-ktn8c0zx 23 7 ( ( -LRB- cord-008426-ktn8c0zx 23 8 Ghosh Ghosh NNP cord-008426-ktn8c0zx 23 9 et et NNP cord-008426-ktn8c0zx 23 10 al al NNP cord-008426-ktn8c0zx 23 11 . . NNP cord-008426-ktn8c0zx 23 12 , , , cord-008426-ktn8c0zx 23 13 1979 1979 CD cord-008426-ktn8c0zx 23 14 ) ) -RRB- cord-008426-ktn8c0zx 23 15 . . . cord-008426-ktn8c0zx 24 1 A a DT cord-008426-ktn8c0zx 24 2 subgenomic subgenomic NNP cord-008426-ktn8c0zx 24 3 RNA RNA NNP cord-008426-ktn8c0zx 24 4 of of IN cord-008426-ktn8c0zx 24 5 0.4 0.4 CD cord-008426-ktn8c0zx 24 6 X x SYM cord-008426-ktn8c0zx 24 7 105 105 CD cord-008426-ktn8c0zx 24 8 encodes encode VBZ cord-008426-ktn8c0zx 24 9 the the DT cord-008426-ktn8c0zx 24 10 gene gene NN cord-008426-ktn8c0zx 24 11 for for IN cord-008426-ktn8c0zx 24 12 viral viral JJ cord-008426-ktn8c0zx 24 13 coat coat NN cord-008426-ktn8c0zx 24 14 protein protein NN cord-008426-ktn8c0zx 24 15 Ghosh Ghosh NNP cord-008426-ktn8c0zx 24 16 eta/. eta/. CD cord-008426-ktn8c0zx 24 17 , , , cord-008426-ktn8c0zx 24 18 1981 1981 CD cord-008426-ktn8c0zx 24 19 ) ) -RRB- cord-008426-ktn8c0zx 24 20 . . . cord-008426-ktn8c0zx 25 1 The the DT cord-008426-ktn8c0zx 25 2 full full JJ cord-008426-ktn8c0zx 25 3 nucleotide nucleotide JJ cord-008426-ktn8c0zx 25 4 sequence sequence NN cord-008426-ktn8c0zx 25 5 of of IN cord-008426-ktn8c0zx 25 6 the the DT cord-008426-ktn8c0zx 25 7 cowpea cowpea NN cord-008426-ktn8c0zx 25 8 strain strain NN cord-008426-ktn8c0zx 25 9 , , , cord-008426-ktn8c0zx 25 10 SBMV SBMV NNP cord-008426-ktn8c0zx 25 11 - - HYPH cord-008426-ktn8c0zx 25 12 C C NNP cord-008426-ktn8c0zx 25 13 , , , cord-008426-ktn8c0zx 25 14 has have VBZ cord-008426-ktn8c0zx 25 15 been be VBN cord-008426-ktn8c0zx 25 16 determined determine VBN cord-008426-ktn8c0zx 25 17 ( ( -LRB- cord-008426-ktn8c0zx 26 1 Wu Wu NNP cord-008426-ktn8c0zx 26 2 et et NNP cord-008426-ktn8c0zx 26 3 al al NNP cord-008426-ktn8c0zx 26 4 . . NNP cord-008426-ktn8c0zx 26 5 , , , cord-008426-ktn8c0zx 26 6 1987 1987 CD cord-008426-ktn8c0zx 26 7 ) ) -RRB- cord-008426-ktn8c0zx 26 8 . . . cord-008426-ktn8c0zx 27 1 The the DT cord-008426-ktn8c0zx 27 2 genome genome NN cord-008426-ktn8c0zx 27 3 consists consist VBZ cord-008426-ktn8c0zx 27 4 of of IN cord-008426-ktn8c0zx 27 5 4194 4194 CD cord-008426-ktn8c0zx 27 6 nucleotides nucleotide NNS cord-008426-ktn8c0zx 27 7 with with IN cord-008426-ktn8c0zx 27 8 four four CD cord-008426-ktn8c0zx 27 9 open open JJ cord-008426-ktn8c0zx 27 10 reading reading NN cord-008426-ktn8c0zx 27 11 frames frame NNS cord-008426-ktn8c0zx 27 12 designated designate VBN cord-008426-ktn8c0zx 27 13 ORFs ORFs NNP cord-008426-ktn8c0zx 27 14 1 1 CD cord-008426-ktn8c0zx 27 15 - - SYM cord-008426-ktn8c0zx 27 16 4 4 CD cord-008426-ktn8c0zx 27 17 ( ( -LRB- cord-008426-ktn8c0zx 27 18 Fig Fig NNP cord-008426-ktn8c0zx 27 19 . . . cord-008426-ktn8c0zx 27 20 1 1 CD cord-008426-ktn8c0zx 27 21 ) ) -RRB- cord-008426-ktn8c0zx 27 22 . . . cord-008426-ktn8c0zx 28 1 In in IN cord-008426-ktn8c0zx 28 2 addition addition NN cord-008426-ktn8c0zx 28 3 , , , cord-008426-ktn8c0zx 28 4 limited limited JJ cord-008426-ktn8c0zx 28 5 sequence sequence NN cord-008426-ktn8c0zx 28 6 data datum NNS cord-008426-ktn8c0zx 28 7 are be VBP cord-008426-ktn8c0zx 28 8 available available JJ cord-008426-ktn8c0zx 28 9 for for IN cord-008426-ktn8c0zx 28 10 the the DT cord-008426-ktn8c0zx 28 11 3 3 CD cord-008426-ktn8c0zx 28 12 ' ' NN cord-008426-ktn8c0zx 28 13 end end NN cord-008426-ktn8c0zx 28 14 of of IN cord-008426-ktn8c0zx 28 15 SBMV SBMV NNP cord-008426-ktn8c0zx 28 16 - - HYPH cord-008426-ktn8c0zx 28 17 B B NNP cord-008426-ktn8c0zx 28 18 ( ( -LRB- cord-008426-ktn8c0zx 28 19 Mang Mang NNP cord-008426-ktn8c0zx 28 20 eta/. eta/. CD cord-008426-ktn8c0zx 28 21 , , , cord-008426-ktn8c0zx 28 22 1982 1982 CD cord-008426-ktn8c0zx 28 23 ) ) -RRB- cord-008426-ktn8c0zx 28 24 , , , cord-008426-ktn8c0zx 28 25 which which WDT cord-008426-ktn8c0zx 28 26 showed show VBD cord-008426-ktn8c0zx 28 27 little little JJ cord-008426-ktn8c0zx 28 28 similarity similarity NN cord-008426-ktn8c0zx 28 29 to to IN cord-008426-ktn8c0zx 28 30 the the DT cord-008426-ktn8c0zx 28 31 sequence sequence NN cord-008426-ktn8c0zx 28 32 of of IN cord-008426-ktn8c0zx 28 33 SBMV SBMV NNP cord-008426-ktn8c0zx 28 34 - - HYPH cord-008426-ktn8c0zx 28 35 C. C. NNP cord-008426-ktn8c0zx 29 1 The the DT cord-008426-ktn8c0zx 29 2 recently recently RB cord-008426-ktn8c0zx 29 3 published publish VBN cord-008426-ktn8c0zx 29 4 nucleotide nucleotide JJ cord-008426-ktn8c0zx 29 5 sequence sequence NN cord-008426-ktn8c0zx 29 6 ( ( -LRB- cord-008426-ktn8c0zx 29 7 4450 4450 CD cord-008426-ktn8c0zx 29 8 nt nt NN cord-008426-ktn8c0zx 29 9 ) ) -RRB- cord-008426-ktn8c0zx 29 10 of of IN cord-008426-ktn8c0zx 29 11 rice rice NN cord-008426-ktn8c0zx 29 12 yellow yellow NNP cord-008426-ktn8c0zx 29 13 mottle mottle NN cord-008426-ktn8c0zx 29 14 virus virus NN cord-008426-ktn8c0zx 29 15 ( ( -LRB- cord-008426-ktn8c0zx 29 16 RYMV RYMV NNP cord-008426-ktn8c0zx 29 17 ) ) -RRB- cord-008426-ktn8c0zx 29 18 , , , cord-008426-ktn8c0zx 29 19 another another DT cord-008426-ktn8c0zx 29 20 sobemovirus sobemovirus NN cord-008426-ktn8c0zx 29 21 ( ( -LRB- cord-008426-ktn8c0zx 29 22 Ngon Ngon NNP cord-008426-ktn8c0zx 29 23 A A NNP cord-008426-ktn8c0zx 29 24 Yassi Yassi NNP cord-008426-ktn8c0zx 29 25 et et FW cord-008426-ktn8c0zx 29 26 aL aL NNP cord-008426-ktn8c0zx 29 27 , , , cord-008426-ktn8c0zx 29 28 1994 1994 CD cord-008426-ktn8c0zx 29 29 ) ) -RRB- cord-008426-ktn8c0zx 29 30 , , , cord-008426-ktn8c0zx 29 31 shows show VBZ cord-008426-ktn8c0zx 29 32 that that IN cord-008426-ktn8c0zx 29 33 it -PRON- PRP cord-008426-ktn8c0zx 29 34 has have VBZ cord-008426-ktn8c0zx 29 35 a a DT cord-008426-ktn8c0zx 29 36 similar similar JJ cord-008426-ktn8c0zx 29 37 genome genome NN cord-008426-ktn8c0zx 29 38 organization organization NN cord-008426-ktn8c0zx 29 39 to to IN cord-008426-ktn8c0zx 29 40 SBMV SBMV NNP cord-008426-ktn8c0zx 29 41 - - HYPH cord-008426-ktn8c0zx 29 42 C C NNP cord-008426-ktn8c0zx 30 1 ( ( -LRB- cord-008426-ktn8c0zx 30 2 Fig Fig NNP cord-008426-ktn8c0zx 30 3 . . NNP cord-008426-ktn8c0zx 30 4 1 1 CD cord-008426-ktn8c0zx 30 5 ) ) -RRB- cord-008426-ktn8c0zx 30 6 . . . cord-008426-ktn8c0zx 31 1 The the DT cord-008426-ktn8c0zx 31 2 RNAs rna NNS cord-008426-ktn8c0zx 31 3 of of IN cord-008426-ktn8c0zx 31 4 SBMV SBMV NNP cord-008426-ktn8c0zx 31 5 - - HYPH cord-008426-ktn8c0zx 31 6 B B NNP cord-008426-ktn8c0zx 31 7 , , , cord-008426-ktn8c0zx 31 8 SBMV SBMV NNP cord-008426-ktn8c0zx 31 9 - - HYPH cord-008426-ktn8c0zx 31 10 C C NNP cord-008426-ktn8c0zx 31 11 , , , cord-008426-ktn8c0zx 31 12 and and CC cord-008426-ktn8c0zx 31 13 SBMV SBMV NNP cord-008426-ktn8c0zx 31 14 - - HYPH cord-008426-ktn8c0zx 31 15 GH GH NNP cord-008426-ktn8c0zx 31 16 have have VBP cord-008426-ktn8c0zx 31 17 been be VBN cord-008426-ktn8c0zx 31 18 translated translate VBN cord-008426-ktn8c0zx 31 19 in in IN cord-008426-ktn8c0zx 31 20 the the DT cord-008426-ktn8c0zx 31 21 rabbit rabbit NN cord-008426-ktn8c0zx 31 22 reticulocyte reticulocyte NN cord-008426-ktn8c0zx 31 23 lysate lysate NN cord-008426-ktn8c0zx 31 24 and and CC cord-008426-ktn8c0zx 31 25 wheat wheat NN cord-008426-ktn8c0zx 31 26 germ germ NN cord-008426-ktn8c0zx 31 27 extract extract NN cord-008426-ktn8c0zx 31 28 in in IN cord-008426-ktn8c0zx 31 29 vitro vitro FW cord-008426-ktn8c0zx 31 30 systems system NNS cord-008426-ktn8c0zx 31 31 Ghosh Ghosh NNP cord-008426-ktn8c0zx 31 32 et et NNP cord-008426-ktn8c0zx 31 33 al al NNP cord-008426-ktn8c0zx 31 34 . . NNP cord-008426-ktn8c0zx 31 35 , , , cord-008426-ktn8c0zx 31 36 1981 1981 CD cord-008426-ktn8c0zx 31 37 ; ; . cord-008426-ktn8c0zx 32 1 Rutgers Rutgers NNP cord-008426-ktn8c0zx 32 2 et et NNP cord-008426-ktn8c0zx 32 3 aL aL NNP cord-008426-ktn8c0zx 32 4 , , , cord-008426-ktn8c0zx 32 5 1980 1980 CD cord-008426-ktn8c0zx 32 6 ; ; : cord-008426-ktn8c0zx 32 7 Brisco Brisco NNP cord-008426-ktn8c0zx 32 8 et et NNP cord-008426-ktn8c0zx 32 9 al al NNP cord-008426-ktn8c0zx 32 10 . . NNP cord-008426-ktn8c0zx 32 11 , , , cord-008426-ktn8c0zx 32 12 1985b 1985b CD cord-008426-ktn8c0zx 32 13 ) ) -RRB- cord-008426-ktn8c0zx 32 14 to to TO cord-008426-ktn8c0zx 32 15 give give VB cord-008426-ktn8c0zx 32 16 four four CD cord-008426-ktn8c0zx 32 17 major major JJ cord-008426-ktn8c0zx 32 18 polypeptides= polypeptides= NN cord-008426-ktn8c0zx 32 19 polypeptide polypeptide NN cord-008426-ktn8c0zx 32 20 P1 P1 NNP cord-008426-ktn8c0zx 32 21 of of IN cord-008426-ktn8c0zx 32 22 molecular molecular JJ cord-008426-ktn8c0zx 32 23 weight weight NN cord-008426-ktn8c0zx 32 24 100 100 CD cord-008426-ktn8c0zx 32 25 - - HYPH cord-008426-ktn8c0zx 32 26 105 105 CD cord-008426-ktn8c0zx 32 27 kDa kDa NNPS cord-008426-ktn8c0zx 32 28 , , , cord-008426-ktn8c0zx 32 29 P2 P2 NNP cord-008426-ktn8c0zx 32 30 ( ( -LRB- cord-008426-ktn8c0zx 32 31 60 60 CD cord-008426-ktn8c0zx 32 32 - - SYM cord-008426-ktn8c0zx 32 33 75 75 CD cord-008426-ktn8c0zx 32 34 kDa kDa NNS cord-008426-ktn8c0zx 32 35 ) ) -RRB- cord-008426-ktn8c0zx 32 36 , , , cord-008426-ktn8c0zx 32 37 P3 P3 NNP cord-008426-ktn8c0zx 32 38 ( ( -LRB- cord-008426-ktn8c0zx 32 39 28 28 CD cord-008426-ktn8c0zx 32 40 - - SYM cord-008426-ktn8c0zx 32 41 29 29 CD cord-008426-ktn8c0zx 32 42 kDa kDa NNPS cord-008426-ktn8c0zx 32 43 ) ) -RRB- cord-008426-ktn8c0zx 32 44 , , , cord-008426-ktn8c0zx 32 45 and and CC cord-008426-ktn8c0zx 32 46 P4 p4 NN cord-008426-ktn8c0zx 32 47 of of IN cord-008426-ktn8c0zx 32 48 molecular molecular JJ cord-008426-ktn8c0zx 32 49 weight weight NN cord-008426-ktn8c0zx 32 50 between between IN cord-008426-ktn8c0zx 32 51 14 14 CD cord-008426-ktn8c0zx 32 52 and and CC cord-008426-ktn8c0zx 32 53 25 25 CD cord-008426-ktn8c0zx 32 54 kDa kDa NNS cord-008426-ktn8c0zx 32 55 . . . cord-008426-ktn8c0zx 33 1 Wu Wu NNP cord-008426-ktn8c0zx 33 2 et et NNP cord-008426-ktn8c0zx 33 3 al al NNP cord-008426-ktn8c0zx 33 4 . . . cord-008426-ktn8c0zx 34 1 ( ( -LRB- cord-008426-ktn8c0zx 34 2 1987 1987 CD cord-008426-ktn8c0zx 34 3 ) ) -RRB- cord-008426-ktn8c0zx 34 4 related relate VBD cord-008426-ktn8c0zx 34 5 these these DT cord-008426-ktn8c0zx 34 6 products product NNS cord-008426-ktn8c0zx 34 7 to to IN cord-008426-ktn8c0zx 34 8 ORFs ORFs NNP cord-008426-ktn8c0zx 34 9 1 1 CD cord-008426-ktn8c0zx 34 10 ( ( -LRB- cord-008426-ktn8c0zx 34 11 P4 P4 NNP cord-008426-ktn8c0zx 34 12 ) ) -RRB- cord-008426-ktn8c0zx 34 13 , , , cord-008426-ktn8c0zx 34 14 2 2 CD cord-008426-ktn8c0zx 34 15 ( ( -LRB- cord-008426-ktn8c0zx 34 16 P1 P1 NNP cord-008426-ktn8c0zx 34 17 and and CC cord-008426-ktn8c0zx 34 18 P2 P2 NNP cord-008426-ktn8c0zx 34 19 ) ) -RRB- cord-008426-ktn8c0zx 34 20 , , , cord-008426-ktn8c0zx 34 21 and and CC cord-008426-ktn8c0zx 34 22 4 4 CD cord-008426-ktn8c0zx 34 23 ( ( -LRB- cord-008426-ktn8c0zx 34 24 P3 P3 NNP cord-008426-ktn8c0zx 34 25 , , , cord-008426-ktn8c0zx 34 26 coat coat NN cord-008426-ktn8c0zx 34 27 protein protein NN cord-008426-ktn8c0zx 34 28 ) ) -RRB- cord-008426-ktn8c0zx 34 29 of of IN cord-008426-ktn8c0zx 34 30 the the DT cord-008426-ktn8c0zx 34 31 SBMV SBMV NNP cord-008426-ktn8c0zx 34 32 - - HYPH cord-008426-ktn8c0zx 34 33 C C NNP cord-008426-ktn8c0zx 34 34 sequence sequence NN cord-008426-ktn8c0zx 34 35 . . . cord-008426-ktn8c0zx 35 1 We -PRON- PRP cord-008426-ktn8c0zx 35 2 have have VBP cord-008426-ktn8c0zx 35 3 determined determine VBN cord-008426-ktn8c0zx 35 4 the the DT cord-008426-ktn8c0zx 35 5 complete complete JJ cord-008426-ktn8c0zx 35 6 sequence sequence NN cord-008426-ktn8c0zx 35 7 of of IN cord-008426-ktn8c0zx 35 8 the the DT cord-008426-ktn8c0zx 35 9 genomic genomic JJ cord-008426-ktn8c0zx 35 10 RNA RNA NNP cord-008426-ktn8c0zx 35 11 of of IN cord-008426-ktn8c0zx 35 12 SBMV SBMV NNP cord-008426-ktn8c0zx 36 1 -B. -B. NFP cord-008426-ktn8c0zx 36 2 Detailed detailed JJ cord-008426-ktn8c0zx 36 3 comparison comparison NN cord-008426-ktn8c0zx 36 4 of of IN cord-008426-ktn8c0zx 36 5 the the DT cord-008426-ktn8c0zx 36 6 SBMV SBMV NNP cord-008426-ktn8c0zx 36 7 - - HYPH cord-008426-ktn8c0zx 36 8 B b NN cord-008426-ktn8c0zx 36 9 sequence sequence NN cord-008426-ktn8c0zx 36 10 with with IN cord-008426-ktn8c0zx 36 11 that that DT cord-008426-ktn8c0zx 36 12 of of IN cord-008426-ktn8c0zx 36 13 SBMV SBMV NNP cord-008426-ktn8c0zx 36 14 - - HYPH cord-008426-ktn8c0zx 36 15 C C NNP cord-008426-ktn8c0zx 36 16 RNA RNA NNP cord-008426-ktn8c0zx 36 17 reveals reveal VBZ cord-008426-ktn8c0zx 36 18 significant significant JJ cord-008426-ktn8c0zx 36 19 differences difference NNS cord-008426-ktn8c0zx 36 20 in in IN cord-008426-ktn8c0zx 36 21 the the DT cord-008426-ktn8c0zx 36 22 organization organization NN cord-008426-ktn8c0zx 36 23 and and CC cord-008426-ktn8c0zx 36 24 deduced deduce VBD cord-008426-ktn8c0zx 36 25 amino amino NN cord-008426-ktn8c0zx 36 26 acid acid NN cord-008426-ktn8c0zx 36 27 sequences sequence NNS cord-008426-ktn8c0zx 36 28 of of IN cord-008426-ktn8c0zx 36 29 the the DT cord-008426-ktn8c0zx 36 30 predicted predict VBN cord-008426-ktn8c0zx 36 31 major major JJ cord-008426-ktn8c0zx 36 32 open open JJ cord-008426-ktn8c0zx 36 33 reading reading NN cord-008426-ktn8c0zx 36 34 frames frame NNS cord-008426-ktn8c0zx 36 35 . . . cord-008426-ktn8c0zx 37 1 These these DT cord-008426-ktn8c0zx 37 2 comparisons comparison NNS cord-008426-ktn8c0zx 37 3 have have VBP cord-008426-ktn8c0zx 37 4 been be VBN cord-008426-ktn8c0zx 37 5 extended extend VBN cord-008426-ktn8c0zx 37 6 to to IN cord-008426-ktn8c0zx 37 7 a a DT cord-008426-ktn8c0zx 37 8 comparison comparison NN cord-008426-ktn8c0zx 37 9 with with IN cord-008426-ktn8c0zx 37 10 other other JJ cord-008426-ktn8c0zx 37 11 plant plant NN cord-008426-ktn8c0zx 37 12 viruses virus NNS cord-008426-ktn8c0zx 37 13 . . . cord-008426-ktn8c0zx 38 1 Our -PRON- PRP$ cord-008426-ktn8c0zx 38 2 observations observation NNS cord-008426-ktn8c0zx 38 3 suggest suggest VBP cord-008426-ktn8c0zx 38 4 that that IN cord-008426-ktn8c0zx 38 5 while while IN cord-008426-ktn8c0zx 38 6 SBMV SBMV NNP cord-008426-ktn8c0zx 38 7 - - HYPH cord-008426-ktn8c0zx 38 8 B B NNP cord-008426-ktn8c0zx 38 9 and and CC cord-008426-ktn8c0zx 38 10 SBMV SBMV NNP cord-008426-ktn8c0zx 38 11 - - HYPH cord-008426-ktn8c0zx 38 12 C C NNP cord-008426-ktn8c0zx 38 13 are be VBP cord-008426-ktn8c0zx 38 14 related relate VBN cord-008426-ktn8c0zx 38 15 they -PRON- PRP cord-008426-ktn8c0zx 38 16 should should MD cord-008426-ktn8c0zx 38 17 be be VB cord-008426-ktn8c0zx 38 18 considered consider VBN cord-008426-ktn8c0zx 38 19 as as IN cord-008426-ktn8c0zx 38 20 distinct distinct JJ cord-008426-ktn8c0zx 38 21 viruses virus NNS cord-008426-ktn8c0zx 38 22 . . . cord-008426-ktn8c0zx 38 23 _SP cord-008426-ktn8c0zx 39 1 Virus virus NN cord-008426-ktn8c0zx 39 2 purification purification NN cord-008426-ktn8c0zx 39 3 and and CC cord-008426-ktn8c0zx 39 4 RNA RNA NNP cord-008426-ktn8c0zx 39 5 extraction extraction NN cord-008426-ktn8c0zx 39 6 SBMV SBMV NNP cord-008426-ktn8c0zx 39 7 - - HYPH cord-008426-ktn8c0zx 39 8 B B NNP cord-008426-ktn8c0zx 39 9 , , , cord-008426-ktn8c0zx 39 10 originally originally RB cord-008426-ktn8c0zx 39 11 obtained obtain VBN cord-008426-ktn8c0zx 39 12 from from IN cord-008426-ktn8c0zx 39 13 Dr. Dr. NNP cord-008426-ktn8c0zx 39 14 J. J. NNP cord-008426-ktn8c0zx 39 15 P. P. NNP cord-008426-ktn8c0zx 39 16 Fulton Fulton NNP cord-008426-ktn8c0zx 39 17 ( ( -LRB- cord-008426-ktn8c0zx 39 18 Arkansas Arkansas NNP cord-008426-ktn8c0zx 39 19 ) ) -RRB- cord-008426-ktn8c0zx 39 20 and and CC cord-008426-ktn8c0zx 39 21 maintained maintain VBD cord-008426-ktn8c0zx 39 22 as as IN cord-008426-ktn8c0zx 39 23 dried dry VBN cord-008426-ktn8c0zx 39 24 leaves leave NNS cord-008426-ktn8c0zx 39 25 since since IN cord-008426-ktn8c0zx 39 26 1974 1974 CD cord-008426-ktn8c0zx 39 27 , , , cord-008426-ktn8c0zx 39 28 was be VBD cord-008426-ktn8c0zx 39 29 propagated propagate VBN cord-008426-ktn8c0zx 39 30 in in IN cord-008426-ktn8c0zx 39 31 P. P. NNP cord-008426-ktn8c0zx 39 32 vu vu NNP cord-008426-ktn8c0zx 39 33 / / SYM cord-008426-ktn8c0zx 39 34 gar gar NNP cord-008426-ktn8c0zx 39 35 / / SYM cord-008426-ktn8c0zx 39 36 s s NNP cord-008426-ktn8c0zx 39 37 ( ( -LRB- cord-008426-ktn8c0zx 39 38 cv cv NN cord-008426-ktn8c0zx 39 39 . . . cord-008426-ktn8c0zx 40 1 The the DT cord-008426-ktn8c0zx 40 2 Prince Prince NNP cord-008426-ktn8c0zx 40 3 ) ) -RRB- cord-008426-ktn8c0zx 40 4 plants plant NNS cord-008426-ktn8c0zx 40 5 and and CC cord-008426-ktn8c0zx 40 6 the the DT cord-008426-ktn8c0zx 40 7 virus virus NN cord-008426-ktn8c0zx 40 8 was be VBD cord-008426-ktn8c0zx 40 9 purified purify VBN cord-008426-ktn8c0zx 40 10 essentially essentially RB cord-008426-ktn8c0zx 40 11 as as IN cord-008426-ktn8c0zx 40 12 described describe VBN cord-008426-ktn8c0zx 40 13 by by IN cord-008426-ktn8c0zx 40 14 Hull Hull NNP cord-008426-ktn8c0zx 40 15 ( ( -LRB- cord-008426-ktn8c0zx 40 16 1985 1985 CD cord-008426-ktn8c0zx 40 17 ) ) -RRB- cord-008426-ktn8c0zx 40 18 . . . cord-008426-ktn8c0zx 41 1 Viral Viral NNP cord-008426-ktn8c0zx 41 2 RNA RNA NNP cord-008426-ktn8c0zx 41 3 was be VBD cord-008426-ktn8c0zx 41 4 extracted extract VBN cord-008426-ktn8c0zx 41 5 using use VBG cord-008426-ktn8c0zx 41 6 phenol phenol NN cord-008426-ktn8c0zx 41 7 - - HYPH cord-008426-ktn8c0zx 41 8 chloroform chloroform NN cord-008426-ktn8c0zx 41 9 by by IN cord-008426-ktn8c0zx 41 10 the the DT cord-008426-ktn8c0zx 41 11 method method NN cord-008426-ktn8c0zx 41 12 of of IN cord-008426-ktn8c0zx 41 13 Zimmern Zimmern NNP cord-008426-ktn8c0zx 41 14 ( ( -LRB- cord-008426-ktn8c0zx 41 15 1975 1975 CD cord-008426-ktn8c0zx 41 16 ) ) -RRB- cord-008426-ktn8c0zx 41 17 from from IN cord-008426-ktn8c0zx 41 18 virus virus NN cord-008426-ktn8c0zx 41 19 particles particle NNS cord-008426-ktn8c0zx 41 20 dissociated dissociate VBN cord-008426-ktn8c0zx 41 21 in in IN cord-008426-ktn8c0zx 41 22 the the DT cord-008426-ktn8c0zx 41 23 presence presence NN cord-008426-ktn8c0zx 41 24 of of IN cord-008426-ktn8c0zx 41 25 1 1 CD cord-008426-ktn8c0zx 41 26 % % NN cord-008426-ktn8c0zx 41 27 SDS SDS NNP cord-008426-ktn8c0zx 41 28 . . . cord-008426-ktn8c0zx 42 1 First first JJ cord-008426-ktn8c0zx 42 2 - - HYPH cord-008426-ktn8c0zx 42 3 and and CC cord-008426-ktn8c0zx 42 4 second second JJ cord-008426-ktn8c0zx 42 5 - - HYPH cord-008426-ktn8c0zx 42 6 strand strand NN cord-008426-ktn8c0zx 42 7 cDNA cdna NN cord-008426-ktn8c0zx 42 8 synthesis synthesis NN cord-008426-ktn8c0zx 42 9 was be VBD cord-008426-ktn8c0zx 42 10 performed perform VBN cord-008426-ktn8c0zx 42 11 according accord VBG cord-008426-ktn8c0zx 42 12 to to IN cord-008426-ktn8c0zx 42 13 Gubler Gubler NNP cord-008426-ktn8c0zx 42 14 and and CC cord-008426-ktn8c0zx 42 15 Hoffman Hoffman NNP cord-008426-ktn8c0zx 42 16 ( ( -LRB- cord-008426-ktn8c0zx 42 17 1983 1983 CD cord-008426-ktn8c0zx 42 18 ) ) -RRB- cord-008426-ktn8c0zx 42 19 using use VBG cord-008426-ktn8c0zx 42 20 the the DT cord-008426-ktn8c0zx 42 21 cDNA cdna NN cord-008426-ktn8c0zx 42 22 Cloning clone VBG cord-008426-ktn8c0zx 42 23 System System NNP cord-008426-ktn8c0zx 42 24 Plus plus CC cord-008426-ktn8c0zx 42 25 kit kit NN cord-008426-ktn8c0zx 42 26 ( ( -LRB- cord-008426-ktn8c0zx 42 27 Amersham Amersham NNP cord-008426-ktn8c0zx 42 28 ) ) -RRB- cord-008426-ktn8c0zx 42 29 with with IN cord-008426-ktn8c0zx 42 30 Superscript Superscript NNP cord-008426-ktn8c0zx 42 31 reverse reverse NN cord-008426-ktn8c0zx 42 32 transcriptase transcriptase NN cord-008426-ktn8c0zx 42 33 ( ( -LRB- cord-008426-ktn8c0zx 42 34 BRL BRL NNP cord-008426-ktn8c0zx 42 35 ) ) -RRB- cord-008426-ktn8c0zx 42 36 . . . cord-008426-ktn8c0zx 43 1 Second second JJ cord-008426-ktn8c0zx 43 2 - - HYPH cord-008426-ktn8c0zx 43 3 strand strand NN cord-008426-ktn8c0zx 43 4 products product NNS cord-008426-ktn8c0zx 43 5 were be VBD cord-008426-ktn8c0zx 43 6 treated treat VBN cord-008426-ktn8c0zx 43 7 briefly briefly RB cord-008426-ktn8c0zx 43 8 with with IN cord-008426-ktn8c0zx 43 9 T4 T4 NNP cord-008426-ktn8c0zx 43 10 DNA DNA NNP cord-008426-ktn8c0zx 43 11 polymerase polymerase NN cord-008426-ktn8c0zx 43 12 ( ( -LRB- cord-008426-ktn8c0zx 43 13 Sambrook Sambrook NNP cord-008426-ktn8c0zx 43 14 eta/. eta/. NN cord-008426-ktn8c0zx 43 15 , , , cord-008426-ktn8c0zx 43 16 1989 1989 CD cord-008426-ktn8c0zx 43 17 ) ) -RRB- cord-008426-ktn8c0zx 43 18 to to TO cord-008426-ktn8c0zx 43 19 remove remove VB cord-008426-ktn8c0zx 43 20 any any DT cord-008426-ktn8c0zx 43 21 3 3 CD cord-008426-ktn8c0zx 43 22 ' ' '' cord-008426-ktn8c0zx 43 23 protruding protruding JJ cord-008426-ktn8c0zx 43 24 ends end NNS cord-008426-ktn8c0zx 43 25 . . . cord-008426-ktn8c0zx 44 1 The the DT cord-008426-ktn8c0zx 44 2 blunt blunt RB cord-008426-ktn8c0zx 44 3 - - HYPH cord-008426-ktn8c0zx 44 4 ended ended JJ cord-008426-ktn8c0zx 44 5 double double RB cord-008426-ktn8c0zx 44 6 - - HYPH cord-008426-ktn8c0zx 44 7 stranded strand VBN cord-008426-ktn8c0zx 44 8 cDNA cdna NN cord-008426-ktn8c0zx 44 9 was be VBD cord-008426-ktn8c0zx 44 10 size size NN cord-008426-ktn8c0zx 44 11 fractionated fractionate VBN cord-008426-ktn8c0zx 44 12 using use VBG cord-008426-ktn8c0zx 44 13 a a DT cord-008426-ktn8c0zx 44 14 Sephacryl Sephacryl NNP cord-008426-ktn8c0zx 44 15 column column NN cord-008426-ktn8c0zx 44 16 ( ( -LRB- cord-008426-ktn8c0zx 44 17 Size Size NNP cord-008426-ktn8c0zx 44 18 - - HYPH cord-008426-ktn8c0zx 44 19 sep sep NNP cord-008426-ktn8c0zx 44 20 400 400 CD cord-008426-ktn8c0zx 44 21 ; ; : cord-008426-ktn8c0zx 44 22 Pharmacia Pharmacia NNP cord-008426-ktn8c0zx 44 23 ) ) -RRB- cord-008426-ktn8c0zx 44 24 and and CC cord-008426-ktn8c0zx 44 25 products product NNS cord-008426-ktn8c0zx 44 26 > > XX cord-008426-ktn8c0zx 45 1 400 400 CD cord-008426-ktn8c0zx 45 2 bp bp NNP cord-008426-ktn8c0zx 45 3 in in IN cord-008426-ktn8c0zx 45 4 size size NN cord-008426-ktn8c0zx 45 5 were be VBD cord-008426-ktn8c0zx 45 6 cloned clone VBN cord-008426-ktn8c0zx 45 7 into into IN cord-008426-ktn8c0zx 45 8 the the DT cord-008426-ktn8c0zx 45 9 Sinai Sinai NNP cord-008426-ktn8c0zx 45 10 site site NN cord-008426-ktn8c0zx 45 11 of of IN cord-008426-ktn8c0zx 45 12 pBluescript pBluescript NNP cord-008426-ktn8c0zx 45 13 II II NNP cord-008426-ktn8c0zx 45 14 SK(+ SK(+ NNP cord-008426-ktn8c0zx 45 15 ) ) -RRB- cord-008426-ktn8c0zx 45 16 vectors vector NNS cord-008426-ktn8c0zx 45 17 ( ( -LRB- cord-008426-ktn8c0zx 45 18 Stratagene Stratagene NNP cord-008426-ktn8c0zx 45 19 ) ) -RRB- cord-008426-ktn8c0zx 45 20 using use VBG cord-008426-ktn8c0zx 45 21 standard standard JJ cord-008426-ktn8c0zx 45 22 techniques technique NNS cord-008426-ktn8c0zx 45 23 ( ( -LRB- cord-008426-ktn8c0zx 45 24 Sambrook Sambrook NNP cord-008426-ktn8c0zx 45 25 et et NNP cord-008426-ktn8c0zx 45 26 aL aL NNP cord-008426-ktn8c0zx 45 27 , , , cord-008426-ktn8c0zx 45 28 1989 1989 CD cord-008426-ktn8c0zx 45 29 ) ) -RRB- cord-008426-ktn8c0zx 45 30 . . . cord-008426-ktn8c0zx 46 1 The the DT cord-008426-ktn8c0zx 46 2 resulting result VBG cord-008426-ktn8c0zx 46 3 set set NN cord-008426-ktn8c0zx 46 4 of of IN cord-008426-ktn8c0zx 46 5 ovelapping ovelappe VBG cord-008426-ktn8c0zx 46 6 cDNA cdna NN cord-008426-ktn8c0zx 46 7 clones clone NNS cord-008426-ktn8c0zx 46 8 were be VBD cord-008426-ktn8c0zx 46 9 used use VBN cord-008426-ktn8c0zx 46 10 as as IN cord-008426-ktn8c0zx 46 11 templates template NNS cord-008426-ktn8c0zx 46 12 for for IN cord-008426-ktn8c0zx 46 13 sequencing sequencing NN cord-008426-ktn8c0zx 46 14 . . . cord-008426-ktn8c0zx 47 1 Cloning clone VBG cord-008426-ktn8c0zx 47 2 of of IN cord-008426-ktn8c0zx 47 3 the the DT cord-008426-ktn8c0zx 47 4 3 3 CD cord-008426-ktn8c0zx 47 5 ' ' '' cord-008426-ktn8c0zx 47 6 end end NN cord-008426-ktn8c0zx 47 7 . . . cord-008426-ktn8c0zx 48 1 Clones clone NNS cord-008426-ktn8c0zx 48 2 representing represent VBG cord-008426-ktn8c0zx 48 3 the the DT cord-008426-ktn8c0zx 48 4 3 3 CD cord-008426-ktn8c0zx 48 5 ' ' NN cord-008426-ktn8c0zx 48 6 end end NN cord-008426-ktn8c0zx 48 7 of of IN cord-008426-ktn8c0zx 48 8 SBMV SBMV NNP cord-008426-ktn8c0zx 48 9 - - HYPH cord-008426-ktn8c0zx 48 10 B B NNP cord-008426-ktn8c0zx 48 11 RNA RNA NNP cord-008426-ktn8c0zx 48 12 used use VBN cord-008426-ktn8c0zx 48 13 in in IN cord-008426-ktn8c0zx 48 14 the the DT cord-008426-ktn8c0zx 48 15 confirmation confirmation NN cord-008426-ktn8c0zx 48 16 of of IN cord-008426-ktn8c0zx 48 17 the the DT cord-008426-ktn8c0zx 48 18 3 3 CD cord-008426-ktn8c0zx 48 19 ' ' POS cord-008426-ktn8c0zx 48 20 terminal terminal NN cord-008426-ktn8c0zx 48 21 sequences sequence NNS cord-008426-ktn8c0zx 48 22 were be VBD cord-008426-ktn8c0zx 48 23 obtained obtain VBN cord-008426-ktn8c0zx 48 24 by by IN cord-008426-ktn8c0zx 48 25 polyadenylation polyadenylation NN cord-008426-ktn8c0zx 48 26 of of IN cord-008426-ktn8c0zx 48 27 the the DT cord-008426-ktn8c0zx 48 28 RNA RNA NNP cord-008426-ktn8c0zx 48 29 using use VBG cord-008426-ktn8c0zx 48 30 poly(A poly(A NNP cord-008426-ktn8c0zx 48 31 ) ) -RRB- cord-008426-ktn8c0zx 48 32 polymerase polymerase NN cord-008426-ktn8c0zx 48 33 ( ( -LRB- cord-008426-ktn8c0zx 48 34 Pharmacia Pharmacia NNP cord-008426-ktn8c0zx 48 35 ) ) -RRB- cord-008426-ktn8c0zx 48 36 , , , cord-008426-ktn8c0zx 48 37 and and CC cord-008426-ktn8c0zx 48 38 oligo(dT)-primed oligo(dT)-primed NNP cord-008426-ktn8c0zx 48 39 clones clone NNS cord-008426-ktn8c0zx 48 40 were be VBD cord-008426-ktn8c0zx 48 41 generated generate VBN cord-008426-ktn8c0zx 48 42 using use VBG cord-008426-ktn8c0zx 48 43 the the DT cord-008426-ktn8c0zx 48 44 Amersham Amersham NNP cord-008426-ktn8c0zx 48 45 cloning cloning NN cord-008426-ktn8c0zx 48 46 kit kit NN cord-008426-ktn8c0zx 48 47 as as IN cord-008426-ktn8c0zx 48 48 described describe VBN cord-008426-ktn8c0zx 48 49 above above RB cord-008426-ktn8c0zx 48 50 . . . cord-008426-ktn8c0zx 49 1 These these DT cord-008426-ktn8c0zx 49 2 cDNA cdna NN cord-008426-ktn8c0zx 49 3 's 's POS cord-008426-ktn8c0zx 49 4 were be VBD cord-008426-ktn8c0zx 49 5 ligated ligate VBN cord-008426-ktn8c0zx 49 6 into into IN cord-008426-ktn8c0zx 49 7 the the DT cord-008426-ktn8c0zx 49 8 pBluescript pBluescript NNP cord-008426-ktn8c0zx 49 9 vectors vector NNS cord-008426-ktn8c0zx 49 10 at at IN cord-008426-ktn8c0zx 49 11 the the DT cord-008426-ktn8c0zx 49 12 Hincll Hincll NNP cord-008426-ktn8c0zx 49 13 site site NN cord-008426-ktn8c0zx 49 14 . . . cord-008426-ktn8c0zx 50 1 Sequencing sequencing NN cord-008426-ktn8c0zx 50 2 of of IN cord-008426-ktn8c0zx 50 3 SBMV SBMV NNP cord-008426-ktn8c0zx 50 4 - - HYPH cord-008426-ktn8c0zx 50 5 B. B. NNP cord-008426-ktn8c0zx 51 1 The the DT cord-008426-ktn8c0zx 51 2 dideoxnucleotide dideoxnucleotide NN cord-008426-ktn8c0zx 51 3 chain chain NN cord-008426-ktn8c0zx 51 4 termination termination NN cord-008426-ktn8c0zx 51 5 procedure procedure NN cord-008426-ktn8c0zx 51 6 ( ( -LRB- cord-008426-ktn8c0zx 51 7 Sanger Sanger NNP cord-008426-ktn8c0zx 51 8 eta/. eta/. NNP cord-008426-ktn8c0zx 51 9 , , , cord-008426-ktn8c0zx 51 10 1977 1977 CD cord-008426-ktn8c0zx 51 11 ) ) -RRB- cord-008426-ktn8c0zx 51 12 was be VBD cord-008426-ktn8c0zx 51 13 used use VBN cord-008426-ktn8c0zx 51 14 to to TO cord-008426-ktn8c0zx 51 15 sequence sequence VB cord-008426-ktn8c0zx 51 16 the the DT cord-008426-ktn8c0zx 51 17 double double RB cord-008426-ktn8c0zx 51 18 - - HYPH cord-008426-ktn8c0zx 51 19 stranded strand VBN cord-008426-ktn8c0zx 51 20 DNA dna NN cord-008426-ktn8c0zx 51 21 clones clone NNS cord-008426-ktn8c0zx 51 22 with with IN cord-008426-ktn8c0zx 51 23 Sequenase Sequenase NNP cord-008426-ktn8c0zx 51 24 ( ( -LRB- cord-008426-ktn8c0zx 51 25 USB USB NNP cord-008426-ktn8c0zx 51 26 Corp. Corp. NNP cord-008426-ktn8c0zx 51 27 ) ) -RRB- cord-008426-ktn8c0zx 51 28 . . . cord-008426-ktn8c0zx 52 1 Ambiguities ambiguity NNS cord-008426-ktn8c0zx 52 2 in in IN cord-008426-ktn8c0zx 52 3 the the DT cord-008426-ktn8c0zx 52 4 sequence sequence NN cord-008426-ktn8c0zx 52 5 were be VBD cord-008426-ktn8c0zx 52 6 re re VBN cord-008426-ktn8c0zx 52 7 - - VBN cord-008426-ktn8c0zx 52 8 solved solve VBN cord-008426-ktn8c0zx 52 9 by by IN cord-008426-ktn8c0zx 52 10 using use VBG cord-008426-ktn8c0zx 52 11 PCR PCR NNP cord-008426-ktn8c0zx 52 12 cycle cycle NN cord-008426-ktn8c0zx 52 13 sequencing sequencing NN cord-008426-ktn8c0zx 52 14 ( ( -LRB- cord-008426-ktn8c0zx 52 15 Murray Murray NNP cord-008426-ktn8c0zx 52 16 , , , cord-008426-ktn8c0zx 52 17 1989 1989 CD cord-008426-ktn8c0zx 52 18 ) ) -RRB- cord-008426-ktn8c0zx 52 19 or or CC cord-008426-ktn8c0zx 52 20 using use VBG cord-008426-ktn8c0zx 52 21 dITP dITP NNP cord-008426-ktn8c0zx 52 22 with with IN cord-008426-ktn8c0zx 52 23 Sequenase Sequenase NNP cord-008426-ktn8c0zx 52 24 . . . cord-008426-ktn8c0zx 53 1 The the DT cord-008426-ktn8c0zx 53 2 sequence sequence NN cord-008426-ktn8c0zx 53 3 of of IN cord-008426-ktn8c0zx 53 4 the the DT cord-008426-ktn8c0zx 53 5 5 5 CD cord-008426-ktn8c0zx 53 6 ' ' NN cord-008426-ktn8c0zx 53 7 end end NN cord-008426-ktn8c0zx 53 8 of of IN cord-008426-ktn8c0zx 53 9 the the DT cord-008426-ktn8c0zx 53 10 RNA RNA NNP cord-008426-ktn8c0zx 53 11 was be VBD cord-008426-ktn8c0zx 53 12 established establish VBN cord-008426-ktn8c0zx 53 13 by by IN cord-008426-ktn8c0zx 53 14 the the DT cord-008426-ktn8c0zx 53 15 dideoxynucleotide dideoxynucleotide NN cord-008426-ktn8c0zx 53 16 chain chain NN cord-008426-ktn8c0zx 53 17 termination termination NN cord-008426-ktn8c0zx 53 18 method method NN cord-008426-ktn8c0zx 53 19 directly directly RB cord-008426-ktn8c0zx 53 20 on on IN cord-008426-ktn8c0zx 53 21 the the DT cord-008426-ktn8c0zx 53 22 RNA RNA NNP cord-008426-ktn8c0zx 53 23 , , , cord-008426-ktn8c0zx 53 24 with with IN cord-008426-ktn8c0zx 53 25 primer primer NN cord-008426-ktn8c0zx 53 26 extensions extension NNS cord-008426-ktn8c0zx 53 27 using use VBG cord-008426-ktn8c0zx 53 28 terminal terminal JJ cord-008426-ktn8c0zx 53 29 transferase transferase NN cord-008426-ktn8c0zx 53 30 ( ( -LRB- cord-008426-ktn8c0zx 53 31 de de FW cord-008426-ktn8c0zx 53 32 Borde Borde NNP cord-008426-ktn8c0zx 53 33 et et NNP cord-008426-ktn8c0zx 53 34 al al NNP cord-008426-ktn8c0zx 53 35 . . NNP cord-008426-ktn8c0zx 53 36 , , , cord-008426-ktn8c0zx 53 37 1986 1986 CD cord-008426-ktn8c0zx 53 38 ) ) -RRB- cord-008426-ktn8c0zx 53 39 and and CC cord-008426-ktn8c0zx 53 40 oligonucleotide oligonucleotide JJ cord-008426-ktn8c0zx 53 41 primers primer NNS cord-008426-ktn8c0zx 53 42 complementary complementary JJ cord-008426-ktn8c0zx 53 43 to to IN cord-008426-ktn8c0zx 53 44 nucleotides nucleotide NNS cord-008426-ktn8c0zx 53 45 41 41 CD cord-008426-ktn8c0zx 53 46 to to TO cord-008426-ktn8c0zx 53 47 58 58 CD cord-008426-ktn8c0zx 53 48 of of IN cord-008426-ktn8c0zx 53 49 SBMV SBMV NNP cord-008426-ktn8c0zx 53 50 - - HYPH cord-008426-ktn8c0zx 53 51 B. B. NNP cord-008426-ktn8c0zx 53 52 General General NNP cord-008426-ktn8c0zx 53 53 cloning cloning NN cord-008426-ktn8c0zx 53 54 techniques technique NNS cord-008426-ktn8c0zx 53 55 were be VBD cord-008426-ktn8c0zx 53 56 as as IN cord-008426-ktn8c0zx 53 57 in in IN cord-008426-ktn8c0zx 53 58 Sambrook Sambrook NNP cord-008426-ktn8c0zx 53 59 et et NNP cord-008426-ktn8c0zx 53 60 al al NNP cord-008426-ktn8c0zx 53 61 . . . cord-008426-ktn8c0zx 54 1 ( ( -LRB- cord-008426-ktn8c0zx 54 2 1989 1989 CD cord-008426-ktn8c0zx 54 3 ) ) -RRB- cord-008426-ktn8c0zx 54 4 . . . cord-008426-ktn8c0zx 55 1 Sequence sequence NN cord-008426-ktn8c0zx 55 2 data datum NNS cord-008426-ktn8c0zx 55 3 were be VBD cord-008426-ktn8c0zx 55 4 assembled assemble VBN cord-008426-ktn8c0zx 55 5 and and CC cord-008426-ktn8c0zx 55 6 analyzed analyze VBN cord-008426-ktn8c0zx 55 7 using use VBG cord-008426-ktn8c0zx 55 8 the the DT cord-008426-ktn8c0zx 55 9 UWGCG UWGCG NNP cord-008426-ktn8c0zx 55 10 programs program NNS cord-008426-ktn8c0zx 55 11 ( ( -LRB- cord-008426-ktn8c0zx 55 12 Devereux Devereux NNP cord-008426-ktn8c0zx 55 13 etaL etaL NNP cord-008426-ktn8c0zx 55 14 , , , cord-008426-ktn8c0zx 55 15 1984 1984 CD cord-008426-ktn8c0zx 55 16 ) ) -RRB- cord-008426-ktn8c0zx 55 17 . . . cord-008426-ktn8c0zx 56 1 The the DT cord-008426-ktn8c0zx 56 2 OOM OOM NNP cord-008426-ktn8c0zx 56 3 - - HYPH cord-008426-ktn8c0zx 56 4 PARE PARE NNP cord-008426-ktn8c0zx 56 5 and and CC cord-008426-ktn8c0zx 56 6 DOTPLOT DOTPLOT NNP cord-008426-ktn8c0zx 56 7 algorithms algorithm NNS cord-008426-ktn8c0zx 56 8 were be VBD cord-008426-ktn8c0zx 56 9 used use VBN cord-008426-ktn8c0zx 56 10 for for IN cord-008426-ktn8c0zx 56 11 RNA RNA NNP cord-008426-ktn8c0zx 56 12 and and CC cord-008426-ktn8c0zx 56 13 protein protein NN cord-008426-ktn8c0zx 56 14 sequence sequence NN cord-008426-ktn8c0zx 56 15 comparisons comparison NNS cord-008426-ktn8c0zx 56 16 . . . cord-008426-ktn8c0zx 57 1 Alignment alignment NN cord-008426-ktn8c0zx 57 2 of of IN cord-008426-ktn8c0zx 57 3 homologous homologous JJ cord-008426-ktn8c0zx 57 4 nucleotide nucleotide NN cord-008426-ktn8c0zx 57 5 or or CC cord-008426-ktn8c0zx 57 6 amino amino NN cord-008426-ktn8c0zx 57 7 acid acid NN cord-008426-ktn8c0zx 57 8 sequences sequence NNS cord-008426-ktn8c0zx 57 9 were be VBD cord-008426-ktn8c0zx 57 10 obtained obtain VBN cord-008426-ktn8c0zx 57 11 using use VBG cord-008426-ktn8c0zx 57 12 the the DT cord-008426-ktn8c0zx 57 13 GAP gap NN cord-008426-ktn8c0zx 57 14 and and CC cord-008426-ktn8c0zx 57 15 BESTFIT BESTFIT NNP cord-008426-ktn8c0zx 57 16 algorithms algorithm NNS cord-008426-ktn8c0zx 57 17 and and CC cord-008426-ktn8c0zx 57 18 amino amino NN cord-008426-ktn8c0zx 57 19 acid acid NN cord-008426-ktn8c0zx 58 1 alignments alignment NNS cord-008426-ktn8c0zx 58 2 were be VBD cord-008426-ktn8c0zx 58 3 refined refine VBN cord-008426-ktn8c0zx 58 4 using use VBG cord-008426-ktn8c0zx 58 5 the the DT cord-008426-ktn8c0zx 58 6 SOMAP SOMAP NNP cord-008426-ktn8c0zx 58 7 program program NN cord-008426-ktn8c0zx 58 8 ( ( -LRB- cord-008426-ktn8c0zx 58 9 Parry Parry NNP cord-008426-ktn8c0zx 58 10 - - HYPH cord-008426-ktn8c0zx 58 11 Smith Smith NNP cord-008426-ktn8c0zx 58 12 and and CC cord-008426-ktn8c0zx 58 13 Atwood Atwood NNP cord-008426-ktn8c0zx 58 14 , , , cord-008426-ktn8c0zx 58 15 1990 1990 CD cord-008426-ktn8c0zx 58 16 ) ) -RRB- cord-008426-ktn8c0zx 58 17 . . . cord-008426-ktn8c0zx 59 1 AHOMOL AHOMOL NNP cord-008426-ktn8c0zx 59 2 was be VBD cord-008426-ktn8c0zx 59 3 used use VBN cord-008426-ktn8c0zx 59 4 for for IN cord-008426-ktn8c0zx 59 5 presentation presentation NN cord-008426-ktn8c0zx 59 6 of of IN cord-008426-ktn8c0zx 59 7 some some DT cord-008426-ktn8c0zx 59 8 alignments alignment NNS cord-008426-ktn8c0zx 59 9 . . . cord-008426-ktn8c0zx 60 1 Database database NN cord-008426-ktn8c0zx 60 2 searches search NNS cord-008426-ktn8c0zx 60 3 were be VBD cord-008426-ktn8c0zx 60 4 carried carry VBN cord-008426-ktn8c0zx 60 5 out out RP cord-008426-ktn8c0zx 60 6 either either CC cord-008426-ktn8c0zx 60 7 through through IN cord-008426-ktn8c0zx 60 8 the the DT cord-008426-ktn8c0zx 60 9 FASTA FASTA NNP cord-008426-ktn8c0zx 60 10 program program NN cord-008426-ktn8c0zx 60 11 ( ( -LRB- cord-008426-ktn8c0zx 60 12 Devereux Devereux NNP cord-008426-ktn8c0zx 60 13 et et NNP cord-008426-ktn8c0zx 60 14 al al NNP cord-008426-ktn8c0zx 60 15 . . NNP cord-008426-ktn8c0zx 60 16 , , , cord-008426-ktn8c0zx 60 17 1984 1984 CD cord-008426-ktn8c0zx 60 18 ) ) -RRB- cord-008426-ktn8c0zx 60 19 or or CC cord-008426-ktn8c0zx 60 20 through through IN cord-008426-ktn8c0zx 60 21 the the DT cord-008426-ktn8c0zx 60 22 DAPJOB DAPJOB NNP cord-008426-ktn8c0zx 60 23 program program NN cord-008426-ktn8c0zx 60 24 at at IN cord-008426-ktn8c0zx 60 25 the the DT cord-008426-ktn8c0zx 60 26 University University NNP cord-008426-ktn8c0zx 60 27 of of IN cord-008426-ktn8c0zx 60 28 Kent Kent NNP cord-008426-ktn8c0zx 60 29 in in IN cord-008426-ktn8c0zx 60 30 Canterbury Canterbury NNP cord-008426-ktn8c0zx 60 31 ( ( -LRB- cord-008426-ktn8c0zx 60 32 PROSRCH PROSRCH NNP cord-008426-ktn8c0zx 60 33 ) ) -RRB- cord-008426-ktn8c0zx 60 34 . . . cord-008426-ktn8c0zx 61 1 Nucleotide nucleotide JJ cord-008426-ktn8c0zx 61 2 sequence sequence NN cord-008426-ktn8c0zx 61 3 and and CC cord-008426-ktn8c0zx 61 4 organization organization NN cord-008426-ktn8c0zx 61 5 of of IN cord-008426-ktn8c0zx 61 6 the the DT cord-008426-ktn8c0zx 61 7 SBMV SBMV NNP cord-008426-ktn8c0zx 61 8 - - HYPH cord-008426-ktn8c0zx 61 9 B B NNP cord-008426-ktn8c0zx 61 10 genome genome NN cord-008426-ktn8c0zx 62 1 The the DT cord-008426-ktn8c0zx 62 2 main main JJ cord-008426-ktn8c0zx 62 3 strategy strategy NN cord-008426-ktn8c0zx 62 4 employed employ VBN cord-008426-ktn8c0zx 62 5 in in IN cord-008426-ktn8c0zx 62 6 the the DT cord-008426-ktn8c0zx 62 7 determination determination NN cord-008426-ktn8c0zx 62 8 of of IN cord-008426-ktn8c0zx 62 9 the the DT cord-008426-ktn8c0zx 62 10 sequence sequence NN cord-008426-ktn8c0zx 62 11 of of IN cord-008426-ktn8c0zx 62 12 SBMV SBMV NNP cord-008426-ktn8c0zx 62 13 - - HYPH cord-008426-ktn8c0zx 62 14 B B NNP cord-008426-ktn8c0zx 62 15 involved involve VBD cord-008426-ktn8c0zx 62 16 the the DT cord-008426-ktn8c0zx 62 17 use use NN cord-008426-ktn8c0zx 62 18 of of IN cord-008426-ktn8c0zx 62 19 the the DT cord-008426-ktn8c0zx 62 20 dideoxychain dideoxychain NNP cord-008426-ktn8c0zx 62 21 termination termination NN cord-008426-ktn8c0zx 62 22 method method NN cord-008426-ktn8c0zx 62 23 together together RB cord-008426-ktn8c0zx 62 24 with with IN cord-008426-ktn8c0zx 62 25 a a DT cord-008426-ktn8c0zx 62 26 selection selection NN cord-008426-ktn8c0zx 62 27 of of IN cord-008426-ktn8c0zx 62 28 overlapping overlap VBG cord-008426-ktn8c0zx 62 29 cDNA cdna NN cord-008426-ktn8c0zx 62 30 clones clone NNS cord-008426-ktn8c0zx 62 31 which which WDT cord-008426-ktn8c0zx 62 32 spanned span VBD cord-008426-ktn8c0zx 62 33 the the DT cord-008426-ktn8c0zx 62 34 full full JJ cord-008426-ktn8c0zx 62 35 - - HYPH cord-008426-ktn8c0zx 62 36 length length NN cord-008426-ktn8c0zx 62 37 of of IN cord-008426-ktn8c0zx 62 38 the the DT cord-008426-ktn8c0zx 62 39 genome genome NN cord-008426-ktn8c0zx 62 40 of of IN cord-008426-ktn8c0zx 62 41 SBMV SBMV NNP cord-008426-ktn8c0zx 62 42 - - HYPH cord-008426-ktn8c0zx 62 43 B B NNP cord-008426-ktn8c0zx 62 44 , , , cord-008426-ktn8c0zx 62 45 excluding exclude VBG cord-008426-ktn8c0zx 62 46 approximately approximately RB cord-008426-ktn8c0zx 62 47 40 40 CD cord-008426-ktn8c0zx 62 48 nucleotides nucleotide NNS cord-008426-ktn8c0zx 62 49 at at IN cord-008426-ktn8c0zx 62 50 the the DT cord-008426-ktn8c0zx 62 51 5 5 CD cord-008426-ktn8c0zx 62 52 ' ' NN cord-008426-ktn8c0zx 62 53 end end NN cord-008426-ktn8c0zx 62 54 . . . cord-008426-ktn8c0zx 63 1 The the DT cord-008426-ktn8c0zx 63 2 use use NN cord-008426-ktn8c0zx 63 3 of of IN cord-008426-ktn8c0zx 63 4 synthetic synthetic JJ cord-008426-ktn8c0zx 63 5 oligonucleotide oligonucleotide JJ cord-008426-ktn8c0zx 63 6 primers primer NNS cord-008426-ktn8c0zx 63 7 designed design VBN cord-008426-ktn8c0zx 63 8 on on IN cord-008426-ktn8c0zx 63 9 both both DT cord-008426-ktn8c0zx 63 10 strands strand NNS cord-008426-ktn8c0zx 63 11 of of IN cord-008426-ktn8c0zx 63 12 the the DT cord-008426-ktn8c0zx 63 13 clones clone NNS cord-008426-ktn8c0zx 63 14 as as IN cord-008426-ktn8c0zx 63 15 the the DT cord-008426-ktn8c0zx 63 16 sequences sequence NNS cord-008426-ktn8c0zx 63 17 were be VBD cord-008426-ktn8c0zx 63 18 elucidated elucidate VBN cord-008426-ktn8c0zx 63 19 enabled enable VBN cord-008426-ktn8c0zx 63 20 systematic systematic JJ cord-008426-ktn8c0zx 63 21 sequencing sequencing NN cord-008426-ktn8c0zx 63 22 along along IN cord-008426-ktn8c0zx 63 23 the the DT cord-008426-ktn8c0zx 63 24 whole whole JJ cord-008426-ktn8c0zx 63 25 length length NN cord-008426-ktn8c0zx 63 26 of of IN cord-008426-ktn8c0zx 63 27 the the DT cord-008426-ktn8c0zx 63 28 clone clone NN cord-008426-ktn8c0zx 63 29 . . . cord-008426-ktn8c0zx 64 1 All all DT cord-008426-ktn8c0zx 64 2 of of IN cord-008426-ktn8c0zx 64 3 the the DT cord-008426-ktn8c0zx 64 4 genome genome NN cord-008426-ktn8c0zx 64 5 was be VBD cord-008426-ktn8c0zx 64 6 sequenced sequence VBN cord-008426-ktn8c0zx 64 7 from from IN cord-008426-ktn8c0zx 64 8 at at RB cord-008426-ktn8c0zx 64 9 least least RBS cord-008426-ktn8c0zx 64 10 two two CD cord-008426-ktn8c0zx 64 11 independent independent JJ cord-008426-ktn8c0zx 64 12 clones clone NNS cord-008426-ktn8c0zx 64 13 and and CC cord-008426-ktn8c0zx 64 14 each each DT cord-008426-ktn8c0zx 64 15 clone clone NN cord-008426-ktn8c0zx 64 16 was be VBD cord-008426-ktn8c0zx 64 17 sequenced sequence VBN cord-008426-ktn8c0zx 64 18 on on IN cord-008426-ktn8c0zx 64 19 both both DT cord-008426-ktn8c0zx 64 20 strands strand NNS cord-008426-ktn8c0zx 64 21 . . . cord-008426-ktn8c0zx 65 1 Attempts attempt NNS cord-008426-ktn8c0zx 65 2 at at IN cord-008426-ktn8c0zx 65 3 cloning clone VBG cord-008426-ktn8c0zx 65 4 the the DT cord-008426-ktn8c0zx 65 5 5 5 CD cord-008426-ktn8c0zx 65 6 ' ' POS cord-008426-ktn8c0zx 65 7 terminal terminal NN cord-008426-ktn8c0zx 65 8 sequences sequence NNS cord-008426-ktn8c0zx 65 9 into into IN cord-008426-ktn8c0zx 65 10 the the DT cord-008426-ktn8c0zx 65 11 bacterial bacterial JJ cord-008426-ktn8c0zx 65 12 plasmids plasmid NNS cord-008426-ktn8c0zx 65 13 pUC18 pUC18 NNP cord-008426-ktn8c0zx 65 14 or or CC cord-008426-ktn8c0zx 65 15 pBluescript pBluescript NNP cord-008426-ktn8c0zx 65 16 proved prove VBD cord-008426-ktn8c0zx 65 17 unsuccessful unsuccessful JJ cord-008426-ktn8c0zx 65 18 and and CC cord-008426-ktn8c0zx 65 19 all all DT cord-008426-ktn8c0zx 65 20 clones clone NNS cord-008426-ktn8c0zx 65 21 obtained obtain VBD cord-008426-ktn8c0zx 65 22 lacked lack VBD cord-008426-ktn8c0zx 65 23 at at IN cord-008426-ktn8c0zx 65 24 least least RBS cord-008426-ktn8c0zx 65 25 40 40 CD cord-008426-ktn8c0zx 65 26 terminal terminal NN cord-008426-ktn8c0zx 65 27 nucleotides nucleotide NNS cord-008426-ktn8c0zx 65 28 . . . cord-008426-ktn8c0zx 66 1 The the DT cord-008426-ktn8c0zx 66 2 sequence sequence NN cord-008426-ktn8c0zx 66 3 of of IN cord-008426-ktn8c0zx 66 4 the the DT cord-008426-ktn8c0zx 66 5 5 5 CD cord-008426-ktn8c0zx 66 6 ' ' POS cord-008426-ktn8c0zx 66 7 terminal terminal JJ cord-008426-ktn8c0zx 66 8 region region NN cord-008426-ktn8c0zx 66 9 of of IN cord-008426-ktn8c0zx 66 10 the the DT cord-008426-ktn8c0zx 66 11 RNA RNA NNP cord-008426-ktn8c0zx 66 12 that that WDT cord-008426-ktn8c0zx 66 13 was be VBD cord-008426-ktn8c0zx 66 14 not not RB cord-008426-ktn8c0zx 66 15 contained contain VBN cord-008426-ktn8c0zx 66 16 within within IN cord-008426-ktn8c0zx 66 17 the the DT cord-008426-ktn8c0zx 66 18 cloned clone VBN cord-008426-ktn8c0zx 66 19 cDNA cdna NN cord-008426-ktn8c0zx 66 20 was be VBD cord-008426-ktn8c0zx 66 21 therefore therefore RB cord-008426-ktn8c0zx 66 22 analyzed analyze VBN cord-008426-ktn8c0zx 66 23 directly directly RB cord-008426-ktn8c0zx 66 24 on on IN cord-008426-ktn8c0zx 66 25 the the DT cord-008426-ktn8c0zx 66 26 viral viral JJ cord-008426-ktn8c0zx 66 27 RNA RNA NNP cord-008426-ktn8c0zx 66 28 using use VBG cord-008426-ktn8c0zx 66 29 specific specific JJ cord-008426-ktn8c0zx 66 30 oligonucleotide oligonucleotide JJ cord-008426-ktn8c0zx 66 31 primers primer NNS cord-008426-ktn8c0zx 66 32 and and CC cord-008426-ktn8c0zx 66 33 reverse reverse VB cord-008426-ktn8c0zx 66 34 transcriptase transcriptase NN cord-008426-ktn8c0zx 66 35 and and CC cord-008426-ktn8c0zx 66 36 by by IN cord-008426-ktn8c0zx 66 37 additional additional JJ cord-008426-ktn8c0zx 66 38 extension extension NN cord-008426-ktn8c0zx 66 39 using use VBG cord-008426-ktn8c0zx 66 40 terminal terminal JJ cord-008426-ktn8c0zx 66 41 transferase transferase NN cord-008426-ktn8c0zx 66 42 . . . cord-008426-ktn8c0zx 67 1 The the DT cord-008426-ktn8c0zx 67 2 reason reason NN cord-008426-ktn8c0zx 67 3 for for IN cord-008426-ktn8c0zx 67 4 the the DT cord-008426-ktn8c0zx 67 5 inability inability NN cord-008426-ktn8c0zx 67 6 to to TO cord-008426-ktn8c0zx 67 7 clone clone VB cord-008426-ktn8c0zx 67 8 the the DT cord-008426-ktn8c0zx 67 9 5 5 CD cord-008426-ktn8c0zx 67 10 ' ' POS cord-008426-ktn8c0zx 67 11 terminal terminal JJ cord-008426-ktn8c0zx 67 12 region region NN cord-008426-ktn8c0zx 67 13 in in IN cord-008426-ktn8c0zx 67 14 pBluescript pBluescript NNP cord-008426-ktn8c0zx 67 15 and and CC cord-008426-ktn8c0zx 67 16 related related JJ cord-008426-ktn8c0zx 67 17 plasmids plasmid NNS cord-008426-ktn8c0zx 67 18 is be VBZ cord-008426-ktn8c0zx 67 19 unknown unknown JJ cord-008426-ktn8c0zx 67 20 but but CC cord-008426-ktn8c0zx 67 21 it -PRON- PRP cord-008426-ktn8c0zx 67 22 did do VBD cord-008426-ktn8c0zx 67 23 prove prove VB cord-008426-ktn8c0zx 67 24 possible possible JJ cord-008426-ktn8c0zx 67 25 to to TO cord-008426-ktn8c0zx 67 26 clone clone VB cord-008426-ktn8c0zx 67 27 in in IN cord-008426-ktn8c0zx 67 28 plasmids plasmid NNS cord-008426-ktn8c0zx 67 29 in in IN cord-008426-ktn8c0zx 67 30 Escherichia Escherichia NNP cord-008426-ktn8c0zx 67 31 coil coil NN cord-008426-ktn8c0zx 67 32 behind behind IN cord-008426-ktn8c0zx 67 33 the the DT cord-008426-ktn8c0zx 67 34 cauliflower cauliflower NNP cord-008426-ktn8c0zx 67 35 mosaic mosaic NNP cord-008426-ktn8c0zx 67 36 virus virus NN cord-008426-ktn8c0zx 67 37 35S 35S NNP cord-008426-ktn8c0zx 67 38 promoter promoter NN cord-008426-ktn8c0zx 67 39 . . . cord-008426-ktn8c0zx 68 1 It -PRON- PRP cord-008426-ktn8c0zx 68 2 appeared appear VBD cord-008426-ktn8c0zx 68 3 that that IN cord-008426-ktn8c0zx 68 4 this this DT cord-008426-ktn8c0zx 68 5 portion portion NN cord-008426-ktn8c0zx 68 6 of of IN cord-008426-ktn8c0zx 68 7 the the DT cord-008426-ktn8c0zx 68 8 SBMV SBMV NNP cord-008426-ktn8c0zx 68 9 - - HYPH cord-008426-ktn8c0zx 68 10 B b NN cord-008426-ktn8c0zx 68 11 genome genome NN cord-008426-ktn8c0zx 68 12 could could MD cord-008426-ktn8c0zx 68 13 be be VB cord-008426-ktn8c0zx 68 14 toxic toxic JJ cord-008426-ktn8c0zx 68 15 to to IN cord-008426-ktn8c0zx 68 16 E. E. NNP cord-008426-ktn8c0zx 68 17 coil coil NNP cord-008426-ktn8c0zx 68 18 ceils ceils NNP cord-008426-ktn8c0zx 68 19 if if IN cord-008426-ktn8c0zx 68 20 behind behind IN cord-008426-ktn8c0zx 68 21 the the DT cord-008426-ktn8c0zx 68 22 T7 T7 NNP cord-008426-ktn8c0zx 68 23 or or CC cord-008426-ktn8c0zx 68 24 T3 T3 NNP cord-008426-ktn8c0zx 68 25 promoters promoter NNS cord-008426-ktn8c0zx 68 26 . . . cord-008426-ktn8c0zx 69 1 The the DT cord-008426-ktn8c0zx 69 2 3 3 CD cord-008426-ktn8c0zx 69 3 ' ' POS cord-008426-ktn8c0zx 69 4 terminal terminal JJ cord-008426-ktn8c0zx 69 5 sequence sequence NN cord-008426-ktn8c0zx 69 6 was be VBD cord-008426-ktn8c0zx 69 7 obtained obtain VBN cord-008426-ktn8c0zx 69 8 from from IN cord-008426-ktn8c0zx 69 9 independent independent JJ cord-008426-ktn8c0zx 69 10 poly(A)-tailed poly(A)-tailed NNP cord-008426-ktn8c0zx 69 11 cDNA cdna NN cord-008426-ktn8c0zx 69 12 clones clone NNS cord-008426-ktn8c0zx 69 13 and and CC cord-008426-ktn8c0zx 69 14 shows show VBZ cord-008426-ktn8c0zx 69 15 identity identity NN cord-008426-ktn8c0zx 69 16 in in IN cord-008426-ktn8c0zx 69 17 all all DT cord-008426-ktn8c0zx 69 18 but but CC cord-008426-ktn8c0zx 69 19 eight eight CD cord-008426-ktn8c0zx 69 20 bases basis NNS cord-008426-ktn8c0zx 69 21 when when WRB cord-008426-ktn8c0zx 69 22 compared compare VBN cord-008426-ktn8c0zx 69 23 to to IN cord-008426-ktn8c0zx 69 24 the the DT cord-008426-ktn8c0zx 69 25 published publish VBN cord-008426-ktn8c0zx 69 26 393 393 CD cord-008426-ktn8c0zx 69 27 nucleotide nucleotide NN cord-008426-ktn8c0zx 69 28 terminal terminal JJ cord-008426-ktn8c0zx 69 29 sequence sequence NN cord-008426-ktn8c0zx 69 30 of of IN cord-008426-ktn8c0zx 69 31 SBMV SBMV NNP cord-008426-ktn8c0zx 69 32 - - HYPH cord-008426-ktn8c0zx 69 33 B B NNP cord-008426-ktn8c0zx 70 1 ( ( -LRB- cord-008426-ktn8c0zx 70 2 Mang Mang NNP cord-008426-ktn8c0zx 70 3 et et NNP cord-008426-ktn8c0zx 70 4 aL aL NNP cord-008426-ktn8c0zx 70 5 , , , cord-008426-ktn8c0zx 70 6 1982 1982 CD cord-008426-ktn8c0zx 70 7 ) ) -RRB- cord-008426-ktn8c0zx 70 8 . . . cord-008426-ktn8c0zx 71 1 Six six CD cord-008426-ktn8c0zx 71 2 of of IN cord-008426-ktn8c0zx 71 3 the the DT cord-008426-ktn8c0zx 71 4 changes change NNS cord-008426-ktn8c0zx 71 5 were be VBD cord-008426-ktn8c0zx 71 6 U U NNP cord-008426-ktn8c0zx 71 7 - - HYPH cord-008426-ktn8c0zx 71 8 C C NNP cord-008426-ktn8c0zx 71 9 , , , cord-008426-ktn8c0zx 71 10 C C NNP cord-008426-ktn8c0zx 71 11 - - HYPH cord-008426-ktn8c0zx 71 12 U U NNP cord-008426-ktn8c0zx 71 13 , , , cord-008426-ktn8c0zx 71 14 A A NNP cord-008426-ktn8c0zx 71 15 - - HYPH cord-008426-ktn8c0zx 71 16 U U NNP cord-008426-ktn8c0zx 71 17 , , , cord-008426-ktn8c0zx 71 18 or or CC cord-008426-ktn8c0zx 71 19 U U NNP cord-008426-ktn8c0zx 71 20 - - HYPH cord-008426-ktn8c0zx 71 21 A a NN cord-008426-ktn8c0zx 71 22 substitutions substitution NNS cord-008426-ktn8c0zx 71 23 , , , cord-008426-ktn8c0zx 71 24 the the DT cord-008426-ktn8c0zx 71 25 3 3 CD cord-008426-ktn8c0zx 71 26 ' ' NN cord-008426-ktn8c0zx 71 27 nucleotide nucleotide NN cord-008426-ktn8c0zx 71 28 was be VBD cord-008426-ktn8c0zx 71 29 a a DT cord-008426-ktn8c0zx 71 30 G g NN cord-008426-ktn8c0zx 71 31 - - HYPH cord-008426-ktn8c0zx 71 32 U u NN cord-008426-ktn8c0zx 71 33 substitution substitution NN cord-008426-ktn8c0zx 71 34 and and CC cord-008426-ktn8c0zx 71 35 nucleotide nucleotide JJ cord-008426-ktn8c0zx 71 36 91 91 CD cord-008426-ktn8c0zx 71 37 on on IN cord-008426-ktn8c0zx 71 38 the the DT cord-008426-ktn8c0zx 71 39 Mang Mang NNP cord-008426-ktn8c0zx 71 40 eta/. eta/. NN cord-008426-ktn8c0zx 71 41 ( ( -LRB- cord-008426-ktn8c0zx 71 42 1982 1982 CD cord-008426-ktn8c0zx 71 43 ) ) -RRB- cord-008426-ktn8c0zx 71 44 sequence sequence NN cord-008426-ktn8c0zx 71 45 was be VBD cord-008426-ktn8c0zx 71 46 absent absent JJ cord-008426-ktn8c0zx 71 47 in in IN cord-008426-ktn8c0zx 71 48 our -PRON- PRP$ cord-008426-ktn8c0zx 71 49 sequence sequence NN cord-008426-ktn8c0zx 71 50 . . . cord-008426-ktn8c0zx 72 1 The the DT cord-008426-ktn8c0zx 72 2 differences difference NNS cord-008426-ktn8c0zx 72 3 were be VBD cord-008426-ktn8c0zx 72 4 conserved conserve VBN cord-008426-ktn8c0zx 72 5 in in IN cord-008426-ktn8c0zx 72 6 all all PDT cord-008426-ktn8c0zx 72 7 the the DT cord-008426-ktn8c0zx 72 8 clones clone NNS cord-008426-ktn8c0zx 72 9 that that WDT cord-008426-ktn8c0zx 72 10 were be VBD cord-008426-ktn8c0zx 72 11 sequenced sequence VBN cord-008426-ktn8c0zx 72 12 and and CC cord-008426-ktn8c0zx 72 13 could could MD cord-008426-ktn8c0zx 72 14 represent represent VB cord-008426-ktn8c0zx 72 15 isolate isolate VB cord-008426-ktn8c0zx 72 16 heterogeneity heterogeneity NN cord-008426-ktn8c0zx 72 17 rather rather RB cord-008426-ktn8c0zx 72 18 than than IN cord-008426-ktn8c0zx 72 19 sequencing sequence VBG cord-008426-ktn8c0zx 72 20 artifacts artifact NNS cord-008426-ktn8c0zx 72 21 . . . cord-008426-ktn8c0zx 73 1 The the DT cord-008426-ktn8c0zx 73 2 complete complete JJ cord-008426-ktn8c0zx 73 3 nucleotide nucleotide JJ cord-008426-ktn8c0zx 73 4 sequence sequence NN cord-008426-ktn8c0zx 73 5 and and CC cord-008426-ktn8c0zx 73 6 the the DT cord-008426-ktn8c0zx 73 7 deduced deduce VBN cord-008426-ktn8c0zx 73 8 amino amino NN cord-008426-ktn8c0zx 73 9 acid acid NN cord-008426-ktn8c0zx 73 10 sequence sequence NN cord-008426-ktn8c0zx 73 11 of of IN cord-008426-ktn8c0zx 73 12 the the DT cord-008426-ktn8c0zx 73 13 predicted predict VBN cord-008426-ktn8c0zx 73 14 translation translation NN cord-008426-ktn8c0zx 73 15 products product NNS cord-008426-ktn8c0zx 73 16 of of IN cord-008426-ktn8c0zx 73 17 SBMV SBMV NNP cord-008426-ktn8c0zx 73 18 - - HYPH cord-008426-ktn8c0zx 73 19 B B NNP cord-008426-ktn8c0zx 73 20 are be VBP cord-008426-ktn8c0zx 73 21 shown show VBN cord-008426-ktn8c0zx 73 22 in in IN cord-008426-ktn8c0zx 73 23 Fig Fig NNP cord-008426-ktn8c0zx 73 24 . . . cord-008426-ktn8c0zx 74 1 2 2 LS cord-008426-ktn8c0zx 74 2 . . . cord-008426-ktn8c0zx 75 1 The the DT cord-008426-ktn8c0zx 75 2 genome genome NN cord-008426-ktn8c0zx 75 3 contains contain VBZ cord-008426-ktn8c0zx 75 4 4109 4109 CD cord-008426-ktn8c0zx 75 5 nucleotides nucleotide NNS cord-008426-ktn8c0zx 75 6 and and CC cord-008426-ktn8c0zx 75 7 thus thus RB cord-008426-ktn8c0zx 75 8 is be VBZ cord-008426-ktn8c0zx 75 9 slightly slightly RB cord-008426-ktn8c0zx 75 10 shorter short JJR cord-008426-ktn8c0zx 75 11 than than IN cord-008426-ktn8c0zx 75 12 that that DT cord-008426-ktn8c0zx 75 13 of of IN cord-008426-ktn8c0zx 75 14 SBMV SBMV NNP cord-008426-ktn8c0zx 75 15 - - HYPH cord-008426-ktn8c0zx 75 16 C. C. NNP cord-008426-ktn8c0zx 76 1 The the DT cord-008426-ktn8c0zx 76 2 base base NN cord-008426-ktn8c0zx 76 3 composition composition NN cord-008426-ktn8c0zx 76 4 of of IN cord-008426-ktn8c0zx 76 5 SBMV SBMV NNP cord-008426-ktn8c0zx 76 6 - - HYPH cord-008426-ktn8c0zx 76 7 B B NNP cord-008426-ktn8c0zx 76 8 RNA RNA NNP cord-008426-ktn8c0zx 76 9 comprised comprise VBD cord-008426-ktn8c0zx 76 10 23.7 23.7 CD cord-008426-ktn8c0zx 76 11 % % NN cord-008426-ktn8c0zx 76 12 A a NN cord-008426-ktn8c0zx 76 13 , , , cord-008426-ktn8c0zx 76 14 24.5 24.5 CD cord-008426-ktn8c0zx 76 15 % % NN cord-008426-ktn8c0zx 76 16 C c NN cord-008426-ktn8c0zx 76 17 , , , cord-008426-ktn8c0zx 76 18 25.6 25.6 CD cord-008426-ktn8c0zx 76 19 % % NN cord-008426-ktn8c0zx 76 20 G g NN cord-008426-ktn8c0zx 76 21 , , , cord-008426-ktn8c0zx 76 22 and and CC cord-008426-ktn8c0zx 76 23 26.0 26.0 CD cord-008426-ktn8c0zx 76 24 % % NN cord-008426-ktn8c0zx 76 25 U u NN cord-008426-ktn8c0zx 76 26 residues residue NNS cord-008426-ktn8c0zx 76 27 , , , cord-008426-ktn8c0zx 76 28 which which WDT cord-008426-ktn8c0zx 76 29 is be VBZ cord-008426-ktn8c0zx 76 30 similar similar JJ cord-008426-ktn8c0zx 76 31 to to IN cord-008426-ktn8c0zx 76 32 that that DT cord-008426-ktn8c0zx 76 33 reported report VBN cord-008426-ktn8c0zx 76 34 from from IN cord-008426-ktn8c0zx 76 35 direct direct JJ cord-008426-ktn8c0zx 76 36 analysis analysis NN cord-008426-ktn8c0zx 77 1 ( ( -LRB- cord-008426-ktn8c0zx 77 2 Tremaine Tremaine NNP cord-008426-ktn8c0zx 77 3 , , , cord-008426-ktn8c0zx 77 4 1966 1966 CD cord-008426-ktn8c0zx 77 5 ; ; : cord-008426-ktn8c0zx 77 6 Ghabrial Ghabrial NNP cord-008426-ktn8c0zx 77 7 et et NNP cord-008426-ktn8c0zx 77 8 aL aL NNP cord-008426-ktn8c0zx 77 9 , , , cord-008426-ktn8c0zx 77 10 1967 1967 CD cord-008426-ktn8c0zx 77 11 ) ) -RRB- cord-008426-ktn8c0zx 77 12 , , , cord-008426-ktn8c0zx 77 13 and and CC cord-008426-ktn8c0zx 77 14 the the DT cord-008426-ktn8c0zx 77 15 RNA RNA NNP cord-008426-ktn8c0zx 77 16 has have VBZ cord-008426-ktn8c0zx 77 17 an an DT cord-008426-ktn8c0zx 77 18 overall overall JJ cord-008426-ktn8c0zx 77 19 sequence sequence NN cord-008426-ktn8c0zx 77 20 identity identity NN cord-008426-ktn8c0zx 77 21 with with IN cord-008426-ktn8c0zx 77 22 SBMV SBMV NNP cord-008426-ktn8c0zx 77 23 - - HYPH cord-008426-ktn8c0zx 77 24 C C NNP cord-008426-ktn8c0zx 77 25 of of IN cord-008426-ktn8c0zx 77 26 only only RB cord-008426-ktn8c0zx 77 27 55 55 CD cord-008426-ktn8c0zx 77 28 % % NN cord-008426-ktn8c0zx 77 29 . . . cord-008426-ktn8c0zx 78 1 The the DT cord-008426-ktn8c0zx 78 2 identity identity NN cord-008426-ktn8c0zx 78 3 of of IN cord-008426-ktn8c0zx 78 4 SBMV SBMV NNP cord-008426-ktn8c0zx 78 5 - - HYPH cord-008426-ktn8c0zx 78 6 B B NNP cord-008426-ktn8c0zx 78 7 with with IN cord-008426-ktn8c0zx 78 8 RYMV RYMV NNP cord-008426-ktn8c0zx 78 9 at at IN cord-008426-ktn8c0zx 78 10 the the DT cord-008426-ktn8c0zx 78 11 nucleotide nucleotide JJ cord-008426-ktn8c0zx 78 12 level level NN cord-008426-ktn8c0zx 78 13 was be VBD cord-008426-ktn8c0zx 78 14 45.1 45.1 CD cord-008426-ktn8c0zx 78 15 % % NN cord-008426-ktn8c0zx 78 16 ; ; , cord-008426-ktn8c0zx 78 17 sequence sequence NN cord-008426-ktn8c0zx 78 18 homology homology NN cord-008426-ktn8c0zx 78 19 between between IN cord-008426-ktn8c0zx 78 20 RYMV RYMV NNP cord-008426-ktn8c0zx 78 21 and and CC cord-008426-ktn8c0zx 78 22 SBMV SBMV NNP cord-008426-ktn8c0zx 78 23 - - HYPH cord-008426-ktn8c0zx 78 24 C C NNP cord-008426-ktn8c0zx 78 25 was be VBD cord-008426-ktn8c0zx 78 26 45.6 45.6 CD cord-008426-ktn8c0zx 78 27 % % NN cord-008426-ktn8c0zx 78 28 . . . cord-008426-ktn8c0zx 79 1 Computer computer NN cord-008426-ktn8c0zx 79 2 analysis analysis NN cord-008426-ktn8c0zx 79 3 of of IN cord-008426-ktn8c0zx 79 4 SBMV SBMV NNP cord-008426-ktn8c0zx 79 5 - - HYPH cord-008426-ktn8c0zx 79 6 B B NNP cord-008426-ktn8c0zx 79 7 RNA RNA NNP cord-008426-ktn8c0zx 79 8 and and CC cord-008426-ktn8c0zx 79 9 its -PRON- PRP$ cord-008426-ktn8c0zx 79 10 complementary complementary JJ cord-008426-ktn8c0zx 79 11 strand strand NN cord-008426-ktn8c0zx 79 12 in in IN cord-008426-ktn8c0zx 79 13 all all DT cord-008426-ktn8c0zx 79 14 six six CD cord-008426-ktn8c0zx 79 15 possible possible JJ cord-008426-ktn8c0zx 79 16 reading read VBG cord-008426-ktn8c0zx 79 17 frames frame NNS cord-008426-ktn8c0zx 79 18 revealed reveal VBD cord-008426-ktn8c0zx 79 19 three three CD cord-008426-ktn8c0zx 79 20 potential potential JJ cord-008426-ktn8c0zx 79 21 open open JJ cord-008426-ktn8c0zx 79 22 reading reading NN cord-008426-ktn8c0zx 79 23 frames frame NNS cord-008426-ktn8c0zx 79 24 ( ( -LRB- cord-008426-ktn8c0zx 79 25 ORFs ORFs NNP cord-008426-ktn8c0zx 79 26 ) ) -RRB- cord-008426-ktn8c0zx 79 27 of of IN cord-008426-ktn8c0zx 79 28 > > $ cord-008426-ktn8c0zx 79 29 10 10 CD cord-008426-ktn8c0zx 79 30 kDa kDa NNS cord-008426-ktn8c0zx 79 31 on on IN cord-008426-ktn8c0zx 79 32 the the DT cord-008426-ktn8c0zx 79 33 messenger messenger NN cord-008426-ktn8c0zx 79 34 - - HYPH cord-008426-ktn8c0zx 79 35 sense sense NN cord-008426-ktn8c0zx 79 36 strand strand NN cord-008426-ktn8c0zx 79 37 of of IN cord-008426-ktn8c0zx 79 38 the the DT cord-008426-ktn8c0zx 79 39 RNA RNA NNP cord-008426-ktn8c0zx 79 40 , , , cord-008426-ktn8c0zx 79 41 referred refer VBD cord-008426-ktn8c0zx 79 42 to to IN cord-008426-ktn8c0zx 79 43 as as IN cord-008426-ktn8c0zx 79 44 ORF ORF NNP cord-008426-ktn8c0zx 79 45 1 1 CD cord-008426-ktn8c0zx 79 46 to to IN cord-008426-ktn8c0zx 79 47 ORF ORF NNP cord-008426-ktn8c0zx 79 48 3 3 CD cord-008426-ktn8c0zx 79 49 in in IN cord-008426-ktn8c0zx 79 50 order order NN cord-008426-ktn8c0zx 79 51 of of IN cord-008426-ktn8c0zx 79 52 their -PRON- PRP$ cord-008426-ktn8c0zx 79 53 proximity proximity NN cord-008426-ktn8c0zx 79 54 to to IN cord-008426-ktn8c0zx 79 55 the the DT cord-008426-ktn8c0zx 79 56 5 5 CD cord-008426-ktn8c0zx 79 57 ' ' NN cord-008426-ktn8c0zx 79 58 end end NN cord-008426-ktn8c0zx 79 59 of of IN cord-008426-ktn8c0zx 79 60 the the DT cord-008426-ktn8c0zx 79 61 sequence sequence NN cord-008426-ktn8c0zx 79 62 ( ( -LRB- cord-008426-ktn8c0zx 79 63 Fig Fig NNP cord-008426-ktn8c0zx 79 64 . . . cord-008426-ktn8c0zx 79 65 1 1 CD cord-008426-ktn8c0zx 79 66 ) ) -RRB- cord-008426-ktn8c0zx 79 67 ; ; : cord-008426-ktn8c0zx 79 68 there there EX cord-008426-ktn8c0zx 79 69 were be VBD cord-008426-ktn8c0zx 79 70 no no DT cord-008426-ktn8c0zx 79 71 0RFs 0rfs CD cord-008426-ktn8c0zx 79 72 of of IN cord-008426-ktn8c0zx 79 73 > > XX cord-008426-ktn8c0zx 79 74 10 10 CD cord-008426-ktn8c0zx 79 75 kDa kDa NNS cord-008426-ktn8c0zx 79 76 on on IN cord-008426-ktn8c0zx 79 77 the the DT cord-008426-ktn8c0zx 79 78 complementary complementary JJ cord-008426-ktn8c0zx 79 79 strand strand NN cord-008426-ktn8c0zx 79 80 . . . cord-008426-ktn8c0zx 80 1 Thus thus RB cord-008426-ktn8c0zx 80 2 , , , cord-008426-ktn8c0zx 80 3 the the DT cord-008426-ktn8c0zx 80 4 overall overall JJ cord-008426-ktn8c0zx 80 5 genome genome NN cord-008426-ktn8c0zx 80 6 arrangement arrangement NN cord-008426-ktn8c0zx 80 7 of of IN cord-008426-ktn8c0zx 80 8 ORFs ORFs NNP cord-008426-ktn8c0zx 80 9 1 1 CD cord-008426-ktn8c0zx 80 10 , , , cord-008426-ktn8c0zx 80 11 2 2 CD cord-008426-ktn8c0zx 80 12 , , , cord-008426-ktn8c0zx 80 13 and and CC cord-008426-ktn8c0zx 80 14 3 3 CD cord-008426-ktn8c0zx 80 15 appears appear VBZ cord-008426-ktn8c0zx 80 16 similar similar JJ cord-008426-ktn8c0zx 80 17 to to IN cord-008426-ktn8c0zx 80 18 ORFs ORFs NNP cord-008426-ktn8c0zx 80 19 1 1 CD cord-008426-ktn8c0zx 80 20 , , , cord-008426-ktn8c0zx 80 21 2 2 CD cord-008426-ktn8c0zx 80 22 , , , cord-008426-ktn8c0zx 80 23 and and CC cord-008426-ktn8c0zx 80 24 4 4 CD cord-008426-ktn8c0zx 80 25 of of IN cord-008426-ktn8c0zx 80 26 SBMV SBMV NNP cord-008426-ktn8c0zx 80 27 - - HYPH cord-008426-ktn8c0zx 80 28 C C NNP cord-008426-ktn8c0zx 81 1 ( ( -LRB- cord-008426-ktn8c0zx 81 2 Fig Fig NNP cord-008426-ktn8c0zx 81 3 . . NNP cord-008426-ktn8c0zx 81 4 1 1 CD cord-008426-ktn8c0zx 81 5 ) ) -RRB- cord-008426-ktn8c0zx 81 6 and and CC cord-008426-ktn8c0zx 81 7 RYMV RYMV NNP cord-008426-ktn8c0zx 81 8 . . . cord-008426-ktn8c0zx 82 1 However however RB cord-008426-ktn8c0zx 82 2 , , , cord-008426-ktn8c0zx 82 3 there there EX cord-008426-ktn8c0zx 82 4 are be VBP cord-008426-ktn8c0zx 82 5 differences difference NNS cord-008426-ktn8c0zx 82 6 in in IN cord-008426-ktn8c0zx 82 7 detail detail NN cord-008426-ktn8c0zx 82 8 . . . cord-008426-ktn8c0zx 83 1 In in IN cord-008426-ktn8c0zx 83 2 SBMV SBMV NNP cord-008426-ktn8c0zx 83 3 - - HYPH cord-008426-ktn8c0zx 83 4 B B NNP cord-008426-ktn8c0zx 83 5 and and CC cord-008426-ktn8c0zx 83 6 RYMV RYMV NNP cord-008426-ktn8c0zx 83 7 there there EX cord-008426-ktn8c0zx 83 8 are be VBP cord-008426-ktn8c0zx 83 9 intercistronic intercistronic JJ cord-008426-ktn8c0zx 83 10 regions region NNS cord-008426-ktn8c0zx 83 11 between between IN cord-008426-ktn8c0zx 83 12 ORFs ORFs NNP cord-008426-ktn8c0zx 83 13 1 1 CD cord-008426-ktn8c0zx 83 14 and and CC cord-008426-ktn8c0zx 83 15 2 2 CD cord-008426-ktn8c0zx 83 16 whereas whereas IN cord-008426-ktn8c0zx 83 17 these these DT cord-008426-ktn8c0zx 83 18 ORFs orf NNS cord-008426-ktn8c0zx 83 19 overlap overlap VBP cord-008426-ktn8c0zx 83 20 in in IN cord-008426-ktn8c0zx 83 21 SBMV SBMV NNP cord-008426-ktn8c0zx 83 22 - - HYPH cord-008426-ktn8c0zx 83 23 C. C. NNP cord-008426-ktn8c0zx 84 1 In in IN cord-008426-ktn8c0zx 84 2 SBMV SBMV NNP cord-008426-ktn8c0zx 84 3 - - HYPH cord-008426-ktn8c0zx 84 4 B B NNP cord-008426-ktn8c0zx 84 5 there there EX cord-008426-ktn8c0zx 84 6 is be VBZ cord-008426-ktn8c0zx 84 7 also also RB cord-008426-ktn8c0zx 84 8 an an DT cord-008426-ktn8c0zx 84 9 intercistronic intercistronic JJ cord-008426-ktn8c0zx 84 10 region region NN cord-008426-ktn8c0zx 84 11 between between IN cord-008426-ktn8c0zx 84 12 ORFs ORFs NNP cord-008426-ktn8c0zx 84 13 2 2 CD cord-008426-ktn8c0zx 84 14 and and CC cord-008426-ktn8c0zx 84 15 3 3 CD cord-008426-ktn8c0zx 84 16 whereas whereas IN cord-008426-ktn8c0zx 84 17 the the DT cord-008426-ktn8c0zx 84 18 analogous analogous JJ cord-008426-ktn8c0zx 84 19 ORFs orfs NN cord-008426-ktn8c0zx 84 20 of of IN cord-008426-ktn8c0zx 84 21 SBMV SBMV NNP cord-008426-ktn8c0zx 84 22 - - HYPH cord-008426-ktn8c0zx 84 23 C C NNP cord-008426-ktn8c0zx 84 24 and and CC cord-008426-ktn8c0zx 84 25 RYMV RYMV NNP cord-008426-ktn8c0zx 84 26 ( ( -LRB- cord-008426-ktn8c0zx 84 27 ORFs ORFs NNP cord-008426-ktn8c0zx 84 28 2 2 CD cord-008426-ktn8c0zx 84 29 and and CC cord-008426-ktn8c0zx 84 30 4 4 LS cord-008426-ktn8c0zx 84 31 ) ) -RRB- cord-008426-ktn8c0zx 84 32 overlap overlap VB cord-008426-ktn8c0zx 84 33 . . . cord-008426-ktn8c0zx 85 1 No no DT cord-008426-ktn8c0zx 85 2 potential potential JJ cord-008426-ktn8c0zx 85 3 internal internal JJ cord-008426-ktn8c0zx 85 4 coding coding NN cord-008426-ktn8c0zx 85 5 region region NN cord-008426-ktn8c0zx 85 6 within within IN cord-008426-ktn8c0zx 85 7 ORF ORF NNP cord-008426-ktn8c0zx 85 8 2 2 CD cord-008426-ktn8c0zx 85 9 similar similar JJ cord-008426-ktn8c0zx 85 10 to to IN cord-008426-ktn8c0zx 85 11 the the DT cord-008426-ktn8c0zx 85 12 ORFs ORFs NNP cord-008426-ktn8c0zx 85 13 3 3 CD cord-008426-ktn8c0zx 85 14 of of IN cord-008426-ktn8c0zx 85 15 SBMV SBMV NNP cord-008426-ktn8c0zx 85 16 - - HYPH cord-008426-ktn8c0zx 85 17 C C NNP cord-008426-ktn8c0zx 85 18 and and CC cord-008426-ktn8c0zx 85 19 RYMV RYMV NNP cord-008426-ktn8c0zx 85 20 could could MD cord-008426-ktn8c0zx 85 21 be be VB cord-008426-ktn8c0zx 85 22 identified identify VBN cord-008426-ktn8c0zx 85 23 in in IN cord-008426-ktn8c0zx 86 1 SBMV SBMV NNP cord-008426-ktn8c0zx 86 2 - - HYPH cord-008426-ktn8c0zx 86 3 B. B. NNP cord-008426-ktn8c0zx 86 4 An an DT cord-008426-ktn8c0zx 86 5 increasing increase VBG cord-008426-ktn8c0zx 86 6 number number NN cord-008426-ktn8c0zx 86 7 of of IN cord-008426-ktn8c0zx 86 8 viral viral JJ cord-008426-ktn8c0zx 86 9 genes gene NNS cord-008426-ktn8c0zx 86 10 are be VBP cord-008426-ktn8c0zx 86 11 now now RB cord-008426-ktn8c0zx 86 12 known know VBN cord-008426-ktn8c0zx 86 13 to to TO cord-008426-ktn8c0zx 86 14 utilize utilize VB cord-008426-ktn8c0zx 86 15 non non JJ cord-008426-ktn8c0zx 86 16 - - JJ cord-008426-ktn8c0zx 86 17 AUG AUG NNP cord-008426-ktn8c0zx 86 18 codons codon NNS cord-008426-ktn8c0zx 86 19 , , , cord-008426-ktn8c0zx 86 20 which which WDT cord-008426-ktn8c0zx 86 21 allow allow VBP cord-008426-ktn8c0zx 86 22 translation translation NN cord-008426-ktn8c0zx 86 23 of of IN cord-008426-ktn8c0zx 86 24 multiple multiple JJ cord-008426-ktn8c0zx 86 25 related related JJ cord-008426-ktn8c0zx 86 26 proteins protein NNS cord-008426-ktn8c0zx 86 27 from from IN cord-008426-ktn8c0zx 86 28 a a DT cord-008426-ktn8c0zx 86 29 single single JJ cord-008426-ktn8c0zx 86 30 ORF orf NN cord-008426-ktn8c0zx 86 31 ( ( -LRB- cord-008426-ktn8c0zx 86 32 Beccera Beccera NNP cord-008426-ktn8c0zx 86 33 et et NNP cord-008426-ktn8c0zx 86 34 aL aL NNP cord-008426-ktn8c0zx 86 35 , , , cord-008426-ktn8c0zx 86 36 1985 1985 CD cord-008426-ktn8c0zx 86 37 ; ; : cord-008426-ktn8c0zx 87 1 Prats Prats NNP cord-008426-ktn8c0zx 87 2 et et NNP cord-008426-ktn8c0zx 87 3 aL aL NNP cord-008426-ktn8c0zx 87 4 , , , cord-008426-ktn8c0zx 87 5 1989 1989 CD cord-008426-ktn8c0zx 87 6 ; ; : cord-008426-ktn8c0zx 87 7 Gordon Gordon NNP cord-008426-ktn8c0zx 87 8 et et NNP cord-008426-ktn8c0zx 87 9 aL aL NNP cord-008426-ktn8c0zx 87 10 , , , cord-008426-ktn8c0zx 87 11 1992 1992 CD cord-008426-ktn8c0zx 87 12 ) ) -RRB- cord-008426-ktn8c0zx 87 13 . . . cord-008426-ktn8c0zx 88 1 The the DT cord-008426-ktn8c0zx 88 2 efficiency efficiency NN cord-008426-ktn8c0zx 88 3 of of IN cord-008426-ktn8c0zx 88 4 translation translation NN cord-008426-ktn8c0zx 88 5 is be VBZ cord-008426-ktn8c0zx 88 6 generally generally RB cord-008426-ktn8c0zx 88 7 much much RB cord-008426-ktn8c0zx 88 8 lower low JJR cord-008426-ktn8c0zx 88 9 than than IN cord-008426-ktn8c0zx 88 10 initiation initiation NN cord-008426-ktn8c0zx 88 11 at at IN cord-008426-ktn8c0zx 88 12 AUG AUG NNP cord-008426-ktn8c0zx 88 13 . . . cord-008426-ktn8c0zx 89 1 However however RB cord-008426-ktn8c0zx 89 2 , , , cord-008426-ktn8c0zx 89 3 even even RB cord-008426-ktn8c0zx 89 4 with with IN cord-008426-ktn8c0zx 89 5 these these DT cord-008426-ktn8c0zx 89 6 initiation initiation NN cord-008426-ktn8c0zx 89 7 codons codon NNS cord-008426-ktn8c0zx 89 8 no no DT cord-008426-ktn8c0zx 89 9 ORF ORF NNP cord-008426-ktn8c0zx 89 10 could could MD cord-008426-ktn8c0zx 89 11 be be VB cord-008426-ktn8c0zx 89 12 defined define VBN cord-008426-ktn8c0zx 89 13 which which WDT cord-008426-ktn8c0zx 89 14 was be VBD cord-008426-ktn8c0zx 89 15 similar similar JJ cord-008426-ktn8c0zx 89 16 to to IN cord-008426-ktn8c0zx 89 17 SBMV SBMV NNP cord-008426-ktn8c0zx 89 18 - - HYPH cord-008426-ktn8c0zx 89 19 C C NNP cord-008426-ktn8c0zx 89 20 ORF3 ORF3 NNP cord-008426-ktn8c0zx 89 21 . . . cord-008426-ktn8c0zx 90 1 An an DT cord-008426-ktn8c0zx 90 2 A a NN cord-008426-ktn8c0zx 90 3 + + SYM cord-008426-ktn8c0zx 90 4 U u NN cord-008426-ktn8c0zx 90 5 rich rich JJ cord-008426-ktn8c0zx 90 6 ( ( -LRB- cord-008426-ktn8c0zx 90 7 61 61 CD cord-008426-ktn8c0zx 90 8 % % NN cord-008426-ktn8c0zx 90 9 ) ) -RRB- cord-008426-ktn8c0zx 91 1 5 5 LS cord-008426-ktn8c0zx 91 2 ' ' POS cord-008426-ktn8c0zx 91 3 noncoding noncoding JJ cord-008426-ktn8c0zx 91 4 region region NN cord-008426-ktn8c0zx 91 5 of of IN cord-008426-ktn8c0zx 91 6 92 92 CD cord-008426-ktn8c0zx 91 7 bases basis NNS cord-008426-ktn8c0zx 91 8 precedes precede VBZ cord-008426-ktn8c0zx 91 9 the the DT cord-008426-ktn8c0zx 91 10 first first JJ cord-008426-ktn8c0zx 91 11 ORF ORF NNP cord-008426-ktn8c0zx 91 12 of of IN cord-008426-ktn8c0zx 91 13 SBMV SBMV NNP cord-008426-ktn8c0zx 91 14 - - HYPH cord-008426-ktn8c0zx 91 15 B. B. NNP cord-008426-ktn8c0zx 92 1 The the DT cord-008426-ktn8c0zx 92 2 leader leader NN cord-008426-ktn8c0zx 92 3 sequence sequence NN cord-008426-ktn8c0zx 92 4 of of IN cord-008426-ktn8c0zx 92 5 SBMV SBMV NNP cord-008426-ktn8c0zx 92 6 - - HYPH cord-008426-ktn8c0zx 92 7 B B NNP cord-008426-ktn8c0zx 92 8 was be VBD cord-008426-ktn8c0zx 92 9 considerably considerably RB cord-008426-ktn8c0zx 92 10 longer long JJR cord-008426-ktn8c0zx 92 11 than than IN cord-008426-ktn8c0zx 92 12 that that DT cord-008426-ktn8c0zx 92 13 of of IN cord-008426-ktn8c0zx 92 14 SBMV SBMV NNP cord-008426-ktn8c0zx 92 15 - - HYPH cord-008426-ktn8c0zx 92 16 C C NNP cord-008426-ktn8c0zx 92 17 ( ( -LRB- cord-008426-ktn8c0zx 92 18 46 46 CD cord-008426-ktn8c0zx 92 19 fit fit JJ cord-008426-ktn8c0zx 92 20 ) ) -RRB- cord-008426-ktn8c0zx 92 21 and and CC cord-008426-ktn8c0zx 92 22 of of IN cord-008426-ktn8c0zx 92 23 a a DT cord-008426-ktn8c0zx 92 24 similar similar JJ cord-008426-ktn8c0zx 92 25 length length NN cord-008426-ktn8c0zx 92 26 to to IN cord-008426-ktn8c0zx 92 27 that that DT cord-008426-ktn8c0zx 92 28 of of IN cord-008426-ktn8c0zx 92 29 RYMV RYMV NNP cord-008426-ktn8c0zx 92 30 ( ( -LRB- cord-008426-ktn8c0zx 92 31 79 79 CD cord-008426-ktn8c0zx 92 32 nt nt NN cord-008426-ktn8c0zx 92 33 ) ) -RRB- cord-008426-ktn8c0zx 92 34 . . . cord-008426-ktn8c0zx 93 1 The the DT cord-008426-ktn8c0zx 93 2 alignment alignment NN cord-008426-ktn8c0zx 93 3 of of IN cord-008426-ktn8c0zx 93 4 the the DT cord-008426-ktn8c0zx 93 5 5 5 CD cord-008426-ktn8c0zx 93 6 ' ' POS cord-008426-ktn8c0zx 93 7 noncoding noncoding JJ cord-008426-ktn8c0zx 93 8 region region NN cord-008426-ktn8c0zx 93 9 of of IN cord-008426-ktn8c0zx 93 10 SBMV SBMV NNP cord-008426-ktn8c0zx 93 11 - - HYPH cord-008426-ktn8c0zx 93 12 B B NNP cord-008426-ktn8c0zx 93 13 with with IN cord-008426-ktn8c0zx 93 14 those those DT cord-008426-ktn8c0zx 93 15 of of IN cord-008426-ktn8c0zx 93 16 SBMV SBMV NNP cord-008426-ktn8c0zx 93 17 - - HYPH cord-008426-ktn8c0zx 93 18 C C NNP cord-008426-ktn8c0zx 93 19 and and CC cord-008426-ktn8c0zx 93 20 RYMV RYMV NNP cord-008426-ktn8c0zx 93 21 ( ( -LRB- cord-008426-ktn8c0zx 93 22 Fig Fig NNP cord-008426-ktn8c0zx 93 23 . . . cord-008426-ktn8c0zx 93 24 3 3 CD cord-008426-ktn8c0zx 93 25 ) ) -RRB- cord-008426-ktn8c0zx 93 26 shows show VBZ cord-008426-ktn8c0zx 93 27 a a DT cord-008426-ktn8c0zx 93 28 region region NN cord-008426-ktn8c0zx 93 29 of of IN cord-008426-ktn8c0zx 93 30 close close JJ cord-008426-ktn8c0zx 93 31 similarity similarity NN cord-008426-ktn8c0zx 93 32 between between IN cord-008426-ktn8c0zx 93 33 the the DT cord-008426-ktn8c0zx 93 34 5 5 CD cord-008426-ktn8c0zx 93 35 ' ' POS cord-008426-ktn8c0zx 93 36 43 43 CD cord-008426-ktn8c0zx 93 37 nucleotides nucleotide NNS cord-008426-ktn8c0zx 93 38 of of IN cord-008426-ktn8c0zx 93 39 SBMV SBMV NNP cord-008426-ktn8c0zx 93 40 - - HYPH cord-008426-ktn8c0zx 93 41 B B NNP cord-008426-ktn8c0zx 93 42 and and CC cord-008426-ktn8c0zx 93 43 the the DT cord-008426-ktn8c0zx 93 44 leader leader NN cord-008426-ktn8c0zx 93 45 of of IN cord-008426-ktn8c0zx 93 46 SBMV SBMV NNP cord-008426-ktn8c0zx 93 47 - - HYPH cord-008426-ktn8c0zx 93 48 C C NNP cord-008426-ktn8c0zx 93 49 but but CC cord-008426-ktn8c0zx 93 50 less less JJR cord-008426-ktn8c0zx 93 51 similarity similarity NN cord-008426-ktn8c0zx 93 52 to to IN cord-008426-ktn8c0zx 93 53 the the DT cord-008426-ktn8c0zx 93 54 leader leader NN cord-008426-ktn8c0zx 93 55 of of IN cord-008426-ktn8c0zx 93 56 RYMV RYMV NNP cord-008426-ktn8c0zx 93 57 ; ; : cord-008426-ktn8c0zx 93 58 there there EX cord-008426-ktn8c0zx 93 59 was be VBD cord-008426-ktn8c0zx 93 60 no no DT cord-008426-ktn8c0zx 93 61 increase increase NN cord-008426-ktn8c0zx 93 62 in in IN cord-008426-ktn8c0zx 93 63 similarity similarity NN cord-008426-ktn8c0zx 93 64 between between IN cord-008426-ktn8c0zx 93 65 the the DT cord-008426-ktn8c0zx 93 66 leader leader NN cord-008426-ktn8c0zx 93 67 sequences sequence NNS cord-008426-ktn8c0zx 93 68 of of IN cord-008426-ktn8c0zx 93 69 SBMV SBMV NNP cord-008426-ktn8c0zx 93 70 - - HYPH cord-008426-ktn8c0zx 93 71 B B NNP cord-008426-ktn8c0zx 93 72 and and CC cord-008426-ktn8c0zx 93 73 RYMV RYMV NNP cord-008426-ktn8c0zx 93 74 in in IN cord-008426-ktn8c0zx 93 75 the the DT cord-008426-ktn8c0zx 93 76 part part NN cord-008426-ktn8c0zx 93 77 net net NN cord-008426-ktn8c0zx 93 78 shown show VBN cord-008426-ktn8c0zx 93 79 in in IN cord-008426-ktn8c0zx 93 80 Fig Fig NNP cord-008426-ktn8c0zx 93 81 . . . cord-008426-ktn8c0zx 94 1 3 3 LS cord-008426-ktn8c0zx 94 2 . . . cord-008426-ktn8c0zx 95 1 There there EX cord-008426-ktn8c0zx 95 2 are be VBP cord-008426-ktn8c0zx 95 3 various various JJ cord-008426-ktn8c0zx 95 4 suggestions suggestion NNS cord-008426-ktn8c0zx 95 5 for for IN cord-008426-ktn8c0zx 95 6 significant significant JJ cord-008426-ktn8c0zx 95 7 motifs motif NNS cord-008426-ktn8c0zx 95 8 in in IN cord-008426-ktn8c0zx 95 9 the the DT cord-008426-ktn8c0zx 95 10 leader leader NN cord-008426-ktn8c0zx 95 11 sequences sequence NNS cord-008426-ktn8c0zx 95 12 of of IN cord-008426-ktn8c0zx 95 13 SBMV SBMV NNP cord-008426-ktn8c0zx 95 14 - - HYPH cord-008426-ktn8c0zx 95 15 C C NNP cord-008426-ktn8c0zx 95 16 and and CC cord-008426-ktn8c0zx 95 17 RYMV RYMV NNP cord-008426-ktn8c0zx 96 1 ( ( -LRB- cord-008426-ktn8c0zx 96 2 Wu Wu NNP cord-008426-ktn8c0zx 96 3 et et NNP cord-008426-ktn8c0zx 96 4 al al NNP cord-008426-ktn8c0zx 96 5 . . NNP cord-008426-ktn8c0zx 96 6 , , , cord-008426-ktn8c0zx 96 7 1987 1987 CD cord-008426-ktn8c0zx 96 8 ; ; . cord-008426-ktn8c0zx 97 1 Ngon Ngon NNP cord-008426-ktn8c0zx 97 2 A a DT cord-008426-ktn8c0zx 97 3 Yassi Yassi NNP cord-008426-ktn8c0zx 97 4 et et FW cord-008426-ktn8c0zx 97 5 al al NNP cord-008426-ktn8c0zx 97 6 . . NNP cord-008426-ktn8c0zx 97 7 , , , cord-008426-ktn8c0zx 97 8 1994 1994 CD cord-008426-ktn8c0zx 97 9 ) ) -RRB- cord-008426-ktn8c0zx 97 10 . . . cord-008426-ktn8c0zx 98 1 These these DT cord-008426-ktn8c0zx 98 2 include include VBP cord-008426-ktn8c0zx 98 3 suggested suggest VBN cord-008426-ktn8c0zx 98 4 complementarity complementarity NN cord-008426-ktn8c0zx 98 5 to to IN cord-008426-ktn8c0zx 98 6 the the DT cord-008426-ktn8c0zx 98 7 3 3 CD cord-008426-ktn8c0zx 98 8 ' ' NN cord-008426-ktn8c0zx 98 9 terminus terminus NN cord-008426-ktn8c0zx 98 10 of of IN cord-008426-ktn8c0zx 98 11 18S 18S NNP cord-008426-ktn8c0zx 98 12 rRNA rRNA NNP cord-008426-ktn8c0zx 98 13 for for IN cord-008426-ktn8c0zx 98 14 both both DT cord-008426-ktn8c0zx 98 15 viruses virus NNS cord-008426-ktn8c0zx 98 16 ( ( -LRB- cord-008426-ktn8c0zx 98 17 highlighted highlight VBN cord-008426-ktn8c0zx 98 18 in in IN cord-008426-ktn8c0zx 98 19 Fig Fig NNP cord-008426-ktn8c0zx 98 20 . . . cord-008426-ktn8c0zx 98 21 3 3 CD cord-008426-ktn8c0zx 98 22 ) ) -RRB- cord-008426-ktn8c0zx 98 23 and and CC cord-008426-ktn8c0zx 98 24 a a DT cord-008426-ktn8c0zx 98 25 repeat repeat NN cord-008426-ktn8c0zx 98 26 ofthe ofthe DT cord-008426-ktn8c0zx 98 27 sequence sequence NN cord-008426-ktn8c0zx 98 28 ACAAUUG ACAAUUG NNP cord-008426-ktn8c0zx 98 29 in in IN cord-008426-ktn8c0zx 98 30 RYMV RYMV NNP cord-008426-ktn8c0zx 98 31 . . . cord-008426-ktn8c0zx 99 1 The the DT cord-008426-ktn8c0zx 99 2 alignment alignment NN cord-008426-ktn8c0zx 99 3 of of IN cord-008426-ktn8c0zx 99 4 the the DT cord-008426-ktn8c0zx 99 5 three three CD cord-008426-ktn8c0zx 99 6 leader leader NN cord-008426-ktn8c0zx 99 7 sequences sequence NNS cord-008426-ktn8c0zx 99 8 does do VBZ cord-008426-ktn8c0zx 99 9 not not RB cord-008426-ktn8c0zx 99 10 lend lend VB cord-008426-ktn8c0zx 99 11 much much JJ cord-008426-ktn8c0zx 99 12 support support NN cord-008426-ktn8c0zx 99 13 to to IN cord-008426-ktn8c0zx 99 14 any any DT cord-008426-ktn8c0zx 99 15 significance significance NN cord-008426-ktn8c0zx 99 16 of of IN cord-008426-ktn8c0zx 99 17 these these DT cord-008426-ktn8c0zx 99 18 motifs motif NNS cord-008426-ktn8c0zx 99 19 . . . cord-008426-ktn8c0zx 100 1 Keese Keese NNP cord-008426-ktn8c0zx 100 2 et et NNP cord-008426-ktn8c0zx 100 3 al al NNP cord-008426-ktn8c0zx 100 4 . . . cord-008426-ktn8c0zx 101 1 ( ( -LRB- cord-008426-ktn8c0zx 101 2 1990 1990 CD cord-008426-ktn8c0zx 101 3 ) ) -RRB- cord-008426-ktn8c0zx 101 4 noted note VBD cord-008426-ktn8c0zx 101 5 similarities similarity NNS cord-008426-ktn8c0zx 101 6 between between IN cord-008426-ktn8c0zx 101 7 the the DT cord-008426-ktn8c0zx 101 8 5 5 CD cord-008426-ktn8c0zx 101 9 ' ' POS cord-008426-ktn8c0zx 101 10 terminal terminal JJ cord-008426-ktn8c0zx 101 11 sequences sequence NNS cord-008426-ktn8c0zx 101 12 of of IN cord-008426-ktn8c0zx 101 13 various various JJ cord-008426-ktn8c0zx 101 14 luteoviruses luteoviruse NNS cord-008426-ktn8c0zx 101 15 and and CC cord-008426-ktn8c0zx 101 16 $ $ $ cord-008426-ktn8c0zx 101 17 BMV BMV NNP cord-008426-ktn8c0zx 101 18 - - HYPH cord-008426-ktn8c0zx 101 19 C. C. NNP cord-008426-ktn8c0zx 102 1 This this DT cord-008426-ktn8c0zx 102 2 does do VBZ cord-008426-ktn8c0zx 102 3 appear appear VB cord-008426-ktn8c0zx 102 4 to to TO cord-008426-ktn8c0zx 102 5 be be VB cord-008426-ktn8c0zx 102 6 reflected reflect VBN cord-008426-ktn8c0zx 102 7 in in IN cord-008426-ktn8c0zx 102 8 the the DT cord-008426-ktn8c0zx 102 9 consensus consensus NN cord-008426-ktn8c0zx 102 10 sequence sequence NN cord-008426-ktn8c0zx 102 11 between between IN cord-008426-ktn8c0zx 102 12 the the DT cord-008426-ktn8c0zx 102 13 three three CD cord-008426-ktn8c0zx 102 14 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 102 15 ( ( -LRB- cord-008426-ktn8c0zx 102 16 Fig Fig NNP cord-008426-ktn8c0zx 102 17 . . . cord-008426-ktn8c0zx 102 18 3 3 CD cord-008426-ktn8c0zx 102 19 ) ) -RRB- cord-008426-ktn8c0zx 102 20 . . . cord-008426-ktn8c0zx 103 1 The the DT cord-008426-ktn8c0zx 103 2 3 3 CD cord-008426-ktn8c0zx 103 3 ' ' NN cord-008426-ktn8c0zx 103 4 terminus terminus NN cord-008426-ktn8c0zx 103 5 of of IN cord-008426-ktn8c0zx 103 6 SBMV SBMV NNP cord-008426-ktn8c0zx 103 7 - - HYPH cord-008426-ktn8c0zx 103 8 B B NNP cord-008426-ktn8c0zx 103 9 is be VBZ cord-008426-ktn8c0zx 103 10 nonpolyadenylated nonpolyadenylate VBN cord-008426-ktn8c0zx 103 11 and and CC cord-008426-ktn8c0zx 103 12 the the DT cord-008426-ktn8c0zx 103 13 129 129 CD cord-008426-ktn8c0zx 103 14 nucleetides nucleetide NNS cord-008426-ktn8c0zx 103 15 which which WDT cord-008426-ktn8c0zx 103 16 constitute constitute VBP cord-008426-ktn8c0zx 103 17 the the DT cord-008426-ktn8c0zx 103 18 noncoding noncoding JJ cord-008426-ktn8c0zx 103 19 region region NN cord-008426-ktn8c0zx 103 20 exhibit exhibit VBP cord-008426-ktn8c0zx 103 21 no no DT cord-008426-ktn8c0zx 103 22 strong strong JJ cord-008426-ktn8c0zx 103 23 secondary secondary JJ cord-008426-ktn8c0zx 103 24 structures structure NNS cord-008426-ktn8c0zx 103 25 using use VBG cord-008426-ktn8c0zx 103 26 the the DT cord-008426-ktn8c0zx 103 27 computer computer NN cord-008426-ktn8c0zx 103 28 folding folding NN cord-008426-ktn8c0zx 103 29 programs program NNS cord-008426-ktn8c0zx 103 30 of of IN cord-008426-ktn8c0zx 103 31 Zuker Zuker NNP cord-008426-ktn8c0zx 103 32 and and CC cord-008426-ktn8c0zx 103 33 Steigler Steigler NNP cord-008426-ktn8c0zx 103 34 ( ( -LRB- cord-008426-ktn8c0zx 103 35 1981 1981 CD cord-008426-ktn8c0zx 103 36 ) ) -RRB- cord-008426-ktn8c0zx 103 37 . . . cord-008426-ktn8c0zx 104 1 Although although IN cord-008426-ktn8c0zx 104 2 the the DT cord-008426-ktn8c0zx 104 3 3 3 CD cord-008426-ktn8c0zx 104 4 ' ' POS cord-008426-ktn8c0zx 104 5 noncoding noncoding JJ cord-008426-ktn8c0zx 104 6 sequence sequence NN cord-008426-ktn8c0zx 104 7 of of IN cord-008426-ktn8c0zx 104 8 SBMV SBMV NNP cord-008426-ktn8c0zx 104 9 - - HYPH cord-008426-ktn8c0zx 104 10 C C NNP cord-008426-ktn8c0zx 104 11 was be VBD cord-008426-ktn8c0zx 104 12 of of IN cord-008426-ktn8c0zx 104 13 similar similar JJ cord-008426-ktn8c0zx 104 14 length length NN cord-008426-ktn8c0zx 104 15 ( ( -LRB- cord-008426-ktn8c0zx 104 16 136 136 CD cord-008426-ktn8c0zx 104 17 nt nt NN cord-008426-ktn8c0zx 104 18 ) ) -RRB- cord-008426-ktn8c0zx 104 19 and and CC cord-008426-ktn8c0zx 104 20 conformation conformation NN cord-008426-ktn8c0zx 105 1 ( ( -LRB- cord-008426-ktn8c0zx 105 2 no no DT cord-008426-ktn8c0zx 105 3 tRNA trna NN cord-008426-ktn8c0zx 105 4 - - HYPH cord-008426-ktn8c0zx 105 5 like like JJ cord-008426-ktn8c0zx 105 6 structures structure NNS cord-008426-ktn8c0zx 105 7 ) ) -RRB- cord-008426-ktn8c0zx 105 8 , , , cord-008426-ktn8c0zx 105 9 very very RB cord-008426-ktn8c0zx 105 10 little little JJ cord-008426-ktn8c0zx 105 11 sequence sequence NN cord-008426-ktn8c0zx 105 12 similarities similarity NNS cord-008426-ktn8c0zx 105 13 ( ( -LRB- cord-008426-ktn8c0zx 105 14 34 34 CD cord-008426-ktn8c0zx 105 15 % % NN cord-008426-ktn8c0zx 105 16 ) ) -RRB- cord-008426-ktn8c0zx 105 17 were be VBD cord-008426-ktn8c0zx 105 18 found find VBN cord-008426-ktn8c0zx 105 19 between between IN cord-008426-ktn8c0zx 105 20 the the DT cord-008426-ktn8c0zx 105 21 two two CD cord-008426-ktn8c0zx 105 22 noncoding noncoding JJ cord-008426-ktn8c0zx 105 23 regions region NNS cord-008426-ktn8c0zx 105 24 . . . cord-008426-ktn8c0zx 106 1 The the DT cord-008426-ktn8c0zx 106 2 somewhat somewhat RB cord-008426-ktn8c0zx 106 3 longer long JJR cord-008426-ktn8c0zx 106 4 3 3 CD cord-008426-ktn8c0zx 106 5 ' ' POS cord-008426-ktn8c0zx 106 6 noncoding noncoding JJ cord-008426-ktn8c0zx 106 7 region region NN cord-008426-ktn8c0zx 106 8 of of IN cord-008426-ktn8c0zx 106 9 RYMV RYMV NNP cord-008426-ktn8c0zx 106 10 ( ( -LRB- cord-008426-ktn8c0zx 106 11 245 245 CD cord-008426-ktn8c0zx 106 12 nucleotides nucleotide NNS cord-008426-ktn8c0zx 106 13 ) ) -RRB- cord-008426-ktn8c0zx 106 14 also also RB cord-008426-ktn8c0zx 106 15 shows show VBZ cord-008426-ktn8c0zx 106 16 no no DT cord-008426-ktn8c0zx 106 17 significant significant JJ cord-008426-ktn8c0zx 106 18 sequence sequence NN cord-008426-ktn8c0zx 106 19 similarity similarity NN cord-008426-ktn8c0zx 106 20 ( ( -LRB- cord-008426-ktn8c0zx 106 21 40 40 CD cord-008426-ktn8c0zx 106 22 % % NN cord-008426-ktn8c0zx 106 23 ) ) -RRB- cord-008426-ktn8c0zx 106 24 . . . cord-008426-ktn8c0zx 107 1 Although although IN cord-008426-ktn8c0zx 107 2 the the DT cord-008426-ktn8c0zx 107 3 subgenomic subgenomic NNP cord-008426-ktn8c0zx 107 4 mRNAs mRNAs NNPS cord-008426-ktn8c0zx 107 5 of of IN cord-008426-ktn8c0zx 107 6 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 107 7 have have VBP cord-008426-ktn8c0zx 107 8 not not RB cord-008426-ktn8c0zx 107 9 been be VBN cord-008426-ktn8c0zx 107 10 mapped map VBN cord-008426-ktn8c0zx 107 11 in in IN cord-008426-ktn8c0zx 107 12 detail detail NN cord-008426-ktn8c0zx 107 13 they -PRON- PRP cord-008426-ktn8c0zx 107 14 do do VBP cord-008426-ktn8c0zx 107 15 encode encode VB cord-008426-ktn8c0zx 107 16 the the DT cord-008426-ktn8c0zx 107 17 3 3 NNP cord-008426-ktn8c0zx 107 18 ' ' '' cord-008426-ktn8c0zx 107 19 ORF ORF NNP cord-008426-ktn8c0zx 107 20 ( ( -LRB- cord-008426-ktn8c0zx 107 21 Rutgers Rutgers NNP cord-008426-ktn8c0zx 107 22 eta/. eta/. CD cord-008426-ktn8c0zx 107 23 , , , cord-008426-ktn8c0zx 107 24 1980 1980 CD cord-008426-ktn8c0zx 107 25 ) ) -RRB- cord-008426-ktn8c0zx 107 26 and and CC cord-008426-ktn8c0zx 107 27 most most RBS cord-008426-ktn8c0zx 107 28 likely likely RB cord-008426-ktn8c0zx 107 29 resemble resemble VBP cord-008426-ktn8c0zx 107 30 many many JJ cord-008426-ktn8c0zx 107 31 other other JJ cord-008426-ktn8c0zx 107 32 viruses virus NNS cord-008426-ktn8c0zx 107 33 in in IN cord-008426-ktn8c0zx 107 34 being be VBG cord-008426-ktn8c0zx 107 35 3 3 CD cord-008426-ktn8c0zx 107 36 ' ' '' cord-008426-ktn8c0zx 107 37 coterminal coterminal JJ cord-008426-ktn8c0zx 107 38 with with IN cord-008426-ktn8c0zx 107 39 the the DT cord-008426-ktn8c0zx 107 40 genomic genomic JJ cord-008426-ktn8c0zx 107 41 RNA rna NN cord-008426-ktn8c0zx 107 42 . . . cord-008426-ktn8c0zx 108 1 This this DT cord-008426-ktn8c0zx 108 2 would would MD cord-008426-ktn8c0zx 108 3 mean mean VB cord-008426-ktn8c0zx 108 4 that that IN cord-008426-ktn8c0zx 108 5 they -PRON- PRP cord-008426-ktn8c0zx 108 6 are be VBP cord-008426-ktn8c0zx 108 7 promoted promote VBN cord-008426-ktn8c0zx 108 8 from from IN cord-008426-ktn8c0zx 108 9 a a DT cord-008426-ktn8c0zx 108 10 sequence sequence NN cord-008426-ktn8c0zx 108 11 upstream upstream RB cord-008426-ktn8c0zx 108 12 of of IN cord-008426-ktn8c0zx 108 13 the the DT cord-008426-ktn8c0zx 108 14 3 3 CD cord-008426-ktn8c0zx 108 15 ' ' POS cord-008426-ktn8c0zx 108 16 ORF ORF NNP cord-008426-ktn8c0zx 108 17 which which WDT cord-008426-ktn8c0zx 108 18 in in IN cord-008426-ktn8c0zx 108 19 SBMV SBMV NNP cord-008426-ktn8c0zx 108 20 - - HYPH cord-008426-ktn8c0zx 108 21 B B NNP cord-008426-ktn8c0zx 108 22 is be VBZ cord-008426-ktn8c0zx 108 23 an an DT cord-008426-ktn8c0zx 108 24 intergenic intergenic JJ cord-008426-ktn8c0zx 108 25 region region NN cord-008426-ktn8c0zx 108 26 . . . cord-008426-ktn8c0zx 109 1 No no DT cord-008426-ktn8c0zx 109 2 significant significant JJ 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B. NNP cord-008426-ktn8c0zx 113 1 Below below IN cord-008426-ktn8c0zx 113 2 the the DT cord-008426-ktn8c0zx 113 3 line line NN cord-008426-ktn8c0zx 113 4 of of IN cord-008426-ktn8c0zx 113 5 sequence sequence NN cord-008426-ktn8c0zx 113 6 is be VBZ cord-008426-ktn8c0zx 113 7 the the DT cord-008426-ktn8c0zx 113 8 amino amino NN cord-008426-ktn8c0zx 113 9 acid acid NN cord-008426-ktn8c0zx 113 10 sequence sequence NN cord-008426-ktn8c0zx 113 11 of of IN cord-008426-ktn8c0zx 113 12 the the DT cord-008426-ktn8c0zx 113 13 three three CD cord-008426-ktn8c0zx 113 14 ORFs ORFs NNPS cord-008426-ktn8c0zx 113 15 given give VBN cord-008426-ktn8c0zx 113 16 in in IN cord-008426-ktn8c0zx 113 17 single single JJ cord-008426-ktn8c0zx 113 18 letter letter NN cord-008426-ktn8c0zx 113 19 code code NN cord-008426-ktn8c0zx 113 20 , , , cord-008426-ktn8c0zx 113 21 that that IN cord-008426-ktn8c0zx 113 22 in in IN cord-008426-ktn8c0zx 113 23 lowercase lowercase NN cord-008426-ktn8c0zx 113 24 being be VBG cord-008426-ktn8c0zx 113 25 the the DT cord-008426-ktn8c0zx 113 26 possible possible JJ cord-008426-ktn8c0zx 113 27 readthrough readthrough NN cord-008426-ktn8c0zx 113 28 product product NN cord-008426-ktn8c0zx 113 29 mentioned mention VBN cord-008426-ktn8c0zx 113 30 in in IN cord-008426-ktn8c0zx 113 31 the the DT cord-008426-ktn8c0zx 113 32 text text NN cord-008426-ktn8c0zx 113 33 . . . cord-008426-ktn8c0zx 114 1 AB1 ab1 NN cord-008426-ktn8c0zx 114 2 and and CC cord-008426-ktn8c0zx 114 3 2 2 CD cord-008426-ktn8c0zx 114 4 indicate indicate VBP cord-008426-ktn8c0zx 114 5 the the DT cord-008426-ktn8c0zx 114 6 ATP ATP NNP cord-008426-ktn8c0zx 114 7 - - HYPH cord-008426-ktn8c0zx 114 8 binding bind VBG cord-008426-ktn8c0zx 114 9 domains domain NNS cord-008426-ktn8c0zx 114 10 , , , cord-008426-ktn8c0zx 114 11 SP1 SP1 NNP cord-008426-ktn8c0zx 114 12 - - HYPH cord-008426-ktn8c0zx 114 13 4 4 CD cord-008426-ktn8c0zx 114 14 the the DT cord-008426-ktn8c0zx 114 15 serine serine NN cord-008426-ktn8c0zx 114 16 protease protease NN cord-008426-ktn8c0zx 114 17 domains domain NNS cord-008426-ktn8c0zx 114 18 , , , cord-008426-ktn8c0zx 114 19 and and CC cord-008426-ktn8c0zx 114 20 PI pi NN cord-008426-ktn8c0zx 114 21 - - HYPH cord-008426-ktn8c0zx 114 22 VlII VlII NNP cord-008426-ktn8c0zx 115 1 the the DT cord-008426-ktn8c0zx 115 2 polymerase polymerase NN cord-008426-ktn8c0zx 115 3 domains domain NNS cord-008426-ktn8c0zx 115 4 as as IN cord-008426-ktn8c0zx 115 5 discussed discuss VBN cord-008426-ktn8c0zx 115 6 in in IN cord-008426-ktn8c0zx 115 7 the the DT cord-008426-ktn8c0zx 115 8 text text NN cord-008426-ktn8c0zx 115 9 . . . cord-008426-ktn8c0zx 116 1 region region NN cord-008426-ktn8c0zx 116 2 immediately immediately RB cord-008426-ktn8c0zx 116 3 upstream upstream RB cord-008426-ktn8c0zx 116 4 of of IN cord-008426-ktn8c0zx 116 5 the the DT cord-008426-ktn8c0zx 116 6 coat coat NN cord-008426-ktn8c0zx 116 7 protein protein NN cord-008426-ktn8c0zx 116 8 ORFs ORFs NNP cord-008426-ktn8c0zx 116 9 of of IN cord-008426-ktn8c0zx 116 10 the the DT cord-008426-ktn8c0zx 116 11 other other JJ cord-008426-ktn8c0zx 116 12 two two CD cord-008426-ktn8c0zx 116 13 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 116 14 . . . cord-008426-ktn8c0zx 117 1 Coding coding NN cord-008426-ktn8c0zx 117 2 regions region NNS cord-008426-ktn8c0zx 117 3 for for IN cord-008426-ktn8c0zx 117 4 nonstructural nonstructural JJ cord-008426-ktn8c0zx 117 5 proteins protein NNS cord-008426-ktn8c0zx 117 6 . . . cord-008426-ktn8c0zx 118 1 The the DT cord-008426-ktn8c0zx 118 2 first first JJ cord-008426-ktn8c0zx 118 3 AUG AUG NNP cord-008426-ktn8c0zx 118 4 in in IN cord-008426-ktn8c0zx 118 5 the the DT cord-008426-ktn8c0zx 118 6 SBMV SBMV NNP cord-008426-ktn8c0zx 118 7 - - HYPH cord-008426-ktn8c0zx 118 8 B b NN cord-008426-ktn8c0zx 118 9 sequence sequence NN cord-008426-ktn8c0zx 118 10 at at IN cord-008426-ktn8c0zx 118 11 nucleotide nucleotide JJ cord-008426-ktn8c0zx 118 12 93 93 CD cord-008426-ktn8c0zx 118 13 marks mark NNS cord-008426-ktn8c0zx 118 14 the the DT cord-008426-ktn8c0zx 118 15 start start NN cord-008426-ktn8c0zx 118 16 of of IN cord-008426-ktn8c0zx 118 17 the the DT cord-008426-ktn8c0zx 118 18 coding code VBG cord-008426-ktn8c0zx 118 19 region region NN cord-008426-ktn8c0zx 118 20 ( ( -LRB- cord-008426-ktn8c0zx 118 21 ORF ORF NNP cord-008426-ktn8c0zx 118 22 1 1 CD cord-008426-ktn8c0zx 118 23 ) ) -RRB- cord-008426-ktn8c0zx 118 24 which which WDT cord-008426-ktn8c0zx 118 25 terminates terminate VBZ cord-008426-ktn8c0zx 118 26 at at IN cord-008426-ktn8c0zx 118 27 nucleotide nucleotide JJ cord-008426-ktn8c0zx 118 28 415 415 CD cord-008426-ktn8c0zx 118 29 and and CC cord-008426-ktn8c0zx 118 30 potentially potentially RB cord-008426-ktn8c0zx 118 31 encodes encode VBZ cord-008426-ktn8c0zx 118 32 a a DT cord-008426-ktn8c0zx 118 33 protein protein NN cord-008426-ktn8c0zx 118 34 of of IN cord-008426-ktn8c0zx 118 35 Mr Mr NNP cord-008426-ktn8c0zx 118 36 11,684 11,684 CD cord-008426-ktn8c0zx 118 37 . . . cord-008426-ktn8c0zx 119 1 This this DT cord-008426-ktn8c0zx 119 2 is be VBZ cord-008426-ktn8c0zx 119 3 somewhat somewhat RB cord-008426-ktn8c0zx 119 4 smaller small JJR cord-008426-ktn8c0zx 119 5 than than IN cord-008426-ktn8c0zx 119 6 the the DT cord-008426-ktn8c0zx 119 7 product(s product(s NNP cord-008426-ktn8c0zx 119 8 ) ) -RRB- cord-008426-ktn8c0zx 119 9 of of IN cord-008426-ktn8c0zx 119 10 the the DT cord-008426-ktn8c0zx 119 11 equivalent equivalent JJ cord-008426-ktn8c0zx 119 12 ORF orf NN cord-008426-ktn8c0zx 119 13 of of IN cord-008426-ktn8c0zx 119 14 SBMV SBMV NNP cord-008426-ktn8c0zx 119 15 - - HYPH cord-008426-ktn8c0zx 119 16 C C NNP cord-008426-ktn8c0zx 119 17 ( ( -LRB- cord-008426-ktn8c0zx 119 18 21 21 CD cord-008426-ktn8c0zx 119 19 K K NNP cord-008426-ktn8c0zx 119 20 ) ) -RRB- cord-008426-ktn8c0zx 119 21 and and CC cord-008426-ktn8c0zx 119 22 of of IN cord-008426-ktn8c0zx 119 23 RYMV RYMV NNP cord-008426-ktn8c0zx 119 24 ( ( -LRB- cord-008426-ktn8c0zx 119 25 18 18 CD cord-008426-ktn8c0zx 119 26 and and CC cord-008426-ktn8c0zx 119 27 19.5 19.5 CD cord-008426-ktn8c0zx 119 28 K K NNP cord-008426-ktn8c0zx 119 29 ) ) -RRB- cord-008426-ktn8c0zx 119 30 , , , cord-008426-ktn8c0zx 119 31 but but CC cord-008426-ktn8c0zx 119 32 is be VBZ cord-008426-ktn8c0zx 119 33 in in IN cord-008426-ktn8c0zx 119 34 accord accord NN cord-008426-ktn8c0zx 119 35 with with IN cord-008426-ktn8c0zx 119 36 the the DT cord-008426-ktn8c0zx 119 37 in in FW cord-008426-ktn8c0zx 119 38 vitro vitro FW cord-008426-ktn8c0zx 119 39 translation translation NN cord-008426-ktn8c0zx 119 40 product product NN cord-008426-ktn8c0zx 119 41 ( ( -LRB- cord-008426-ktn8c0zx 119 42 14 14 CD cord-008426-ktn8c0zx 119 43 K K NNP cord-008426-ktn8c0zx 119 44 ) ) -RRB- cord-008426-ktn8c0zx 119 45 attributed attribute VBD cord-008426-ktn8c0zx 119 46 to to IN cord-008426-ktn8c0zx 119 47 this this DT cord-008426-ktn8c0zx 119 48 ORF ORF NNP cord-008426-ktn8c0zx 119 49 ( ( -LRB- cord-008426-ktn8c0zx 119 50 Mang Mang NNP cord-008426-ktn8c0zx 119 51 etaL etaL NNP cord-008426-ktn8c0zx 119 52 , , , cord-008426-ktn8c0zx 119 53 1982 1982 CD cord-008426-ktn8c0zx 119 54 ) ) -RRB- cord-008426-ktn8c0zx 119 55 . . . cord-008426-ktn8c0zx 120 1 Ngon Ngon NNP cord-008426-ktn8c0zx 120 2 A a DT cord-008426-ktn8c0zx 121 1 Yassi Yassi NNP cord-008426-ktn8c0zx 121 2 et et FW cord-008426-ktn8c0zx 121 3 aL aL NNP cord-008426-ktn8c0zx 121 4 ( ( -LRB- cord-008426-ktn8c0zx 121 5 1994 1994 CD cord-008426-ktn8c0zx 121 6 ) ) -RRB- cord-008426-ktn8c0zx 121 7 suggested suggest VBD cord-008426-ktn8c0zx 121 8 that that IN cord-008426-ktn8c0zx 121 9 the the DT cord-008426-ktn8c0zx 121 10 UGA UGA NNP cord-008426-ktn8c0zx 121 11 stop stop NN cord-008426-ktn8c0zx 121 12 codon codon NN cord-008426-ktn8c0zx 121 13 of of IN cord-008426-ktn8c0zx 121 14 ORF ORF NNP cord-008426-ktn8c0zx 121 15 1 1 CD cord-008426-ktn8c0zx 121 16 of of IN cord-008426-ktn8c0zx 121 17 RYMV RYMV NNP cord-008426-ktn8c0zx 121 18 might may MD cord-008426-ktn8c0zx 121 19 be be VB cord-008426-ktn8c0zx 121 20 read read VBN cord-008426-ktn8c0zx 121 21 through through RP cord-008426-ktn8c0zx 121 22 to to TO cord-008426-ktn8c0zx 121 23 give give VB cord-008426-ktn8c0zx 121 24 a a DT cord-008426-ktn8c0zx 121 25 product product NN cord-008426-ktn8c0zx 121 26 with with IN cord-008426-ktn8c0zx 121 27 an an DT cord-008426-ktn8c0zx 121 28 extra extra JJ cord-008426-ktn8c0zx 121 29 16 16 CD cord-008426-ktn8c0zx 121 30 residues residue NNS cord-008426-ktn8c0zx 121 31 . . . cord-008426-ktn8c0zx 122 1 Readthrough Readthrough NNP cord-008426-ktn8c0zx 122 2 of of IN cord-008426-ktn8c0zx 122 3 the the DT cord-008426-ktn8c0zx 122 4 UAG UAG NNP cord-008426-ktn8c0zx 122 5 stop stop NN cord-008426-ktn8c0zx 122 6 codon codon NN cord-008426-ktn8c0zx 122 7 of of IN cord-008426-ktn8c0zx 122 8 SBMV SBMV NNP cord-008426-ktn8c0zx 122 9 - - HYPH cord-008426-ktn8c0zx 122 10 B B NNP cord-008426-ktn8c0zx 122 11 would would MD cord-008426-ktn8c0zx 122 12 give give VB cord-008426-ktn8c0zx 122 13 a a DT cord-008426-ktn8c0zx 122 14 product product NN cord-008426-ktn8c0zx 122 15 with with IN cord-008426-ktn8c0zx 122 16 an an DT cord-008426-ktn8c0zx 122 17 extra extra JJ cord-008426-ktn8c0zx 122 18 79 79 CD cord-008426-ktn8c0zx 122 19 amino amino JJ cord-008426-ktn8c0zx 122 20 acids acid NNS cord-008426-ktn8c0zx 122 21 ( ( -LRB- cord-008426-ktn8c0zx 122 22 Fig Fig NNP cord-008426-ktn8c0zx 122 23 . . NNP cord-008426-ktn8c0zx 122 24 2 2 CD cord-008426-ktn8c0zx 122 25 ) ) -RRB- cord-008426-ktn8c0zx 122 26 . . . cord-008426-ktn8c0zx 123 1 However however RB cord-008426-ktn8c0zx 123 2 , , , cord-008426-ktn8c0zx 123 3 as as IN cord-008426-ktn8c0zx 123 4 in in IN cord-008426-ktn8c0zx 123 5 vitro vitro FW cord-008426-ktn8c0zx 123 6 translation translation NN cord-008426-ktn8c0zx 123 7 did do VBD cord-008426-ktn8c0zx 123 8 not not RB cord-008426-ktn8c0zx 123 9 show show VB cord-008426-ktn8c0zx 123 10 a a DT cord-008426-ktn8c0zx 123 11 product product NN cord-008426-ktn8c0zx 123 12 with with IN cord-008426-ktn8c0zx 123 13 the the DT cord-008426-ktn8c0zx 123 14 expected expect VBN cord-008426-ktn8c0zx 123 15 molecular molecular JJ cord-008426-ktn8c0zx 123 16 weight weight NN cord-008426-ktn8c0zx 123 17 ( ( -LRB- cord-008426-ktn8c0zx 123 18 about about RB cord-008426-ktn8c0zx 123 19 20,500 20,500 CD cord-008426-ktn8c0zx 123 20 ) ) -RRB- cord-008426-ktn8c0zx 123 21 , , , cord-008426-ktn8c0zx 123 22 readthrough readthrough NNP cord-008426-ktn8c0zx 123 23 is be VBZ cord-008426-ktn8c0zx 123 24 thought think VBN cord-008426-ktn8c0zx 123 25 unlikely unlikely JJ cord-008426-ktn8c0zx 123 26 to to TO cord-008426-ktn8c0zx 123 27 occur occur VB cord-008426-ktn8c0zx 123 28 . . . cord-008426-ktn8c0zx 124 1 There there EX cord-008426-ktn8c0zx 124 2 is be VBZ cord-008426-ktn8c0zx 124 3 little little JJ cord-008426-ktn8c0zx 124 4 similarity similarity NN cord-008426-ktn8c0zx 124 5 between between IN cord-008426-ktn8c0zx 124 6 the the DT cord-008426-ktn8c0zx 124 7 nucleotide nucleotide JJ cord-008426-ktn8c0zx 124 8 or or CC cord-008426-ktn8c0zx 124 9 amino amino NN cord-008426-ktn8c0zx 124 10 acid acid NN cord-008426-ktn8c0zx 124 11 sequences sequence NNS cord-008426-ktn8c0zx 124 12 of of IN cord-008426-ktn8c0zx 124 13 this this DT cord-008426-ktn8c0zx 124 14 ORF ORF NNP cord-008426-ktn8c0zx 124 15 from from IN cord-008426-ktn8c0zx 124 16 SBMV SBMV NNP cord-008426-ktn8c0zx 124 17 - - HYPH cord-008426-ktn8c0zx 124 18 B B NNP cord-008426-ktn8c0zx 124 19 , , , cord-008426-ktn8c0zx 124 20 SBMV SBMV NNP cord-008426-ktn8c0zx 124 21 - - HYPH cord-008426-ktn8c0zx 124 22 C C NNP cord-008426-ktn8c0zx 124 23 , , , cord-008426-ktn8c0zx 124 24 or or CC cord-008426-ktn8c0zx 124 25 RYMV RYMV NNP cord-008426-ktn8c0zx 124 26 ( ( -LRB- cord-008426-ktn8c0zx 124 27 Table Table NNP cord-008426-ktn8c0zx 124 28 1 1 CD cord-008426-ktn8c0zx 124 29 ) ) -RRB- cord-008426-ktn8c0zx 124 30 . . . cord-008426-ktn8c0zx 125 1 Data data NN cord-008426-ktn8c0zx 125 2 base base NN cord-008426-ktn8c0zx 125 3 searching search VBG cord-008426-ktn8c0zx 125 4 did do VBD cord-008426-ktn8c0zx 125 5 not not RB cord-008426-ktn8c0zx 125 6 reveal reveal VB cord-008426-ktn8c0zx 125 7 any any DT cord-008426-ktn8c0zx 125 8 other other JJ cord-008426-ktn8c0zx 125 9 proteins protein NNS cord-008426-ktn8c0zx 125 10 similar similar JJ cord-008426-ktn8c0zx 125 11 to to IN cord-008426-ktn8c0zx 125 12 the the DT cord-008426-ktn8c0zx 125 13 product product NN cord-008426-ktn8c0zx 125 14 of of IN cord-008426-ktn8c0zx 125 15 this this DT cord-008426-ktn8c0zx 125 16 ORF ORF NNP cord-008426-ktn8c0zx 125 17 and and CC cord-008426-ktn8c0zx 125 18 currently currently RB cord-008426-ktn8c0zx 125 19 no no DT cord-008426-ktn8c0zx 125 20 firm firm JJ cord-008426-ktn8c0zx 125 21 function function NN cord-008426-ktn8c0zx 125 22 can can MD cord-008426-ktn8c0zx 125 23 be be VB cord-008426-ktn8c0zx 125 24 attributed attribute VBN cord-008426-ktn8c0zx 125 25 to to IN cord-008426-ktn8c0zx 125 26 it -PRON- PRP cord-008426-ktn8c0zx 125 27 . . . cord-008426-ktn8c0zx 126 1 However however RB cord-008426-ktn8c0zx 126 2 , , , cord-008426-ktn8c0zx 126 3 most most JJS cord-008426-ktn8c0zx 126 4 viruses virus NNS cord-008426-ktn8c0zx 126 5 , , , cord-008426-ktn8c0zx 126 6 which which WDT cord-008426-ktn8c0zx 126 7 like like IN cord-008426-ktn8c0zx 126 8 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 126 9 give give VBP cord-008426-ktn8c0zx 126 10 a a DT cord-008426-ktn8c0zx 126 11 full full JJ cord-008426-ktn8c0zx 126 12 systemic systemic JJ cord-008426-ktn8c0zx 126 13 infection infection NN cord-008426-ktn8c0zx 126 14 of of IN cord-008426-ktn8c0zx 126 15 susceptible susceptible JJ cord-008426-ktn8c0zx 126 16 host host NN cord-008426-ktn8c0zx 126 17 , , , cord-008426-ktn8c0zx 126 18 encode encode VB cord-008426-ktn8c0zx 126 19 a a DT cord-008426-ktn8c0zx 126 20 protein protein NN cord-008426-ktn8c0zx 126 21 which which WDT cord-008426-ktn8c0zx 126 22 potentiates potentiate VBZ cord-008426-ktn8c0zx 126 23 cell cell NN cord-008426-ktn8c0zx 126 24 - - HYPH cord-008426-ktn8c0zx 126 25 to to IN cord-008426-ktn8c0zx 126 26 - - HYPH cord-008426-ktn8c0zx 126 27 cell cell NN cord-008426-ktn8c0zx 126 28 movement movement NN cord-008426-ktn8c0zx 126 29 . . . cord-008426-ktn8c0zx 127 1 Thus thus RB cord-008426-ktn8c0zx 127 2 , , , cord-008426-ktn8c0zx 127 3 one one CD cord-008426-ktn8c0zx 127 4 possible possible JJ cord-008426-ktn8c0zx 127 5 ( ( -LRB- cord-008426-ktn8c0zx 127 6 Keese Keese NNP cord-008426-ktn8c0zx 127 7 et et NNP cord-008426-ktn8c0zx 127 8 aL aL NNP cord-008426-ktn8c0zx 127 9 , , , cord-008426-ktn8c0zx 127 10 1990 1990 CD cord-008426-ktn8c0zx 127 11 ) ) -RRB- cord-008426-ktn8c0zx 127 12 . . . cord-008426-ktn8c0zx 128 1 The the DT cord-008426-ktn8c0zx 128 2 regions region NNS cord-008426-ktn8c0zx 128 3 with with IN cord-008426-ktn8c0zx 128 4 suggested suggest VBN cord-008426-ktn8c0zx 128 5 complementarity'to complementarity'to NN cord-008426-ktn8c0zx 128 6 the the DT cord-008426-ktn8c0zx 128 7 3 3 CD cord-008426-ktn8c0zx 128 8 ' ' NN cord-008426-ktn8c0zx 128 9 terminus terminus NN cord-008426-ktn8c0zx 128 10 of of IN cord-008426-ktn8c0zx 128 11 18S 18S NNPS cord-008426-ktn8c0zx 129 1 rRNA rRNA NNS cord-008426-ktn8c0zx 129 2 are be VBP cord-008426-ktn8c0zx 129 3 highlighted highlight VBN cord-008426-ktn8c0zx 129 4 . . . cord-008426-ktn8c0zx 130 1 function function NN cord-008426-ktn8c0zx 130 2 of of IN cord-008426-ktn8c0zx 130 3 the the DT cord-008426-ktn8c0zx 130 4 product product NN cord-008426-ktn8c0zx 130 5 of of IN cord-008426-ktn8c0zx 130 6 sobemovirus sobemovirus NNP cord-008426-ktn8c0zx 130 7 ORF ORF NNP cord-008426-ktn8c0zx 130 8 1 1 CD cord-008426-ktn8c0zx 130 9 is be VBZ cord-008426-ktn8c0zx 130 10 that that IN cord-008426-ktn8c0zx 130 11 it -PRON- PRP cord-008426-ktn8c0zx 130 12 is be VBZ cord-008426-ktn8c0zx 130 13 a a DT cord-008426-ktn8c0zx 130 14 movement movement NN cord-008426-ktn8c0zx 130 15 protein protein NN cord-008426-ktn8c0zx 130 16 . . . cord-008426-ktn8c0zx 131 1 The the DT cord-008426-ktn8c0zx 131 2 second second JJ cord-008426-ktn8c0zx 131 3 ORF ORF NNP cord-008426-ktn8c0zx 131 4 of of IN cord-008426-ktn8c0zx 131 5 SBMV SBMV NNP cord-008426-ktn8c0zx 131 6 - - HYPH cord-008426-ktn8c0zx 131 7 B B NNP cord-008426-ktn8c0zx 131 8 extends extend VBZ cord-008426-ktn8c0zx 131 9 from from IN cord-008426-ktn8c0zx 131 10 nucleotide nucleotide JJ cord-008426-ktn8c0zx 131 11 505 505 CD cord-008426-ktn8c0zx 131 12 to to TO cord-008426-ktn8c0zx 131 13 nucleotide nucleotide JJ cord-008426-ktn8c0zx 131 14 3087 3087 CD cord-008426-ktn8c0zx 131 15 and and CC cord-008426-ktn8c0zx 131 16 encodes encode VBZ cord-008426-ktn8c0zx 131 17 the the DT cord-008426-ktn8c0zx 131 18 largest large JJS cord-008426-ktn8c0zx 131 19 potential potential JJ cord-008426-ktn8c0zx 131 20 protein protein NN cord-008426-ktn8c0zx 131 21 product product NN cord-008426-ktn8c0zx 131 22 of of IN cord-008426-ktn8c0zx 131 23 M M NNP cord-008426-ktn8c0zx 131 24 , , , cord-008426-ktn8c0zx 131 25 96,481 96,481 CD cord-008426-ktn8c0zx 131 26 . . . cord-008426-ktn8c0zx 132 1 Overall overall RB cord-008426-ktn8c0zx 132 2 the the DT cord-008426-ktn8c0zx 132 3 product product NN cord-008426-ktn8c0zx 132 4 of of IN cord-008426-ktn8c0zx 132 5 this this DT cord-008426-ktn8c0zx 132 6 ORF ORF NNP cord-008426-ktn8c0zx 132 7 has have VBZ cord-008426-ktn8c0zx 132 8 an an DT cord-008426-ktn8c0zx 132 9 intermediate intermediate JJ cord-008426-ktn8c0zx 132 10 similarity similarity NN cord-008426-ktn8c0zx 132 11 to to IN cord-008426-ktn8c0zx 132 12 ORF ORF NNP cord-008426-ktn8c0zx 132 13 2 2 CD cord-008426-ktn8c0zx 132 14 of of IN cord-008426-ktn8c0zx 132 15 SBMV SBMV NNP cord-008426-ktn8c0zx 132 16 - - HYPH cord-008426-ktn8c0zx 132 17 C C NNP cord-008426-ktn8c0zx 132 18 and and CC cord-008426-ktn8c0zx 132 19 RYMV RYMV NNP cord-008426-ktn8c0zx 132 20 ( ( -LRB- cord-008426-ktn8c0zx 132 21 Table Table NNP cord-008426-ktn8c0zx 132 22 1 1 CD cord-008426-ktn8c0zx 132 23 ) ) -RRB- cord-008426-ktn8c0zx 132 24 but but CC cord-008426-ktn8c0zx 132 25 detailed detailed JJ cord-008426-ktn8c0zx 132 26 comparison comparison NN cord-008426-ktn8c0zx 132 27 ( ( -LRB- cord-008426-ktn8c0zx 132 28 Fig Fig NNP cord-008426-ktn8c0zx 132 29 . . . cord-008426-ktn8c0zx 132 30 4 4 LS cord-008426-ktn8c0zx 132 31 ) ) -RRB- cord-008426-ktn8c0zx 132 32 shows show VBZ cord-008426-ktn8c0zx 132 33 that that IN cord-008426-ktn8c0zx 132 34 there there EX cord-008426-ktn8c0zx 132 35 are be VBP cord-008426-ktn8c0zx 132 36 regions region NNS cord-008426-ktn8c0zx 132 37 of of IN cord-008426-ktn8c0zx 132 38 high high JJ cord-008426-ktn8c0zx 132 39 homology homology NN cord-008426-ktn8c0zx 132 40 . . . cord-008426-ktn8c0zx 133 1 These these DT cord-008426-ktn8c0zx 133 2 correspond correspond VBP cord-008426-ktn8c0zx 133 3 in in IN cord-008426-ktn8c0zx 133 4 the the DT cord-008426-ktn8c0zx 133 5 main main NN cord-008426-ktn8c0zx 133 6 to to IN cord-008426-ktn8c0zx 133 7 motifs motif NNS cord-008426-ktn8c0zx 133 8 found find VBN cord-008426-ktn8c0zx 133 9 in in IN cord-008426-ktn8c0zx 133 10 ORF ORF NNP cord-008426-ktn8c0zx 133 11 2 2 CD cord-008426-ktn8c0zx 133 12 of of IN cord-008426-ktn8c0zx 133 13 SBMV SBMV NNP cord-008426-ktn8c0zx 133 14 - - HYPH cord-008426-ktn8c0zx 133 15 C C NNP cord-008426-ktn8c0zx 133 16 and and CC cord-008426-ktn8c0zx 133 17 RYMV RYMV NNP cord-008426-ktn8c0zx 133 18 which which WDT cord-008426-ktn8c0zx 133 19 are be VBP cord-008426-ktn8c0zx 133 20 suggestive suggestive JJ cord-008426-ktn8c0zx 133 21 of of IN cord-008426-ktn8c0zx 133 22 the the DT cord-008426-ktn8c0zx 133 23 product product NN cord-008426-ktn8c0zx 133 24 being be VBG cord-008426-ktn8c0zx 133 25 a a DT cord-008426-ktn8c0zx 133 26 polyprotein polyprotein NN cord-008426-ktn8c0zx 133 27 containing contain VBG cord-008426-ktn8c0zx 133 28 polymerase polymerase NN cord-008426-ktn8c0zx 133 29 and and CC cord-008426-ktn8c0zx 133 30 other other JJ cord-008426-ktn8c0zx 133 31 activities activity NNS cord-008426-ktn8c0zx 133 32 . . . cord-008426-ktn8c0zx 134 1 Toward toward IN cord-008426-ktn8c0zx 134 2 the the DT cord-008426-ktn8c0zx 134 3 5 5 CD cord-008426-ktn8c0zx 134 4 ' ' NN cord-008426-ktn8c0zx 134 5 end end NN cord-008426-ktn8c0zx 134 6 are be VBP cord-008426-ktn8c0zx 134 7 the the DT cord-008426-ktn8c0zx 134 8 motifs motif NNS cord-008426-ktn8c0zx 134 9 characteristic characteristic NN cord-008426-ktn8c0zx 134 10 of of IN cord-008426-ktn8c0zx 134 11 serine serine NN cord-008426-ktn8c0zx 134 12 proteases protease NNS cord-008426-ktn8c0zx 134 13 ( ( -LRB- cord-008426-ktn8c0zx 134 14 Bazan Bazan NNP cord-008426-ktn8c0zx 134 15 and and CC cord-008426-ktn8c0zx 134 16 Fletterick Fletterick NNP cord-008426-ktn8c0zx 134 17 , , , cord-008426-ktn8c0zx 134 18 1990 1990 CD cord-008426-ktn8c0zx 134 19 ) ) -RRB- cord-008426-ktn8c0zx 134 20 shown show VBN cord-008426-ktn8c0zx 134 21 boxed box VBN cord-008426-ktn8c0zx 134 22 in in IN cord-008426-ktn8c0zx 134 23 Fig Fig NNP cord-008426-ktn8c0zx 134 24 . . . cord-008426-ktn8c0zx 135 1 2 2 LS cord-008426-ktn8c0zx 135 2 ( ( -LRB- cord-008426-ktn8c0zx 135 3 SP SP NNP cord-008426-ktn8c0zx 135 4 1 1 CD cord-008426-ktn8c0zx 135 5 -SP -SP NNP cord-008426-ktn8c0zx 135 6 4 4 CD cord-008426-ktn8c0zx 135 7 ) ) -RRB- cord-008426-ktn8c0zx 135 8 with with IN cord-008426-ktn8c0zx 135 9 the the DT cord-008426-ktn8c0zx 135 10 catalytic catalytic JJ cord-008426-ktn8c0zx 135 11 serine serine NN cord-008426-ktn8c0zx 135 12 site site NN cord-008426-ktn8c0zx 135 13 at at IN cord-008426-ktn8c0zx 135 14 residue residue NN cord-008426-ktn8c0zx 135 15 284 284 CD cord-008426-ktn8c0zx 135 16 ( ( -LRB- cord-008426-ktn8c0zx 135 17 underlined underline VBN cord-008426-ktn8c0zx 135 18 ) ) -RRB- cord-008426-ktn8c0zx 135 19 . . . cord-008426-ktn8c0zx 136 1 It -PRON- PRP cord-008426-ktn8c0zx 136 2 has have VBZ cord-008426-ktn8c0zx 136 3 been be VBN cord-008426-ktn8c0zx 136 4 suggested suggest VBN cord-008426-ktn8c0zx 136 5 ( ( -LRB- cord-008426-ktn8c0zx 137 1 Gorbalenya Gorbalenya NNP cord-008426-ktn8c0zx 137 2 et et NNP cord-008426-ktn8c0zx 137 3 al al NNP cord-008426-ktn8c0zx 137 4 . . . cord-008426-ktn8c0zx 138 1 , , , cord-008426-ktn8c0zx 138 2 1988 1988 CD cord-008426-ktn8c0zx 138 3 ) ) -RRB- cord-008426-ktn8c0zx 138 4 that that IN cord-008426-ktn8c0zx 138 5 this this DT cord-008426-ktn8c0zx 138 6 protease protease NN cord-008426-ktn8c0zx 138 7 could could MD cord-008426-ktn8c0zx 138 8 process process VB cord-008426-ktn8c0zx 138 9 the the DT cord-008426-ktn8c0zx 138 10 polyprotein polyprotein NN cord-008426-ktn8c0zx 138 11 to to IN cord-008426-ktn8c0zx 138 12 functional functional JJ cord-008426-ktn8c0zx 138 13 products product NNS cord-008426-ktn8c0zx 138 14 . . . cord-008426-ktn8c0zx 139 1 The the DT cord-008426-ktn8c0zx 139 2 C c NN cord-008426-ktn8c0zx 139 3 - - HYPH cord-008426-ktn8c0zx 139 4 terminal terminal NN cord-008426-ktn8c0zx 139 5 domain domain NN cord-008426-ktn8c0zx 139 6 of of IN cord-008426-ktn8c0zx 139 7 SBMV SBMV NNP cord-008426-ktn8c0zx 139 8 - - HYPH cord-008426-ktn8c0zx 139 9 B B NNP cord-008426-ktn8c0zx 139 10 ORF ORF NNP cord-008426-ktn8c0zx 139 11 2 2 CD cord-008426-ktn8c0zx 139 12 was be VBD cord-008426-ktn8c0zx 139 13 identified identify VBN cord-008426-ktn8c0zx 139 14 as as IN cord-008426-ktn8c0zx 139 15 the the DT cord-008426-ktn8c0zx 139 16 putative putative JJ cord-008426-ktn8c0zx 139 17 RNA RNA NNP cord-008426-ktn8c0zx 139 18 - - HYPH cord-008426-ktn8c0zx 139 19 dependent dependent JJ cord-008426-ktn8c0zx 139 20 RNA RNA NNP cord-008426-ktn8c0zx 139 21 polymerase polymerase NN cord-008426-ktn8c0zx 139 22 as as IN cord-008426-ktn8c0zx 139 23 it -PRON- PRP cord-008426-ktn8c0zx 139 24 contained contain VBD cord-008426-ktn8c0zx 139 25 the the DT cord-008426-ktn8c0zx 139 26 GDD GDD NNP cord-008426-ktn8c0zx 139 27 motif motif NN cord-008426-ktn8c0zx 139 28 ( ( -LRB- cord-008426-ktn8c0zx 139 29 Fig Fig NNP cord-008426-ktn8c0zx 139 30 . . NNP cord-008426-ktn8c0zx 139 31 2 2 CD cord-008426-ktn8c0zx 139 32 , , , cord-008426-ktn8c0zx 139 33 underlined underline VBN cord-008426-ktn8c0zx 139 34 ) ) -RRB- cord-008426-ktn8c0zx 139 35 . . . cord-008426-ktn8c0zx 140 1 This this DT cord-008426-ktn8c0zx 140 2 region region NN cord-008426-ktn8c0zx 140 3 shows show VBZ cord-008426-ktn8c0zx 140 4 high high JJ cord-008426-ktn8c0zx 140 5 homology homology NN cord-008426-ktn8c0zx 140 6 to to IN cord-008426-ktn8c0zx 140 7 those those DT cord-008426-ktn8c0zx 140 8 of of IN cord-008426-ktn8c0zx 140 9 SBMV SBMV NNP cord-008426-ktn8c0zx 140 10 - - HYPH cord-008426-ktn8c0zx 140 11 C C NNP cord-008426-ktn8c0zx 140 12 ( ( -LRB- cord-008426-ktn8c0zx 140 13 83 83 CD cord-008426-ktn8c0zx 140 14 % % NN cord-008426-ktn8c0zx 140 15 ) ) -RRB- cord-008426-ktn8c0zx 140 16 and and CC cord-008426-ktn8c0zx 140 17 RYMV RYMV NNP cord-008426-ktn8c0zx 140 18 ( ( -LRB- cord-008426-ktn8c0zx 140 19 71 71 CD cord-008426-ktn8c0zx 140 20 % % NN cord-008426-ktn8c0zx 140 21 ) ) -RRB- cord-008426-ktn8c0zx 141 1 ( ( -LRB- cord-008426-ktn8c0zx 141 2 Fig Fig NNP cord-008426-ktn8c0zx 141 3 . . NNP cord-008426-ktn8c0zx 141 4 4 4 CD cord-008426-ktn8c0zx 141 5 ) ) -RRB- cord-008426-ktn8c0zx 141 6 . . . cord-008426-ktn8c0zx 142 1 The the DT cord-008426-ktn8c0zx 142 2 C C NNP cord-008426-ktn8c0zx 142 3 - - HYPH cord-008426-ktn8c0zx 142 4 terminus terminus NN cord-008426-ktn8c0zx 142 5 also also RB cord-008426-ktn8c0zx 142 6 exhibited exhibit VBD cord-008426-ktn8c0zx 142 7 obvious obvious JJ cord-008426-ktn8c0zx 142 8 consensus consensus NN cord-008426-ktn8c0zx 142 9 with with IN cord-008426-ktn8c0zx 142 10 the the DT cord-008426-ktn8c0zx 142 11 proposed propose VBN cord-008426-ktn8c0zx 142 12 RNA RNA NNP cord-008426-ktn8c0zx 142 13 - - HYPH cord-008426-ktn8c0zx 142 14 dependent dependent JJ cord-008426-ktn8c0zx 142 15 RNA RNA NNP cord-008426-ktn8c0zx 142 16 polymerases polymerase NNS cord-008426-ktn8c0zx 142 17 of of IN cord-008426-ktn8c0zx 142 18 the the DT cord-008426-ktn8c0zx 142 19 luteoviruses luteoviruses NNP cord-008426-ktn8c0zx 142 20 beet beet NN cord-008426-ktn8c0zx 142 21 western western JJ cord-008426-ktn8c0zx 142 22 yelo yelo NNP cord-008426-ktn8c0zx 142 23 lows low NNS cord-008426-ktn8c0zx 142 24 virus virus NN cord-008426-ktn8c0zx 142 25 and and CC cord-008426-ktn8c0zx 142 26 potato potato NN cord-008426-ktn8c0zx 142 27 leafroll leafroll NNP cord-008426-ktn8c0zx 142 28 virus virus NN cord-008426-ktn8c0zx 142 29 ( ( -LRB- cord-008426-ktn8c0zx 142 30 Veldt Veldt NNP cord-008426-ktn8c0zx 142 31 et et FW cord-008426-ktn8c0zx 142 32 al al NNP cord-008426-ktn8c0zx 142 33 . . . cord-008426-ktn8c0zx 143 1 , , , cord-008426-ktn8c0zx 143 2 1988 1988 CD cord-008426-ktn8c0zx 143 3 ; ; : cord-008426-ktn8c0zx 143 4 Mayo Mayo NNP cord-008426-ktn8c0zx 143 5 et et NNP cord-008426-ktn8c0zx 143 6 aL aL NNP cord-008426-ktn8c0zx 143 7 , , , cord-008426-ktn8c0zx 143 8 1989 1989 CD cord-008426-ktn8c0zx 143 9 ) ) -RRB- cord-008426-ktn8c0zx 143 10 and and CC cord-008426-ktn8c0zx 143 11 the the DT cord-008426-ktn8c0zx 143 12 eight eight CD cord-008426-ktn8c0zx 143 13 conserved conserve VBN cord-008426-ktn8c0zx 143 14 motifs motif NNS cord-008426-ktn8c0zx 144 1 ( ( -LRB- cord-008426-ktn8c0zx 144 2 P p NN cord-008426-ktn8c0zx 144 3 I i NN cord-008426-ktn8c0zx 144 4 - - HYPH cord-008426-ktn8c0zx 144 5 P p NN cord-008426-ktn8c0zx 144 6 VIII VIII NNP cord-008426-ktn8c0zx 144 7 ) ) -RRB- cord-008426-ktn8c0zx 144 8 , , , cord-008426-ktn8c0zx 144 9 defined define VBN cord-008426-ktn8c0zx 144 10 by by IN cord-008426-ktn8c0zx 144 11 Koonin Koonin NNP cord-008426-ktn8c0zx 144 12 ( ( -LRB- cord-008426-ktn8c0zx 144 13 1991 1991 CD cord-008426-ktn8c0zx 144 14 ) ) -RRB- cord-008426-ktn8c0zx 144 15 , , , cord-008426-ktn8c0zx 144 16 are be VBP cord-008426-ktn8c0zx 144 17 identified identify VBN cord-008426-ktn8c0zx 144 18 in in IN cord-008426-ktn8c0zx 144 19 Fig Fig NNP cord-008426-ktn8c0zx 144 20 . . . cord-008426-ktn8c0zx 145 1 2 2 LS cord-008426-ktn8c0zx 145 2 . . . cord-008426-ktn8c0zx 146 1 Such such JJ cord-008426-ktn8c0zx 146 2 similarities similarity NNS cord-008426-ktn8c0zx 146 3 have have VBP cord-008426-ktn8c0zx 146 4 been be VBN cord-008426-ktn8c0zx 146 5 used use VBN cord-008426-ktn8c0zx 146 6 to to TO cord-008426-ktn8c0zx 146 7 evaluate evaluate VB cord-008426-ktn8c0zx 146 8 the the DT cord-008426-ktn8c0zx 146 9 taxonomic taxonomic JJ cord-008426-ktn8c0zx 146 10 position position NN cord-008426-ktn8c0zx 146 11 of of IN cord-008426-ktn8c0zx 146 12 SBMV SBMV NNP cord-008426-ktn8c0zx 146 13 - - HYPH cord-008426-ktn8c0zx 146 14 C C NNP cord-008426-ktn8c0zx 146 15 in in IN cord-008426-ktn8c0zx 146 16 relation relation NN cord-008426-ktn8c0zx 146 17 to to IN cord-008426-ktn8c0zx 146 18 other other JJ cord-008426-ktn8c0zx 146 19 positivestrand positivestrand NN cord-008426-ktn8c0zx 146 20 RNA RNA NNP cord-008426-ktn8c0zx 146 21 viruses virus NNS cord-008426-ktn8c0zx 146 22 ( ( -LRB- cord-008426-ktn8c0zx 146 23 Habili Habili NNP cord-008426-ktn8c0zx 146 24 and and CC cord-008426-ktn8c0zx 146 25 Symons Symons NNP cord-008426-ktn8c0zx 146 26 1989 1989 CD cord-008426-ktn8c0zx 146 27 ; ; : cord-008426-ktn8c0zx 146 28 Poch Poch NNP cord-008426-ktn8c0zx 146 29 et et NNP cord-008426-ktn8c0zx 146 30 aL aL NNP cord-008426-ktn8c0zx 146 31 , , , cord-008426-ktn8c0zx 146 32 1989 1989 CD cord-008426-ktn8c0zx 146 33 ; ; : cord-008426-ktn8c0zx 146 34 Koonin Koonin NNP cord-008426-ktn8c0zx 146 35 , , , cord-008426-ktn8c0zx 146 36 1991 1991 CD cord-008426-ktn8c0zx 146 37 ; ; : cord-008426-ktn8c0zx 146 38 Koonin Koonin NNP cord-008426-ktn8c0zx 146 39 and and CC cord-008426-ktn8c0zx 146 40 Dolja Dolja NNP cord-008426-ktn8c0zx 146 41 , , , cord-008426-ktn8c0zx 146 42 1993 1993 CD cord-008426-ktn8c0zx 146 43 ) ) -RRB- cord-008426-ktn8c0zx 146 44 and and CC cord-008426-ktn8c0zx 146 45 are be VBP cord-008426-ktn8c0zx 146 46 supported support VBN cord-008426-ktn8c0zx 146 47 by by IN cord-008426-ktn8c0zx 146 48 the the DT cord-008426-ktn8c0zx 146 49 sequence sequence NN cord-008426-ktn8c0zx 146 50 of of IN cord-008426-ktn8c0zx 146 51 SBMV SBMV NNP cord-008426-ktn8c0zx 146 52 - - HYPH cord-008426-ktn8c0zx 146 53 B. B. NNP cord-008426-ktn8c0zx 146 54 Biochemical Biochemical NNP cord-008426-ktn8c0zx 146 55 processes process NNS cord-008426-ktn8c0zx 146 56 such such JJ cord-008426-ktn8c0zx 146 57 as as IN cord-008426-ktn8c0zx 146 58 replication replication NN cord-008426-ktn8c0zx 146 59 , , , cord-008426-ktn8c0zx 146 60 recombination recombination NN cord-008426-ktn8c0zx 146 61 and and CC cord-008426-ktn8c0zx 146 62 repair repair NN cord-008426-ktn8c0zx 146 63 , , , cord-008426-ktn8c0zx 146 64 translation translation NN cord-008426-ktn8c0zx 146 65 , , , cord-008426-ktn8c0zx 146 66 and and CC cord-008426-ktn8c0zx 146 67 transcription transcription NN cord-008426-ktn8c0zx 146 68 are be VBP cord-008426-ktn8c0zx 146 69 coupled.to coupled.to , cord-008426-ktn8c0zx 146 70 nucleoside nucleoside NN cord-008426-ktn8c0zx 146 71 triphosphate triphosphate NN cord-008426-ktn8c0zx 146 72 hydrolysis hydrolysis NN cord-008426-ktn8c0zx 146 73 and and CC cord-008426-ktn8c0zx 146 74 viral viral JJ cord-008426-ktn8c0zx 146 75 genomes genome NNS cord-008426-ktn8c0zx 146 76 are be VBP cord-008426-ktn8c0zx 146 77 thought think VBN cord-008426-ktn8c0zx 146 78 to to TO cord-008426-ktn8c0zx 146 79 have have VB cord-008426-ktn8c0zx 146 80 specific specific JJ cord-008426-ktn8c0zx 146 81 domains domain NNS cord-008426-ktn8c0zx 146 82 which which WDT cord-008426-ktn8c0zx 146 83 have have VBP cord-008426-ktn8c0zx 146 84 nucleotide nucleotide JJ cord-008426-ktn8c0zx 146 85 binding binding NN cord-008426-ktn8c0zx 146 86 functions function NNS cord-008426-ktn8c0zx 146 87 . . . cord-008426-ktn8c0zx 147 1 We -PRON- PRP cord-008426-ktn8c0zx 147 2 could could MD cord-008426-ktn8c0zx 147 3 not not RB cord-008426-ktn8c0zx 147 4 find find VB cord-008426-ktn8c0zx 147 5 any any DT cord-008426-ktn8c0zx 147 6 obvious obvious JJ cord-008426-ktn8c0zx 147 7 nucleotide nucleotide NN cord-008426-ktn8c0zx 147 8 - - HYPH cord-008426-ktn8c0zx 147 9 binding bind VBG cord-008426-ktn8c0zx 147 10 domain domain NN cord-008426-ktn8c0zx 147 11 in in IN cord-008426-ktn8c0zx 147 12 the the DT cord-008426-ktn8c0zx 147 13 SBMV SBMV NNP cord-008426-ktn8c0zx 147 14 - - HYPH cord-008426-ktn8c0zx 147 15 B b NN cord-008426-ktn8c0zx 147 16 sequence sequence NN cord-008426-ktn8c0zx 148 1 Comparison comparison NN cord-008426-ktn8c0zx 148 2 of of IN cord-008426-ktn8c0zx 148 3 ORF ORF NNP cord-008426-ktn8c0zx 148 4 3 3 CD cord-008426-ktn8c0zx 148 5 of of IN cord-008426-ktn8c0zx 148 6 SBMV SBMV NNP cord-008426-ktn8c0zx 148 7 - - HYPH cord-008426-ktn8c0zx 148 8 B B NNP cord-008426-ktn8c0zx 148 9 with with IN cord-008426-ktn8c0zx 148 10 ORF ORF NNP cord-008426-ktn8c0zx 148 11 4 4 CD cord-008426-ktn8c0zx 148 12 of of IN cord-008426-ktn8c0zx 148 13 SBMV SBMV NNP cord-008426-ktn8c0zx 148 14 - - HYPH cord-008426-ktn8c0zx 148 15 C C NNP cord-008426-ktn8c0zx 148 16 and and CC cord-008426-ktn8c0zx 148 17 RYMV RYMV NNP cord-008426-ktn8c0zx 148 18 . . . cord-008426-ktn8c0zx 149 1 b% b% LS cord-008426-ktn8c0zx 150 1 Nucleic nucleic JJ cord-008426-ktn8c0zx 150 2 acid acid NN cord-008426-ktn8c0zx 150 3 identity identity NN cord-008426-ktn8c0zx 150 4 , , , cord-008426-ktn8c0zx 150 5 protein protein NN cord-008426-ktn8c0zx 150 6 identity identity NN cord-008426-ktn8c0zx 150 7 , , , cord-008426-ktn8c0zx 150 8 protein protein NN cord-008426-ktn8c0zx 150 9 familial familial JJ cord-008426-ktn8c0zx 150 10 similarity similarity NN cord-008426-ktn8c0zx 150 11 ( ( -LRB- cord-008426-ktn8c0zx 151 1 using use VBG cord-008426-ktn8c0zx 151 2 amino amino NN cord-008426-ktn8c0zx 151 3 acid acid NN cord-008426-ktn8c0zx 151 4 grouping grouping NN cord-008426-ktn8c0zx 151 5 of of IN cord-008426-ktn8c0zx 151 6 Dayhoff Dayhoff NNP cord-008426-ktn8c0zx 151 7 et et NNP cord-008426-ktn8c0zx 151 8 aL aL NNP cord-008426-ktn8c0zx 151 9 ( ( -LRB- cord-008426-ktn8c0zx 151 10 1983 1983 CD cord-008426-ktn8c0zx 151 11 ) ) -RRB- cord-008426-ktn8c0zx 151 12 ) ) -RRB- cord-008426-ktn8c0zx 151 13 . . . cord-008426-ktn8c0zx 152 1 ° ° NNP cord-008426-ktn8c0zx 152 2 100 100 CD cord-008426-ktn8c0zx 152 3 % % NN cord-008426-ktn8c0zx 152 4 identity identity NN cord-008426-ktn8c0zx 152 5 . . . cord-008426-ktn8c0zx 153 1 I -PRON- PRP cord-008426-ktn8c0zx 153 2 _SP cord-008426-ktn8c0zx 154 1 I -PRON- PRP cord-008426-ktn8c0zx 154 2 _SP cord-008426-ktn8c0zx 155 1 I -PRON- PRP cord-008426-ktn8c0zx 155 2 _SP cord-008426-ktn8c0zx 156 1 I -PRON- PRP cord-008426-ktn8c0zx 156 2 _SP cord-008426-ktn8c0zx 157 1 I -PRON- PRP cord-008426-ktn8c0zx 157 2 _SP cord-008426-ktn8c0zx 158 1 I -PRON- PRP cord-008426-ktn8c0zx 158 2 _SP cord-008426-ktn8c0zx 159 1 I -PRON- PRP cord-008426-ktn8c0zx 159 2 _SP cord-008426-ktn8c0zx 160 1 I -PRON- PRP cord-008426-ktn8c0zx 160 2 _SP cord-008426-ktn8c0zx 161 1 200 200 CD cord-008426-ktn8c0zx 161 2 resembling resemble VBG cord-008426-ktn8c0zx 161 3 the the DT cord-008426-ktn8c0zx 161 4 hydrophobic hydrophobic JJ cord-008426-ktn8c0zx 161 5 stretches stretch NNS cord-008426-ktn8c0zx 161 6 proposed propose VBN cord-008426-ktn8c0zx 161 7 as as IN cord-008426-ktn8c0zx 161 8 NTPbinding ntpbinde VBG cord-008426-ktn8c0zx 161 9 proteins protein NNS cord-008426-ktn8c0zx 161 10 in in IN cord-008426-ktn8c0zx 161 11 the the DT cord-008426-ktn8c0zx 161 12 potyviruses potyviruse NNS cord-008426-ktn8c0zx 161 13 , , , cord-008426-ktn8c0zx 161 14 comoviruses comoviruses NNP cord-008426-ktn8c0zx 161 15 , , , cord-008426-ktn8c0zx 161 16 and and CC cord-008426-ktn8c0zx 161 17 picornaviruses picornavirus NNS cord-008426-ktn8c0zx 161 18 ( ( -LRB- cord-008426-ktn8c0zx 161 19 Gorbalenya Gorbalenya NNP cord-008426-ktn8c0zx 161 20 et et NNP cord-008426-ktn8c0zx 161 21 al al NNP cord-008426-ktn8c0zx 161 22 . . NNP cord-008426-ktn8c0zx 161 23 , , , cord-008426-ktn8c0zx 161 24 1988 1988 CD cord-008426-ktn8c0zx 161 25 ; ; : cord-008426-ktn8c0zx 161 26 Gorbalenya Gorbalenya NNP cord-008426-ktn8c0zx 161 27 and and CC cord-008426-ktn8c0zx 161 28 Koonin Koonin NNP cord-008426-ktn8c0zx 161 29 , , , cord-008426-ktn8c0zx 161 30 1989 1989 CD cord-008426-ktn8c0zx 161 31 ) ) -RRB- cord-008426-ktn8c0zx 161 32 . . . cord-008426-ktn8c0zx 162 1 Wu Wu NNP cord-008426-ktn8c0zx 162 2 et et NNP cord-008426-ktn8c0zx 162 3 al al NNP cord-008426-ktn8c0zx 162 4 . . . cord-008426-ktn8c0zx 163 1 ( ( -LRB- cord-008426-ktn8c0zx 163 2 1987 1987 CD cord-008426-ktn8c0zx 163 3 ) ) -RRB- cord-008426-ktn8c0zx 163 4 proposed propose VBD cord-008426-ktn8c0zx 163 5 a a DT cord-008426-ktn8c0zx 163 6 putative putative JJ cord-008426-ktn8c0zx 163 7 ATPbinding atpbinding NN cord-008426-ktn8c0zx 163 8 domain domain NN cord-008426-ktn8c0zx 163 9 in in IN cord-008426-ktn8c0zx 163 10 SBMV SBMV NNP cord-008426-ktn8c0zx 163 11 - - HYPH cord-008426-ktn8c0zx 163 12 C C NNP cord-008426-ktn8c0zx 163 13 based base VBN cord-008426-ktn8c0zx 163 14 on on IN cord-008426-ktn8c0zx 163 15 a a DT cord-008426-ktn8c0zx 163 16 loose loose JJ cord-008426-ktn8c0zx 163 17 homology homology NN cord-008426-ktn8c0zx 163 18 to to IN cord-008426-ktn8c0zx 163 19 an an DT cord-008426-ktn8c0zx 163 20 ATP ATP NNP cord-008426-ktn8c0zx 163 21 - - HYPH cord-008426-ktn8c0zx 163 22 binding bind VBG cord-008426-ktn8c0zx 163 23 consensus consensus NN cord-008426-ktn8c0zx 163 24 sequence sequence NN cord-008426-ktn8c0zx 163 25 derived derive VBN cord-008426-ktn8c0zx 163 26 mainly mainly RB cord-008426-ktn8c0zx 163 27 from from IN cord-008426-ktn8c0zx 163 28 an an DT cord-008426-ktn8c0zx 163 29 alignment alignment NN cord-008426-ktn8c0zx 163 30 of of IN cord-008426-ktn8c0zx 163 31 picornaviral picornaviral JJ cord-008426-ktn8c0zx 163 32 sequences sequence NNS cord-008426-ktn8c0zx 163 33 . . . cord-008426-ktn8c0zx 164 1 While while IN cord-008426-ktn8c0zx 164 2 this this DT cord-008426-ktn8c0zx 164 3 designation designation NN cord-008426-ktn8c0zx 164 4 is be VBZ cord-008426-ktn8c0zx 164 5 fairly fairly RB cord-008426-ktn8c0zx 164 6 speculative speculative JJ cord-008426-ktn8c0zx 164 7 , , , cord-008426-ktn8c0zx 164 8 this this DT cord-008426-ktn8c0zx 164 9 motif motif NN cord-008426-ktn8c0zx 164 10 is be VBZ cord-008426-ktn8c0zx 164 11 well well RB cord-008426-ktn8c0zx 164 12 conserved conserve VBN cord-008426-ktn8c0zx 164 13 between between IN cord-008426-ktn8c0zx 164 14 SBMV SBMV NNP cord-008426-ktn8c0zx 164 15 - - HYPH cord-008426-ktn8c0zx 164 16 B B NNP cord-008426-ktn8c0zx 164 17 and and CC cord-008426-ktn8c0zx 164 18 SBMV SBMV NNP cord-008426-ktn8c0zx 164 19 - - HYPH cord-008426-ktn8c0zx 164 20 C C NNP cord-008426-ktn8c0zx 164 21 sequences sequence NNS cord-008426-ktn8c0zx 164 22 in in IN cord-008426-ktn8c0zx 164 23 two two CD cord-008426-ktn8c0zx 164 24 regions region NNS cord-008426-ktn8c0zx 164 25 ( ( -LRB- cord-008426-ktn8c0zx 164 26 AS as IN cord-008426-ktn8c0zx 164 27 1 1 CD cord-008426-ktn8c0zx 164 28 and and CC cord-008426-ktn8c0zx 164 29 AB AB NNP cord-008426-ktn8c0zx 164 30 2 2 CD cord-008426-ktn8c0zx 164 31 ) ) -RRB- cord-008426-ktn8c0zx 165 1 ( ( -LRB- cord-008426-ktn8c0zx 165 2 Fig Fig NNP cord-008426-ktn8c0zx 165 3 . . NNP cord-008426-ktn8c0zx 165 4 2 2 CD cord-008426-ktn8c0zx 165 5 ) ) -RRB- cord-008426-ktn8c0zx 165 6 . . . cord-008426-ktn8c0zx 166 1 On on IN cord-008426-ktn8c0zx 166 2 the the DT cord-008426-ktn8c0zx 166 3 other other JJ cord-008426-ktn8c0zx 166 4 hand hand NN cord-008426-ktn8c0zx 166 5 , , , cord-008426-ktn8c0zx 166 6 possibly possibly RB cord-008426-ktn8c0zx 166 7 significantly significantly RB cord-008426-ktn8c0zx 166 8 , , , cord-008426-ktn8c0zx 166 9 the the DT cord-008426-ktn8c0zx 166 10 sequence sequence NN cord-008426-ktn8c0zx 166 11 lacks lack VBZ cord-008426-ktn8c0zx 166 12 the the DT cord-008426-ktn8c0zx 166 13 consensus consensus NN cord-008426-ktn8c0zx 166 14 motif motif NN cord-008426-ktn8c0zx 166 15 GKS GKS NNP cord-008426-ktn8c0zx 166 16 / / SYM cord-008426-ktn8c0zx 166 17 T T NNP cord-008426-ktn8c0zx 166 18 , , , cord-008426-ktn8c0zx 166 19 thought think VBD cord-008426-ktn8c0zx 166 20 to to TO cord-008426-ktn8c0zx 166 21 be be VB cord-008426-ktn8c0zx 166 22 the the DT cord-008426-ktn8c0zx 166 23 general general JJ cord-008426-ktn8c0zx 166 24 " " `` cord-008426-ktn8c0zx 166 25 signature signature NN cord-008426-ktn8c0zx 166 26 " " '' cord-008426-ktn8c0zx 166 27 sequence sequence NN cord-008426-ktn8c0zx 166 28 of of IN cord-008426-ktn8c0zx 166 29 the the DT cord-008426-ktn8c0zx 166 30 helicase helicase NN cord-008426-ktn8c0zx 166 31 domain domain NN cord-008426-ktn8c0zx 166 32 in in IN cord-008426-ktn8c0zx 166 33 viral viral JJ cord-008426-ktn8c0zx 166 34 RNA RNA NNP cord-008426-ktn8c0zx 166 35 polymerase polymerase NN cord-008426-ktn8c0zx 166 36 . . . cord-008426-ktn8c0zx 167 1 However however RB cord-008426-ktn8c0zx 167 2 , , , cord-008426-ktn8c0zx 167 3 the the DT cord-008426-ktn8c0zx 167 4 absence absence NN cord-008426-ktn8c0zx 167 5 of of IN cord-008426-ktn8c0zx 167 6 a a DT cord-008426-ktn8c0zx 167 7 clear clear JJ cord-008426-ktn8c0zx 167 8 helicase helicase NN cord-008426-ktn8c0zx 167 9 domain domain NN cord-008426-ktn8c0zx 167 10 in in IN cord-008426-ktn8c0zx 167 11 SBMV SBMV NNP cord-008426-ktn8c0zx 167 12 sequences sequence NNS cord-008426-ktn8c0zx 167 13 is be VBZ cord-008426-ktn8c0zx 167 14 consistent consistent JJ cord-008426-ktn8c0zx 167 15 with with IN cord-008426-ktn8c0zx 167 16 the the DT cord-008426-ktn8c0zx 167 17 observation observation NN cord-008426-ktn8c0zx 167 18 that that IN cord-008426-ktn8c0zx 167 19 no no DT cord-008426-ktn8c0zx 167 20 such such JJ cord-008426-ktn8c0zx 167 21 viral viral RB cord-008426-ktn8c0zx 167 22 - - HYPH cord-008426-ktn8c0zx 167 23 encoded encode VBN cord-008426-ktn8c0zx 167 24 function function NN cord-008426-ktn8c0zx 167 25 has have VBZ cord-008426-ktn8c0zx 167 26 been be VBN cord-008426-ktn8c0zx 167 27 identified identify VBN cord-008426-ktn8c0zx 167 28 in in IN cord-008426-ktn8c0zx 167 29 viruses virus NNS cord-008426-ktn8c0zx 167 30 with with IN cord-008426-ktn8c0zx 167 31 a a DT cord-008426-ktn8c0zx 167 32 compact compact NN cord-008426-ktn8c0zx 167 33 ( ( -LRB- cord-008426-ktn8c0zx 167 34 < < NNP cord-008426-ktn8c0zx 167 35 5 5 CD cord-008426-ktn8c0zx 167 36 kb kb NNP cord-008426-ktn8c0zx 167 37 ) ) -RRB- cord-008426-ktn8c0zx 167 38 genome genome NN cord-008426-ktn8c0zx 167 39 ( ( -LRB- cord-008426-ktn8c0zx 167 40 Gorbalenya Gorbalenya NNP cord-008426-ktn8c0zx 167 41 and and CC cord-008426-ktn8c0zx 167 42 Koonin Koonin NNP cord-008426-ktn8c0zx 167 43 , , , cord-008426-ktn8c0zx 167 44 1989 1989 CD cord-008426-ktn8c0zx 167 45 ) ) -RRB- cord-008426-ktn8c0zx 167 46 . . . cord-008426-ktn8c0zx 168 1 For for IN cord-008426-ktn8c0zx 168 2 the the DT cord-008426-ktn8c0zx 168 3 majority majority NN cord-008426-ktn8c0zx 168 4 of of IN cord-008426-ktn8c0zx 168 5 VPg vpg NN cord-008426-ktn8c0zx 168 6 - - HYPH cord-008426-ktn8c0zx 168 7 containing contain VBG cord-008426-ktn8c0zx 168 8 viruses virus NNS cord-008426-ktn8c0zx 168 9 , , , cord-008426-ktn8c0zx 168 10 it -PRON- PRP cord-008426-ktn8c0zx 168 11 has have VBZ cord-008426-ktn8c0zx 168 12 been be VBN cord-008426-ktn8c0zx 168 13 shown show VBN cord-008426-ktn8c0zx 168 14 that that IN cord-008426-ktn8c0zx 168 15 this this DT cord-008426-ktn8c0zx 168 16 protein protein NN cord-008426-ktn8c0zx 168 17 is be VBZ cord-008426-ktn8c0zx 168 18 encoded encode VBN cord-008426-ktn8c0zx 168 19 within within IN cord-008426-ktn8c0zx 168 20 a a DT cord-008426-ktn8c0zx 168 21 polyprotein polyprotein JJ cord-008426-ktn8c0zx 168 22 sequence sequence NN cord-008426-ktn8c0zx 168 23 of of IN cord-008426-ktn8c0zx 168 24 ( ( -LRB- cord-008426-ktn8c0zx 168 25 Helicase)-VPg helicase)-vpg JJ cord-008426-ktn8c0zx 168 26 - - HYPH cord-008426-ktn8c0zx 168 27 protease protease NN cord-008426-ktn8c0zx 168 28 - - HYPH cord-008426-ktn8c0zx 168 29 RdRp rdrp NN cord-008426-ktn8c0zx 168 30 ( ( -LRB- cord-008426-ktn8c0zx 168 31 supergroup supergroup NN cord-008426-ktn8c0zx 168 32 I -PRON- PRP cord-008426-ktn8c0zx 168 33 type type NN cord-008426-ktn8c0zx 168 34 ) ) -RRB- cord-008426-ktn8c0zx 169 1 ( ( -LRB- cord-008426-ktn8c0zx 169 2 Dolja Dolja NNP cord-008426-ktn8c0zx 169 3 and and CC cord-008426-ktn8c0zx 169 4 Carrington Carrington NNP cord-008426-ktn8c0zx 169 5 , , , cord-008426-ktn8c0zx 169 6 1992 1992 CD cord-008426-ktn8c0zx 169 7 ) ) -RRB- cord-008426-ktn8c0zx 169 8 . . . cord-008426-ktn8c0zx 170 1 Wu Wu NNP cord-008426-ktn8c0zx 170 2 eta/. eta/. NNP cord-008426-ktn8c0zx 170 3 ( ( -LRB- cord-008426-ktn8c0zx 170 4 1987 1987 CD cord-008426-ktn8c0zx 170 5 ) ) -RRB- cord-008426-ktn8c0zx 170 6 identified identify VBD cord-008426-ktn8c0zx 170 7 a a DT cord-008426-ktn8c0zx 170 8 putative putative JJ cord-008426-ktn8c0zx 170 9 VPg VPg NNS cord-008426-ktn8c0zx 170 10 sequence sequence NN cord-008426-ktn8c0zx 170 11 at at IN cord-008426-ktn8c0zx 170 12 residues residue NNS cord-008426-ktn8c0zx 170 13 500 500 CD cord-008426-ktn8c0zx 170 14 - - SYM cord-008426-ktn8c0zx 170 15 519 519 CD cord-008426-ktn8c0zx 170 16 0fSBMV 0fsbmv CD cord-008426-ktn8c0zx 170 17 - - HYPH cord-008426-ktn8c0zx 170 18 C c NN cord-008426-ktn8c0zx 170 19 , , , cord-008426-ktn8c0zx 170 20 based base VBN cord-008426-ktn8c0zx 170 21 on on IN cord-008426-ktn8c0zx 170 22 a a DT cord-008426-ktn8c0zx 170 23 loose loose JJ cord-008426-ktn8c0zx 170 24 homologyto homologyto NN cord-008426-ktn8c0zx 170 25 several several JJ cord-008426-ktn8c0zx 170 26 known know VBN cord-008426-ktn8c0zx 170 27 sequences sequence NNS cord-008426-ktn8c0zx 170 28 . . . cord-008426-ktn8c0zx 171 1 As as IN cord-008426-ktn8c0zx 171 2 noted note VBN cord-008426-ktn8c0zx 171 3 by by IN cord-008426-ktn8c0zx 171 4 Gorbalenya Gorbalenya NNP cord-008426-ktn8c0zx 171 5 et et NNP cord-008426-ktn8c0zx 171 6 al al NNP cord-008426-ktn8c0zx 171 7 . . . cord-008426-ktn8c0zx 172 1 ( ( -LRB- cord-008426-ktn8c0zx 172 2 1988 1988 CD cord-008426-ktn8c0zx 172 3 ) ) -RRB- cord-008426-ktn8c0zx 173 1 the the DT cord-008426-ktn8c0zx 173 2 location location NN cord-008426-ktn8c0zx 173 3 of of IN cord-008426-ktn8c0zx 173 4 the the DT cord-008426-ktn8c0zx 173 5 VPg VPg NNS cord-008426-ktn8c0zx 173 6 in in IN cord-008426-ktn8c0zx 173 7 this this DT cord-008426-ktn8c0zx 173 8 region region NN cord-008426-ktn8c0zx 173 9 is be VBZ cord-008426-ktn8c0zx 173 10 inconsistent inconsistent JJ cord-008426-ktn8c0zx 173 11 with with IN cord-008426-ktn8c0zx 173 12 the the DT cord-008426-ktn8c0zx 173 13 proposed propose VBN cord-008426-ktn8c0zx 173 14 model model NN cord-008426-ktn8c0zx 173 15 of of IN cord-008426-ktn8c0zx 173 16 the the DT cord-008426-ktn8c0zx 173 17 genome genome NN cord-008426-ktn8c0zx 173 18 organization organization NN cord-008426-ktn8c0zx 173 19 of of IN cord-008426-ktn8c0zx 173 20 ORF ORF NNP cord-008426-ktn8c0zx 173 21 2 2 CD cord-008426-ktn8c0zx 173 22 taking take VBG cord-008426-ktn8c0zx 173 23 into into IN cord-008426-ktn8c0zx 173 24 account account NN cord-008426-ktn8c0zx 173 25 the the DT cord-008426-ktn8c0zx 173 26 putative putative JJ cord-008426-ktn8c0zx 173 27 identification identification NN cord-008426-ktn8c0zx 173 28 of of IN cord-008426-ktn8c0zx 173 29 the the DT cord-008426-ktn8c0zx 173 30 protease protease NN cord-008426-ktn8c0zx 173 31 domain domain NN cord-008426-ktn8c0zx 173 32 as as IN cord-008426-ktn8c0zx 173 33 described describe VBN cord-008426-ktn8c0zx 173 34 earlier early RBR cord-008426-ktn8c0zx 173 35 . . . cord-008426-ktn8c0zx 174 1 Should Should MD cord-008426-ktn8c0zx 174 2 the the DT cord-008426-ktn8c0zx 174 3 VPg VPg NNS cord-008426-ktn8c0zx 174 4 cistron cistron NN cord-008426-ktn8c0zx 174 5 be be VB cord-008426-ktn8c0zx 174 6 located locate VBN cord-008426-ktn8c0zx 174 7 at at IN cord-008426-ktn8c0zx 174 8 the the DT cord-008426-ktn8c0zx 174 9 NHz nhz NN cord-008426-ktn8c0zx 174 10 - - HYPH cord-008426-ktn8c0zx 174 11 terminal terminal JJ cord-008426-ktn8c0zx 174 12 end end NN cord-008426-ktn8c0zx 174 13 as as IN cord-008426-ktn8c0zx 174 14 proposed propose VBN cord-008426-ktn8c0zx 174 15 , , , cord-008426-ktn8c0zx 174 16 the the DT cord-008426-ktn8c0zx 174 17 lack lack NN cord-008426-ktn8c0zx 174 18 of of IN cord-008426-ktn8c0zx 174 19 homology homology NN cord-008426-ktn8c0zx 174 20 in in IN cord-008426-ktn8c0zx 174 21 this this DT cord-008426-ktn8c0zx 174 22 region region NN cord-008426-ktn8c0zx 174 23 between between IN cord-008426-ktn8c0zx 174 24 the the DT cord-008426-ktn8c0zx 174 25 two two CD cord-008426-ktn8c0zx 174 26 strains strain NNS cord-008426-ktn8c0zx 174 27 may may MD cord-008426-ktn8c0zx 174 28 indicate indicate VB cord-008426-ktn8c0zx 174 29 that that IN cord-008426-ktn8c0zx 174 30 the the DT cord-008426-ktn8c0zx 174 31 viruses virus NNS cord-008426-ktn8c0zx 174 32 possess possess VBP cord-008426-ktn8c0zx 174 33 different different JJ cord-008426-ktn8c0zx 174 34 species specie NNS cord-008426-ktn8c0zx 174 35 of of IN cord-008426-ktn8c0zx 174 36 the the DT cord-008426-ktn8c0zx 174 37 protein protein NN cord-008426-ktn8c0zx 174 38 . . . cord-008426-ktn8c0zx 175 1 The the DT cord-008426-ktn8c0zx 175 2 dissimilar dissimilar JJ cord-008426-ktn8c0zx 175 3 sizes size NNS cord-008426-ktn8c0zx 175 4 of of IN cord-008426-ktn8c0zx 175 5 the the DT cord-008426-ktn8c0zx 175 6 VPg VPg NNS cord-008426-ktn8c0zx 175 7 protein protein NN cord-008426-ktn8c0zx 175 8 between between IN cord-008426-ktn8c0zx 175 9 the the DT cord-008426-ktn8c0zx 175 10 two two CD cord-008426-ktn8c0zx 175 11 strains strain NNS cord-008426-ktn8c0zx 175 12 ( ( -LRB- cord-008426-ktn8c0zx 175 13 Mang Mang NNP cord-008426-ktn8c0zx 175 14 et et FW cord-008426-ktn8c0zx 175 15 al al NNP cord-008426-ktn8c0zx 175 16 . . NNP cord-008426-ktn8c0zx 175 17 , , , cord-008426-ktn8c0zx 175 18 1982 1982 CD cord-008426-ktn8c0zx 175 19 ) ) -RRB- cord-008426-ktn8c0zx 175 20 may may MD cord-008426-ktn8c0zx 175 21 support support VB cord-008426-ktn8c0zx 175 22 this this DT cord-008426-ktn8c0zx 175 23 assumption assumption NN cord-008426-ktn8c0zx 175 24 . . . cord-008426-ktn8c0zx 176 1 Coat coat NN cord-008426-ktn8c0zx 176 2 protein protein NN cord-008426-ktn8c0zx 176 3 ORF ORF NNP cord-008426-ktn8c0zx 176 4 3 3 CD cord-008426-ktn8c0zx 176 5 , , , cord-008426-ktn8c0zx 176 6 from from IN cord-008426-ktn8c0zx 176 7 nucleotide nucleotide JJ cord-008426-ktn8c0zx 176 8 3195 3195 CD cord-008426-ktn8c0zx 176 9 to to TO cord-008426-ktn8c0zx 176 10 nucleotide nucleotide JJ cord-008426-ktn8c0zx 176 11 3981 3981 CD cord-008426-ktn8c0zx 176 12 , , , cord-008426-ktn8c0zx 176 13 encodes encode VBZ cord-008426-ktn8c0zx 176 14 a a DT cord-008426-ktn8c0zx 176 15 putative putative JJ cord-008426-ktn8c0zx 176 16 protein protein NN cord-008426-ktn8c0zx 176 17 of of IN cord-008426-ktn8c0zx 176 18 Mr Mr NNP cord-008426-ktn8c0zx 176 19 28,107 28,107 CD cord-008426-ktn8c0zx 176 20 and and CC cord-008426-ktn8c0zx 176 21 its -PRON- PRP$ cord-008426-ktn8c0zx 176 22 allocation allocation NN cord-008426-ktn8c0zx 176 23 as as IN cord-008426-ktn8c0zx 176 24 the the DT cord-008426-ktn8c0zx 176 25 coat coat NN cord-008426-ktn8c0zx 176 26 protein protein NN cord-008426-ktn8c0zx 176 27 cistron cistron NNP cord-008426-ktn8c0zx 176 28 is be VBZ cord-008426-ktn8c0zx 176 29 supported support VBN cord-008426-ktn8c0zx 176 30 by by IN cord-008426-ktn8c0zx 176 31 the the DT cord-008426-ktn8c0zx 176 32 close close JJ cord-008426-ktn8c0zx 176 33 similarity similarity NN cord-008426-ktn8c0zx 176 34 of of IN cord-008426-ktn8c0zx 176 35 its -PRON- PRP$ cord-008426-ktn8c0zx 176 36 amino amino NN cord-008426-ktn8c0zx 176 37 acid acid NN cord-008426-ktn8c0zx 176 38 content content NN cord-008426-ktn8c0zx 176 39 with with IN cord-008426-ktn8c0zx 176 40 that that DT cord-008426-ktn8c0zx 176 41 published publish VBN cord-008426-ktn8c0zx 176 42 for for IN cord-008426-ktn8c0zx 176 43 isolated isolate VBN cord-008426-ktn8c0zx 176 44 SBMV SBMV NNP cord-008426-ktn8c0zx 176 45 - - HYPH cord-008426-ktn8c0zx 176 46 B b NN cord-008426-ktn8c0zx 176 47 capsid capsid NN cord-008426-ktn8c0zx 176 48 proteins protein NNS cord-008426-ktn8c0zx 176 49 ( ( -LRB- cord-008426-ktn8c0zx 176 50 Tremaine Tremaine NNP cord-008426-ktn8c0zx 176 51 , , , cord-008426-ktn8c0zx 176 52 1966 1966 CD cord-008426-ktn8c0zx 176 53 ; ; . cord-008426-ktn8c0zx 177 1 Ghabrial Ghabrial NNP cord-008426-ktn8c0zx 177 2 et et NNP cord-008426-ktn8c0zx 177 3 al al NNP cord-008426-ktn8c0zx 177 4 . . NNP cord-008426-ktn8c0zx 177 5 , , , cord-008426-ktn8c0zx 177 6 1967 1967 CD cord-008426-ktn8c0zx 177 7 ) ) -RRB- cord-008426-ktn8c0zx 177 8 . . . cord-008426-ktn8c0zx 178 1 Detailed detailed JJ cord-008426-ktn8c0zx 178 2 structural structural JJ cord-008426-ktn8c0zx 178 3 information information NN cord-008426-ktn8c0zx 178 4 based base VBN cord-008426-ktn8c0zx 178 5 on on IN cord-008426-ktn8c0zx 178 6 crystallographic crystallographic JJ cord-008426-ktn8c0zx 178 7 studies study NNS cord-008426-ktn8c0zx 178 8 at at IN cord-008426-ktn8c0zx 178 9 resolutions resolution NNS cord-008426-ktn8c0zx 178 10 of of IN cord-008426-ktn8c0zx 178 11 up up IN cord-008426-ktn8c0zx 178 12 to to TO cord-008426-ktn8c0zx 178 13 2.9 2.9 CD cord-008426-ktn8c0zx 178 14 A a DT cord-008426-ktn8c0zx 178 15 is be VBZ cord-008426-ktn8c0zx 178 16 available available JJ cord-008426-ktn8c0zx 178 17 for for IN cord-008426-ktn8c0zx 178 18 the the DT cord-008426-ktn8c0zx 178 19 coat coat NN cord-008426-ktn8c0zx 178 20 protein protein NN cord-008426-ktn8c0zx 178 21 subunit subunit NN cord-008426-ktn8c0zx 178 22 of of IN cord-008426-ktn8c0zx 178 23 SBMV SBMV NNP cord-008426-ktn8c0zx 178 24 - - HYPH cord-008426-ktn8c0zx 178 25 C C NNP cord-008426-ktn8c0zx 179 1 ( ( -LRB- cord-008426-ktn8c0zx 179 2 Abad Abad NNP cord-008426-ktn8c0zx 179 3 - - HYPH cord-008426-ktn8c0zx 179 4 Zapatero Zapatero NNP cord-008426-ktn8c0zx 179 5 etaL etaL NNP cord-008426-ktn8c0zx 179 6 , , , cord-008426-ktn8c0zx 179 7 1980 1980 CD cord-008426-ktn8c0zx 179 8 ; ; : cord-008426-ktn8c0zx 179 9 Rossmann Rossmann NNP cord-008426-ktn8c0zx 179 10 , , , cord-008426-ktn8c0zx 179 11 1984 1984 CD cord-008426-ktn8c0zx 179 12 ; ; : cord-008426-ktn8c0zx 179 13 Silva Silva NNP cord-008426-ktn8c0zx 179 14 and and CC cord-008426-ktn8c0zx 179 15 Rossmann Rossmann NNP cord-008426-ktn8c0zx 179 16 , , , cord-008426-ktn8c0zx 179 17 1987 1987 CD cord-008426-ktn8c0zx 179 18 ) ) -RRB- cord-008426-ktn8c0zx 179 19 . . . cord-008426-ktn8c0zx 180 1 The the DT cord-008426-ktn8c0zx 180 2 SBMV SBMV NNP cord-008426-ktn8c0zx 180 3 particle particle NN cord-008426-ktn8c0zx 180 4 consists consist VBZ cord-008426-ktn8c0zx 180 5 of of IN cord-008426-ktn8c0zx 180 6 180 180 CD cord-008426-ktn8c0zx 180 7 coat coat NN cord-008426-ktn8c0zx 180 8 protein protein NN cord-008426-ktn8c0zx 180 9 subunits subunit NNS cord-008426-ktn8c0zx 180 10 arranged arrange VBN cord-008426-ktn8c0zx 180 11 in in IN cord-008426-ktn8c0zx 180 12 an an DT cord-008426-ktn8c0zx 180 13 icosahedral icosahedral JJ cord-008426-ktn8c0zx 180 14 T t NN cord-008426-ktn8c0zx 180 15 = = SYM cord-008426-ktn8c0zx 180 16 3 3 CD cord-008426-ktn8c0zx 180 17 geometry geometry NN cord-008426-ktn8c0zx 180 18 ( ( -LRB- cord-008426-ktn8c0zx 180 19 Johnson Johnson NNP cord-008426-ktn8c0zx 180 20 et et NNP cord-008426-ktn8c0zx 180 21 al al NNP cord-008426-ktn8c0zx 180 22 . . NNP cord-008426-ktn8c0zx 180 23 , , , cord-008426-ktn8c0zx 180 24 1976 1976 CD cord-008426-ktn8c0zx 180 25 ; ; : cord-008426-ktn8c0zx 180 26 Silva Silva NNP cord-008426-ktn8c0zx 180 27 and and CC cord-008426-ktn8c0zx 180 28 Rossman Rossman NNP cord-008426-ktn8c0zx 180 29 , , , cord-008426-ktn8c0zx 180 30 1987 1987 CD cord-008426-ktn8c0zx 180 31 ) ) -RRB- cord-008426-ktn8c0zx 180 32 with with IN cord-008426-ktn8c0zx 180 33 each each DT cord-008426-ktn8c0zx 180 34 protein protein NN cord-008426-ktn8c0zx 180 35 subunit subunit NN cord-008426-ktn8c0zx 180 36 comprising comprise VBG cord-008426-ktn8c0zx 180 37 two two CD cord-008426-ktn8c0zx 180 38 domains domain NNS cord-008426-ktn8c0zx 180 39 , , , cord-008426-ktn8c0zx 180 40 the the DT cord-008426-ktn8c0zx 180 41 R r NN cord-008426-ktn8c0zx 180 42 ( ( -LRB- cord-008426-ktn8c0zx 180 43 Random Random NNP cord-008426-ktn8c0zx 180 44 ) ) -RRB- cord-008426-ktn8c0zx 180 45 and and CC cord-008426-ktn8c0zx 181 1 Asterisks asterisk NNS cord-008426-ktn8c0zx 181 2 indicate indicate VBP cord-008426-ktn8c0zx 181 3 direct direct JJ cord-008426-ktn8c0zx 181 4 similarity similarity NN cord-008426-ktn8c0zx 181 5 and and CC cord-008426-ktn8c0zx 181 6 periods period NNS cord-008426-ktn8c0zx 181 7 familial familial JJ cord-008426-ktn8c0zx 181 8 similarity similarity NN cord-008426-ktn8c0zx 181 9 . . . cord-008426-ktn8c0zx 182 1 The the DT cord-008426-ktn8c0zx 182 2 tertiary tertiary JJ cord-008426-ktn8c0zx 182 3 structure structure NN cord-008426-ktn8c0zx 182 4 features feature VBZ cord-008426-ktn8c0zx 182 5 as as IN cord-008426-ktn8c0zx 182 6 determined determine VBN cord-008426-ktn8c0zx 182 7 for for IN cord-008426-ktn8c0zx 183 1 SBMV SBMV NNP cord-008426-ktn8c0zx 183 2 - - HYPH cord-008426-ktn8c0zx 183 3 CP cp NN cord-008426-ktn8c0zx 183 4 coat coat NN cord-008426-ktn8c0zx 183 5 protein protein NN cord-008426-ktn8c0zx 183 6 ( ( -LRB- cord-008426-ktn8c0zx 183 7 see see VB cord-008426-ktn8c0zx 183 8 Rossmann Rossmann NNP cord-008426-ktn8c0zx 183 9 , , , cord-008426-ktn8c0zx 183 10 1984 1984 CD cord-008426-ktn8c0zx 183 11 ) ) -RRB- cord-008426-ktn8c0zx 183 12 are be VBP cord-008426-ktn8c0zx 183 13 shown show VBN cord-008426-ktn8c0zx 183 14 as as IN cord-008426-ktn8c0zx 183 15 are be VBP cord-008426-ktn8c0zx 183 16 the the DT cord-008426-ktn8c0zx 183 17 amino amino NN cord-008426-ktn8c0zx 183 18 acids acid NNS cord-008426-ktn8c0zx 183 19 implicated implicate VBN cord-008426-ktn8c0zx 183 20 in in IN cord-008426-ktn8c0zx 183 21 calcium calcium NN cord-008426-ktn8c0zx 183 22 binding binding NN cord-008426-ktn8c0zx 183 23 ( ( -LRB- cord-008426-ktn8c0zx 183 24 Ca Ca NNP cord-008426-ktn8c0zx 183 25 ) ) -RRB- cord-008426-ktn8c0zx 183 26 . . . cord-008426-ktn8c0zx 184 1 The the DT cord-008426-ktn8c0zx 184 2 highlighted highlight VBN cord-008426-ktn8c0zx 184 3 residues residue NNS cord-008426-ktn8c0zx 184 4 in in IN cord-008426-ktn8c0zx 184 5 the the DT cord-008426-ktn8c0zx 184 6 SBMV SBMV NNP cord-008426-ktn8c0zx 184 7 - - HYPH cord-008426-ktn8c0zx 184 8 CP CP NNP cord-008426-ktn8c0zx 184 9 and and CC cord-008426-ktn8c0zx 184 10 RYMV RYMV NNP cord-008426-ktn8c0zx 184 11 sequences sequence NNS cord-008426-ktn8c0zx 184 12 are be VBP cord-008426-ktn8c0zx 184 13 those those DT cord-008426-ktn8c0zx 184 14 suggested suggest VBN cord-008426-ktn8c0zx 184 15 to to TO cord-008426-ktn8c0zx 184 16 be be VB cord-008426-ktn8c0zx 184 17 similar similar JJ cord-008426-ktn8c0zx 184 18 to to IN cord-008426-ktn8c0zx 184 19 the the DT cord-008426-ktn8c0zx 184 20 bipartite bipartite JJ cord-008426-ktn8c0zx 184 21 nuclear nuclear JJ cord-008426-ktn8c0zx 184 22 targeting targeting NN cord-008426-ktn8c0zx 184 23 motif motif NN cord-008426-ktn8c0zx 184 24 ( ( -LRB- cord-008426-ktn8c0zx 184 25 Dingwall Dingwall NNP cord-008426-ktn8c0zx 184 26 and and CC cord-008426-ktn8c0zx 184 27 Laskey Laskey NNP cord-008426-ktn8c0zx 184 28 , , , cord-008426-ktn8c0zx 184 29 1991 1991 CD cord-008426-ktn8c0zx 184 30 ) ) -RRB- cord-008426-ktn8c0zx 184 31 . . . cord-008426-ktn8c0zx 185 1 the the DT cord-008426-ktn8c0zx 185 2 S S NNP cord-008426-ktn8c0zx 185 3 ( ( -LRB- cord-008426-ktn8c0zx 185 4 Shell Shell NNP cord-008426-ktn8c0zx 185 5 or or CC cord-008426-ktn8c0zx 185 6 surface surface NN cord-008426-ktn8c0zx 185 7 ) ) -RRB- cord-008426-ktn8c0zx 185 8 domain domain NN cord-008426-ktn8c0zx 185 9 connected connect VBN cord-008426-ktn8c0zx 185 10 by by IN cord-008426-ktn8c0zx 185 11 an an DT cord-008426-ktn8c0zx 185 12 " " `` cord-008426-ktn8c0zx 185 13 arm arm NN cord-008426-ktn8c0zx 185 14 . . . cord-008426-ktn8c0zx 185 15 " " '' cord-008426-ktn8c0zx 186 1 The the DT cord-008426-ktn8c0zx 186 2 R r NN cord-008426-ktn8c0zx 186 3 domain domain NN cord-008426-ktn8c0zx 186 4 , , , cord-008426-ktn8c0zx 186 5 made make VBN cord-008426-ktn8c0zx 186 6 up up RP cord-008426-ktn8c0zx 186 7 of of IN cord-008426-ktn8c0zx 186 8 the the DT cord-008426-ktn8c0zx 186 9 N n CD cord-008426-ktn8c0zx 186 10 - - HYPH cord-008426-ktn8c0zx 186 11 terminal terminal JJ cord-008426-ktn8c0zx 186 12 portion portion NN cord-008426-ktn8c0zx 186 13 of of IN cord-008426-ktn8c0zx 186 14 the the DT cord-008426-ktn8c0zx 186 15 polypeptide polypeptide NN cord-008426-ktn8c0zx 186 16 chain chain NN cord-008426-ktn8c0zx 186 17 , , , cord-008426-ktn8c0zx 186 18 is be VBZ cord-008426-ktn8c0zx 186 19 rich rich JJ cord-008426-ktn8c0zx 186 20 in in IN cord-008426-ktn8c0zx 186 21 arginine arginine NN cord-008426-ktn8c0zx 186 22 , , , cord-008426-ktn8c0zx 186 23 lysine lysine NN cord-008426-ktn8c0zx 186 24 , , , cord-008426-ktn8c0zx 186 25 proline proline NN cord-008426-ktn8c0zx 186 26 , , , cord-008426-ktn8c0zx 186 27 and and CC cord-008426-ktn8c0zx 186 28 glutamine glutamine NN cord-008426-ktn8c0zx 186 29 and and CC cord-008426-ktn8c0zx 186 30 penetrates penetrate VBZ cord-008426-ktn8c0zx 186 31 into into IN cord-008426-ktn8c0zx 186 32 the the DT cord-008426-ktn8c0zx 186 33 interior interior NN cord-008426-ktn8c0zx 186 34 of of IN cord-008426-ktn8c0zx 186 35 the the DT cord-008426-ktn8c0zx 186 36 particle particle NN cord-008426-ktn8c0zx 186 37 where where WRB cord-008426-ktn8c0zx 186 38 it -PRON- PRP cord-008426-ktn8c0zx 186 39 interacts interact VBZ cord-008426-ktn8c0zx 186 40 with with IN cord-008426-ktn8c0zx 186 41 the the DT cord-008426-ktn8c0zx 186 42 RNA RNA NNP cord-008426-ktn8c0zx 186 43 ( ( -LRB- cord-008426-ktn8c0zx 186 44 Abad Abad NNP cord-008426-ktn8c0zx 186 45 - - HYPH cord-008426-ktn8c0zx 186 46 Zapatero Zapatero NNP cord-008426-ktn8c0zx 186 47 et et NNP cord-008426-ktn8c0zx 186 48 aL aL NNP cord-008426-ktn8c0zx 186 49 , , , cord-008426-ktn8c0zx 186 50 1980 1980 CD cord-008426-ktn8c0zx 186 51 ; ; : cord-008426-ktn8c0zx 186 52 Tremaine Tremaine NNP cord-008426-ktn8c0zx 186 53 eta/. eta/. CD cord-008426-ktn8c0zx 186 54 , , , cord-008426-ktn8c0zx 186 55 1981 1981 CD cord-008426-ktn8c0zx 187 1 Tremaine Tremaine NNP cord-008426-ktn8c0zx 187 2 eta/. eta/. CD cord-008426-ktn8c0zx 187 3 , , , cord-008426-ktn8c0zx 187 4 , , , cord-008426-ktn8c0zx 187 5 1982 1982 CD cord-008426-ktn8c0zx 188 1 Hermodson Hermodson NNP cord-008426-ktn8c0zx 188 2 eta/. eta/. NN cord-008426-ktn8c0zx 188 3 , , , cord-008426-ktn8c0zx 188 4 1982 1982 CD cord-008426-ktn8c0zx 188 5 ; ; : cord-008426-ktn8c0zx 188 6 Kruse Kruse NNP cord-008426-ktn8c0zx 188 7 eta/. eta/. CD cord-008426-ktn8c0zx 188 8 , , , cord-008426-ktn8c0zx 188 9 1982 1982 CD cord-008426-ktn8c0zx 188 10 ) ) -RRB- cord-008426-ktn8c0zx 188 11 . . . cord-008426-ktn8c0zx 189 1 The the DT cord-008426-ktn8c0zx 189 2 S S NNP cord-008426-ktn8c0zx 189 3 domain domain NN cord-008426-ktn8c0zx 189 4 consists consist VBZ cord-008426-ktn8c0zx 189 5 of of IN cord-008426-ktn8c0zx 189 6 a a DT cord-008426-ktn8c0zx 189 7 core core NN cord-008426-ktn8c0zx 189 8 made make VBN cord-008426-ktn8c0zx 189 9 up up RP cord-008426-ktn8c0zx 189 10 of of IN cord-008426-ktn8c0zx 189 11 a a DT cord-008426-ktn8c0zx 189 12 bundle bundle NN cord-008426-ktn8c0zx 189 13 of of IN cord-008426-ktn8c0zx 189 14 eight eight CD cord-008426-ktn8c0zx 189 15 stranded stranded JJ cord-008426-ktn8c0zx 189 16 anti anti JJ cord-008426-ktn8c0zx 189 17 - - JJ cord-008426-ktn8c0zx 189 18 parallel parallel JJ cord-008426-ktn8c0zx 189 19 /3 /3 NNP cord-008426-ktn8c0zx 189 20 sheets sheet NNS cord-008426-ktn8c0zx 189 21 ( ( -LRB- cord-008426-ktn8c0zx 189 22 /~ /~ NNP cord-008426-ktn8c0zx 189 23 barrel barrel NN cord-008426-ktn8c0zx 189 24 ) ) -RRB- cord-008426-ktn8c0zx 189 25 together together RB cord-008426-ktn8c0zx 189 26 with with IN cord-008426-ktn8c0zx 189 27 five five CD cord-008426-ktn8c0zx 189 28 ~ ~ NFP cord-008426-ktn8c0zx 189 29 helical helical JJ cord-008426-ktn8c0zx 189 30 regions region NNS cord-008426-ktn8c0zx 189 31 . . . cord-008426-ktn8c0zx 190 1 The the DT cord-008426-ktn8c0zx 190 2 interactions interaction NNS cord-008426-ktn8c0zx 190 3 between between IN cord-008426-ktn8c0zx 190 4 the the DT cord-008426-ktn8c0zx 190 5 protein protein NN cord-008426-ktn8c0zx 190 6 subunits subunit NNS cord-008426-ktn8c0zx 190 7 and and CC cord-008426-ktn8c0zx 190 8 the the DT cord-008426-ktn8c0zx 190 9 RNA RNA NNP cord-008426-ktn8c0zx 190 10 also also RB cord-008426-ktn8c0zx 190 11 involve involve VBP cord-008426-ktn8c0zx 190 12 the the DT cord-008426-ktn8c0zx 190 13 basic basic JJ cord-008426-ktn8c0zx 190 14 amino amino NN cord-008426-ktn8c0zx 190 15 acids acid NNS cord-008426-ktn8c0zx 190 16 on on IN cord-008426-ktn8c0zx 190 17 the the DT cord-008426-ktn8c0zx 190 18 inner inner JJ cord-008426-ktn8c0zx 190 19 surface surface NN cord-008426-ktn8c0zx 190 20 of of IN cord-008426-ktn8c0zx 190 21 the the DT cord-008426-ktn8c0zx 190 22 S S NNP cord-008426-ktn8c0zx 190 23 domain domain NN cord-008426-ktn8c0zx 190 24 ( ( -LRB- cord-008426-ktn8c0zx 190 25 Hermodson Hermodson NNP cord-008426-ktn8c0zx 190 26 eta/. eta/. CD cord-008426-ktn8c0zx 190 27 , , , cord-008426-ktn8c0zx 190 28 1982 1982 CD cord-008426-ktn8c0zx 190 29 ) ) -RRB- cord-008426-ktn8c0zx 190 30 . . . cord-008426-ktn8c0zx 191 1 Comparison comparison NN cord-008426-ktn8c0zx 191 2 of of IN cord-008426-ktn8c0zx 191 3 the the DT cord-008426-ktn8c0zx 191 4 amino amino NN cord-008426-ktn8c0zx 191 5 acid acid NN cord-008426-ktn8c0zx 191 6 sequences sequence NNS cord-008426-ktn8c0zx 191 7 predicted predict VBD cord-008426-ktn8c0zx 191 8 from from IN cord-008426-ktn8c0zx 191 9 SBMV SBMV NNP cord-008426-ktn8c0zx 191 10 - - HYPH cord-008426-ktn8c0zx 191 11 B B NNP cord-008426-ktn8c0zx 191 12 ORF ORF NNP cord-008426-ktn8c0zx 191 13 3 3 CD cord-008426-ktn8c0zx 191 14 and and CC cord-008426-ktn8c0zx 191 15 the the DT cord-008426-ktn8c0zx 191 16 corresponding corresponding JJ cord-008426-ktn8c0zx 191 17 ORF ORF NNP cord-008426-ktn8c0zx 191 18 4 4 CD cord-008426-ktn8c0zx 191 19 of of IN cord-008426-ktn8c0zx 191 20 the the DT cord-008426-ktn8c0zx 191 21 other other JJ cord-008426-ktn8c0zx 191 22 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 191 23 ( ( -LRB- cord-008426-ktn8c0zx 191 24 Table table NN cord-008426-ktn8c0zx 191 25 1 1 CD cord-008426-ktn8c0zx 191 26 ) ) -RRB- cord-008426-ktn8c0zx 191 27 shows show VBZ cord-008426-ktn8c0zx 191 28 that that IN cord-008426-ktn8c0zx 191 29 it -PRON- PRP cord-008426-ktn8c0zx 191 30 is be VBZ cord-008426-ktn8c0zx 191 31 more more RBR cord-008426-ktn8c0zx 191 32 ctosely ctosely RB cord-008426-ktn8c0zx 191 33 related relate VBN cord-008426-ktn8c0zx 191 34 to to IN cord-008426-ktn8c0zx 191 35 SBMV SBMV NNP cord-008426-ktn8c0zx 191 36 - - HYPH cord-008426-ktn8c0zx 191 37 C C NNP cord-008426-ktn8c0zx 191 38 than than IN cord-008426-ktn8c0zx 191 39 to to IN cord-008426-ktn8c0zx 191 40 RYMV RYMV NNP cord-008426-ktn8c0zx 191 41 . . . cord-008426-ktn8c0zx 192 1 When when WRB cord-008426-ktn8c0zx 192 2 the the DT cord-008426-ktn8c0zx 192 3 amino amino NN cord-008426-ktn8c0zx 192 4 acid acid NN cord-008426-ktn8c0zx 192 5 sequence sequence NN cord-008426-ktn8c0zx 192 6 of of IN cord-008426-ktn8c0zx 192 7 SBMV SBMV NNP cord-008426-ktn8c0zx 192 8 - - HYPH cord-008426-ktn8c0zx 192 9 B B NNP cord-008426-ktn8c0zx 192 10 ORF ORF NNP cord-008426-ktn8c0zx 192 11 3 3 CD cord-008426-ktn8c0zx 192 12 is be VBZ cord-008426-ktn8c0zx 192 13 compared compare VBN cord-008426-ktn8c0zx 192 14 as as RB cord-008426-ktn8c0zx 192 15 far far RB cord-008426-ktn8c0zx 192 16 as as IN cord-008426-ktn8c0zx 192 17 tertiary tertiary JJ cord-008426-ktn8c0zx 192 18 structure structure NN cord-008426-ktn8c0zx 192 19 considerations consideration NNS cord-008426-ktn8c0zx 192 20 are be VBP cord-008426-ktn8c0zx 192 21 concerned concern VBN cord-008426-ktn8c0zx 192 22 with with IN cord-008426-ktn8c0zx 192 23 that that DT cord-008426-ktn8c0zx 192 24 of of IN cord-008426-ktn8c0zx 192 25 SBMV SBMV NNP cord-008426-ktn8c0zx 192 26 - - HYPH cord-008426-ktn8c0zx 192 27 C C NNP cord-008426-ktn8c0zx 192 28 coat coat NN cord-008426-ktn8c0zx 192 29 protein protein NN cord-008426-ktn8c0zx 192 30 there there EX cord-008426-ktn8c0zx 192 31 are be VBP cord-008426-ktn8c0zx 192 32 many many JJ cord-008426-ktn8c0zx 192 33 similarities similarity NNS cord-008426-ktn8c0zx 192 34 but but CC cord-008426-ktn8c0zx 192 35 also also RB cord-008426-ktn8c0zx 192 36 some some DT cord-008426-ktn8c0zx 192 37 differences difference NNS cord-008426-ktn8c0zx 192 38 in in IN cord-008426-ktn8c0zx 192 39 potentially potentially RB cord-008426-ktn8c0zx 192 40 structurally structurally RB cord-008426-ktn8c0zx 192 41 important important JJ cord-008426-ktn8c0zx 192 42 residues residue NNS cord-008426-ktn8c0zx 192 43 that that WDT cord-008426-ktn8c0zx 192 44 maintain maintain VBP cord-008426-ktn8c0zx 192 45 the the DT cord-008426-ktn8c0zx 192 46 integrity integrity NN cord-008426-ktn8c0zx 192 47 of of IN cord-008426-ktn8c0zx 192 48 the the DT cord-008426-ktn8c0zx 192 49 capsid capsid NN cord-008426-ktn8c0zx 192 50 . . . cord-008426-ktn8c0zx 193 1 Tremaine Tremaine NNP cord-008426-ktn8c0zx 193 2 eta/. eta/. CD cord-008426-ktn8c0zx 193 3 ( ( -LRB- cord-008426-ktn8c0zx 193 4 1981 1981 CD cord-008426-ktn8c0zx 193 5 ) ) -RRB- cord-008426-ktn8c0zx 193 6 showed show VBD cord-008426-ktn8c0zx 193 7 that that IN cord-008426-ktn8c0zx 193 8 the the DT cord-008426-ktn8c0zx 193 9 NH2-terminal NH2-terminal NNP cord-008426-ktn8c0zx 193 10 polypeptide polypeptide NN cord-008426-ktn8c0zx 193 11 binds bind VBZ cord-008426-ktn8c0zx 193 12 RNA RNA NNP cord-008426-ktn8c0zx 193 13 , , , cord-008426-ktn8c0zx 193 14 DNA DNA NNP cord-008426-ktn8c0zx 193 15 , , , cord-008426-ktn8c0zx 193 16 and and CC cord-008426-ktn8c0zx 193 17 sodium sodium NN cord-008426-ktn8c0zx 193 18 dextran dextran NN cord-008426-ktn8c0zx 193 19 sulfate sulfate NN cord-008426-ktn8c0zx 193 20 . . . cord-008426-ktn8c0zx 194 1 Comparison comparison NN cord-008426-ktn8c0zx 194 2 of of IN cord-008426-ktn8c0zx 194 3 the the DT cord-008426-ktn8c0zx 194 4 66 66 CD cord-008426-ktn8c0zx 194 5 residues residue NNS cord-008426-ktn8c0zx 194 6 which which WDT cord-008426-ktn8c0zx 194 7 compose compose VBP cord-008426-ktn8c0zx 194 8 the the DT cord-008426-ktn8c0zx 194 9 NH2-terminal nh2-terminal JJ cord-008426-ktn8c0zx 194 10 arm arm NN cord-008426-ktn8c0zx 194 11 of of IN cord-008426-ktn8c0zx 194 12 the the DT cord-008426-ktn8c0zx 194 13 two two CD cord-008426-ktn8c0zx 194 14 strains strain NNS cord-008426-ktn8c0zx 194 15 of of IN cord-008426-ktn8c0zx 194 16 SBMV SBMV NNP cord-008426-ktn8c0zx 194 17 upstream upstream RB cord-008426-ktn8c0zx 194 18 of of IN cord-008426-ktn8c0zx 194 19 the the DT cord-008426-ktn8c0zx 194 20 first/3-barrel first/3-barrel CD cord-008426-ktn8c0zx 195 1 ( ( -LRB- cord-008426-ktn8c0zx 195 2 Fig Fig NNP cord-008426-ktn8c0zx 195 3 . . NNP cord-008426-ktn8c0zx 195 4 5 5 CD cord-008426-ktn8c0zx 195 5 ) ) -RRB- cord-008426-ktn8c0zx 195 6 shows show VBZ cord-008426-ktn8c0zx 195 7 that that IN cord-008426-ktn8c0zx 195 8 , , , cord-008426-ktn8c0zx 195 9 while while IN cord-008426-ktn8c0zx 195 10 there there EX cord-008426-ktn8c0zx 195 11 are be VBP cord-008426-ktn8c0zx 195 12 differences difference NNS cord-008426-ktn8c0zx 195 13 between between IN cord-008426-ktn8c0zx 195 14 the the DT cord-008426-ktn8c0zx 195 15 two two CD cord-008426-ktn8c0zx 195 16 sequences sequence NNS cord-008426-ktn8c0zx 195 17 ( ( -LRB- cord-008426-ktn8c0zx 195 18 89.4 89.4 CD cord-008426-ktn8c0zx 195 19 % % NN cord-008426-ktn8c0zx 195 20 identity identity NN cord-008426-ktn8c0zx 195 21 ) ) -RRB- cord-008426-ktn8c0zx 195 22 , , , cord-008426-ktn8c0zx 195 23 the the DT cord-008426-ktn8c0zx 195 24 residues residue NNS cord-008426-ktn8c0zx 195 25 in in IN cord-008426-ktn8c0zx 195 26 this this DT cord-008426-ktn8c0zx 195 27 region region NN cord-008426-ktn8c0zx 195 28 remain remain VBP cord-008426-ktn8c0zx 195 29 primarily primarily RB cord-008426-ktn8c0zx 195 30 basic basic JJ cord-008426-ktn8c0zx 195 31 , , , cord-008426-ktn8c0zx 195 32 a a DT cord-008426-ktn8c0zx 195 33 factor factor NN cord-008426-ktn8c0zx 195 34 thought think VBN cord-008426-ktn8c0zx 195 35 to to TO cord-008426-ktn8c0zx 195 36 be be VB cord-008426-ktn8c0zx 195 37 important important JJ cord-008426-ktn8c0zx 195 38 in in IN cord-008426-ktn8c0zx 195 39 the the DT cord-008426-ktn8c0zx 195 40 interaction interaction NN cord-008426-ktn8c0zx 195 41 between between IN cord-008426-ktn8c0zx 195 42 protein protein NN cord-008426-ktn8c0zx 195 43 and and CC cord-008426-ktn8c0zx 195 44 RNA RNA NNP cord-008426-ktn8c0zx 195 45 . . . cord-008426-ktn8c0zx 196 1 Significantly significantly RB cord-008426-ktn8c0zx 196 2 , , , cord-008426-ktn8c0zx 196 3 the the DT cord-008426-ktn8c0zx 196 4 trypsin trypsin NN cord-008426-ktn8c0zx 196 5 cleavage cleavage NN cord-008426-ktn8c0zx 196 6 site site NN cord-008426-ktn8c0zx 196 7 at at IN cord-008426-ktn8c0zx 196 8 Arg arg NN cord-008426-ktn8c0zx 196 9 61 61 CD cord-008426-ktn8c0zx 197 1 ( ( -LRB- cord-008426-ktn8c0zx 197 2 Erickson Erickson NNP cord-008426-ktn8c0zx 197 3 and and CC cord-008426-ktn8c0zx 197 4 Rossmann Rossmann NNP cord-008426-ktn8c0zx 197 5 , , , cord-008426-ktn8c0zx 197 6 1982 1982 CD cord-008426-ktn8c0zx 197 7 ) ) -RRB- cord-008426-ktn8c0zx 197 8 is be VBZ cord-008426-ktn8c0zx 197 9 also also RB cord-008426-ktn8c0zx 197 10 conserved conserve VBN cord-008426-ktn8c0zx 197 11 . . . cord-008426-ktn8c0zx 198 1 Rossmann Rossmann NNP cord-008426-ktn8c0zx 198 2 ( ( -LRB- cord-008426-ktn8c0zx 198 3 1984 1984 CD cord-008426-ktn8c0zx 198 4 ) ) -RRB- cord-008426-ktn8c0zx 198 5 proposed propose VBD cord-008426-ktn8c0zx 198 6 several several JJ cord-008426-ktn8c0zx 198 7 possible possible JJ cord-008426-ktn8c0zx 198 8 docking docking NN cord-008426-ktn8c0zx 198 9 sites site NNS cord-008426-ktn8c0zx 198 10 for for IN cord-008426-ktn8c0zx 198 11 specific specific JJ cord-008426-ktn8c0zx 198 12 RNA RNA NNP cord-008426-ktn8c0zx 198 13 - - HYPH cord-008426-ktn8c0zx 198 14 protein protein NN cord-008426-ktn8c0zx 198 15 interaction interaction NN cord-008426-ktn8c0zx 198 16 in in IN cord-008426-ktn8c0zx 198 17 SBMV SBMV NNP cord-008426-ktn8c0zx 198 18 - - HYPH cord-008426-ktn8c0zx 198 19 C C NNP cord-008426-ktn8c0zx 198 20 , , , cord-008426-ktn8c0zx 198 21 including include VBG cord-008426-ktn8c0zx 198 22 a a DT cord-008426-ktn8c0zx 198 23 polar polar JJ cord-008426-ktn8c0zx 198 24 polypeptide polypeptide NN cord-008426-ktn8c0zx 198 25 ( ( -LRB- cord-008426-ktn8c0zx 198 26 188 188 CD cord-008426-ktn8c0zx 198 27 to to TO cord-008426-ktn8c0zx 198 28 196 196 CD cord-008426-ktn8c0zx 198 29 ) ) -RRB- cord-008426-ktn8c0zx 198 30 which which WDT cord-008426-ktn8c0zx 198 31 forms form VBZ cord-008426-ktn8c0zx 198 32 a a DT cord-008426-ktn8c0zx 198 33 large large JJ cord-008426-ktn8c0zx 198 34 bulge bulge NN cord-008426-ktn8c0zx 198 35 in in IN cord-008426-ktn8c0zx 198 36 strand/~G strand/~G NNP cord-008426-ktn8c0zx 198 37 and and CC cord-008426-ktn8c0zx 198 38 protrudes protrude VBZ cord-008426-ktn8c0zx 198 39 into into IN cord-008426-ktn8c0zx 198 40 the the DT cord-008426-ktn8c0zx 198 41 RNA RNA NNP cord-008426-ktn8c0zx 198 42 . . . cord-008426-ktn8c0zx 199 1 Interestingly interestingly RB cord-008426-ktn8c0zx 199 2 there there EX cord-008426-ktn8c0zx 199 3 is be VBZ cord-008426-ktn8c0zx 199 4 little little JJ cord-008426-ktn8c0zx 199 5 conservation conservation NN cord-008426-ktn8c0zx 199 6 between between IN cord-008426-ktn8c0zx 199 7 SBMV SBMV NNP cord-008426-ktn8c0zx 199 8 - - HYPH cord-008426-ktn8c0zx 199 9 B B NNP cord-008426-ktn8c0zx 199 10 and and CC cord-008426-ktn8c0zx 199 11 SBMV SBMV NNP cord-008426-ktn8c0zx 199 12 - - HYPH cord-008426-ktn8c0zx 199 13 C C NNP cord-008426-ktn8c0zx 199 14 in in IN cord-008426-ktn8c0zx 199 15 this this DT cord-008426-ktn8c0zx 199 16 region region NN cord-008426-ktn8c0zx 199 17 , , , cord-008426-ktn8c0zx 199 18 which which WDT cord-008426-ktn8c0zx 199 19 may may MD cord-008426-ktn8c0zx 199 20 suggest suggest VB cord-008426-ktn8c0zx 199 21 subtle subtle JJ cord-008426-ktn8c0zx 199 22 differences difference NNS cord-008426-ktn8c0zx 199 23 in in IN cord-008426-ktn8c0zx 199 24 the the DT cord-008426-ktn8c0zx 199 25 strategies strategy NNS cord-008426-ktn8c0zx 199 26 of of IN cord-008426-ktn8c0zx 199 27 their -PRON- PRP$ cord-008426-ktn8c0zx 199 28 protein protein NN cord-008426-ktn8c0zx 199 29 - - HYPH cord-008426-ktn8c0zx 199 30 RNA RNA NNP cord-008426-ktn8c0zx 199 31 interactions interaction NNS cord-008426-ktn8c0zx 199 32 . . . cord-008426-ktn8c0zx 200 1 Factors factor NNS cord-008426-ktn8c0zx 200 2 affecting affect VBG cord-008426-ktn8c0zx 200 3 stabilization stabilization NN cord-008426-ktn8c0zx 200 4 of of IN cord-008426-ktn8c0zx 200 5 the the DT cord-008426-ktn8c0zx 200 6 capsid capsid NN cord-008426-ktn8c0zx 200 7 of of IN cord-008426-ktn8c0zx 200 8 SBMV SBMV NNP cord-008426-ktn8c0zx 200 9 represent represent VBP cord-008426-ktn8c0zx 200 10 a a DT cord-008426-ktn8c0zx 200 11 common common JJ cord-008426-ktn8c0zx 200 12 link link NN cord-008426-ktn8c0zx 200 13 with with IN cord-008426-ktn8c0zx 200 14 other other JJ cord-008426-ktn8c0zx 200 15 members member NNS cord-008426-ktn8c0zx 200 16 of of IN cord-008426-ktn8c0zx 200 17 the the DT cord-008426-ktn8c0zx 200 18 sobemovirus sobemovirus NNP cord-008426-ktn8c0zx 200 19 group group NN cord-008426-ktn8c0zx 200 20 and and CC cord-008426-ktn8c0zx 200 21 have have VBP cord-008426-ktn8c0zx 200 22 been be VBN cord-008426-ktn8c0zx 200 23 extensively extensively RB cord-008426-ktn8c0zx 200 24 studied study VBN cord-008426-ktn8c0zx 200 25 ( ( -LRB- cord-008426-ktn8c0zx 200 26 Hull Hull NNP cord-008426-ktn8c0zx 200 27 , , , cord-008426-ktn8c0zx 200 28 1977 1977 CD cord-008426-ktn8c0zx 200 29 ( ( -LRB- cord-008426-ktn8c0zx 200 30 Hull Hull NNP cord-008426-ktn8c0zx 200 31 , , , cord-008426-ktn8c0zx 200 32 , , , cord-008426-ktn8c0zx 200 33 1978 1978 CD cord-008426-ktn8c0zx 200 34 Sehgal Sehgal NNP cord-008426-ktn8c0zx 200 35 et et NNP cord-008426-ktn8c0zx 200 36 al al NNP cord-008426-ktn8c0zx 200 37 . . NNP cord-008426-ktn8c0zx 200 38 , , , cord-008426-ktn8c0zx 200 39 1979 1979 CD cord-008426-ktn8c0zx 200 40 ; ; : cord-008426-ktn8c0zx 200 41 AbdeI AbdeI NNP cord-008426-ktn8c0zx 200 42 - - HYPH cord-008426-ktn8c0zx 200 43 Meguid Meguid NNP cord-008426-ktn8c0zx 200 44 et et NNP cord-008426-ktn8c0zx 200 45 al al NNP cord-008426-ktn8c0zx 200 46 . . NNP cord-008426-ktn8c0zx 200 47 , , , cord-008426-ktn8c0zx 200 48 1981 1981 CD cord-008426-ktn8c0zx 200 49 ; ; : cord-008426-ktn8c0zx 200 50 Kruse Kruse NNP cord-008426-ktn8c0zx 200 51 et et NNP cord-008426-ktn8c0zx 200 52 aL aL NNP cord-008426-ktn8c0zx 200 53 , , , cord-008426-ktn8c0zx 200 54 1982 1982 CD cord-008426-ktn8c0zx 200 55 ; ; : cord-008426-ktn8c0zx 200 56 Brisco Brisco NNP cord-008426-ktn8c0zx 200 57 eta/. eta/. CD cord-008426-ktn8c0zx 200 58 , , , cord-008426-ktn8c0zx 200 59 1986 1986 CD cord-008426-ktn8c0zx 200 60 ; ; : cord-008426-ktn8c0zx 200 61 Sehgal Sehgal NNP cord-008426-ktn8c0zx 200 62 , , , cord-008426-ktn8c0zx 200 63 1990 1990 CD cord-008426-ktn8c0zx 200 64 ) ) -RRB- cord-008426-ktn8c0zx 200 65 . . . cord-008426-ktn8c0zx 201 1 The the DT cord-008426-ktn8c0zx 201 2 function function NN cord-008426-ktn8c0zx 201 3 of of IN cord-008426-ktn8c0zx 201 4 metal metal NN cord-008426-ktn8c0zx 201 5 ions ion NNS cord-008426-ktn8c0zx 201 6 , , , cord-008426-ktn8c0zx 201 7 in in IN cord-008426-ktn8c0zx 201 8 particular particular JJ cord-008426-ktn8c0zx 201 9 of of IN cord-008426-ktn8c0zx 201 10 calcium calcium NN cord-008426-ktn8c0zx 201 11 and and CC cord-008426-ktn8c0zx 201 12 magnesium magnesium NN cord-008426-ktn8c0zx 201 13 , , , cord-008426-ktn8c0zx 201 14 in in IN cord-008426-ktn8c0zx 201 15 relation relation NN cord-008426-ktn8c0zx 201 16 to to IN cord-008426-ktn8c0zx 201 17 the the DT cord-008426-ktn8c0zx 201 18 assembly assembly NN cord-008426-ktn8c0zx 201 19 and and CC cord-008426-ktn8c0zx 201 20 stabilization stabilization NN cord-008426-ktn8c0zx 201 21 of of IN cord-008426-ktn8c0zx 201 22 SBMV SBMV NNP cord-008426-ktn8c0zx 201 23 protein protein NN cord-008426-ktn8c0zx 201 24 shells shell NNS cord-008426-ktn8c0zx 201 25 has have VBZ cord-008426-ktn8c0zx 201 26 been be VBN cord-008426-ktn8c0zx 201 27 investigated investigate VBN cord-008426-ktn8c0zx 201 28 in in IN cord-008426-ktn8c0zx 201 29 both both CC cord-008426-ktn8c0zx 201 30 the the DT cord-008426-ktn8c0zx 201 31 bean bean NN cord-008426-ktn8c0zx 201 32 and and CC cord-008426-ktn8c0zx 201 33 cowpea cowpea NNP cord-008426-ktn8c0zx 201 34 strains strain NNS cord-008426-ktn8c0zx 201 35 ( ( -LRB- cord-008426-ktn8c0zx 201 36 Hsu Hsu NNP cord-008426-ktn8c0zx 201 37 et et NNP cord-008426-ktn8c0zx 201 38 al al NNP cord-008426-ktn8c0zx 201 39 . . NNP cord-008426-ktn8c0zx 201 40 , , , cord-008426-ktn8c0zx 201 41 1976 1976 CD cord-008426-ktn8c0zx 201 42 ; ; : cord-008426-ktn8c0zx 201 43 Hull Hull NNP cord-008426-ktn8c0zx 201 44 , , , cord-008426-ktn8c0zx 201 45 1977 1977 CD cord-008426-ktn8c0zx 201 46 ) ) -RRB- cord-008426-ktn8c0zx 201 47 . . . cord-008426-ktn8c0zx 202 1 The the DT cord-008426-ktn8c0zx 202 2 major major JJ cord-008426-ktn8c0zx 202 3 calcium calcium NN cord-008426-ktn8c0zx 202 4 - - HYPH cord-008426-ktn8c0zx 202 5 binding bind VBG cord-008426-ktn8c0zx 202 6 site site NN cord-008426-ktn8c0zx 202 7 that that WDT cord-008426-ktn8c0zx 202 8 lies lie VBZ cord-008426-ktn8c0zx 202 9 in in IN cord-008426-ktn8c0zx 202 10 the the DT cord-008426-ktn8c0zx 202 11 quasi quasi JJ cord-008426-ktn8c0zx 202 12 - - JJ cord-008426-ktn8c0zx 202 13 threefold threefold JJ cord-008426-ktn8c0zx 202 14 axis axis NN cord-008426-ktn8c0zx 202 15 between between IN cord-008426-ktn8c0zx 202 16 the the DT cord-008426-ktn8c0zx 202 17 three three CD cord-008426-ktn8c0zx 202 18 subunits subunit NNS cord-008426-ktn8c0zx 202 19 ( ( -LRB- cord-008426-ktn8c0zx 202 20 A A NNP cord-008426-ktn8c0zx 202 21 , , , cord-008426-ktn8c0zx 202 22 B b NN cord-008426-ktn8c0zx 202 23 , , , cord-008426-ktn8c0zx 202 24 C C NNP cord-008426-ktn8c0zx 202 25 ) ) -RRB- cord-008426-ktn8c0zx 202 26 of of IN cord-008426-ktn8c0zx 202 27 the the DT cord-008426-ktn8c0zx 202 28 SBMV SBMV NNP cord-008426-ktn8c0zx 202 29 - - HYPH cord-008426-ktn8c0zx 202 30 C C NNP cord-008426-ktn8c0zx 202 31 capdd capdd NNS cord-008426-ktn8c0zx 202 32 has have VBZ cord-008426-ktn8c0zx 202 33 been be VBN cord-008426-ktn8c0zx 202 34 identified identify VBN cord-008426-ktn8c0zx 202 35 at at IN cord-008426-ktn8c0zx 202 36 Glu Glu NNP cord-008426-ktn8c0zx 202 37 194 194 CD cord-008426-ktn8c0zx 202 38 ( ( -LRB- cord-008426-ktn8c0zx 202 39 see see VB cord-008426-ktn8c0zx 202 40 Rossmann Rossmann NNP cord-008426-ktn8c0zx 202 41 , , , cord-008426-ktn8c0zx 202 42 1984 1984 CD cord-008426-ktn8c0zx 202 43 ) ) -RRB- cord-008426-ktn8c0zx 203 1 ( ( -LRB- cord-008426-ktn8c0zx 203 2 Fig Fig NNP cord-008426-ktn8c0zx 203 3 . . NNP cord-008426-ktn8c0zx 203 4 5 5 CD cord-008426-ktn8c0zx 203 5 ) ) -RRB- cord-008426-ktn8c0zx 203 6 . . . cord-008426-ktn8c0zx 204 1 The the DT cord-008426-ktn8c0zx 204 2 amino amino NN cord-008426-ktn8c0zx 204 3 acid acid NN cord-008426-ktn8c0zx 204 4 sequence sequence NN cord-008426-ktn8c0zx 204 5 of of IN cord-008426-ktn8c0zx 204 6 SBMV SBMV NNP cord-008426-ktn8c0zx 204 7 - - HYPH cord-008426-ktn8c0zx 204 8 B B NNP cord-008426-ktn8c0zx 204 9 shows show VBZ cord-008426-ktn8c0zx 204 10 the the DT cord-008426-ktn8c0zx 204 11 substitution substitution NN cord-008426-ktn8c0zx 204 12 of of IN cord-008426-ktn8c0zx 204 13 a a DT cord-008426-ktn8c0zx 204 14 lysine lysine NN cord-008426-ktn8c0zx 204 15 residue residue NN cord-008426-ktn8c0zx 204 16 at at IN cord-008426-ktn8c0zx 204 17 the the DT cord-008426-ktn8c0zx 204 18 equivalent equivalent JJ cord-008426-ktn8c0zx 204 19 site site NN cord-008426-ktn8c0zx 204 20 which which WDT cord-008426-ktn8c0zx 204 21 could could MD cord-008426-ktn8c0zx 204 22 indicate indicate VB cord-008426-ktn8c0zx 204 23 an an DT cord-008426-ktn8c0zx 204 24 alternative alternative JJ cord-008426-ktn8c0zx 204 25 mode mode NN cord-008426-ktn8c0zx 204 26 for for IN cord-008426-ktn8c0zx 204 27 subunit subunit NN cord-008426-ktn8c0zx 204 28 interaction interaction NN cord-008426-ktn8c0zx 204 29 . . . cord-008426-ktn8c0zx 205 1 It -PRON- PRP cord-008426-ktn8c0zx 205 2 is be VBZ cord-008426-ktn8c0zx 205 3 also also RB cord-008426-ktn8c0zx 205 4 interesting interesting JJ cord-008426-ktn8c0zx 205 5 to to TO cord-008426-ktn8c0zx 205 6 note note VB cord-008426-ktn8c0zx 205 7 that that IN cord-008426-ktn8c0zx 205 8 , , , cord-008426-ktn8c0zx 205 9 while while IN cord-008426-ktn8c0zx 205 10 other other JJ cord-008426-ktn8c0zx 205 11 residues residue NNS cord-008426-ktn8c0zx 205 12 interacting interact VBG cord-008426-ktn8c0zx 205 13 with with IN cord-008426-ktn8c0zx 205 14 Glu-194 Glu-194 NNP cord-008426-ktn8c0zx 205 15 in in IN cord-008426-ktn8c0zx 205 16 SBMV SBMV NNP cord-008426-ktn8c0zx 205 17 - - HYPH cord-008426-ktn8c0zx 205 18 C C NNP cord-008426-ktn8c0zx 205 19 may may MD cord-008426-ktn8c0zx 205 20 mediate mediate VB cord-008426-ktn8c0zx 205 21 subunit subunit NN cord-008426-ktn8c0zx 205 22 contacts contact NNS cord-008426-ktn8c0zx 205 23 and and CC cord-008426-ktn8c0zx 205 24 are be VBP cord-008426-ktn8c0zx 205 25 important important JJ cord-008426-ktn8c0zx 205 26 in in IN cord-008426-ktn8c0zx 205 27 Ca Ca NNP cord-008426-ktn8c0zx 205 28 2 2 CD cord-008426-ktn8c0zx 205 29 + + SYM cord-008426-ktn8c0zx 205 30 binding bind VBG cord-008426-ktn8c0zx 205 31 ( ( -LRB- cord-008426-ktn8c0zx 205 32 Silva Silva NNP cord-008426-ktn8c0zx 205 33 and and CC cord-008426-ktn8c0zx 205 34 Rossmann Rossmann NNP cord-008426-ktn8c0zx 205 35 , , , cord-008426-ktn8c0zx 205 36 1987 1987 CD cord-008426-ktn8c0zx 205 37 ) ) -RRB- cord-008426-ktn8c0zx 205 38 , , , cord-008426-ktn8c0zx 205 39 no no DT cord-008426-ktn8c0zx 205 40 metal metal NN cord-008426-ktn8c0zx 205 41 ion ion NN cord-008426-ktn8c0zx 205 42 has have VBZ cord-008426-ktn8c0zx 205 43 been be VBN cord-008426-ktn8c0zx 205 44 detected detect VBN cord-008426-ktn8c0zx 205 45 in in IN cord-008426-ktn8c0zx 205 46 the the DT cord-008426-ktn8c0zx 205 47 refined refined JJ cord-008426-ktn8c0zx 205 48 crystallized crystallize VBN cord-008426-ktn8c0zx 205 49 virus virus NN cord-008426-ktn8c0zx 205 50 at at IN cord-008426-ktn8c0zx 205 51 this this DT cord-008426-ktn8c0zx 205 52 site site NN cord-008426-ktn8c0zx 205 53 . . . cord-008426-ktn8c0zx 206 1 The the DT cord-008426-ktn8c0zx 206 2 minor minor JJ cord-008426-ktn8c0zx 206 3 calcium calcium NN cord-008426-ktn8c0zx 206 4 - - HYPH cord-008426-ktn8c0zx 206 5 binding bind VBG cord-008426-ktn8c0zx 206 6 sites site NNS cord-008426-ktn8c0zx 206 7 proposed propose VBN cord-008426-ktn8c0zx 206 8 for for IN cord-008426-ktn8c0zx 206 9 SBMV SBMV NNP cord-008426-ktn8c0zx 206 10 - - HYPH cord-008426-ktn8c0zx 206 11 C C NNP cord-008426-ktn8c0zx 206 12 at at IN cord-008426-ktn8c0zx 206 13 Asp Asp NNP cord-008426-ktn8c0zx 206 14 138 138 CD cord-008426-ktn8c0zx 206 15 and and CC cord-008426-ktn8c0zx 206 16 Asp Asp NNP cord-008426-ktn8c0zx 206 17 141 141 CD cord-008426-ktn8c0zx 206 18 and and CC cord-008426-ktn8c0zx 206 19 the the DT cord-008426-ktn8c0zx 206 20 main main JJ cord-008426-ktn8c0zx 206 21 chain chain NN cord-008426-ktn8c0zx 206 22 carbonyls carbonyls NN cord-008426-ktn8c0zx 206 23 at at IN cord-008426-ktn8c0zx 206 24 residues residue NNS cord-008426-ktn8c0zx 206 25 199 199 CD cord-008426-ktn8c0zx 206 26 and and CC cord-008426-ktn8c0zx 206 27 259 259 CD cord-008426-ktn8c0zx 206 28 ( ( -LRB- cord-008426-ktn8c0zx 206 29 Rossmann Rossmann NNP cord-008426-ktn8c0zx 206 30 , , , cord-008426-ktn8c0zx 206 31 1984 1984 CD cord-008426-ktn8c0zx 206 32 ) ) -RRB- cord-008426-ktn8c0zx 207 1 ( ( -LRB- cord-008426-ktn8c0zx 207 2 Fig Fig NNP cord-008426-ktn8c0zx 207 3 . . . cord-008426-ktn8c0zx 208 1 5 5 LS cord-008426-ktn8c0zx 208 2 ) ) -RRB- cord-008426-ktn8c0zx 208 3 are be VBP cord-008426-ktn8c0zx 208 4 , , , cord-008426-ktn8c0zx 208 5 on on IN cord-008426-ktn8c0zx 208 6 the the DT cord-008426-ktn8c0zx 208 7 other other JJ cord-008426-ktn8c0zx 208 8 hand hand NN cord-008426-ktn8c0zx 208 9 , , , cord-008426-ktn8c0zx 208 10 conserved conserve VBN cord-008426-ktn8c0zx 208 11 in in IN cord-008426-ktn8c0zx 208 12 the the DT cord-008426-ktn8c0zx 208 13 SBMV SBMV NNP cord-008426-ktn8c0zx 208 14 - - HYPH cord-008426-ktn8c0zx 208 15 B b NN cord-008426-ktn8c0zx 208 16 sequence sequence NN cord-008426-ktn8c0zx 208 17 . . . cord-008426-ktn8c0zx 209 1 The the DT cord-008426-ktn8c0zx 209 2 proposed propose VBN cord-008426-ktn8c0zx 209 3 magnesium magnesium NN cord-008426-ktn8c0zx 209 4 - - HYPH cord-008426-ktn8c0zx 209 5 binding bind VBG cord-008426-ktn8c0zx 209 6 sites site NNS cord-008426-ktn8c0zx 209 7 at at IN cord-008426-ktn8c0zx 209 8 residues residue NNS cord-008426-ktn8c0zx 209 9 His -PRON- PRP$ cord-008426-ktn8c0zx 209 10 132 132 CD cord-008426-ktn8c0zx 209 11 , , , cord-008426-ktn8c0zx 209 12 Glu Glu NNP cord-008426-ktn8c0zx 209 13 229 229 CD cord-008426-ktn8c0zx 209 14 , , , cord-008426-ktn8c0zx 209 15 and and CC cord-008426-ktn8c0zx 209 16 Glu Glu NNP cord-008426-ktn8c0zx 209 17 77 77 CD cord-008426-ktn8c0zx 210 1 ( ( -LRB- cord-008426-ktn8c0zx 210 2 Rossmann Rossmann NNP cord-008426-ktn8c0zx 210 3 , , , cord-008426-ktn8c0zx 210 4 1984 1984 CD cord-008426-ktn8c0zx 210 5 ) ) -RRB- cord-008426-ktn8c0zx 211 1 ( ( -LRB- cord-008426-ktn8c0zx 211 2 Fig Fig NNP cord-008426-ktn8c0zx 211 3 . . . cord-008426-ktn8c0zx 212 1 5 5 LS cord-008426-ktn8c0zx 212 2 ) ) -RRB- cord-008426-ktn8c0zx 212 3 are be VBP cord-008426-ktn8c0zx 212 4 also also RB cord-008426-ktn8c0zx 212 5 conserved conserve VBN cord-008426-ktn8c0zx 212 6 in in IN cord-008426-ktn8c0zx 212 7 both both DT cord-008426-ktn8c0zx 212 8 strains strain NNS cord-008426-ktn8c0zx 212 9 . . . cord-008426-ktn8c0zx 213 1 Ngon Ngon NNP cord-008426-ktn8c0zx 213 2 A a DT cord-008426-ktn8c0zx 214 1 Yassi Yassi NNP cord-008426-ktn8c0zx 214 2 eta/. eta/. CD cord-008426-ktn8c0zx 215 1 ( ( -LRB- cord-008426-ktn8c0zx 215 2 t994 t994 JJ cord-008426-ktn8c0zx 215 3 ) ) -RRB- cord-008426-ktn8c0zx 215 4 noted note VBD cord-008426-ktn8c0zx 215 5 that that IN cord-008426-ktn8c0zx 215 6 the the DT cord-008426-ktn8c0zx 215 7 sequence sequence NN cord-008426-ktn8c0zx 215 8 of of IN cord-008426-ktn8c0zx 215 9 the the DT cord-008426-ktn8c0zx 215 10 N n CD cord-008426-ktn8c0zx 215 11 - - HYPH cord-008426-ktn8c0zx 215 12 terminal terminal NN cord-008426-ktn8c0zx 215 13 regions region NNS cord-008426-ktn8c0zx 215 14 of of IN cord-008426-ktn8c0zx 215 15 RYMV RYMV NNP cord-008426-ktn8c0zx 215 16 and and CC cord-008426-ktn8c0zx 215 17 SBMV SBMV NNP cord-008426-ktn8c0zx 215 18 - - HYPH cord-008426-ktn8c0zx 215 19 CP cp NN cord-008426-ktn8c0zx 215 20 coat coat NN cord-008426-ktn8c0zx 215 21 proteins protein NNS cord-008426-ktn8c0zx 215 22 resembles resemble VBZ cord-008426-ktn8c0zx 215 23 a a DT cord-008426-ktn8c0zx 215 24 bipartite bipartite JJ cord-008426-ktn8c0zx 215 25 nuclear nuclear JJ cord-008426-ktn8c0zx 215 26 targetting targetting NN cord-008426-ktn8c0zx 215 27 motif motif NN cord-008426-ktn8c0zx 215 28 ( ( -LRB- cord-008426-ktn8c0zx 215 29 Dingwatl Dingwatl NNP cord-008426-ktn8c0zx 215 30 and and CC cord-008426-ktn8c0zx 215 31 Laskey Laskey NNP cord-008426-ktn8c0zx 215 32 , , , cord-008426-ktn8c0zx 215 33 1991 1991 CD cord-008426-ktn8c0zx 215 34 ) ) -RRB- cord-008426-ktn8c0zx 215 35 . . . cord-008426-ktn8c0zx 216 1 There there EX cord-008426-ktn8c0zx 216 2 is be VBZ cord-008426-ktn8c0zx 216 3 full full JJ cord-008426-ktn8c0zx 216 4 homology homology NN cord-008426-ktn8c0zx 216 5 be be VB cord-008426-ktn8c0zx 216 6 - - HYPH cord-008426-ktn8c0zx 216 7 tween tween NN cord-008426-ktn8c0zx 216 8 this this DT cord-008426-ktn8c0zx 216 9 region region NN cord-008426-ktn8c0zx 216 10 of of IN cord-008426-ktn8c0zx 216 11 SBMV SBMV NNP cord-008426-ktn8c0zx 216 12 - - HYPH cord-008426-ktn8c0zx 216 13 C C NNP cord-008426-ktn8c0zx 216 14 and and CC cord-008426-ktn8c0zx 216 15 that that DT cord-008426-ktn8c0zx 216 16 of of IN cord-008426-ktn8c0zx 216 17 SBMV SBMV NNP cord-008426-ktn8c0zx 216 18 - - HYPH cord-008426-ktn8c0zx 216 19 B B NNP cord-008426-ktn8c0zx 216 20 ( ( -LRB- cord-008426-ktn8c0zx 216 21 Fig Fig NNP cord-008426-ktn8c0zx 216 22 . . . cord-008426-ktn8c0zx 216 23 _SP cord-008426-ktn8c0zx 216 24 5 5 CD cord-008426-ktn8c0zx 216 25 ) ) -RRB- cord-008426-ktn8c0zx 216 26 , , , cord-008426-ktn8c0zx 216 27 which which WDT cord-008426-ktn8c0zx 216 28 could could MD cord-008426-ktn8c0zx 216 29 relate relate VB cord-008426-ktn8c0zx 216 30 to to IN cord-008426-ktn8c0zx 216 31 the the DT cord-008426-ktn8c0zx 216 32 occurrence occurrence NN cord-008426-ktn8c0zx 216 33 of of IN cord-008426-ktn8c0zx 216 34 SBMV SBMV NNP cord-008426-ktn8c0zx 216 35 - - HYPH cord-008426-ktn8c0zx 216 36 B B NNP cord-008426-ktn8c0zx 216 37 in in IN cord-008426-ktn8c0zx 216 38 the the DT cord-008426-ktn8c0zx 216 39 nucleus nucleus NN cord-008426-ktn8c0zx 216 40 ( ( -LRB- cord-008426-ktn8c0zx 216 41 de de FW cord-008426-ktn8c0zx 216 42 Zoeten Zoeten NNP cord-008426-ktn8c0zx 216 43 and and CC cord-008426-ktn8c0zx 216 44 Gaard Gaard NNP cord-008426-ktn8c0zx 216 45 , , , cord-008426-ktn8c0zx 216 46 1969 1969 CD cord-008426-ktn8c0zx 216 47 ) ) -RRB- cord-008426-ktn8c0zx 216 48 . . . cord-008426-ktn8c0zx 217 1 The the DT cord-008426-ktn8c0zx 217 2 putative putative JJ cord-008426-ktn8c0zx 217 3 genome genome NN cord-008426-ktn8c0zx 217 4 organization organization NN cord-008426-ktn8c0zx 217 5 of of IN cord-008426-ktn8c0zx 217 6 the the DT cord-008426-ktn8c0zx 217 7 SBMV SBMV NNP cord-008426-ktn8c0zx 217 8 - - HYPH cord-008426-ktn8c0zx 217 9 B B NNP cord-008426-ktn8c0zx 217 10 ge ge NNP cord-008426-ktn8c0zx 217 11 - - HYPH cord-008426-ktn8c0zx 217 12 n0me n0me NNP cord-008426-ktn8c0zx 217 13 ( ( -LRB- cord-008426-ktn8c0zx 217 14 Fig Fig NNP cord-008426-ktn8c0zx 217 15 . . . cord-008426-ktn8c0zx 217 16 1 1 CD cord-008426-ktn8c0zx 217 17 ) ) -RRB- cord-008426-ktn8c0zx 217 18 raises raise VBZ cord-008426-ktn8c0zx 217 19 interesting interesting JJ cord-008426-ktn8c0zx 217 20 questions question NNS cord-008426-ktn8c0zx 217 21 in in IN cord-008426-ktn8c0zx 217 22 terms term NNS cord-008426-ktn8c0zx 217 23 of of IN cord-008426-ktn8c0zx 217 24 its -PRON- PRP$ cord-008426-ktn8c0zx 217 25 overall overall JJ cord-008426-ktn8c0zx 217 26 translational translational JJ cord-008426-ktn8c0zx 217 27 strategies strategy NNS cord-008426-ktn8c0zx 217 28 , , , cord-008426-ktn8c0zx 217 29 which which WDT cord-008426-ktn8c0zx 217 30 are be VBP cord-008426-ktn8c0zx 217 31 also also RB cord-008426-ktn8c0zx 217 32 relevant relevant JJ cord-008426-ktn8c0zx 217 33 to to IN cord-008426-ktn8c0zx 217 34 the the DT cord-008426-ktn8c0zx 217 35 other other JJ cord-008426-ktn8c0zx 217 36 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 217 37 . . . cord-008426-ktn8c0zx 218 1 ORF ORF NNP cord-008426-ktn8c0zx 218 2 3 3 CD cord-008426-ktn8c0zx 218 3 , , , cord-008426-ktn8c0zx 218 4 the the DT cord-008426-ktn8c0zx 218 5 capsid capsid NN cord-008426-ktn8c0zx 218 6 protein protein NN cord-008426-ktn8c0zx 218 7 cistron cistron NN cord-008426-ktn8c0zx 218 8 , , , cord-008426-ktn8c0zx 218 9 is be VBZ cord-008426-ktn8c0zx 218 10 thought think VBN cord-008426-ktn8c0zx 218 11 to to TO cord-008426-ktn8c0zx 218 12 be be VB cord-008426-ktn8c0zx 218 13 expressed express VBN cord-008426-ktn8c0zx 218 14 via via IN cord-008426-ktn8c0zx 218 15 a a DT cord-008426-ktn8c0zx 218 16 subgenomic subgenomic NN cord-008426-ktn8c0zx 218 17 rnRNA rnrna NN cord-008426-ktn8c0zx 219 1 ( ( -LRB- cord-008426-ktn8c0zx 219 2 Ghosh Ghosh NNP cord-008426-ktn8c0zx 219 3 et et NNP cord-008426-ktn8c0zx 219 4 aL aL NNP cord-008426-ktn8c0zx 219 5 , , , cord-008426-ktn8c0zx 219 6 11981 11981 CD cord-008426-ktn8c0zx 220 1 Mang Mang NNP cord-008426-ktn8c0zx 220 2 eta/. eta/. CD cord-008426-ktn8c0zx 220 3 , , , cord-008426-ktn8c0zx 220 4 1982 1982 CD cord-008426-ktn8c0zx 220 5 ) ) -RRB- cord-008426-ktn8c0zx 220 6 . . . cord-008426-ktn8c0zx 221 1 The the DT cord-008426-ktn8c0zx 221 2 expression expression NN cord-008426-ktn8c0zx 221 3 of of IN cord-008426-ktn8c0zx 221 4 ORF2 ORF2 NNP cord-008426-ktn8c0zx 221 5 is be VBZ cord-008426-ktn8c0zx 221 6 , , , cord-008426-ktn8c0zx 221 7 hdwever hdwever NNP cord-008426-ktn8c0zx 221 8 , , , cord-008426-ktn8c0zx 221 9 less less RBR cord-008426-ktn8c0zx 221 10 certain certain JJ cord-008426-ktn8c0zx 221 11 as as IN cord-008426-ktn8c0zx 221 12 there there EX cord-008426-ktn8c0zx 221 13 is be VBZ cord-008426-ktn8c0zx 221 14 no no DT cord-008426-ktn8c0zx 221 15 evidence evidence NN cord-008426-ktn8c0zx 221 16 for for IN cord-008426-ktn8c0zx 221 17 a a DT cord-008426-ktn8c0zx 221 18 subgenomic subgenomic JJ cord-008426-ktn8c0zx 221 19 mRNA mrna NN cord-008426-ktn8c0zx 221 20 associated associate VBN cord-008426-ktn8c0zx 221 21 with with IN cord-008426-ktn8c0zx 221 22 it -PRON- PRP cord-008426-ktn8c0zx 221 23 which which WDT cord-008426-ktn8c0zx 221 24 would would MD cord-008426-ktn8c0zx 221 25 suggest suggest VB cord-008426-ktn8c0zx 221 26 that that IN cord-008426-ktn8c0zx 221 27 it -PRON- PRP cord-008426-ktn8c0zx 221 28 is be VBZ cord-008426-ktn8c0zx 221 29 a a DT cord-008426-ktn8c0zx 221 30 " " `` cord-008426-ktn8c0zx 221 31 closed closed JJ cord-008426-ktn8c0zx 221 32 " " '' cord-008426-ktn8c0zx 221 33 ORF ORF NNP cord-008426-ktn8c0zx 221 34 . . . cord-008426-ktn8c0zx 222 1 There there EX cord-008426-ktn8c0zx 222 2 are be VBP cord-008426-ktn8c0zx 222 3 three three CD cord-008426-ktn8c0zx 222 4 possibilities possibility NNS cord-008426-ktn8c0zx 222 5 for for IN cord-008426-ktn8c0zx 222 6 its -PRON- PRP$ cord-008426-ktn8c0zx 222 7 expression expression NN cord-008426-ktn8c0zx 222 8 , , , cord-008426-ktn8c0zx 222 9 frameshift frameshift NN cord-008426-ktn8c0zx 222 10 , , , cord-008426-ktn8c0zx 222 11 read read VBN cord-008426-ktn8c0zx 222 12 through through IN cord-008426-ktn8c0zx 222 13 of of IN cord-008426-ktn8c0zx 222 14 a a DT cord-008426-ktn8c0zx 222 15 weak weak JJ cord-008426-ktn8c0zx 222 16 stop stop NN cord-008426-ktn8c0zx 222 17 codon codon NN cord-008426-ktn8c0zx 222 18 , , , cord-008426-ktn8c0zx 222 19 or or CC cord-008426-ktn8c0zx 222 20 internal internal JJ cord-008426-ktn8c0zx 222 21 initiation initiation NN cord-008426-ktn8c0zx 222 22 . . . cord-008426-ktn8c0zx 223 1 Frameshift frameshift NN cord-008426-ktn8c0zx 223 2 would would MD cord-008426-ktn8c0zx 223 3 be be VB cord-008426-ktn8c0zx 223 4 feasible feasible JJ cord-008426-ktn8c0zx 223 5 for for IN cord-008426-ktn8c0zx 223 6 SBMV SBMV NNP cord-008426-ktn8c0zx 223 7 - - HYPH cord-008426-ktn8c0zx 223 8 C C NNP cord-008426-ktn8c0zx 223 9 and and CC cord-008426-ktn8c0zx 223 10 , , , cord-008426-ktn8c0zx 223 11 after after IN cord-008426-ktn8c0zx 223 12 read read VBN cord-008426-ktn8c0zx 223 13 through through IN cord-008426-ktn8c0zx 223 14 of of IN cord-008426-ktn8c0zx 223 15 a a DT cord-008426-ktn8c0zx 223 16 weak weak JJ cord-008426-ktn8c0zx 223 17 stop stop NN cord-008426-ktn8c0zx 223 18 codon codon NN cord-008426-ktn8c0zx 223 19 ( ( -LRB- cord-008426-ktn8c0zx 223 20 indicated indicate VBN cord-008426-ktn8c0zx 223 21 by by IN cord-008426-ktn8c0zx 223 22 amino amino JJ cord-008426-ktn8c0zx 223 23 acids acid NNS cord-008426-ktn8c0zx 224 1 Jn Jn NNP cord-008426-ktn8c0zx 224 2 lowercase lowercase NN cord-008426-ktn8c0zx 224 3 letters letter NNS cord-008426-ktn8c0zx 224 4 in in IN cord-008426-ktn8c0zx 224 5 Fig Fig NNP cord-008426-ktn8c0zx 224 6 . . NNP cord-008426-ktn8c0zx 224 7 2 2 CD cord-008426-ktn8c0zx 224 8 ) ) -RRB- cord-008426-ktn8c0zx 224 9 , , , cord-008426-ktn8c0zx 224 10 in in IN cord-008426-ktn8c0zx 224 11 SBMV SBMV NNP cord-008426-ktn8c0zx 224 12 - - HYPH cord-008426-ktn8c0zx 224 13 B. B. NNP cord-008426-ktn8c0zx 225 1 However however RB cord-008426-ktn8c0zx 225 2 , , , cord-008426-ktn8c0zx 225 3 RYMV RYMV NNP cord-008426-ktn8c0zx 225 4 ORFs ORFs NNP cord-008426-ktn8c0zx 225 5 1 1 CD cord-008426-ktn8c0zx 225 6 and and CC cord-008426-ktn8c0zx 225 7 2 2 CD cord-008426-ktn8c0zx 225 8 are be VBP cord-008426-ktn8c0zx 225 9 in in IN cord-008426-ktn8c0zx 225 10 the the DT cord-008426-ktn8c0zx 225 11 same same JJ cord-008426-ktn8c0zx 225 12 frame frame NN cord-008426-ktn8c0zx 226 1 separated separate VBD cord-008426-ktn8c0zx 226 2 byan byan NNP cord-008426-ktn8c0zx 226 3 amber amber NNP cord-008426-ktn8c0zx 226 4 and and CC cord-008426-ktn8c0zx 226 5 ochre ochre NNP cord-008426-ktn8c0zx 227 1 stop stop VB cord-008426-ktn8c0zx 227 2 codon codon NNP cord-008426-ktn8c0zx 228 1 ( ( -LRB- cord-008426-ktn8c0zx 228 2 Ngon Ngon NNP cord-008426-ktn8c0zx 228 3 A A NNP cord-008426-ktn8c0zx 229 1 Yassi Yassi NNP cord-008426-ktn8c0zx 229 2 et et FW cord-008426-ktn8c0zx 229 3 al al NNP cord-008426-ktn8c0zx 229 4 . . NNP cord-008426-ktn8c0zx 229 5 , , , cord-008426-ktn8c0zx 229 6 1994 1994 CD cord-008426-ktn8c0zx 229 7 ) ) -RRB- cord-008426-ktn8c0zx 229 8 , , , cord-008426-ktn8c0zx 229 9 which which WDT cord-008426-ktn8c0zx 229 10 are be VBP cord-008426-ktn8c0zx 229 11 unlikely unlikely JJ cord-008426-ktn8c0zx 229 12 to to TO cord-008426-ktn8c0zx 229 13 be be VB cord-008426-ktn8c0zx 229 14 both both DT cord-008426-ktn8c0zx 229 15 read read VBN cord-008426-ktn8c0zx 229 16 through through RP cord-008426-ktn8c0zx 229 17 at at IN cord-008426-ktn8c0zx 229 18 a a DT cord-008426-ktn8c0zx 229 19 significant significant JJ cord-008426-ktn8c0zx 229 20 level level NN cord-008426-ktn8c0zx 229 21 . . . cord-008426-ktn8c0zx 230 1 The the DT cord-008426-ktn8c0zx 230 2 AUG AUG NNP cord-008426-ktn8c0zx 230 3 codon codon NN cord-008426-ktn8c0zx 230 4 for for IN cord-008426-ktn8c0zx 230 5 ORF ORF NNP cord-008426-ktn8c0zx 230 6 1 1 CD cord-008426-ktn8c0zx 230 7 of of IN cord-008426-ktn8c0zx 230 8 each each DT cord-008426-ktn8c0zx 230 9 of of IN cord-008426-ktn8c0zx 230 10 the the DT cord-008426-ktn8c0zx 230 11 three three CD cord-008426-ktn8c0zx 230 12 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 230 13 is be VBZ cord-008426-ktn8c0zx 230 14 the the DT cord-008426-ktn8c0zx 230 15 first first JJ cord-008426-ktn8c0zx 230 16 in in IN cord-008426-ktn8c0zx 230 17 the the DT cord-008426-ktn8c0zx 230 18 sequence sequence NN cord-008426-ktn8c0zx 230 19 and and CC cord-008426-ktn8c0zx 230 20 is be VBZ cord-008426-ktn8c0zx 230 21 in in IN cord-008426-ktn8c0zx 230 22 a a DT cord-008426-ktn8c0zx 230 23 poor poor JJ cord-008426-ktn8c0zx 230 24 context context NN cord-008426-ktn8c0zx 230 25 for for IN cord-008426-ktn8c0zx 230 26 initiation initiation NN cord-008426-ktn8c0zx 230 27 of of IN cord-008426-ktn8c0zx 230 28 translation translation NN cord-008426-ktn8c0zx 230 29 ( ( -LRB- cord-008426-ktn8c0zx 230 30 Lutcke Lutcke NNP cord-008426-ktn8c0zx 230 31 et et FW cord-008426-ktn8c0zx 230 32 aL aL NNP cord-008426-ktn8c0zx 230 33 , , , cord-008426-ktn8c0zx 230 34 1987 1987 CD cord-008426-ktn8c0zx 230 35 ; ; : cord-008426-ktn8c0zx 231 1 Kozak Kozak NNP cord-008426-ktn8c0zx 231 2 , , , cord-008426-ktn8c0zx 231 3 1989 1989 CD cord-008426-ktn8c0zx 231 4 ) ) -RRB- cord-008426-ktn8c0zx 231 5 . . . cord-008426-ktn8c0zx 232 1 In in IN cord-008426-ktn8c0zx 232 2 SBMV SBMV NNP cord-008426-ktn8c0zx 232 3 - - HYPH cord-008426-ktn8c0zx 232 4 B B NNP cord-008426-ktn8c0zx 232 5 and and CC cord-008426-ktn8c0zx 232 6 SBMV SBMV NNP cord-008426-ktn8c0zx 232 7 - - HYPH cord-008426-ktn8c0zx 232 8 C C NNP cord-008426-ktn8c0zx 232 9 there there EX cord-008426-ktn8c0zx 232 10 is be VBZ cord-008426-ktn8c0zx 232 11 0nly 0nly : cord-008426-ktn8c0zx 232 12 one one CD cord-008426-ktn8c0zx 232 13 other other JJ cord-008426-ktn8c0zx 232 14 AUG AUG NNP cord-008426-ktn8c0zx 232 15 in in IN cord-008426-ktn8c0zx 232 16 any any DT cord-008426-ktn8c0zx 232 17 reading reading NN cord-008426-ktn8c0zx 232 18 frame frame NN cord-008426-ktn8c0zx 232 19 before before IN cord-008426-ktn8c0zx 232 20 that that DT cord-008426-ktn8c0zx 232 21 of of IN cord-008426-ktn8c0zx 232 22 0RF2 0rf2 CD cord-008426-ktn8c0zx 233 1 and and CC cord-008426-ktn8c0zx 233 2 that that DT cord-008426-ktn8c0zx 233 3 is be VBZ cord-008426-ktn8c0zx 233 4 also also RB cord-008426-ktn8c0zx 233 5 in in IN cord-008426-ktn8c0zx 233 6 a a DT cord-008426-ktn8c0zx 233 7 poor poor JJ cord-008426-ktn8c0zx 233 8 context context NN cord-008426-ktn8c0zx 233 9 ; ; : cord-008426-ktn8c0zx 233 10 in in IN cord-008426-ktn8c0zx 233 11 RYMV RYMV NNP cord-008426-ktn8c0zx 233 12 there there EX cord-008426-ktn8c0zx 233 13 are be VBP cord-008426-ktn8c0zx 233 14 no no DT cord-008426-ktn8c0zx 233 15 AUGs aug NNS cord-008426-ktn8c0zx 233 16 between between IN cord-008426-ktn8c0zx 233 17 those those DT cord-008426-ktn8c0zx 233 18 of of IN cord-008426-ktn8c0zx 233 19 ORFs ORFs NNP cord-008426-ktn8c0zx 233 20 1 1 CD cord-008426-ktn8c0zx 233 21 and and CC cord-008426-ktn8c0zx 233 22 2 2 CD cord-008426-ktn8c0zx 233 23 . . . cord-008426-ktn8c0zx 234 1 For for IN cord-008426-ktn8c0zx 234 2 all all DT cord-008426-ktn8c0zx 234 3 three three CD cord-008426-ktn8c0zx 234 4 sobemoviruses sobemoviruse NNS cord-008426-ktn8c0zx 234 5 the the DT cord-008426-ktn8c0zx 234 6 AUG AUG NNP cord-008426-ktn8c0zx 234 7 of of IN cord-008426-ktn8c0zx 234 8 ORF ORF NNP cord-008426-ktn8c0zx 234 9 2 2 CD cord-008426-ktn8c0zx 234 10 is be VBZ cord-008426-ktn8c0zx 234 11 in in IN cord-008426-ktn8c0zx 234 12 a a DT cord-008426-ktn8c0zx 234 13 favorable favorable JJ cord-008426-ktn8c0zx 234 14 context context NN cord-008426-ktn8c0zx 234 15 . . . cord-008426-ktn8c0zx 235 1 This this DT cord-008426-ktn8c0zx 235 2 raises raise VBZ cord-008426-ktn8c0zx 235 3 the the DT cord-008426-ktn8c0zx 235 4 possibility possibility NN cord-008426-ktn8c0zx 235 5 is be VBZ cord-008426-ktn8c0zx 235 6 that that IN cord-008426-ktn8c0zx 235 7 the the DT cord-008426-ktn8c0zx 235 8 expression expression NN cord-008426-ktn8c0zx 235 9 of of IN cord-008426-ktn8c0zx 235 10 0RF2 0rf2 CD cord-008426-ktn8c0zx 235 11 may may MD cord-008426-ktn8c0zx 235 12 involve involve VB cord-008426-ktn8c0zx 235 13 a a DT cord-008426-ktn8c0zx 235 14 mechanism mechanism NN cord-008426-ktn8c0zx 235 15 of of IN cord-008426-ktn8c0zx 235 16 internal internal JJ cord-008426-ktn8c0zx 235 17 initiation initiation NN cord-008426-ktn8c0zx 235 18 which which WDT cord-008426-ktn8c0zx 235 19 would would MD cord-008426-ktn8c0zx 235 20 resemble resemble VB cord-008426-ktn8c0zx 235 21 the the DT cord-008426-ktn8c0zx 235 22 expression expression NN cord-008426-ktn8c0zx 235 23 strategy strategy NN cord-008426-ktn8c0zx 235 24 suggested suggest VBN cord-008426-ktn8c0zx 235 25 for for IN cord-008426-ktn8c0zx 235 26 some some DT cord-008426-ktn8c0zx 235 27 of of IN cord-008426-ktn8c0zx 235 28 the the DT cord-008426-ktn8c0zx 235 29 cistrons cistron NNS cord-008426-ktn8c0zx 235 30 of of IN cord-008426-ktn8c0zx 235 31 the the DT cord-008426-ktn8c0zx 235 32 coronaviruses coronaviruse NNS cord-008426-ktn8c0zx 235 33 ( ( -LRB- cord-008426-ktn8c0zx 235 34 reviewed review VBN cord-008426-ktn8c0zx 235 35 by by IN cord-008426-ktn8c0zx 235 36 Spann Spann NNP cord-008426-ktn8c0zx 235 37 et et NNP cord-008426-ktn8c0zx 235 38 al al NNP cord-008426-ktn8c0zx 235 39 . . NNP cord-008426-ktn8c0zx 235 40 , , , cord-008426-ktn8c0zx 235 41 1988 1988 CD cord-008426-ktn8c0zx 235 42 ) ) -RRB- cord-008426-ktn8c0zx 235 43 . . . cord-008426-ktn8c0zx 236 1 Despite despite IN cord-008426-ktn8c0zx 236 2 their -PRON- PRP$ cord-008426-ktn8c0zx 236 3 differing differ VBG cord-008426-ktn8c0zx 236 4 host host NN cord-008426-ktn8c0zx 236 5 specificities specificity NNS cord-008426-ktn8c0zx 236 6 SBMV SBMV NNP cord-008426-ktn8c0zx 236 7 - - HYPH cord-008426-ktn8c0zx 236 8 B B NNP cord-008426-ktn8c0zx 236 9 and and CC cord-008426-ktn8c0zx 236 10 SBMV SBMV NNP cord-008426-ktn8c0zx 236 11 - - HYPH cord-008426-ktn8c0zx 236 12 O O NNP cord-008426-ktn8c0zx 236 13 are be VBP cord-008426-ktn8c0zx 236 14 classified classify VBN cord-008426-ktn8c0zx 236 15 as as IN cord-008426-ktn8c0zx 236 16 two two CD cord-008426-ktn8c0zx 236 17 strains strain NNS cord-008426-ktn8c0zx 236 18 of of IN cord-008426-ktn8c0zx 236 19 the the DT cord-008426-ktn8c0zx 236 20 same same JJ cord-008426-ktn8c0zx 236 21 virus virus NN cord-008426-ktn8c0zx 236 22 0nthe 0nthe CD cord-008426-ktn8c0zx 236 23 basis basis NN cord-008426-ktn8c0zx 236 24 of of IN cord-008426-ktn8c0zx 236 25 morphological morphological JJ cord-008426-ktn8c0zx 236 26 and and CC cord-008426-ktn8c0zx 236 27 physiochemical physiochemical JJ cord-008426-ktn8c0zx 236 28 similarities similarity NNS cord-008426-ktn8c0zx 236 29 and and CC cord-008426-ktn8c0zx 236 30 their -PRON- PRP$ cord-008426-ktn8c0zx 236 31 serological serological JJ cord-008426-ktn8c0zx 236 32 cross cross NN cord-008426-ktn8c0zx 236 33 - - NN cord-008426-ktn8c0zx 236 34 reactivity reactivity JJ cord-008426-ktn8c0zx 236 35 ( ( -LRB- cord-008426-ktn8c0zx 236 36 Shepherd Shepherd NNP cord-008426-ktn8c0zx 236 37 and and CC cord-008426-ktn8c0zx 236 38 Fulton Fulton NNP cord-008426-ktn8c0zx 236 39 , , , cord-008426-ktn8c0zx 236 40 1962 1962 CD cord-008426-ktn8c0zx 236 41 ) ) -RRB- cord-008426-ktn8c0zx 236 42 . . . cord-008426-ktn8c0zx 237 1 Detailed detailed JJ cord-008426-ktn8c0zx 237 2 structural structural JJ cord-008426-ktn8c0zx 237 3 studies study NNS cord-008426-ktn8c0zx 237 4 , , , cord-008426-ktn8c0zx 237 5 including include VBG cord-008426-ktn8c0zx 237 6 extensive extensive JJ cord-008426-ktn8c0zx 237 7 studies study NNS cord-008426-ktn8c0zx 237 8 on on IN cord-008426-ktn8c0zx 237 9 their -PRON- PRP$ cord-008426-ktn8c0zx 237 10 virion virion NN cord-008426-ktn8c0zx 237 11 assembly assembly NN cord-008426-ktn8c0zx 237 12 and and CC cord-008426-ktn8c0zx 237 13 disassembly disassembly NN cord-008426-ktn8c0zx 237 14 under under IN cord-008426-ktn8c0zx 237 15 various various JJ cord-008426-ktn8c0zx 237 16 physiochemical physiochemical JJ cord-008426-ktn8c0zx 237 17 conditions condition NNS cord-008426-ktn8c0zx 238 1 ( ( -LRB- cord-008426-ktn8c0zx 238 2 Brisco Brisco NNP cord-008426-ktn8c0zx 238 3 et et NNP cord-008426-ktn8c0zx 238 4 al al NNP cord-008426-ktn8c0zx 238 5 , , , cord-008426-ktn8c0zx 238 6 , , , cord-008426-ktn8c0zx 238 7 1985a 1985a CD cord-008426-ktn8c0zx 238 8 ; ; : cord-008426-ktn8c0zx 238 9 Shields Shields NNP cord-008426-ktn8c0zx 238 10 et et NNP cord-008426-ktn8c0zx 238 11 aL aL NNP cord-008426-ktn8c0zx 238 12 , , , cord-008426-ktn8c0zx 238 13 1989 1989 CD cord-008426-ktn8c0zx 238 14 ) ) -RRB- cord-008426-ktn8c0zx 238 15 again again RB cord-008426-ktn8c0zx 238 16 highlighted highlight VBD cord-008426-ktn8c0zx 238 17 the the DT cord-008426-ktn8c0zx 238 18 close close JJ cord-008426-ktn8c0zx 238 19 similarity similarity NN cord-008426-ktn8c0zx 238 20 of of IN cord-008426-ktn8c0zx 238 21 the the DT cord-008426-ktn8c0zx 238 22 two two CD cord-008426-ktn8c0zx 238 23 strains strain NNS cord-008426-ktn8c0zx 238 24 . . . cord-008426-ktn8c0zx 239 1 However however RB cord-008426-ktn8c0zx 239 2 , , , cord-008426-ktn8c0zx 239 3 as as IN cord-008426-ktn8c0zx 239 4 with with IN cord-008426-ktn8c0zx 239 5 the the DT cord-008426-ktn8c0zx 239 6 earlier early JJR cord-008426-ktn8c0zx 239 7 immunological immunological JJ cord-008426-ktn8c0zx 239 8 evidence evidence NN cord-008426-ktn8c0zx 239 9 , , , cord-008426-ktn8c0zx 239 10 these these DT cord-008426-ktn8c0zx 239 11 data datum NNS cord-008426-ktn8c0zx 239 12 related relate VBD cord-008426-ktn8c0zx 239 13 primarilyto primarilyto NNP cord-008426-ktn8c0zx 239 14 the the DT cord-008426-ktn8c0zx 239 15 properties property NNS cord-008426-ktn8c0zx 239 16 of of IN cord-008426-ktn8c0zx 239 17 the the DT cord-008426-ktn8c0zx 239 18 virion virion NN cord-008426-ktn8c0zx 239 19 proteins protein NNS cord-008426-ktn8c0zx 239 20 . . . cord-008426-ktn8c0zx 240 1 The the DT cord-008426-ktn8c0zx 240 2 availability availability NN cord-008426-ktn8c0zx 240 3 of of IN cord-008426-ktn8c0zx 240 4 the the DT cord-008426-ktn8c0zx 240 5 complete complete JJ cord-008426-ktn8c0zx 240 6 nucleotide nucleotide JJ cord-008426-ktn8c0zx 240 7 sequence sequence NN cord-008426-ktn8c0zx 240 8 of of IN cord-008426-ktn8c0zx 240 9 SBMV SBMV NNP cord-008426-ktn8c0zx 240 10 - - HYPH cord-008426-ktn8c0zx 240 11 B B NNP cord-008426-ktn8c0zx 240 12 raises raise VBZ cord-008426-ktn8c0zx 240 13 the the DT cord-008426-ktn8c0zx 240 14 interesting interesting JJ cord-008426-ktn8c0zx 240 15 question question NN cord-008426-ktn8c0zx 240 16 as as IN cord-008426-ktn8c0zx 240 17 to to IN cord-008426-ktn8c0zx 240 18 whether whether IN cord-008426-ktn8c0zx 240 19 it -PRON- PRP cord-008426-ktn8c0zx 240 20 and and CC cord-008426-ktn8c0zx 240 21 SBMV SBMV NNP cord-008426-ktn8c0zx 240 22 - - HYPH cord-008426-ktn8c0zx 240 23 C C NNP cord-008426-ktn8c0zx 240 24 are be VBP cord-008426-ktn8c0zx 240 25 truly truly RB cord-008426-ktn8c0zx 240 26 strains strain NNS cord-008426-ktn8c0zx 240 27 of of IN cord-008426-ktn8c0zx 240 28 the the DT cord-008426-ktn8c0zx 240 29 same same JJ cord-008426-ktn8c0zx 240 30 virus virus NN cord-008426-ktn8c0zx 240 31 or or CC cord-008426-ktn8c0zx 240 32 whether whether IN cord-008426-ktn8c0zx 240 33 or or CC cord-008426-ktn8c0zx 240 34 not not RB cord-008426-ktn8c0zx 240 35 they -PRON- PRP cord-008426-ktn8c0zx 240 36 should should MD cord-008426-ktn8c0zx 240 37 be be VB cord-008426-ktn8c0zx 240 38 reclassified reclassify VBN cord-008426-ktn8c0zx 240 39 as as IN cord-008426-ktn8c0zx 240 40 unique unique JJ cord-008426-ktn8c0zx 240 41 viruses virus NNS cord-008426-ktn8c0zx 240 42 within within IN cord-008426-ktn8c0zx 240 43 the the DT cord-008426-ktn8c0zx 240 44 sobemovirus sobemovirus NNP cord-008426-ktn8c0zx 240 45 group group NN cord-008426-ktn8c0zx 240 46 . . . cord-008426-ktn8c0zx 241 1 Various various JJ cord-008426-ktn8c0zx 241 2 molecular molecular JJ cord-008426-ktn8c0zx 241 3 criteria criterion NNS cord-008426-ktn8c0zx 241 4 , , , cord-008426-ktn8c0zx 241 5 such such JJ cord-008426-ktn8c0zx 241 6 as as IN cord-008426-ktn8c0zx 241 7 3 3 CD cord-008426-ktn8c0zx 241 8 ' ' POS cord-008426-ktn8c0zx 241 9 noncoding noncoding JJ cord-008426-ktn8c0zx 241 10 se se NNP cord-008426-ktn8c0zx 241 11 - - HYPH cord-008426-ktn8c0zx 241 12 quences quences NNP cord-008426-ktn8c0zx 241 13 ( ( -LRB- cord-008426-ktn8c0zx 241 14 Frenkel Frenkel NNP cord-008426-ktn8c0zx 241 15 et et NNP cord-008426-ktn8c0zx 241 16 al al NNP cord-008426-ktn8c0zx 241 17 . . NNP cord-008426-ktn8c0zx 241 18 , , , cord-008426-ktn8c0zx 241 19 1989 1989 CD cord-008426-ktn8c0zx 241 20 ) ) -RRB- cord-008426-ktn8c0zx 241 21 or or CC cord-008426-ktn8c0zx 241 22 coat coat NN cord-008426-ktn8c0zx 241 23 protein protein NN cord-008426-ktn8c0zx 241 24 sequences sequence NNS cord-008426-ktn8c0zx 241 25 , , , cord-008426-ktn8c0zx 241 26 have have VBP cord-008426-ktn8c0zx 241 27 been be VBN cord-008426-ktn8c0zx 241 28 used use VBN cord-008426-ktn8c0zx 241 29 to to TO cord-008426-ktn8c0zx 241 30 classify classify VB cord-008426-ktn8c0zx 241 31 viruses virus NNS cord-008426-ktn8c0zx 241 32 either either CC cord-008426-ktn8c0zx 241 33 as as IN cord-008426-ktn8c0zx 241 34 distinct distinct JJ cord-008426-ktn8c0zx 241 35 entities entity NNS cord-008426-ktn8c0zx 241 36 or or CC cord-008426-ktn8c0zx 241 37 as as IN cord-008426-ktn8c0zx 241 38 strains strain NNS cord-008426-ktn8c0zx 241 39 . . . cord-008426-ktn8c0zx 242 1 On on IN cord-008426-ktn8c0zx 242 2 the the DT cord-008426-ktn8c0zx 242 3 basis basis NN cord-008426-ktn8c0zx 242 4 of of IN cord-008426-ktn8c0zx 242 5 3 3 CD cord-008426-ktn8c0zx 242 6 ' ' POS cord-008426-ktn8c0zx 242 7 noncoding noncoding JJ cord-008426-ktn8c0zx 242 8 sequence sequence NN cord-008426-ktn8c0zx 242 9 SBMV SBMV NNP cord-008426-ktn8c0zx 242 10 - - HYPH cord-008426-ktn8c0zx 242 11 B B NNP cord-008426-ktn8c0zx 242 12 and and CC cord-008426-ktn8c0zx 242 13 SBMV SBMV NNP cord-008426-ktn8c0zx 242 14 - - HYPH cord-008426-ktn8c0zx 242 15 C C NNP cord-008426-ktn8c0zx 242 16 would would MD cord-008426-ktn8c0zx 242 17 be be VB cord-008426-ktn8c0zx 242 18 recognized recognize VBN cord-008426-ktn8c0zx 242 19 as as IN cord-008426-ktn8c0zx 242 20 distinct distinct JJ cord-008426-ktn8c0zx 242 21 viruses virus NNS cord-008426-ktn8c0zx 242 22 but but CC cord-008426-ktn8c0zx 242 23 on on IN cord-008426-ktn8c0zx 242 24 coat coat NN cord-008426-ktn8c0zx 242 25 protein protein NN cord-008426-ktn8c0zx 242 26 sequence sequence NN cord-008426-ktn8c0zx 242 27 they -PRON- PRP cord-008426-ktn8c0zx 242 28 would would MD cord-008426-ktn8c0zx 242 29 probably probably RB cord-008426-ktn8c0zx 242 30 be be VB cord-008426-ktn8c0zx 242 31 considered consider VBN cord-008426-ktn8c0zx 242 32 as as IN cord-008426-ktn8c0zx 242 33 strains strain NNS cord-008426-ktn8c0zx 242 34 . . . cord-008426-ktn8c0zx 243 1 One one CD cord-008426-ktn8c0zx 243 2 of of IN cord-008426-ktn8c0zx 243 3 the the DT cord-008426-ktn8c0zx 243 4 main main JJ cord-008426-ktn8c0zx 243 5 functions function NNS cord-008426-ktn8c0zx 243 6 of of IN cord-008426-ktn8c0zx 243 7 classification classification NN cord-008426-ktn8c0zx 243 8 is be VBZ cord-008426-ktn8c0zx 243 9 communication communication NN cord-008426-ktn8c0zx 243 10 and and CC cord-008426-ktn8c0zx 243 11 entities entity NNS cord-008426-ktn8c0zx 243 12 distinguished distinguish VBN cord-008426-ktn8c0zx 243 13 as as IN cord-008426-ktn8c0zx 243 14 distinct distinct JJ cord-008426-ktn8c0zx 243 15 viruses virus NNS cord-008426-ktn8c0zx 243 16 indicate indicate VBP cord-008426-ktn8c0zx 243 17 that that IN cord-008426-ktn8c0zx 243 18 the the DT cord-008426-ktn8c0zx 243 19 differences difference NNS cord-008426-ktn8c0zx 243 20 are be VBP cord-008426-ktn8c0zx 243 21 distinct distinct JJ cord-008426-ktn8c0zx 243 22 . . . cord-008426-ktn8c0zx 244 1 The the DT cord-008426-ktn8c0zx 244 2 molecular molecular JJ cord-008426-ktn8c0zx 244 3 differences difference NNS cord-008426-ktn8c0zx 244 4 between between IN cord-008426-ktn8c0zx 244 5 SBMV SBMV NNP cord-008426-ktn8c0zx 244 6 - - HYPH cord-008426-ktn8c0zx 244 7 B B NNP cord-008426-ktn8c0zx 244 8 and and CC cord-008426-ktn8c0zx 244 9 SBMV SBMV NNP cord-008426-ktn8c0zx 244 10 - - HYPH cord-008426-ktn8c0zx 244 11 C C NNP cord-008426-ktn8c0zx 244 12 are be VBP cord-008426-ktn8c0zx 244 13 notable notable JJ cord-008426-ktn8c0zx 244 14 and and CC cord-008426-ktn8c0zx 244 15 indicate indicate VBP cord-008426-ktn8c0zx 244 16 that that IN cord-008426-ktn8c0zx 244 17 there there EX cord-008426-ktn8c0zx 244 18 might may MD cord-008426-ktn8c0zx 244 19 be be VB cord-008426-ktn8c0zx 244 20 significant significant JJ cord-008426-ktn8c0zx 244 21 functional functional JJ cord-008426-ktn8c0zx 244 22 differences difference NNS cord-008426-ktn8c0zx 244 23 especially especially RB cord-008426-ktn8c0zx 244 24 between between IN cord-008426-ktn8c0zx 244 25 the the DT cord-008426-ktn8c0zx 244 26 ORF ORF NNP cord-008426-ktn8c0zx 244 27 1 1 CD cord-008426-ktn8c0zx 244 28 products product NNS cord-008426-ktn8c0zx 244 29 . . . cord-008426-ktn8c0zx 245 1 Therefore therefore RB cord-008426-ktn8c0zx 245 2 , , , cord-008426-ktn8c0zx 245 3 we -PRON- PRP cord-008426-ktn8c0zx 245 4 suggest suggest VBP cord-008426-ktn8c0zx 245 5 that that DT cord-008426-ktn8c0zx 245 6 consideration consideration NN cord-008426-ktn8c0zx 245 7 should should MD cord-008426-ktn8c0zx 245 8 be be VB cord-008426-ktn8c0zx 245 9 given give VBN cord-008426-ktn8c0zx 245 10 to to IN cord-008426-ktn8c0zx 245 11 separating separate VBG cord-008426-ktn8c0zx 245 12 SBMV SBMV NNP cord-008426-ktn8c0zx 245 13 - - HYPH cord-008426-ktn8c0zx 245 14 B B NNP cord-008426-ktn8c0zx 245 15 and and CC cord-008426-ktn8c0zx 245 16 SBMV SBMV NNP cord-008426-ktn8c0zx 245 17 - - HYPH cord-008426-ktn8c0zx 245 18 C C NNP cord-008426-ktn8c0zx 245 19 as as IN cord-008426-ktn8c0zx 245 20 distinct distinct JJ cord-008426-ktn8c0zx 245 21 viruses virus NNS cord-008426-ktn8c0zx 245 22 . . . cord-008426-ktn8c0zx 246 1 Structure structure NN cord-008426-ktn8c0zx 246 2 of of IN cord-008426-ktn8c0zx 246 3 southern southern JJ cord-008426-ktn8c0zx 246 4 bean bean NN cord-008426-ktn8c0zx 246 5 mosaic mosaic NNP cord-008426-ktn8c0zx 246 6 virus virus NN cord-008426-ktn8c0zx 246 7 at at IN cord-008426-ktn8c0zx 246 8 2.8 2.8 CD cord-008426-ktn8c0zx 246 9 angstrom angstrom NN cord-008426-ktn8c0zx 246 10 resolution resolution NN cord-008426-ktn8c0zx 247 1 The the DT cord-008426-ktn8c0zx 247 2 location location NN cord-008426-ktn8c0zx 247 3 of of IN cord-008426-ktn8c0zx 247 4 calcium calcium NN cord-008426-ktn8c0zx 247 5 ions ion NNS cord-008426-ktn8c0zx 247 6 in in IN cord-008426-ktn8c0zx 247 7 southern southern JJ cord-008426-ktn8c0zx 247 8 bean bean NN cord-008426-ktn8c0zx 247 9 mosaic mosaic NNP cord-008426-ktn8c0zx 247 10 virus virus NN cord-008426-ktn8c0zx 247 11 Structural structural JJ cord-008426-ktn8c0zx 247 12 and and CC cord-008426-ktn8c0zx 247 13 catalytic catalytic JJ cord-008426-ktn8c0zx 247 14 models model NNS cord-008426-ktn8c0zx 247 15 of of IN cord-008426-ktn8c0zx 247 16 trypsin trypsin NN cord-008426-ktn8c0zx 247 17 - - HYPH cord-008426-ktn8c0zx 247 18 like like JJ cord-008426-ktn8c0zx 247 19 viral viral JJ cord-008426-ktn8c0zx 247 20 proteases protease NNS cord-008426-ktn8c0zx 247 21 Direct direct JJ cord-008426-ktn8c0zx 247 22 mapping mapping NN cord-008426-ktn8c0zx 247 23 of of IN cord-008426-ktn8c0zx 247 24 adeno adeno NN cord-008426-ktn8c0zx 247 25 - - HYPH cord-008426-ktn8c0zx 247 26 associated associate VBN cord-008426-ktn8c0zx 247 27 virus virus NN cord-008426-ktn8c0zx 247 28 capsid capsid NN cord-008426-ktn8c0zx 247 29 protein protein NN cord-008426-ktn8c0zx 247 30 B B NNP cord-008426-ktn8c0zx 247 31 and and CC cord-008426-ktn8c0zx 247 32 C C NNP cord-008426-ktn8c0zx 247 33 ; ; : cord-008426-ktn8c0zx 247 34 a a DT cord-008426-ktn8c0zx 247 35 possible possible JJ cord-008426-ktn8c0zx 247 36 AUC AUC NNP cord-008426-ktn8c0zx 247 37 initiation initiation NN cord-008426-ktn8c0zx 247 38 codon codon NN cord-008426-ktn8c0zx 248 1 The the DT cord-008426-ktn8c0zx 248 2 effect effect NN cord-008426-ktn8c0zx 248 3 of of IN cord-008426-ktn8c0zx 248 4 extraction extraction NN cord-008426-ktn8c0zx 248 5 protocol protocol NN cord-008426-ktn8c0zx 248 6 on on IN cord-008426-ktn8c0zx 248 7 the the DT cord-008426-ktn8c0zx 248 8 yield yield NN cord-008426-ktn8c0zx 248 9 , , , cord-008426-ktn8c0zx 248 10 purity purity NN cord-008426-ktn8c0zx 248 11 and and CC cord-008426-ktn8c0zx 248 12 translation translation NN cord-008426-ktn8c0zx 248 13 products product NNS cord-008426-ktn8c0zx 248 14 of of IN cord-008426-ktn8c0zx 248 15 RNA RNA NNP cord-008426-ktn8c0zx 248 16 from from IN cord-008426-ktn8c0zx 248 17 an an DT cord-008426-ktn8c0zx 248 18 isometric isometric JJ cord-008426-ktn8c0zx 248 19 plant plant NN cord-008426-ktn8c0zx 248 20 virus virus NN cord-008426-ktn8c0zx 248 21 Southern southern JJ cord-008426-ktn8c0zx 248 22 bean bean NN cord-008426-ktn8c0zx 248 23 mosaic mosaic NN cord-008426-ktn8c0zx 248 24 virus virus NN cord-008426-ktn8c0zx 248 25 - - HYPH cord-008426-ktn8c0zx 248 26 specific specific JJ cord-008426-ktn8c0zx 248 27 proteins protein NNS cord-008426-ktn8c0zx 248 28 are be VBP cord-008426-ktn8c0zx 248 29 synthesised synthesise VBN cord-008426-ktn8c0zx 248 30 in in IN cord-008426-ktn8c0zx 248 31 an an DT cord-008426-ktn8c0zx 248 32 in in FW cord-008426-ktn8c0zx 248 33 vitro vitro FW cord-008426-ktn8c0zx 248 34 system system NN cord-008426-ktn8c0zx 248 35 supplemented supplement VBN cord-008426-ktn8c0zx 248 36 with with IN cord-008426-ktn8c0zx 248 37 intact intact JJ cord-008426-ktn8c0zx 248 38 , , , cord-008426-ktn8c0zx 248 39 treated treat VBN cord-008426-ktn8c0zx 248 40 virions virion NNS cord-008426-ktn8c0zx 249 1 The the DT cord-008426-ktn8c0zx 249 2 kinetics kinetic NNS cord-008426-ktn8c0zx 249 3 of of IN cord-008426-ktn8c0zx 249 4 swelling swelling NN cord-008426-ktn8c0zx 249 5 of of IN cord-008426-ktn8c0zx 249 6 southern southern JJ cord-008426-ktn8c0zx 249 7 bean bean NN cord-008426-ktn8c0zx 249 8 mosaic mosaic NNP cord-008426-ktn8c0zx 249 9 virus virus NN cord-008426-ktn8c0zx 249 10 , , , cord-008426-ktn8c0zx 249 11 A a DT cord-008426-ktn8c0zx 249 12 study study NN cord-008426-ktn8c0zx 249 13 using use VBG cord-008426-ktn8c0zx 249 14 photon photon NN cord-008426-ktn8c0zx 249 15 correlation correlation NN cord-008426-ktn8c0zx 249 16 spectroscopy spectroscopy NN cord-008426-ktn8c0zx 249 17 Establishing establish VBG cord-008426-ktn8c0zx 249 18 homologies homology NNS cord-008426-ktn8c0zx 249 19 in in IN cord-008426-ktn8c0zx 249 20 protein protein NN cord-008426-ktn8c0zx 249 21 sequences sequence NNS cord-008426-ktn8c0zx 249 22 Resolution Resolution NNP cord-008426-ktn8c0zx 249 23 of of IN cord-008426-ktn8c0zx 249 24 a a DT cord-008426-ktn8c0zx 249 25 common common JJ cord-008426-ktn8c0zx 249 26 RNA RNA NNP cord-008426-ktn8c0zx 249 27 sequencing sequencing NN cord-008426-ktn8c0zx 249 28 abiguity abiguity NNP cord-008426-ktn8c0zx 249 29 byterminal byterminal NNP cord-008426-ktn8c0zx 249 30 deoxynucleotide deoxynucleotide NNP cord-008426-ktn8c0zx 249 31 transferase transferase NNP cord-008426-ktn8c0zx 249 32 A a DT cord-008426-ktn8c0zx 249 33 comprehensive comprehensive JJ cord-008426-ktn8c0zx 249 34 set set NN cord-008426-ktn8c0zx 249 35 of of IN cord-008426-ktn8c0zx 249 36 sequence sequence NN cord-008426-ktn8c0zx 249 37 analysis analysis NN cord-008426-ktn8c0zx 249 38 programs program NNS cord-008426-ktn8c0zx 249 39 for for IN cord-008426-ktn8c0zx 249 40 the the DT cord-008426-ktn8c0zx 249 41 VAX VAX NNP cord-008426-ktn8c0zx 249 42 Possibilities Possibilities NNP cord-008426-ktn8c0zx 249 43 for for IN cord-008426-ktn8c0zx 249 44 inter inter JJ cord-008426-ktn8c0zx 249 45 - - JJ cord-008426-ktn8c0zx 249 46 and and CC cord-008426-ktn8c0zx 249 47 intracellular intracellular JJ cord-008426-ktn8c0zx 249 48 translocation translocation NN cord-008426-ktn8c0zx 249 49 of of IN cord-008426-ktn8c0zx 249 50 some some DT cord-008426-ktn8c0zx 249 51 icosahedral icosahedral JJ cord-008426-ktn8c0zx 249 52 plant plant NN cord-008426-ktn8c0zx 249 53 viruses virus NNS cord-008426-ktn8c0zx 249 54 Nuclear nuclear JJ cord-008426-ktn8c0zx 249 55 targetting targetting NN cord-008426-ktn8c0zx 249 56 sequence- sequence- XX cord-008426-ktn8c0zx 250 1 A a DT cord-008426-ktn8c0zx 250 2 consensus consensus NN cord-008426-ktn8c0zx 250 3 Evolution evolution NN cord-008426-ktn8c0zx 250 4 of of IN cord-008426-ktn8c0zx 250 5 positive positive JJ cord-008426-ktn8c0zx 250 6 - - HYPH cord-008426-ktn8c0zx 250 7 strand strand NN cord-008426-ktn8c0zx 250 8 RNA RNA NNP cord-008426-ktn8c0zx 250 9 viruses virus NNS cord-008426-ktn8c0zx 250 10 Assembly assembly NN cord-008426-ktn8c0zx 250 11 and and CC cord-008426-ktn8c0zx 250 12 crystallization crystallization NN cord-008426-ktn8c0zx 250 13 of of IN cord-008426-ktn8c0zx 250 14 a a DT cord-008426-ktn8c0zx 250 15 T t NN cord-008426-ktn8c0zx 250 16 = = SYM cord-008426-ktn8c0zx 250 17 1 1 CD cord-008426-ktn8c0zx 250 18 icosahedral icosahedral JJ cord-008426-ktn8c0zx 250 19 pargcle pargcle NNP cord-008426-ktn8c0zx 250 20 from from IN cord-008426-ktn8c0zx 250 21 trypsanized trypsanized NNP cord-008426-ktn8c0zx 250 22 southern southern JJ cord-008426-ktn8c0zx 250 23 bean bean NNP cord-008426-ktn8c0zx 250 24 mosaic mosaic NNP cord-008426-ktn8c0zx 250 25 virus virus NNP cord-008426-ktn8c0zx 250 26 coat coat NN cord-008426-ktn8c0zx 250 27 protein protein NNP cord-008426-ktn8c0zx 251 1 The the DT cord-008426-ktn8c0zx 251 2 use use NN cord-008426-ktn8c0zx 251 3 of of IN cord-008426-ktn8c0zx 251 4 the the DT cord-008426-ktn8c0zx 251 5 3 3 CD cord-008426-ktn8c0zx 251 6 ' ' `` cord-008426-ktn8c0zx 251 7 non non JJ cord-008426-ktn8c0zx 251 8 - - JJ cord-008426-ktn8c0zx 251 9 coding coding JJ cord-008426-ktn8c0zx 251 10 sequence sequence NN cord-008426-ktn8c0zx 251 11 in in IN cord-008426-ktn8c0zx 251 12 the the DT cord-008426-ktn8c0zx 251 13 taxonomy taxonomy NN cord-008426-ktn8c0zx 251 14 of of IN cord-008426-ktn8c0zx 251 15 potyviruses= potyviruses= NNP cord-008426-ktn8c0zx 251 16 Application Application NNP cord-008426-ktn8c0zx 251 17 to to TO cord-008426-ktn8c0zx 251 18 watermelon watermelon VB cord-008426-ktn8c0zx 251 19 mosaic mosaic JJ cord-008426-ktn8c0zx 251 20 virus virus NN cord-008426-ktn8c0zx 251 21 and and CC cord-008426-ktn8c0zx 251 22 soyabean soyabean NNP cord-008426-ktn8c0zx 251 23 mosaic mosaic NNP cord-008426-ktn8c0zx 251 24 virus virus NN cord-008426-ktn8c0zx 251 25 - - : cord-008426-ktn8c0zx 251 26 N N NNP cord-008426-ktn8c0zx 251 27 Chemical Chemical NNP cord-008426-ktn8c0zx 251 28 properties property NNS cord-008426-ktn8c0zx 251 29 of of IN cord-008426-ktn8c0zx 251 30 three three CD cord-008426-ktn8c0zx 251 31 strains strain NNS cord-008426-ktn8c0zx 251 32 of of IN cord-008426-ktn8c0zx 251 33 southern southern JJ cord-008426-ktn8c0zx 251 34 bean bean NN cord-008426-ktn8c0zx 251 35 mosaic mosaic NNP cord-008426-ktn8c0zx 251 36 virus virus NN cord-008426-ktn8c0zx 251 37 Southern southern JJ cord-008426-ktn8c0zx 251 38 bean bean NN cord-008426-ktn8c0zx 251 39 mosaic mosaic NN cord-008426-ktn8c0zx 251 40 virus virus NN cord-008426-ktn8c0zx 251 41 has have VBZ cord-008426-ktn8c0zx 251 42 a a DT cord-008426-ktn8c0zx 251 43 5'-linked 5'-linked CD cord-008426-ktn8c0zx 251 44 protein protein NN cord-008426-ktn8c0zx 251 45 but but CC cord-008426-ktn8c0zx 251 46 lacks lack VBZ cord-008426-ktn8c0zx 251 47 3 3 CD cord-008426-ktn8c0zx 251 48 ' ' '' cord-008426-ktn8c0zx 251 49 terminal terminal JJ cord-008426-ktn8c0zx 251 50 poly(A poly(A NNP cord-008426-ktn8c0zx 251 51 ) ) -RRB- cord-008426-ktn8c0zx 252 1 Characterization characterization NN cord-008426-ktn8c0zx 252 2 of of IN cord-008426-ktn8c0zx 252 3 the the DT cord-008426-ktn8c0zx 252 4 coat coat NN cord-008426-ktn8c0zx 252 5 protein protein NN cord-008426-ktn8c0zx 252 6 mRNA mRNA NNP cord-008426-ktn8c0zx 252 7 of of IN cord-008426-ktn8c0zx 252 8 southern southern JJ cord-008426-ktn8c0zx 252 9 bean bean NNP cord-008426-ktn8c0zx 252 10 mosaic mosaic NNP cord-008426-ktn8c0zx 252 11 virus virus NN cord-008426-ktn8c0zx 252 12 and and CC cord-008426-ktn8c0zx 252 13 its -PRON- PRP$ cord-008426-ktn8c0zx 252 14 relationship relationship NN cord-008426-ktn8c0zx 252 15 to to IN cord-008426-ktn8c0zx 252 16 the the DT cord-008426-ktn8c0zx 252 17 genomic genomic JJ cord-008426-ktn8c0zx 252 18 RNA RNA NNP cord-008426-ktn8c0zx 252 19 Viral viral JJ cord-008426-ktn8c0zx 252 20 proteins protein NNS cord-008426-ktn8c0zx 252 21 containing contain VBG cord-008426-ktn8c0zx 252 22 the the DT cord-008426-ktn8c0zx 252 23 purine purine JJ cord-008426-ktn8c0zx 252 24 NTP NTP NNP cord-008426-ktn8c0zx 252 25 - - HYPH cord-008426-ktn8c0zx 252 26 binding bind VBG cord-008426-ktn8c0zx 252 27 sequence sequence NN cord-008426-ktn8c0zx 252 28 pattern pattern NN cord-008426-ktn8c0zx 252 29 Sobemovirus Sobemovirus NNP cord-008426-ktn8c0zx 252 30 genome genome NN cord-008426-ktn8c0zx 252 31 appears appear VBZ cord-008426-ktn8c0zx 252 32 to to TO cord-008426-ktn8c0zx 252 33 encode encode VB cord-008426-ktn8c0zx 252 34 a a DT cord-008426-ktn8c0zx 252 35 serine serine NN cord-008426-ktn8c0zx 252 36 protease protease NN cord-008426-ktn8c0zx 252 37 related relate VBN cord-008426-ktn8c0zx 252 38 to to IN cord-008426-ktn8c0zx 252 39 cysteine cysteine NN cord-008426-ktn8c0zx 252 40 proteases protease NNS cord-008426-ktn8c0zx 252 41 of of IN cord-008426-ktn8c0zx 252 42 picornoviruses picornoviruse NNS cord-008426-ktn8c0zx 253 1 Efficient efficient JJ cord-008426-ktn8c0zx 253 2 initiation initiation NN cord-008426-ktn8c0zx 253 3 of of IN cord-008426-ktn8c0zx 253 4 translation translation NN cord-008426-ktn8c0zx 253 5 at at IN cord-008426-ktn8c0zx 253 6 non non JJ cord-008426-ktn8c0zx 253 7 - - JJ cord-008426-ktn8c0zx 253 8 AUG AUG NNP cord-008426-ktn8c0zx 253 9 triplets triplet NNS cord-008426-ktn8c0zx 253 10 in in IN cord-008426-ktn8c0zx 253 11 plant plant NN cord-008426-ktn8c0zx 253 12 cells cell NNS cord-008426-ktn8c0zx 254 1 The the DT cord-008426-ktn8c0zx 254 2 relationship relationship NN cord-008426-ktn8c0zx 254 3 of of IN cord-008426-ktn8c0zx 254 4 severe severe JJ cord-008426-ktn8c0zx 254 5 bean bean NN cord-008426-ktn8c0zx 254 6 mosaic mosaic NN cord-008426-ktn8c0zx 254 7 from from IN cord-008426-ktn8c0zx 254 8 Mexico Mexico NNP cord-008426-ktn8c0zx 254 9 to to IN cord-008426-ktn8c0zx 254 10 southern southern JJ cord-008426-ktn8c0zx 254 11 bean bean NN cord-008426-ktn8c0zx 254 12 mosaic mosaic NNP cord-008426-ktn8c0zx 254 13 virus virus NN cord-008426-ktn8c0zx 254 14 and and CC cord-008426-ktn8c0zx 254 15 its -PRON- PRP$ cord-008426-ktn8c0zx 254 16 related related JJ cord-008426-ktn8c0zx 254 17 strain strain NN cord-008426-ktn8c0zx 254 18 from from IN cord-008426-ktn8c0zx 254 19 cowpea cowpea NNP cord-008426-ktn8c0zx 255 1 A a DT cord-008426-ktn8c0zx 255 2 simple simple JJ cord-008426-ktn8c0zx 255 3 and and CC cord-008426-ktn8c0zx 255 4 effective effective JJ cord-008426-ktn8c0zx 255 5 way way NN cord-008426-ktn8c0zx 255 6 for for IN cord-008426-ktn8c0zx 255 7 generating generate VBG cord-008426-ktn8c0zx 255 8 cDNA cdna NN cord-008426-ktn8c0zx 255 9 libraries library NNS cord-008426-ktn8c0zx 255 10 Evolutionary evolutionary JJ cord-008426-ktn8c0zx 255 11 relationships relationship NNS cord-008426-ktn8c0zx 255 12 between between IN cord-008426-ktn8c0zx 255 13 luteoviruses luteoviruse NNS cord-008426-ktn8c0zx 255 14 and and CC cord-008426-ktn8c0zx 255 15 other other JJ cord-008426-ktn8c0zx 255 16 plant plant NN cord-008426-ktn8c0zx 256 1 RNA RNA NNP cord-008426-ktn8c0zx 256 2 viruses virus NNS cord-008426-ktn8c0zx 257 1 Amino amino NN cord-008426-ktn8c0zx 257 2 acid acid NN cord-008426-ktn8c0zx 257 3 sequence sequence NN cord-008426-ktn8c0zx 257 4 of of IN cord-008426-ktn8c0zx 257 5 southern southern JJ cord-008426-ktn8c0zx 257 6 bean bean NNP cord-008426-ktn8c0zx 257 7 mosaic mosaic NNP cord-008426-ktn8c0zx 257 8 virus virus NNP cord-008426-ktn8c0zx 257 9 coat coat NN cord-008426-ktn8c0zx 257 10 protein protein NNP cord-008426-ktn8c0zx 257 11 and and CC cord-008426-ktn8c0zx 257 12 its -PRON- PRP$ cord-008426-ktn8c0zx 257 13 relation relation NN cord-008426-ktn8c0zx 257 14 to to IN cord-008426-ktn8c0zx 257 15 the the DT cord-008426-ktn8c0zx 257 16 three three CD cord-008426-ktn8c0zx 257 17 dimensional dimensional JJ cord-008426-ktn8c0zx 257 18 structure structure NN cord-008426-ktn8c0zx 257 19 of of IN cord-008426-ktn8c0zx 257 20 the the DT cord-008426-ktn8c0zx 257 21 virus virus NN cord-008426-ktn8c0zx 257 22 Stabilizing stabilize VBG cord-008426-ktn8c0zx 257 23 effect effect NN cord-008426-ktn8c0zx 257 24 of of IN cord-008426-ktn8c0zx 257 25 divalent divalent JJ cord-008426-ktn8c0zx 257 26 metal metal NN cord-008426-ktn8c0zx 257 27 ions ion NNS cord-008426-ktn8c0zx 257 28 on on IN cord-008426-ktn8c0zx 257 29 virions virion NNS cord-008426-ktn8c0zx 257 30 of of IN cord-008426-ktn8c0zx 257 31 southern southern JJ cord-008426-ktn8c0zx 257 32 bean bean NN cord-008426-ktn8c0zx 257 33 mosaic mosaic NNP cord-008426-ktn8c0zx 257 34 virus virus NN cord-008426-ktn8c0zx 258 1 The the DT cord-008426-ktn8c0zx 258 2 stabilization stabilization NN cord-008426-ktn8c0zx 258 3 of of IN cord-008426-ktn8c0zx 258 4 the the DT cord-008426-ktn8c0zx 258 5 particles particle NNS cord-008426-ktn8c0zx 258 6 of of IN cord-008426-ktn8c0zx 258 7 turnip turnip NN cord-008426-ktn8c0zx 258 8 rosette rosette NN cord-008426-ktn8c0zx 258 9 virus virus NN cord-008426-ktn8c0zx 258 10 and and CC cord-008426-ktn8c0zx 258 11 of of IN cord-008426-ktn8c0zx 258 12 other other JJ cord-008426-ktn8c0zx 258 13 members member NNS cord-008426-ktn8c0zx 258 14 of of IN cord-008426-ktn8c0zx 258 15 the the DT cord-008426-ktn8c0zx 258 16 southern southern JJ cord-008426-ktn8c0zx 258 17 bean bean NNP cord-008426-ktn8c0zx 258 18 mosaic mosaic NNP cord-008426-ktn8c0zx 258 19 virus virus NN cord-008426-ktn8c0zx 258 20 group group NNP cord-008426-ktn8c0zx 259 1 The the DT cord-008426-ktn8c0zx 259 2 stabilization stabilization NN cord-008426-ktn8c0zx 259 3 of of IN cord-008426-ktn8c0zx 259 4 the the DT cord-008426-ktn8c0zx 259 5 particles particle NNS cord-008426-ktn8c0zx 259 6 of of IN cord-008426-ktn8c0zx 259 7 turnip turnip NN cord-008426-ktn8c0zx 259 8 rosette rosette NN cord-008426-ktn8c0zx 259 9 virus virus NN cord-008426-ktn8c0zx 259 10 . . . cord-008426-ktn8c0zx 260 1 Ith Ith NNP cord-008426-ktn8c0zx 260 2 Divalent Divalent NNP cord-008426-ktn8c0zx 260 3 cations cation NNS cord-008426-ktn8c0zx 260 4 Purification purification NN cord-008426-ktn8c0zx 260 5 , , , cord-008426-ktn8c0zx 260 6 biophysical biophysical JJ cord-008426-ktn8c0zx 260 7 and and CC cord-008426-ktn8c0zx 260 8 biochemical biochemical JJ cord-008426-ktn8c0zx 260 9 characterisation characterisation NN cord-008426-ktn8c0zx 260 10 of of IN cord-008426-ktn8c0zx 260 11 viruses virus NNS cord-008426-ktn8c0zx 260 12 with with IN cord-008426-ktn8c0zx 260 13 special special JJ cord-008426-ktn8c0zx 260 14 reference reference NN cord-008426-ktn8c0zx 261 1 to to TO cord-008426-ktn8c0zx 261 2 plant plant VB cord-008426-ktn8c0zx 261 3 viruses virus NNS cord-008426-ktn8c0zx 261 4 Southern southern JJ cord-008426-ktn8c0zx 261 5 bean bean NN cord-008426-ktn8c0zx 261 6 mosaic mosaic NN cord-008426-ktn8c0zx 261 7 virus virus NN cord-008426-ktn8c0zx 262 1 The the DT cord-008426-ktn8c0zx 262 2 sequence sequence NN cord-008426-ktn8c0zx 262 3 of of IN cord-008426-ktn8c0zx 262 4 carnation carnation NN cord-008426-ktn8c0zx 262 5 etched etch VBD cord-008426-ktn8c0zx 262 6 ring ring NN cord-008426-ktn8c0zx 262 7 virus virus NN cord-008426-ktn8c0zx 262 8 DNA dna NN cord-008426-ktn8c0zx 262 9 , , , cord-008426-ktn8c0zx 262 10 Comparison comparison NN cord-008426-ktn8c0zx 262 11 with with IN cord-008426-ktn8c0zx 262 12 cauliflower cauliflower NN cord-008426-ktn8c0zx 262 13 mosaic mosaic JJ cord-008426-ktn8c0zx 262 14 virus virus NN cord-008426-ktn8c0zx 262 15 and and CC cord-008426-ktn8c0zx 262 16 retroviruses retrovirus NNS cord-008426-ktn8c0zx 263 1 The the DT cord-008426-ktn8c0zx 263 2 structure structure NN cord-008426-ktn8c0zx 263 3 of of IN cord-008426-ktn8c0zx 263 4 southern southern JJ cord-008426-ktn8c0zx 263 5 bean bean NN cord-008426-ktn8c0zx 263 6 mosaic mosaic NNP cord-008426-ktn8c0zx 263 7 virus virus NN cord-008426-ktn8c0zx 263 8 at at IN cord-008426-ktn8c0zx 263 9 2.8 2.8 CD cord-008426-ktn8c0zx 263 10 angstrom angstrom NN cord-008426-ktn8c0zx 263 11 resolution resolution NN cord-008426-ktn8c0zx 263 12 Nucleotide nucleotide JJ cord-008426-ktn8c0zx 263 13 sequences sequence NNS cord-008426-ktn8c0zx 263 14 of of IN cord-008426-ktn8c0zx 263 15 an an DT cord-008426-ktn8c0zx 263 16 Australian australian JJ cord-008426-ktn8c0zx 263 17 and and CC cord-008426-ktn8c0zx 263 18 a a DT cord-008426-ktn8c0zx 263 19 Canadian canadian JJ cord-008426-ktn8c0zx 263 20 isolate isolate NN cord-008426-ktn8c0zx 263 21 of of IN cord-008426-ktn8c0zx 263 22 potato potato NN cord-008426-ktn8c0zx 263 23 leafroll leafroll NNP cord-008426-ktn8c0zx 263 24 luteovirus luteovirus NNP cord-008426-ktn8c0zx 263 25 and and CC cord-008426-ktn8c0zx 263 26 their -PRON- PRP$ cord-008426-ktn8c0zx 263 27 relationships relationship NNS cord-008426-ktn8c0zx 263 28 with with IN cord-008426-ktn8c0zx 263 29 two two CD cord-008426-ktn8c0zx 263 30 European european JJ cord-008426-ktn8c0zx 263 31 isolates isolate NNS cord-008426-ktn8c0zx 263 32 The the DT cord-008426-ktn8c0zx 263 33 phylogeny phylogeny NN cord-008426-ktn8c0zx 263 34 of of IN cord-008426-ktn8c0zx 263 35 RNA rna NN cord-008426-ktn8c0zx 263 36 - - HYPH cord-008426-ktn8c0zx 263 37 dependent dependent JJ cord-008426-ktn8c0zx 263 38 RNA RNA NNP cord-008426-ktn8c0zx 263 39 polymerases polymerase NNS cord-008426-ktn8c0zx 263 40 of of IN cord-008426-ktn8c0zx 263 41 positive positive JJ cord-008426-ktn8c0zx 263 42 - - HYPH cord-008426-ktn8c0zx 263 43 strand strand NN cord-008426-ktn8c0zx 263 44 RNA RNA NNP cord-008426-ktn8c0zx 263 45 viruses virus NNS cord-008426-ktn8c0zx 263 46 Evolution evolution NN cord-008426-ktn8c0zx 263 47 and and CC cord-008426-ktn8c0zx 263 48 taxonomy taxonomy NN cord-008426-ktn8c0zx 263 49 of of IN cord-008426-ktn8c0zx 263 50 positive positive JJ cord-008426-ktn8c0zx 263 51 - - HYPH cord-008426-ktn8c0zx 263 52 strand strand NN cord-008426-ktn8c0zx 263 53 RNA RNA NNP cord-008426-ktn8c0zx 263 54 viruses= viruses= NN cord-008426-ktn8c0zx 263 55 implications implication NNS cord-008426-ktn8c0zx 263 56 of of IN cord-008426-ktn8c0zx 263 57 comparative comparative JJ cord-008426-ktn8c0zx 263 58 analysis analysis NN cord-008426-ktn8c0zx 263 59 of of IN cord-008426-ktn8c0zx 263 60 amino amino NN cord-008426-ktn8c0zx 263 61 acid acid NN cord-008426-ktn8c0zx 263 62 sequences sequence NNS cord-008426-ktn8c0zx 264 1 The the DT cord-008426-ktn8c0zx 264 2 scanning scanning NN cord-008426-ktn8c0zx 264 3 model model NN cord-008426-ktn8c0zx 264 4 for for IN cord-008426-ktn8c0zx 264 5 translation= translation= NNP cord-008426-ktn8c0zx 264 6 An an DT cord-008426-ktn8c0zx 264 7 update update NN cord-008426-ktn8c0zx 264 8 A a DT cord-008426-ktn8c0zx 264 9 neutron neutron NN cord-008426-ktn8c0zx 264 10 scattering scattering NN cord-008426-ktn8c0zx 264 11 study study NN cord-008426-ktn8c0zx 264 12 of of IN cord-008426-ktn8c0zx 264 13 the the DT cord-008426-ktn8c0zx 264 14 structure structure NN cord-008426-ktn8c0zx 264 15 of of IN cord-008426-ktn8c0zx 264 16 compact compact JJ cord-008426-ktn8c0zx 264 17 and and CC cord-008426-ktn8c0zx 264 18 swollen swollen JJ cord-008426-ktn8c0zx 264 19 forms form NNS cord-008426-ktn8c0zx 264 20 of of IN cord-008426-ktn8c0zx 264 21 southern southern JJ cord-008426-ktn8c0zx 264 22 bean bean NN cord-008426-ktn8c0zx 264 23 mosaic mosaic NNP cord-008426-ktn8c0zx 264 24 virus virus NN cord-008426-ktn8c0zx 265 1 A a DT cord-008426-ktn8c0zx 265 2 new new JJ cord-008426-ktn8c0zx 265 3 cowpea cowpea NN cord-008426-ktn8c0zx 265 4 strain strain NN cord-008426-ktn8c0zx 265 5 of of IN cord-008426-ktn8c0zx 265 6 southern southern JJ cord-008426-ktn8c0zx 265 7 bean bean NN cord-008426-ktn8c0zx 265 8 mosaic mosaic NN cord-008426-ktn8c0zx 265 9 virus virus NN cord-008426-ktn8c0zx 265 10 from from IN cord-008426-ktn8c0zx 265 11 Ghana Ghana NNP cord-008426-ktn8c0zx 265 12 Selection Selection NNP cord-008426-ktn8c0zx 265 13 of of IN cord-008426-ktn8c0zx 265 14 AUG AUG NNP cord-008426-ktn8c0zx 265 15 initiation initiation NN cord-008426-ktn8c0zx 265 16 codons codon NNS cord-008426-ktn8c0zx 265 17 differs differ VBZ cord-008426-ktn8c0zx 265 18 in in IN cord-008426-ktn8c0zx 265 19 plants plant NNS cord-008426-ktn8c0zx 265 20 and and CC cord-008426-ktn8c0zx 265 21 animals animal NNS cord-008426-ktn8c0zx 265 22 A'comparative a'comparative CD cord-008426-ktn8c0zx 265 23 study study NN cord-008426-ktn8c0zx 265 24 of of IN cord-008426-ktn8c0zx 265 25 the the DT cord-008426-ktn8c0zx 265 26 cowpea cowpea NNP cord-008426-ktn8c0zx 265 27 and and CC cord-008426-ktn8c0zx 265 28 bean bean NN cord-008426-ktn8c0zx 265 29 strains strain NNS cord-008426-ktn8c0zx 265 30 of of IN cord-008426-ktn8c0zx 265 31 southern southern JJ cord-008426-ktn8c0zx 265 32 bean bean NN cord-008426-ktn8c0zx 265 33 mosaic mosaic NNP cord-008426-ktn8c0zx 265 34 virus virus NN cord-008426-ktn8c0zx 265 35 Nucleotide nucleotide JJ cord-008426-ktn8c0zx 265 36 sequence sequence NN cord-008426-ktn8c0zx 265 37 of of IN cord-008426-ktn8c0zx 265 38 potato potato NN cord-008426-ktn8c0zx 265 39 leafroll leafroll NNP cord-008426-ktn8c0zx 265 40 luteovirus luteovirus NNP cord-008426-ktn8c0zx 266 1 RNA RNA NNP cord-008426-ktn8c0zx 266 2 Improved Improved NNP cord-008426-ktn8c0zx 266 3 double double JJ cord-008426-ktn8c0zx 266 4 stranded strand VBN cord-008426-ktn8c0zx 266 5 DNA dna NN cord-008426-ktn8c0zx 266 6 sequencing sequencing NN cord-008426-ktn8c0zx 266 7 using use VBG cord-008426-ktn8c0zx 266 8 the the DT cord-008426-ktn8c0zx 266 9 linear linear JJ cord-008426-ktn8c0zx 266 10 polymerase polymerase NN cord-008426-ktn8c0zx 266 11 chain chain NN cord-008426-ktn8c0zx 266 12 reaction reaction NN cord-008426-ktn8c0zx 266 13 SOMAP SOMAP NNP cord-008426-ktn8c0zx 266 14 , , , cord-008426-ktn8c0zx 266 15 a a DT cord-008426-ktn8c0zx 266 16 novel novel JJ cord-008426-ktn8c0zx 266 17 approach approach NN cord-008426-ktn8c0zx 266 18 to to IN cord-008426-ktn8c0zx 266 19 multiple multiple JJ cord-008426-ktn8c0zx 266 20 sequence sequence NN cord-008426-ktn8c0zx 266 21 alignment alignment NN cord-008426-ktn8c0zx 266 22 Identification identification NN cord-008426-ktn8c0zx 266 23 of of IN cord-008426-ktn8c0zx 266 24 four four CD cord-008426-ktn8c0zx 266 25 conserved conserved JJ cord-008426-ktn8c0zx 266 26 motifs motif NNS cord-008426-ktn8c0zx 266 27 among among IN cord-008426-ktn8c0zx 266 28 the the DT cord-008426-ktn8c0zx 266 29 RNA rna NN cord-008426-ktn8c0zx 266 30 - - HYPH cord-008426-ktn8c0zx 266 31 dependent dependent JJ cord-008426-ktn8c0zx 266 32 polymerase polymerase NN cord-008426-ktn8c0zx 266 33 encoding encode VBG cord-008426-ktn8c0zx 266 34 elements element NNS cord-008426-ktn8c0zx 266 35 CUG CUG NNP cord-008426-ktn8c0zx 266 36 initiation initiation NN cord-008426-ktn8c0zx 266 37 codon codon NN cord-008426-ktn8c0zx 266 38 used use VBN cord-008426-ktn8c0zx 266 39 for for IN cord-008426-ktn8c0zx 266 40 the the DT cord-008426-ktn8c0zx 266 41 synthesis synthesis NN cord-008426-ktn8c0zx 266 42 of of IN cord-008426-ktn8c0zx 266 43 cell cell NN cord-008426-ktn8c0zx 266 44 surface surface NN cord-008426-ktn8c0zx 266 45 antigen antigen NN cord-008426-ktn8c0zx 266 46 coded code VBN cord-008426-ktn8c0zx 266 47 by by IN cord-008426-ktn8c0zx 266 48 the the DT cord-008426-ktn8c0zx 266 49 murine murine JJ cord-008426-ktn8c0zx 266 50 leukaemia leukaemia NN cord-008426-ktn8c0zx 266 51 virus virus NN cord-008426-ktn8c0zx 267 1 The the DT cord-008426-ktn8c0zx 267 2 structure structure NN cord-008426-ktn8c0zx 267 3 of of IN cord-008426-ktn8c0zx 267 4 southern southern JJ cord-008426-ktn8c0zx 267 5 bean bean NN cord-008426-ktn8c0zx 267 6 mosaic mosaic NNP cord-008426-ktn8c0zx 267 7 virus virus NN cord-008426-ktn8c0zx 267 8 Messenger Messenger NNP cord-008426-ktn8c0zx 267 9 RNA RNA NNP cord-008426-ktn8c0zx 267 10 for for IN cord-008426-ktn8c0zx 267 11 the the DT cord-008426-ktn8c0zx 267 12 coat coat NN cord-008426-ktn8c0zx 267 13 protein protein NN cord-008426-ktn8c0zx 267 14 of of IN cord-008426-ktn8c0zx 267 15 southern southern JJ cord-008426-ktn8c0zx 267 16 bean bean NNP cord-008426-ktn8c0zx 267 17 mosaic mosaic NNP cord-008426-ktn8c0zx 267 18 virus virus NN cord-008426-ktn8c0zx 267 19 Translation Translation NNP cord-008426-ktn8c0zx 267 20 of of IN cord-008426-ktn8c0zx 267 21 southern southern JJ cord-008426-ktn8c0zx 267 22 bean bean NN cord-008426-ktn8c0zx 267 23 mosaic mosaic NNP cord-008426-ktn8c0zx 267 24 virus virus NN cord-008426-ktn8c0zx 267 25 RNA RNA NNP cord-008426-ktn8c0zx 267 26 in in IN cord-008426-ktn8c0zx 267 27 wheat wheat NN cord-008426-ktn8c0zx 267 28 germ germ NN cord-008426-ktn8c0zx 267 29 embryo embryo NN cord-008426-ktn8c0zx 267 30 and and CC cord-008426-ktn8c0zx 267 31 rabbit rabbit NN cord-008426-ktn8c0zx 267 32 reticulocyte reticulocyte NNP cord-008426-ktn8c0zx 267 33 extracts extract VBZ cord-008426-ktn8c0zx 267 34 Molecular Molecular NNP cord-008426-ktn8c0zx 267 35 Cloning Cloning NNP cord-008426-ktn8c0zx 267 36 , , , cord-008426-ktn8c0zx 267 37 A a DT cord-008426-ktn8c0zx 267 38 Laboratory Laboratory NNP cord-008426-ktn8c0zx 267 39 Manual Manual NNP cord-008426-ktn8c0zx 267 40 DNA dna NN cord-008426-ktn8c0zx 267 41 sequencing sequencing NN cord-008426-ktn8c0zx 267 42 with with IN cord-008426-ktn8c0zx 267 43 chain chain NN cord-008426-ktn8c0zx 267 44 - - HYPH cord-008426-ktn8c0zx 267 45 terminating terminate VBG cord-008426-ktn8c0zx 267 46 inhibitors inhibitor NNS cord-008426-ktn8c0zx 267 47 Handbook Handbook NNP cord-008426-ktn8c0zx 267 48 of of IN cord-008426-ktn8c0zx 267 49 Plant Plant NNP cord-008426-ktn8c0zx 267 50 Virus Virus NNP cord-008426-ktn8c0zx 267 51 Infections Infections NNPS cord-008426-ktn8c0zx 267 52 and and CC cord-008426-ktn8c0zx 267 53 Diagnosis Diagnosis NNP cord-008426-ktn8c0zx 267 54 Structural structural JJ cord-008426-ktn8c0zx 267 55 transitions transition NNS cord-008426-ktn8c0zx 267 56 in in IN cord-008426-ktn8c0zx 267 57 southern southern JJ cord-008426-ktn8c0zx 267 58 bean bean NN cord-008426-ktn8c0zx 267 59 mosaic mosaic NNP cord-008426-ktn8c0zx 267 60 virus virus NN cord-008426-ktn8c0zx 267 61 and and CC cord-008426-ktn8c0zx 267 62 their -PRON- PRP$ cord-008426-ktn8c0zx 267 63 correlation correlation NN cord-008426-ktn8c0zx 267 64 with with IN cord-008426-ktn8c0zx 267 65 infectivity infectivity NN cord-008426-ktn8c0zx 267 66 and and CC cord-008426-ktn8c0zx 267 67 ribonuclease ribonuclease NN cord-008426-ktn8c0zx 267 68 activity activity NN cord-008426-ktn8c0zx 268 1 Enzymic enzymic NN cord-008426-ktn8c0zx 268 2 sensitivity sensitivity NN cord-008426-ktn8c0zx 268 3 of of IN cord-008426-ktn8c0zx 268 4 conformationally conformationally RB cord-008426-ktn8c0zx 268 5 altered alter VBN cord-008426-ktn8c0zx 268 6 virions virion NNS cord-008426-ktn8c0zx 268 7 of of IN cord-008426-ktn8c0zx 268 8 southern southern JJ cord-008426-ktn8c0zx 268 9 bean bean NN cord-008426-ktn8c0zx 268 10 mosaic mosaic NNP cord-008426-ktn8c0zx 268 11 virus virus NN cord-008426-ktn8c0zx 268 12 Identity identity NN cord-008426-ktn8c0zx 268 13 of of IN cord-008426-ktn8c0zx 268 14 a a DT cord-008426-ktn8c0zx 268 15 seed seed NN cord-008426-ktn8c0zx 268 16 - - HYPH cord-008426-ktn8c0zx 268 17 borne bear VBN cord-008426-ktn8c0zx 268 18 virus virus NN cord-008426-ktn8c0zx 268 19 of of IN cord-008426-ktn8c0zx 268 20 cowpea cowpea NNP cord-008426-ktn8c0zx 268 21 Southern southern JJ cord-008426-ktn8c0zx 268 22 bean bean NN cord-008426-ktn8c0zx 268 23 mosaic mosaic NN cord-008426-ktn8c0zx 268 24 virus virus NN cord-008426-ktn8c0zx 268 25 RNA RNA NNP cord-008426-ktn8c0zx 268 26 remains remain VBZ cord-008426-ktn8c0zx 268 27 associated associate VBN cord-008426-ktn8c0zx 268 28 with with IN cord-008426-ktn8c0zx 268 29 swollen swollen JJ cord-008426-ktn8c0zx 268 30 virions virion NNS cord-008426-ktn8c0zx 268 31 during during IN cord-008426-ktn8c0zx 268 32 translation translation NN cord-008426-ktn8c0zx 268 33 in in IN cord-008426-ktn8c0zx 268 34 wheat wheat NN cord-008426-ktn8c0zx 268 35 germ germ NN cord-008426-ktn8c0zx 268 36 cell cell NN cord-008426-ktn8c0zx 268 37 - - HYPH cord-008426-ktn8c0zx 268 38 free free JJ cord-008426-ktn8c0zx 268 39 extracts extract NNS cord-008426-ktn8c0zx 268 40 Identification identification NN cord-008426-ktn8c0zx 268 41 and and CC cord-008426-ktn8c0zx 268 42 classification classification NN cord-008426-ktn8c0zx 268 43 of of IN cord-008426-ktn8c0zx 268 44 potyvirus potyvirus NNP cord-008426-ktn8c0zx 268 45 on on IN cord-008426-ktn8c0zx 268 46 the the DT cord-008426-ktn8c0zx 268 47 basis basis NN cord-008426-ktn8c0zx 268 48 of of IN cord-008426-ktn8c0zx 268 49 coat coat NN cord-008426-ktn8c0zx 268 50 protein protein NN cord-008426-ktn8c0zx 268 51 sequence sequence NN cord-008426-ktn8c0zx 268 52 data datum NNS cord-008426-ktn8c0zx 268 53 and and CC cord-008426-ktn8c0zx 268 54 serology serology NN cord-008426-ktn8c0zx 268 55 Refined refined JJ cord-008426-ktn8c0zx 268 56 structure structure NN cord-008426-ktn8c0zx 268 57 of of IN cord-008426-ktn8c0zx 268 58 southern southern JJ cord-008426-ktn8c0zx 268 59 bean bean NN cord-008426-ktn8c0zx 268 60 mosaic mosaic NNP cord-008426-ktn8c0zx 268 61 virus virus NN cord-008426-ktn8c0zx 268 62 at at IN cord-008426-ktn8c0zx 268 63 2.9A 2.9a NN cord-008426-ktn8c0zx 268 64 resolution resolution NN cord-008426-ktn8c0zx 268 65 Coronavirus= Coronavirus= NNP cord-008426-ktn8c0zx 268 66 Structure Structure NNP cord-008426-ktn8c0zx 268 67 and and CC cord-008426-ktn8c0zx 268 68 genome genome NN cord-008426-ktn8c0zx 268 69 expression expression NN cord-008426-ktn8c0zx 269 1 The the DT cord-008426-ktn8c0zx 269 2 amino amino NN cord-008426-ktn8c0zx 269 3 acid acid NN cord-008426-ktn8c0zx 269 4 and and CC cord-008426-ktn8c0zx 269 5 nucleotide nucleotide JJ cord-008426-ktn8c0zx 269 6 composition composition NN cord-008426-ktn8c0zx 269 7 of of IN cord-008426-ktn8c0zx 269 8 the the DT cord-008426-ktn8c0zx 269 9 bean bean NN cord-008426-ktn8c0zx 269 10 and and CC cord-008426-ktn8c0zx 269 11 cowpea cowpea NNP cord-008426-ktn8c0zx 269 12 strains strain NNS cord-008426-ktn8c0zx 269 13 of of IN cord-008426-ktn8c0zx 269 14 southern southern JJ cord-008426-ktn8c0zx 269 15 bean bean NN cord-008426-ktn8c0zx 269 16 mosaic mosaic NNP cord-008426-ktn8c0zx 269 17 virus virus NN cord-008426-ktn8c0zx 269 18 Southern southern JJ cord-008426-ktn8c0zx 269 19 bean bean NN cord-008426-ktn8c0zx 269 20 mosaic mosaic NN cord-008426-ktn8c0zx 269 21 virus virus NN cord-008426-ktn8c0zx 269 22 Comparison comparison NN cord-008426-ktn8c0zx 269 23 of of IN cord-008426-ktn8c0zx 269 24 highly highly RB cord-008426-ktn8c0zx 269 25 basic basic JJ cord-008426-ktn8c0zx 269 26 cyanogen cyanogen NN cord-008426-ktn8c0zx 269 27 bromide bromide NN cord-008426-ktn8c0zx 269 28 peptides peptide NNS cord-008426-ktn8c0zx 269 29 from from IN cord-008426-ktn8c0zx 269 30 strains strain NNS cord-008426-ktn8c0zx 269 31 of of IN cord-008426-ktn8c0zx 269 32 southern southern JJ cord-008426-ktn8c0zx 269 33 bean bean NN cord-008426-ktn8c0zx 269 34 mosaic mosaic NNP cord-008426-ktn8c0zx 269 35 virus virus NN cord-008426-ktn8c0zx 269 36 Intermediates Intermediates NNPS cord-008426-ktn8c0zx 269 37 of of IN cord-008426-ktn8c0zx 269 38 the the DT cord-008426-ktn8c0zx 269 39 assembly assembly NN cord-008426-ktn8c0zx 269 40 and and CC cord-008426-ktn8c0zx 269 41 disassembly disassembly NN cord-008426-ktn8c0zx 269 42 of of IN cord-008426-ktn8c0zx 269 43 southern southern JJ cord-008426-ktn8c0zx 269 44 bean bean NN cord-008426-ktn8c0zx 269 45 mosaic mosaic NN cord-008426-ktn8c0zx 269 46 virus virus NN cord-008426-ktn8c0zx 269 47 Proteinase Proteinase NNP cord-008426-ktn8c0zx 269 48 K K NNP cord-008426-ktn8c0zx 269 49 - - HYPH cord-008426-ktn8c0zx 269 50 sensitive sensitive JJ cord-008426-ktn8c0zx 269 51 factor factor NN cord-008426-ktn8c0zx 269 52 essential essential JJ cord-008426-ktn8c0zx 269 53 for for IN cord-008426-ktn8c0zx 269 54 the the DT cord-008426-ktn8c0zx 269 55 infectivity infectivity NN cord-008426-ktn8c0zx 269 56 of of IN cord-008426-ktn8c0zx 269 57 southern southern JJ cord-008426-ktn8c0zx 269 58 bean bean NN cord-008426-ktn8c0zx 269 59 mosaic mosaic NNP cord-008426-ktn8c0zx 269 60 virus virus NN cord-008426-ktn8c0zx 269 61 Nucleotide Nucleotide NNP cord-008426-ktn8c0zx 269 62 equence equence NN cord-008426-ktn8c0zx 269 63 of of IN cord-008426-ktn8c0zx 269 64 beet beet NN cord-008426-ktn8c0zx 269 65 western western JJ cord-008426-ktn8c0zx 269 66 yellows yellow NNS cord-008426-ktn8c0zx 269 67 virus virus NN cord-008426-ktn8c0zx 269 68 RNA RNA NNP cord-008426-ktn8c0zx 269 69 Sequence Sequence NNP cord-008426-ktn8c0zx 269 70 and and CC cord-008426-ktn8c0zx 269 71 organization organization NN cord-008426-ktn8c0zx 269 72 of of IN cord-008426-ktn8c0zx 269 73 southern southern JJ cord-008426-ktn8c0zx 269 74 bean bean NNP cord-008426-ktn8c0zx 269 75 mosaic mosaic NNP cord-008426-ktn8c0zx 269 76 virus virus NN cord-008426-ktn8c0zx 269 77 genomic genomic JJ cord-008426-ktn8c0zx 269 78 RNA RNA NNP cord-008426-ktn8c0zx 270 1 The the DT cord-008426-ktn8c0zx 270 2 severe severe JJ cord-008426-ktn8c0zx 270 3 bean bean NN cord-008426-ktn8c0zx 270 4 mosaic mosaic NN cord-008426-ktn8c0zx 270 5 virus virus NN cord-008426-ktn8c0zx 271 1 The the DT cord-008426-ktn8c0zx 271 2 5 5 CD cord-008426-ktn8c0zx 271 3 ' ' NN cord-008426-ktn8c0zx 271 4 end end NN cord-008426-ktn8c0zx 271 5 group group NN cord-008426-ktn8c0zx 271 6 of of IN cord-008426-ktn8c0zx 271 7 tobacco tobacco NN cord-008426-ktn8c0zx 271 8 mosaic mosaic NNP cord-008426-ktn8c0zx 271 9 virus virus NN cord-008426-ktn8c0zx 271 10 RNA RNA NNP cord-008426-ktn8c0zx 271 11 is be VBZ cord-008426-ktn8c0zx 271 12 m7G~'pppS'Gp m7g~'ppps'gp ADD cord-008426-ktn8c0zx 271 13 Optimal optimal JJ cord-008426-ktn8c0zx 271 14 computer computer NN cord-008426-ktn8c0zx 271 15 folding folding NN cord-008426-ktn8c0zx 271 16 of of IN cord-008426-ktn8c0zx 271 17 large large JJ cord-008426-ktn8c0zx 271 18 RNA RNA NNP cord-008426-ktn8c0zx 271 19 sequences sequence NNS cord-008426-ktn8c0zx 271 20 using use VBG cord-008426-ktn8c0zx 271 21 thermodynamics thermodynamic NNS cord-008426-ktn8c0zx 271 22 and and CC cord-008426-ktn8c0zx 271 23 auxiliary auxiliary JJ cord-008426-ktn8c0zx 271 24 information information NN