id sid tid token lemma pos cord-330847-a84pcc9z 1 1 key key NN cord-330847-a84pcc9z 1 2 : : : cord-330847-a84pcc9z 1 3 cord-330847-a84pcc9z cord-330847-a84pcc9z NNP cord-330847-a84pcc9z 2 1 authors author NNS cord-330847-a84pcc9z 2 2 : : : cord-330847-a84pcc9z 2 3 Edwards Edwards NNP cord-330847-a84pcc9z 2 4 , , , cord-330847-a84pcc9z 2 5 M. M. NNP cord-330847-a84pcc9z 2 6 C. C. NNP cord-330847-a84pcc9z 2 7 ; ; : cord-330847-a84pcc9z 2 8 Petty Petty NNP cord-330847-a84pcc9z 2 9 , , , cord-330847-a84pcc9z 2 10 I.T.D. I.T.D. NNP cord-330847-a84pcc9z 2 11 ; ; : cord-330847-a84pcc9z 2 12 Jackson Jackson NNP cord-330847-a84pcc9z 2 13 , , , cord-330847-a84pcc9z 2 14 A. A. NNP cord-330847-a84pcc9z 2 15 O. O. NNP cord-330847-a84pcc9z 2 16 title title NN cord-330847-a84pcc9z 2 17 : : : cord-330847-a84pcc9z 2 18 RNA rna NN cord-330847-a84pcc9z 2 19 recombination recombination NN cord-330847-a84pcc9z 2 20 in in IN cord-330847-a84pcc9z 2 21 the the DT cord-330847-a84pcc9z 2 22 genome genome NN cord-330847-a84pcc9z 2 23 of of IN cord-330847-a84pcc9z 2 24 Barley Barley NNP cord-330847-a84pcc9z 2 25 stripe stripe NN cord-330847-a84pcc9z 2 26 mosaic mosaic NN cord-330847-a84pcc9z 2 27 virus virus NN cord-330847-a84pcc9z 2 28 date date NN cord-330847-a84pcc9z 2 29 : : : cord-330847-a84pcc9z 3 1 1992 1992 LS cord-330847-a84pcc9z 3 2 - - SYM cord-330847-a84pcc9z 3 3 07 07 CD cord-330847-a84pcc9z 3 4 - - HYPH cord-330847-a84pcc9z 3 5 31 31 CD cord-330847-a84pcc9z 3 6 journal journal NN cord-330847-a84pcc9z 3 7 : : : cord-330847-a84pcc9z 4 1 Virology virology NN cord-330847-a84pcc9z 4 2 DOI DOI NNP cord-330847-a84pcc9z 4 3 : : : cord-330847-a84pcc9z 4 4 10.1016/0042 10.1016/0042 CD cord-330847-a84pcc9z 4 5 - - HYPH cord-330847-a84pcc9z 4 6 6822(92)90722 6822(92)90722 CD cord-330847-a84pcc9z 4 7 - - HYPH cord-330847-a84pcc9z 4 8 2 2 CD cord-330847-a84pcc9z 5 1 sha sha NNP cord-330847-a84pcc9z 5 2 : : : cord-330847-a84pcc9z 6 1 ec9a51accf3afe859de847c59a0e50bb0be2968e ec9a51accf3afe859de847c59a0e50bb0be2968e UH cord-330847-a84pcc9z 6 2 doc_id doc_id CD cord-330847-a84pcc9z 6 3 : : : cord-330847-a84pcc9z 6 4 330847 330847 CD cord-330847-a84pcc9z 6 5 cord_uid cord_uid NNS cord-330847-a84pcc9z 6 6 : : : cord-330847-a84pcc9z 6 7 a84pcc9z a84pcc9z NNP cord-330847-a84pcc9z 6 8 Abstract Abstract NNP cord-330847-a84pcc9z 6 9 Barley Barley NNP cord-330847-a84pcc9z 6 10 stripe stripe NN cord-330847-a84pcc9z 6 11 mosaic mosaic NN cord-330847-a84pcc9z 6 12 Hordeivirus Hordeivirus NNP cord-330847-a84pcc9z 6 13 ( ( -LRB- cord-330847-a84pcc9z 6 14 BSMV BSMV NNP cord-330847-a84pcc9z 6 15 ) ) -RRB- cord-330847-a84pcc9z 6 16 is be VBZ cord-330847-a84pcc9z 6 17 a a DT cord-330847-a84pcc9z 6 18 positive positive JJ cord-330847-a84pcc9z 6 19 - - HYPH cord-330847-a84pcc9z 6 20 strand strand NN cord-330847-a84pcc9z 6 21 RNA RNA NNP cord-330847-a84pcc9z 6 22 virus virus NN cord-330847-a84pcc9z 6 23 requiring require VBG cord-330847-a84pcc9z 6 24 three three CD cord-330847-a84pcc9z 6 25 single single RB cord-330847-a84pcc9z 6 26 - - HYPH cord-330847-a84pcc9z 6 27 stranded strand VBN cord-330847-a84pcc9z 6 28 RNAs rna NNS cord-330847-a84pcc9z 6 29 ( ( -LRB- cord-330847-a84pcc9z 6 30 α α NNP cord-330847-a84pcc9z 6 31 , , , cord-330847-a84pcc9z 6 32 β β NN cord-330847-a84pcc9z 6 33 , , , cord-330847-a84pcc9z 6 34 and and CC cord-330847-a84pcc9z 6 35 γ γ NN cord-330847-a84pcc9z 6 36 ) ) -RRB- cord-330847-a84pcc9z 6 37 for for IN cord-330847-a84pcc9z 6 38 infectivity infectivity NN cord-330847-a84pcc9z 6 39 . . . cord-330847-a84pcc9z 7 1 A a DT cord-330847-a84pcc9z 7 2 terminal terminal JJ cord-330847-a84pcc9z 7 3 - - HYPH cord-330847-a84pcc9z 7 4 sequence sequence NN cord-330847-a84pcc9z 7 5 - - HYPH cord-330847-a84pcc9z 7 6 dependent dependent JJ cord-330847-a84pcc9z 7 7 cloning cloning NN cord-330847-a84pcc9z 7 8 strategy strategy NN cord-330847-a84pcc9z 7 9 was be VBD cord-330847-a84pcc9z 7 10 used use VBN cord-330847-a84pcc9z 7 11 to to TO cord-330847-a84pcc9z 7 12 clone clone VB cord-330847-a84pcc9z 7 13 the the DT cord-330847-a84pcc9z 7 14 entire entire JJ cord-330847-a84pcc9z 7 15 genome genome NN cord-330847-a84pcc9z 7 16 of of IN cord-330847-a84pcc9z 7 17 the the DT cord-330847-a84pcc9z 7 18 CV17 CV17 NNP cord-330847-a84pcc9z 7 19 strain strain VB cord-330847-a84pcc9z 7 20 . . . cord-330847-a84pcc9z 8 1 Full full JJ cord-330847-a84pcc9z 8 2 - - HYPH cord-330847-a84pcc9z 8 3 length length NN cord-330847-a84pcc9z 8 4 γ γ NN cord-330847-a84pcc9z 8 5 cDNA cdna NN cord-330847-a84pcc9z 8 6 clones clone NNS cord-330847-a84pcc9z 8 7 were be VBD cord-330847-a84pcc9z 8 8 obtained obtain VBN cord-330847-a84pcc9z 8 9 when when WRB cord-330847-a84pcc9z 8 10 oligonucleotides oligonucleotide NNS cord-330847-a84pcc9z 8 11 specific specific JJ cord-330847-a84pcc9z 8 12 for for IN cord-330847-a84pcc9z 8 13 the the DT cord-330847-a84pcc9z 8 14 5′-terminal 5′-terminal CD cord-330847-a84pcc9z 8 15 sequence sequence NN cord-330847-a84pcc9z 8 16 of of IN cord-330847-a84pcc9z 8 17 RNA RNA NNP cord-330847-a84pcc9z 8 18 α α NN cord-330847-a84pcc9z 8 19 were be VBD cord-330847-a84pcc9z 8 20 used use VBN cord-330847-a84pcc9z 8 21 in in IN cord-330847-a84pcc9z 8 22 the the DT cord-330847-a84pcc9z 8 23 cloning cloning NN cord-330847-a84pcc9z 8 24 procedure procedure NN cord-330847-a84pcc9z 8 25 , , , cord-330847-a84pcc9z 8 26 but but CC cord-330847-a84pcc9z 8 27 not not RB cord-330847-a84pcc9z 8 28 when when WRB cord-330847-a84pcc9z 8 29 RNA RNA NNP cord-330847-a84pcc9z 8 30 γ γ NN cord-330847-a84pcc9z 8 31 - - HYPH cord-330847-a84pcc9z 8 32 specific specific JJ cord-330847-a84pcc9z 8 33 oligonucleotides oligonucleotide NNS cord-330847-a84pcc9z 8 34 were be VBD cord-330847-a84pcc9z 8 35 used use VBN cord-330847-a84pcc9z 8 36 . . . cord-330847-a84pcc9z 9 1 Sequence sequence NN cord-330847-a84pcc9z 9 2 analysis analysis NN cord-330847-a84pcc9z 9 3 of of IN cord-330847-a84pcc9z 9 4 six six CD cord-330847-a84pcc9z 9 5 putative putative JJ cord-330847-a84pcc9z 9 6 γ γ NN cord-330847-a84pcc9z 9 7 cDNA cdna NN cord-330847-a84pcc9z 9 8 clones clone NNS cord-330847-a84pcc9z 9 9 revealed reveal VBD cord-330847-a84pcc9z 9 10 that that IN cord-330847-a84pcc9z 9 11 nucleotides nucleotide NNS cord-330847-a84pcc9z 9 12 1–70 1–70 CD cord-330847-a84pcc9z 9 13 possess possess VBP cord-330847-a84pcc9z 9 14 89 89 CD cord-330847-a84pcc9z 9 15 % % NN cord-330847-a84pcc9z 9 16 homology homology NN cord-330847-a84pcc9z 9 17 with with IN cord-330847-a84pcc9z 9 18 the the DT cord-330847-a84pcc9z 9 19 first first JJ cord-330847-a84pcc9z 9 20 70 70 CD cord-330847-a84pcc9z 9 21 nucleotides nucleotide NNS cord-330847-a84pcc9z 9 22 of of IN cord-330847-a84pcc9z 9 23 RNA RNA NNP cord-330847-a84pcc9z 9 24 α α NN cord-330847-a84pcc9z 9 25 . . . cord-330847-a84pcc9z 10 1 This this DT cord-330847-a84pcc9z 10 2 leader leader NN cord-330847-a84pcc9z 10 3 region region NN cord-330847-a84pcc9z 10 4 is be VBZ cord-330847-a84pcc9z 10 5 separated separate VBN cord-330847-a84pcc9z 10 6 from from IN cord-330847-a84pcc9z 10 7 the the DT cord-330847-a84pcc9z 10 8 γ γ NN cord-330847-a84pcc9z 10 9 - - HYPH cord-330847-a84pcc9z 10 10 specific specific JJ cord-330847-a84pcc9z 10 11 coding code VBG cord-330847-a84pcc9z 10 12 region region NN cord-330847-a84pcc9z 10 13 by by IN cord-330847-a84pcc9z 10 14 an an DT cord-330847-a84pcc9z 10 15 eight eight CD cord-330847-a84pcc9z 10 16 - - HYPH cord-330847-a84pcc9z 10 17 base base NN cord-330847-a84pcc9z 10 18 intervening intervene VBG cord-330847-a84pcc9z 10 19 sequence sequence NN cord-330847-a84pcc9z 10 20 common common JJ cord-330847-a84pcc9z 10 21 to to IN cord-330847-a84pcc9z 10 22 both both DT cord-330847-a84pcc9z 10 23 CV17 CV17 NNP cord-330847-a84pcc9z 10 24 RNAs rna NNS cord-330847-a84pcc9z 10 25 α α NN cord-330847-a84pcc9z 10 26 and and CC cord-330847-a84pcc9z 10 27 γ γ NN cord-330847-a84pcc9z 10 28 . . . cord-330847-a84pcc9z 11 1 Northern northern JJ cord-330847-a84pcc9z 11 2 and and CC cord-330847-a84pcc9z 11 3 Southern southern JJ cord-330847-a84pcc9z 11 4 hybridization hybridization NN cord-330847-a84pcc9z 11 5 with with IN cord-330847-a84pcc9z 11 6 oligonucleotide oligonucleotide JJ cord-330847-a84pcc9z 11 7 probes probe NNS cord-330847-a84pcc9z 11 8 specific specific JJ cord-330847-a84pcc9z 11 9 for for IN cord-330847-a84pcc9z 11 10 either either CC cord-330847-a84pcc9z 11 11 α α NN cord-330847-a84pcc9z 11 12 or or CC cord-330847-a84pcc9z 11 13 γ γ NN cord-330847-a84pcc9z 11 14 leader leader NN cord-330847-a84pcc9z 11 15 sequences sequence NNS cord-330847-a84pcc9z 11 16 indicated indicate VBD cord-330847-a84pcc9z 11 17 that that IN cord-330847-a84pcc9z 11 18 CV17 CV17 NNP cord-330847-a84pcc9z 11 19 γ γ XX cord-330847-a84pcc9z 11 20 cDNA cdna NN cord-330847-a84pcc9z 11 21 clones clone NNS cord-330847-a84pcc9z 11 22 are be VBP cord-330847-a84pcc9z 11 23 representative representative JJ cord-330847-a84pcc9z 11 24 of of IN cord-330847-a84pcc9z 11 25 native native JJ cord-330847-a84pcc9z 11 26 CV17 CV17 NNP cord-330847-a84pcc9z 11 27 γ γ NN cord-330847-a84pcc9z 11 28 RNAs rna NNS cord-330847-a84pcc9z 11 29 . . . cord-330847-a84pcc9z 12 1 Furthermore furthermore RB cord-330847-a84pcc9z 12 2 , , , cord-330847-a84pcc9z 12 3 bioassays bioassays NNP cord-330847-a84pcc9z 12 4 indicated indicate VBD cord-330847-a84pcc9z 12 5 that that IN cord-330847-a84pcc9z 12 6 in in IN cord-330847-a84pcc9z 12 7 vitro vitro FW cord-330847-a84pcc9z 12 8 transcripts transcript NNS cord-330847-a84pcc9z 12 9 derived derive VBN cord-330847-a84pcc9z 12 10 from from IN cord-330847-a84pcc9z 12 11 these these DT cord-330847-a84pcc9z 12 12 γ γ NNP cord-330847-a84pcc9z 12 13 cDNA cdna NN cord-330847-a84pcc9z 12 14 clones clone NNS cord-330847-a84pcc9z 12 15 were be VBD cord-330847-a84pcc9z 12 16 infectious infectious JJ cord-330847-a84pcc9z 12 17 when when WRB cord-330847-a84pcc9z 12 18 coinoculated coinoculate VBN cord-330847-a84pcc9z 12 19 with with IN cord-330847-a84pcc9z 12 20 in in FW cord-330847-a84pcc9z 12 21 vitro vitro FW cord-330847-a84pcc9z 12 22 transcripts transcript NNS cord-330847-a84pcc9z 12 23 of of IN cord-330847-a84pcc9z 12 24 full full JJ cord-330847-a84pcc9z 12 25 - - HYPH cord-330847-a84pcc9z 12 26 length length NN cord-330847-a84pcc9z 12 27 α α NN cord-330847-a84pcc9z 12 28 and and CC cord-330847-a84pcc9z 12 29 β β NNP cord-330847-a84pcc9z 12 30 cDNA cDNA NNP cord-330847-a84pcc9z 12 31 clones clone NNS cord-330847-a84pcc9z 12 32 . . . cord-330847-a84pcc9z 13 1 Thus thus RB cord-330847-a84pcc9z 13 2 , , , cord-330847-a84pcc9z 13 3 the the DT cord-330847-a84pcc9z 13 4 evidence evidence NN cord-330847-a84pcc9z 13 5 suggests suggest VBZ cord-330847-a84pcc9z 13 6 that that IN cord-330847-a84pcc9z 13 7 RNA RNA NNP cord-330847-a84pcc9z 13 8 γ γ NN cord-330847-a84pcc9z 13 9 of of IN cord-330847-a84pcc9z 13 10 BSMV BSMV NNP cord-330847-a84pcc9z 13 11 strain strain VBP cord-330847-a84pcc9z 13 12 CV17 CV17 NNP cord-330847-a84pcc9z 13 13 is be VBZ cord-330847-a84pcc9z 13 14 a a DT cord-330847-a84pcc9z 13 15 recombinant recombinant JJ cord-330847-a84pcc9z 13 16 molecule molecule NN cord-330847-a84pcc9z 13 17 which which WDT cord-330847-a84pcc9z 13 18 may may MD cord-330847-a84pcc9z 13 19 have have VB cord-330847-a84pcc9z 13 20 arisen arise VBN cord-330847-a84pcc9z 13 21 as as IN cord-330847-a84pcc9z 13 22 a a DT cord-330847-a84pcc9z 13 23 result result NN cord-330847-a84pcc9z 13 24 of of IN cord-330847-a84pcc9z 13 25 natural natural JJ cord-330847-a84pcc9z 13 26 recombination recombination NN cord-330847-a84pcc9z 13 27 between between IN cord-330847-a84pcc9z 13 28 RNAs rna NNS cord-330847-a84pcc9z 13 29 α α NNP cord-330847-a84pcc9z 13 30 and and CC cord-330847-a84pcc9z 13 31 γ γ NN cord-330847-a84pcc9z 13 32 . . . cord-330847-a84pcc9z 14 1 Barley barley NN cord-330847-a84pcc9z 14 2 stripe stripe NN cord-330847-a84pcc9z 14 3 mosaic mosaic NN cord-330847-a84pcc9z 14 4 virus virus NN cord-330847-a84pcc9z 14 5 ( ( -LRB- cord-330847-a84pcc9z 14 6 BSMV BSMV NNP cord-330847-a84pcc9z 14 7 ) ) -RRB- cord-330847-a84pcc9z 14 8 , , , cord-330847-a84pcc9z 14 9 a a DT cord-330847-a84pcc9z 14 10 Hordeivirus Hordeivirus NNP cord-330847-a84pcc9z 14 11 , , , cord-330847-a84pcc9z 14 12 encodes encode VBZ cord-330847-a84pcc9z 14 13 seven seven CD cord-330847-a84pcc9z 14 14 major major JJ cord-330847-a84pcc9z 14 15 polypeptides polypeptide NNS cord-330847-a84pcc9z 14 16 in in IN cord-330847-a84pcc9z 14 17 a a DT cord-330847-a84pcc9z 14 18 segmented segmented JJ cord-330847-a84pcc9z 14 19 genome genome NN cord-330847-a84pcc9z 14 20 composed compose VBN cord-330847-a84pcc9z 14 21 of of IN cord-330847-a84pcc9z 14 22 three three CD cord-330847-a84pcc9z 14 23 ( ( -LRB- cord-330847-a84pcc9z 14 24 + + CC cord-330847-a84pcc9z 14 25 ) ) -RRB- cord-330847-a84pcc9z 14 26 -sense -sense NN cord-330847-a84pcc9z 14 27 , , , cord-330847-a84pcc9z 14 28 single single RB cord-330847-a84pcc9z 14 29 - - HYPH cord-330847-a84pcc9z 14 30 stranded stranded JJ cord-330847-a84pcc9z 14 31 ( ( -LRB- cord-330847-a84pcc9z 14 32 ss ss NNP cord-330847-a84pcc9z 14 33 ) ) -RRB- cord-330847-a84pcc9z 14 34 RNAs RNAs NNP cord-330847-a84pcc9z 14 35 designated designate VBD cord-330847-a84pcc9z 14 36 ( ( -LRB- cord-330847-a84pcc9z 14 37 Y Y NNP cord-330847-a84pcc9z 14 38 ( ( -LRB- cord-330847-a84pcc9z 14 39 3.8 3.8 CD cord-330847-a84pcc9z 14 40 kb kb NNP cord-330847-a84pcc9z 14 41 ) ) -RRB- cord-330847-a84pcc9z 14 42 , , , cord-330847-a84pcc9z 14 43 p(3.3 p(3.3 DT cord-330847-a84pcc9z 14 44 kb kb NNP cord-330847-a84pcc9z 14 45 ) ) -RRB- cord-330847-a84pcc9z 14 46 , , , cord-330847-a84pcc9z 14 47 and and CC cord-330847-a84pcc9z 14 48 y y NNP cord-330847-a84pcc9z 14 49 ( ( -LRB- cord-330847-a84pcc9z 14 50 3.2 3.2 CD cord-330847-a84pcc9z 14 51 or or CC cord-330847-a84pcc9z 14 52 2.8 2.8 CD cord-330847-a84pcc9z 14 53 kb kb NNS cord-330847-a84pcc9z 14 54 ) ) -RRB- cord-330847-a84pcc9z 14 55 ( ( -LRB- cord-330847-a84pcc9z 14 56 I i NN cord-330847-a84pcc9z 14 57 ) ) -RRB- cord-330847-a84pcc9z 14 58 . . . cord-330847-a84pcc9z 15 1 The the DT cord-330847-a84pcc9z 15 2 length length NN cord-330847-a84pcc9z 15 3 of of IN cord-330847-a84pcc9z 15 4 RNA RNA NNP cord-330847-a84pcc9z 15 5 y y NNP cord-330847-a84pcc9z 15 6 varies vary VBZ cord-330847-a84pcc9z 15 7 with with IN cord-330847-a84pcc9z 15 8 the the DT cord-330847-a84pcc9z 15 9 presence presence NN cord-330847-a84pcc9z 15 10 or or CC cord-330847-a84pcc9z 15 11 absence absence NN cord-330847-a84pcc9z 15 12 of of IN cord-330847-a84pcc9z 15 13 a a DT cord-330847-a84pcc9z 15 14 tandem tandem JJ cord-330847-a84pcc9z 15 15 repeat repeat NN cord-330847-a84pcc9z 15 16 near near IN cord-330847-a84pcc9z 15 17 its -PRON- PRP$ cord-330847-a84pcc9z 15 18 5 5 CD cord-330847-a84pcc9z 15 19 ' ' NN cord-330847-a84pcc9z 15 20 terminus terminus NN cord-330847-a84pcc9z 15 21 . . . cord-330847-a84pcc9z 16 1 RNAs RNAs NNP cord-330847-a84pcc9z 16 2 LY LY NNP cord-330847-a84pcc9z 16 3 and and CC cord-330847-a84pcc9z 16 4 y y NNP cord-330847-a84pcc9z 16 5 are be VBP cord-330847-a84pcc9z 16 6 able able JJ cord-330847-a84pcc9z 16 7 to to TO cord-330847-a84pcc9z 16 8 replicate replicate VB cord-330847-a84pcc9z 16 9 in in IN cord-330847-a84pcc9z 16 10 protoplasts protoplast NNS cord-330847-a84pcc9z 16 11 in in IN cord-330847-a84pcc9z 16 12 the the DT cord-330847-a84pcc9z 16 13 absence absence NN cord-330847-a84pcc9z 16 14 of of IN cord-330847-a84pcc9z 16 15 RNA RNA NNP cord-330847-a84pcc9z 16 16 fl fl NNP cord-330847-a84pcc9z 16 17 ( ( -LRB- cord-330847-a84pcc9z 16 18 Z Z NNP cord-330847-a84pcc9z 16 19 ) ) -RRB- cord-330847-a84pcc9z 16 20 , , , cord-330847-a84pcc9z 16 21 although although IN cord-330847-a84pcc9z 16 22 the the DT cord-330847-a84pcc9z 16 23 presence presence NN cord-330847-a84pcc9z 16 24 of of IN cord-330847-a84pcc9z 16 25 all all DT cord-330847-a84pcc9z 16 26 three three CD cord-330847-a84pcc9z 16 27 RNAs rna NNS cord-330847-a84pcc9z 16 28 is be VBZ cord-330847-a84pcc9z 16 29 essential essential JJ cord-330847-a84pcc9z 16 30 for for IN cord-330847-a84pcc9z 16 31 infection infection NN cord-330847-a84pcc9z 16 32 of of IN cord-330847-a84pcc9z 16 33 intact intact JJ cord-330847-a84pcc9z 16 34 plants plant NNS cord-330847-a84pcc9z 16 35 ( ( -LRB- cord-330847-a84pcc9z 16 36 3 3 CD cord-330847-a84pcc9z 16 37 ) ) -RRB- cord-330847-a84pcc9z 16 38 . . . cord-330847-a84pcc9z 17 1 Nucleotide nucleotide JJ cord-330847-a84pcc9z 17 2 sequence sequence NN cord-330847-a84pcc9z 17 3 analyses analysis NNS cord-330847-a84pcc9z 17 4 confirm confirm VBP cord-330847-a84pcc9z 17 5 that that IN cord-330847-a84pcc9z 17 6 the the DT cord-330847-a84pcc9z 17 7 cua cua NNP cord-330847-a84pcc9z 17 8 and and CC cord-330847-a84pcc9z 17 9 ya ya NNP cord-330847-a84pcc9z 17 10 genes gene NNS cord-330847-a84pcc9z 17 11 encode encode VBP cord-330847-a84pcc9z 17 12 the the DT cord-330847-a84pcc9z 17 13 essential essential JJ cord-330847-a84pcc9z 17 14 viral viral RB cord-330847-a84pcc9z 17 15 - - HYPH cord-330847-a84pcc9z 17 16 derived derive VBN cord-330847-a84pcc9z 17 17 replicase replicase NN cord-330847-a84pcc9z 17 18 components component NNS cord-330847-a84pcc9z 17 19 ( ( -LRB- cord-330847-a84pcc9z 17 20 4 4 CD cord-330847-a84pcc9z 17 21 , , , cord-330847-a84pcc9z 17 22 5 5 CD cord-330847-a84pcc9z 17 23 ) ) -RRB- cord-330847-a84pcc9z 17 24 . . . cord-330847-a84pcc9z 18 1 Although although IN cord-330847-a84pcc9z 18 2 the the DT cord-330847-a84pcc9z 18 3 sequence sequence NN cord-330847-a84pcc9z 18 4 of of IN cord-330847-a84pcc9z 18 5 each each DT cord-330847-a84pcc9z 18 6 RNA RNA NNP cord-330847-a84pcc9z 18 7 is be VBZ cord-330847-a84pcc9z 18 8 largely largely RB cord-330847-a84pcc9z 18 9 unique unique JJ cord-330847-a84pcc9z 18 10 , , , cord-330847-a84pcc9z 18 11 the the DT cord-330847-a84pcc9z 18 12 3'-terminus 3'-terminus CD cord-330847-a84pcc9z 18 13 of of IN cord-330847-a84pcc9z 18 14 each each DT cord-330847-a84pcc9z 18 15 RNA RNA NNP cord-330847-a84pcc9z 18 16 is be VBZ cord-330847-a84pcc9z 18 17 composed compose VBN cord-330847-a84pcc9z 18 18 of of IN cord-330847-a84pcc9z 18 19 a a DT cord-330847-a84pcc9z 18 20 highly highly RB cord-330847-a84pcc9z 18 21 conserved conserve VBN cord-330847-a84pcc9z 18 22 sequence sequence NN cord-330847-a84pcc9z 18 23 that that WDT cord-330847-a84pcc9z 18 24 can can MD cord-330847-a84pcc9z 18 25 be be VB cord-330847-a84pcc9z 18 26 folded fold VBN cord-330847-a84pcc9z 18 27 into into IN cord-330847-a84pcc9z 18 28 a a DT cord-330847-a84pcc9z 18 29 tRNA trna NN cord-330847-a84pcc9z 18 30 - - HYPH cord-330847-a84pcc9z 18 31 like like JJ cord-330847-a84pcc9z 18 32 structure structure NN cord-330847-a84pcc9z 18 33 and and CC cord-330847-a84pcc9z 18 34 aminoacylated aminoacylate VBN cord-330847-a84pcc9z 18 35 with with IN cord-330847-a84pcc9z 18 36 tyrosine tyrosine NN cord-330847-a84pcc9z 18 37 in in IN cord-330847-a84pcc9z 18 38 viva viva FW cord-330847-a84pcc9z 18 39 ( ( -LRB- cord-330847-a84pcc9z 18 40 6 6 CD cord-330847-a84pcc9z 18 41 ) ) -RRB- cord-330847-a84pcc9z 18 42 . . . cord-330847-a84pcc9z 19 1 A a DT cord-330847-a84pcc9z 19 2 " " `` cord-330847-a84pcc9z 19 3 bandaid bandaid NN cord-330847-a84pcc9z 19 4 " " '' cord-330847-a84pcc9z 19 5 cloning clone VBG cord-330847-a84pcc9z 19 6 strategy strategy NN cord-330847-a84pcc9z 19 7 , , , cord-330847-a84pcc9z 19 8 which which WDT cord-330847-a84pcc9z 19 9 exploits exploit VBZ cord-330847-a84pcc9z 19 10 the the DT cord-330847-a84pcc9z 19 11 conservation conservation NN cord-330847-a84pcc9z 19 12 of of IN cord-330847-a84pcc9z 19 13 the the DT cord-330847-a84pcc9z 19 14 3 3 CD cord-330847-a84pcc9z 19 15 ' ' POS cord-330847-a84pcc9z 19 16 terminal terminal JJ cord-330847-a84pcc9z 19 17 sequence sequence NN cord-330847-a84pcc9z 19 18 , , , cord-330847-a84pcc9z 19 19 as as RB cord-330847-a84pcc9z 19 20 well well RB cord-330847-a84pcc9z 19 21 as as IN cord-330847-a84pcc9z 19 22 the the DT cord-330847-a84pcc9z 19 23 unique unique JJ cord-330847-a84pcc9z 19 24 nature nature NN cord-330847-a84pcc9z 19 25 of of IN cord-330847-a84pcc9z 19 26 the the DT cord-330847-a84pcc9z 19 27 5 5 CD cord-330847-a84pcc9z 19 28 ' ' '' cord-330847-a84pcc9z 19 29 ends end NNS cord-330847-a84pcc9z 19 30 of of IN cord-330847-a84pcc9z 19 31 the the DT cord-330847-a84pcc9z 19 32 BSMV BSMV NNP cord-330847-a84pcc9z 19 33 RNAs rna NNS cord-330847-a84pcc9z 19 34 , , , cord-330847-a84pcc9z 19 35 has have VBZ cord-330847-a84pcc9z 19 36 been be VBN cord-330847-a84pcc9z 19 37 used use VBN cord-330847-a84pcc9z 19 38 previously previously RB cord-330847-a84pcc9z 19 39 to to TO cord-330847-a84pcc9z 19 40 obtain obtain VB cord-330847-a84pcc9z 19 41 full full JJ cord-330847-a84pcc9z 19 42 - - HYPH cord-330847-a84pcc9z 19 43 length length NN cord-330847-a84pcc9z 19 44 cDNA cdna NN cord-330847-a84pcc9z 19 45 clones clone NNS cord-330847-a84pcc9z 19 46 from from IN cord-330847-a84pcc9z 19 47 which which WDT cord-330847-a84pcc9z 19 48 infectious infectious JJ cord-330847-a84pcc9z 19 49 in in IN cord-330847-a84pcc9z 19 50 vitro vitro FW cord-330847-a84pcc9z 19 51 transcripts transcript NNS cord-330847-a84pcc9z 19 52 can can MD cord-330847-a84pcc9z 19 53 be be VB cord-330847-a84pcc9z 19 54 produced produce VBN cord-330847-a84pcc9z 19 55 ( ( -LRB- cord-330847-a84pcc9z 19 56 3 3 CD cord-330847-a84pcc9z 19 57 , , , cord-330847-a84pcc9z 19 58 7 7 CD cord-330847-a84pcc9z 19 59 ) ) -RRB- cord-330847-a84pcc9z 19 60 . . . cord-330847-a84pcc9z 20 1 We -PRON- PRP cord-330847-a84pcc9z 20 2 have have VBP cord-330847-a84pcc9z 20 3 now now RB cord-330847-a84pcc9z 20 4 used use VBN cord-330847-a84pcc9z 20 5 this this DT cord-330847-a84pcc9z 20 6 strategy strategy NN cord-330847-a84pcc9z 20 7 to to TO cord-330847-a84pcc9z 20 8 clone clone VB cord-330847-a84pcc9z 20 9 the the DT cord-330847-a84pcc9z 20 10 entire entire JJ cord-330847-a84pcc9z 20 11 genome genome NN cord-330847-a84pcc9z 20 12 of of IN cord-330847-a84pcc9z 20 13 BSMV BSMV NNP cord-330847-a84pcc9z 20 14 strain strain VBP cord-330847-a84pcc9z 20 15 CV17 CV17 NNP cord-330847-a84pcc9z 20 16 . . . cord-330847-a84pcc9z 21 1 Analysis analysis NN cord-330847-a84pcc9z 21 2 of of IN cord-330847-a84pcc9z 21 3 the the DT cord-330847-a84pcc9z 21 4 resulting result VBG cord-330847-a84pcc9z 21 5 cDNA cdna NN cord-330847-a84pcc9z 21 6 clones clone NNS cord-330847-a84pcc9z 21 7 suggested suggest VBD cord-330847-a84pcc9z 21 8 that that IN cord-330847-a84pcc9z 21 9 CV17 CV17 NNP cord-330847-a84pcc9z 21 10 RNA RNA NNP cord-330847-a84pcc9z 21 11 y y NNP cord-330847-a84pcc9z 21 12 is be VBZ cord-330847-a84pcc9z 21 13 a a DT cord-330847-a84pcc9z 21 14 naturally naturally RB cord-330847-a84pcc9z 21 15 occurring occur VBG cord-330847-a84pcc9z 21 16 chimeric chimeric JJ cord-330847-a84pcc9z 21 17 recombinant recombinant NN cord-330847-a84pcc9z 21 18 , , , cord-330847-a84pcc9z 21 19 composed compose VBN cord-330847-a84pcc9z 21 20 of of IN cord-330847-a84pcc9z 21 21 a a DT cord-330847-a84pcc9z 21 22 70nucleotide 70nucleotide NN cord-330847-a84pcc9z 21 23 ( ( -LRB- cord-330847-a84pcc9z 21 24 nt nt RB cord-330847-a84pcc9z 21 25 ) ) -RRB- cord-330847-a84pcc9z 21 26 a a DT cord-330847-a84pcc9z 21 27 - - HYPH cord-330847-a84pcc9z 21 28 specific specific JJ cord-330847-a84pcc9z 21 29 leader leader NN cord-330847-a84pcc9z 21 30 sequence sequence NN cord-330847-a84pcc9z 21 31 preceding precede VBG cord-330847-a84pcc9z 21 32 a a DT cord-330847-a84pcc9z 21 33 r r NN cord-330847-a84pcc9z 21 34 - - HYPH cord-330847-a84pcc9z 21 35 specific specific JJ cord-330847-a84pcc9z 21 36 coding code VBG cord-330847-a84pcc9z 21 37 region region NN cord-330847-a84pcc9z 21 38 . . . cord-330847-a84pcc9z 22 1 Further- Further- NNP cord-330847-a84pcc9z 22 2 ' ' '' cord-330847-a84pcc9z 23 1 To to TO cord-330847-a84pcc9z 23 2 whom whom WP cord-330847-a84pcc9z 23 3 reprint reprint VB cord-330847-a84pcc9z 23 4 requests request NNS cord-330847-a84pcc9z 23 5 should should MD cord-330847-a84pcc9z 23 6 be be VB cord-330847-a84pcc9z 23 7 addressed address VBN cord-330847-a84pcc9z 23 8 . . . cord-330847-a84pcc9z 24 1 more more JJR cord-330847-a84pcc9z 24 2 , , , cord-330847-a84pcc9z 24 3 hybridization hybridization NN cord-330847-a84pcc9z 24 4 and and CC cord-330847-a84pcc9z 24 5 bioassay bioassay NN cord-330847-a84pcc9z 24 6 data datum NNS cord-330847-a84pcc9z 24 7 indicate indicate VBP cord-330847-a84pcc9z 24 8 that that IN cord-330847-a84pcc9z 24 9 these these DT cord-330847-a84pcc9z 24 10 clones clone NNS cord-330847-a84pcc9z 24 11 are be VBP cord-330847-a84pcc9z 24 12 representative representative JJ cord-330847-a84pcc9z 24 13 of of IN cord-330847-a84pcc9z 24 14 native native JJ cord-330847-a84pcc9z 24 15 CV17 CV17 NNP cord-330847-a84pcc9z 24 16 y y NNP cord-330847-a84pcc9z 24 17 RNAs rna NNS cord-330847-a84pcc9z 24 18 . . . cord-330847-a84pcc9z 25 1 One one CD cord-330847-a84pcc9z 25 2 of of IN cord-330847-a84pcc9z 25 3 these these DT cord-330847-a84pcc9z 25 4 CV17 CV17 NNP cord-330847-a84pcc9z 25 5 y y NNP cord-330847-a84pcc9z 25 6 cDNA cDNA NNP cord-330847-a84pcc9z 25 7 clones clone NNS cord-330847-a84pcc9z 25 8 has have VBZ cord-330847-a84pcc9z 25 9 been be VBN cord-330847-a84pcc9z 25 10 used use VBN cord-330847-a84pcc9z 25 11 previously previously RB cord-330847-a84pcc9z 25 12 to to TO cord-330847-a84pcc9z 25 13 investigate investigate VB cord-330847-a84pcc9z 25 14 the the DT cord-330847-a84pcc9z 25 15 effects effect NNS cord-330847-a84pcc9z 25 16 of of IN cord-330847-a84pcc9z 25 17 short short JJ cord-330847-a84pcc9z 25 18 ORFs orfs NN cord-330847-a84pcc9z 25 19 in in IN cord-330847-a84pcc9z 25 20 the the DT cord-330847-a84pcc9z 25 21 5 5 CD cord-330847-a84pcc9z 25 22 ' ' POS cord-330847-a84pcc9z 25 23 leader leader NN cord-330847-a84pcc9z 25 24 of of IN cord-330847-a84pcc9z 25 25 RNA RNA NNP cord-330847-a84pcc9z 25 26 y y NNP cord-330847-a84pcc9z 25 27 on on IN cord-330847-a84pcc9z 25 28 the the DT cord-330847-a84pcc9z 25 29 systemic systemic JJ cord-330847-a84pcc9z 25 30 movement movement NN cord-330847-a84pcc9z 25 31 of of IN cord-330847-a84pcc9z 25 32 BSMV BSMV NNP cord-330847-a84pcc9z 25 33 in in IN cord-330847-a84pcc9z 25 34 Mcotiana Mcotiana NNP cord-330847-a84pcc9z 25 35 benthamiana benthamiana NNP cord-330847-a84pcc9z 25 36 ( ( -LRB- cord-330847-a84pcc9z 25 37 8) 8) NNP cord-330847-a84pcc9z 25 38 . . . cord-330847-a84pcc9z 26 1 The the DT cord-330847-a84pcc9z 26 2 present present JJ cord-330847-a84pcc9z 26 3 paper paper NN cord-330847-a84pcc9z 26 4 provides provide VBZ cord-330847-a84pcc9z 26 5 evidence evidence NN cord-330847-a84pcc9z 26 6 for for IN cord-330847-a84pcc9z 26 7 the the DT cord-330847-a84pcc9z 26 8 recombinant recombinant JJ cord-330847-a84pcc9z 26 9 nature nature NN cord-330847-a84pcc9z 26 10 of of IN cord-330847-a84pcc9z 26 11 CV17 CV17 NNP cord-330847-a84pcc9z 26 12 RNA RNA NNP cord-330847-a84pcc9z 26 13 y. y. XX cord-330847-a84pcc9z 26 14 BSMV BSMV NNP cord-330847-a84pcc9z 26 15 strain strain VBP cord-330847-a84pcc9z 26 16 CV17 CV17 NNP cord-330847-a84pcc9z 26 17 was be VBD cord-330847-a84pcc9z 26 18 propagated propagate VBN cord-330847-a84pcc9z 26 19 in in IN cord-330847-a84pcc9z 26 20 barley barley NN cord-330847-a84pcc9z 26 21 ( ( -LRB- cord-330847-a84pcc9z 26 22 Hordeum Hordeum NNP cord-330847-a84pcc9z 26 23 vulgare vulgare NNP cord-330847-a84pcc9z 26 24 cv cv NNP cord-330847-a84pcc9z 26 25 . . . cord-330847-a84pcc9z 26 26 " " '' cord-330847-a84pcc9z 27 1 Black Black NNP cord-330847-a84pcc9z 27 2 Hulless Hulless NNP cord-330847-a84pcc9z 27 3 , , , cord-330847-a84pcc9z 27 4 " " '' cord-330847-a84pcc9z 27 5 C.I. C.I. NNP cord-330847-a84pcc9z 27 6 666 666 CD cord-330847-a84pcc9z 27 7 ) ) -RRB- cord-330847-a84pcc9z 27 8 and and CC cord-330847-a84pcc9z 27 9 purified purify VBN cord-330847-a84pcc9z 27 10 as as IN cord-330847-a84pcc9z 27 11 previously previously RB cord-330847-a84pcc9z 27 12 reported report VBN cord-330847-a84pcc9z 27 13 ( ( -LRB- cord-330847-a84pcc9z 27 14 9 9 CD cord-330847-a84pcc9z 27 15 ) ) -RRB- cord-330847-a84pcc9z 27 16 . . . cord-330847-a84pcc9z 28 1 Virion Virion NNP cord-330847-a84pcc9z 28 2 RNA RNA NNP cord-330847-a84pcc9z 28 3 was be VBD cord-330847-a84pcc9z 28 4 extracted extract VBN cord-330847-a84pcc9z 28 5 using use VBG cord-330847-a84pcc9z 28 6 a a DT cord-330847-a84pcc9z 28 7 phenol phenol NN cord-330847-a84pcc9z 28 8 - - HYPH cord-330847-a84pcc9z 28 9 SDS sds NN cord-330847-a84pcc9z 28 10 procedure procedure NN cord-330847-a84pcc9z 28 11 and and CC cord-330847-a84pcc9z 28 12 was be VBD cord-330847-a84pcc9z 28 13 subsequently subsequently RB cord-330847-a84pcc9z 28 14 recovered recover VBN cord-330847-a84pcc9z 28 15 by by IN cord-330847-a84pcc9z 28 16 ethanol ethanol NN cord-330847-a84pcc9z 28 17 precipitation precipitation NN cord-330847-a84pcc9z 28 18 , , , cord-330847-a84pcc9z 28 19 followed follow VBN cord-330847-a84pcc9z 28 20 by by IN cord-330847-a84pcc9z 28 21 3 3 CD cord-330847-a84pcc9z 28 22 A.4 A.4 NNP cord-330847-a84pcc9z 28 23 sodium sodium NN cord-330847-a84pcc9z 28 24 acetate acetate NN cord-330847-a84pcc9z 28 25 precipitation precipitation NN cord-330847-a84pcc9z 28 26 , , , cord-330847-a84pcc9z 28 27 and and CC cord-330847-a84pcc9z 28 28 finally finally RB cord-330847-a84pcc9z 28 29 by by IN cord-330847-a84pcc9z 28 30 ethanol ethanol NN cord-330847-a84pcc9z 28 31 precipitation precipitation NN cord-330847-a84pcc9z 28 32 again again RB cord-330847-a84pcc9z 28 33 ( ( -LRB- cord-330847-a84pcc9z 28 34 7 7 CD cord-330847-a84pcc9z 28 35 ) ) -RRB- cord-330847-a84pcc9z 28 36 . . . cord-330847-a84pcc9z 29 1 This this DT cord-330847-a84pcc9z 29 2 mixture mixture NN cord-330847-a84pcc9z 29 3 of of IN cord-330847-a84pcc9z 29 4 RNAs rna NNS cord-330847-a84pcc9z 29 5 ( ( -LRB- cord-330847-a84pcc9z 29 6 Y Y NNP cord-330847-a84pcc9z 29 7 , , , cord-330847-a84pcc9z 29 8 p p NN cord-330847-a84pcc9z 29 9 , , , cord-330847-a84pcc9z 29 10 and and CC cord-330847-a84pcc9z 29 11 y y NNP cord-330847-a84pcc9z 29 12 was be VBD cord-330847-a84pcc9z 29 13 then then RB cord-330847-a84pcc9z 29 14 used use VBN cord-330847-a84pcc9z 29 15 for for IN cord-330847-a84pcc9z 29 16 cDNA cdna NN cord-330847-a84pcc9z 29 17 synthesis synthesis NN cord-330847-a84pcc9z 29 18 and and CC cord-330847-a84pcc9z 29 19 cloning clone VBG cord-330847-a84pcc9z 29 20 as as IN cord-330847-a84pcc9z 29 21 previously previously RB cord-330847-a84pcc9z 29 22 described describe VBN cord-330847-a84pcc9z 29 23 for for IN cord-330847-a84pcc9z 29 24 the the DT cord-330847-a84pcc9z 29 25 ND1 ND1 NNP cord-330847-a84pcc9z 29 26 8 8 CD cord-330847-a84pcc9z 29 27 and and CC cord-330847-a84pcc9z 29 28 Type type NN cord-330847-a84pcc9z 29 29 strains strain NNS cord-330847-a84pcc9z 29 30 of of IN cord-330847-a84pcc9z 29 31 BSMV BSMV NNP cord-330847-a84pcc9z 29 32 ( ( -LRB- cord-330847-a84pcc9z 29 33 7 7 CD cord-330847-a84pcc9z 29 34 ) ) -RRB- cord-330847-a84pcc9z 29 35 . . . cord-330847-a84pcc9z 30 1 Briefly briefly RB cord-330847-a84pcc9z 30 2 , , , cord-330847-a84pcc9z 30 3 linearized linearize VBN cord-330847-a84pcc9z 30 4 single single RB cord-330847-a84pcc9z 30 5 - - HYPH cord-330847-a84pcc9z 30 6 stranded strand VBN cord-330847-a84pcc9z 30 7 phagemid phagemid NN cord-330847-a84pcc9z 30 8 DNA dna NN cord-330847-a84pcc9z 30 9 with with IN cord-330847-a84pcc9z 30 10 a a DT cord-330847-a84pcc9z 30 11 T7 T7 NNP cord-330847-a84pcc9z 30 12 promoter promoter NN cord-330847-a84pcc9z 30 13 sequence sequence NN cord-330847-a84pcc9z 30 14 at at IN cord-330847-a84pcc9z 30 15 its -PRON- PRP$ cord-330847-a84pcc9z 30 16 5'-end 5'-end CD cord-330847-a84pcc9z 30 17 and and CC cord-330847-a84pcc9z 30 18 a a DT cord-330847-a84pcc9z 30 19 short short JJ cord-330847-a84pcc9z 30 20 3'-terminal 3'-terminal JJ cord-330847-a84pcc9z 30 21 sequence sequence NN cord-330847-a84pcc9z 30 22 complementary complementary JJ cord-330847-a84pcc9z 30 23 to to IN cord-330847-a84pcc9z 30 24 the the DT cord-330847-a84pcc9z 30 25 3'-end 3'-end CD cord-330847-a84pcc9z 30 26 of of IN cord-330847-a84pcc9z 30 27 BSMV BSMV NNP cord-330847-a84pcc9z 30 28 RNA RNA NNP cord-330847-a84pcc9z 30 29 was be VBD cord-330847-a84pcc9z 30 30 used use VBN cord-330847-a84pcc9z 30 31 as as IN cord-330847-a84pcc9z 30 32 a a DT cord-330847-a84pcc9z 30 33 primer primer NN cord-330847-a84pcc9z 30 34 for for IN cord-330847-a84pcc9z 30 35 firststrand firststrand NNP cord-330847-a84pcc9z 30 36 cDNA cDNA NNP cord-330847-a84pcc9z 30 37 synthesis synthesis NN cord-330847-a84pcc9z 30 38 . . . cord-330847-a84pcc9z 31 1 Phagemid Phagemid NNP cord-330847-a84pcc9z 31 2 - - HYPH cord-330847-a84pcc9z 31 3 linked link VBN cord-330847-a84pcc9z 31 4 full full JJ cord-330847-a84pcc9z 31 5 - - HYPH cord-330847-a84pcc9z 31 6 length length NN cord-330847-a84pcc9z 31 7 cDNA cdna NN cord-330847-a84pcc9z 31 8 was be VBD cord-330847-a84pcc9z 31 9 then then RB cord-330847-a84pcc9z 31 10 circularized circularize VBN cord-330847-a84pcc9z 31 11 by by IN cord-330847-a84pcc9z 31 12 annealing anneal VBG cord-330847-a84pcc9z 31 13 to to IN cord-330847-a84pcc9z 31 14 a a DT cord-330847-a84pcc9z 31 15 bandaid bandaid NN cord-330847-a84pcc9z 31 16 oligonucleotide oligonucleotide JJ cord-330847-a84pcc9z 31 17 with with IN cord-330847-a84pcc9z 31 18 sequence sequence NN cord-330847-a84pcc9z 31 19 complementary complementary JJ cord-330847-a84pcc9z 31 20 to to IN cord-330847-a84pcc9z 31 21 both both DT cord-330847-a84pcc9z 31 22 ends end NNS cord-330847-a84pcc9z 31 23 of of IN cord-330847-a84pcc9z 31 24 the the DT cord-330847-a84pcc9z 31 25 phagemid phagemid NN cord-330847-a84pcc9z 31 26 : : : cord-330847-a84pcc9z 31 27 cDNA cDNA NNP cord-330847-a84pcc9z 31 28 . . . cord-330847-a84pcc9z 32 1 The the DT cord-330847-a84pcc9z 32 2 use use NN cord-330847-a84pcc9z 32 3 of of IN cord-330847-a84pcc9z 32 4 three three CD cord-330847-a84pcc9z 32 5 different different JJ cord-330847-a84pcc9z 32 6 bandaid bandaid NN cord-330847-a84pcc9z 32 7 oligonucleotides oligonucleotide NNS cord-330847-a84pcc9z 32 8 , , , cord-330847-a84pcc9z 32 9 each each DT cord-330847-a84pcc9z 32 10 with with IN cord-330847-a84pcc9z 32 11 5'-ends 5'-ends CD cord-330847-a84pcc9z 32 12 complementary complementary JJ cord-330847-a84pcc9z 32 13 to to IN cord-330847-a84pcc9z 32 14 the the DT cord-330847-a84pcc9z 32 15 T7 T7 NNP cord-330847-a84pcc9z 32 16 promoter promoter NN cord-330847-a84pcc9z 32 17 sequence sequence NN cord-330847-a84pcc9z 32 18 and and CC cord-330847-a84pcc9z 32 19 with with IN cord-330847-a84pcc9z 32 20 3'-ends 3'-ends CD cord-330847-a84pcc9z 32 21 complementary complementary JJ cord-330847-a84pcc9z 32 22 to to IN cord-330847-a84pcc9z 32 23 the the DT cord-330847-a84pcc9z 32 24 5'-ends 5'-ends CD cord-330847-a84pcc9z 32 25 of of IN cord-330847-a84pcc9z 32 26 either either DT cord-330847-a84pcc9z 32 27 full full JJ cord-330847-a84pcc9z 32 28 - - HYPH cord-330847-a84pcc9z 32 29 length length NN cord-330847-a84pcc9z 32 30 ( ( -LRB- cord-330847-a84pcc9z 32 31 Y y NN cord-330847-a84pcc9z 32 32 , , , cord-330847-a84pcc9z 32 33 p p NN cord-330847-a84pcc9z 32 34 , , , cord-330847-a84pcc9z 32 35 or or CC cord-330847-a84pcc9z 32 36 y y NNP cord-330847-a84pcc9z 32 37 cDNAs cDNAs NNPS cord-330847-a84pcc9z 32 38 , , , cord-330847-a84pcc9z 32 39 provided provide VBD cord-330847-a84pcc9z 32 40 a a DT cord-330847-a84pcc9z 32 41 means means NN cord-330847-a84pcc9z 32 42 of of IN cord-330847-a84pcc9z 32 43 isolating isolate VBG cord-330847-a84pcc9z 32 44 specific specific JJ cord-330847-a84pcc9z 32 45 fulllength fulllength NN cord-330847-a84pcc9z 32 46 cDNA cdna NN cord-330847-a84pcc9z 32 47 clones clone NNS cord-330847-a84pcc9z 32 48 in in IN cord-330847-a84pcc9z 32 49 a a DT cord-330847-a84pcc9z 32 50 single single JJ cord-330847-a84pcc9z 32 51 cloning cloning NN cord-330847-a84pcc9z 32 52 operation operation NN cord-330847-a84pcc9z 32 53 with- with- XX cord-330847-a84pcc9z 32 54 out out RP cord-330847-a84pcc9z 32 55 the the DT cord-330847-a84pcc9z 32 56 need need NN cord-330847-a84pcc9z 32 57 for for IN cord-330847-a84pcc9z 32 58 prior prior JJ cord-330847-a84pcc9z 32 59 separation separation NN cord-330847-a84pcc9z 32 60 of of IN cord-330847-a84pcc9z 32 61 the the DT cord-330847-a84pcc9z 32 62 ( ( -LRB- cord-330847-a84pcc9z 32 63 Y Y NNP cord-330847-a84pcc9z 32 64 , , , cord-330847-a84pcc9z 32 65 0 0 CD cord-330847-a84pcc9z 32 66 , , , cord-330847-a84pcc9z 32 67 and and CC cord-330847-a84pcc9z 32 68 y y NNP cord-330847-a84pcc9z 32 69 RNAs rna NNS cord-330847-a84pcc9z 32 70 . . . cord-330847-a84pcc9z 33 1 Full full JJ cord-330847-a84pcc9z 33 2 - - HYPH cord-330847-a84pcc9z 33 3 length length NN cord-330847-a84pcc9z 33 4 clones clone NNS cord-330847-a84pcc9z 33 5 were be VBD cord-330847-a84pcc9z 33 6 initially initially RB cord-330847-a84pcc9z 33 7 identified identify VBN cord-330847-a84pcc9z 33 8 by by IN cord-330847-a84pcc9z 33 9 colony colony NN cord-330847-a84pcc9z 33 10 color color NN cord-330847-a84pcc9z 33 11 and and CC cord-330847-a84pcc9z 33 12 gel gel NN cord-330847-a84pcc9z 33 13 electrophoresis electrophoresis NN cord-330847-a84pcc9z 33 14 of of IN cord-330847-a84pcc9z 33 15 ssDNA ssdna RB cord-330847-a84pcc9z 33 16 obtained obtain VBN cord-330847-a84pcc9z 33 17 after after IN cord-330847-a84pcc9z 33 18 superinfection superinfection NN cord-330847-a84pcc9z 33 19 of of IN cord-330847-a84pcc9z 33 20 transformed transform VBN cord-330847-a84pcc9z 33 21 Escherichia escherichia NN cord-330847-a84pcc9z 34 1 co/ co/ NNP cord-330847-a84pcc9z 35 1 i i PRP cord-330847-a84pcc9z 35 2 strain strain VBP cord-330847-a84pcc9z 35 3 DH5aF DH5aF NNP cord-330847-a84pcc9z 35 4 ' ' '' cord-330847-a84pcc9z 35 5 with with IN cord-330847-a84pcc9z 35 6 bacteriophage bacteriophage NN cord-330847-a84pcc9z 35 7 Ml Ml NNP cord-330847-a84pcc9z 35 8 3K07 3k07 CD cord-330847-a84pcc9z 35 9 , , , cord-330847-a84pcc9z 35 10 as as IN cord-330847-a84pcc9z 35 11 described describe VBN cord-330847-a84pcc9z 35 12 previously previously RB cord-330847-a84pcc9z 35 13 ( ( -LRB- cord-330847-a84pcc9z 35 14 7 7 CD cord-330847-a84pcc9z 35 15 ) ) -RRB- cord-330847-a84pcc9z 35 16 . . . cord-330847-a84pcc9z 36 1 The the DT cord-330847-a84pcc9z 36 2 full full JJ cord-330847-a84pcc9z 36 3 - - HYPH cord-330847-a84pcc9z 36 4 length length NN cord-330847-a84pcc9z 36 5 nature nature NN cord-330847-a84pcc9z 36 6 of of IN cord-330847-a84pcc9z 36 7 individual individual JJ cord-330847-a84pcc9z 36 8 clones clone NNS cord-330847-a84pcc9z 36 9 and and CC cord-330847-a84pcc9z 36 10 the the DT cord-330847-a84pcc9z 36 11 integrity integrity NN cord-330847-a84pcc9z 36 12 of of IN cord-330847-a84pcc9z 36 13 the the DT cord-330847-a84pcc9z 36 14 T7 T7 NNP cord-330847-a84pcc9z 36 15 promoter promoter NN cord-330847-a84pcc9z 36 16 / / SYM cord-330847-a84pcc9z 36 17 BSMV BSMV NNP cord-330847-a84pcc9z 36 18 5'-end 5'-end CD cord-330847-a84pcc9z 36 19 junction junction NN cord-330847-a84pcc9z 36 20 were be VBD cord-330847-a84pcc9z 36 21 verified verify VBN cord-330847-a84pcc9z 36 22 by by IN cord-330847-a84pcc9z 36 23 dideoxynucleotide dideoxynucleotide NN cord-330847-a84pcc9z 36 24 sequencing sequencing NN cord-330847-a84pcc9z 36 25 of of IN cord-330847-a84pcc9z 36 26 ssDNA ssdna NN cord-330847-a84pcc9z 36 27 templates template NNS cord-330847-a84pcc9z 36 28 ( ( -LRB- cord-330847-a84pcc9z 36 29 10 10 CD cord-330847-a84pcc9z 36 30 ) ) -RRB- cord-330847-a84pcc9z 36 31 . . . cord-330847-a84pcc9z 37 1 Full full JJ cord-330847-a84pcc9z 37 2 - - HYPH cord-330847-a84pcc9z 37 3 length length NN cord-330847-a84pcc9z 37 4 CV17 CV17 NNP cord-330847-a84pcc9z 37 5 ( ( -LRB- cord-330847-a84pcc9z 37 6 Y Y NNP cord-330847-a84pcc9z 37 7 and and CC cord-330847-a84pcc9z 37 8 p p NN cord-330847-a84pcc9z 37 9 cDNA cdna NN cord-330847-a84pcc9z 37 10 clones clone NNS cord-330847-a84pcc9z 37 11 were be VBD cord-330847-a84pcc9z 37 12 successfully successfully RB cord-330847-a84pcc9z 37 13 isolated isolate VBN cord-330847-a84pcc9z 37 14 using use VBG cord-330847-a84pcc9z 37 15 the the DT cord-330847-a84pcc9z 37 16 CY CY NNP cord-330847-a84pcc9z 37 17 and and CC cord-330847-a84pcc9z 37 18 , , , cord-330847-a84pcc9z 37 19 f3 f3 NNP cord-330847-a84pcc9z 37 20 bandaid bandaid NN cord-330847-a84pcc9z 37 21 oligonucleotides oligonucleotide NNS cord-330847-a84pcc9z 37 22 , , , cord-330847-a84pcc9z 37 23 respectively respectively RB cord-330847-a84pcc9z 37 24 . . . cord-330847-a84pcc9z 38 1 However however RB cord-330847-a84pcc9z 38 2 , , , cord-330847-a84pcc9z 38 3 all all DT cord-330847-a84pcc9z 38 4 attempts attempt NNS cord-330847-a84pcc9z 38 5 to to TO cord-330847-a84pcc9z 38 6 isolate isolate VB cord-330847-a84pcc9z 38 7 full full JJ cord-330847-a84pcc9z 38 8 - - HYPH cord-330847-a84pcc9z 38 9 length length NN cord-330847-a84pcc9z 38 10 y y NNP cord-330847-a84pcc9z 38 11 clones clone NNS cord-330847-a84pcc9z 38 12 using use VBG cord-330847-a84pcc9z 38 13 the the DT cord-330847-a84pcc9z 38 14 y y NNP cord-330847-a84pcc9z 38 15 bandaid bandaid NN cord-330847-a84pcc9z 38 16 oligonucleotide oligonucleotide NNP cord-330847-a84pcc9z 38 17 were be VBD cord-330847-a84pcc9z 38 18 unsuccessful unsuccessful JJ cord-330847-a84pcc9z 38 19 . . . cord-330847-a84pcc9z 39 1 Instead instead RB cord-330847-a84pcc9z 39 2 , , , cord-330847-a84pcc9z 39 3 the the DT cord-330847-a84pcc9z 39 4 initial initial JJ cord-330847-a84pcc9z 39 5 size size NN cord-330847-a84pcc9z 39 6 screening screening NN cord-330847-a84pcc9z 39 7 of of IN cord-330847-a84pcc9z 39 8 cDNA cdna NN cord-330847-a84pcc9z 39 9 clones clone NNS cord-330847-a84pcc9z 39 10 obtained obtain VBN cord-330847-a84pcc9z 39 11 with with IN cord-330847-a84pcc9z 39 12 the the DT cord-330847-a84pcc9z 39 13 ( ( -LRB- cord-330847-a84pcc9z 39 14 Y Y NNP cord-330847-a84pcc9z 39 15 bandaid bandaid NN cord-330847-a84pcc9z 39 16 oligonucleotide oligonucleotide NN cord-330847-a84pcc9z 39 17 resulted result VBD cord-330847-a84pcc9z 39 18 in in IN cord-330847-a84pcc9z 39 19 the the DT cord-330847-a84pcc9z 39 20 identification identification NN cord-330847-a84pcc9z 39 21 of of IN cord-330847-a84pcc9z 39 22 one one CD cord-330847-a84pcc9z 39 23 with with IN cord-330847-a84pcc9z 39 24 an an DT cord-330847-a84pcc9z 39 25 insert insert NN cord-330847-a84pcc9z 39 26 equivalent equivalent NN cord-330847-a84pcc9z 39 27 in in IN cord-330847-a84pcc9z 39 28 size size NN cord-330847-a84pcc9z 39 29 to to IN cord-330847-a84pcc9z 39 30 a a DT cord-330847-a84pcc9z 39 31 3.2-kb 3.2-kb CD cord-330847-a84pcc9z 39 32 y y NNP cord-330847-a84pcc9z 39 33 RNA RNA NNP cord-330847-a84pcc9z 39 34 rather rather RB cord-330847-a84pcc9z 39 35 than than IN cord-330847-a84pcc9z 39 36 a a DT cord-330847-a84pcc9z 39 37 full full JJ cord-330847-a84pcc9z 39 38 - - HYPH cord-330847-a84pcc9z 39 39 length length NN cord-330847-a84pcc9z 39 40 ( ( -LRB- cord-330847-a84pcc9z 39 41 Y Y NNP cord-330847-a84pcc9z 39 42 RNA RNA NNP cord-330847-a84pcc9z 39 43 ( ( -LRB- cord-330847-a84pcc9z 39 44 3.8 3.8 CD cord-330847-a84pcc9z 39 45 kb kb NNP cord-330847-a84pcc9z 39 46 ) ) -RRB- cord-330847-a84pcc9z 39 47 . . . cord-330847-a84pcc9z 40 1 Fourteen fourteen CD cord-330847-a84pcc9z 40 2 additional additional JJ cord-330847-a84pcc9z 40 3 clones clone NNS cord-330847-a84pcc9z 40 4 with with IN cord-330847-a84pcc9z 40 5 inserts insert NNS cord-330847-a84pcc9z 40 6 of of IN cord-330847-a84pcc9z 40 7 this this DT cord-330847-a84pcc9z 40 8 size size NN cord-330847-a84pcc9z 40 9 were be VBD cord-330847-a84pcc9z 40 10 identified identify VBN cord-330847-a84pcc9z 40 11 in in IN cord-330847-a84pcc9z 40 12 subsequent subsequent JJ cord-330847-a84pcc9z 40 13 cloning clone VBG cord-330847-a84pcc9z 40 14 experiments experiment NNS cord-330847-a84pcc9z 40 15 utilizing utilize VBG cord-330847-a84pcc9z 40 16 the the DT cord-330847-a84pcc9z 40 17 ( ( -LRB- cord-330847-a84pcc9z 40 18 Y Y NNP cord-330847-a84pcc9z 40 19 bandaid bandaid NN cord-330847-a84pcc9z 40 20 oligonucleotide oligonucleotide NN cord-330847-a84pcc9z 40 21 , , , cord-330847-a84pcc9z 40 22 whereas whereas IN cord-330847-a84pcc9z 40 23 only only RB cord-330847-a84pcc9z 40 24 one one CD cord-330847-a84pcc9z 40 25 full full JJ cord-330847-a84pcc9z 40 26 - - HYPH cord-330847-a84pcc9z 40 27 length length NN cord-330847-a84pcc9z 40 28 ( ( -LRB- cord-330847-a84pcc9z 40 29 Y y NN cord-330847-a84pcc9z 40 30 clone clone NN cord-330847-a84pcc9z 40 31 was be VBD cord-330847-a84pcc9z 40 32 isolated isolate VBN cord-330847-a84pcc9z 40 33 . . . cord-330847-a84pcc9z 41 1 Analysis analysis NN cord-330847-a84pcc9z 41 2 of of IN cord-330847-a84pcc9z 41 3 Rsal Rsal NNP cord-330847-a84pcc9z 41 4 RFLPs RFLPs NNP cord-330847-a84pcc9z 41 5 in in IN cord-330847-a84pcc9z 41 6 these these DT cord-330847-a84pcc9z 41 7 fifteen fifteen CD cord-330847-a84pcc9z 41 8 putative putative JJ cord-330847-a84pcc9z 41 9 y y NN cord-330847-a84pcc9z 41 10 - - HYPH cord-330847-a84pcc9z 41 11 specific specific JJ cord-330847-a84pcc9z 41 12 CV17 CV17 NNP cord-330847-a84pcc9z 41 13 cDNA cdna NN cord-330847-a84pcc9z 41 14 clones clone NNS cord-330847-a84pcc9z 41 15 indicated indicate VBD cord-330847-a84pcc9z 41 16 that that IN cord-330847-a84pcc9z 41 17 all all DT cord-330847-a84pcc9z 41 18 were be VBD cord-330847-a84pcc9z 41 19 similar similar JJ cord-330847-a84pcc9z 41 20 to to IN cord-330847-a84pcc9z 41 21 each each DT cord-330847-a84pcc9z 41 22 other other JJ cord-330847-a84pcc9z 41 23 , , , cord-330847-a84pcc9z 41 24 but but CC cord-330847-a84pcc9z 41 25 that that IN cord-330847-a84pcc9z 41 26 they -PRON- PRP cord-330847-a84pcc9z 41 27 differed differ VBD cord-330847-a84pcc9z 41 28 from from IN cord-330847-a84pcc9z 41 29 the the DT cord-330847-a84pcc9z 41 30 BSMV BSMV NNP cord-330847-a84pcc9z 41 31 Type Type NNP cord-330847-a84pcc9z 41 32 or or CC cord-330847-a84pcc9z 41 33 ND1 ND1 NNP cord-330847-a84pcc9z 41 34 8 8 CD cord-330847-a84pcc9z 41 35 strain strain NN cord-330847-a84pcc9z 41 36 y y NNP cord-330847-a84pcc9z 41 37 cDNA cDNA NNP cord-330847-a84pcc9z 41 38 clones clone NNS cord-330847-a84pcc9z 41 39 previously previously RB cord-330847-a84pcc9z 41 40 isolated isolate VBN cord-330847-a84pcc9z 41 41 by by IN cord-330847-a84pcc9z 41 42 Petty Petty NNP cord-330847-a84pcc9z 41 43 et et NNP cord-330847-a84pcc9z 41 44 a/. a/. NNP cord-330847-a84pcc9z 41 45 ( ( -LRB- cord-330847-a84pcc9z 41 46 3 3 CD cord-330847-a84pcc9z 41 47 ) ) -RRB- cord-330847-a84pcc9z 42 1 ( ( -LRB- cord-330847-a84pcc9z 42 2 Fig Fig NNP cord-330847-a84pcc9z 42 3 . . . cord-330847-a84pcc9z 43 1 1 1 LS cord-330847-a84pcc9z 43 2 ) ) -RRB- cord-330847-a84pcc9z 43 3 . . . cord-330847-a84pcc9z 44 1 Using use VBG cord-330847-a84pcc9z 44 2 an an DT cord-330847-a84pcc9z 44 3 M M NNP cord-330847-a84pcc9z 44 4 13 13 CD cord-330847-a84pcc9z 44 5 universal universal JJ cord-330847-a84pcc9z 44 6 primer primer NN cord-330847-a84pcc9z 44 7 , , , cord-330847-a84pcc9z 44 8 six six CD cord-330847-a84pcc9z 44 9 of of IN cord-330847-a84pcc9z 44 10 these these DT cord-330847-a84pcc9z 44 11 putative putative JJ cord-330847-a84pcc9z 44 12 CV17 CV17 NNP cord-330847-a84pcc9z 44 13 y y NNP cord-330847-a84pcc9z 44 14 clones clone NNS cord-330847-a84pcc9z 44 15 were be VBD cord-330847-a84pcc9z 44 16 then then RB cord-330847-a84pcc9z 44 17 sequenced sequence VBN cord-330847-a84pcc9z 44 18 in in IN cord-330847-a84pcc9z 44 19 the the DT cord-330847-a84pcc9z 44 20 region region NN cord-330847-a84pcc9z 44 21 of of IN cord-330847-a84pcc9z 44 22 the the DT cord-330847-a84pcc9z 44 23 cDNA cdna NN cord-330847-a84pcc9z 44 24 insert insert NN cord-330847-a84pcc9z 44 25 corresponding correspond VBG cord-330847-a84pcc9z 44 26 to to IN cord-330847-a84pcc9z 44 27 the the DT cord-330847-a84pcc9z 44 28 5'-end 5'-end CD cord-330847-a84pcc9z 44 29 of of IN cord-330847-a84pcc9z 44 30 CV17 CV17 NNP cord-330847-a84pcc9z 44 31 RNA RNA NNP cord-330847-a84pcc9z 44 32 y. y. NNP cord-330847-a84pcc9z 44 33 A a DT cord-330847-a84pcc9z 44 34 CV17 CV17 NNP cord-330847-a84pcc9z 45 1 ( ( -LRB- cord-330847-a84pcc9z 45 2 Y y NN cord-330847-a84pcc9z 45 3 clone clone NN cord-330847-a84pcc9z 45 4 was be VBD cord-330847-a84pcc9z 45 5 sequenced sequence VBN cord-330847-a84pcc9z 45 6 in in IN cord-330847-a84pcc9z 45 7 a a DT cord-330847-a84pcc9z 45 8 similar similar JJ cord-330847-a84pcc9z 45 9 manner manner NN cord-330847-a84pcc9z 45 10 and and CC cord-330847-a84pcc9z 45 11 also also RB cord-330847-a84pcc9z 45 12 by by IN cord-330847-a84pcc9z 45 13 direct direct JJ cord-330847-a84pcc9z 45 14 RNA RNA NNP cord-330847-a84pcc9z 45 15 sequencing sequencing NN cord-330847-a84pcc9z 45 16 with with IN cord-330847-a84pcc9z 45 17 reverse reverse JJ cord-330847-a84pcc9z 45 18 transcriptase transcriptase NN cord-330847-a84pcc9z 45 19 ( ( -LRB- cord-330847-a84pcc9z 45 20 4 4 CD cord-330847-a84pcc9z 45 21 ) ) -RRB- cord-330847-a84pcc9z 45 22 and and CC cord-330847-a84pcc9z 45 23 a a DT cord-330847-a84pcc9z 45 24 primer primer NN cord-330847-a84pcc9z 45 25 which which WDT cord-330847-a84pcc9z 45 26 bound bind VBN cord-330847-a84pcc9z 45 27 to to IN cord-330847-a84pcc9z 45 28 nt nt RB cord-330847-a84pcc9z 45 29 195 195 CD cord-330847-a84pcc9z 45 30 - - SYM cord-330847-a84pcc9z 45 31 209 209 CD cord-330847-a84pcc9z 45 32 ( ( -LRB- cord-330847-a84pcc9z 45 33 5'-CGTGCGAGCA 5'-cgtgcgagca CD cord-330847-a84pcc9z 45 34 - - HYPH cord-330847-a84pcc9z 45 35 CAGTA CAGTA NNP cord-330847-a84pcc9z 45 36 ) ) -RRB- cord-330847-a84pcc9z 45 37 . . . cord-330847-a84pcc9z 46 1 The the DT cord-330847-a84pcc9z 46 2 sequences sequence NNS cord-330847-a84pcc9z 46 3 of of IN cord-330847-a84pcc9z 46 4 all all DT cord-330847-a84pcc9z 46 5 six six CD cord-330847-a84pcc9z 46 6 y y NNP cord-330847-a84pcc9z 46 7 clones clone NNS cord-330847-a84pcc9z 46 8 were be VBD cord-330847-a84pcc9z 46 9 identical identical JJ cord-330847-a84pcc9z 46 10 for for IN cord-330847-a84pcc9z 46 11 at at IN cord-330847-a84pcc9z 46 12 least least JJS cord-330847-a84pcc9z 46 13 the the DT cord-330847-a84pcc9z 46 14 first first JJ cord-330847-a84pcc9z 46 15 100 100 CD cord-330847-a84pcc9z 46 16 nt nt NNS cord-330847-a84pcc9z 46 17 and and CC cord-330847-a84pcc9z 46 18 the the DT cord-330847-a84pcc9z 46 19 first first JJ cord-330847-a84pcc9z 46 20 70 70 CD cord-330847-a84pcc9z 46 21 nt nt NN cord-330847-a84pcc9z 46 22 of of IN cord-330847-a84pcc9z 46 23 these these DT cord-330847-a84pcc9z 46 24 cDNAs cDNAs NNPS cord-330847-a84pcc9z 46 25 matched match VBD cord-330847-a84pcc9z 46 26 the the DT cord-330847-a84pcc9z 46 27 5'-terminal70 5'-terminal70 CD cord-330847-a84pcc9z 46 28 nt nt RB cord-330847-a84pcc9z 46 29 of of IN cord-330847-a84pcc9z 46 30 CV17 CV17 NNP cord-330847-a84pcc9z 46 31 RNA RNA NNP cord-330847-a84pcc9z 46 32 CI CI NNP cord-330847-a84pcc9z 46 33 in in IN cord-330847-a84pcc9z 46 34 62 62 CD cord-330847-a84pcc9z 46 35 positions position NNS cord-330847-a84pcc9z 46 36 ( ( -LRB- cord-330847-a84pcc9z 46 37 Fig fig NN cord-330847-a84pcc9z 46 38 . . NNP cord-330847-a84pcc9z 46 39 2 2 CD cord-330847-a84pcc9z 46 40 ) ) -RRB- cord-330847-a84pcc9z 46 41 . . . cord-330847-a84pcc9z 47 1 However however RB cord-330847-a84pcc9z 47 2 , , , cord-330847-a84pcc9z 47 3 no no DT cord-330847-a84pcc9z 47 4 significant significant JJ cord-330847-a84pcc9z 47 5 sequence sequence NN cord-330847-a84pcc9z 47 6 alignment alignment NN cord-330847-a84pcc9z 47 7 could could MD cord-330847-a84pcc9z 47 8 be be VB cord-330847-a84pcc9z 47 9 made make VBN cord-330847-a84pcc9z 47 10 between between IN cord-330847-a84pcc9z 47 11 this this DT cord-330847-a84pcc9z 47 12 region region NN cord-330847-a84pcc9z 47 13 of of IN cord-330847-a84pcc9z 47 14 the the DT cord-330847-a84pcc9z 47 15 putative putative JJ cord-330847-a84pcc9z 47 16 CV17 CV17 NNP cord-330847-a84pcc9z 47 17 y y NNP cord-330847-a84pcc9z 47 18 cDNA cDNA NNP cord-330847-a84pcc9z 47 19 clones clone NNS cord-330847-a84pcc9z 47 20 and and CC cord-330847-a84pcc9z 47 21 the the DT cord-330847-a84pcc9z 47 22 first first JJ cord-330847-a84pcc9z 47 23 70 70 CD cord-330847-a84pcc9z 47 24 nt nt NN cord-330847-a84pcc9z 47 25 of of IN cord-330847-a84pcc9z 47 26 the the DT cord-330847-a84pcc9z 47 27 Type Type NNP cord-330847-a84pcc9z 47 28 strain strain NN cord-330847-a84pcc9z 47 29 RNA RNA NNP cord-330847-a84pcc9z 48 1 y. y. NN cord-330847-a84pcc9z 49 1 The the DT cord-330847-a84pcc9z 49 2 5 5 CD cord-330847-a84pcc9z 49 3 ' ' POS cord-330847-a84pcc9z 49 4 terminal terminal NN cord-330847-a84pcc9z 49 5 70 70 CD cord-330847-a84pcc9z 49 6 nt nt NN cord-330847-a84pcc9z 49 7 of of IN cord-330847-a84pcc9z 49 8 the the DT cord-330847-a84pcc9z 49 9 a a DT cord-330847-a84pcc9z 49 10 - - HYPH cord-330847-a84pcc9z 49 11 specific specific JJ cord-330847-a84pcc9z 49 12 sequence sequence NN cord-330847-a84pcc9z 49 13 in in IN cord-330847-a84pcc9z 49 14 the the DT cord-330847-a84pcc9z 49 15 CV17 CV17 NNP cord-330847-a84pcc9z 49 16 y y NN cord-330847-a84pcc9z 49 17 cDNAs cDNAs NNPS cord-330847-a84pcc9z 49 18 were be VBD cord-330847-a84pcc9z 49 19 followed follow VBN cord-330847-a84pcc9z 49 20 by by IN cord-330847-a84pcc9z 49 21 an an DT cord-330847-a84pcc9z 49 22 eight eight CD cord-330847-a84pcc9z 49 23 - - HYPH cord-330847-a84pcc9z 49 24 base base NN cord-330847-a84pcc9z 49 25 segment segment NN cord-330847-a84pcc9z 49 26 common common JJ cord-330847-a84pcc9z 49 27 to to IN cord-330847-a84pcc9z 49 28 both both DT cord-330847-a84pcc9z 49 29 CV17 CV17 NNPS cord-330847-a84pcc9z 49 30 a a DT cord-330847-a84pcc9z 49 31 ! ! , cord-330847-a84pcc9z 49 32 and and CC cord-330847-a84pcc9z 49 33 7 7 CD cord-330847-a84pcc9z 49 34 RNAs rna NNS cord-330847-a84pcc9z 49 35 . . . cord-330847-a84pcc9z 50 1 This this DT cord-330847-a84pcc9z 50 2 sequence sequence NN cord-330847-a84pcc9z 50 3 was be VBD cord-330847-a84pcc9z 50 4 , , , cord-330847-a84pcc9z 50 5 in in IN cord-330847-a84pcc9z 50 6 turn turn NN cord-330847-a84pcc9z 50 7 , , , cord-330847-a84pcc9z 50 8 followed follow VBN cord-330847-a84pcc9z 50 9 by by IN cord-330847-a84pcc9z 50 10 a a DT cord-330847-a84pcc9z 50 11 region region NN cord-330847-a84pcc9z 50 12 that that WDT cord-330847-a84pcc9z 50 13 is be VBZ cord-330847-a84pcc9z 50 14 identical identical JJ cord-330847-a84pcc9z 50 15 to to IN cord-330847-a84pcc9z 50 16 the the DT cord-330847-a84pcc9z 50 17 sequence sequence NN cord-330847-a84pcc9z 50 18 reported report VBN cord-330847-a84pcc9z 50 19 ( ( -LRB- cord-330847-a84pcc9z 50 20 4 4 CD cord-330847-a84pcc9z 50 21 ) ) -RRB- cord-330847-a84pcc9z 50 22 for for IN cord-330847-a84pcc9z 50 23 the the DT cord-330847-a84pcc9z 50 24 Type Type NNP cord-330847-a84pcc9z 50 25 strain strain NN cord-330847-a84pcc9z 50 26 RNA RNA NNP cord-330847-a84pcc9z 50 27 y y NN cord-330847-a84pcc9z 50 28 for for IN cord-330847-a84pcc9z 50 29 at at IN cord-330847-a84pcc9z 50 30 least least JJS cord-330847-a84pcc9z 50 31 an an DT cord-330847-a84pcc9z 50 32 additional additional JJ cord-330847-a84pcc9z 50 33 100 100 CD cord-330847-a84pcc9z 50 34 nt nt NN cord-330847-a84pcc9z 50 35 ( ( -LRB- cord-330847-a84pcc9z 50 36 Fig fig NN cord-330847-a84pcc9z 50 37 . . NNP cord-330847-a84pcc9z 50 38 2 2 CD cord-330847-a84pcc9z 50 39 ) ) -RRB- cord-330847-a84pcc9z 50 40 . . . cord-330847-a84pcc9z 51 1 Since since IN cord-330847-a84pcc9z 51 2 the the DT cord-330847-a84pcc9z 51 3 CV17 CV17 NNP cord-330847-a84pcc9z 51 4 RNA RNA NNP cord-330847-a84pcc9z 51 5 y y NNP cord-330847-a84pcc9z 51 6 contains contain VBZ cord-330847-a84pcc9z 51 7 a a DT cord-330847-a84pcc9z 51 8 ca ca NN cord-330847-a84pcc9z 51 9 . . . cord-330847-a84pcc9z 52 1 370-nt 370-nt CD cord-330847-a84pcc9z 53 1 tandem tandem JJ cord-330847-a84pcc9z 53 2 repeat repeat NN cord-330847-a84pcc9z 53 3 near near IN cord-330847-a84pcc9z 53 4 its -PRON- PRP$ cord-330847-a84pcc9z 53 5 5'-terminus 5'-terminus CD cord-330847-a84pcc9z 53 6 similar similar JJ cord-330847-a84pcc9z 53 7 to to IN cord-330847-a84pcc9z 53 8 that that DT cord-330847-a84pcc9z 53 9 described describe VBN cord-330847-a84pcc9z 53 10 for for IN cord-330847-a84pcc9z 53 11 the the DT cord-330847-a84pcc9z 53 12 Type Type NNP cord-330847-a84pcc9z 53 13 strain strain NN cord-330847-a84pcc9z 53 14 ( ( -LRB- cord-330847-a84pcc9z 53 15 4 4 CD cord-330847-a84pcc9z 53 16 ) ) -RRB- cord-330847-a84pcc9z 53 17 and and CC cord-330847-a84pcc9z 53 18 a a DT cord-330847-a84pcc9z 53 19 variant variant NN cord-330847-a84pcc9z 53 20 of of IN cord-330847-a84pcc9z 53 21 the the DT cord-330847-a84pcc9z 53 22 ND1 nd1 JJ cord-330847-a84pcc9z 53 23 8 8 CD cord-330847-a84pcc9z 53 24 strain strain NN cord-330847-a84pcc9z 53 25 ( ( -LRB- cord-330847-a84pcc9z 53 26 3 3 LS cord-330847-a84pcc9z 53 27 ) ) -RRB- cord-330847-a84pcc9z 53 28 the the DT cord-330847-a84pcc9z 53 29 authenticity authenticity NN cord-330847-a84pcc9z 53 30 of of IN cord-330847-a84pcc9z 53 31 the the DT cord-330847-a84pcc9z 53 32 CV17 CV17 NNP cord-330847-a84pcc9z 53 33 y y NNP cord-330847-a84pcc9z 53 34 cDNA cDNA NNP cord-330847-a84pcc9z 53 35 clones clone NNS cord-330847-a84pcc9z 53 36 was be VBD cord-330847-a84pcc9z 53 37 not not RB cord-330847-a84pcc9z 53 38 readily readily RB cord-330847-a84pcc9z 53 39 verifiable verifiable JJ cord-330847-a84pcc9z 53 40 by by IN cord-330847-a84pcc9z 53 41 direct direct JJ cord-330847-a84pcc9z 53 42 RNA RNA NNP cord-330847-a84pcc9z 53 43 sequencing sequencing NN cord-330847-a84pcc9z 53 44 . . . cord-330847-a84pcc9z 54 1 Instead instead RB cord-330847-a84pcc9z 54 2 , , , cord-330847-a84pcc9z 54 3 the the DT cord-330847-a84pcc9z 54 4 authenticity authenticity NN cord-330847-a84pcc9z 54 5 of of IN cord-330847-a84pcc9z 54 6 these these DT cord-330847-a84pcc9z 54 7 clones clone NNS cord-330847-a84pcc9z 54 8 was be VBD cord-330847-a84pcc9z 54 9 assessed assess VBN cord-330847-a84pcc9z 54 10 by by IN cord-330847-a84pcc9z 54 11 hybridization hybridization NN cord-330847-a84pcc9z 54 12 with with IN cord-330847-a84pcc9z 54 13 oligonucleotide oligonucleotide JJ cord-330847-a84pcc9z 54 14 probes probe NNS cord-330847-a84pcc9z 54 15 specific specific JJ cord-330847-a84pcc9z 54 16 for for IN cord-330847-a84pcc9z 54 17 CV17 CV17 NNP cord-330847-a84pcc9z 54 18 ( ( -LRB- cord-330847-a84pcc9z 54 19 Y Y NNP cord-330847-a84pcc9z 54 20 and and CC cord-330847-a84pcc9z 54 21 Type Type NNP cord-330847-a84pcc9z 54 22 y y NNP cord-330847-a84pcc9z 54 23 leader leader NN cord-330847-a84pcc9z 54 24 sequences sequence NNS cord-330847-a84pcc9z 54 25 . . . cord-330847-a84pcc9z 55 1 Northern northern JJ cord-330847-a84pcc9z 55 2 blots blot NNS cord-330847-a84pcc9z 55 3 of of IN cord-330847-a84pcc9z 55 4 native native JJ cord-330847-a84pcc9z 55 5 RNAs rna NNS cord-330847-a84pcc9z 55 6 of of IN cord-330847-a84pcc9z 55 7 BSMV BSMV NNP cord-330847-a84pcc9z 55 8 strains strain VBZ cord-330847-a84pcc9z 55 9 CV17 CV17 NNP cord-330847-a84pcc9z 55 10 , , , cord-330847-a84pcc9z 55 11 CV42 CV42 NNP cord-330847-a84pcc9z 55 12 , , , cord-330847-a84pcc9z 55 13 and and CC cord-330847-a84pcc9z 55 14 ND1 ND1 NNP cord-330847-a84pcc9z 55 15 8 8 CD cord-330847-a84pcc9z 55 16 and and CC cord-330847-a84pcc9z 55 17 Southern southern JJ cord-330847-a84pcc9z 55 18 blots blot NNS cord-330847-a84pcc9z 55 19 of of IN cord-330847-a84pcc9z 55 20 the the DT cord-330847-a84pcc9z 55 21 fifteen fifteen CD cord-330847-a84pcc9z 55 22 CV17 CV17 NNP cord-330847-a84pcc9z 55 23 y y NNP cord-330847-a84pcc9z 55 24 cDNA cDNA NNP cord-330847-a84pcc9z 55 25 clones clone NNS cord-330847-a84pcc9z 55 26 were be VBD cord-330847-a84pcc9z 55 27 prepared prepare VBN cord-330847-a84pcc9z 55 28 according accord VBG cord-330847-a84pcc9z 55 29 to to IN cord-330847-a84pcc9z 55 30 standard standard JJ cord-330847-a84pcc9z 55 31 protocols protocol NNS cord-330847-a84pcc9z 55 32 ( ( -LRB- cord-330847-a84pcc9z 55 33 1 1 CD cord-330847-a84pcc9z 55 34 I i NN cord-330847-a84pcc9z 55 35 ) ) -RRB- cord-330847-a84pcc9z 55 36 . . . cord-330847-a84pcc9z 56 1 Blots blot NNS cord-330847-a84pcc9z 56 2 were be VBD cord-330847-a84pcc9z 56 3 probed probe VBN cord-330847-a84pcc9z 56 4 with with IN cord-330847-a84pcc9z 56 5 either either CC cord-330847-a84pcc9z 56 6 an an DT cord-330847-a84pcc9z 56 7 QI QI NNP cord-330847-a84pcc9z 56 8 leader leader NN cord-330847-a84pcc9z 56 9 - - HYPH cord-330847-a84pcc9z 56 10 specific specific JJ cord-330847-a84pcc9z 56 11 ( ( -LRB- cord-330847-a84pcc9z 56 12 5'~AAGAATCGATTACGATTATG 5'~aagaatcgattacgattatg CD cord-330847-a84pcc9z 56 13 ) ) -RRB- cord-330847-a84pcc9z 56 14 or or CC cord-330847-a84pcc9z 56 15 a a DT cord-330847-a84pcc9z 56 16 y y NNP cord-330847-a84pcc9z 56 17 leader leader NN cord-330847-a84pcc9z 56 18 - - HYPH cord-330847-a84pcc9z 56 19 specific specific JJ cord-330847-a84pcc9z 56 20 ( ( -LRB- cord-330847-a84pcc9z 56 21 5'-TlTAGCGTTATlTGGCAAGC 5'-tltagcgttatltggcaagc CD cord-330847-a84pcc9z 56 22 ) ) -RRB- cord-330847-a84pcc9z 56 23 32P 32p CD cord-330847-a84pcc9z 56 24 - - HYPH cord-330847-a84pcc9z 56 25 end end NN cord-330847-a84pcc9z 56 26 - - HYPH cord-330847-a84pcc9z 56 27 labeled label VBN cord-330847-a84pcc9z 56 28 oligonucleotide oligonucleotide JJ cord-330847-a84pcc9z 56 29 probe probe NN cord-330847-a84pcc9z 56 30 complementary complementary JJ cord-330847-a84pcc9z 56 31 to to IN cord-330847-a84pcc9z 56 32 nt nt RB cord-330847-a84pcc9z 56 33 41 41 CD cord-330847-a84pcc9z 56 34 - - SYM cord-330847-a84pcc9z 56 35 60 60 CD cord-330847-a84pcc9z 56 36 of of IN cord-330847-a84pcc9z 56 37 the the DT cord-330847-a84pcc9z 56 38 CV17 CV17 NNP cord-330847-a84pcc9z 57 1 ( ( -LRB- cord-330847-a84pcc9z 57 2 Y Y NNP cord-330847-a84pcc9z 57 3 and and CC cord-330847-a84pcc9z 57 4 Type Type NNP cord-330847-a84pcc9z 57 5 y y NNP cord-330847-a84pcc9z 57 6 RNAs rna NNS cord-330847-a84pcc9z 57 7 , , , cord-330847-a84pcc9z 57 8 respectively respectively RB cord-330847-a84pcc9z 57 9 . . . cord-330847-a84pcc9z 58 1 Results result NNS cord-330847-a84pcc9z 58 2 evident evident JJ cord-330847-a84pcc9z 58 3 in in IN cord-330847-a84pcc9z 58 4 Fig Fig NNP cord-330847-a84pcc9z 58 5 . . . cord-330847-a84pcc9z 59 1 3 3 CD cord-330847-a84pcc9z 59 2 demonstrate demonstrate VBP cord-330847-a84pcc9z 59 3 that that IN cord-330847-a84pcc9z 59 4 native native JJ cord-330847-a84pcc9z 59 5 CV17 CV17 NNP cord-330847-a84pcc9z 59 6 y y NNP cord-330847-a84pcc9z 59 7 RNAs rna NNS cord-330847-a84pcc9z 59 8 typically typically RB cord-330847-a84pcc9z 59 9 possess possess VBP cord-330847-a84pcc9z 59 10 an an DT cord-330847-a84pcc9z 59 11 ( ( -LRB- cord-330847-a84pcc9z 59 12 Y Y NNP cord-330847-a84pcc9z 59 13 leader leader NN cord-330847-a84pcc9z 59 14 sequence sequence NN cord-330847-a84pcc9z 59 15 , , , cord-330847-a84pcc9z 59 16 as as IN cord-330847-a84pcc9z 59 17 do do VBP cord-330847-a84pcc9z 59 18 all all DT cord-330847-a84pcc9z 59 19 fifteen fifteen CD cord-330847-a84pcc9z 59 20 of of IN cord-330847-a84pcc9z 59 21 the the DT cord-330847-a84pcc9z 59 22 CV17 CV17 NNP cord-330847-a84pcc9z 59 23 y y NNP cord-330847-a84pcc9z 59 24 cDNA cDNA NNP cord-330847-a84pcc9z 59 25 clones clone NNS cord-330847-a84pcc9z 59 26 . . . cord-330847-a84pcc9z 60 1 Further further JJ cord-330847-a84pcc9z 60 2 verification verification NN cord-330847-a84pcc9z 60 3 of of IN cord-330847-a84pcc9z 60 4 the the DT cord-330847-a84pcc9z 60 5 authenticity authenticity NN cord-330847-a84pcc9z 60 6 of of IN cord-330847-a84pcc9z 60 7 the the DT cord-330847-a84pcc9z 60 8 CV17 CV17 NNP cord-330847-a84pcc9z 60 9 y y NNP cord-330847-a84pcc9z 60 10 cDNA cDNA NNP cord-330847-a84pcc9z 60 11 clones clone NNS cord-330847-a84pcc9z 60 12 was be VBD cord-330847-a84pcc9z 60 13 obtained obtain VBN cord-330847-a84pcc9z 60 14 by by IN cord-330847-a84pcc9z 60 15 infectivity infectivity NN cord-330847-a84pcc9z 60 16 assay assay NN cord-330847-a84pcc9z 60 17 . . . cord-330847-a84pcc9z 61 1 Capped capped JJ cord-330847-a84pcc9z 61 2 RNAs rna NNS cord-330847-a84pcc9z 61 3 were be VBD cord-330847-a84pcc9z 61 4 produced produce VBN cord-330847-a84pcc9z 61 5 by by IN cord-330847-a84pcc9z 61 6 in in FW cord-330847-a84pcc9z 61 7 vitro vitro FW cord-330847-a84pcc9z 61 8 transcription transcription NN cord-330847-a84pcc9z 61 9 of of IN cord-330847-a84pcc9z 61 10 four four CD cord-330847-a84pcc9z 61 11 of of IN cord-330847-a84pcc9z 61 12 the the DT cord-330847-a84pcc9z 61 13 CV17 CV17 NNP cord-330847-a84pcc9z 61 14 y y NNP cord-330847-a84pcc9z 61 15 cDNA cDNA NNP cord-330847-a84pcc9z 61 16 clones clone NNS cord-330847-a84pcc9z 61 17 exactly exactly RB cord-330847-a84pcc9z 61 18 as as RB cord-330847-a84pcc9z 61 19 previously previously RB cord-330847-a84pcc9z 61 20 described describe VBN cord-330847-a84pcc9z 61 21 ( ( -LRB- cord-330847-a84pcc9z 61 22 3 3 CD cord-330847-a84pcc9z 61 23 ) ) -RRB- cord-330847-a84pcc9z 61 24 . . . cord-330847-a84pcc9z 62 1 Each each DT cord-330847-a84pcc9z 62 2 was be VBD cord-330847-a84pcc9z 62 3 combined combine VBN cord-330847-a84pcc9z 62 4 with with IN cord-330847-a84pcc9z 62 5 in in FW cord-330847-a84pcc9z 62 6 vitro vitro FW cord-330847-a84pcc9z 62 7 transcripts transcript NNS cord-330847-a84pcc9z 62 8 of of IN cord-330847-a84pcc9z 62 9 either either CC cord-330847-a84pcc9z 62 10 CV17 CV17 NNP cord-330847-a84pcc9z 62 11 or or CC cord-330847-a84pcc9z 62 12 ND1 ND1 NNP cord-330847-a84pcc9z 62 13 8 8 CD cord-330847-a84pcc9z 62 14 ( ( -LRB- cord-330847-a84pcc9z 62 15 Y Y NNP cord-330847-a84pcc9z 62 16 and and CC cord-330847-a84pcc9z 62 17 CV17 CV17 NNP cord-330847-a84pcc9z 62 18 p p POS cord-330847-a84pcc9z 62 19 cDNA cdna NN cord-330847-a84pcc9z 62 20 clones clone NNS cord-330847-a84pcc9z 62 21 and and CC cord-330847-a84pcc9z 62 22 inoculated inoculate VBD cord-330847-a84pcc9z 62 23 onto onto IN cord-330847-a84pcc9z 62 24 5-to 5-to CD cord-330847-a84pcc9z 62 25 6-day 6-day JJ cord-330847-a84pcc9z 62 26 - - HYPH cord-330847-a84pcc9z 62 27 old old JJ cord-330847-a84pcc9z 62 28 barley barley NN cord-330847-a84pcc9z 62 29 seedlings seedling NNS cord-330847-a84pcc9z 62 30 . . . cord-330847-a84pcc9z 63 1 Inoculated inoculate VBN cord-330847-a84pcc9z 63 2 seedlings seedling NNS cord-330847-a84pcc9z 63 3 developed develop VBD cord-330847-a84pcc9z 63 4 symptoms symptom NNS cord-330847-a84pcc9z 63 5 typical typical JJ cord-330847-a84pcc9z 63 6 of of IN cord-330847-a84pcc9z 63 7 BSMV BSMV NNP cord-330847-a84pcc9z 63 8 infection infection NN cord-330847-a84pcc9z 63 9 within within IN cord-330847-a84pcc9z 63 10 4 4 CD cord-330847-a84pcc9z 63 11 to to TO cord-330847-a84pcc9z 63 12 7 7 CD cord-330847-a84pcc9z 63 13 days day NNS cord-330847-a84pcc9z 63 14 , , , cord-330847-a84pcc9z 63 15 thus thus RB cord-330847-a84pcc9z 63 16 verifying verify VBG cord-330847-a84pcc9z 63 17 that that IN cord-330847-a84pcc9z 63 18 these these DT cord-330847-a84pcc9z 63 19 CV17 CV17 NNP cord-330847-a84pcc9z 63 20 y y NNP cord-330847-a84pcc9z 63 21 cDNA cdna NN cord-330847-a84pcc9z 63 22 clones clone NNS cord-330847-a84pcc9z 63 23 represent represent VBP cord-330847-a84pcc9z 63 24 full full JJ cord-330847-a84pcc9z 63 25 - - HYPH cord-330847-a84pcc9z 63 26 length length NN cord-330847-a84pcc9z 63 27 and and CC cord-330847-a84pcc9z 63 28 biologically biologically RB cord-330847-a84pcc9z 63 29 active active JJ cord-330847-a84pcc9z 63 30 copies copy NNS cord-330847-a84pcc9z 63 31 of of IN cord-330847-a84pcc9z 63 32 CV17 CV17 NNP cord-330847-a84pcc9z 63 33 RNA RNA NNP cord-330847-a84pcc9z 63 34 y. y. NNP cord-330847-a84pcc9z 64 1 ( ( -LRB- cord-330847-a84pcc9z 64 2 Table table NN cord-330847-a84pcc9z 64 3 1 1 CD cord-330847-a84pcc9z 64 4 ) ) -RRB- cord-330847-a84pcc9z 65 1 Our -PRON- PRP$ cord-330847-a84pcc9z 65 2 results result NNS cord-330847-a84pcc9z 65 3 strongly strongly RB cord-330847-a84pcc9z 65 4 suggest suggest VBP cord-330847-a84pcc9z 65 5 that that IN cord-330847-a84pcc9z 65 6 RNA RNA NNP cord-330847-a84pcc9z 65 7 y y NNP cord-330847-a84pcc9z 65 8 of of IN cord-330847-a84pcc9z 65 9 BSMV BSMV NNP cord-330847-a84pcc9z 65 10 strain strain VB cord-330847-a84pcc9z 66 1 CV17 CV17 NNP cord-330847-a84pcc9z 66 2 is be VBZ cord-330847-a84pcc9z 66 3 a a DT cord-330847-a84pcc9z 66 4 naturally naturally RB cord-330847-a84pcc9z 66 5 occurring occur VBG cord-330847-a84pcc9z 66 6 product product NN cord-330847-a84pcc9z 66 7 of of IN cord-330847-a84pcc9z 66 8 recombination recombination NN cord-330847-a84pcc9z 66 9 between between IN cord-330847-a84pcc9z 66 10 RNAs rna NNS cord-330847-a84pcc9z 66 11 ( ( -LRB- cord-330847-a84pcc9z 66 12 Y Y NNP cord-330847-a84pcc9z 66 13 and and CC cord-330847-a84pcc9z 66 14 y. y. NNP cord-330847-a84pcc9z 67 1 Although although IN cord-330847-a84pcc9z 67 2 the the DT cord-330847-a84pcc9z 67 3 mechanism mechanism NN cord-330847-a84pcc9z 67 4 of of IN cord-330847-a84pcc9z 67 5 recombination recombination NN cord-330847-a84pcc9z 67 6 in in IN cord-330847-a84pcc9z 67 7 BSMV BSMV NNP cord-330847-a84pcc9z 67 8 is be VBZ cord-330847-a84pcc9z 67 9 not not RB cord-330847-a84pcc9z 67 10 known know VBN cord-330847-a84pcc9z 67 11 , , , cord-330847-a84pcc9z 67 12 two two CD cord-330847-a84pcc9z 67 13 possible possible JJ cord-330847-a84pcc9z 67 14 models model NNS cord-330847-a84pcc9z 67 15 for for IN cord-330847-a84pcc9z 67 16 RNA rna NN cord-330847-a84pcc9z 67 17 recombination recombination NN cord-330847-a84pcc9z 67 18 have have VBP cord-330847-a84pcc9z 67 19 been be VBN cord-330847-a84pcc9z 67 20 commonly commonly RB cord-330847-a84pcc9z 67 21 proposed propose VBN cord-330847-a84pcc9z 67 22 : : : cord-330847-a84pcc9z 67 23 ( ( -LRB- cord-330847-a84pcc9z 67 24 I i NN cord-330847-a84pcc9z 67 25 ) ) -RRB- cord-330847-a84pcc9z 67 26 template template NN cord-330847-a84pcc9z 67 27 switching switching NN cord-330847-a84pcc9z 67 28 ( ( -LRB- cord-330847-a84pcc9z 67 29 copy copy NN cord-330847-a84pcc9z 67 30 choice choice NN cord-330847-a84pcc9z 67 31 ) ) -RRB- cord-330847-a84pcc9z 67 32 and and CC cord-330847-a84pcc9z 67 33 ( ( -LRB- cord-330847-a84pcc9z 67 34 II II NNP cord-330847-a84pcc9z 67 35 ) ) -RRB- cord-330847-a84pcc9z 67 36 enzymatic enzymatic JJ cord-330847-a84pcc9z 67 37 cutting cutting NN cord-330847-a84pcc9z 67 38 / / SYM cord-330847-a84pcc9z 67 39 splicing splicing NN cord-330847-a84pcc9z 67 40 . . . cord-330847-a84pcc9z 68 1 Kirkegaard Kirkegaard NNP cord-330847-a84pcc9z 68 2 and and CC cord-330847-a84pcc9z 68 3 Baltimore Baltimore NNP cord-330847-a84pcc9z 68 4 ( ( -LRB- cord-330847-a84pcc9z 68 5 12 12 CD cord-330847-a84pcc9z 68 6 ) ) -RRB- cord-330847-a84pcc9z 68 7 provided provide VBD cord-330847-a84pcc9z 68 8 convincing convincing JJ cord-330847-a84pcc9z 68 9 evidence evidence NN cord-330847-a84pcc9z 68 10 for for IN cord-330847-a84pcc9z 68 11 a a DT cord-330847-a84pcc9z 68 12 copy copy NN cord-330847-a84pcc9z 68 13 choice choice NN cord-330847-a84pcc9z 68 14 mechanism mechanism NN cord-330847-a84pcc9z 68 15 of of IN cord-330847-a84pcc9z 68 16 poliovirus poliovirus NN cord-330847-a84pcc9z 68 17 recombination recombination NN cord-330847-a84pcc9z 68 18 ; ; : cord-330847-a84pcc9z 68 19 it -PRON- PRP cord-330847-a84pcc9z 68 20 appears appear VBZ cord-330847-a84pcc9z 68 21 likely likely JJ cord-330847-a84pcc9z 68 22 that that IN cord-330847-a84pcc9z 68 23 the the DT cord-330847-a84pcc9z 68 24 recombination recombination NN cord-330847-a84pcc9z 68 25 reported report VBN cord-330847-a84pcc9z 68 26 here here RB cord-330847-a84pcc9z 68 27 proceeded proceed VBD cord-330847-a84pcc9z 68 28 in in IN cord-330847-a84pcc9z 68 29 a a DT cord-330847-a84pcc9z 68 30 similar similar JJ cord-330847-a84pcc9z 68 31 manner manner NN cord-330847-a84pcc9z 68 32 . . . cord-330847-a84pcc9z 69 1 Although although IN cord-330847-a84pcc9z 69 2 template template NN cord-330847-a84pcc9z 69 3 switching switching NN cord-330847-a84pcc9z 69 4 may may MD cord-330847-a84pcc9z 69 5 occur occur VB cord-330847-a84pcc9z 69 6 in in IN cord-330847-a84pcc9z 69 7 the the DT cord-330847-a84pcc9z 69 8 absence absence NN cord-330847-a84pcc9z 69 9 of of IN cord-330847-a84pcc9z 69 10 sequence sequence NN cord-330847-a84pcc9z 69 11 homology homology NN cord-330847-a84pcc9z 69 12 , , , cord-330847-a84pcc9z 69 13 it -PRON- PRP cord-330847-a84pcc9z 69 14 should should MD cord-330847-a84pcc9z 69 15 be be VB cord-330847-a84pcc9z 69 16 noted note VBN cord-330847-a84pcc9z 69 17 that that IN cord-330847-a84pcc9z 69 18 a a DT cord-330847-a84pcc9z 69 19 short short JJ cord-330847-a84pcc9z 69 20 homologous homologous JJ cord-330847-a84pcc9z 69 21 sequence sequence NN cord-330847-a84pcc9z 69 22 at at IN cord-330847-a84pcc9z 69 23 10 10 CD cord-330847-a84pcc9z 69 24 20 20 CD cord-330847-a84pcc9z 69 25 30 30 CD cord-330847-a84pcc9z 69 26 _SP cord-330847-a84pcc9z 69 27 40 40 CD cord-330847-a84pcc9z 69 28 _SP cord-330847-a84pcc9z 69 29 50 50 CD cord-330847-a84pcc9z 69 30 _SP cord-330847-a84pcc9z 69 31 60 60 CD cord-330847-a84pcc9z 69 32 _SP cord-330847-a84pcc9z 69 33 70 70 CD cord-330847-a84pcc9z 69 34 _SP cord-330847-a84pcc9z 69 35 80 80 CD cord-330847-a84pcc9z 69 36 _SP cord-330847-a84pcc9z 69 37 90 90 CD cord-330847-a84pcc9z 69 38 _SP cord-330847-a84pcc9z 69 39 100 100 CD cord-330847-a84pcc9z 69 40 _SP cord-330847-a84pcc9z 69 41 110 110 CD cord-330847-a84pcc9z 69 42 _SP cord-330847-a84pcc9z 69 43 120 120 CD cord-330847-a84pcc9z 69 44 _SP cord-330847-a84pcc9z 69 45 130 130 CD cord-330847-a84pcc9z 69 46 _SP cord-330847-a84pcc9z 69 47 cv17a cv17a NN cord-330847-a84pcc9z 69 48 _SP cord-330847-a84pcc9z 69 49 CUAUGUAAGUUGCCUUUGGG CUAUGUAAGUUGCCUUUGGG NNP cord-330847-a84pcc9z 69 50 UGU UGU NNP cord-330847-a84pcc9z 69 51 AAAAUUUCUUGCAUGCACAUAAUCGUAA AAAAUUUCUUGCAUGCACAUAAUCGUAA NNP cord-330847-a84pcc9z 69 52 UCGAUUCUUCUUGAUCUCUAAACAACACUUUCCCGUUAGC UCGAUUCUUCUUGAUCUCUAAACAACACUUUCCCGUUAGC NNP cord-330847-a84pcc9z 69 53 ~ ~ NFP cord-330847-a84pcc9z 69 54 GCUAGCGAUGAGAUUGUCCGCAAUCUGAUCUCCCGUGAGAGGU GCUAGCGAUGAGAUUGUCCGCAAUCUGAUCUCCCGUGAGAGGU NNP cord-330847-a84pcc9z 69 55 _SP cord-330847-a84pcc9z 69 56 IIIIIIIIIIIIIIIIII IIIIIIIIIIIIIIIIII NNP cord-330847-a84pcc9z 69 57 _SP cord-330847-a84pcc9z 70 1 I -PRON- PRP cord-330847-a84pcc9z 71 1 II II NNP cord-330847-a84pcc9z 71 2 IIIII IIIII NNP cord-330847-a84pcc9z 71 3 IIII IIII NNP cord-330847-a84pcc9z 71 4 _SP cord-330847-a84pcc9z 72 1 III1 III1 NNP cord-330847-a84pcc9z 72 2 IIIIIIIIIII IIIIIIIIIII NNP cord-330847-a84pcc9z 72 3 _SP cord-330847-a84pcc9z 73 1 llIIIIllI llIIIIllI NNP cord-330847-a84pcc9z 73 2 _SP cord-330847-a84pcc9z 73 3 IIIIIII IIIIIII NNP cord-330847-a84pcc9z 73 4 _SP cord-330847-a84pcc9z 74 1 IIIIIIIII IIIIIIIII NNP cord-330847-a84pcc9z 74 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIlIIIIIIIIIIIIIIIIIIIIIIII iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiliiiiiiiiiiiiiiiiiiiiiiii POS cord-330847-a84pcc9z 74 3 _SP cord-330847-a84pcc9z 74 4 TYPE type NN cord-330847-a84pcc9z 74 5 , , , cord-330847-a84pcc9z 74 6 _SP cord-330847-a84pcc9z 74 7 GUAUAGCUUGAGCAUUACCGUCGUGUAAUUGCAACACUUGGCUUGCCAAAUAACGCUAAAGCGUUCACGAAACAAACAACAAUUCGGC~ GUAUAGCUUGAGCAUUACCGUCGUGUAAUUGCAACACUUGGCUUGCCAAAUAACGCUAAAGCGUUCACGAAACAAACAACAAUUCGGC~ NNP cord-330847-a84pcc9z 75 1 GAUGUUGUGAAGAAAUUCGCCGUCAUGUCAGUGACUGUAGUAGCAGGUC GAUGUUGUGAAGAAAUUCGCCGUCAUGUCAGUGACUGUAGUAGCAGGUC NNP cord-330847-a84pcc9z 75 2 _SP cord-330847-a84pcc9z 75 3 10 10 CD cord-330847-a84pcc9z 75 4 _SP cord-330847-a84pcc9z 75 5 20 20 CD cord-330847-a84pcc9z 75 6 _SP cord-330847-a84pcc9z 75 7 30 30 CD cord-330847-a84pcc9z 75 8 _SP cord-330847-a84pcc9z 75 9 40 40 CD cord-330847-a84pcc9z 75 10 _SP cord-330847-a84pcc9z 75 11 50 50 CD cord-330847-a84pcc9z 75 12 _SP cord-330847-a84pcc9z 75 13 60 60 CD cord-330847-a84pcc9z 75 14 _SP cord-330847-a84pcc9z 75 15 70 70 CD cord-330847-a84pcc9z 75 16 _SP cord-330847-a84pcc9z 76 1 80 80 CD cord-330847-a84pcc9z 76 2 _SP cord-330847-a84pcc9z 77 1 90 90 CD cord-330847-a84pcc9z 77 2 _SP cord-330847-a84pcc9z 78 1 100 100 CD cord-330847-a84pcc9z 78 2 _SP cord-330847-a84pcc9z 79 1 110 110 CD cord-330847-a84pcc9z 79 2 _SP cord-330847-a84pcc9z 80 1 120 120 CD cord-330847-a84pcc9z 80 2 _SP cord-330847-a84pcc9z 80 3 130 130 CD cord-330847-a84pcc9z 80 4 _SP cord-330847-a84pcc9z 80 5 140 140 CD cord-330847-a84pcc9z 80 6 FIG fig NN cord-330847-a84pcc9z 80 7 . . . cord-330847-a84pcc9z 81 1 2 2 LS cord-330847-a84pcc9z 81 2 . . . cord-330847-a84pcc9z 82 1 Comparison comparison NN cord-330847-a84pcc9z 82 2 of of IN cord-330847-a84pcc9z 82 3 the the DT cord-330847-a84pcc9z 82 4 5'termrnal 5'termrnal CD cord-330847-a84pcc9z 82 5 sequence sequence NN cord-330847-a84pcc9z 82 6 of of IN cord-330847-a84pcc9z 82 7 barley barley NN cord-330847-a84pcc9z 82 8 stripe stripe NN cord-330847-a84pcc9z 82 9 mosarc mosarc NNP cord-330847-a84pcc9z 82 10 vrrus vrrus NNP cord-330847-a84pcc9z 82 11 strarn strarn NNP cord-330847-a84pcc9z 82 12 CV17 CV17 NNP cord-330847-a84pcc9z 82 13 RNA RNA NNP cord-330847-a84pcc9z 82 14 y y NNP cord-330847-a84pcc9z 82 15 wrth wrth NNP cord-330847-a84pcc9z 82 16 that that IN cord-330847-a84pcc9z 82 17 of of IN cord-330847-a84pcc9z 82 18 CV17 CV17 NNP cord-330847-a84pcc9z 82 19 RNA RNA NNP cord-330847-a84pcc9z 82 20 CY CY NNP cord-330847-a84pcc9z 82 21 and and CC cord-330847-a84pcc9z 82 22 Type Type NNP cord-330847-a84pcc9z 82 23 strain strain NN cord-330847-a84pcc9z 83 1 RNA RNA NNP cord-330847-a84pcc9z 83 2 y. y. NNP cord-330847-a84pcc9z 83 3 Initiation Initiation NNP cord-330847-a84pcc9z 83 4 codons codon NNS cord-330847-a84pcc9z 83 5 for for IN cord-330847-a84pcc9z 83 6 the the DT cord-330847-a84pcc9z 83 7 cya cya NN cord-330847-a84pcc9z 84 1 and and CC cord-330847-a84pcc9z 84 2 ya ya PRP cord-330847-a84pcc9z 84 3 coding code VBG cord-330847-a84pcc9z 84 4 regions region NNS cord-330847-a84pcc9z 84 5 are be VBP cord-330847-a84pcc9z 84 6 underlrned underlrned JJ cord-330847-a84pcc9z 84 7 . . . cord-330847-a84pcc9z 85 1 Vertical vertical JJ cord-330847-a84pcc9z 85 2 bars bar NNS cord-330847-a84pcc9z 85 3 denote denote VBP cord-330847-a84pcc9z 85 4 homology homology NN cord-330847-a84pcc9z 85 5 between between IN cord-330847-a84pcc9z 85 6 sequences sequence NNS cord-330847-a84pcc9z 85 7 belreved belreve VBN cord-330847-a84pcc9z 85 8 to to TO cord-330847-a84pcc9z 85 9 be be VB cord-330847-a84pcc9z 85 10 evolutionarily evolutionarily RB cord-330847-a84pcc9z 85 11 related relate VBN cord-330847-a84pcc9z 85 12 . . . cord-330847-a84pcc9z 86 1 Asterisks asterisk NNS cord-330847-a84pcc9z 86 2 denote denote VBP cord-330847-a84pcc9z 86 3 nucleotide nucleotide JJ cord-330847-a84pcc9z 86 4 matches match NNS cord-330847-a84pcc9z 86 5 that that WDT cord-330847-a84pcc9z 86 6 may may MD cord-330847-a84pcc9z 86 7 have have VB cord-330847-a84pcc9z 86 8 ansen ansen VBN cord-330847-a84pcc9z 86 9 by by IN cord-330847-a84pcc9z 86 10 chance chance NN cord-330847-a84pcc9z 86 11 between between IN cord-330847-a84pcc9z 86 12 molecules molecule NNS cord-330847-a84pcc9z 86 13 believed believe VBN cord-330847-a84pcc9z 86 14 to to TO cord-330847-a84pcc9z 86 15 be be VB cord-330847-a84pcc9z 86 16 distinct distinct JJ cord-330847-a84pcc9z 86 17 . . . cord-330847-a84pcc9z 87 1 the the DT cord-330847-a84pcc9z 87 2 putative putative JJ cord-330847-a84pcc9z 87 3 crossover crossover NN cord-330847-a84pcc9z 87 4 point point NN cord-330847-a84pcc9z 87 5 is be VBZ cord-330847-a84pcc9z 87 6 present present JJ cord-330847-a84pcc9z 87 7 in in IN cord-330847-a84pcc9z 87 8 CV17 CV17 NNP cord-330847-a84pcc9z 87 9 RNAs rna NNS cord-330847-a84pcc9z 87 10 a a DT cord-330847-a84pcc9z 87 11 and and CC cord-330847-a84pcc9z 87 12 y y NN cord-330847-a84pcc9z 87 13 , , , cord-330847-a84pcc9z 87 14 but but CC cord-330847-a84pcc9z 87 15 not not RB cord-330847-a84pcc9z 87 16 in in IN cord-330847-a84pcc9z 87 17 RNA RNA NNP cord-330847-a84pcc9z 88 1 p. p. NN cord-330847-a84pcc9z 89 1 The the DT cord-330847-a84pcc9z 89 2 presence presence NN cord-330847-a84pcc9z 89 3 of of IN cord-330847-a84pcc9z 89 4 a a DT cord-330847-a84pcc9z 89 5 tandem tandem JJ cord-330847-a84pcc9z 89 6 repeat repeat NN cord-330847-a84pcc9z 89 7 in in IN cord-330847-a84pcc9z 89 8 CV17 CV17 NNP cord-330847-a84pcc9z 89 9 RNA RNA NNP cord-330847-a84pcc9z 89 10 y y NNP cord-330847-a84pcc9z 89 11 which which WDT cord-330847-a84pcc9z 89 12 is be VBZ cord-330847-a84pcc9z 89 13 similar similar JJ cord-330847-a84pcc9z 89 14 to to IN cord-330847-a84pcc9z 89 15 the the DT cord-330847-a84pcc9z 89 16 372-nt 372-nt CD cord-330847-a84pcc9z 89 17 tandem tandem NN cord-330847-a84pcc9z 89 18 repeat repeat NN cord-330847-a84pcc9z 89 19 present present JJ cord-330847-a84pcc9z 89 20 in in IN cord-330847-a84pcc9z 89 21 the the DT cord-330847-a84pcc9z 89 22 Type type NN cord-330847-a84pcc9z 89 23 strain strain NN cord-330847-a84pcc9z 90 1 y y NNP cord-330847-a84pcc9z 90 2 is be VBZ cord-330847-a84pcc9z 90 3 also also RB cord-330847-a84pcc9z 90 4 suggestive suggestive JJ cord-330847-a84pcc9z 90 5 of of IN cord-330847-a84pcc9z 90 6 a a DT cord-330847-a84pcc9z 90 7 copy copy NN cord-330847-a84pcc9z 90 8 choice choice NN cord-330847-a84pcc9z 90 9 mechanism mechanism NN cord-330847-a84pcc9z 90 10 . . . cord-330847-a84pcc9z 91 1 We -PRON- PRP cord-330847-a84pcc9z 91 2 have have VBP cord-330847-a84pcc9z 91 3 no no DT cord-330847-a84pcc9z 91 4 conclusive conclusive JJ cord-330847-a84pcc9z 91 5 explanation explanation NN cord-330847-a84pcc9z 91 6 for for IN cord-330847-a84pcc9z 91 7 the the DT cord-330847-a84pcc9z 91 8 minor minor JJ cord-330847-a84pcc9z 91 9 differences difference NNS cord-330847-a84pcc9z 91 10 observed observe VBN cord-330847-a84pcc9z 91 11 between between IN cord-330847-a84pcc9z 91 12 the the DT cord-330847-a84pcc9z 91 13 CV17 CV17 NNP cord-330847-a84pcc9z 91 14 01 01 CD cord-330847-a84pcc9z 91 15 and and CC cord-330847-a84pcc9z 91 16 y y NNP cord-330847-a84pcc9z 91 17 leader leader NN cord-330847-a84pcc9z 91 18 sequences sequence NNS cord-330847-a84pcc9z 91 19 . . . cord-330847-a84pcc9z 92 1 Considering consider VBG cord-330847-a84pcc9z 92 2 the the DT cord-330847-a84pcc9z 92 3 high high JJ cord-330847-a84pcc9z 92 4 degree degree NN cord-330847-a84pcc9z 92 5 of of IN cord-330847-a84pcc9z 92 6 sequence sequence NN cord-330847-a84pcc9z 92 7 conservation conservation NN cord-330847-a84pcc9z 92 8 among among IN cord-330847-a84pcc9z 92 9 BSMV BSMV NNP cord-330847-a84pcc9z 92 10 strains strain NNS cord-330847-a84pcc9z 92 11 ( ( -LRB- cord-330847-a84pcc9z 93 1 e.g. e.g. RB cord-330847-a84pcc9z 93 2 , , , cord-330847-a84pcc9z 93 3 the the DT cord-330847-a84pcc9z 93 4 ( ( -LRB- cord-330847-a84pcc9z 93 5 Y Y NNP cord-330847-a84pcc9z 93 6 leader leader NN cord-330847-a84pcc9z 93 7 sequences sequence NNS cord-330847-a84pcc9z 93 8 of of IN cord-330847-a84pcc9z 93 9 the the DT cord-330847-a84pcc9z 93 10 Type Type NNP cord-330847-a84pcc9z 93 11 and and CC cord-330847-a84pcc9z 93 12 CV17 CV17 NNP cord-330847-a84pcc9z 93 13 strains strain NNS cord-330847-a84pcc9z 93 14 differ differ VBP cord-330847-a84pcc9z 93 15 by by IN cord-330847-a84pcc9z 93 16 only only RB cord-330847-a84pcc9z 93 17 1 1 CD cord-330847-a84pcc9z 93 18 nt nt NN cord-330847-a84pcc9z 93 19 ) ) -RRB- cord-330847-a84pcc9z 93 20 , , , cord-330847-a84pcc9z 93 21 the the DT cord-330847-a84pcc9z 93 22 sequence sequence NN cord-330847-a84pcc9z 93 23 divergence divergence NN cord-330847-a84pcc9z 93 24 between between IN cord-330847-a84pcc9z 93 25 the the DT cord-330847-a84pcc9z 93 26 CV17 CV17 NNP cord-330847-a84pcc9z 93 27 ( ( -LRB- cord-330847-a84pcc9z 93 28 Y Y NNP cord-330847-a84pcc9z 93 29 and and CC cord-330847-a84pcc9z 93 30 y y NNP cord-330847-a84pcc9z 93 31 leaders leader NNS cord-330847-a84pcc9z 93 32 may may MD cord-330847-a84pcc9z 93 33 be be VB cord-330847-a84pcc9z 93 34 due due JJ cord-330847-a84pcc9z 93 35 to to IN cord-330847-a84pcc9z 93 36 selection selection NN cord-330847-a84pcc9z 93 37 for for IN cord-330847-a84pcc9z 93 38 ability ability NN cord-330847-a84pcc9z 93 39 to to TO cord-330847-a84pcc9z 93 40 replicate replicate VB cord-330847-a84pcc9z 93 41 rather rather RB cord-330847-a84pcc9z 93 42 than than IN cord-330847-a84pcc9z 93 43 random random JJ cord-330847-a84pcc9z 93 44 drift drift NN cord-330847-a84pcc9z 93 45 . . . cord-330847-a84pcc9z 94 1 The the DT cord-330847-a84pcc9z 94 2 normal normal JJ cord-330847-a84pcc9z 94 3 accumulation accumulation NN cord-330847-a84pcc9z 94 4 of of IN cord-330847-a84pcc9z 94 5 RNA RNA NNP cord-330847-a84pcc9z 94 6 y y NNP cord-330847-a84pcc9z 94 7 to to IN cord-330847-a84pcc9z 94 8 much much RB cord-330847-a84pcc9z 94 9 higher high JJR cord-330847-a84pcc9z 94 10 levels level NNS cord-330847-a84pcc9z 94 11 than than IN cord-330847-a84pcc9z 94 12 RNA RNA NNP cord-330847-a84pcc9z 94 13 QL QL NNP cord-330847-a84pcc9z 94 14 in in IN cord-330847-a84pcc9z 94 15 all all DT cord-330847-a84pcc9z 94 16 strains strain NNS cord-330847-a84pcc9z 94 17 studied study VBN cord-330847-a84pcc9z 94 18 thus thus RB cord-330847-a84pcc9z 94 19 far far RB cord-330847-a84pcc9z 94 20 , , , cord-330847-a84pcc9z 94 21 including include VBG cord-330847-a84pcc9z 94 22 CV17 CV17 NNP cord-330847-a84pcc9z 94 23 , , , cord-330847-a84pcc9z 94 24 is be VBZ cord-330847-a84pcc9z 94 25 an an DT cord-330847-a84pcc9z 94 26 indication indication NN cord-330847-a84pcc9z 94 27 that that IN cord-330847-a84pcc9z 94 28 differences difference NNS cord-330847-a84pcc9z 94 29 in in IN cord-330847-a84pcc9z 94 30 replication replication NN cord-330847-a84pcc9z 94 31 efficiency efficiency NN cord-330847-a84pcc9z 94 32 do do VBP cord-330847-a84pcc9z 94 33 exist exist VB cord-330847-a84pcc9z 94 34 among among IN cord-330847-a84pcc9z 94 35 these these DT cord-330847-a84pcc9z 94 36 RNAs rna NNS cord-330847-a84pcc9z 94 37 ( ( -LRB- cord-330847-a84pcc9z 94 38 Fig Fig NNP cord-330847-a84pcc9z 94 39 . . . cord-330847-a84pcc9z 94 40 3 3 CD cord-330847-a84pcc9z 94 41 ) ) -RRB- cord-330847-a84pcc9z 94 42 . . . cord-330847-a84pcc9z 95 1 Alternatively alternatively RB cord-330847-a84pcc9z 95 2 , , , cord-330847-a84pcc9z 95 3 natural natural JJ cord-330847-a84pcc9z 95 4 selection selection NN cord-330847-a84pcc9z 95 5 pressures pressure NNS cord-330847-a84pcc9z 95 6 on on IN cord-330847-a84pcc9z 95 7 RNA RNA NNP cord-330847-a84pcc9z 95 8 N N NNP cord-330847-a84pcc9z 95 9 may may MD cord-330847-a84pcc9z 95 10 not not RB cord-330847-a84pcc9z 95 11 apply apply VB cord-330847-a84pcc9z 95 12 to to IN cord-330847-a84pcc9z 95 13 RNA RNA NNP cord-330847-a84pcc9z 95 14 y y NNP cord-330847-a84pcc9z 95 15 , , , cord-330847-a84pcc9z 95 16 hence hence RB cord-330847-a84pcc9z 95 17 allowing allow VBG cord-330847-a84pcc9z 95 18 genetic genetic JJ cord-330847-a84pcc9z 95 19 drift drift NN cord-330847-a84pcc9z 95 20 of of IN cord-330847-a84pcc9z 95 21 the the DT cord-330847-a84pcc9z 95 22 two two CD cord-330847-a84pcc9z 95 23 leader leader NN cord-330847-a84pcc9z 95 24 se se '' cord-330847-a84pcc9z 95 25 - - HYPH cord-330847-a84pcc9z 95 26 quences quence NNS cord-330847-a84pcc9z 95 27 . . . cord-330847-a84pcc9z 96 1 As as IN cord-330847-a84pcc9z 96 2 a a DT cord-330847-a84pcc9z 96 3 result result NN cord-330847-a84pcc9z 96 4 of of IN cord-330847-a84pcc9z 96 5 this this DT cord-330847-a84pcc9z 96 6 divergence divergence NN cord-330847-a84pcc9z 96 7 , , , cord-330847-a84pcc9z 96 8 only only RB cord-330847-a84pcc9z 96 9 one one CD cord-330847-a84pcc9z 96 10 of of IN cord-330847-a84pcc9z 96 11 the the DT cord-330847-a84pcc9z 96 12 two two CD cord-330847-a84pcc9z 96 13 small small JJ cord-330847-a84pcc9z 96 14 overlapping overlap VBG cord-330847-a84pcc9z 96 15 ORFs orfs NN cord-330847-a84pcc9z 96 16 present present JJ cord-330847-a84pcc9z 96 17 in in IN cord-330847-a84pcc9z 96 18 the the DT cord-330847-a84pcc9z 96 19 CV17 CV17 NNP cord-330847-a84pcc9z 96 20 y y NNP cord-330847-a84pcc9z 96 21 leader leader NN cord-330847-a84pcc9z 96 22 is be VBZ cord-330847-a84pcc9z 96 23 present present JJ cord-330847-a84pcc9z 96 24 in in IN cord-330847-a84pcc9z 96 25 the the DT cord-330847-a84pcc9z 96 26 CV17 CV17 NNP cord-330847-a84pcc9z 96 27 N n CD cord-330847-a84pcc9z 96 28 leader leader NN cord-330847-a84pcc9z 96 29 . . . cord-330847-a84pcc9z 97 1 It -PRON- PRP cord-330847-a84pcc9z 97 2 has have VBZ cord-330847-a84pcc9z 97 3 been be VBN cord-330847-a84pcc9z 97 4 shown show VBN cord-330847-a84pcc9z 97 5 that that IN cord-330847-a84pcc9z 97 6 the the DT cord-330847-a84pcc9z 97 7 small small JJ cord-330847-a84pcc9z 97 8 y y NNP cord-330847-a84pcc9z 97 9 leader leader NN cord-330847-a84pcc9z 97 10 ORFs ORFs NNP cord-330847-a84pcc9z 97 11 play play VBP cord-330847-a84pcc9z 97 12 a a DT cord-330847-a84pcc9z 97 13 significant significant JJ cord-330847-a84pcc9z 97 14 role role NN cord-330847-a84pcc9z 97 15 in in IN cord-330847-a84pcc9z 97 16 the the DT cord-330847-a84pcc9z 97 17 efficiency efficiency NN cord-330847-a84pcc9z 97 18 of of IN cord-330847-a84pcc9z 97 19 in in FW cord-330847-a84pcc9z 97 20 vitro vitro FW cord-330847-a84pcc9z 97 21 translation translation NN cord-330847-a84pcc9z 97 22 of of IN cord-330847-a84pcc9z 97 23 the the DT cord-330847-a84pcc9z 97 24 CV17 CV17 NNP cord-330847-a84pcc9z 97 25 ya ya NNP cord-330847-a84pcc9z 97 26 gene gene NN cord-330847-a84pcc9z 97 27 and and CC cord-330847-a84pcc9z 97 28 can can MD cord-330847-a84pcc9z 97 29 affect affect VB cord-330847-a84pcc9z 97 30 systemic systemic JJ cord-330847-a84pcc9z 97 31 movement movement NN cord-330847-a84pcc9z 97 32 and and CC cord-330847-a84pcc9z 97 33 pathogenicity pathogenicity NN cord-330847-a84pcc9z 97 34 of of IN cord-330847-a84pcc9z 97 35 ND1 nd1 JJ cord-330847-a84pcc9z 97 36 8KV17 8kv17 CD cord-330847-a84pcc9z 97 37 pseudorecombinants pseudorecombinant NNS cord-330847-a84pcc9z 97 38 in in IN cord-330847-a84pcc9z 97 39 N. N. NNP cord-330847-a84pcc9z 97 40 benthamiana benthamiana NNP cord-330847-a84pcc9z 97 41 ( ( -LRB- cord-330847-a84pcc9z 97 42 8) 8) NNP cord-330847-a84pcc9z 97 43 . . . cord-330847-a84pcc9z 98 1 However however RB cord-330847-a84pcc9z 98 2 , , , cord-330847-a84pcc9z 98 3 the the DT cord-330847-a84pcc9z 98 4 N n CD cord-330847-a84pcc9z 98 5 origin origin NN cord-330847-a84pcc9z 98 6 of of IN cord-330847-a84pcc9z 98 7 these these DT cord-330847-a84pcc9z 98 8 small small JJ cord-330847-a84pcc9z 98 9 leader leader NN cord-330847-a84pcc9z 98 10 ORFs ORFs NNP cord-330847-a84pcc9z 98 11 is be VBZ cord-330847-a84pcc9z 98 12 not not RB cord-330847-a84pcc9z 98 13 significant significant JJ cord-330847-a84pcc9z 98 14 , , , cord-330847-a84pcc9z 98 15 since since IN cord-330847-a84pcc9z 98 16 the the DT cord-330847-a84pcc9z 98 17 Type Type NNP cord-330847-a84pcc9z 98 18 strain strain NN cord-330847-a84pcc9z 98 19 y y NNP cord-330847-a84pcc9z 98 20 leader leader NN cord-330847-a84pcc9z 98 21 also also RB cord-330847-a84pcc9z 98 22 contains contain VBZ cord-330847-a84pcc9z 98 23 a a DT cord-330847-a84pcc9z 98 24 small small JJ cord-330847-a84pcc9z 98 25 ORF orf NN cord-330847-a84pcc9z 98 26 with with IN cord-330847-a84pcc9z 98 27 unrelated unrelated JJ cord-330847-a84pcc9z 98 28 sequence sequence NN cord-330847-a84pcc9z 98 29 that that WDT cord-330847-a84pcc9z 98 30 has have VBZ cord-330847-a84pcc9z 98 31 a a DT cord-330847-a84pcc9z 98 32 similar similar JJ cord-330847-a84pcc9z 98 33 effect effect NN cord-330847-a84pcc9z 98 34 on on IN cord-330847-a84pcc9z 98 35 translation translation NN cord-330847-a84pcc9z 98 36 and and CC cord-330847-a84pcc9z 98 37 systemic systemic JJ cord-330847-a84pcc9z 98 38 movement movement NN cord-330847-a84pcc9z 98 39 ( ( -LRB- cord-330847-a84pcc9z 98 40 8) 8) NN cord-330847-a84pcc9z 98 41 . . . cord-330847-a84pcc9z 99 1 Thus thus RB cord-330847-a84pcc9z 99 2 , , , cord-330847-a84pcc9z 99 3 phenotypic phenotypic JJ cord-330847-a84pcc9z 99 4 effects effect NNS cord-330847-a84pcc9z 99 5 , , , cord-330847-a84pcc9z 99 6 if if IN cord-330847-a84pcc9z 99 7 any any DT cord-330847-a84pcc9z 99 8 , , , cord-330847-a84pcc9z 99 9 resulting result VBG cord-330847-a84pcc9z 99 10 from from IN cord-330847-a84pcc9z 99 11 recombination recombination NN cord-330847-a84pcc9z 99 12 of of IN cord-330847-a84pcc9z 99 13 the the DT cord-330847-a84pcc9z 99 14 CV17 CV17 NNP cord-330847-a84pcc9z 99 15 RNA RNA NNP cord-330847-a84pcc9z 99 16 01 01 CD cord-330847-a84pcc9z 99 17 and and CC cord-330847-a84pcc9z 99 18 y y NNP cord-330847-a84pcc9z 99 19 leader leader NN cord-330847-a84pcc9z 99 20 regions region NNS cord-330847-a84pcc9z 99 21 have have VBP cord-330847-a84pcc9z 99 22 not not RB cord-330847-a84pcc9z 99 23 yet yet RB cord-330847-a84pcc9z 99 24 been be VBN cord-330847-a84pcc9z 99 25 observed observe VBN cord-330847-a84pcc9z 99 26 . . . cord-330847-a84pcc9z 100 1 Substantial substantial JJ cord-330847-a84pcc9z 100 2 evidence evidence NN cord-330847-a84pcc9z 100 3 for for IN cord-330847-a84pcc9z 100 4 the the DT cord-330847-a84pcc9z 100 5 occurrence occurrence NN cord-330847-a84pcc9z 100 6 of of IN cord-330847-a84pcc9z 100 7 RNA RNA NNP cord-330847-a84pcc9z 100 8 recombination recombination NN cord-330847-a84pcc9z 100 9 now now RB cord-330847-a84pcc9z 100 10 exists exist VBZ cord-330847-a84pcc9z 100 11 . . . cord-330847-a84pcc9z 101 1 Recombination recombination NN cord-330847-a84pcc9z 101 2 has have VBZ cord-330847-a84pcc9z 101 3 been be VBN cord-330847-a84pcc9z 101 4 well well RB cord-330847-a84pcc9z 101 5 documented document VBN cord-330847-a84pcc9z 101 6 in in IN cord-330847-a84pcc9z 101 7 RNA RNA NNP cord-330847-a84pcc9z 101 8 viruses virus NNS cord-330847-a84pcc9z 101 9 , , , cord-330847-a84pcc9z 101 10 especially especially RB cord-330847-a84pcc9z 101 11 the the DT cord-330847-a84pcc9z 101 12 picornavrruses picornavrruse NNS cord-330847-a84pcc9z 101 13 , , , cord-330847-a84pcc9z 101 14 coronavrruses coronavrruse NNS cord-330847-a84pcc9z 101 15 , , , cord-330847-a84pcc9z 101 16 and and CC cord-330847-a84pcc9z 101 17 alphaviruses alphaviruses NNP cord-330847-a84pcc9z 101 18 ( ( -LRB- cord-330847-a84pcc9z 101 19 12 12 CD cord-330847-a84pcc9z 101 20 - - SYM cord-330847-a84pcc9z 101 21 15 15 CD cord-330847-a84pcc9z 101 22 ) ) -RRB- cord-330847-a84pcc9z 101 23 . . . cord-330847-a84pcc9z 102 1 Altered alter VBN cord-330847-a84pcc9z 102 2 pathogenicity pathogenicity NN cord-330847-a84pcc9z 102 3 as as IN cord-330847-a84pcc9z 102 4 a a DT cord-330847-a84pcc9z 102 5 result result NN cord-330847-a84pcc9z 102 6 of of IN cord-330847-a84pcc9z 102 7 rncorporation rncorporation NN cord-330847-a84pcc9z 102 8 of of IN cord-330847-a84pcc9z 102 9 host host NN cord-330847-a84pcc9z 102 10 1 1 CD cord-330847-a84pcc9z 102 11 2 2 CD cord-330847-a84pcc9z 102 12 3 3 CD cord-330847-a84pcc9z 102 13 4 4 CD cord-330847-a84pcc9z 102 14 5 5 CD cord-330847-a84pcc9z 102 15 6 6 CD cord-330847-a84pcc9z 102 16 7 7 CD cord-330847-a84pcc9z 102 17 8 8 CD cord-330847-a84pcc9z 102 18 9 9 CD cord-330847-a84pcc9z 103 1 1011 1011 CD cord-330847-a84pcc9z 103 2 12 12 CD cord-330847-a84pcc9z 103 3 1314 1314 CD cord-330847-a84pcc9z 104 1 151617 151617 CD cord-330847-a84pcc9z 104 2 18 18 CD cord-330847-a84pcc9z 104 3 FIG fig NN cord-330847-a84pcc9z 104 4 . . . cord-330847-a84pcc9z 105 1 3 3 LS cord-330847-a84pcc9z 105 2 . . . cord-330847-a84pcc9z 105 3 ldentrfrcatron ldentrfrcatron NNP cord-330847-a84pcc9z 105 4 of of IN cord-330847-a84pcc9z 105 5 barley barley NNP cord-330847-a84pcc9z 105 6 stripe stripe NNP cord-330847-a84pcc9z 105 7 mosaic mosaic NNP cord-330847-a84pcc9z 105 8 virus virus NN cord-330847-a84pcc9z 105 9 strarn strarn NNP cord-330847-a84pcc9z 105 10 CV17 CV17 NNP cord-330847-a84pcc9z 105 11 LY LY NNP cord-330847-a84pcc9z 105 12 and and CC cord-330847-a84pcc9z 105 13 Type Type NNP cord-330847-a84pcc9z 105 14 strain strain NN cord-330847-a84pcc9z 105 15 y y NN cord-330847-a84pcc9z 105 16 - - HYPH cord-330847-a84pcc9z 105 17 specific specific JJ cord-330847-a84pcc9z 105 18 leader leader NN cord-330847-a84pcc9z 105 19 sequences sequence NNS cord-330847-a84pcc9z 106 1 In in IN cord-330847-a84pcc9z 106 2 15 15 CD cord-330847-a84pcc9z 106 3 putative putative JJ cord-330847-a84pcc9z 106 4 CV17 CV17 NNP cord-330847-a84pcc9z 106 5 y y NNP cord-330847-a84pcc9z 106 6 cDNA cDNA NNP cord-330847-a84pcc9z 106 7 clones clone NNS cord-330847-a84pcc9z 106 8 and and CC cord-330847-a84pcc9z 106 9 native native JJ cord-330847-a84pcc9z 106 10 RNAs rna NNS cord-330847-a84pcc9z 106 11 of of IN cord-330847-a84pcc9z 106 12 strains strain NNS cord-330847-a84pcc9z 106 13 CV17 CV17 NNP cord-330847-a84pcc9z 106 14 , , , cord-330847-a84pcc9z 106 15 CV42 CV42 NNP cord-330847-a84pcc9z 106 16 , , , cord-330847-a84pcc9z 106 17 and and CC cord-330847-a84pcc9z 106 18 ND1 ND1 NNP cord-330847-a84pcc9z 106 19 8 8 CD cord-330847-a84pcc9z 106 20 . . . cord-330847-a84pcc9z 107 1 ( ( -LRB- cord-330847-a84pcc9z 107 2 A a DT cord-330847-a84pcc9z 107 3 ) ) -RRB- cord-330847-a84pcc9z 107 4 Southern southern JJ cord-330847-a84pcc9z 107 5 blot blot NN cord-330847-a84pcc9z 107 6 of of IN cord-330847-a84pcc9z 107 7 15 15 CD cord-330847-a84pcc9z 107 8 putative putative JJ cord-330847-a84pcc9z 107 9 BSMV BSMV NNP cord-330847-a84pcc9z 107 10 strain strain VB cord-330847-a84pcc9z 107 11 CV17 CV17 NNP cord-330847-a84pcc9z 107 12 7 7 CD cord-330847-a84pcc9z 107 13 cDNA cdna NN cord-330847-a84pcc9z 107 14 clones clone NNS cord-330847-a84pcc9z 107 15 ( ( -LRB- cord-330847-a84pcc9z 107 16 lanes lane NNS cord-330847-a84pcc9z 107 17 1-l 1-l CD cord-330847-a84pcc9z 107 18 5 5 CD cord-330847-a84pcc9z 107 19 ) ) -RRB- cord-330847-a84pcc9z 107 20 , , , cord-330847-a84pcc9z 107 21 a a DT cord-330847-a84pcc9z 107 22 Type Type NNP cord-330847-a84pcc9z 107 23 strain strain NN cord-330847-a84pcc9z 107 24 y y NNP cord-330847-a84pcc9z 107 25 cDNA cdna NN cord-330847-a84pcc9z 107 26 clone clone NNP cord-330847-a84pcc9z 107 27 ( ( -LRB- cord-330847-a84pcc9z 107 28 lane lane NNP cord-330847-a84pcc9z 107 29 16 16 CD cord-330847-a84pcc9z 107 30 ) ) -RRB- cord-330847-a84pcc9z 107 31 , , , cord-330847-a84pcc9z 107 32 and and CC cord-330847-a84pcc9z 107 33 a a DT cord-330847-a84pcc9z 107 34 CV17 CV17 NNP cord-330847-a84pcc9z 107 35 u u NNP cord-330847-a84pcc9z 107 36 cDNA cdna NN cord-330847-a84pcc9z 107 37 clone clone NN cord-330847-a84pcc9z 107 38 ( ( -LRB- cord-330847-a84pcc9z 107 39 lanes lane NNS cord-330847-a84pcc9z 107 40 17-l 17-l CD cord-330847-a84pcc9z 107 41 8) 8) NNP cord-330847-a84pcc9z 107 42 hybndrzed hybndrze VBD cord-330847-a84pcc9z 107 43 to to IN cord-330847-a84pcc9z 107 44 an an DT cord-330847-a84pcc9z 107 45 LY LY NNP cord-330847-a84pcc9z 107 46 leader leader NN cord-330847-a84pcc9z 107 47 - - HYPH cord-330847-a84pcc9z 107 48 specrfrc specrfrc NNP cord-330847-a84pcc9z 107 49 olrgonucleotrde olrgonucleotrde NNP cord-330847-a84pcc9z 107 50 probe probe NN cord-330847-a84pcc9z 107 51 . . . cord-330847-a84pcc9z 108 1 Plasmrd Plasmrd NNP cord-330847-a84pcc9z 108 2 DNAs dna NNS cord-330847-a84pcc9z 108 3 in in IN cord-330847-a84pcc9z 108 4 lanes lane NNS cord-330847-a84pcc9z 108 5 l l NNP cord-330847-a84pcc9z 108 6 - - HYPH cord-330847-a84pcc9z 108 7 l l NNP cord-330847-a84pcc9z 108 8 7 7 CD cord-330847-a84pcc9z 108 9 were be VBD cord-330847-a84pcc9z 108 10 lrneanzed lrneanze VBN cord-330847-a84pcc9z 108 11 with with IN cord-330847-a84pcc9z 108 12 il il NNP cord-330847-a84pcc9z 108 13 / / SYM cord-330847-a84pcc9z 108 14 l l NNP cord-330847-a84pcc9z 108 15 / / SYM cord-330847-a84pcc9z 108 16 ul ul NN cord-330847-a84pcc9z 108 17 . . . cord-330847-a84pcc9z 109 1 ( ( -LRB- cord-330847-a84pcc9z 109 2 B b NN cord-330847-a84pcc9z 109 3 ) ) -RRB- cord-330847-a84pcc9z 109 4 Southern southern JJ cord-330847-a84pcc9z 109 5 blot blot VBP cord-330847-a84pcc9z 109 6 identical identical JJ cord-330847-a84pcc9z 109 7 to to IN cord-330847-a84pcc9z 109 8 A A NNP cord-330847-a84pcc9z 109 9 , , , cord-330847-a84pcc9z 109 10 except except IN cord-330847-a84pcc9z 109 11 that that IN cord-330847-a84pcc9z 109 12 the the DT cord-330847-a84pcc9z 109 13 olrgonucleotide olrgonucleotide NN cord-330847-a84pcc9z 109 14 probe probe NN cord-330847-a84pcc9z 109 15 used use VBN cord-330847-a84pcc9z 109 16 was be VBD cord-330847-a84pcc9z 109 17 y y NNP cord-330847-a84pcc9z 109 18 leader leader NN cord-330847-a84pcc9z 109 19 - - HYPH cord-330847-a84pcc9z 109 20 specific specific JJ cord-330847-a84pcc9z 109 21 . . . cord-330847-a84pcc9z 110 1 ( ( -LRB- cord-330847-a84pcc9z 110 2 C C NNP cord-330847-a84pcc9z 110 3 ) ) -RRB- cord-330847-a84pcc9z 110 4 Northern northern JJ cord-330847-a84pcc9z 110 5 blot blot NN cord-330847-a84pcc9z 110 6 of of IN cord-330847-a84pcc9z 110 7 natrve natrve NN cord-330847-a84pcc9z 110 8 RNAs rna NNS cord-330847-a84pcc9z 110 9 from from IN cord-330847-a84pcc9z 110 10 BSMV BSMV NNP cord-330847-a84pcc9z 110 11 strains strain VBZ cord-330847-a84pcc9z 110 12 CV17 CV17 NNP cord-330847-a84pcc9z 110 13 , , , cord-330847-a84pcc9z 110 14 CV42 CV42 NNP cord-330847-a84pcc9z 110 15 , , , cord-330847-a84pcc9z 110 16 and and CC cord-330847-a84pcc9z 110 17 ND1 ND1 NNP cord-330847-a84pcc9z 110 18 8 8 CD cord-330847-a84pcc9z 110 19 hybridized hybridize VBD cord-330847-a84pcc9z 110 20 to to IN cord-330847-a84pcc9z 110 21 the the DT cord-330847-a84pcc9z 110 22 same same JJ cord-330847-a84pcc9z 110 23 ( ( -LRB- cord-330847-a84pcc9z 110 24 Y Y NNP cord-330847-a84pcc9z 110 25 leader leader NN cord-330847-a84pcc9z 110 26 - - HYPH cord-330847-a84pcc9z 110 27 specrfic specrfic NN cord-330847-a84pcc9z 110 28 probe probe NN cord-330847-a84pcc9z 110 29 as as IN cord-330847-a84pcc9z 110 30 In in IN cord-330847-a84pcc9z 110 31 A. a. NN cord-330847-a84pcc9z 111 1 They -PRON- PRP cord-330847-a84pcc9z 111 2 RNAs rna NNS cord-330847-a84pcc9z 111 3 of of IN cord-330847-a84pcc9z 111 4 CV17 CV17 NNP cord-330847-a84pcc9z 111 5 and and CC cord-330847-a84pcc9z 111 6 CV42 CV42 NNP cord-330847-a84pcc9z 111 7 are be VBP cord-330847-a84pcc9z 111 8 each each DT cord-330847-a84pcc9z 111 9 3.2 3.2 CD cord-330847-a84pcc9z 111 10 kb kb NNP cord-330847-a84pcc9z 111 11 in in IN cord-330847-a84pcc9z 111 12 size size NN cord-330847-a84pcc9z 111 13 and and CC cord-330847-a84pcc9z 111 14 comrgrate comrgrate VB cord-330847-a84pcc9z 111 15 with with IN cord-330847-a84pcc9z 111 16 RNA RNA NNP cord-330847-a84pcc9z 111 17 fi fi NNP cord-330847-a84pcc9z 111 18 ( ( -LRB- cord-330847-a84pcc9z 111 19 arrow arrow NN cord-330847-a84pcc9z 111 20 labeled label VBN cord-330847-a84pcc9z 111 21 fly fly NN cord-330847-a84pcc9z 111 22 ) ) -RRB- cord-330847-a84pcc9z 111 23 ; ; : cord-330847-a84pcc9z 111 24 ND1 ND1 NNP cord-330847-a84pcc9z 111 25 8 8 CD cord-330847-a84pcc9z 111 26 RNA RNA NNP cord-330847-a84pcc9z 111 27 y y NNP cord-330847-a84pcc9z 111 28 IS be VBZ cord-330847-a84pcc9z 111 29 2.8 2.8 CD cord-330847-a84pcc9z 111 30 kb kb NNP cord-330847-a84pcc9z 112 1 In in IN cord-330847-a84pcc9z 112 2 size size NN cord-330847-a84pcc9z 112 3 ( ( -LRB- cord-330847-a84pcc9z 112 4 arrow arrow NN cord-330847-a84pcc9z 112 5 labeled label VBN cord-330847-a84pcc9z 112 6 y y NNP cord-330847-a84pcc9z 112 7 ) ) -RRB- cord-330847-a84pcc9z 112 8 . . . cord-330847-a84pcc9z 113 1 ( ( -LRB- cord-330847-a84pcc9z 113 2 0 0 NFP cord-330847-a84pcc9z 113 3 ) ) -RRB- cord-330847-a84pcc9z 114 1 Northern northern JJ cord-330847-a84pcc9z 114 2 blot blot NN cord-330847-a84pcc9z 115 1 Identical identical JJ cord-330847-a84pcc9z 115 2 to to IN cord-330847-a84pcc9z 115 3 C C NNP cord-330847-a84pcc9z 115 4 , , , cord-330847-a84pcc9z 115 5 except except IN cord-330847-a84pcc9z 115 6 that that IN cord-330847-a84pcc9z 115 7 the the DT cord-330847-a84pcc9z 115 8 y y NNP cord-330847-a84pcc9z 115 9 leader leader NN cord-330847-a84pcc9z 115 10 - - HYPH cord-330847-a84pcc9z 115 11 specific specific JJ cord-330847-a84pcc9z 115 12 olrgonucleotrde olrgonucleotrde NN cord-330847-a84pcc9z 115 13 probe probe NN cord-330847-a84pcc9z 115 14 was be VBD cord-330847-a84pcc9z 115 15 used use VBN cord-330847-a84pcc9z 115 16 . . . cord-330847-a84pcc9z 116 1 Hybrrdrzatrons hybrrdrzatron NNS cord-330847-a84pcc9z 116 2 were be VBD cord-330847-a84pcc9z 116 3 performed perform VBN cord-330847-a84pcc9z 116 4 In in IN cord-330847-a84pcc9z 116 5 6X 6x CD cord-330847-a84pcc9z 116 6 SSPE SSPE NNP cord-330847-a84pcc9z 116 7 t t NNP cord-330847-a84pcc9z 116 8 I I NNP cord-330847-a84pcc9z 116 9 % % NN cord-330847-a84pcc9z 116 10 SDS SDS NNP cord-330847-a84pcc9z 116 11 at at IN cord-330847-a84pcc9z 116 12 54 54 CD cord-330847-a84pcc9z 116 13 " " `` cord-330847-a84pcc9z 116 14 for for IN cord-330847-a84pcc9z 116 15 the the DT cord-330847-a84pcc9z 116 16 N n CD cord-330847-a84pcc9z 116 17 leader leader NN cord-330847-a84pcc9z 116 18 - - HYPH cord-330847-a84pcc9z 116 19 specific specific JJ cord-330847-a84pcc9z 116 20 probe probe NN cord-330847-a84pcc9z 116 21 and and CC cord-330847-a84pcc9z 116 22 at at IN cord-330847-a84pcc9z 116 23 58 58 CD cord-330847-a84pcc9z 116 24 " " `` cord-330847-a84pcc9z 116 25 for for IN cord-330847-a84pcc9z 116 26 the the DT cord-330847-a84pcc9z 116 27 y y NNP cord-330847-a84pcc9z 116 28 leader leader NN cord-330847-a84pcc9z 116 29 - - HYPH cord-330847-a84pcc9z 116 30 specific specific JJ cord-330847-a84pcc9z 116 31 probe probe NN cord-330847-a84pcc9z 116 32 ( ( -LRB- cord-330847-a84pcc9z 116 33 T t NN cord-330847-a84pcc9z 116 34 , , , cord-330847-a84pcc9z 116 35 = = SYM cord-330847-a84pcc9z 116 36 T T NNP cord-330847-a84pcc9z 116 37 , , , cord-330847-a84pcc9z 116 38 , , , cord-330847-a84pcc9z 116 39 -9 -9 NNP cord-330847-a84pcc9z 116 40 " " '' cord-330847-a84pcc9z 116 41 ) ) -RRB- cord-330847-a84pcc9z 116 42 . . . cord-330847-a84pcc9z 117 1 a a DT cord-330847-a84pcc9z 117 2 Black Black NNP cord-330847-a84pcc9z 117 3 Hulless Hulless NNP cord-330847-a84pcc9z 117 4 barley barley NN cord-330847-a84pcc9z 117 5 plants plant NNS cord-330847-a84pcc9z 117 6 were be VBD cord-330847-a84pcc9z 117 7 inoculated inoculate VBN cord-330847-a84pcc9z 117 8 with with IN cord-330847-a84pcc9z 117 9 a a DT cord-330847-a84pcc9z 117 10 mixture mixture NN cord-330847-a84pcc9z 117 11 of of IN cord-330847-a84pcc9z 117 12 in in FW cord-330847-a84pcc9z 117 13 vitro vitro FW cord-330847-a84pcc9z 117 14 transcripts transcript NNS cord-330847-a84pcc9z 117 15 from from IN cord-330847-a84pcc9z 117 16 cDNA cdna NN cord-330847-a84pcc9z 117 17 clones clone NNS cord-330847-a84pcc9z 117 18 of of IN cord-330847-a84pcc9z 117 19 both both CC cord-330847-a84pcc9z 117 20 the the DT cord-330847-a84pcc9z 117 21 ND18 ND18 NNP cord-330847-a84pcc9z 117 22 and and CC cord-330847-a84pcc9z 117 23 CV17 CV17 NNP cord-330847-a84pcc9z 117 24 strains strain NNS cord-330847-a84pcc9z 117 25 suspended suspend VBN cord-330847-a84pcc9z 117 26 in in IN cord-330847-a84pcc9z 117 27 GKP GKP NNP cord-330847-a84pcc9z 117 28 buffer buffer NN cord-330847-a84pcc9z 117 29 ( ( -LRB- cord-330847-a84pcc9z 117 30 50 50 CD cord-330847-a84pcc9z 117 31 mM mm CD cord-330847-a84pcc9z 117 32 glycine glycine NN cord-330847-a84pcc9z 117 33 , , , cord-330847-a84pcc9z 117 34 30 30 CD cord-330847-a84pcc9z 117 35 mM mm CD cord-330847-a84pcc9z 117 36 K K NNP cord-330847-a84pcc9z 117 37 , , , cord-330847-a84pcc9z 117 38 HPO HPO NNP cord-330847-a84pcc9z 117 39 , , , cord-330847-a84pcc9z 117 40 pH pH NNP cord-330847-a84pcc9z 117 41 9.2 9.2 CD cord-330847-a84pcc9z 117 42 , , , cord-330847-a84pcc9z 117 43 1 1 CD cord-330847-a84pcc9z 117 44 % % NN cord-330847-a84pcc9z 117 45 bentonite bentonite NN cord-330847-a84pcc9z 117 46 , , , cord-330847-a84pcc9z 117 47 1 1 CD cord-330847-a84pcc9z 117 48 % % NN cord-330847-a84pcc9z 117 49 celite celite NNP cord-330847-a84pcc9z 117 50 ) ) -RRB- cord-330847-a84pcc9z 117 51 . . . cord-330847-a84pcc9z 118 1 The the DT cord-330847-a84pcc9z 118 2 number number NN cord-330847-a84pcc9z 118 3 of of IN cord-330847-a84pcc9z 118 4 infected infected JJ cord-330847-a84pcc9z 118 5 plants plant NNS cord-330847-a84pcc9z 118 6 was be VBD cord-330847-a84pcc9z 118 7 determined determine VBN cord-330847-a84pcc9z 118 8 by by IN cord-330847-a84pcc9z 118 9 visual visual JJ cord-330847-a84pcc9z 118 10 inspection inspection NN cord-330847-a84pcc9z 118 11 . . . cord-330847-a84pcc9z 119 1 No no DT cord-330847-a84pcc9z 119 2 symptoms symptom NNS cord-330847-a84pcc9z 119 3 were be VBD cord-330847-a84pcc9z 119 4 observed observe VBN cord-330847-a84pcc9z 119 5 on on IN cord-330847-a84pcc9z 119 6 control control NN cord-330847-a84pcc9z 119 7 plants plant NNS cord-330847-a84pcc9z 119 8 mock mock VBP cord-330847-a84pcc9z 119 9 inoculated inoculate VBN cord-330847-a84pcc9z 119 10 with with IN cord-330847-a84pcc9z 119 11 GKP GKP NNP cord-330847-a84pcc9z 119 12 buffer buffer NN cord-330847-a84pcc9z 119 13 alone alone RB cord-330847-a84pcc9z 119 14 Proc proc NN cord-330847-a84pcc9z 119 15 . . . cord-330847-a84pcc9z 120 1 Nat Nat NNP cord-330847-a84pcc9z 120 2 Other other JJ cord-330847-a84pcc9z 120 3 examples example NNS cord-330847-a84pcc9z 120 4 , , , cord-330847-a84pcc9z 120 5 such such JJ cord-330847-a84pcc9z 120 6 as as IN cord-330847-a84pcc9z 120 7 the the DT cord-330847-a84pcc9z 120 8 deletion deletion NN cord-330847-a84pcc9z 120 9 of of IN cord-330847-a84pcc9z 120 10 repeated repeat VBN cord-330847-a84pcc9z 120 11 sequences sequence NNS cord-330847-a84pcc9z 120 12 in in IN cord-330847-a84pcc9z 120 13 tobacco tobacco NN cord-330847-a84pcc9z 120 14 mosaic mosaic NN cord-330847-a84pcc9z 120 15 virus virus NN cord-330847-a84pcc9z 120 16 mutants mutant NNS cord-330847-a84pcc9z 120 17 , , , cord-330847-a84pcc9z 120 18 have have VBP cord-330847-a84pcc9z 120 19 been be VBN cord-330847-a84pcc9z 120 20 reported report VBN cord-330847-a84pcc9z 120 21 more more RBR cord-330847-a84pcc9z 120 22 recently recently RB cord-330847-a84pcc9z 120 23 ( ( -LRB- cord-330847-a84pcc9z 120 24 19 19 CD cord-330847-a84pcc9z 120 25 ) ) -RRB- cord-330847-a84pcc9z 120 26 Proc proc NN cord-330847-a84pcc9z 120 27 . . . cord-330847-a84pcc9z 121 1 Nat/. Nat/. NNP cord-330847-a84pcc9z 121 2 Acad Acad NNP cord-330847-a84pcc9z 121 3 . . . cord-330847-a84pcc9z 122 1 Sci Sci NNP cord-330847-a84pcc9z 122 2 . . . cord-330847-a84pcc9z 123 1 USA USA NNP cord-330847-a84pcc9z 123 2 Molecular Molecular NNP cord-330847-a84pcc9z 123 3 Cloning Cloning NNP cord-330847-a84pcc9z 123 4 : : : cord-330847-a84pcc9z 124 1 A a DT cord-330847-a84pcc9z 124 2 Laboratory Laboratory NNP cord-330847-a84pcc9z 124 3 Manual Manual NNP cord-330847-a84pcc9z 125 1 The the DT cord-330847-a84pcc9z 125 2 high high JJ cord-330847-a84pcc9z 125 3 degree degree NN cord-330847-a84pcc9z 125 4 of of IN cord-330847-a84pcc9z 125 5 nucleotide nucleotide JJ cord-330847-a84pcc9z 125 6 sequence sequence NN cord-330847-a84pcc9z 125 7 similarity similarity NN cord-330847-a84pcc9z 125 8 between between IN cord-330847-a84pcc9z 125 9 tomato tomato NN cord-330847-a84pcc9z 125 10 ringspot ringspot NN cord-330847-a84pcc9z 125 11 nepovirus nepovirus NNP cord-330847-a84pcc9z 125 12 RNAs RNAs NNP cord-330847-a84pcc9z 125 13 1 1 CD cord-330847-a84pcc9z 125 14 and and CC cord-330847-a84pcc9z 125 15 2 2 CD cord-330847-a84pcc9z 125 16 also also RB cord-330847-a84pcc9z 125 17 may may MD cord-330847-a84pcc9z 125 18 be be VB cord-330847-a84pcc9z 125 19 a a DT cord-330847-a84pcc9z 125 20 result result NN cord-330847-a84pcc9z 125 21 of of IN cord-330847-a84pcc9z 125 22 recombination recombination NN cord-330847-a84pcc9z 125 23 ( ( -LRB- cord-330847-a84pcc9z 125 24 26 26 CD cord-330847-a84pcc9z 125 25 ) ) -RRB- cord-330847-a84pcc9z 125 26 . . . cord-330847-a84pcc9z 126 1 Recently recently RB cord-330847-a84pcc9z 126 2 , , , cord-330847-a84pcc9z 126 3 recombination recombination NN cord-330847-a84pcc9z 126 4 was be VBD cord-330847-a84pcc9z 126 5 found find VBN cord-330847-a84pcc9z 126 6 to to TO cord-330847-a84pcc9z 126 7 have have VB cord-330847-a84pcc9z 126 8 occurred occur VBN cord-330847-a84pcc9z 126 9 between between IN cord-330847-a84pcc9z 126 10 turnip turnip NN cord-330847-a84pcc9z 126 11 crinkle crinkle NN cord-330847-a84pcc9z 126 12 virus virus NN cord-330847-a84pcc9z 126 13 genomic genomic NNP cord-330847-a84pcc9z 126 14 RNA RNA NNP cord-330847-a84pcc9z 126 15 and and CC cord-330847-a84pcc9z 126 16 satellite satellite NN cord-330847-a84pcc9z 126 17 RNA rna NN cord-330847-a84pcc9z 126 18 D D NNP cord-330847-a84pcc9z 126 19 Retroviruses Retroviruses NNP cord-330847-a84pcc9z 126 20 , , , cord-330847-a84pcc9z 126 21 Viroids Viroids NNP cord-330847-a84pcc9z 126 22 , , , cord-330847-a84pcc9z 126 23 and and CC cord-330847-a84pcc9z 126 24 RNA RNA NNP cord-330847-a84pcc9z 126 25 Recombination Recombination NNP cord-330847-a84pcc9z 126 26 New New NNP cord-330847-a84pcc9z 126 27 Aspects aspect NNS cord-330847-a84pcc9z 126 28 of of IN cord-330847-a84pcc9z 126 29 Positive Positive NNP cord-330847-a84pcc9z 126 30 Strand Strand NNP cord-330847-a84pcc9z 126 31 RNA RNA NNP cord-330847-a84pcc9z 126 32 Viruses virus NNS cord-330847-a84pcc9z 126 33 ACKNOWLEDGMENTS acknowledgments VBP cord-330847-a84pcc9z 126 34 25 25 CD cord-330847-a84pcc9z 127 1 This this DT cord-330847-a84pcc9z 127 2 work work NN cord-330847-a84pcc9z 127 3 was be VBD cord-330847-a84pcc9z 127 4 supported support VBN cord-330847-a84pcc9z 127 5 in in IN cord-330847-a84pcc9z 127 6 part part NN cord-330847-a84pcc9z 127 7 by by IN cord-330847-a84pcc9z 127 8 USDA USDA NNP cord-330847-a84pcc9z 127 9 Competitive Competitive NNP cord-330847-a84pcc9z 127 10 Grant Grant NNP cord-330847-a84pcc9z 127 11 26 26 CD