id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
work_pov3luuevzcuvon3rcd2obvd2e	Jennifer Lu	Bracken: estimating species abundance in metagenomics data	2017	17	.pdf	application/pdf	7424	626	61	by Kraken, a very fast read-level classifier, along with information about the genomes (2017), Bracken: estimating species abundance in metagenomics data. KrakEN), estimates species abundances in metagenomics samples by probabilistically To compute species abundance, any genome-level (strain-level) reads are simply added We then apply our abundance estimator, Bracken, which uses the numbers of reads assigned Figure 2 Estimates of species abundance in the i100 metagenomics dataset computed by Kraken (blue) and Bracken (blue + orange). Figure 3 Estimates of species abundance computed by Kraken (blue) and Bracken (blue + orange) for the i100 metagenomics data. Precise numbers for the Kraken classification, true read counts, and Bracken estimates are contained in Table S2B. Precise numbers for the Kraken classification, true read counts, and Bracken estimates are contained in Table S2B. and the number of reads assigned to each species by Bracken after abundance reestimation.	./cache/work_pov3luuevzcuvon3rcd2obvd2e.pdf	./txt/work_pov3luuevzcuvon3rcd2obvd2e.txt