id sid tid token lemma pos cord-309556-xv3413k1 1 1 key key JJ cord-309556-xv3413k1 2 1 : : : cord-309556-xv3413k1 2 2 cord-309556-xv3413k1 cord-309556-xv3413k1 VBN cord-309556-xv3413k1 2 3 authors author NNS cord-309556-xv3413k1 2 4 : : : cord-309556-xv3413k1 2 5 Chow Chow NNP cord-309556-xv3413k1 2 6 , , , cord-309556-xv3413k1 2 7 Ryan Ryan NNP cord-309556-xv3413k1 2 8 D. D. NNP cord-309556-xv3413k1 2 9 ; ; : cord-309556-xv3413k1 2 10 Chen Chen NNP cord-309556-xv3413k1 2 11 , , , cord-309556-xv3413k1 2 12 Sidi Sidi NNP cord-309556-xv3413k1 2 13 title title NN cord-309556-xv3413k1 2 14 : : : cord-309556-xv3413k1 2 15 The the DT cord-309556-xv3413k1 2 16 aging age VBG cord-309556-xv3413k1 2 17 transcriptome transcriptome NN cord-309556-xv3413k1 2 18 and and CC cord-309556-xv3413k1 2 19 cellular cellular JJ cord-309556-xv3413k1 2 20 landscape landscape NN cord-309556-xv3413k1 2 21 of of IN cord-309556-xv3413k1 2 22 the the DT cord-309556-xv3413k1 2 23 human human JJ cord-309556-xv3413k1 2 24 lung lung NN cord-309556-xv3413k1 2 25 in in IN cord-309556-xv3413k1 2 26 relation relation NN cord-309556-xv3413k1 2 27 to to IN cord-309556-xv3413k1 2 28 SARS SARS NNP cord-309556-xv3413k1 2 29 - - HYPH cord-309556-xv3413k1 2 30 CoV-2 CoV-2 NNP cord-309556-xv3413k1 2 31 date date NN cord-309556-xv3413k1 2 32 : : : cord-309556-xv3413k1 2 33 2020 2020 CD cord-309556-xv3413k1 2 34 - - HYPH cord-309556-xv3413k1 2 35 04 04 CD cord-309556-xv3413k1 2 36 - - SYM cord-309556-xv3413k1 2 37 15 15 CD cord-309556-xv3413k1 2 38 journal journal NN cord-309556-xv3413k1 2 39 : : : cord-309556-xv3413k1 3 1 bioRxiv biorxiv IN cord-309556-xv3413k1 3 2 DOI DOI NNP cord-309556-xv3413k1 3 3 : : : cord-309556-xv3413k1 4 1 10.1101/2020.04.07.030684 10.1101/2020.04.07.030684 NNP cord-309556-xv3413k1 5 1 sha sha NNP cord-309556-xv3413k1 5 2 : : : cord-309556-xv3413k1 5 3 56816e072e2af57957c7c6dcbbccd714463004bb 56816e072e2af57957c7c6dcbbccd714463004bb NNP cord-309556-xv3413k1 5 4 doc_id doc_id CD cord-309556-xv3413k1 5 5 : : : cord-309556-xv3413k1 5 6 309556 309556 CD cord-309556-xv3413k1 5 7 cord_uid cord_uid NNS cord-309556-xv3413k1 5 8 : : : cord-309556-xv3413k1 6 1 xv3413k1 xv3413k1 XX cord-309556-xv3413k1 7 1 Since since IN cord-309556-xv3413k1 7 2 the the DT cord-309556-xv3413k1 7 3 emergence emergence NN cord-309556-xv3413k1 7 4 of of IN cord-309556-xv3413k1 7 5 SARS SARS NNP cord-309556-xv3413k1 7 6 - - HYPH cord-309556-xv3413k1 7 7 CoV-2 CoV-2 NNP cord-309556-xv3413k1 7 8 in in IN cord-309556-xv3413k1 7 9 December December NNP cord-309556-xv3413k1 7 10 2019 2019 CD cord-309556-xv3413k1 7 11 , , , cord-309556-xv3413k1 7 12 Coronavirus Coronavirus NNP cord-309556-xv3413k1 7 13 Disease-2019 Disease-2019 NNP cord-309556-xv3413k1 7 14 ( ( -LRB- cord-309556-xv3413k1 7 15 COVID-19 COVID-19 NNP cord-309556-xv3413k1 7 16 ) ) -RRB- cord-309556-xv3413k1 7 17 has have VBZ cord-309556-xv3413k1 7 18 rapidly rapidly RB cord-309556-xv3413k1 7 19 spread spread VBN cord-309556-xv3413k1 7 20 across across IN cord-309556-xv3413k1 7 21 the the DT cord-309556-xv3413k1 7 22 globe globe NN cord-309556-xv3413k1 7 23 . . . cord-309556-xv3413k1 8 1 Epidemiologic epidemiologic JJ cord-309556-xv3413k1 8 2 studies study NNS cord-309556-xv3413k1 8 3 have have VBP cord-309556-xv3413k1 8 4 demonstrated demonstrate VBN cord-309556-xv3413k1 8 5 that that IN cord-309556-xv3413k1 8 6 age age NN cord-309556-xv3413k1 8 7 is be VBZ cord-309556-xv3413k1 8 8 one one CD cord-309556-xv3413k1 8 9 of of IN cord-309556-xv3413k1 8 10 the the DT cord-309556-xv3413k1 8 11 strongest strong JJS cord-309556-xv3413k1 8 12 risk risk NN cord-309556-xv3413k1 8 13 factors factor NNS cord-309556-xv3413k1 8 14 influencing influence VBG cord-309556-xv3413k1 8 15 the the DT cord-309556-xv3413k1 8 16 morbidity morbidity NN cord-309556-xv3413k1 8 17 and and CC cord-309556-xv3413k1 8 18 mortality mortality NN cord-309556-xv3413k1 8 19 of of IN cord-309556-xv3413k1 8 20 COVID-19 COVID-19 NNP cord-309556-xv3413k1 8 21 . . . cord-309556-xv3413k1 9 1 Here here RB cord-309556-xv3413k1 9 2 , , , cord-309556-xv3413k1 9 3 we -PRON- PRP cord-309556-xv3413k1 9 4 interrogate interrogate VBP cord-309556-xv3413k1 9 5 the the DT cord-309556-xv3413k1 9 6 transcriptional transcriptional JJ cord-309556-xv3413k1 9 7 features feature NNS cord-309556-xv3413k1 9 8 and and CC cord-309556-xv3413k1 9 9 cellular cellular JJ cord-309556-xv3413k1 9 10 landscapes landscape NNS cord-309556-xv3413k1 9 11 of of IN cord-309556-xv3413k1 9 12 the the DT cord-309556-xv3413k1 9 13 aging age VBG cord-309556-xv3413k1 9 14 human human JJ cord-309556-xv3413k1 9 15 lung lung NN cord-309556-xv3413k1 9 16 through through IN cord-309556-xv3413k1 9 17 integrative integrative JJ cord-309556-xv3413k1 9 18 analysis analysis NN cord-309556-xv3413k1 9 19 of of IN cord-309556-xv3413k1 9 20 bulk bulk JJ cord-309556-xv3413k1 9 21 and and CC cord-309556-xv3413k1 9 22 single single JJ cord-309556-xv3413k1 9 23 - - HYPH cord-309556-xv3413k1 9 24 cell cell NN cord-309556-xv3413k1 9 25 transcriptomics transcriptomic NNS cord-309556-xv3413k1 9 26 . . . cord-309556-xv3413k1 10 1 By by IN cord-309556-xv3413k1 10 2 intersecting intersect VBG cord-309556-xv3413k1 10 3 these these DT cord-309556-xv3413k1 10 4 age age NN cord-309556-xv3413k1 10 5 - - HYPH cord-309556-xv3413k1 10 6 associated associate VBN cord-309556-xv3413k1 10 7 changes change NNS cord-309556-xv3413k1 10 8 with with IN cord-309556-xv3413k1 10 9 experimental experimental JJ cord-309556-xv3413k1 10 10 data datum NNS cord-309556-xv3413k1 10 11 on on IN cord-309556-xv3413k1 10 12 host host NN cord-309556-xv3413k1 10 13 interactions interaction NNS cord-309556-xv3413k1 10 14 between between IN cord-309556-xv3413k1 10 15 SARS SARS NNP cord-309556-xv3413k1 10 16 - - HYPH cord-309556-xv3413k1 10 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 10 18 or or CC cord-309556-xv3413k1 10 19 its -PRON- PRP$ cord-309556-xv3413k1 10 20 relative relative JJ cord-309556-xv3413k1 10 21 SARS SARS NNP cord-309556-xv3413k1 10 22 - - HYPH cord-309556-xv3413k1 10 23 CoV CoV NNP cord-309556-xv3413k1 10 24 , , , cord-309556-xv3413k1 10 25 we -PRON- PRP cord-309556-xv3413k1 10 26 identify identify VBP cord-309556-xv3413k1 10 27 several several JJ cord-309556-xv3413k1 10 28 age age NN cord-309556-xv3413k1 10 29 - - HYPH cord-309556-xv3413k1 10 30 associated associate VBN cord-309556-xv3413k1 10 31 factors factor NNS cord-309556-xv3413k1 10 32 that that WDT cord-309556-xv3413k1 10 33 may may MD cord-309556-xv3413k1 10 34 contribute contribute VB cord-309556-xv3413k1 10 35 to to IN cord-309556-xv3413k1 10 36 the the DT cord-309556-xv3413k1 10 37 heightened heightened JJ cord-309556-xv3413k1 10 38 severity severity NN cord-309556-xv3413k1 10 39 of of IN cord-309556-xv3413k1 10 40 COVID-19 covid-19 CD cord-309556-xv3413k1 10 41 in in IN cord-309556-xv3413k1 10 42 older old JJR cord-309556-xv3413k1 10 43 populations population NNS cord-309556-xv3413k1 10 44 . . . cord-309556-xv3413k1 11 1 We -PRON- PRP cord-309556-xv3413k1 11 2 observed observe VBD cord-309556-xv3413k1 11 3 that that IN cord-309556-xv3413k1 11 4 age age NN cord-309556-xv3413k1 11 5 - - HYPH cord-309556-xv3413k1 11 6 associated associate VBN cord-309556-xv3413k1 11 7 gene gene NN cord-309556-xv3413k1 11 8 expression expression NN cord-309556-xv3413k1 11 9 and and CC cord-309556-xv3413k1 11 10 cell cell NN cord-309556-xv3413k1 11 11 populations population NNS cord-309556-xv3413k1 11 12 are be VBP cord-309556-xv3413k1 11 13 significantly significantly RB cord-309556-xv3413k1 11 14 linked link VBN cord-309556-xv3413k1 11 15 to to IN cord-309556-xv3413k1 11 16 the the DT cord-309556-xv3413k1 11 17 heightened heightened JJ cord-309556-xv3413k1 11 18 severity severity NN cord-309556-xv3413k1 11 19 of of IN cord-309556-xv3413k1 11 20 COVID-19 covid-19 CD cord-309556-xv3413k1 11 21 in in IN cord-309556-xv3413k1 11 22 older old JJR cord-309556-xv3413k1 11 23 populations population NNS cord-309556-xv3413k1 11 24 . . . cord-309556-xv3413k1 12 1 The the DT cord-309556-xv3413k1 12 2 aging age VBG cord-309556-xv3413k1 12 3 lung lung NN cord-309556-xv3413k1 12 4 is be VBZ cord-309556-xv3413k1 12 5 characterized characterize VBN cord-309556-xv3413k1 12 6 by by IN cord-309556-xv3413k1 12 7 increased increase VBN cord-309556-xv3413k1 12 8 vascular vascular JJ cord-309556-xv3413k1 12 9 smooth smooth JJ cord-309556-xv3413k1 12 10 muscle muscle NN cord-309556-xv3413k1 12 11 contraction contraction NN cord-309556-xv3413k1 12 12 , , , cord-309556-xv3413k1 12 13 reduced reduce VBN cord-309556-xv3413k1 12 14 mitochondrial mitochondrial JJ cord-309556-xv3413k1 12 15 activity activity NN cord-309556-xv3413k1 12 16 , , , cord-309556-xv3413k1 12 17 and and CC cord-309556-xv3413k1 12 18 decreased decrease VBD cord-309556-xv3413k1 12 19 lipid lipid NN cord-309556-xv3413k1 12 20 metabolism metabolism NN cord-309556-xv3413k1 12 21 . . . cord-309556-xv3413k1 13 1 Lung lung NN cord-309556-xv3413k1 13 2 epithelial epithelial JJ cord-309556-xv3413k1 13 3 cells cell NNS cord-309556-xv3413k1 13 4 , , , cord-309556-xv3413k1 13 5 macrophages macrophage NNS cord-309556-xv3413k1 13 6 , , , cord-309556-xv3413k1 13 7 and and CC cord-309556-xv3413k1 13 8 Th1 th1 NN cord-309556-xv3413k1 13 9 cells cell NNS cord-309556-xv3413k1 13 10 decrease decrease VBP cord-309556-xv3413k1 13 11 in in IN cord-309556-xv3413k1 13 12 abundance abundance NN cord-309556-xv3413k1 13 13 with with IN cord-309556-xv3413k1 13 14 age age NN cord-309556-xv3413k1 13 15 , , , cord-309556-xv3413k1 13 16 whereas whereas IN cord-309556-xv3413k1 13 17 fibroblasts fibroblast NNS cord-309556-xv3413k1 13 18 , , , cord-309556-xv3413k1 13 19 pericytes pericyte NNS cord-309556-xv3413k1 13 20 and and CC cord-309556-xv3413k1 13 21 CD4 CD4 NNP cord-309556-xv3413k1 13 22 + + CC cord-309556-xv3413k1 13 23 Tcm Tcm NNP cord-309556-xv3413k1 13 24 cells cell NNS cord-309556-xv3413k1 13 25 increase increase VBP cord-309556-xv3413k1 13 26 in in IN cord-309556-xv3413k1 13 27 abundance abundance NN cord-309556-xv3413k1 13 28 with with IN cord-309556-xv3413k1 13 29 age age NN cord-309556-xv3413k1 13 30 . . . cord-309556-xv3413k1 14 1 Several several JJ cord-309556-xv3413k1 14 2 age age NN cord-309556-xv3413k1 14 3 - - HYPH cord-309556-xv3413k1 14 4 associated associate VBN cord-309556-xv3413k1 14 5 genes gene NNS cord-309556-xv3413k1 14 6 have have VBP cord-309556-xv3413k1 14 7 functional functional JJ cord-309556-xv3413k1 14 8 effects effect NNS cord-309556-xv3413k1 14 9 on on IN cord-309556-xv3413k1 14 10 SARS SARS NNP cord-309556-xv3413k1 14 11 - - HYPH cord-309556-xv3413k1 14 12 CoV CoV NNP cord-309556-xv3413k1 14 13 replication replication NN cord-309556-xv3413k1 14 14 , , , cord-309556-xv3413k1 14 15 and and CC cord-309556-xv3413k1 14 16 directly directly RB cord-309556-xv3413k1 14 17 interact interact VB cord-309556-xv3413k1 14 18 with with IN cord-309556-xv3413k1 14 19 the the DT cord-309556-xv3413k1 14 20 SARS SARS NNP cord-309556-xv3413k1 14 21 - - HYPH cord-309556-xv3413k1 14 22 CoV-2 CoV-2 NNP cord-309556-xv3413k1 14 23 proteome proteome NN cord-309556-xv3413k1 14 24 . . . cord-309556-xv3413k1 15 1 Interestingly interestingly RB cord-309556-xv3413k1 15 2 , , , cord-309556-xv3413k1 15 3 age age NN cord-309556-xv3413k1 15 4 - - HYPH cord-309556-xv3413k1 15 5 associated associate VBN cord-309556-xv3413k1 15 6 genes gene NNS cord-309556-xv3413k1 15 7 are be VBP cord-309556-xv3413k1 15 8 heavily heavily RB cord-309556-xv3413k1 15 9 enriched enrich VBN cord-309556-xv3413k1 15 10 among among IN cord-309556-xv3413k1 15 11 those those DT cord-309556-xv3413k1 15 12 induced induce VBN cord-309556-xv3413k1 15 13 or or CC cord-309556-xv3413k1 15 14 suppressed suppress VBN cord-309556-xv3413k1 15 15 by by IN cord-309556-xv3413k1 15 16 SARS SARS NNP cord-309556-xv3413k1 15 17 - - HYPH cord-309556-xv3413k1 15 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 15 19 infection infection NN cord-309556-xv3413k1 15 20 . . . cord-309556-xv3413k1 16 1 These these DT cord-309556-xv3413k1 16 2 analyses analysis NNS cord-309556-xv3413k1 16 3 illuminate illuminate VBP cord-309556-xv3413k1 16 4 potential potential JJ cord-309556-xv3413k1 16 5 avenues avenue NNS cord-309556-xv3413k1 16 6 for for IN cord-309556-xv3413k1 16 7 further further JJ cord-309556-xv3413k1 16 8 studies study NNS cord-309556-xv3413k1 16 9 on on IN cord-309556-xv3413k1 16 10 the the DT cord-309556-xv3413k1 16 11 relationship relationship NN cord-309556-xv3413k1 16 12 between between IN cord-309556-xv3413k1 16 13 the the DT cord-309556-xv3413k1 16 14 aging age VBG cord-309556-xv3413k1 16 15 lung lung NN cord-309556-xv3413k1 16 16 and and CC cord-309556-xv3413k1 16 17 COVID-19 COVID-19 NNP cord-309556-xv3413k1 16 18 pathogenesis pathogenesis NN cord-309556-xv3413k1 16 19 , , , cord-309556-xv3413k1 16 20 which which WDT cord-309556-xv3413k1 16 21 may may MD cord-309556-xv3413k1 16 22 inform inform VB cord-309556-xv3413k1 16 23 strategies strategy NNS cord-309556-xv3413k1 16 24 to to IN cord-309556-xv3413k1 16 25 more more RBR cord-309556-xv3413k1 16 26 effectively effectively RB cord-309556-xv3413k1 16 27 treat treat VB cord-309556-xv3413k1 16 28 this this DT cord-309556-xv3413k1 16 29 disease disease NN cord-309556-xv3413k1 16 30 . . . cord-309556-xv3413k1 17 1 these these DT cord-309556-xv3413k1 17 2 data datum NNS cord-309556-xv3413k1 17 3 indicate indicate VBP cord-309556-xv3413k1 17 4 that that IN cord-309556-xv3413k1 17 5 differential differential JJ cord-309556-xv3413k1 17 6 expression expression NN cord-309556-xv3413k1 17 7 of of IN cord-309556-xv3413k1 17 8 SARS SARS NNP cord-309556-xv3413k1 17 9 - - HYPH cord-309556-xv3413k1 17 10 CoV-2 CoV-2 NNP cord-309556-xv3413k1 17 11 host host NN cord-309556-xv3413k1 17 12 entry entry NN cord-309556-xv3413k1 17 13 factors factor NNS cord-309556-xv3413k1 17 14 alone alone RB cord-309556-xv3413k1 17 15 is be VBZ cord-309556-xv3413k1 17 16 unlikely unlikely JJ cord-309556-xv3413k1 17 17 to to TO cord-309556-xv3413k1 17 18 explain explain VB cord-309556-xv3413k1 17 19 the the DT cord-309556-xv3413k1 17 20 relationship relationship NN cord-309556-xv3413k1 17 21 between between IN cord-309556-xv3413k1 17 22 age age NN cord-309556-xv3413k1 17 23 and and CC cord-309556-xv3413k1 17 24 severity severity NN cord-309556-xv3413k1 17 25 of of IN cord-309556-xv3413k1 17 26 COVID-19 covid-19 JJ cord-309556-xv3413k1 17 27 illness illness NN cord-309556-xv3413k1 17 28 . . . cord-309556-xv3413k1 18 1 To to TO cord-309556-xv3413k1 18 2 discern discern VB cord-309556-xv3413k1 18 3 the the DT cord-309556-xv3413k1 18 4 host host NN cord-309556-xv3413k1 18 5 cell cell NN cord-309556-xv3413k1 18 6 types type NNS cord-309556-xv3413k1 18 7 involved involve VBN cord-309556-xv3413k1 18 8 in in IN cord-309556-xv3413k1 18 9 COVID-19 COVID-19 NNP cord-309556-xv3413k1 18 10 entry entry NN cord-309556-xv3413k1 18 11 , , , cord-309556-xv3413k1 18 12 we -PRON- PRP cord-309556-xv3413k1 18 13 turned turn VBD cord-309556-xv3413k1 18 14 to to IN cord-309556-xv3413k1 18 15 a a DT cord-309556-xv3413k1 18 16 single single JJ cord-309556-xv3413k1 18 17 cell cell NN cord-309556-xv3413k1 18 18 RNA rna NN cord-309556-xv3413k1 18 19 - - HYPH cord-309556-xv3413k1 18 20 seq seq NNP cord-309556-xv3413k1 18 21 ( ( -LRB- cord-309556-xv3413k1 18 22 scRNA scRNA NNP cord-309556-xv3413k1 18 23 - - HYPH cord-309556-xv3413k1 18 24 seq seq NN cord-309556-xv3413k1 18 25 ) ) -RRB- cord-309556-xv3413k1 18 26 dataset dataset NN cord-309556-xv3413k1 18 27 of of IN cord-309556-xv3413k1 18 28 57,020 57,020 CD cord-309556-xv3413k1 18 29 human human JJ cord-309556-xv3413k1 18 30 lung lung NN cord-309556-xv3413k1 18 31 cells cell NNS cord-309556-xv3413k1 18 32 from from IN cord-309556-xv3413k1 18 33 the the DT cord-309556-xv3413k1 18 34 Tissue Tissue NNP cord-309556-xv3413k1 18 35 Stability Stability NNP cord-309556-xv3413k1 18 36 Cell Cell NNP cord-309556-xv3413k1 18 37 Atlas Atlas NNP cord-309556-xv3413k1 18 38 19 19 CD cord-309556-xv3413k1 18 39 . . . cord-309556-xv3413k1 19 1 In in IN cord-309556-xv3413k1 19 2 agreement agreement NN cord-309556-xv3413k1 19 3 with with IN cord-309556-xv3413k1 19 4 prior prior JJ cord-309556-xv3413k1 19 5 reports report NNS cord-309556-xv3413k1 19 6 , , , cord-309556-xv3413k1 19 7 analysis analysis NN cord-309556-xv3413k1 19 8 of of IN cord-309556-xv3413k1 19 9 the the DT cord-309556-xv3413k1 19 10 single single JJ cord-309556-xv3413k1 19 11 cell cell NN cord-309556-xv3413k1 19 12 lung lung NN cord-309556-xv3413k1 19 13 transcriptomes transcriptomes NNP cord-309556-xv3413k1 19 14 revealed reveal VBD cord-309556-xv3413k1 19 15 that that IN cord-309556-xv3413k1 19 16 alveolar alveolar NN cord-309556-xv3413k1 19 17 type type NN cord-309556-xv3413k1 19 18 2 2 CD cord-309556-xv3413k1 19 19 ( ( -LRB- cord-309556-xv3413k1 19 20 AT2 at2 NN cord-309556-xv3413k1 19 21 ) ) -RRB- cord-309556-xv3413k1 19 22 cells cell NNS cord-309556-xv3413k1 19 23 were be VBD cord-309556-xv3413k1 19 24 comparatively comparatively RB cord-309556-xv3413k1 19 25 enriched enrich VBN cord-309556-xv3413k1 19 26 in in IN cord-309556-xv3413k1 19 27 ACE2 ACE2 NNP cord-309556-xv3413k1 19 28 and and CC cord-309556-xv3413k1 19 29 TMPRSS2-expressing tmprss2-expresse VBG cord-309556-xv3413k1 19 30 cells cell NNS cord-309556-xv3413k1 19 31 20 20 CD cord-309556-xv3413k1 19 32 , , , cord-309556-xv3413k1 19 33 21 21 CD cord-309556-xv3413k1 19 34 ( ( -LRB- cord-309556-xv3413k1 19 35 Supplementary Supplementary NNP cord-309556-xv3413k1 19 36 Figure Figure NNP cord-309556-xv3413k1 19 37 3a 3a NN cord-309556-xv3413k1 19 38 - - HYPH cord-309556-xv3413k1 19 39 b b NN cord-309556-xv3413k1 19 40 ) ) -RRB- cord-309556-xv3413k1 19 41 . . . cord-309556-xv3413k1 20 1 However however RB cord-309556-xv3413k1 20 2 , , , cord-309556-xv3413k1 20 3 ACE2-expressing ace2-expressing NN cord-309556-xv3413k1 20 4 cells cell NNS cord-309556-xv3413k1 20 5 represented represent VBN cord-309556-xv3413k1 20 6 only only RB cord-309556-xv3413k1 20 7 1.69 1.69 CD cord-309556-xv3413k1 20 8 % % NN cord-309556-xv3413k1 20 9 of of IN cord-309556-xv3413k1 20 10 all all DT cord-309556-xv3413k1 20 11 AT2 at2 NN cord-309556-xv3413k1 20 12 cells cell NNS cord-309556-xv3413k1 20 13 , , , cord-309556-xv3413k1 20 14 while while IN cord-309556-xv3413k1 20 15 47.52 47.52 CD cord-309556-xv3413k1 20 16 % % NN cord-309556-xv3413k1 20 17 of of IN cord-309556-xv3413k1 20 18 AT2 at2 NN cord-309556-xv3413k1 20 19 cells cell NNS cord-309556-xv3413k1 20 20 expressed express VBD cord-309556-xv3413k1 20 21 TMPRSS2 TMPRSS2 NNP cord-309556-xv3413k1 20 22 . . . cord-309556-xv3413k1 21 1 Alveolar alveolar NN cord-309556-xv3413k1 21 2 type type NN cord-309556-xv3413k1 21 3 1 1 CD cord-309556-xv3413k1 21 4 ( ( -LRB- cord-309556-xv3413k1 21 5 AT1 at1 NN cord-309556-xv3413k1 21 6 ) ) -RRB- cord-309556-xv3413k1 21 7 cells cell NNS cord-309556-xv3413k1 21 8 also also RB cord-309556-xv3413k1 21 9 showed show VBD cord-309556-xv3413k1 21 10 detectable detectable JJ cord-309556-xv3413k1 21 11 expression expression NN cord-309556-xv3413k1 21 12 of of IN cord-309556-xv3413k1 21 13 ACE2 ACE2 NNP cord-309556-xv3413k1 21 14 and and CC cord-309556-xv3413k1 21 15 TMPRSS2 TMPRSS2 NNP cord-309556-xv3413k1 21 16 , , , cord-309556-xv3413k1 21 17 but but CC cord-309556-xv3413k1 21 18 at at IN cord-309556-xv3413k1 21 19 lower low JJR cord-309556-xv3413k1 21 20 frequencies frequency NNS cord-309556-xv3413k1 21 21 ( ( -LRB- cord-309556-xv3413k1 21 22 0.39 0.39 CD cord-309556-xv3413k1 21 23 % % NN cord-309556-xv3413k1 21 24 and and CC cord-309556-xv3413k1 21 25 26.70 26.70 CD cord-309556-xv3413k1 21 26 % % NN cord-309556-xv3413k1 21 27 ) ) -RRB- cord-309556-xv3413k1 21 28 . . . cord-309556-xv3413k1 22 1 CTSL CTSL NNP cord-309556-xv3413k1 22 2 expression expression NN cord-309556-xv3413k1 22 3 could could MD cord-309556-xv3413k1 22 4 be be VB cord-309556-xv3413k1 22 5 broadly broadly RB cord-309556-xv3413k1 22 6 detected detect VBN cord-309556-xv3413k1 22 7 in in IN cord-309556-xv3413k1 22 8 many many JJ cord-309556-xv3413k1 22 9 different different JJ cord-309556-xv3413k1 22 10 cell cell NN cord-309556-xv3413k1 22 11 types type NNS cord-309556-xv3413k1 22 12 including include VBG cord-309556-xv3413k1 22 13 AT2 at2 NN cord-309556-xv3413k1 22 14 cells cell NNS cord-309556-xv3413k1 22 15 , , , cord-309556-xv3413k1 22 16 but but CC cord-309556-xv3413k1 22 17 its -PRON- PRP$ cord-309556-xv3413k1 22 18 expression expression NN cord-309556-xv3413k1 22 19 was be VBD cord-309556-xv3413k1 22 20 particularly particularly RB cord-309556-xv3413k1 22 21 pronounced pronounce VBN cord-309556-xv3413k1 22 22 in in IN cord-309556-xv3413k1 22 23 macrophages macrophage NNS cord-309556-xv3413k1 22 24 ( ( -LRB- cord-309556-xv3413k1 22 25 Supplementary Supplementary NNP cord-309556-xv3413k1 22 26 Figure Figure NNP cord-309556-xv3413k1 22 27 3c 3c CD cord-309556-xv3413k1 22 28 ) ) -RRB- cord-309556-xv3413k1 22 29 . . . cord-309556-xv3413k1 23 1 Since since IN cord-309556-xv3413k1 23 2 the the DT cord-309556-xv3413k1 23 3 expression expression NN cord-309556-xv3413k1 23 4 of of IN cord-309556-xv3413k1 23 5 host host NN cord-309556-xv3413k1 23 6 entry entry NN cord-309556-xv3413k1 23 7 factors factor NNS cord-309556-xv3413k1 23 8 ACE2 ACE2 NNP cord-309556-xv3413k1 23 9 , , , cord-309556-xv3413k1 23 10 TMPRSS2 TMPRSS2 NNP cord-309556-xv3413k1 23 11 and and CC cord-309556-xv3413k1 23 12 CTSL CTSL NNP cord-309556-xv3413k1 23 13 did do VBD cord-309556-xv3413k1 23 14 not not RB cord-309556-xv3413k1 23 15 increase increase VB cord-309556-xv3413k1 23 16 with with IN cord-309556-xv3413k1 23 17 age age NN cord-309556-xv3413k1 23 18 , , , cord-309556-xv3413k1 23 19 we -PRON- PRP cord-309556-xv3413k1 23 20 next next RB cord-309556-xv3413k1 23 21 sought seek VBD cord-309556-xv3413k1 23 22 to to TO cord-309556-xv3413k1 23 23 identify identify VB cord-309556-xv3413k1 23 24 all all DT cord-309556-xv3413k1 23 25 age age NN cord-309556-xv3413k1 23 26 - - HYPH cord-309556-xv3413k1 23 27 associated associate VBN cord-309556-xv3413k1 23 28 genes gene NNS cord-309556-xv3413k1 23 29 expressed express VBN cord-309556-xv3413k1 23 30 in in IN cord-309556-xv3413k1 23 31 the the DT cord-309556-xv3413k1 23 32 human human JJ cord-309556-xv3413k1 23 33 lung lung NN cord-309556-xv3413k1 23 34 ( ( -LRB- cord-309556-xv3413k1 23 35 Methods method NNS cord-309556-xv3413k1 23 36 ) ) -RRB- cord-309556-xv3413k1 23 37 . . . cord-309556-xv3413k1 24 1 Using use VBG cord-309556-xv3413k1 24 2 a a DT cord-309556-xv3413k1 24 3 likelihood likelihood NN cord-309556-xv3413k1 24 4 - - HYPH cord-309556-xv3413k1 24 5 ratio ratio NN cord-309556-xv3413k1 24 6 test test NN cord-309556-xv3413k1 24 7 22 22 CD cord-309556-xv3413k1 24 8 , , , cord-309556-xv3413k1 24 9 we -PRON- PRP cord-309556-xv3413k1 24 10 pinpointed pinpoint VBD cord-309556-xv3413k1 24 11 the the DT cord-309556-xv3413k1 24 12 genes gene NNS cord-309556-xv3413k1 24 13 for for IN cord-309556-xv3413k1 24 14 which which WDT cord-309556-xv3413k1 24 15 age age NN cord-309556-xv3413k1 24 16 significantly significantly RB cord-309556-xv3413k1 24 17 impacts impact VBZ cord-309556-xv3413k1 24 18 their -PRON- PRP$ cord-309556-xv3413k1 24 19 expression expression NN cord-309556-xv3413k1 24 20 . . . cord-309556-xv3413k1 25 1 With with IN cord-309556-xv3413k1 25 2 a a DT cord-309556-xv3413k1 25 3 stringent stringent JJ cord-309556-xv3413k1 25 4 cutoff cutoff NN cord-309556-xv3413k1 25 5 of of IN cord-309556-xv3413k1 25 6 adjusted adjust VBN cord-309556-xv3413k1 25 7 p p NN cord-309556-xv3413k1 25 8 < < XX cord-309556-xv3413k1 25 9 0.0001 0.0001 CD cord-309556-xv3413k1 25 10 , , , cord-309556-xv3413k1 25 11 we -PRON- PRP cord-309556-xv3413k1 25 12 identified identify VBD cord-309556-xv3413k1 25 13 two two CD cord-309556-xv3413k1 25 14 clusters cluster NNS cord-309556-xv3413k1 25 15 of of IN cord-309556-xv3413k1 25 16 genes gene NNS cord-309556-xv3413k1 25 17 in in IN cord-309556-xv3413k1 25 18 which which WDT cord-309556-xv3413k1 25 19 their -PRON- PRP$ cord-309556-xv3413k1 25 20 expression expression NN cord-309556-xv3413k1 25 21 progressively progressively RB cord-309556-xv3413k1 25 22 changes change VBZ cord-309556-xv3413k1 25 23 with with IN cord-309556-xv3413k1 25 24 age age NN cord-309556-xv3413k1 25 25 ( ( -LRB- cord-309556-xv3413k1 25 26 Figure figure NN cord-309556-xv3413k1 25 27 1d 1d CD cord-309556-xv3413k1 25 28 ) ) -RRB- cord-309556-xv3413k1 25 29 . . . cord-309556-xv3413k1 26 1 Cluster cluster NN cord-309556-xv3413k1 26 2 1 1 CD cord-309556-xv3413k1 26 3 is be VBZ cord-309556-xv3413k1 26 4 composed compose VBN cord-309556-xv3413k1 26 5 of of IN cord-309556-xv3413k1 26 6 643 643 CD cord-309556-xv3413k1 26 7 genes gene NNS cord-309556-xv3413k1 26 8 that that WDT cord-309556-xv3413k1 26 9 increase increase VBP cord-309556-xv3413k1 26 10 in in IN cord-309556-xv3413k1 26 11 expression expression NN cord-309556-xv3413k1 26 12 with with IN cord-309556-xv3413k1 26 13 age age NN cord-309556-xv3413k1 26 14 , , , cord-309556-xv3413k1 26 15 while while IN cord-309556-xv3413k1 26 16 Cluster cluster NN cord-309556-xv3413k1 26 17 2 2 CD cord-309556-xv3413k1 26 18 contains contain VBZ cord-309556-xv3413k1 26 19 642 642 CD cord-309556-xv3413k1 26 20 genes gene NNS cord-309556-xv3413k1 26 21 that that WDT cord-309556-xv3413k1 26 22 decrease decrease VBP cord-309556-xv3413k1 26 23 in in IN cord-309556-xv3413k1 26 24 expression expression NN cord-309556-xv3413k1 26 25 with with IN cord-309556-xv3413k1 26 26 age age NN cord-309556-xv3413k1 26 27 . . . cord-309556-xv3413k1 27 1 Gene gene NN cord-309556-xv3413k1 27 2 ontology ontology NN cord-309556-xv3413k1 27 3 and and CC cord-309556-xv3413k1 27 4 pathway pathway NN cord-309556-xv3413k1 27 5 analysis analysis NN cord-309556-xv3413k1 27 6 of of IN cord-309556-xv3413k1 27 7 Cluster cluster NN cord-309556-xv3413k1 27 8 1 1 CD cord-309556-xv3413k1 27 9 genes gene NNS cord-309556-xv3413k1 27 10 ( ( -LRB- cord-309556-xv3413k1 27 11 increasing increase VBG cord-309556-xv3413k1 27 12 with with IN cord-309556-xv3413k1 27 13 age age NN cord-309556-xv3413k1 27 14 ) ) -RRB- cord-309556-xv3413k1 27 15 revealed reveal VBD cord-309556-xv3413k1 27 16 significant significant JJ cord-309556-xv3413k1 27 17 enrichment enrichment NN cord-309556-xv3413k1 27 18 for for IN cord-309556-xv3413k1 27 19 cell cell NN cord-309556-xv3413k1 27 20 adhesion adhesion NN cord-309556-xv3413k1 27 21 , , , cord-309556-xv3413k1 27 22 vascular vascular JJ cord-309556-xv3413k1 27 23 smooth smooth JJ cord-309556-xv3413k1 27 24 muscle muscle NN cord-309556-xv3413k1 27 25 contraction contraction NN cord-309556-xv3413k1 27 26 , , , cord-309556-xv3413k1 27 27 oxytocin oxytocin NN cord-309556-xv3413k1 27 28 signaling signal VBG cord-309556-xv3413k1 27 29 , , , cord-309556-xv3413k1 27 30 and and CC cord-309556-xv3413k1 27 31 platelet platelet NN cord-309556-xv3413k1 27 32 activation activation NN cord-309556-xv3413k1 27 33 , , , cord-309556-xv3413k1 27 34 in in IN cord-309556-xv3413k1 27 35 addition addition NN cord-309556-xv3413k1 27 36 to to IN cord-309556-xv3413k1 27 37 several several JJ cord-309556-xv3413k1 27 38 other other JJ cord-309556-xv3413k1 27 39 pathways pathway NNS cord-309556-xv3413k1 27 40 ( ( -LRB- cord-309556-xv3413k1 27 41 Figure figure NN cord-309556-xv3413k1 27 42 1e 1e CD cord-309556-xv3413k1 27 43 ) ) -RRB- cord-309556-xv3413k1 27 44 . . . cord-309556-xv3413k1 28 1 These these DT cord-309556-xv3413k1 28 2 findings finding NNS cord-309556-xv3413k1 28 3 are be VBP cord-309556-xv3413k1 28 4 consistent consistent JJ cord-309556-xv3413k1 28 5 with with IN cord-309556-xv3413k1 28 6 known know VBN cord-309556-xv3413k1 28 7 physiologic physiologic JJ cord-309556-xv3413k1 28 8 changes change NNS cord-309556-xv3413k1 28 9 of of IN cord-309556-xv3413k1 28 10 aging age VBG cord-309556-xv3413k1 28 11 , , , cord-309556-xv3413k1 28 12 including include VBG cord-309556-xv3413k1 28 13 decreased decrease VBN cord-309556-xv3413k1 28 14 pulmonary pulmonary JJ cord-309556-xv3413k1 28 15 compliance compliance NN cord-309556-xv3413k1 28 16 23 23 CD cord-309556-xv3413k1 28 17 , , , cord-309556-xv3413k1 28 18 and and CC cord-309556-xv3413k1 28 19 heightened heighten VBD cord-309556-xv3413k1 28 20 risk risk NN cord-309556-xv3413k1 28 21 for for IN cord-309556-xv3413k1 28 22 thrombotic thrombotic JJ cord-309556-xv3413k1 28 23 diseases disease NNS cord-309556-xv3413k1 28 24 24 24 CD cord-309556-xv3413k1 28 25 . . . cord-309556-xv3413k1 29 1 Of of IN cord-309556-xv3413k1 29 2 note note NN cord-309556-xv3413k1 29 3 , , , cord-309556-xv3413k1 29 4 deregulation deregulation NN cord-309556-xv3413k1 29 5 of of IN cord-309556-xv3413k1 29 6 the the DT cord-309556-xv3413k1 29 7 reninangiotensin reninangiotensin NNP cord-309556-xv3413k1 29 8 system system NN cord-309556-xv3413k1 29 9 has have VBZ cord-309556-xv3413k1 29 10 been be VBN cord-309556-xv3413k1 29 11 implicated implicate VBN cord-309556-xv3413k1 29 12 in in IN cord-309556-xv3413k1 29 13 the the DT cord-309556-xv3413k1 29 14 pathogenesis pathogenesis NN cord-309556-xv3413k1 29 15 of of IN cord-309556-xv3413k1 29 16 acute acute JJ cord-309556-xv3413k1 29 17 lung lung NN cord-309556-xv3413k1 29 18 injury injury NN cord-309556-xv3413k1 29 19 induced induce VBN cord-309556-xv3413k1 29 20 by by IN cord-309556-xv3413k1 29 21 SARS- SARS- NNP cord-309556-xv3413k1 29 22 China China NNP cord-309556-xv3413k1 29 23 and and CC cord-309556-xv3413k1 29 24 Italy Italy NNP cord-309556-xv3413k1 29 25 have have VBP cord-309556-xv3413k1 29 26 found find VBN cord-309556-xv3413k1 29 27 that that IN cord-309556-xv3413k1 29 28 patients patient NNS cord-309556-xv3413k1 29 29 with with IN cord-309556-xv3413k1 29 30 hypertension hypertension NN cord-309556-xv3413k1 29 31 were be VBD cord-309556-xv3413k1 29 32 more more RBR cord-309556-xv3413k1 29 33 likely likely JJ cord-309556-xv3413k1 29 34 to to TO cord-309556-xv3413k1 29 35 develop develop VB cord-309556-xv3413k1 29 36 ARDS ARDS NNP cord-309556-xv3413k1 29 37 17 17 CD cord-309556-xv3413k1 29 38 , , , cord-309556-xv3413k1 29 39 require require VB cord-309556-xv3413k1 29 40 ICU ICU NNP cord-309556-xv3413k1 29 41 admission admission NN cord-309556-xv3413k1 29 42 31 31 CD cord-309556-xv3413k1 29 43 , , , cord-309556-xv3413k1 29 44 and and CC cord-309556-xv3413k1 29 45 die die VB cord-309556-xv3413k1 29 46 from from IN cord-309556-xv3413k1 29 47 the the DT cord-309556-xv3413k1 29 48 disease disease NN cord-309556-xv3413k1 29 49 32 32 CD cord-309556-xv3413k1 29 50 , , , cord-309556-xv3413k1 29 51 though though IN cord-309556-xv3413k1 29 52 we -PRON- PRP cord-309556-xv3413k1 29 53 note note VBP cord-309556-xv3413k1 29 54 that that IN cord-309556-xv3413k1 29 55 correlative correlative JJ cord-309556-xv3413k1 29 56 epidemiologic epidemiologic JJ cord-309556-xv3413k1 29 57 studies study NNS cord-309556-xv3413k1 29 58 do do VBP cord-309556-xv3413k1 29 59 not not RB cord-309556-xv3413k1 29 60 necessarily necessarily RB cord-309556-xv3413k1 29 61 demonstrate demonstrate VB cord-309556-xv3413k1 29 62 causality causality NN cord-309556-xv3413k1 29 63 . . . cord-309556-xv3413k1 30 1 Cluster cluster NN cord-309556-xv3413k1 30 2 2 2 CD cord-309556-xv3413k1 30 3 genes gene NNS cord-309556-xv3413k1 30 4 ( ( -LRB- cord-309556-xv3413k1 30 5 decreasing decrease VBG cord-309556-xv3413k1 30 6 with with IN cord-309556-xv3413k1 30 7 age age NN cord-309556-xv3413k1 30 8 ) ) -RRB- cord-309556-xv3413k1 30 9 were be VBD cord-309556-xv3413k1 30 10 significantly significantly RB cord-309556-xv3413k1 30 11 enriched enrich VBN cord-309556-xv3413k1 30 12 for for IN cord-309556-xv3413k1 30 13 mitochondrion mitochondrion NN cord-309556-xv3413k1 30 14 , , , cord-309556-xv3413k1 30 15 mitochondrial mitochondrial JJ cord-309556-xv3413k1 30 16 translation translation NN cord-309556-xv3413k1 30 17 , , , cord-309556-xv3413k1 30 18 metabolic metabolic JJ cord-309556-xv3413k1 30 19 pathways pathway NNS cord-309556-xv3413k1 30 20 , , , cord-309556-xv3413k1 30 21 and and CC cord-309556-xv3413k1 30 22 mitosis mitosis NN cord-309556-xv3413k1 30 23 , , , cord-309556-xv3413k1 30 24 among among IN cord-309556-xv3413k1 30 25 other other JJ cord-309556-xv3413k1 30 26 pathways pathway NNS cord-309556-xv3413k1 30 27 ( ( -LRB- cord-309556-xv3413k1 30 28 Figure figure NN cord-309556-xv3413k1 30 29 1f 1f CD cord-309556-xv3413k1 30 30 ) ) -RRB- cord-309556-xv3413k1 30 31 , , , cord-309556-xv3413k1 30 32 which which WDT cord-309556-xv3413k1 30 33 is be VBZ cord-309556-xv3413k1 30 34 consistent consistent JJ cord-309556-xv3413k1 30 35 with with IN cord-309556-xv3413k1 30 36 prior prior JJ cord-309556-xv3413k1 30 37 observations observation NNS cord-309556-xv3413k1 30 38 of of IN cord-309556-xv3413k1 30 39 progressive progressive JJ cord-309556-xv3413k1 30 40 mitochondrial mitochondrial JJ cord-309556-xv3413k1 30 41 dysfunction dysfunction NN cord-309556-xv3413k1 30 42 with with IN cord-309556-xv3413k1 30 43 aging age VBG cord-309556-xv3413k1 30 44 [ [ -LRB- cord-309556-xv3413k1 30 45 33 33 CD cord-309556-xv3413k1 30 46 ] ] -RRB- cord-309556-xv3413k1 30 47 [ [ -LRB- cord-309556-xv3413k1 30 48 34 34 CD cord-309556-xv3413k1 30 49 ] ] -RRB- cord-309556-xv3413k1 30 50 [ [ -LRB- cord-309556-xv3413k1 30 51 35 35 CD cord-309556-xv3413k1 30 52 ] ] -RRB- cord-309556-xv3413k1 30 53 . . . cord-309556-xv3413k1 31 1 Of of IN cord-309556-xv3413k1 31 2 note note NN cord-309556-xv3413k1 31 3 , , , cord-309556-xv3413k1 31 4 Cluster cluster NN cord-309556-xv3413k1 31 5 2 2 CD cord-309556-xv3413k1 31 6 was be VBD cord-309556-xv3413k1 31 7 also also RB cord-309556-xv3413k1 31 8 enriched enrich VBN cord-309556-xv3413k1 31 9 for for IN cord-309556-xv3413k1 31 10 genes gene NNS cord-309556-xv3413k1 31 11 involved involve VBN cord-309556-xv3413k1 31 12 in in IN cord-309556-xv3413k1 31 13 lipid lipid NN cord-309556-xv3413k1 31 14 metabolism metabolism NN cord-309556-xv3413k1 31 15 , , , cord-309556-xv3413k1 31 16 fatty fatty JJ cord-309556-xv3413k1 31 17 acid acid NN cord-309556-xv3413k1 31 18 metabolism metabolism NN cord-309556-xv3413k1 31 19 , , , cord-309556-xv3413k1 31 20 peroxisome peroxisome NN cord-309556-xv3413k1 31 21 , , , cord-309556-xv3413k1 31 22 and and CC cord-309556-xv3413k1 31 23 lysosomal lysosomal JJ cord-309556-xv3413k1 31 24 membranes membrane NNS cord-309556-xv3413k1 31 25 . . . cord-309556-xv3413k1 32 1 Age age NN cord-309556-xv3413k1 32 2 - - HYPH cord-309556-xv3413k1 32 3 associated associate VBN cord-309556-xv3413k1 32 4 alterations alteration NNS cord-309556-xv3413k1 32 5 in in IN cord-309556-xv3413k1 32 6 lipid lipid NN cord-309556-xv3413k1 32 7 metabolism metabolism NN cord-309556-xv3413k1 32 8 could could MD cord-309556-xv3413k1 32 9 impact impact VB cord-309556-xv3413k1 32 10 SARS SARS NNP cord-309556-xv3413k1 32 11 - - HYPH cord-309556-xv3413k1 32 12 CoV-2 CoV-2 NNP cord-309556-xv3413k1 32 13 infection infection NN cord-309556-xv3413k1 32 14 , , , cord-309556-xv3413k1 32 15 as as IN cord-309556-xv3413k1 32 16 SARS SARS NNP cord-309556-xv3413k1 32 17 - - HYPH cord-309556-xv3413k1 32 18 CoV CoV NNP cord-309556-xv3413k1 32 19 can can MD cord-309556-xv3413k1 32 20 enter enter VB cord-309556-xv3413k1 32 21 cells cell NNS cord-309556-xv3413k1 32 22 through through IN cord-309556-xv3413k1 32 23 cholesterol cholesterol NN cord-309556-xv3413k1 32 24 - - HYPH cord-309556-xv3413k1 32 25 rich rich JJ cord-309556-xv3413k1 32 26 lipid lipid NN cord-309556-xv3413k1 32 27 rafts raft NNS cord-309556-xv3413k1 32 28 [ [ -LRB- cord-309556-xv3413k1 32 29 36 36 CD cord-309556-xv3413k1 32 30 ] ] -RRB- cord-309556-xv3413k1 33 1 [ [ -LRB- cord-309556-xv3413k1 33 2 37 37 CD cord-309556-xv3413k1 33 3 ] ] -RRB- cord-309556-xv3413k1 33 4 [ [ -LRB- cord-309556-xv3413k1 33 5 38 38 CD cord-309556-xv3413k1 33 6 ] ] -RRB- cord-309556-xv3413k1 33 7 [ [ -LRB- cord-309556-xv3413k1 33 8 39 39 CD cord-309556-xv3413k1 33 9 ] ] -RRB- cord-309556-xv3413k1 33 10 . . . cord-309556-xv3413k1 34 1 Similarly similarly RB cord-309556-xv3413k1 34 2 , , , cord-309556-xv3413k1 34 3 age age NN cord-309556-xv3413k1 34 4 - - HYPH cord-309556-xv3413k1 34 5 associated associate VBN cord-309556-xv3413k1 34 6 alterations alteration NNS cord-309556-xv3413k1 34 7 in in IN cord-309556-xv3413k1 34 8 lysosomes lysosome NNS cord-309556-xv3413k1 34 9 could could MD cord-309556-xv3413k1 34 10 influence influence VB cord-309556-xv3413k1 34 11 late late RB cord-309556-xv3413k1 34 12 endocytic endocytic JJ cord-309556-xv3413k1 34 13 viral viral JJ cord-309556-xv3413k1 34 14 entry entry NN cord-309556-xv3413k1 34 15 , , , cord-309556-xv3413k1 34 16 as as IN cord-309556-xv3413k1 34 17 the the DT cord-309556-xv3413k1 34 18 protease protease NN cord-309556-xv3413k1 34 19 cathepsin cathepsin NN cord-309556-xv3413k1 34 20 L l NN cord-309556-xv3413k1 34 21 cleaves cleave VBZ cord-309556-xv3413k1 34 22 SARS SARS NNP cord-309556-xv3413k1 34 23 - - HYPH cord-309556-xv3413k1 34 24 CoV CoV NNP cord-309556-xv3413k1 34 25 spike spike NN cord-309556-xv3413k1 34 26 proteins protein NNS cord-309556-xv3413k1 34 27 from from IN cord-309556-xv3413k1 34 28 within within IN cord-309556-xv3413k1 34 29 lysosomes lysosome NNS cord-309556-xv3413k1 34 30 40 40 CD cord-309556-xv3413k1 34 31 , , , cord-309556-xv3413k1 34 32 41 41 CD cord-309556-xv3413k1 34 33 . . . cord-309556-xv3413k1 35 1 Having have VBG cord-309556-xv3413k1 35 2 compiled compile VBN cord-309556-xv3413k1 35 3 a a DT cord-309556-xv3413k1 35 4 high high JJ cord-309556-xv3413k1 35 5 - - HYPH cord-309556-xv3413k1 35 6 confidence confidence NN cord-309556-xv3413k1 35 7 set set NN cord-309556-xv3413k1 35 8 of of IN cord-309556-xv3413k1 35 9 age age NN cord-309556-xv3413k1 35 10 - - HYPH cord-309556-xv3413k1 35 11 associated associate VBN cord-309556-xv3413k1 35 12 genes gene NNS cord-309556-xv3413k1 35 13 , , , cord-309556-xv3413k1 35 14 we -PRON- PRP cord-309556-xv3413k1 35 15 sought seek VBD cord-309556-xv3413k1 35 16 to to TO cord-309556-xv3413k1 35 17 identify identify VB cord-309556-xv3413k1 35 18 the the DT cord-309556-xv3413k1 35 19 lung lung NN cord-309556-xv3413k1 35 20 cell cell NN cord-309556-xv3413k1 35 21 types type NNS cord-309556-xv3413k1 35 22 that that WDT cord-309556-xv3413k1 35 23 normally normally RB cord-309556-xv3413k1 35 24 express express VBP cord-309556-xv3413k1 35 25 these these DT cord-309556-xv3413k1 35 26 genes gene NNS cord-309556-xv3413k1 35 27 , , , cord-309556-xv3413k1 35 28 using use VBG cord-309556-xv3413k1 35 29 the the DT cord-309556-xv3413k1 35 30 human human JJ cord-309556-xv3413k1 35 31 lung lung NN cord-309556-xv3413k1 35 32 single single JJ cord-309556-xv3413k1 35 33 cell cell NN cord-309556-xv3413k1 35 34 transcriptomics transcriptomic NNS cord-309556-xv3413k1 35 35 dataset dataset VBN cord-309556-xv3413k1 35 36 from from IN cord-309556-xv3413k1 35 37 the the DT cord-309556-xv3413k1 35 38 Tissue Tissue NNP cord-309556-xv3413k1 35 39 Stability Stability NNP cord-309556-xv3413k1 35 40 Cell Cell NNP cord-309556-xv3413k1 35 41 Atlas Atlas NNP cord-309556-xv3413k1 35 42 19 19 CD cord-309556-xv3413k1 35 43 . . . cord-309556-xv3413k1 36 1 By by IN cord-309556-xv3413k1 36 2 examining examine VBG cord-309556-xv3413k1 36 3 the the DT cord-309556-xv3413k1 36 4 scaled scale VBN cord-309556-xv3413k1 36 5 percentage percentage NN cord-309556-xv3413k1 36 6 of of IN cord-309556-xv3413k1 36 7 expressing express VBG cord-309556-xv3413k1 36 8 cells cell NNS cord-309556-xv3413k1 36 9 within within IN cord-309556-xv3413k1 36 10 each each DT cord-309556-xv3413k1 36 11 cell cell NN cord-309556-xv3413k1 36 12 subset subset VBN cord-309556-xv3413k1 36 13 , , , cord-309556-xv3413k1 36 14 we -PRON- PRP cord-309556-xv3413k1 36 15 identified identify VBD cord-309556-xv3413k1 36 16 age age NN cord-309556-xv3413k1 36 17 - - HYPH cord-309556-xv3413k1 36 18 associated associate VBN cord-309556-xv3413k1 36 19 genes gene NNS cord-309556-xv3413k1 36 20 predominantly predominantly RB cord-309556-xv3413k1 36 21 enriched enrich VBN cord-309556-xv3413k1 36 22 in in IN cord-309556-xv3413k1 36 23 different different JJ cord-309556-xv3413k1 36 24 cell cell NN cord-309556-xv3413k1 36 25 types type NNS cord-309556-xv3413k1 36 26 . . . cord-309556-xv3413k1 37 1 Cell cell NN cord-309556-xv3413k1 37 2 types type NNS cord-309556-xv3413k1 37 3 with with IN cord-309556-xv3413k1 37 4 highly highly RB cord-309556-xv3413k1 37 5 enriched enrich VBN cord-309556-xv3413k1 37 6 expression expression NN cord-309556-xv3413k1 37 7 for for IN cord-309556-xv3413k1 37 8 certain certain JJ cord-309556-xv3413k1 37 9 Cluster cluster NN cord-309556-xv3413k1 37 10 1 1 CD cord-309556-xv3413k1 37 11 genes gene NNS cord-309556-xv3413k1 37 12 ( ( -LRB- cord-309556-xv3413k1 37 13 increasing increase VBG cord-309556-xv3413k1 37 14 with with IN cord-309556-xv3413k1 37 15 age age NN cord-309556-xv3413k1 37 16 ) ) -RRB- cord-309556-xv3413k1 37 17 included include VBD cord-309556-xv3413k1 37 18 fibroblasts fibroblast NNS cord-309556-xv3413k1 37 19 , , , cord-309556-xv3413k1 37 20 muscle muscle NN cord-309556-xv3413k1 37 21 cells cell NNS cord-309556-xv3413k1 37 22 , , , cord-309556-xv3413k1 37 23 and and CC cord-309556-xv3413k1 37 24 lymph lymph NN cord-309556-xv3413k1 37 25 vessels vessel NNS cord-309556-xv3413k1 37 26 ( ( -LRB- cord-309556-xv3413k1 37 27 Figure figure NN cord-309556-xv3413k1 37 28 2a 2a CD cord-309556-xv3413k1 37 29 ) ) -RRB- cord-309556-xv3413k1 37 30 . . . cord-309556-xv3413k1 38 1 In in IN cord-309556-xv3413k1 38 2 contrast contrast NN cord-309556-xv3413k1 38 3 , , , cord-309556-xv3413k1 38 4 cell cell NN cord-309556-xv3413k1 38 5 types type NNS cord-309556-xv3413k1 38 6 with with IN cord-309556-xv3413k1 38 7 highly highly RB cord-309556-xv3413k1 38 8 enriched enrich VBN cord-309556-xv3413k1 38 9 expression expression NN cord-309556-xv3413k1 38 10 for for IN cord-309556-xv3413k1 38 11 certain certain JJ cord-309556-xv3413k1 38 12 Cluster cluster NN cord-309556-xv3413k1 38 13 2 2 CD cord-309556-xv3413k1 38 14 genes gene NNS cord-309556-xv3413k1 38 15 ( ( -LRB- cord-309556-xv3413k1 38 16 decreasing decrease VBG cord-309556-xv3413k1 38 17 with with IN cord-309556-xv3413k1 38 18 age age NN cord-309556-xv3413k1 38 19 ) ) -RRB- cord-309556-xv3413k1 38 20 included include VBD cord-309556-xv3413k1 38 21 macrophages macrophage NNS cord-309556-xv3413k1 38 22 , , , cord-309556-xv3413k1 38 23 dividing divide VBG cord-309556-xv3413k1 38 24 dendritic dendritic JJ cord-309556-xv3413k1 38 25 cells cell NNS cord-309556-xv3413k1 38 26 ( ( -LRB- cord-309556-xv3413k1 38 27 DCs)/monocytes DCs)/monocytes NNPS cord-309556-xv3413k1 38 28 , , , cord-309556-xv3413k1 38 29 and and CC cord-309556-xv3413k1 38 30 AT2 at2 NN cord-309556-xv3413k1 38 31 cells cell NNS cord-309556-xv3413k1 38 32 ( ( -LRB- cord-309556-xv3413k1 38 33 Figure figure NN cord-309556-xv3413k1 38 34 2b 2b CD cord-309556-xv3413k1 38 35 ) ) -RRB- cord-309556-xv3413k1 38 36 . . . cord-309556-xv3413k1 39 1 Similar similar JJ cord-309556-xv3413k1 39 2 results result NNS cord-309556-xv3413k1 39 3 were be VBD cord-309556-xv3413k1 39 4 found find VBN cord-309556-xv3413k1 39 5 using use VBG cord-309556-xv3413k1 39 6 an an DT cord-309556-xv3413k1 39 7 independent independent JJ cord-309556-xv3413k1 39 8 human human JJ cord-309556-xv3413k1 39 9 lung lung NN cord-309556-xv3413k1 39 10 scRNA scRNA NNP cord-309556-xv3413k1 39 11 - - HYPH cord-309556-xv3413k1 39 12 seq seq NN cord-309556-xv3413k1 39 13 dataset dataset NN cord-309556-xv3413k1 39 14 from from IN cord-309556-xv3413k1 39 15 the the DT cord-309556-xv3413k1 39 16 Human Human NNP cord-309556-xv3413k1 39 17 Lung Lung NNP cord-309556-xv3413k1 39 18 Cell Cell NNP cord-309556-xv3413k1 39 19 Atlas Atlas NNP cord-309556-xv3413k1 39 20 ( ( -LRB- cord-309556-xv3413k1 39 21 Supplementary Supplementary NNP cord-309556-xv3413k1 39 22 Figure Figure NNP cord-309556-xv3413k1 39 23 4a 4a NN cord-309556-xv3413k1 39 24 - - HYPH cord-309556-xv3413k1 39 25 b b NN cord-309556-xv3413k1 39 26 ) ) -RRB- cord-309556-xv3413k1 39 27 42 42 CD cord-309556-xv3413k1 39 28 . . . cord-309556-xv3413k1 40 1 Examining examine VBG cord-309556-xv3413k1 40 2 the the DT cord-309556-xv3413k1 40 3 muscle muscle NN cord-309556-xv3413k1 40 4 - - HYPH cord-309556-xv3413k1 40 5 enriched enrich VBN cord-309556-xv3413k1 40 6 genes gene NNS cord-309556-xv3413k1 40 7 that that WDT cord-309556-xv3413k1 40 8 increased increase VBD cord-309556-xv3413k1 40 9 in in IN cord-309556-xv3413k1 40 10 expression expression NN cord-309556-xv3413k1 40 11 with with IN cord-309556-xv3413k1 40 12 age age NN cord-309556-xv3413k1 40 13 , , , cord-309556-xv3413k1 40 14 gene gene NN cord-309556-xv3413k1 40 15 ontology ontology NN cord-309556-xv3413k1 40 16 analysis analysis NN cord-309556-xv3413k1 40 17 revealed reveal VBD cord-309556-xv3413k1 40 18 enrichment enrichment NN cord-309556-xv3413k1 40 19 for for IN cord-309556-xv3413k1 40 20 vascular vascular JJ cord-309556-xv3413k1 40 21 smooth smooth JJ cord-309556-xv3413k1 40 22 muscle muscle NN cord-309556-xv3413k1 40 23 contraction contraction NN cord-309556-xv3413k1 40 24 , , , cord-309556-xv3413k1 40 25 cGMP cGMP NNP cord-309556-xv3413k1 40 26 - - HYPH cord-309556-xv3413k1 40 27 PKG pkg NN cord-309556-xv3413k1 40 28 signaling signaling NN cord-309556-xv3413k1 40 29 , , , cord-309556-xv3413k1 40 30 Z z NN cord-309556-xv3413k1 40 31 - - HYPH cord-309556-xv3413k1 40 32 disc disc NN cord-309556-xv3413k1 40 33 , , , cord-309556-xv3413k1 40 34 and and CC cord-309556-xv3413k1 40 35 actin actin NN cord-309556-xv3413k1 40 36 cytoskeleton cytoskeleton NN cord-309556-xv3413k1 40 37 , , , cord-309556-xv3413k1 40 38 among among IN cord-309556-xv3413k1 40 39 other other JJ cord-309556-xv3413k1 40 40 pathways pathway NNS cord-309556-xv3413k1 40 41 ( ( -LRB- cord-309556-xv3413k1 40 42 Figure figure NN cord-309556-xv3413k1 40 43 _SP cord-309556-xv3413k1 40 44 2c 2c NN cord-309556-xv3413k1 40 45 ) ) -RRB- cord-309556-xv3413k1 40 46 . . . cord-309556-xv3413k1 41 1 As as IN cord-309556-xv3413k1 41 2 for for IN cord-309556-xv3413k1 41 3 the the DT cord-309556-xv3413k1 41 4 AT2-enriched AT2-enriched NNP cord-309556-xv3413k1 41 5 genes gene NNS cord-309556-xv3413k1 41 6 that that WDT cord-309556-xv3413k1 41 7 decreased decrease VBD cord-309556-xv3413k1 41 8 in in IN cord-309556-xv3413k1 41 9 expression expression NN cord-309556-xv3413k1 41 10 with with IN cord-309556-xv3413k1 41 11 age age NN cord-309556-xv3413k1 41 12 , , , cord-309556-xv3413k1 41 13 gene gene NN cord-309556-xv3413k1 41 14 ontology ontology NN cord-309556-xv3413k1 41 15 analysis analysis NN cord-309556-xv3413k1 41 16 revealed reveal VBD cord-309556-xv3413k1 41 17 enrichment enrichment NN cord-309556-xv3413k1 41 18 for for IN cord-309556-xv3413k1 41 19 metabolic metabolic JJ cord-309556-xv3413k1 41 20 pathways pathway NNS cord-309556-xv3413k1 41 21 , , , cord-309556-xv3413k1 41 22 biosynthesis biosynthesis NN cord-309556-xv3413k1 41 23 of of IN cord-309556-xv3413k1 41 24 antibiotics antibiotic NNS cord-309556-xv3413k1 41 25 , , , cord-309556-xv3413k1 41 26 lipid lipid NN cord-309556-xv3413k1 41 27 metabolism metabolism NN cord-309556-xv3413k1 41 28 , , , cord-309556-xv3413k1 41 29 extracellular extracellular JJ cord-309556-xv3413k1 41 30 exosome exosome NN cord-309556-xv3413k1 41 31 , , , cord-309556-xv3413k1 41 32 and and CC cord-309556-xv3413k1 41 33 mitochondrial mitochondrial NN cord-309556-xv3413k1 41 34 matrix matrix NN cord-309556-xv3413k1 41 35 ( ( -LRB- cord-309556-xv3413k1 41 36 Figure Figure NNP cord-309556-xv3413k1 41 37 2d 2d CD cord-309556-xv3413k1 41 38 ) ) -RRB- cord-309556-xv3413k1 41 39 . . . cord-309556-xv3413k1 42 1 A a DT cord-309556-xv3413k1 42 2 subset subset NN cord-309556-xv3413k1 42 3 of of IN cord-309556-xv3413k1 42 4 these these DT cord-309556-xv3413k1 42 5 enriched enrich VBN cord-309556-xv3413k1 42 6 gene gene NN cord-309556-xv3413k1 42 7 ontologies ontology NNS cord-309556-xv3413k1 42 8 had have VBD cord-309556-xv3413k1 42 9 also also RB cord-309556-xv3413k1 42 10 been be VBN cord-309556-xv3413k1 42 11 identified identify VBN cord-309556-xv3413k1 42 12 by by IN cord-309556-xv3413k1 42 13 the the DT cord-309556-xv3413k1 42 14 bulk bulk JJ cord-309556-xv3413k1 42 15 RNA RNA NNP cord-309556-xv3413k1 42 16 - - HYPH cord-309556-xv3413k1 42 17 seq seq NN cord-309556-xv3413k1 42 18 analysis analysis NN cord-309556-xv3413k1 42 19 ( ( -LRB- cord-309556-xv3413k1 42 20 Figure figure NN cord-309556-xv3413k1 42 21 1e 1e NNP cord-309556-xv3413k1 42 22 - - HYPH cord-309556-xv3413k1 42 23 f f NNP cord-309556-xv3413k1 42 24 ) ) -RRB- cord-309556-xv3413k1 42 25 . . . cord-309556-xv3413k1 43 1 Thus thus RB cord-309556-xv3413k1 43 2 , , , cord-309556-xv3413k1 43 3 integrative integrative JJ cord-309556-xv3413k1 43 4 analysis analysis NN cord-309556-xv3413k1 43 5 of of IN cord-309556-xv3413k1 43 6 bulk bulk JJ cord-309556-xv3413k1 43 7 and and CC cord-309556-xv3413k1 43 8 single single JJ cord-309556-xv3413k1 43 9 - - HYPH cord-309556-xv3413k1 43 10 cell cell NN cord-309556-xv3413k1 43 11 transcriptomes transcriptome NNS cord-309556-xv3413k1 43 12 revealed reveal VBD cord-309556-xv3413k1 43 13 that that IN cord-309556-xv3413k1 43 14 many many JJ cord-309556-xv3413k1 43 15 of of IN cord-309556-xv3413k1 43 16 the the DT cord-309556-xv3413k1 43 17 age age NN cord-309556-xv3413k1 43 18 - - HYPH cord-309556-xv3413k1 43 19 associated associate VBN cord-309556-xv3413k1 43 20 transcriptional transcriptional JJ cord-309556-xv3413k1 43 21 changes change NNS cord-309556-xv3413k1 43 22 in in IN cord-309556-xv3413k1 43 23 human human JJ cord-309556-xv3413k1 43 24 lung lung NN cord-309556-xv3413k1 43 25 can can MD cord-309556-xv3413k1 43 26 be be VB cord-309556-xv3413k1 43 27 mapped map VBN cord-309556-xv3413k1 43 28 to to IN cord-309556-xv3413k1 43 29 specific specific JJ cord-309556-xv3413k1 43 30 cell cell NN cord-309556-xv3413k1 43 31 subpopulations subpopulation NNS cord-309556-xv3413k1 43 32 , , , cord-309556-xv3413k1 43 33 suggesting suggest VBG cord-309556-xv3413k1 43 34 that that IN cord-309556-xv3413k1 43 35 the the DT cord-309556-xv3413k1 43 36 overall overall JJ cord-309556-xv3413k1 43 37 abundance abundance NN cord-309556-xv3413k1 43 38 of of IN cord-309556-xv3413k1 43 39 these these DT cord-309556-xv3413k1 43 40 cell cell NN cord-309556-xv3413k1 43 41 types type NNS cord-309556-xv3413k1 43 42 , , , cord-309556-xv3413k1 43 43 their -PRON- PRP$ cord-309556-xv3413k1 43 44 transcriptional transcriptional JJ cord-309556-xv3413k1 43 45 status status NN cord-309556-xv3413k1 43 46 , , , cord-309556-xv3413k1 43 47 or or CC cord-309556-xv3413k1 43 48 both both DT cord-309556-xv3413k1 43 49 , , , cord-309556-xv3413k1 43 50 may may MD cord-309556-xv3413k1 43 51 be be VB cord-309556-xv3413k1 43 52 altered alter VBN cord-309556-xv3413k1 43 53 with with IN cord-309556-xv3413k1 43 54 aging age VBG cord-309556-xv3413k1 43 55 . . . cord-309556-xv3413k1 44 1 As as IN cord-309556-xv3413k1 44 2 the the DT cord-309556-xv3413k1 44 3 pathophysiology pathophysiology NN cord-309556-xv3413k1 44 4 of of IN cord-309556-xv3413k1 44 5 viral viral JJ cord-309556-xv3413k1 44 6 - - HYPH cord-309556-xv3413k1 44 7 induced induce VBN cord-309556-xv3413k1 44 8 ARDS ARDS NNP cord-309556-xv3413k1 44 9 involves involve VBZ cord-309556-xv3413k1 44 10 an an DT cord-309556-xv3413k1 44 11 intricate intricate JJ cord-309556-xv3413k1 44 12 interplay interplay NN cord-309556-xv3413k1 44 13 of of IN cord-309556-xv3413k1 44 14 diverse diverse JJ cord-309556-xv3413k1 44 15 cell cell NN cord-309556-xv3413k1 44 16 types type NNS cord-309556-xv3413k1 44 17 , , , cord-309556-xv3413k1 44 18 most most RBS cord-309556-xv3413k1 44 19 notably notably RB cord-309556-xv3413k1 44 20 the the DT cord-309556-xv3413k1 44 21 immune immune JJ cord-309556-xv3413k1 44 22 system system NN cord-309556-xv3413k1 44 23 43 43 CD cord-309556-xv3413k1 44 24 , , , cord-309556-xv3413k1 44 25 44 44 CD cord-309556-xv3413k1 44 26 , , , cord-309556-xv3413k1 44 27 aging age VBG cord-309556-xv3413k1 44 28 - - HYPH cord-309556-xv3413k1 44 29 associated associate VBN cord-309556-xv3413k1 44 30 shifts shift NNS cord-309556-xv3413k1 44 31 in in IN cord-309556-xv3413k1 44 32 the the DT cord-309556-xv3413k1 44 33 lung lung NN cord-309556-xv3413k1 44 34 cellular cellular JJ cord-309556-xv3413k1 44 35 milieu milieu NN cord-309556-xv3413k1 44 36 23 23 CD cord-309556-xv3413k1 44 37 could could MD cord-309556-xv3413k1 44 38 contribute contribute VB cord-309556-xv3413k1 44 39 an an DT cord-309556-xv3413k1 44 40 important important JJ cord-309556-xv3413k1 44 41 dimension dimension NN cord-309556-xv3413k1 44 42 to to IN cord-309556-xv3413k1 44 43 the the DT cord-309556-xv3413k1 44 44 relationship relationship NN cord-309556-xv3413k1 44 45 between between IN cord-309556-xv3413k1 44 46 age age NN cord-309556-xv3413k1 44 47 and and CC cord-309556-xv3413k1 44 48 risk risk NN cord-309556-xv3413k1 44 49 of of IN cord-309556-xv3413k1 44 50 ARDS ARDS NNP cord-309556-xv3413k1 44 51 in in IN cord-309556-xv3413k1 44 52 patients patient NNS cord-309556-xv3413k1 44 53 with with IN cord-309556-xv3413k1 44 54 COVID-19 COVID-19 NNP cord-309556-xv3413k1 44 55 31 31 CD cord-309556-xv3413k1 44 56 . . . cord-309556-xv3413k1 45 1 To to TO cord-309556-xv3413k1 45 2 investigate investigate VB cord-309556-xv3413k1 45 3 the the DT cord-309556-xv3413k1 45 4 cellular cellular JJ cord-309556-xv3413k1 45 5 landscape landscape NN cord-309556-xv3413k1 45 6 of of IN cord-309556-xv3413k1 45 7 the the DT cord-309556-xv3413k1 45 8 aging age VBG cord-309556-xv3413k1 45 9 lung lung NN cord-309556-xv3413k1 45 10 , , , cord-309556-xv3413k1 45 11 we -PRON- PRP cord-309556-xv3413k1 45 12 applied apply VBD cord-309556-xv3413k1 45 13 a a DT cord-309556-xv3413k1 45 14 gene gene NN cord-309556-xv3413k1 45 15 signature signature NN cord-309556-xv3413k1 45 16 - - HYPH cord-309556-xv3413k1 45 17 based base VBN cord-309556-xv3413k1 45 18 approach approach NN cord-309556-xv3413k1 45 19 45 45 CD cord-309556-xv3413k1 45 20 to to TO cord-309556-xv3413k1 45 21 infer infer VB cord-309556-xv3413k1 45 22 the the DT cord-309556-xv3413k1 45 23 enrichment enrichment NN cord-309556-xv3413k1 45 24 of of IN cord-309556-xv3413k1 45 25 different different JJ cord-309556-xv3413k1 45 26 cell cell NN cord-309556-xv3413k1 45 27 types type NNS cord-309556-xv3413k1 45 28 from from IN cord-309556-xv3413k1 45 29 the the DT cord-309556-xv3413k1 45 30 bulk bulk JJ cord-309556-xv3413k1 45 31 RNA RNA NNP cord-309556-xv3413k1 45 32 - - HYPH cord-309556-xv3413k1 45 33 seq seq NN cord-309556-xv3413k1 45 34 profiles profile NNS cord-309556-xv3413k1 45 35 . . . cord-309556-xv3413k1 46 1 Since since IN cord-309556-xv3413k1 46 2 bulk bulk JJ cord-309556-xv3413k1 46 3 RNA RNA NNP cord-309556-xv3413k1 46 4 - - HYPH cord-309556-xv3413k1 46 5 seq seq NN cord-309556-xv3413k1 46 6 measures measure VBZ cord-309556-xv3413k1 46 7 the the DT cord-309556-xv3413k1 46 8 average average JJ cord-309556-xv3413k1 46 9 expression expression NN cord-309556-xv3413k1 46 10 of of IN cord-309556-xv3413k1 46 11 genes gene NNS cord-309556-xv3413k1 46 12 within within IN cord-309556-xv3413k1 46 13 a a DT cord-309556-xv3413k1 46 14 cell cell NN cord-309556-xv3413k1 46 15 population population NN cord-309556-xv3413k1 46 16 , , , cord-309556-xv3413k1 46 17 such such JJ cord-309556-xv3413k1 46 18 datasets dataset NNS cord-309556-xv3413k1 46 19 will will MD cord-309556-xv3413k1 46 20 reflect reflect VB cord-309556-xv3413k1 46 21 the the DT cord-309556-xv3413k1 46 22 relative relative JJ cord-309556-xv3413k1 46 23 proportions proportion NNS cord-309556-xv3413k1 46 24 of of IN cord-309556-xv3413k1 46 25 the the DT cord-309556-xv3413k1 46 26 cell cell NN cord-309556-xv3413k1 46 27 types type NNS cord-309556-xv3413k1 46 28 that that WDT cord-309556-xv3413k1 46 29 comprised comprise VBD cord-309556-xv3413k1 46 30 the the DT cord-309556-xv3413k1 46 31 input input NN cord-309556-xv3413k1 46 32 population population NN cord-309556-xv3413k1 46 33 , , , cord-309556-xv3413k1 46 34 though though IN cord-309556-xv3413k1 46 35 with with IN cord-309556-xv3413k1 46 36 the the DT cord-309556-xv3413k1 46 37 caveat caveat NN cord-309556-xv3413k1 46 38 that that IN cord-309556-xv3413k1 46 39 cell cell NN cord-309556-xv3413k1 46 40 types type NNS cord-309556-xv3413k1 46 41 can can MD cord-309556-xv3413k1 46 42 have have VB cord-309556-xv3413k1 46 43 overlapping overlapping JJ cord-309556-xv3413k1 46 44 expression expression NN cord-309556-xv3413k1 46 45 profiles profile NNS cord-309556-xv3413k1 46 46 and and CC cord-309556-xv3413k1 46 47 such such JJ cord-309556-xv3413k1 46 48 profiles profile NNS cord-309556-xv3413k1 46 49 may may MD cord-309556-xv3413k1 46 50 be be VB cord-309556-xv3413k1 46 51 altered alter VBN cord-309556-xv3413k1 46 52 in in IN cord-309556-xv3413k1 46 53 response response NN cord-309556-xv3413k1 46 54 to to IN cord-309556-xv3413k1 46 55 stimuli stimulus NNS cord-309556-xv3413k1 46 56 . . . cord-309556-xv3413k1 47 1 Using use VBG cord-309556-xv3413k1 47 2 this this DT cord-309556-xv3413k1 47 3 approach approach NN cord-309556-xv3413k1 47 4 , , , cord-309556-xv3413k1 47 5 we -PRON- PRP cord-309556-xv3413k1 47 6 identified identify VBD cord-309556-xv3413k1 47 7 ageassociated ageassociated JJ cord-309556-xv3413k1 47 8 alterations alteration NNS cord-309556-xv3413k1 47 9 in in IN cord-309556-xv3413k1 47 10 the the DT cord-309556-xv3413k1 47 11 enrichment enrichment NN cord-309556-xv3413k1 47 12 scores score NNS cord-309556-xv3413k1 47 13 of of IN cord-309556-xv3413k1 47 14 several several JJ cord-309556-xv3413k1 47 15 cell cell NN cord-309556-xv3413k1 47 16 types type NNS cord-309556-xv3413k1 47 17 ( ( -LRB- cord-309556-xv3413k1 47 18 Figure figure NN cord-309556-xv3413k1 47 19 3a 3a CD cord-309556-xv3413k1 47 20 ) ) -RRB- cord-309556-xv3413k1 47 21 . . . cord-309556-xv3413k1 48 1 Whereas whereas IN cord-309556-xv3413k1 48 2 epithelial epithelial JJ cord-309556-xv3413k1 48 3 cells cell NNS cord-309556-xv3413k1 48 4 decreased decrease VBD cord-309556-xv3413k1 48 5 with with IN cord-309556-xv3413k1 48 6 age age NN cord-309556-xv3413k1 48 7 , , , cord-309556-xv3413k1 48 8 fibroblasts fibroblast NNS cord-309556-xv3413k1 48 9 increased increase VBD cord-309556-xv3413k1 48 10 with with IN cord-309556-xv3413k1 48 11 age age NN cord-309556-xv3413k1 48 12 ( ( -LRB- cord-309556-xv3413k1 48 13 Figure figure NN cord-309556-xv3413k1 48 14 3b 3b CD cord-309556-xv3413k1 48 15 ) ) -RRB- cord-309556-xv3413k1 48 16 . . . cord-309556-xv3413k1 49 1 This this DT cord-309556-xv3413k1 49 2 finding finding NN cord-309556-xv3413k1 49 3 is be VBZ cord-309556-xv3413k1 49 4 consistent consistent JJ cord-309556-xv3413k1 49 5 with with IN cord-309556-xv3413k1 49 6 the the DT cord-309556-xv3413k1 49 7 progressive progressive JJ cord-309556-xv3413k1 49 8 loss loss NN cord-309556-xv3413k1 49 9 of of IN cord-309556-xv3413k1 49 10 lung lung NN cord-309556-xv3413k1 49 11 parenchyma parenchyma NN cord-309556-xv3413k1 49 12 due due JJ cord-309556-xv3413k1 49 13 to to IN cord-309556-xv3413k1 49 14 reduced reduce VBN cord-309556-xv3413k1 49 15 regenerative regenerative JJ cord-309556-xv3413k1 49 16 capacity capacity NN cord-309556-xv3413k1 49 17 of of IN cord-309556-xv3413k1 49 18 the the DT cord-309556-xv3413k1 49 19 aging age VBG cord-309556-xv3413k1 49 20 lung lung NN cord-309556-xv3413k1 49 21 46 46 CD cord-309556-xv3413k1 49 22 , , , cord-309556-xv3413k1 49 23 as as RB cord-309556-xv3413k1 49 24 well well RB cord-309556-xv3413k1 49 25 as as IN cord-309556-xv3413k1 49 26 the the DT cord-309556-xv3413k1 49 27 increased increase VBN cord-309556-xv3413k1 49 28 risk risk NN cord-309556-xv3413k1 49 29 for for IN cord-309556-xv3413k1 49 30 diseases disease NNS cord-309556-xv3413k1 49 31 such such JJ cord-309556-xv3413k1 49 32 as as IN cord-309556-xv3413k1 49 33 chronic chronic JJ cord-309556-xv3413k1 49 34 obstructive obstructive JJ cord-309556-xv3413k1 49 35 pulmonary pulmonary JJ cord-309556-xv3413k1 49 36 disease disease NN cord-309556-xv3413k1 49 37 and and CC cord-309556-xv3413k1 49 38 pulmonary pulmonary JJ cord-309556-xv3413k1 49 39 fibrosis fibrosis NN cord-309556-xv3413k1 49 40 47 47 CD cord-309556-xv3413k1 49 41 . . . cord-309556-xv3413k1 50 1 In in IN cord-309556-xv3413k1 50 2 addition addition NN cord-309556-xv3413k1 50 3 , , , cord-309556-xv3413k1 50 4 these these DT cord-309556-xv3413k1 50 5 results result NNS cord-309556-xv3413k1 50 6 are be VBP cord-309556-xv3413k1 50 7 concordant concordant JJ cord-309556-xv3413k1 50 8 with with IN cord-309556-xv3413k1 50 9 the the DT cord-309556-xv3413k1 50 10 findings finding NNS cord-309556-xv3413k1 50 11 from from IN cord-309556-xv3413k1 50 12 analysis analysis NN cord-309556-xv3413k1 50 13 of of IN cord-309556-xv3413k1 50 14 human human JJ cord-309556-xv3413k1 50 15 lung lung NN cord-309556-xv3413k1 50 16 single single JJ cord-309556-xv3413k1 50 17 - - HYPH cord-309556-xv3413k1 50 18 cell cell NN cord-309556-xv3413k1 50 19 transcriptomes transcriptome NNS cord-309556-xv3413k1 50 20 ( ( -LRB- cord-309556-xv3413k1 50 21 Figure Figure NNP cord-309556-xv3413k1 50 22 2a 2a CD cord-309556-xv3413k1 50 23 - - HYPH cord-309556-xv3413k1 50 24 b b NN cord-309556-xv3413k1 50 25 ) ) -RRB- cord-309556-xv3413k1 50 26 . . . cord-309556-xv3413k1 51 1 Among among IN cord-309556-xv3413k1 51 2 the the DT cord-309556-xv3413k1 51 3 innate innate JJ cord-309556-xv3413k1 51 4 immune immune JJ cord-309556-xv3413k1 51 5 cell cell NN cord-309556-xv3413k1 51 6 populations population NNS cord-309556-xv3413k1 51 7 , , , cord-309556-xv3413k1 51 8 the the DT cord-309556-xv3413k1 51 9 enrichment enrichment NN cord-309556-xv3413k1 51 10 scores score NNS cord-309556-xv3413k1 51 11 of of IN cord-309556-xv3413k1 51 12 total total JJ cord-309556-xv3413k1 51 13 macrophages macrophage NNS cord-309556-xv3413k1 51 14 were be VBD cord-309556-xv3413k1 51 15 inversely inversely RB cord-309556-xv3413k1 51 16 associated associate VBN cord-309556-xv3413k1 51 17 with with IN cord-309556-xv3413k1 51 18 age age NN cord-309556-xv3413k1 51 19 ( ( -LRB- cord-309556-xv3413k1 51 20 Figure figure NN cord-309556-xv3413k1 51 21 3c 3c CD cord-309556-xv3413k1 51 22 ) ) -RRB- cord-309556-xv3413k1 51 23 . . . cord-309556-xv3413k1 52 1 Macrophages macrophage NNS cord-309556-xv3413k1 52 2 are be VBP cord-309556-xv3413k1 52 3 major major JJ cord-309556-xv3413k1 52 4 drivers driver NNS cord-309556-xv3413k1 52 5 of of IN cord-309556-xv3413k1 52 6 innate innate JJ cord-309556-xv3413k1 52 7 immune immune JJ cord-309556-xv3413k1 52 8 responses response NNS cord-309556-xv3413k1 52 9 in in IN cord-309556-xv3413k1 52 10 the the DT cord-309556-xv3413k1 52 11 lung lung NN cord-309556-xv3413k1 52 12 , , , cord-309556-xv3413k1 52 13 acting act VBG cord-309556-xv3413k1 52 14 as as IN cord-309556-xv3413k1 52 15 first first JJ cord-309556-xv3413k1 52 16 - - HYPH cord-309556-xv3413k1 52 17 responders responder NNS cord-309556-xv3413k1 52 18 against against IN cord-309556-xv3413k1 52 19 diverse diverse JJ cord-309556-xv3413k1 52 20 respiratory respiratory JJ cord-309556-xv3413k1 52 21 infections infection NNS cord-309556-xv3413k1 52 22 48 48 CD cord-309556-xv3413k1 52 23 . . . cord-309556-xv3413k1 53 1 Thus thus RB cord-309556-xv3413k1 53 2 , , , cord-309556-xv3413k1 53 3 the the DT cord-309556-xv3413k1 53 4 age age NN cord-309556-xv3413k1 53 5 - - HYPH cord-309556-xv3413k1 53 6 associated associate VBN cord-309556-xv3413k1 53 7 decrease decrease NN cord-309556-xv3413k1 53 8 in in IN cord-309556-xv3413k1 53 9 macrophage macrophage NN cord-309556-xv3413k1 53 10 abundance abundance NN cord-309556-xv3413k1 53 11 may may MD cord-309556-xv3413k1 53 12 be be VB cord-309556-xv3413k1 53 13 a a DT cord-309556-xv3413k1 53 14 possible possible JJ cord-309556-xv3413k1 53 15 factor factor NN cord-309556-xv3413k1 53 16 related relate VBN cord-309556-xv3413k1 53 17 to to IN cord-309556-xv3413k1 53 18 the the DT cord-309556-xv3413k1 53 19 greater great JJR cord-309556-xv3413k1 53 20 severity severity NN cord-309556-xv3413k1 53 21 of of IN cord-309556-xv3413k1 53 22 lung lung NN cord-309556-xv3413k1 53 23 pathology pathology NN cord-309556-xv3413k1 53 24 in in IN cord-309556-xv3413k1 53 25 patients patient NNS cord-309556-xv3413k1 53 26 with with IN cord-309556-xv3413k1 53 27 COVID-19 COVID-19 NNP cord-309556-xv3413k1 53 28 . . . cord-309556-xv3413k1 54 1 Although although IN cord-309556-xv3413k1 54 2 macrophage macrophage NN cord-309556-xv3413k1 54 3 accumulation accumulation NN cord-309556-xv3413k1 54 4 is be VBZ cord-309556-xv3413k1 54 5 often often RB cord-309556-xv3413k1 54 6 associated associate VBN cord-309556-xv3413k1 54 7 with with IN cord-309556-xv3413k1 54 8 the the DT cord-309556-xv3413k1 54 9 pathologic pathologic JJ cord-309556-xv3413k1 54 10 inflammation inflammation NN cord-309556-xv3413k1 54 11 of of IN cord-309556-xv3413k1 54 12 viral viral JJ cord-309556-xv3413k1 54 13 ARDS ARDS NNP cord-309556-xv3413k1 54 14 49 49 CD cord-309556-xv3413k1 54 15 , , , cord-309556-xv3413k1 54 16 50 50 CD cord-309556-xv3413k1 54 17 , , , cord-309556-xv3413k1 54 18 pulmonary pulmonary JJ cord-309556-xv3413k1 54 19 macrophages macrophage NNS cord-309556-xv3413k1 54 20 can can MD cord-309556-xv3413k1 54 21 act act VB cord-309556-xv3413k1 54 22 to to TO cord-309556-xv3413k1 54 23 limit limit VB cord-309556-xv3413k1 54 24 the the DT cord-309556-xv3413k1 54 25 duration duration NN cord-309556-xv3413k1 54 26 and and CC cord-309556-xv3413k1 54 27 severity severity NN cord-309556-xv3413k1 54 28 of of IN cord-309556-xv3413k1 54 29 infection infection NN cord-309556-xv3413k1 54 30 by by IN cord-309556-xv3413k1 54 31 efficiently efficiently RB cord-309556-xv3413k1 54 32 phagocytosing phagocytose VBG cord-309556-xv3413k1 54 33 dead dead JJ cord-309556-xv3413k1 54 34 infected infected JJ cord-309556-xv3413k1 54 35 cells cell NNS cord-309556-xv3413k1 54 36 and and CC cord-309556-xv3413k1 54 37 released release VBN cord-309556-xv3413k1 54 38 virions virion NNS cord-309556-xv3413k1 54 39 [ [ -LRB- cord-309556-xv3413k1 54 40 51 51 CD cord-309556-xv3413k1 54 41 ] ] -RRB- cord-309556-xv3413k1 55 1 [ [ -LRB- cord-309556-xv3413k1 55 2 52 52 CD cord-309556-xv3413k1 55 3 ] ] -RRB- cord-309556-xv3413k1 56 1 [ [ -LRB- cord-309556-xv3413k1 56 2 53 53 CD cord-309556-xv3413k1 56 3 ] ] -RRB- cord-309556-xv3413k1 56 4 . . . cord-309556-xv3413k1 57 1 Notably notably RB cord-309556-xv3413k1 57 2 , , , cord-309556-xv3413k1 57 3 macrophages macrophage NNS cord-309556-xv3413k1 57 4 infected infect VBN cord-309556-xv3413k1 57 5 with with IN cord-309556-xv3413k1 57 6 SARS SARS NNP cord-309556-xv3413k1 57 7 - - HYPH cord-309556-xv3413k1 57 8 CoV CoV NNP cord-309556-xv3413k1 57 9 have have VBP cord-309556-xv3413k1 57 10 been be VBN cord-309556-xv3413k1 57 11 found find VBN cord-309556-xv3413k1 57 12 to to TO cord-309556-xv3413k1 57 13 abort abort VB cord-309556-xv3413k1 57 14 the the DT cord-309556-xv3413k1 57 15 replication replication NN cord-309556-xv3413k1 57 16 cycle cycle NN cord-309556-xv3413k1 57 17 of of IN cord-309556-xv3413k1 57 18 the the DT cord-309556-xv3413k1 57 19 virus virus NN cord-309556-xv3413k1 57 20 54,55 54,55 CD cord-309556-xv3413k1 57 21 , , , cord-309556-xv3413k1 57 22 further further RB cord-309556-xv3413k1 57 23 supporting support VBG cord-309556-xv3413k1 57 24 their -PRON- PRP$ cord-309556-xv3413k1 57 25 role role NN cord-309556-xv3413k1 57 26 in in IN cord-309556-xv3413k1 57 27 antiviral antiviral JJ cord-309556-xv3413k1 57 28 responses response NNS cord-309556-xv3413k1 57 29 . . . cord-309556-xv3413k1 58 1 However however RB cord-309556-xv3413k1 58 2 , , , cord-309556-xv3413k1 58 3 macrophages macrophage NNS cord-309556-xv3413k1 58 4 may may MD cord-309556-xv3413k1 58 5 suppress suppress VB cord-309556-xv3413k1 58 6 antiviral antiviral JJ cord-309556-xv3413k1 58 7 adaptive adaptive JJ cord-309556-xv3413k1 58 8 immune immune JJ cord-309556-xv3413k1 58 9 responses response NNS cord-309556-xv3413k1 58 10 48 48 CD cord-309556-xv3413k1 58 11 , , , cord-309556-xv3413k1 58 12 56 56 CD cord-309556-xv3413k1 58 13 , , , cord-309556-xv3413k1 58 14 inhibiting inhibit VBG cord-309556-xv3413k1 58 15 viral viral JJ cord-309556-xv3413k1 58 16 clearance clearance NN cord-309556-xv3413k1 58 17 in in IN cord-309556-xv3413k1 58 18 mouse mouse NN cord-309556-xv3413k1 58 19 models model NNS cord-309556-xv3413k1 58 20 of of IN cord-309556-xv3413k1 58 21 SARS SARS NNP cord-309556-xv3413k1 58 22 - - HYPH cord-309556-xv3413k1 58 23 CoV CoV NNP cord-309556-xv3413k1 58 24 infection infection NN cord-309556-xv3413k1 58 25 57 57 CD cord-309556-xv3413k1 58 26 . . . cord-309556-xv3413k1 59 1 In in IN cord-309556-xv3413k1 59 2 aggregate aggregate NN cord-309556-xv3413k1 59 3 , , , cord-309556-xv3413k1 59 4 these these DT cord-309556-xv3413k1 59 5 prior prior JJ cord-309556-xv3413k1 59 6 reports report NNS cord-309556-xv3413k1 59 7 suggest suggest VBP cord-309556-xv3413k1 59 8 that that IN cord-309556-xv3413k1 59 9 the the DT cord-309556-xv3413k1 59 10 precise precise JJ cord-309556-xv3413k1 59 11 role role NN cord-309556-xv3413k1 59 12 of of IN cord-309556-xv3413k1 59 13 lung lung NN cord-309556-xv3413k1 59 14 macrophages macrophage NNS cord-309556-xv3413k1 59 15 in in IN cord-309556-xv3413k1 59 16 SARS SARS NNP cord-309556-xv3413k1 59 17 - - HYPH cord-309556-xv3413k1 59 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 59 19 pathophysiology pathophysiology NN cord-309556-xv3413k1 59 20 is be VBZ cord-309556-xv3413k1 59 21 likely likely RB cord-309556-xv3413k1 59 22 contextdependent contextdependent JJ cord-309556-xv3413k1 59 23 . . . cord-309556-xv3413k1 60 1 It -PRON- PRP cord-309556-xv3413k1 60 2 is be VBZ cord-309556-xv3413k1 60 3 also also RB cord-309556-xv3413k1 60 4 plausible plausible JJ cord-309556-xv3413k1 60 5 that that IN cord-309556-xv3413k1 60 6 the the DT cord-309556-xv3413k1 60 7 increased increase VBN cord-309556-xv3413k1 60 8 numbers number NNS cord-309556-xv3413k1 60 9 of of IN cord-309556-xv3413k1 60 10 macrophages macrophage NNS cord-309556-xv3413k1 60 11 are be VBP cord-309556-xv3413k1 60 12 not not RB cord-309556-xv3413k1 60 13 the the DT cord-309556-xv3413k1 60 14 primary primary JJ cord-309556-xv3413k1 60 15 distinction distinction NN cord-309556-xv3413k1 60 16 between between IN cord-309556-xv3413k1 60 17 young young JJ cord-309556-xv3413k1 60 18 and and CC cord-309556-xv3413k1 60 19 old old JJ cord-309556-xv3413k1 60 20 patients patient NNS cord-309556-xv3413k1 60 21 , , , cord-309556-xv3413k1 60 22 but but CC cord-309556-xv3413k1 60 23 rather rather RB cord-309556-xv3413k1 60 24 the the DT cord-309556-xv3413k1 60 25 functional functional JJ cord-309556-xv3413k1 60 26 status status NN cord-309556-xv3413k1 60 27 of of IN cord-309556-xv3413k1 60 28 the the DT cord-309556-xv3413k1 60 29 macrophages macrophage NNS cord-309556-xv3413k1 60 30 . . . cord-309556-xv3413k1 61 1 In in IN cord-309556-xv3413k1 61 2 line line NN cord-309556-xv3413k1 61 3 with with IN cord-309556-xv3413k1 61 4 this this DT cord-309556-xv3413k1 61 5 , , , cord-309556-xv3413k1 61 6 we -PRON- PRP cord-309556-xv3413k1 61 7 observed observe VBD cord-309556-xv3413k1 61 8 that that IN cord-309556-xv3413k1 61 9 the the DT cord-309556-xv3413k1 61 10 age age NN cord-309556-xv3413k1 61 11 - - HYPH cord-309556-xv3413k1 61 12 associated associate VBN cord-309556-xv3413k1 61 13 changes change NNS cord-309556-xv3413k1 61 14 in in IN cord-309556-xv3413k1 61 15 macrophages macrophage NNS cord-309556-xv3413k1 61 16 were be VBD cord-309556-xv3413k1 61 17 specifically specifically RB cord-309556-xv3413k1 61 18 attributed attribute VBN cord-309556-xv3413k1 61 19 to to IN cord-309556-xv3413k1 61 20 the the DT cord-309556-xv3413k1 61 21 pro pro JJ cord-309556-xv3413k1 61 22 - - JJ cord-309556-xv3413k1 61 23 inflammatory inflammatory JJ cord-309556-xv3413k1 61 24 M1 M1 NNP cord-309556-xv3413k1 61 25 macrophage macrophage NN cord-309556-xv3413k1 61 26 subset subset VBN cord-309556-xv3413k1 61 27 but but CC cord-309556-xv3413k1 61 28 not not RB cord-309556-xv3413k1 61 29 the the DT cord-309556-xv3413k1 61 30 immunoregulatory immunoregulatory JJ cord-309556-xv3413k1 61 31 M2 M2 NNP cord-309556-xv3413k1 61 32 subset subset VBN cord-309556-xv3413k1 61 33 58 58 CD cord-309556-xv3413k1 61 34 ( ( -LRB- cord-309556-xv3413k1 61 35 Figure figure NN cord-309556-xv3413k1 61 36 3c 3c CD cord-309556-xv3413k1 61 37 ) ) -RRB- cord-309556-xv3413k1 61 38 , , , cord-309556-xv3413k1 61 39 though though IN cord-309556-xv3413k1 61 40 this this DT cord-309556-xv3413k1 61 41 binary binary JJ cord-309556-xv3413k1 61 42 classification classification NN cord-309556-xv3413k1 61 43 scheme scheme NN cord-309556-xv3413k1 61 44 represents represent VBZ cord-309556-xv3413k1 61 45 an an DT cord-309556-xv3413k1 61 46 oversimplification oversimplification NN cord-309556-xv3413k1 61 47 of of IN cord-309556-xv3413k1 61 48 macrophage macrophage NN cord-309556-xv3413k1 61 49 function function NN cord-309556-xv3413k1 61 50 . . . cord-309556-xv3413k1 62 1 Nevertheless nevertheless RB cord-309556-xv3413k1 62 2 , , , cord-309556-xv3413k1 62 3 elucidating elucidate VBG cord-309556-xv3413k1 62 4 the the DT cord-309556-xv3413k1 62 5 consequences consequence NNS cord-309556-xv3413k1 62 6 of of IN cord-309556-xv3413k1 62 7 age age NN cord-309556-xv3413k1 62 8 - - HYPH cord-309556-xv3413k1 62 9 associated associate VBN cord-309556-xv3413k1 62 10 changes change NNS cord-309556-xv3413k1 62 11 in in IN cord-309556-xv3413k1 62 12 lung lung NN cord-309556-xv3413k1 62 13 macrophages macrophage NNS cord-309556-xv3413k1 62 14 may may MD cord-309556-xv3413k1 62 15 reveal reveal VB cord-309556-xv3413k1 62 16 insights insight NNS cord-309556-xv3413k1 62 17 into into IN cord-309556-xv3413k1 62 18 the the DT cord-309556-xv3413k1 62 19 differential differential JJ cord-309556-xv3413k1 62 20 outcomes outcome NNS cord-309556-xv3413k1 62 21 of of IN cord-309556-xv3413k1 62 22 older old JJR cord-309556-xv3413k1 62 23 patients patient NNS cord-309556-xv3413k1 62 24 with with IN cord-309556-xv3413k1 62 25 COVID-19 COVID-19 NNP cord-309556-xv3413k1 62 26 . . . cord-309556-xv3413k1 63 1 Further further JJ cord-309556-xv3413k1 63 2 studies study NNS cord-309556-xv3413k1 63 3 are be VBP cord-309556-xv3413k1 63 4 needed need VBN cord-309556-xv3413k1 63 5 to to TO cord-309556-xv3413k1 63 6 investigate investigate VB cord-309556-xv3413k1 63 7 whether whether IN cord-309556-xv3413k1 63 8 macrophages macrophage NNS cord-309556-xv3413k1 63 9 or or CC cord-309556-xv3413k1 63 10 other other JJ cord-309556-xv3413k1 63 11 innate innate JJ cord-309556-xv3413k1 63 12 immune immune JJ cord-309556-xv3413k1 63 13 cells cell NNS cord-309556-xv3413k1 63 14 respond respond VBP cord-309556-xv3413k1 63 15 to to IN cord-309556-xv3413k1 63 16 SARS SARS NNP cord-309556-xv3413k1 63 17 - - HYPH cord-309556-xv3413k1 63 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 63 19 infection infection NN cord-309556-xv3413k1 63 20 , , , cord-309556-xv3413k1 63 21 and and CC cord-309556-xv3413k1 63 22 how how WRB cord-309556-xv3413k1 63 23 their -PRON- PRP$ cord-309556-xv3413k1 63 24 numbers number NNS cord-309556-xv3413k1 63 25 or or CC cord-309556-xv3413k1 63 26 function function NN cord-309556-xv3413k1 63 27 may may MD cord-309556-xv3413k1 63 28 change change VB cord-309556-xv3413k1 63 29 with with IN cord-309556-xv3413k1 63 30 aging age VBG cord-309556-xv3413k1 63 31 . . . cord-309556-xv3413k1 64 1 Among among IN cord-309556-xv3413k1 64 2 the the DT cord-309556-xv3413k1 64 3 adaptive adaptive JJ cord-309556-xv3413k1 64 4 immune immune JJ cord-309556-xv3413k1 64 5 cell cell NN cord-309556-xv3413k1 64 6 populations population NNS cord-309556-xv3413k1 64 7 , , , cord-309556-xv3413k1 64 8 we -PRON- PRP cord-309556-xv3413k1 64 9 observed observe VBD cord-309556-xv3413k1 64 10 that that IN cord-309556-xv3413k1 64 11 Th1 th1 NN cord-309556-xv3413k1 64 12 cells cell NNS cord-309556-xv3413k1 64 13 and and CC cord-309556-xv3413k1 64 14 CD4 CD4 NNP cord-309556-xv3413k1 64 15 + + CC cord-309556-xv3413k1 64 16 Tcm Tcm NNP cord-309556-xv3413k1 64 17 cells cell NNS cord-309556-xv3413k1 64 18 trended trend VBD cord-309556-xv3413k1 64 19 in in IN cord-309556-xv3413k1 64 20 opposite opposite JJ cord-309556-xv3413k1 64 21 directions direction NNS cord-309556-xv3413k1 64 22 with with IN cord-309556-xv3413k1 64 23 aging age VBG cord-309556-xv3413k1 64 24 ( ( -LRB- cord-309556-xv3413k1 64 25 Figure Figure NNP cord-309556-xv3413k1 64 26 3d 3d NNP cord-309556-xv3413k1 64 27 ) ) -RRB- cord-309556-xv3413k1 64 28 . . . cord-309556-xv3413k1 65 1 While while IN cord-309556-xv3413k1 65 2 the the DT cord-309556-xv3413k1 65 3 lungs lung NNS cord-309556-xv3413k1 65 4 of of IN cord-309556-xv3413k1 65 5 younger young JJR cord-309556-xv3413k1 65 6 donors donor NNS cord-309556-xv3413k1 65 7 were be VBD cord-309556-xv3413k1 65 8 enriched enrich VBN cord-309556-xv3413k1 65 9 for for IN cord-309556-xv3413k1 65 10 Th1 th1 NN cord-309556-xv3413k1 65 11 cells cell NNS cord-309556-xv3413k1 65 12 , , , cord-309556-xv3413k1 65 13 they -PRON- PRP cord-309556-xv3413k1 65 14 were be VBD cord-309556-xv3413k1 65 15 comparatively comparatively RB cord-309556-xv3413k1 65 16 depleted deplete VBN cord-309556-xv3413k1 65 17 for for IN cord-309556-xv3413k1 65 18 CD4 CD4 NNP cord-309556-xv3413k1 65 19 + + CC cord-309556-xv3413k1 65 20 Tcm Tcm NNP cord-309556-xv3413k1 65 21 cells cell NNS cord-309556-xv3413k1 65 22 ; ; : cord-309556-xv3413k1 65 23 the the DT cord-309556-xv3413k1 65 24 inverse inverse NN cord-309556-xv3413k1 65 25 was be VBD cord-309556-xv3413k1 65 26 true true JJ cord-309556-xv3413k1 65 27 in in IN cord-309556-xv3413k1 65 28 the the DT cord-309556-xv3413k1 65 29 lungs lung NNS cord-309556-xv3413k1 65 30 of of IN cord-309556-xv3413k1 65 31 older old JJR cord-309556-xv3413k1 65 32 donors donor NNS cord-309556-xv3413k1 65 33 . . . cord-309556-xv3413k1 66 1 Of of IN cord-309556-xv3413k1 66 2 note note NN cord-309556-xv3413k1 66 3 , , , cord-309556-xv3413k1 66 4 mouse mouse NN cord-309556-xv3413k1 66 5 models model NNS cord-309556-xv3413k1 66 6 of of IN cord-309556-xv3413k1 66 7 SARS SARS NNP cord-309556-xv3413k1 66 8 - - HYPH cord-309556-xv3413k1 66 9 CoV CoV NNP cord-309556-xv3413k1 66 10 infection infection NN cord-309556-xv3413k1 66 11 have have VBP cord-309556-xv3413k1 66 12 indicated indicate VBN cord-309556-xv3413k1 66 13 important important JJ cord-309556-xv3413k1 66 14 roles role NNS cord-309556-xv3413k1 66 15 for for IN cord-309556-xv3413k1 66 16 CD4 CD4 NNP cord-309556-xv3413k1 66 17 + + CC cord-309556-xv3413k1 66 18 T T NNP cord-309556-xv3413k1 66 19 cell cell NN cord-309556-xv3413k1 66 20 responses response NNS cord-309556-xv3413k1 66 21 in in IN cord-309556-xv3413k1 66 22 viral viral JJ cord-309556-xv3413k1 66 23 clearance clearance NN cord-309556-xv3413k1 66 24 59 59 CD cord-309556-xv3413k1 66 25 , , , cord-309556-xv3413k1 66 26 60 60 CD cord-309556-xv3413k1 66 27 . . . cord-309556-xv3413k1 67 1 Additionally additionally RB cord-309556-xv3413k1 67 2 , , , cord-309556-xv3413k1 67 3 Th1 th1 NN cord-309556-xv3413k1 67 4 cells cell NNS cord-309556-xv3413k1 67 5 are be VBP cord-309556-xv3413k1 67 6 responsive responsive JJ cord-309556-xv3413k1 67 7 to to IN cord-309556-xv3413k1 67 8 SARS SARS NNP cord-309556-xv3413k1 67 9 - - HYPH cord-309556-xv3413k1 67 10 CoV CoV NNP cord-309556-xv3413k1 67 11 vaccines vaccine NNS cord-309556-xv3413k1 67 12 61 61 CD cord-309556-xv3413k1 67 13 and and CC cord-309556-xv3413k1 67 14 promote promote VB cord-309556-xv3413k1 67 15 macrophage macrophage NN cord-309556-xv3413k1 67 16 activation activation NN cord-309556-xv3413k1 67 17 against against IN cord-309556-xv3413k1 67 18 viruses virus NNS cord-309556-xv3413k1 67 19 62 62 CD cord-309556-xv3413k1 67 20 . . . cord-309556-xv3413k1 68 1 It -PRON- PRP cord-309556-xv3413k1 68 2 is be VBZ cord-309556-xv3413k1 68 3 therefore therefore RB cord-309556-xv3413k1 68 4 possible possible JJ cord-309556-xv3413k1 68 5 that that IN cord-309556-xv3413k1 68 6 age age NN cord-309556-xv3413k1 68 7 - - HYPH cord-309556-xv3413k1 68 8 associated associate VBN cord-309556-xv3413k1 68 9 shifts shift NNS cord-309556-xv3413k1 68 10 in in IN cord-309556-xv3413k1 68 11 CD4 CD4 NNP cord-309556-xv3413k1 68 12 + + CC cord-309556-xv3413k1 68 13 T t NN cord-309556-xv3413k1 68 14 cell cell NN cord-309556-xv3413k1 68 15 subtypes subtype NNS cord-309556-xv3413k1 68 16 within within IN cord-309556-xv3413k1 68 17 the the DT cord-309556-xv3413k1 68 18 lung lung NN cord-309556-xv3413k1 68 19 may may MD cord-309556-xv3413k1 68 20 influence influence VB cord-309556-xv3413k1 68 21 the the DT cord-309556-xv3413k1 68 22 subsequent subsequent JJ cord-309556-xv3413k1 68 23 host host NN cord-309556-xv3413k1 68 24 immune immune JJ cord-309556-xv3413k1 68 25 response response NN cord-309556-xv3413k1 68 26 in in IN cord-309556-xv3413k1 68 27 response response NN cord-309556-xv3413k1 68 28 to to IN cord-309556-xv3413k1 68 29 coronavirus coronavirus NN cord-309556-xv3413k1 68 30 infection infection NN cord-309556-xv3413k1 68 31 . . . cord-309556-xv3413k1 69 1 However however RB cord-309556-xv3413k1 69 2 , , , cord-309556-xv3413k1 69 3 future future JJ cord-309556-xv3413k1 69 4 studies study NNS cord-309556-xv3413k1 69 5 will will MD cord-309556-xv3413k1 69 6 be be VB cord-309556-xv3413k1 69 7 needed need VBN cord-309556-xv3413k1 69 8 to to TO cord-309556-xv3413k1 69 9 determine determine VB cord-309556-xv3413k1 69 10 the the DT cord-309556-xv3413k1 69 11 role role NN cord-309556-xv3413k1 69 12 of of IN cord-309556-xv3413k1 69 13 Th1 th1 NN cord-309556-xv3413k1 69 14 cells cell NNS cord-309556-xv3413k1 69 15 and and CC cord-309556-xv3413k1 69 16 other other JJ cord-309556-xv3413k1 69 17 adaptive adaptive JJ cord-309556-xv3413k1 69 18 immune immune JJ cord-309556-xv3413k1 69 19 cells cell NNS cord-309556-xv3413k1 69 20 in in IN cord-309556-xv3413k1 69 21 the the DT cord-309556-xv3413k1 69 22 response response NN cord-309556-xv3413k1 69 23 to to IN cord-309556-xv3413k1 69 24 SARS SARS NNP cord-309556-xv3413k1 69 25 - - HYPH cord-309556-xv3413k1 69 26 CoV-2 CoV-2 NNP cord-309556-xv3413k1 69 27 , , , cord-309556-xv3413k1 69 28 and and CC cord-309556-xv3413k1 69 29 how how WRB cord-309556-xv3413k1 69 30 these these DT cord-309556-xv3413k1 69 31 dynamics dynamic NNS cord-309556-xv3413k1 69 32 may may MD cord-309556-xv3413k1 69 33 change change VB cord-309556-xv3413k1 69 34 with with IN cord-309556-xv3413k1 69 35 aging age VBG cord-309556-xv3413k1 69 36 . . . cord-309556-xv3413k1 70 1 We -PRON- PRP cord-309556-xv3413k1 70 2 next next RB cord-309556-xv3413k1 70 3 explored explore VBD cord-309556-xv3413k1 70 4 the the DT cord-309556-xv3413k1 70 5 roles role NNS cord-309556-xv3413k1 70 6 of of IN cord-309556-xv3413k1 70 7 lung lung NN cord-309556-xv3413k1 70 8 age age NN cord-309556-xv3413k1 70 9 - - HYPH cord-309556-xv3413k1 70 10 associated associate VBN cord-309556-xv3413k1 70 11 genes gene NNS cord-309556-xv3413k1 70 12 in in IN cord-309556-xv3413k1 70 13 host host NN cord-309556-xv3413k1 70 14 responses response NNS cord-309556-xv3413k1 70 15 to to IN cord-309556-xv3413k1 70 16 viral viral JJ cord-309556-xv3413k1 70 17 infection infection NN cord-309556-xv3413k1 70 18 . . . cord-309556-xv3413k1 71 1 Since since IN cord-309556-xv3413k1 71 2 functional functional JJ cord-309556-xv3413k1 71 3 screening screening NN cord-309556-xv3413k1 71 4 data datum NNS cord-309556-xv3413k1 71 5 with with IN cord-309556-xv3413k1 71 6 SARS SARS NNP cord-309556-xv3413k1 71 7 - - HYPH cord-309556-xv3413k1 71 8 CoV-2 CoV-2 NNP cord-309556-xv3413k1 71 9 has have VBZ cord-309556-xv3413k1 71 10 not not RB cord-309556-xv3413k1 71 11 yet yet RB cord-309556-xv3413k1 71 12 been be VBN cord-309556-xv3413k1 71 13 described describe VBN cord-309556-xv3413k1 71 14 ( ( -LRB- cord-309556-xv3413k1 71 15 as as IN cord-309556-xv3413k1 71 16 of of IN cord-309556-xv3413k1 71 17 March March NNP cord-309556-xv3413k1 71 18 30 30 CD cord-309556-xv3413k1 71 19 , , , cord-309556-xv3413k1 71 20 2020 2020 CD cord-309556-xv3413k1 71 21 ) ) -RRB- cord-309556-xv3413k1 71 22 , , , cord-309556-xv3413k1 71 23 we -PRON- PRP cord-309556-xv3413k1 71 24 instead instead RB cord-309556-xv3413k1 71 25 searched search VBD cord-309556-xv3413k1 71 26 for for IN cord-309556-xv3413k1 71 27 data datum NNS cord-309556-xv3413k1 71 28 on on IN cord-309556-xv3413k1 71 29 SARS SARS NNP cord-309556-xv3413k1 71 30 - - HYPH cord-309556-xv3413k1 71 31 CoV. CoV. NNP cord-309556-xv3413k1 71 32 While while IN cord-309556-xv3413k1 71 33 these these DT cord-309556-xv3413k1 71 34 two two CD cord-309556-xv3413k1 71 35 viruses virus NNS cord-309556-xv3413k1 71 36 belong belong VBP cord-309556-xv3413k1 71 37 to to IN cord-309556-xv3413k1 71 38 the the DT cord-309556-xv3413k1 71 39 same same JJ cord-309556-xv3413k1 71 40 genus genus NN cord-309556-xv3413k1 71 41 ( ( -LRB- cord-309556-xv3413k1 71 42 Betacoronaviridae Betacoronaviridae NNP cord-309556-xv3413k1 71 43 ) ) -RRB- cord-309556-xv3413k1 71 44 and and CC cord-309556-xv3413k1 71 45 are be VBP cord-309556-xv3413k1 71 46 conserved conserve VBN cord-309556-xv3413k1 71 47 to to IN cord-309556-xv3413k1 71 48 some some DT cord-309556-xv3413k1 71 49 extent extent NN cord-309556-xv3413k1 71 50 8 8 CD cord-309556-xv3413k1 71 51 , , , cord-309556-xv3413k1 71 52 they -PRON- PRP cord-309556-xv3413k1 71 53 are be VBP cord-309556-xv3413k1 71 54 nevertheless nevertheless RB cord-309556-xv3413k1 71 55 two two CD cord-309556-xv3413k1 71 56 distinct distinct JJ cord-309556-xv3413k1 71 57 viruses virus NNS cord-309556-xv3413k1 71 58 with with IN cord-309556-xv3413k1 71 59 different different JJ cord-309556-xv3413k1 71 60 epidemiological epidemiological JJ cord-309556-xv3413k1 71 61 features feature NNS cord-309556-xv3413k1 71 62 , , , cord-309556-xv3413k1 71 63 indicating indicate VBG cord-309556-xv3413k1 71 64 unique unique JJ cord-309556-xv3413k1 71 65 virology virology NN cord-309556-xv3413k1 71 66 and and CC cord-309556-xv3413k1 71 67 host host NN cord-309556-xv3413k1 71 68 biology biology NN cord-309556-xv3413k1 71 69 . . . cord-309556-xv3413k1 72 1 Therefore therefore RB cord-309556-xv3413k1 72 2 , , , cord-309556-xv3413k1 72 3 data datum NNS cord-309556-xv3413k1 72 4 from from IN cord-309556-xv3413k1 72 5 experiments experiment NNS cord-309556-xv3413k1 72 6 performed perform VBN cord-309556-xv3413k1 72 7 with with IN cord-309556-xv3413k1 72 8 SARS SARS NNP cord-309556-xv3413k1 72 9 - - HYPH cord-309556-xv3413k1 72 10 CoV CoV NNP cord-309556-xv3413k1 72 11 must must MD cord-309556-xv3413k1 72 12 be be VB cord-309556-xv3413k1 72 13 interpreted interpret VBN cord-309556-xv3413k1 72 14 with with IN cord-309556-xv3413k1 72 15 caution caution NN cord-309556-xv3413k1 72 16 . . . cord-309556-xv3413k1 73 1 We -PRON- PRP cord-309556-xv3413k1 73 2 reassessed reassess VBD cord-309556-xv3413k1 73 3 the the DT cord-309556-xv3413k1 73 4 results result NNS cord-309556-xv3413k1 73 5 from from IN cord-309556-xv3413k1 73 6 a a DT cord-309556-xv3413k1 74 1 prior prior RB cord-309556-xv3413k1 74 2 in in IN cord-309556-xv3413k1 74 3 vitro vitro FW cord-309556-xv3413k1 74 4 siRNA siRNA NNP cord-309556-xv3413k1 74 5 screen screen NN cord-309556-xv3413k1 74 6 of of IN cord-309556-xv3413k1 74 7 host host NN cord-309556-xv3413k1 74 8 factors factor NNS cord-309556-xv3413k1 74 9 involved involve VBN cord-309556-xv3413k1 74 10 in in IN cord-309556-xv3413k1 74 11 SARS SARS NNP cord-309556-xv3413k1 74 12 - - HYPH cord-309556-xv3413k1 74 13 CoV CoV NNP cord-309556-xv3413k1 74 14 infection infection NN cord-309556-xv3413k1 74 15 63 63 CD cord-309556-xv3413k1 74 16 . . . cord-309556-xv3413k1 75 1 In in IN cord-309556-xv3413k1 75 2 this this DT cord-309556-xv3413k1 75 3 kinase kinase NN cord-309556-xv3413k1 75 4 - - HYPH cord-309556-xv3413k1 75 5 focused focus VBN cord-309556-xv3413k1 75 6 screen screen NN cord-309556-xv3413k1 75 7 , , , cord-309556-xv3413k1 75 8 130 130 CD cord-309556-xv3413k1 75 9 factors factor NNS cord-309556-xv3413k1 75 10 were be VBD cord-309556-xv3413k1 75 11 determined determine VBN cord-309556-xv3413k1 75 12 to to TO cord-309556-xv3413k1 75 13 have have VB cord-309556-xv3413k1 75 14 a a DT cord-309556-xv3413k1 75 15 significant significant JJ cord-309556-xv3413k1 75 16 effect effect NN cord-309556-xv3413k1 75 17 on on IN cord-309556-xv3413k1 75 18 SARS SARS NNP cord-309556-xv3413k1 75 19 - - HYPH cord-309556-xv3413k1 75 20 CoV CoV NNP cord-309556-xv3413k1 75 21 replication replication NN cord-309556-xv3413k1 75 22 . . . cord-309556-xv3413k1 76 1 Notably notably RB cord-309556-xv3413k1 76 2 , , , cord-309556-xv3413k1 76 3 11 11 CD cord-309556-xv3413k1 76 4 of of IN cord-309556-xv3413k1 76 5 the the DT cord-309556-xv3413k1 76 6 130 130 CD cord-309556-xv3413k1 76 7 factors factor NNS cord-309556-xv3413k1 76 8 exhibited exhibit VBD cord-309556-xv3413k1 76 9 age age NN cord-309556-xv3413k1 76 10 - - HYPH cord-309556-xv3413k1 76 11 associated associate VBN cord-309556-xv3413k1 76 12 gene gene NN cord-309556-xv3413k1 76 13 expression expression NN cord-309556-xv3413k1 76 14 patterns pattern NNS cord-309556-xv3413k1 76 15 ( ( -LRB- cord-309556-xv3413k1 76 16 Figure figure NN cord-309556-xv3413k1 76 17 4a 4a CD cord-309556-xv3413k1 76 18 ) ) -RRB- cord-309556-xv3413k1 76 19 , , , cord-309556-xv3413k1 76 20 with with IN cord-309556-xv3413k1 76 21 4 4 CD cord-309556-xv3413k1 76 22 genes gene NNS cord-309556-xv3413k1 76 23 in in IN cord-309556-xv3413k1 76 24 Cluster cluster NN cord-309556-xv3413k1 76 25 1 1 CD cord-309556-xv3413k1 76 26 ( ( -LRB- cord-309556-xv3413k1 76 27 increasing increase VBG cord-309556-xv3413k1 76 28 with with IN cord-309556-xv3413k1 76 29 age age NN cord-309556-xv3413k1 76 30 ) ) -RRB- cord-309556-xv3413k1 76 31 and and CC cord-309556-xv3413k1 76 32 7 7 CD cord-309556-xv3413k1 76 33 genes gene NNS cord-309556-xv3413k1 76 34 in in IN cord-309556-xv3413k1 76 35 Cluster cluster NN cord-309556-xv3413k1 76 36 2 2 CD cord-309556-xv3413k1 76 37 ( ( -LRB- cord-309556-xv3413k1 76 38 decreasing decrease VBG cord-309556-xv3413k1 76 39 with with IN cord-309556-xv3413k1 76 40 age age NN cord-309556-xv3413k1 76 41 ) ) -RRB- cord-309556-xv3413k1 76 42 . . . cord-309556-xv3413k1 77 1 The the DT cord-309556-xv3413k1 77 2 4 4 CD cord-309556-xv3413k1 77 3 genes gene NNS cord-309556-xv3413k1 77 4 in in IN cord-309556-xv3413k1 77 5 Cluster cluster NN cord-309556-xv3413k1 77 6 1 1 CD cord-309556-xv3413k1 77 7 were be VBD cord-309556-xv3413k1 77 8 all all DT cord-309556-xv3413k1 77 9 associated associate VBN cord-309556-xv3413k1 77 10 with with IN cord-309556-xv3413k1 77 11 increased increase VBN cord-309556-xv3413k1 77 12 SARS SARS NNP cord-309556-xv3413k1 77 13 infectivity infectivity NN cord-309556-xv3413k1 77 14 upon upon IN cord-309556-xv3413k1 77 15 siRNA siRNA NNP cord-309556-xv3413k1 77 16 knockdown knockdown NNP cord-309556-xv3413k1 77 17 ; ; : cord-309556-xv3413k1 77 18 these these DT cord-309556-xv3413k1 77 19 genes gene NNS cord-309556-xv3413k1 77 20 included include VBD cord-309556-xv3413k1 77 21 CLK1 CLK1 NNP cord-309556-xv3413k1 77 22 , , , cord-309556-xv3413k1 77 23 AKAP6 AKAP6 NNP cord-309556-xv3413k1 77 24 , , , cord-309556-xv3413k1 77 25 ALPK2 ALPK2 NNP cord-309556-xv3413k1 77 26 , , , cord-309556-xv3413k1 77 27 and and CC cord-309556-xv3413k1 77 28 ITK ITK NNP cord-309556-xv3413k1 77 29 . . . cord-309556-xv3413k1 78 1 Paradoxically paradoxically RB cord-309556-xv3413k1 78 2 , , , cord-309556-xv3413k1 78 3 while while IN cord-309556-xv3413k1 78 4 knockdown knockdown NN cord-309556-xv3413k1 78 5 of of IN cord-309556-xv3413k1 78 6 CLK1 CLK1 NNP cord-309556-xv3413k1 78 7 was be VBD cord-309556-xv3413k1 78 8 associated associate VBN cord-309556-xv3413k1 78 9 with with IN cord-309556-xv3413k1 78 10 increased increase VBN cord-309556-xv3413k1 78 11 SARS SARS NNP cord-309556-xv3413k1 78 12 infectivity infectivity NN cord-309556-xv3413k1 78 13 , , , cord-309556-xv3413k1 78 14 cell cell NN cord-309556-xv3413k1 78 15 viability viability NN cord-309556-xv3413k1 78 16 was be VBD cord-309556-xv3413k1 78 17 also also RB cord-309556-xv3413k1 78 18 found find VBN cord-309556-xv3413k1 78 19 to to TO cord-309556-xv3413k1 78 20 be be VB cord-309556-xv3413k1 78 21 increased increase VBN cord-309556-xv3413k1 78 22 ( ( -LRB- cord-309556-xv3413k1 78 23 Figure figure NN cord-309556-xv3413k1 78 24 4b 4b CD cord-309556-xv3413k1 78 25 ) ) -RRB- cord-309556-xv3413k1 78 26 . . . cord-309556-xv3413k1 79 1 Of of IN cord-309556-xv3413k1 79 2 the the DT cord-309556-xv3413k1 79 3 7 7 CD cord-309556-xv3413k1 79 4 genes gene NNS cord-309556-xv3413k1 79 5 in in IN cord-309556-xv3413k1 79 6 Cluster Cluster NNP cord-309556-xv3413k1 79 7 2 2 CD cord-309556-xv3413k1 79 8 , , , cord-309556-xv3413k1 79 9 6 6 CD cord-309556-xv3413k1 79 10 were be VBD cord-309556-xv3413k1 79 11 associated associate VBN cord-309556-xv3413k1 79 12 with with IN cord-309556-xv3413k1 79 13 increased increase VBN cord-309556-xv3413k1 79 14 SARS SARS NNP cord-309556-xv3413k1 79 15 infectivity infectivity NN cord-309556-xv3413k1 79 16 and and CC cord-309556-xv3413k1 79 17 reduced reduced JJ cord-309556-xv3413k1 79 18 cell cell NN cord-309556-xv3413k1 79 19 viability viability NN cord-309556-xv3413k1 79 20 upon upon IN cord-309556-xv3413k1 79 21 siRNA siRNA NNP cord-309556-xv3413k1 79 22 knockdown knockdown NNP cord-309556-xv3413k1 79 23 ( ( -LRB- cord-309556-xv3413k1 79 24 AURKB AURKB NNP cord-309556-xv3413k1 79 25 , , , cord-309556-xv3413k1 79 26 CDKL2 CDKL2 NNP cord-309556-xv3413k1 79 27 , , , cord-309556-xv3413k1 79 28 PDIK1L PDIK1L NNP cord-309556-xv3413k1 79 29 , , , cord-309556-xv3413k1 79 30 CDKN3 CDKN3 NNP cord-309556-xv3413k1 79 31 , , , cord-309556-xv3413k1 79 32 MST1R MST1R NNP cord-309556-xv3413k1 79 33 , , , cord-309556-xv3413k1 79 34 and and CC cord-309556-xv3413k1 79 35 ADK ADK NNP cord-309556-xv3413k1 79 36 ) ) -RRB- cord-309556-xv3413k1 79 37 . . . cord-309556-xv3413k1 80 1 Age age NN cord-309556-xv3413k1 80 2 - - HYPH cord-309556-xv3413k1 80 3 related relate VBN cord-309556-xv3413k1 80 4 downregulation downregulation NN cord-309556-xv3413k1 80 5 of of IN cord-309556-xv3413k1 80 6 these these DT cord-309556-xv3413k1 80 7 6 6 CD cord-309556-xv3413k1 80 8 factors factor NNS cord-309556-xv3413k1 80 9 could could MD cord-309556-xv3413k1 80 10 be be VB cord-309556-xv3413k1 80 11 related relate VBN cord-309556-xv3413k1 80 12 to to IN cord-309556-xv3413k1 80 13 the the DT cord-309556-xv3413k1 80 14 increased increase VBN cord-309556-xv3413k1 80 15 severity severity NN cord-309556-xv3413k1 80 16 of of IN cord-309556-xv3413k1 80 17 illness illness NN cord-309556-xv3413k1 80 18 in in IN cord-309556-xv3413k1 80 19 older old JJR cord-309556-xv3413k1 80 20 patients patient NNS cord-309556-xv3413k1 80 21 . . . cord-309556-xv3413k1 81 1 However however RB cord-309556-xv3413k1 81 2 , , , cord-309556-xv3413k1 81 3 we -PRON- PRP cord-309556-xv3413k1 81 4 emphasize emphasize VBP cord-309556-xv3413k1 81 5 that that IN cord-309556-xv3413k1 81 6 until until IN cord-309556-xv3413k1 81 7 rigorous rigorous JJ cord-309556-xv3413k1 81 8 follow follow NN cord-309556-xv3413k1 81 9 - - HYPH cord-309556-xv3413k1 81 10 up up RP cord-309556-xv3413k1 81 11 experiments experiment NNS cord-309556-xv3413k1 81 12 are be VBP cord-309556-xv3413k1 81 13 performed perform VBN cord-309556-xv3413k1 81 14 with with IN cord-309556-xv3413k1 81 15 SARS SARS NNP cord-309556-xv3413k1 81 16 - - HYPH cord-309556-xv3413k1 81 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 81 18 , , , cord-309556-xv3413k1 81 19 the the DT cord-309556-xv3413k1 81 20 therapeutic therapeutic JJ cord-309556-xv3413k1 81 21 potential potential NN cord-309556-xv3413k1 81 22 of of IN cord-309556-xv3413k1 81 23 targeting target VBG cord-309556-xv3413k1 81 24 these these DT cord-309556-xv3413k1 81 25 factors factor NNS cord-309556-xv3413k1 81 26 in in IN cord-309556-xv3413k1 81 27 patients patient NNS cord-309556-xv3413k1 81 28 with with IN cord-309556-xv3413k1 81 29 COVID-19 COVID-19 NNP cord-309556-xv3413k1 81 30 is be VBZ cord-309556-xv3413k1 81 31 unknown unknown JJ cord-309556-xv3413k1 81 32 . . . cord-309556-xv3413k1 82 1 Using use VBG cord-309556-xv3413k1 82 2 the the DT cord-309556-xv3413k1 82 3 human human JJ cord-309556-xv3413k1 82 4 lung lung NN cord-309556-xv3413k1 82 5 scRNA scRNA NNP cord-309556-xv3413k1 82 6 - - HYPH cord-309556-xv3413k1 82 7 seq seq NN cord-309556-xv3413k1 82 8 data datum NNS cord-309556-xv3413k1 82 9 , , , cord-309556-xv3413k1 82 10 we -PRON- PRP cord-309556-xv3413k1 82 11 then then RB cord-309556-xv3413k1 82 12 determined determine VBD cord-309556-xv3413k1 82 13 which which WDT cord-309556-xv3413k1 82 14 cell cell NN cord-309556-xv3413k1 82 15 types type NNS cord-309556-xv3413k1 82 16 predominantly predominantly RB cord-309556-xv3413k1 82 17 express express VBP cord-309556-xv3413k1 82 18 these these DT cord-309556-xv3413k1 82 19 host host NN cord-309556-xv3413k1 82 20 factors factor NNS cord-309556-xv3413k1 82 21 . . . cord-309556-xv3413k1 83 1 Of of IN cord-309556-xv3413k1 83 2 the the DT cord-309556-xv3413k1 83 3 4 4 CD cord-309556-xv3413k1 83 4 genes gene NNS cord-309556-xv3413k1 83 5 in in IN cord-309556-xv3413k1 83 6 Cluster cluster NN cord-309556-xv3413k1 83 7 1 1 CD cord-309556-xv3413k1 83 8 that that WDT cord-309556-xv3413k1 83 9 had have VBD cord-309556-xv3413k1 83 10 a a DT cord-309556-xv3413k1 83 11 significant significant JJ cord-309556-xv3413k1 83 12 impact impact NN cord-309556-xv3413k1 83 13 on on IN cord-309556-xv3413k1 83 14 SARS SARS NNP cord-309556-xv3413k1 83 15 - - HYPH cord-309556-xv3413k1 83 16 CoV cov NN cord-309556-xv3413k1 83 17 replication replication NN cord-309556-xv3413k1 83 18 , , , cord-309556-xv3413k1 83 19 CLK1 CLK1 NNP cord-309556-xv3413k1 83 20 was be VBD cord-309556-xv3413k1 83 21 universally universally RB cord-309556-xv3413k1 83 22 expressed express VBN cord-309556-xv3413k1 83 23 , , , cord-309556-xv3413k1 83 24 while while IN cord-309556-xv3413k1 83 25 ALPK2 alpk2 JJ cord-309556-xv3413k1 83 26 expression expression NN cord-309556-xv3413k1 83 27 was be VBD cord-309556-xv3413k1 83 28 rarely rarely RB cord-309556-xv3413k1 83 29 detected detect VBN cord-309556-xv3413k1 83 30 ( ( -LRB- cord-309556-xv3413k1 83 31 Figure figure NN cord-309556-xv3413k1 83 32 4c 4c CD cord-309556-xv3413k1 83 33 , , , cord-309556-xv3413k1 83 34 Supplementary Supplementary NNP cord-309556-xv3413k1 83 35 Figure Figure NNP cord-309556-xv3413k1 83 36 5a 5a CD cord-309556-xv3413k1 83 37 ) ) -RRB- cord-309556-xv3413k1 83 38 . . . cord-309556-xv3413k1 84 1 ITK ITK NNP cord-309556-xv3413k1 84 2 was be VBD cord-309556-xv3413k1 84 3 preferentially preferentially RB cord-309556-xv3413k1 84 4 expressed express VBN cord-309556-xv3413k1 84 5 in in IN cord-309556-xv3413k1 84 6 lymphocytic lymphocytic JJ cord-309556-xv3413k1 84 7 populations population NNS cord-309556-xv3413k1 84 8 , , , cord-309556-xv3413k1 84 9 and and CC cord-309556-xv3413k1 84 10 AKAP6 AKAP6 NNP cord-309556-xv3413k1 84 11 was be VBD cord-309556-xv3413k1 84 12 most most RBS cord-309556-xv3413k1 84 13 frequently frequently RB cord-309556-xv3413k1 84 14 expressed express VBN cord-309556-xv3413k1 84 15 in in IN cord-309556-xv3413k1 84 16 ciliated ciliated JJ cord-309556-xv3413k1 84 17 cells cell NNS cord-309556-xv3413k1 84 18 and and CC cord-309556-xv3413k1 84 19 muscle muscle NN cord-309556-xv3413k1 84 20 cells cell NNS cord-309556-xv3413k1 84 21 . . . cord-309556-xv3413k1 85 1 Of of IN cord-309556-xv3413k1 85 2 the the DT cord-309556-xv3413k1 85 3 7 7 CD cord-309556-xv3413k1 85 4 overlapping overlapping JJ cord-309556-xv3413k1 85 5 genes gene NNS cord-309556-xv3413k1 85 6 in in IN cord-309556-xv3413k1 85 7 Cluster Cluster NNP cord-309556-xv3413k1 85 8 2 2 CD cord-309556-xv3413k1 85 9 , , , cord-309556-xv3413k1 85 10 AURKB AURKB NNP cord-309556-xv3413k1 85 11 and and CC cord-309556-xv3413k1 85 12 CDKN3 CDKN3 NNP cord-309556-xv3413k1 85 13 were be VBD cord-309556-xv3413k1 85 14 predominantly predominantly RB cord-309556-xv3413k1 85 15 expressed express VBN cord-309556-xv3413k1 85 16 in in IN cord-309556-xv3413k1 85 17 proliferating proliferate VBG cord-309556-xv3413k1 85 18 immune immune JJ cord-309556-xv3413k1 85 19 cell cell NN cord-309556-xv3413k1 85 20 populations population NNS cord-309556-xv3413k1 85 21 , , , cord-309556-xv3413k1 85 22 such such JJ cord-309556-xv3413k1 85 23 as as IN cord-309556-xv3413k1 85 24 macrophages macrophage NNS cord-309556-xv3413k1 85 25 , , , cord-309556-xv3413k1 85 26 DCs DCs NNP cord-309556-xv3413k1 85 27 / / SYM cord-309556-xv3413k1 85 28 monocytes monocyte NNS cord-309556-xv3413k1 85 29 , , , cord-309556-xv3413k1 85 30 T t NN cord-309556-xv3413k1 85 31 cells cell NNS cord-309556-xv3413k1 85 32 , , , cord-309556-xv3413k1 85 33 and and CC cord-309556-xv3413k1 85 34 NK NK NNP cord-309556-xv3413k1 85 35 cells cell NNS cord-309556-xv3413k1 85 36 ( ( -LRB- cord-309556-xv3413k1 85 37 Figure figure NN cord-309556-xv3413k1 85 38 4d 4d CD cord-309556-xv3413k1 85 39 , , , cord-309556-xv3413k1 85 40 Supplementary Supplementary NNP cord-309556-xv3413k1 85 41 Figure Figure NNP cord-309556-xv3413k1 85 42 5b 5b CD cord-309556-xv3413k1 85 43 ) ) -RRB- cord-309556-xv3413k1 85 44 . . . cord-309556-xv3413k1 86 1 MST1R MST1R NNP cord-309556-xv3413k1 86 2 , , , cord-309556-xv3413k1 86 3 PDIK1L PDIK1L NNP cord-309556-xv3413k1 86 4 , , , cord-309556-xv3413k1 86 5 and and CC cord-309556-xv3413k1 86 6 PSKH1 PSKH1 NNP cord-309556-xv3413k1 86 7 were be VBD cord-309556-xv3413k1 86 8 infrequently infrequently RB cord-309556-xv3413k1 86 9 expressed express VBN cord-309556-xv3413k1 86 10 , , , cord-309556-xv3413k1 86 11 through through IN cord-309556-xv3413k1 86 12 their -PRON- PRP$ cord-309556-xv3413k1 86 13 expression expression NN cord-309556-xv3413k1 86 14 was be VBD cord-309556-xv3413k1 86 15 detected detect VBN cord-309556-xv3413k1 86 16 in in IN cord-309556-xv3413k1 86 17 a a DT cord-309556-xv3413k1 86 18 portion portion NN cord-309556-xv3413k1 86 19 of of IN cord-309556-xv3413k1 86 20 AT2 at2 NN cord-309556-xv3413k1 86 21 cells cell NNS cord-309556-xv3413k1 86 22 ( ( -LRB- cord-309556-xv3413k1 86 23 5.54 5.54 CD cord-309556-xv3413k1 86 24 % % NN cord-309556-xv3413k1 86 25 , , , cord-309556-xv3413k1 86 26 5.30 5.30 CD cord-309556-xv3413k1 86 27 % % NN cord-309556-xv3413k1 86 28 , , , cord-309556-xv3413k1 86 29 and and CC cord-309556-xv3413k1 86 30 5.47 5.47 CD cord-309556-xv3413k1 86 31 % % NN cord-309556-xv3413k1 86 32 , , , cord-309556-xv3413k1 86 33 respectively respectively RB cord-309556-xv3413k1 86 34 ) ) -RRB- cord-309556-xv3413k1 86 35 . . . cord-309556-xv3413k1 87 1 Finally finally RB cord-309556-xv3413k1 87 2 , , , cord-309556-xv3413k1 87 3 ADK ADK NNP cord-309556-xv3413k1 87 4 and and CC cord-309556-xv3413k1 87 5 CDKL2 CDKL2 NNP cord-309556-xv3413k1 87 6 exhibited exhibit VBD cord-309556-xv3413k1 87 7 preferential preferential JJ cord-309556-xv3413k1 87 8 enrichment enrichment NN cord-309556-xv3413k1 87 9 in in IN cord-309556-xv3413k1 87 10 AT2 at2 NN cord-309556-xv3413k1 87 11 cells cell NNS cord-309556-xv3413k1 87 12 ( ( -LRB- cord-309556-xv3413k1 87 13 51.40 51.40 CD cord-309556-xv3413k1 87 14 % % NN cord-309556-xv3413k1 87 15 and and CC cord-309556-xv3413k1 87 16 34.43 34.43 CD cord-309556-xv3413k1 87 17 % % NN cord-309556-xv3413k1 87 18 ) ) -RRB- cord-309556-xv3413k1 87 19 . . . cord-309556-xv3413k1 88 1 In in IN cord-309556-xv3413k1 88 2 aggregate aggregate NN cord-309556-xv3413k1 88 3 , , , cord-309556-xv3413k1 88 4 these these DT cord-309556-xv3413k1 88 5 analyses analysis NNS cord-309556-xv3413k1 88 6 showed show VBD cord-309556-xv3413k1 88 7 that that IN cord-309556-xv3413k1 88 8 the the DT cord-309556-xv3413k1 88 9 age age NN cord-309556-xv3413k1 88 10 - - HYPH cord-309556-xv3413k1 88 11 associated associate VBN cord-309556-xv3413k1 88 12 genes gene NNS cord-309556-xv3413k1 88 13 with with IN cord-309556-xv3413k1 88 14 functional functional JJ cord-309556-xv3413k1 88 15 roles role NNS cord-309556-xv3413k1 88 16 in in IN cord-309556-xv3413k1 88 17 SARS SARS NNP cord-309556-xv3413k1 88 18 - - HYPH cord-309556-xv3413k1 88 19 CoV CoV NNP cord-309556-xv3413k1 88 20 are be VBP cord-309556-xv3413k1 88 21 expressed express VBN cord-309556-xv3413k1 88 22 in in IN cord-309556-xv3413k1 88 23 specific specific JJ cord-309556-xv3413k1 88 24 cell cell NN cord-309556-xv3413k1 88 25 types type NNS cord-309556-xv3413k1 88 26 of of IN cord-309556-xv3413k1 88 27 the the DT cord-309556-xv3413k1 88 28 human human JJ cord-309556-xv3413k1 88 29 lung lung NN cord-309556-xv3413k1 88 30 . . . cord-309556-xv3413k1 89 1 We -PRON- PRP cord-309556-xv3413k1 89 2 then then RB cord-309556-xv3413k1 89 3 investigated investigate VBD cord-309556-xv3413k1 89 4 whether whether IN cord-309556-xv3413k1 89 5 age age NN cord-309556-xv3413k1 89 6 - - HYPH cord-309556-xv3413k1 89 7 associated associate VBN cord-309556-xv3413k1 89 8 genes gene NNS cord-309556-xv3413k1 89 9 in in IN cord-309556-xv3413k1 89 10 the the DT cord-309556-xv3413k1 89 11 human human JJ cord-309556-xv3413k1 89 12 lung lung NN cord-309556-xv3413k1 89 13 interact interact VBP cord-309556-xv3413k1 89 14 with with IN cord-309556-xv3413k1 89 15 proteins protein NNS cord-309556-xv3413k1 89 16 encoded encode VBN cord-309556-xv3413k1 89 17 by by IN cord-309556-xv3413k1 89 18 SARS SARS NNP cord-309556-xv3413k1 89 19 - - HYPH cord-309556-xv3413k1 89 20 CoV-2 CoV-2 NNP cord-309556-xv3413k1 89 21 . . . cord-309556-xv3413k1 90 1 A a DT cord-309556-xv3413k1 90 2 recent recent JJ cord-309556-xv3413k1 90 3 study study NN cord-309556-xv3413k1 90 4 interrogated interrogate VBD cord-309556-xv3413k1 90 5 the the DT cord-309556-xv3413k1 90 6 human human JJ cord-309556-xv3413k1 90 7 host host NN cord-309556-xv3413k1 90 8 factors factor NNS cord-309556-xv3413k1 90 9 that that WDT cord-309556-xv3413k1 90 10 interact interact VBP cord-309556-xv3413k1 90 11 with with IN cord-309556-xv3413k1 90 12 27 27 CD cord-309556-xv3413k1 90 13 different different JJ cord-309556-xv3413k1 90 14 SARS SARS NNP cord-309556-xv3413k1 90 15 - - HYPH cord-309556-xv3413k1 90 16 CoV-2 CoV-2 NNP cord-309556-xv3413k1 90 17 proteins protein VBZ cord-309556-xv3413k1 90 18 64 64 CD cord-309556-xv3413k1 90 19 , , , cord-309556-xv3413k1 90 20 revealing reveal VBG cord-309556-xv3413k1 90 21 the the DT cord-309556-xv3413k1 90 22 SARS SARS NNP cord-309556-xv3413k1 90 23 - - HYPH cord-309556-xv3413k1 90 24 CoV-2 CoV-2 NNP cord-309556-xv3413k1 90 25 : : : cord-309556-xv3413k1 90 26 Human human JJ cord-309556-xv3413k1 90 27 protein protein NN cord-309556-xv3413k1 90 28 interactome interactome NNP cord-309556-xv3413k1 90 29 in in IN cord-309556-xv3413k1 90 30 cell cell NN cord-309556-xv3413k1 90 31 lines line NNS cord-309556-xv3413k1 90 32 expressing express VBG cord-309556-xv3413k1 90 33 recombinant recombinant JJ cord-309556-xv3413k1 90 34 SARS SARS NNP cord-309556-xv3413k1 90 35 - - HYPH cord-309556-xv3413k1 90 36 CoV-2 CoV-2 NNP cord-309556-xv3413k1 90 37 proteins protein NNS cord-309556-xv3413k1 90 38 . . . cord-309556-xv3413k1 91 1 By by IN cord-309556-xv3413k1 91 2 cross cross NN cord-309556-xv3413k1 91 3 - - JJ cord-309556-xv3413k1 91 4 referencing reference VBG cord-309556-xv3413k1 91 5 the the DT cord-309556-xv3413k1 91 6 interacting interact VBG cord-309556-xv3413k1 91 7 host host NN cord-309556-xv3413k1 91 8 factors factor NNS cord-309556-xv3413k1 91 9 with with IN cord-309556-xv3413k1 91 10 the the DT cord-309556-xv3413k1 91 11 set set NN cord-309556-xv3413k1 91 12 of of IN cord-309556-xv3413k1 91 13 age age NN cord-309556-xv3413k1 91 14 - - HYPH cord-309556-xv3413k1 91 15 associated associate VBN cord-309556-xv3413k1 91 16 genes gene NNS cord-309556-xv3413k1 91 17 , , , cord-309556-xv3413k1 91 18 we -PRON- PRP cord-309556-xv3413k1 91 19 identified identify VBD cord-309556-xv3413k1 91 20 20 20 CD cord-309556-xv3413k1 91 21 factors factor NNS cord-309556-xv3413k1 91 22 at at IN cord-309556-xv3413k1 91 23 the the DT cord-309556-xv3413k1 91 24 intersection intersection NN cord-309556-xv3413k1 92 1 ( ( -LRB- cord-309556-xv3413k1 92 2 Figure figure NN cord-309556-xv3413k1 92 3 _SP cord-309556-xv3413k1 92 4 5a 5a CD cord-309556-xv3413k1 92 5 ) ) -RRB- cord-309556-xv3413k1 92 6 . . . cord-309556-xv3413k1 93 1 4 4 CD cord-309556-xv3413k1 93 2 of of IN cord-309556-xv3413k1 93 3 these these DT cord-309556-xv3413k1 93 4 genes gene NNS cord-309556-xv3413k1 93 5 showed show VBD cord-309556-xv3413k1 93 6 an an DT cord-309556-xv3413k1 93 7 increase increase NN cord-309556-xv3413k1 93 8 in in IN cord-309556-xv3413k1 93 9 expression expression NN cord-309556-xv3413k1 93 10 with with IN cord-309556-xv3413k1 93 11 age age NN cord-309556-xv3413k1 93 12 ( ( -LRB- cord-309556-xv3413k1 93 13 i.e. i.e. FW cord-309556-xv3413k1 93 14 Cluster cluster NN cord-309556-xv3413k1 93 15 1 1 CD cord-309556-xv3413k1 93 16 genes gene NNS cord-309556-xv3413k1 93 17 ) ) -RRB- cord-309556-xv3413k1 93 18 , , , cord-309556-xv3413k1 93 19 while while IN cord-309556-xv3413k1 93 20 16 16 CD cord-309556-xv3413k1 93 21 decreased decrease VBD cord-309556-xv3413k1 93 22 in in IN cord-309556-xv3413k1 93 23 expression expression NN cord-309556-xv3413k1 93 24 with with IN cord-309556-xv3413k1 93 25 age age NN cord-309556-xv3413k1 93 26 ( ( -LRB- cord-309556-xv3413k1 93 27 Cluster cluster NN cord-309556-xv3413k1 93 28 2 2 CD cord-309556-xv3413k1 93 29 genes gene NNS cord-309556-xv3413k1 93 30 ) ) -RRB- cord-309556-xv3413k1 93 31 . . . cord-309556-xv3413k1 94 1 Mapping map VBG cord-309556-xv3413k1 94 2 these these DT cord-309556-xv3413k1 94 3 factors factor NNS cord-309556-xv3413k1 94 4 to to IN cord-309556-xv3413k1 94 5 their -PRON- PRP$ cord-309556-xv3413k1 94 6 interacting interact VBG cord-309556-xv3413k1 94 7 SARS SARS NNP cord-309556-xv3413k1 94 8 - - HYPH cord-309556-xv3413k1 94 9 CoV-2 CoV-2 NNP cord-309556-xv3413k1 94 10 proteins protein NNS cord-309556-xv3413k1 94 11 , , , cord-309556-xv3413k1 94 12 we -PRON- PRP cord-309556-xv3413k1 94 13 noted note VBD cord-309556-xv3413k1 94 14 that that IN cord-309556-xv3413k1 94 15 the the DT cord-309556-xv3413k1 94 16 age age NN cord-309556-xv3413k1 94 17 - - HYPH cord-309556-xv3413k1 94 18 associated associate VBN cord-309556-xv3413k1 94 19 host host NN cord-309556-xv3413k1 94 20 factors factor NNS cord-309556-xv3413k1 94 21 which which WDT cord-309556-xv3413k1 94 22 interact interact VBP cord-309556-xv3413k1 94 23 with with IN cord-309556-xv3413k1 94 24 M M NNP cord-309556-xv3413k1 94 25 , , , cord-309556-xv3413k1 94 26 Nsp13 Nsp13 NNP cord-309556-xv3413k1 94 27 , , , cord-309556-xv3413k1 94 28 Nsp1 Nsp1 NNP cord-309556-xv3413k1 94 29 , , , cord-309556-xv3413k1 94 30 Nsp7 Nsp7 NNP cord-309556-xv3413k1 94 31 , , , cord-309556-xv3413k1 94 32 Nsp8 Nsp8 NNP cord-309556-xv3413k1 94 33 , , , cord-309556-xv3413k1 94 34 Orf3a orf3a XX cord-309556-xv3413k1 94 35 , , , cord-309556-xv3413k1 94 36 Orf8 Orf8 NNP cord-309556-xv3413k1 94 37 , , , cord-309556-xv3413k1 94 38 Orf9c Orf9c NNP cord-309556-xv3413k1 94 39 , , , cord-309556-xv3413k1 94 40 and and CC cord-309556-xv3413k1 94 41 Orf10 Orf10 NNP cord-309556-xv3413k1 94 42 proteins protein NNS cord-309556-xv3413k1 94 43 generally generally RB cord-309556-xv3413k1 94 44 decrease decrease VBP cord-309556-xv3413k1 94 45 in in IN cord-309556-xv3413k1 94 46 expression expression NN cord-309556-xv3413k1 94 47 with with IN cord-309556-xv3413k1 94 48 aging age VBG cord-309556-xv3413k1 94 49 ( ( -LRB- cord-309556-xv3413k1 94 50 Figure figure NN cord-309556-xv3413k1 94 51 5b 5b CD cord-309556-xv3413k1 94 52 ) ) -RRB- cord-309556-xv3413k1 94 53 . . . cord-309556-xv3413k1 95 1 However however RB cord-309556-xv3413k1 95 2 , , , cord-309556-xv3413k1 95 3 a a DT cord-309556-xv3413k1 95 4 notable notable JJ cord-309556-xv3413k1 95 5 exception exception NN cord-309556-xv3413k1 95 6 was be VBD cord-309556-xv3413k1 95 7 Nsp12 Nsp12 NNP cord-309556-xv3413k1 95 8 , , , cord-309556-xv3413k1 95 9 as as IN cord-309556-xv3413k1 95 10 the the DT cord-309556-xv3413k1 95 11 age age NN cord-309556-xv3413k1 95 12 - - HYPH cord-309556-xv3413k1 95 13 associated associate VBN cord-309556-xv3413k1 95 14 hostfactors hostfactor NNS cord-309556-xv3413k1 95 15 that that WDT cord-309556-xv3413k1 95 16 interact interact VBP cord-309556-xv3413k1 95 17 with with IN cord-309556-xv3413k1 95 18 Nsp12 Nsp12 NNP cord-309556-xv3413k1 95 19 both both DT cord-309556-xv3413k1 95 20 showed show VBD cord-309556-xv3413k1 95 21 increased increased JJ cord-309556-xv3413k1 95 22 expression expression NN cord-309556-xv3413k1 95 23 with with IN cord-309556-xv3413k1 95 24 aging age VBG cord-309556-xv3413k1 95 25 ( ( -LRB- cord-309556-xv3413k1 95 26 CRTC3 crtc3 NN cord-309556-xv3413k1 96 1 and and CC cord-309556-xv3413k1 96 2 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 96 3 ) ) -RRB- cord-309556-xv3413k1 97 1 ( ( -LRB- cord-309556-xv3413k1 97 2 Figure figure NN cord-309556-xv3413k1 97 3 5c 5c CD cord-309556-xv3413k1 97 4 ) ) -RRB- cord-309556-xv3413k1 97 5 . . . cord-309556-xv3413k1 98 1 Nsp12 Nsp12 NNP cord-309556-xv3413k1 98 2 encodes encode VBZ cord-309556-xv3413k1 98 3 for for IN cord-309556-xv3413k1 98 4 the the DT cord-309556-xv3413k1 98 5 primary primary JJ cord-309556-xv3413k1 98 6 RNA RNA NNP cord-309556-xv3413k1 98 7 - - HYPH cord-309556-xv3413k1 98 8 dependent dependent JJ cord-309556-xv3413k1 98 9 RNA RNA NNP cord-309556-xv3413k1 98 10 polymerase polymerase NN cord-309556-xv3413k1 98 11 ( ( -LRB- cord-309556-xv3413k1 98 12 RdRp RdRp NNP cord-309556-xv3413k1 98 13 ) ) -RRB- cord-309556-xv3413k1 98 14 of of IN cord-309556-xv3413k1 98 15 SARS SARS NNP cord-309556-xv3413k1 98 16 - - HYPH cord-309556-xv3413k1 98 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 98 18 , , , cord-309556-xv3413k1 98 19 and and CC cord-309556-xv3413k1 98 20 is be VBZ cord-309556-xv3413k1 98 21 a a DT cord-309556-xv3413k1 98 22 prime prime JJ cord-309556-xv3413k1 98 23 target target NN cord-309556-xv3413k1 98 24 for for IN cord-309556-xv3413k1 98 25 developing develop VBG cord-309556-xv3413k1 98 26 therapies therapy NNS cord-309556-xv3413k1 98 27 against against IN cord-309556-xv3413k1 98 28 COVID-19 COVID-19 NNP cord-309556-xv3413k1 98 29 . . . cord-309556-xv3413k1 99 1 The the DT cord-309556-xv3413k1 99 2 observation observation NN cord-309556-xv3413k1 99 3 that that WDT cord-309556-xv3413k1 99 4 CRTC3 crtc3 NN cord-309556-xv3413k1 99 5 and and CC cord-309556-xv3413k1 99 6 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 99 7 increase increase VB cord-309556-xv3413k1 99 8 in in IN cord-309556-xv3413k1 99 9 expression expression NN cord-309556-xv3413k1 99 10 with with IN cord-309556-xv3413k1 99 11 aging age VBG cord-309556-xv3413k1 99 12 is be VBZ cord-309556-xv3413k1 99 13 intriguing intriguing JJ cord-309556-xv3413k1 99 14 , , , cord-309556-xv3413k1 99 15 as as IN cord-309556-xv3413k1 99 16 these these DT cord-309556-xv3413k1 99 17 genes gene NNS cord-309556-xv3413k1 99 18 may may MD cord-309556-xv3413k1 99 19 be be VB cord-309556-xv3413k1 99 20 related relate VBN cord-309556-xv3413k1 99 21 to to IN cord-309556-xv3413k1 99 22 the the DT cord-309556-xv3413k1 99 23 activity activity NN cord-309556-xv3413k1 99 24 of of IN cord-309556-xv3413k1 99 25 Nsp12 Nsp12 NNP cord-309556-xv3413k1 99 26 / / SYM cord-309556-xv3413k1 99 27 RdRp RdRp NNP cord-309556-xv3413k1 99 28 in in IN cord-309556-xv3413k1 99 29 host host NN cord-309556-xv3413k1 99 30 cells cell NNS cord-309556-xv3413k1 99 31 . . . cord-309556-xv3413k1 100 1 Of of IN cord-309556-xv3413k1 100 2 note note NN cord-309556-xv3413k1 100 3 , , , cord-309556-xv3413k1 100 4 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 100 5 is be VBZ cord-309556-xv3413k1 100 6 a a DT cord-309556-xv3413k1 100 7 known know VBN cord-309556-xv3413k1 100 8 repressor repressor NN cord-309556-xv3413k1 100 9 of of IN cord-309556-xv3413k1 100 10 cAMP camp NN cord-309556-xv3413k1 100 11 signaling signal VBG cord-309556-xv3413k1 100 12 65 65 CD cord-309556-xv3413k1 100 13 , , , cord-309556-xv3413k1 100 14 66 66 CD cord-309556-xv3413k1 100 15 , , , cord-309556-xv3413k1 100 16 and and CC cord-309556-xv3413k1 100 17 cAMP camp NN cord-309556-xv3413k1 100 18 signaling signal VBG cord-309556-xv3413k1 100 19 potently potently RB cord-309556-xv3413k1 100 20 inhibits inhibit VBZ cord-309556-xv3413k1 100 21 contraction contraction NN cord-309556-xv3413k1 100 22 of of IN cord-309556-xv3413k1 100 23 airway airway JJ cord-309556-xv3413k1 100 24 smooth smooth JJ cord-309556-xv3413k1 100 25 muscle muscle NN cord-309556-xv3413k1 100 26 cells cell NNS cord-309556-xv3413k1 100 27 67 67 CD cord-309556-xv3413k1 100 28 . . . cord-309556-xv3413k1 101 1 Thus thus RB cord-309556-xv3413k1 101 2 , , , cord-309556-xv3413k1 101 3 age age NN cord-309556-xv3413k1 101 4 - - HYPH cord-309556-xv3413k1 101 5 associated associate VBN cord-309556-xv3413k1 101 6 increases increase NNS cord-309556-xv3413k1 101 7 in in IN cord-309556-xv3413k1 101 8 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 101 9 could could MD cord-309556-xv3413k1 101 10 promote promote VB cord-309556-xv3413k1 101 11 smooth smooth JJ cord-309556-xv3413k1 101 12 muscle muscle NN cord-309556-xv3413k1 101 13 contraction contraction NN cord-309556-xv3413k1 101 14 , , , cord-309556-xv3413k1 101 15 which which WDT cord-309556-xv3413k1 101 16 is be VBZ cord-309556-xv3413k1 101 17 concordant concordant JJ cord-309556-xv3413k1 101 18 with with IN cord-309556-xv3413k1 101 19 our -PRON- PRP$ cord-309556-xv3413k1 101 20 analyses analysis NNS cord-309556-xv3413k1 101 21 on on IN cord-309556-xv3413k1 101 22 age age NN cord-309556-xv3413k1 101 23 - - HYPH cord-309556-xv3413k1 101 24 associated associate VBN cord-309556-xv3413k1 101 25 gene gene NN cord-309556-xv3413k1 101 26 signatures signature NNS cord-309556-xv3413k1 101 27 in in IN cord-309556-xv3413k1 101 28 the the DT cord-309556-xv3413k1 101 29 lung lung NN cord-309556-xv3413k1 101 30 ( ( -LRB- cord-309556-xv3413k1 101 31 Figure figure NN cord-309556-xv3413k1 101 32 1e 1e CD cord-309556-xv3413k1 101 33 ) ) -RRB- cord-309556-xv3413k1 101 34 . . . cord-309556-xv3413k1 102 1 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 102 2 might may MD cord-309556-xv3413k1 102 3 possibly possibly RB cord-309556-xv3413k1 102 4 contribute contribute VB cord-309556-xv3413k1 102 5 to to IN cord-309556-xv3413k1 102 6 COVID-19 covid-19 JJ cord-309556-xv3413k1 102 7 pathology pathology NN cord-309556-xv3413k1 102 8 by by IN cord-309556-xv3413k1 102 9 not not RB cord-309556-xv3413k1 102 10 only only RB cord-309556-xv3413k1 102 11 interacting interact VBG cord-309556-xv3413k1 102 12 with with IN cord-309556-xv3413k1 102 13 SARS SARS NNP cord-309556-xv3413k1 102 14 - - HYPH cord-309556-xv3413k1 102 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 102 16 RdRp RdRp NNP cord-309556-xv3413k1 102 17 , , , cord-309556-xv3413k1 102 18 but but CC cord-309556-xv3413k1 102 19 also also RB cord-309556-xv3413k1 102 20 through through IN cord-309556-xv3413k1 102 21 its -PRON- PRP$ cord-309556-xv3413k1 102 22 normal normal JJ cord-309556-xv3413k1 102 23 physiologic physiologic JJ cord-309556-xv3413k1 102 24 role role NN cord-309556-xv3413k1 102 25 in in IN cord-309556-xv3413k1 102 26 promoting promote VBG cord-309556-xv3413k1 102 27 smooth smooth JJ cord-309556-xv3413k1 102 28 muscle muscle NN cord-309556-xv3413k1 102 29 contraction contraction NN cord-309556-xv3413k1 102 30 . . . cord-309556-xv3413k1 103 1 To to TO cord-309556-xv3413k1 103 2 assess assess VB cord-309556-xv3413k1 103 3 the the DT cord-309556-xv3413k1 103 4 cell cell NN cord-309556-xv3413k1 103 5 type type NN cord-309556-xv3413k1 103 6 - - HYPH cord-309556-xv3413k1 103 7 specific specific JJ cord-309556-xv3413k1 103 8 expression expression NN cord-309556-xv3413k1 103 9 patterns pattern NNS cord-309556-xv3413k1 103 10 of of IN cord-309556-xv3413k1 103 11 these these DT cord-309556-xv3413k1 103 12 various various JJ cord-309556-xv3413k1 103 13 factors factor NNS cord-309556-xv3413k1 103 14 , , , cord-309556-xv3413k1 103 15 we -PRON- PRP cord-309556-xv3413k1 103 16 further further RB cord-309556-xv3413k1 103 17 analyzed analyze VBD cord-309556-xv3413k1 103 18 the the DT cord-309556-xv3413k1 103 19 lung lung NN cord-309556-xv3413k1 103 20 scRNA scrna SYM cord-309556-xv3413k1 103 21 - - HYPH cord-309556-xv3413k1 103 22 seq seq NN cord-309556-xv3413k1 103 23 data datum NNS cord-309556-xv3413k1 103 24 . . . cord-309556-xv3413k1 104 1 Of of IN cord-309556-xv3413k1 104 2 the the DT cord-309556-xv3413k1 104 3 SARS SARS NNP cord-309556-xv3413k1 104 4 - - HYPH cord-309556-xv3413k1 104 5 CoV-2 CoV-2 NNP cord-309556-xv3413k1 104 6 interacting interact VBG cord-309556-xv3413k1 104 7 genes gene NNS cord-309556-xv3413k1 104 8 that that WDT cord-309556-xv3413k1 104 9 increase increase VBP cord-309556-xv3413k1 104 10 in in IN cord-309556-xv3413k1 104 11 expression expression NN cord-309556-xv3413k1 104 12 with with IN cord-309556-xv3413k1 104 13 age age NN cord-309556-xv3413k1 104 14 , , , cord-309556-xv3413k1 104 15 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 104 16 was be VBD cord-309556-xv3413k1 104 17 frequently frequently RB cord-309556-xv3413k1 104 18 expressed express VBN cord-309556-xv3413k1 104 19 across across IN cord-309556-xv3413k1 104 20 several several JJ cord-309556-xv3413k1 104 21 populations population NNS cord-309556-xv3413k1 104 22 , , , cord-309556-xv3413k1 104 23 particularly particularly RB cord-309556-xv3413k1 104 24 proliferating proliferate VBG cord-309556-xv3413k1 104 25 immune immune JJ cord-309556-xv3413k1 104 26 populations population NNS cord-309556-xv3413k1 104 27 ( ( -LRB- cord-309556-xv3413k1 104 28 DC DC NNP cord-309556-xv3413k1 104 29 / / SYM cord-309556-xv3413k1 104 30 monocyte monocyte NNP cord-309556-xv3413k1 104 31 , , , cord-309556-xv3413k1 104 32 T t NN cord-309556-xv3413k1 104 33 cells cell NNS cord-309556-xv3413k1 104 34 , , , cord-309556-xv3413k1 104 35 macrophages macrophage NNS cord-309556-xv3413k1 104 36 ) ) -RRB- cord-309556-xv3413k1 104 37 , , , cord-309556-xv3413k1 104 38 muscle muscle NN cord-309556-xv3413k1 104 39 cells cell NNS cord-309556-xv3413k1 104 40 , , , cord-309556-xv3413k1 104 41 fibroblasts fibroblast NNS cord-309556-xv3413k1 104 42 , , , cord-309556-xv3413k1 104 43 and and CC cord-309556-xv3413k1 104 44 lymph lymph NN cord-309556-xv3413k1 104 45 vessels vessel NNS cord-309556-xv3413k1 104 46 ( ( -LRB- cord-309556-xv3413k1 104 47 Figure figure NN cord-309556-xv3413k1 104 48 5d 5d CD cord-309556-xv3413k1 104 49 ) ) -RRB- cord-309556-xv3413k1 104 50 . . . cord-309556-xv3413k1 105 1 MYCBP2 MYCBP2 NNP cord-309556-xv3413k1 105 2 was be VBD cord-309556-xv3413k1 105 3 also also RB cord-309556-xv3413k1 105 4 expressed express VBN cord-309556-xv3413k1 105 5 in in IN cord-309556-xv3413k1 105 6 21.86 21.86 CD cord-309556-xv3413k1 105 7 % % NN cord-309556-xv3413k1 105 8 of of IN cord-309556-xv3413k1 105 9 AT2 at2 NN cord-309556-xv3413k1 105 10 cells cell NNS cord-309556-xv3413k1 105 11 . . . cord-309556-xv3413k1 106 1 CEP68 CEP68 NNP cord-309556-xv3413k1 106 2 was be VBD cord-309556-xv3413k1 106 3 preferentially preferentially RB cord-309556-xv3413k1 106 4 expressed express VBN cord-309556-xv3413k1 106 5 in in IN cord-309556-xv3413k1 106 6 lymph lymph NN cord-309556-xv3413k1 106 7 vessels vessel NNS cord-309556-xv3413k1 106 8 , , , cord-309556-xv3413k1 106 9 while while IN cord-309556-xv3413k1 106 10 AKAP8L AKAP8L NNP cord-309556-xv3413k1 106 11 and and CC cord-309556-xv3413k1 106 12 CRTC3 CRTC3 NNP cord-309556-xv3413k1 106 13 showed show VBD cord-309556-xv3413k1 106 14 relatively relatively RB cord-309556-xv3413k1 106 15 uniform uniform JJ cord-309556-xv3413k1 106 16 expression expression NN cord-309556-xv3413k1 106 17 frequencies frequency NNS cord-309556-xv3413k1 106 18 across across IN cord-309556-xv3413k1 106 19 cell cell NN cord-309556-xv3413k1 106 20 types type NNS cord-309556-xv3413k1 106 21 , , , cord-309556-xv3413k1 106 22 including include VBG cord-309556-xv3413k1 106 23 a a DT cord-309556-xv3413k1 106 24 fraction fraction NN cord-309556-xv3413k1 106 25 of of IN cord-309556-xv3413k1 106 26 AT2 at2 NN cord-309556-xv3413k1 106 27 cells cell NNS cord-309556-xv3413k1 106 28 ( ( -LRB- cord-309556-xv3413k1 106 29 8.53 8.53 CD cord-309556-xv3413k1 106 30 % % NN cord-309556-xv3413k1 106 31 and and CC cord-309556-xv3413k1 106 32 9.07 9.07 CD cord-309556-xv3413k1 106 33 % % NN cord-309556-xv3413k1 106 34 expressing express VBG cord-309556-xv3413k1 106 35 cells cell NNS cord-309556-xv3413k1 106 36 , , , cord-309556-xv3413k1 106 37 respectively respectively RB cord-309556-xv3413k1 106 38 ) ) -RRB- cord-309556-xv3413k1 106 39 . . . cord-309556-xv3413k1 107 1 Of of IN cord-309556-xv3413k1 107 2 the the DT cord-309556-xv3413k1 107 3 SARS SARS NNP cord-309556-xv3413k1 107 4 - - HYPH cord-309556-xv3413k1 107 5 CoV-2 CoV-2 NNP cord-309556-xv3413k1 107 6 interacting interact VBG cord-309556-xv3413k1 107 7 genes gene NNS cord-309556-xv3413k1 107 8 that that WDT cord-309556-xv3413k1 107 9 decrease decrease VBP cord-309556-xv3413k1 107 10 in in IN cord-309556-xv3413k1 107 11 expression expression NN cord-309556-xv3413k1 107 12 age age NN cord-309556-xv3413k1 107 13 , , , cord-309556-xv3413k1 107 14 NPC2 NPC2 NNP cord-309556-xv3413k1 107 15 and and CC cord-309556-xv3413k1 107 16 NDUFB9 ndufb9 JJ cord-309556-xv3413k1 107 17 were be VBD cord-309556-xv3413k1 107 18 broadly broadly RB cord-309556-xv3413k1 107 19 expressed express VBN cord-309556-xv3413k1 107 20 in in IN cord-309556-xv3413k1 107 21 many many JJ cord-309556-xv3413k1 107 22 cell cell NN cord-309556-xv3413k1 107 23 types type NNS cord-309556-xv3413k1 107 24 , , , cord-309556-xv3413k1 107 25 including include VBG cord-309556-xv3413k1 107 26 AT2 at2 NN cord-309556-xv3413k1 107 27 cells cell NNS cord-309556-xv3413k1 107 28 ( ( -LRB- cord-309556-xv3413k1 107 29 99.96 99.96 CD cord-309556-xv3413k1 107 30 % % NN cord-309556-xv3413k1 107 31 Together together RB cord-309556-xv3413k1 107 32 , , , cord-309556-xv3413k1 107 33 these these DT cord-309556-xv3413k1 107 34 analyses analysis NNS cord-309556-xv3413k1 107 35 highlight highlight VBP cord-309556-xv3413k1 107 36 specific specific JJ cord-309556-xv3413k1 107 37 age age NN cord-309556-xv3413k1 107 38 - - HYPH cord-309556-xv3413k1 107 39 associated associate VBN cord-309556-xv3413k1 107 40 factors factor NNS cord-309556-xv3413k1 107 41 that that WDT cord-309556-xv3413k1 107 42 interact interact VBP cord-309556-xv3413k1 107 43 with with IN cord-309556-xv3413k1 107 44 the the DT cord-309556-xv3413k1 107 45 SARS SARS NNP cord-309556-xv3413k1 107 46 - - HYPH cord-309556-xv3413k1 107 47 CoV-2 CoV-2 NNP cord-309556-xv3413k1 107 48 proteome proteome NN cord-309556-xv3413k1 107 49 , , , cord-309556-xv3413k1 107 50 in in IN cord-309556-xv3413k1 107 51 the the DT cord-309556-xv3413k1 107 52 context context NN cord-309556-xv3413k1 107 53 of of IN cord-309556-xv3413k1 107 54 the the DT cord-309556-xv3413k1 107 55 lung lung NN cord-309556-xv3413k1 107 56 cell cell NN cord-309556-xv3413k1 107 57 types type NNS cord-309556-xv3413k1 107 58 in in IN cord-309556-xv3413k1 107 59 which which WDT cord-309556-xv3413k1 107 60 these these DT cord-309556-xv3413k1 107 61 factors factor NNS cord-309556-xv3413k1 107 62 are be VBP cord-309556-xv3413k1 107 63 normally normally RB cord-309556-xv3413k1 107 64 expressed express VBN cord-309556-xv3413k1 107 65 . . . cord-309556-xv3413k1 108 1 Finally finally RB cord-309556-xv3413k1 108 2 , , , cord-309556-xv3413k1 108 3 we -PRON- PRP cord-309556-xv3413k1 108 4 assessed assess VBD cord-309556-xv3413k1 108 5 whether whether IN cord-309556-xv3413k1 108 6 SARS SARS NNP cord-309556-xv3413k1 108 7 - - HYPH cord-309556-xv3413k1 108 8 CoV-2 CoV-2 NNP cord-309556-xv3413k1 108 9 infection infection NN cord-309556-xv3413k1 108 10 directly directly RB cord-309556-xv3413k1 108 11 alters alter VBZ cord-309556-xv3413k1 108 12 the the DT cord-309556-xv3413k1 108 13 expression expression NN cord-309556-xv3413k1 108 14 of of IN cord-309556-xv3413k1 108 15 lung lung NN cord-309556-xv3413k1 108 16 ageassociated ageassociate VBN cord-309556-xv3413k1 108 17 genes gene NNS cord-309556-xv3413k1 108 18 . . . cord-309556-xv3413k1 109 1 A a DT cord-309556-xv3413k1 109 2 recent recent JJ cord-309556-xv3413k1 109 3 study study NN cord-309556-xv3413k1 109 4 profiled profile VBD cord-309556-xv3413k1 109 5 the the DT cord-309556-xv3413k1 109 6 in in FW cord-309556-xv3413k1 109 7 vitro vitro FW cord-309556-xv3413k1 109 8 transcriptional transcriptional JJ cord-309556-xv3413k1 109 9 changes change NNS cord-309556-xv3413k1 109 10 associated associate VBN cord-309556-xv3413k1 109 11 with with IN cord-309556-xv3413k1 109 12 SARS SARS NNP cord-309556-xv3413k1 109 13 - - HYPH cord-309556-xv3413k1 109 14 CoV-2 CoV-2 NNP cord-309556-xv3413k1 109 15 infection infection NN cord-309556-xv3413k1 109 16 in in IN cord-309556-xv3413k1 109 17 different different JJ cord-309556-xv3413k1 109 18 human human JJ cord-309556-xv3413k1 109 19 lung lung NN cord-309556-xv3413k1 109 20 cell cell NN cord-309556-xv3413k1 109 21 lines line NNS cord-309556-xv3413k1 109 22 68 68 CD cord-309556-xv3413k1 109 23 . . . cord-309556-xv3413k1 110 1 We -PRON- PRP cord-309556-xv3413k1 110 2 specifically specifically RB cord-309556-xv3413k1 110 3 focused focus VBD cord-309556-xv3413k1 110 4 on on IN cord-309556-xv3413k1 110 5 the the DT cord-309556-xv3413k1 110 6 data datum NNS cord-309556-xv3413k1 110 7 from from IN cord-309556-xv3413k1 110 8 A549 a549 JJ cord-309556-xv3413k1 110 9 lung lung NN cord-309556-xv3413k1 110 10 cancer cancer NN cord-309556-xv3413k1 110 11 cells cell NNS cord-309556-xv3413k1 110 12 , , , cord-309556-xv3413k1 110 13 A549 a549 JJ cord-309556-xv3413k1 110 14 cells cell NNS cord-309556-xv3413k1 110 15 transduced transduce VBN cord-309556-xv3413k1 110 16 with with IN cord-309556-xv3413k1 110 17 an an DT cord-309556-xv3413k1 110 18 ACE2 ACE2 NNP cord-309556-xv3413k1 110 19 expression expression NN cord-309556-xv3413k1 110 20 vector vector NN cord-309556-xv3413k1 110 21 ( ( -LRB- cord-309556-xv3413k1 110 22 A549-ACE2 A549-ACE2 NNP cord-309556-xv3413k1 110 23 ) ) -RRB- cord-309556-xv3413k1 110 24 , , , cord-309556-xv3413k1 110 25 and and CC cord-309556-xv3413k1 110 26 Calu-3 Calu-3 NNP cord-309556-xv3413k1 110 27 lung lung NN cord-309556-xv3413k1 110 28 cancer cancer NN cord-309556-xv3413k1 110 29 cells cell NNS cord-309556-xv3413k1 110 30 . . . cord-309556-xv3413k1 111 1 Several several JJ cord-309556-xv3413k1 111 2 age age NN cord-309556-xv3413k1 111 3 - - HYPH cord-309556-xv3413k1 111 4 associated associate VBN cord-309556-xv3413k1 111 5 genes gene NNS cord-309556-xv3413k1 111 6 were be VBD cord-309556-xv3413k1 111 7 found find VBN cord-309556-xv3413k1 111 8 to to TO cord-309556-xv3413k1 111 9 be be VB cord-309556-xv3413k1 111 10 differentially differentially RB cord-309556-xv3413k1 111 11 expressed express VBN cord-309556-xv3413k1 111 12 upon upon IN cord-309556-xv3413k1 111 13 SARS SARS NNP cord-309556-xv3413k1 111 14 - - HYPH cord-309556-xv3413k1 111 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 111 16 infection infection NN cord-309556-xv3413k1 111 17 ( ( -LRB- cord-309556-xv3413k1 111 18 Figure figure NN cord-309556-xv3413k1 111 19 6a 6a CD cord-309556-xv3413k1 111 20 - - HYPH cord-309556-xv3413k1 111 21 c c NN cord-309556-xv3413k1 111 22 ) ) -RRB- cord-309556-xv3413k1 111 23 . . . cord-309556-xv3413k1 112 1 Of of IN cord-309556-xv3413k1 112 2 note note NN cord-309556-xv3413k1 112 3 , , , cord-309556-xv3413k1 112 4 the the DT cord-309556-xv3413k1 112 5 overlap overlap NN cord-309556-xv3413k1 112 6 between between IN cord-309556-xv3413k1 112 7 lung lung NN cord-309556-xv3413k1 112 8 ageassociated ageassociate VBN cord-309556-xv3413k1 112 9 genes gene NNS cord-309556-xv3413k1 112 10 and and CC cord-309556-xv3413k1 112 11 SARS SARS NNP cord-309556-xv3413k1 112 12 - - HYPH cord-309556-xv3413k1 112 13 CoV-2 CoV-2 NNP cord-309556-xv3413k1 112 14 regulated regulate VBN cord-309556-xv3413k1 112 15 genes gene NNS cord-309556-xv3413k1 112 16 was be VBD cord-309556-xv3413k1 112 17 statistically statistically RB cord-309556-xv3413k1 112 18 significant significant JJ cord-309556-xv3413k1 112 19 across across IN cord-309556-xv3413k1 112 20 all all DT cord-309556-xv3413k1 112 21 3 3 CD cord-309556-xv3413k1 112 22 cell cell NN cord-309556-xv3413k1 112 23 lines line NNS cord-309556-xv3413k1 112 24 ( ( -LRB- cord-309556-xv3413k1 112 25 Figure Figure NNP cord-309556-xv3413k1 112 26 6d 6d NNP cord-309556-xv3413k1 112 27 - - HYPH cord-309556-xv3413k1 112 28 f f NNP cord-309556-xv3413k1 112 29 ) ) -RRB- cord-309556-xv3413k1 112 30 , , , cord-309556-xv3413k1 112 31 suggesting suggest VBG cord-309556-xv3413k1 112 32 a a DT cord-309556-xv3413k1 112 33 degree degree NN cord-309556-xv3413k1 112 34 of of IN cord-309556-xv3413k1 112 35 similarity similarity NN cord-309556-xv3413k1 112 36 between between IN cord-309556-xv3413k1 112 37 the the DT cord-309556-xv3413k1 112 38 transcriptional transcriptional JJ cord-309556-xv3413k1 112 39 changes change NNS cord-309556-xv3413k1 112 40 associated associate VBN cord-309556-xv3413k1 112 41 with with IN cord-309556-xv3413k1 112 42 aging age VBG cord-309556-xv3413k1 112 43 and and CC cord-309556-xv3413k1 112 44 with with IN cord-309556-xv3413k1 112 45 SARS SARS NNP cord-309556-xv3413k1 112 46 - - HYPH cord-309556-xv3413k1 112 47 CoV-2 CoV-2 NNP cord-309556-xv3413k1 112 48 infection infection NN cord-309556-xv3413k1 112 49 . . . cord-309556-xv3413k1 113 1 Among among IN cord-309556-xv3413k1 113 2 the the DT cord-309556-xv3413k1 113 3 age age NN cord-309556-xv3413k1 113 4 - - HYPH cord-309556-xv3413k1 113 5 associated associate VBN cord-309556-xv3413k1 113 6 genes gene NNS cord-309556-xv3413k1 113 7 that that WDT cord-309556-xv3413k1 113 8 were be VBD cord-309556-xv3413k1 113 9 induced induce VBN cord-309556-xv3413k1 113 10 by by IN cord-309556-xv3413k1 113 11 SARS SARS NNP cord-309556-xv3413k1 113 12 - - HYPH cord-309556-xv3413k1 113 13 CoV-2 CoV-2 NNP cord-309556-xv3413k1 113 14 infection infection NN cord-309556-xv3413k1 113 15 , , , cord-309556-xv3413k1 113 16 the the DT cord-309556-xv3413k1 113 17 majority majority NN cord-309556-xv3413k1 113 18 of of IN cord-309556-xv3413k1 113 19 these these DT cord-309556-xv3413k1 113 20 genes gene NNS cord-309556-xv3413k1 113 21 increase increase VBP cord-309556-xv3413k1 113 22 in in IN cord-309556-xv3413k1 113 23 expression expression NN cord-309556-xv3413k1 113 24 with with IN cord-309556-xv3413k1 113 25 age age NN cord-309556-xv3413k1 113 26 ( ( -LRB- cord-309556-xv3413k1 113 27 Cluster cluster NN cord-309556-xv3413k1 113 28 1 1 CD cord-309556-xv3413k1 113 29 ) ) -RRB- cord-309556-xv3413k1 113 30 ( ( -LRB- cord-309556-xv3413k1 113 31 Figure figure NN cord-309556-xv3413k1 113 32 6g 6g NN cord-309556-xv3413k1 113 33 - - : cord-309556-xv3413k1 113 34 i i NN cord-309556-xv3413k1 113 35 ) ) -RRB- cord-309556-xv3413k1 113 36 . . . cord-309556-xv3413k1 114 1 Conversely conversely RB cord-309556-xv3413k1 114 2 , , , cord-309556-xv3413k1 114 3 among among IN cord-309556-xv3413k1 114 4 the the DT cord-309556-xv3413k1 114 5 age age NN cord-309556-xv3413k1 114 6 - - HYPH cord-309556-xv3413k1 114 7 associated associate VBN cord-309556-xv3413k1 114 8 genes gene NNS cord-309556-xv3413k1 114 9 that that WDT cord-309556-xv3413k1 114 10 were be VBD cord-309556-xv3413k1 114 11 repressed repress VBN cord-309556-xv3413k1 114 12 by by IN cord-309556-xv3413k1 114 13 SARS SARS NNP cord-309556-xv3413k1 114 14 - - HYPH cord-309556-xv3413k1 114 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 114 16 infection infection NN cord-309556-xv3413k1 114 17 , , , cord-309556-xv3413k1 114 18 most most JJS cord-309556-xv3413k1 114 19 of of IN cord-309556-xv3413k1 114 20 these these DT cord-309556-xv3413k1 114 21 genes gene NNS cord-309556-xv3413k1 114 22 decrease decrease VBP cord-309556-xv3413k1 114 23 in in IN cord-309556-xv3413k1 114 24 expression expression NN cord-309556-xv3413k1 114 25 with with IN cord-309556-xv3413k1 114 26 age age NN cord-309556-xv3413k1 114 27 ( ( -LRB- cord-309556-xv3413k1 114 28 Cluster cluster NN cord-309556-xv3413k1 114 29 2 2 CD cord-309556-xv3413k1 114 30 ) ) -RRB- cord-309556-xv3413k1 114 31 . . . cord-309556-xv3413k1 115 1 Of of IN cord-309556-xv3413k1 115 2 note note NN cord-309556-xv3413k1 115 3 , , , cord-309556-xv3413k1 115 4 the the DT cord-309556-xv3413k1 115 5 directionality directionality NN cord-309556-xv3413k1 115 6 of of IN cord-309556-xv3413k1 115 7 SARS SARS NNP cord-309556-xv3413k1 115 8 - - HYPH cord-309556-xv3413k1 115 9 CoV-2 CoV-2 NNP cord-309556-xv3413k1 115 10 regulation regulation NN cord-309556-xv3413k1 115 11 ( ( -LRB- cord-309556-xv3413k1 115 12 induced induce VBN cord-309556-xv3413k1 115 13 or or CC cord-309556-xv3413k1 115 14 repressed repress VBN cord-309556-xv3413k1 115 15 ) ) -RRB- cord-309556-xv3413k1 115 16 and and CC cord-309556-xv3413k1 115 17 the the DT cord-309556-xv3413k1 115 18 directionality directionality NN cord-309556-xv3413k1 115 19 of of IN cord-309556-xv3413k1 115 20 ageassociation ageassociation NN cord-309556-xv3413k1 115 21 ( ( -LRB- cord-309556-xv3413k1 115 22 increase increase NN cord-309556-xv3413k1 115 23 or or CC cord-309556-xv3413k1 115 24 decrease decrease VB cord-309556-xv3413k1 115 25 with with IN cord-309556-xv3413k1 115 26 age age NN cord-309556-xv3413k1 115 27 ) ) -RRB- cord-309556-xv3413k1 115 28 were be VBD cord-309556-xv3413k1 115 29 significantly significantly RB cord-309556-xv3413k1 115 30 associated associate VBN cord-309556-xv3413k1 115 31 across across IN cord-309556-xv3413k1 115 32 all all DT cord-309556-xv3413k1 115 33 3 3 CD cord-309556-xv3413k1 115 34 cell cell NN cord-309556-xv3413k1 115 35 lines line NNS cord-309556-xv3413k1 115 36 ( ( -LRB- cord-309556-xv3413k1 115 37 Figure figure NN cord-309556-xv3413k1 115 38 6g 6g NNPS cord-309556-xv3413k1 115 39 - - : cord-309556-xv3413k1 115 40 i i NN cord-309556-xv3413k1 115 41 ) ) -RRB- cord-309556-xv3413k1 115 42 . . . cord-309556-xv3413k1 116 1 To to TO cord-309556-xv3413k1 116 2 identify identify VB cord-309556-xv3413k1 116 3 a a DT cord-309556-xv3413k1 116 4 consensus consensus NN cord-309556-xv3413k1 116 5 set set VBN cord-309556-xv3413k1 116 6 of of IN cord-309556-xv3413k1 116 7 age age NN cord-309556-xv3413k1 116 8 - - HYPH cord-309556-xv3413k1 116 9 associated associate VBN cord-309556-xv3413k1 116 10 genes gene NNS cord-309556-xv3413k1 116 11 that that WDT cord-309556-xv3413k1 116 12 are be VBP cord-309556-xv3413k1 116 13 regulated regulate VBN cord-309556-xv3413k1 116 14 by by IN cord-309556-xv3413k1 116 15 SARS SARS NNP cord-309556-xv3413k1 116 16 - - HYPH cord-309556-xv3413k1 116 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 116 18 infection infection NN cord-309556-xv3413k1 116 19 , , , cord-309556-xv3413k1 116 20 we -PRON- PRP cord-309556-xv3413k1 116 21 integrated integrate VBD cord-309556-xv3413k1 116 22 the the DT cord-309556-xv3413k1 116 23 analyses analysis NNS cord-309556-xv3413k1 116 24 from from IN cord-309556-xv3413k1 116 25 all all DT cord-309556-xv3413k1 116 26 3 3 CD cord-309556-xv3413k1 116 27 cell cell NN cord-309556-xv3413k1 116 28 lines line NNS cord-309556-xv3413k1 116 29 . . . cord-309556-xv3413k1 117 1 603 603 CD cord-309556-xv3413k1 117 2 genes gene NNS cord-309556-xv3413k1 117 3 were be VBD cord-309556-xv3413k1 117 4 consistently consistently RB cord-309556-xv3413k1 117 5 induced induce VBN cord-309556-xv3413k1 117 6 by by IN cord-309556-xv3413k1 117 7 SARS SARS NNP cord-309556-xv3413k1 117 8 - - HYPH cord-309556-xv3413k1 117 9 CoV-2 CoV-2 NNP cord-309556-xv3413k1 117 10 infection infection NN cord-309556-xv3413k1 117 11 ( ( -LRB- cord-309556-xv3413k1 117 12 Figure figure NN cord-309556-xv3413k1 117 13 7a 7a NN cord-309556-xv3413k1 117 14 ) ) -RRB- cord-309556-xv3413k1 117 15 . . . cord-309556-xv3413k1 118 1 Of of IN cord-309556-xv3413k1 118 2 these these DT cord-309556-xv3413k1 118 3 , , , cord-309556-xv3413k1 118 4 20 20 CD cord-309556-xv3413k1 118 5 genes gene NNS cord-309556-xv3413k1 118 6 are be VBP cord-309556-xv3413k1 118 7 in in IN cord-309556-xv3413k1 118 8 Cluster cluster NN cord-309556-xv3413k1 118 9 1 1 CD cord-309556-xv3413k1 118 10 ( ( -LRB- cord-309556-xv3413k1 118 11 increase increase NN cord-309556-xv3413k1 118 12 with with IN cord-309556-xv3413k1 118 13 age age NN cord-309556-xv3413k1 118 14 ) ) -RRB- cord-309556-xv3413k1 118 15 and and CC cord-309556-xv3413k1 118 16 2 2 CD cord-309556-xv3413k1 118 17 genes gene NNS cord-309556-xv3413k1 118 18 are be VBP cord-309556-xv3413k1 118 19 in in IN cord-309556-xv3413k1 118 20 Cluster cluster NN cord-309556-xv3413k1 118 21 2 2 CD cord-309556-xv3413k1 118 22 ( ( -LRB- cord-309556-xv3413k1 118 23 decrease decrease NN cord-309556-xv3413k1 118 24 with with IN cord-309556-xv3413k1 118 25 age age NN cord-309556-xv3413k1 118 26 ) ) -RRB- cord-309556-xv3413k1 118 27 . . . cord-309556-xv3413k1 119 1 The the DT cord-309556-xv3413k1 119 2 20 20 CD cord-309556-xv3413k1 119 3 induced induce VBN cord-309556-xv3413k1 119 4 genes gene NNS cord-309556-xv3413k1 119 5 in in IN cord-309556-xv3413k1 119 6 Cluster cluster NN cord-309556-xv3413k1 119 7 1 1 CD cord-309556-xv3413k1 119 8 include include VBP cord-309556-xv3413k1 119 9 several several JJ cord-309556-xv3413k1 119 10 factors factor NNS cord-309556-xv3413k1 119 11 involved involve VBN cord-309556-xv3413k1 119 12 in in IN cord-309556-xv3413k1 119 13 RAS RAS NNP cord-309556-xv3413k1 119 14 signaling signal VBG cord-309556-xv3413k1 119 15 ( ( -LRB- cord-309556-xv3413k1 119 16 RAB8B RAB8B NNP cord-309556-xv3413k1 119 17 , , , cord-309556-xv3413k1 119 18 RASA2 RASA2 NNS cord-309556-xv3413k1 119 19 , , , cord-309556-xv3413k1 119 20 and and CC cord-309556-xv3413k1 119 21 RASGRP1 RASGRP1 NNP cord-309556-xv3413k1 119 22 ) ) -RRB- cord-309556-xv3413k1 119 23 as as RB cord-309556-xv3413k1 119 24 well well RB cord-309556-xv3413k1 119 25 as as IN cord-309556-xv3413k1 119 26 CLK1 CLK1 NNP cord-309556-xv3413k1 119 27 , , , cord-309556-xv3413k1 119 28 which which WDT cord-309556-xv3413k1 119 29 was be VBD cord-309556-xv3413k1 119 30 shown show VBN cord-309556-xv3413k1 119 31 to to TO cord-309556-xv3413k1 119 32 be be VB cord-309556-xv3413k1 119 33 involved involve VBN cord-309556-xv3413k1 119 34 in in IN cord-309556-xv3413k1 119 35 host host NN cord-309556-xv3413k1 119 36 responses response NNS cord-309556-xv3413k1 119 37 to to IN cord-309556-xv3413k1 119 38 SARS SARS NNP cord-309556-xv3413k1 119 39 - - HYPH cord-309556-xv3413k1 119 40 CoV CoV NNP cord-309556-xv3413k1 119 41 infection infection NN cord-309556-xv3413k1 119 42 ( ( -LRB- cord-309556-xv3413k1 119 43 Figure figure NN cord-309556-xv3413k1 119 44 4a 4a CD cord-309556-xv3413k1 119 45 - - HYPH cord-309556-xv3413k1 119 46 b b NN cord-309556-xv3413k1 119 47 ) ) -RRB- cord-309556-xv3413k1 119 48 . . . cord-309556-xv3413k1 120 1 On on IN cord-309556-xv3413k1 120 2 the the DT cord-309556-xv3413k1 120 3 other other JJ cord-309556-xv3413k1 120 4 hand hand NN cord-309556-xv3413k1 120 5 , , , cord-309556-xv3413k1 120 6 641 641 CD cord-309556-xv3413k1 120 7 genes gene NNS cord-309556-xv3413k1 120 8 were be VBD cord-309556-xv3413k1 120 9 concordantly concordantly RB cord-309556-xv3413k1 120 10 repressed repress VBN cord-309556-xv3413k1 120 11 by by IN cord-309556-xv3413k1 120 12 SARS SARS NNP cord-309556-xv3413k1 120 13 - - HYPH cord-309556-xv3413k1 120 14 CoV-2 CoV-2 NNP cord-309556-xv3413k1 120 15 infection infection NN cord-309556-xv3413k1 120 16 ( ( -LRB- cord-309556-xv3413k1 120 17 Figure figure NN cord-309556-xv3413k1 120 18 7b 7b NN cord-309556-xv3413k1 120 19 _SP cord-309556-xv3413k1 121 1 Here here RB cord-309556-xv3413k1 121 2 we -PRON- PRP cord-309556-xv3413k1 121 3 systematically systematically RB cord-309556-xv3413k1 121 4 analyzed analyze VBD cord-309556-xv3413k1 121 5 the the DT cord-309556-xv3413k1 121 6 transcriptome transcriptome NN cord-309556-xv3413k1 121 7 of of IN cord-309556-xv3413k1 121 8 the the DT cord-309556-xv3413k1 121 9 aging age VBG cord-309556-xv3413k1 121 10 human human JJ cord-309556-xv3413k1 121 11 lung lung NN cord-309556-xv3413k1 121 12 and and CC cord-309556-xv3413k1 121 13 its -PRON- PRP$ cord-309556-xv3413k1 121 14 relationship relationship NN cord-309556-xv3413k1 121 15 to to IN cord-309556-xv3413k1 121 16 SARS SARS NNP cord-309556-xv3413k1 121 17 - - HYPH cord-309556-xv3413k1 121 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 121 19 . . . cord-309556-xv3413k1 122 1 We -PRON- PRP cord-309556-xv3413k1 122 2 found find VBD cord-309556-xv3413k1 122 3 that that IN cord-309556-xv3413k1 122 4 the the DT cord-309556-xv3413k1 122 5 aging age VBG cord-309556-xv3413k1 122 6 lung lung NN cord-309556-xv3413k1 122 7 is be VBZ cord-309556-xv3413k1 122 8 characterized characterize VBN cord-309556-xv3413k1 122 9 by by IN cord-309556-xv3413k1 122 10 a a DT cord-309556-xv3413k1 122 11 wide wide JJ cord-309556-xv3413k1 122 12 array array NN cord-309556-xv3413k1 122 13 of of IN cord-309556-xv3413k1 122 14 changes change NNS cord-309556-xv3413k1 122 15 that that WDT cord-309556-xv3413k1 122 16 could could MD cord-309556-xv3413k1 122 17 contribute contribute VB cord-309556-xv3413k1 122 18 to to IN cord-309556-xv3413k1 122 19 the the DT cord-309556-xv3413k1 122 20 worse bad JJR cord-309556-xv3413k1 122 21 outcomes outcome NNS cord-309556-xv3413k1 122 22 of of IN cord-309556-xv3413k1 122 23 older old JJR cord-309556-xv3413k1 122 24 patients patient NNS cord-309556-xv3413k1 122 25 with with IN cord-309556-xv3413k1 122 26 COVID-19 COVID-19 NNP cord-309556-xv3413k1 122 27 . . . cord-309556-xv3413k1 123 1 On on IN cord-309556-xv3413k1 123 2 the the DT cord-309556-xv3413k1 123 3 transcriptional transcriptional JJ cord-309556-xv3413k1 123 4 level level NN cord-309556-xv3413k1 123 5 , , , cord-309556-xv3413k1 123 6 we -PRON- PRP cord-309556-xv3413k1 123 7 first first RB cord-309556-xv3413k1 123 8 identified identify VBD cord-309556-xv3413k1 123 9 1,285 1,285 CD cord-309556-xv3413k1 123 10 genes gene NNS cord-309556-xv3413k1 123 11 that that WDT cord-309556-xv3413k1 123 12 exhibit exhibit VBP cord-309556-xv3413k1 123 13 age age NN cord-309556-xv3413k1 123 14 - - HYPH cord-309556-xv3413k1 123 15 associated associate VBN cord-309556-xv3413k1 123 16 expression expression NN cord-309556-xv3413k1 123 17 patterns pattern NNS cord-309556-xv3413k1 123 18 . . . cord-309556-xv3413k1 124 1 We -PRON- PRP cord-309556-xv3413k1 124 2 subsequently subsequently RB cord-309556-xv3413k1 124 3 demonstrated demonstrate VBD cord-309556-xv3413k1 124 4 that that IN cord-309556-xv3413k1 124 5 the the DT cord-309556-xv3413k1 124 6 aging age VBG cord-309556-xv3413k1 124 7 lung lung NN cord-309556-xv3413k1 124 8 is be VBZ cord-309556-xv3413k1 124 9 characterized characterize VBN cord-309556-xv3413k1 124 10 by by IN cord-309556-xv3413k1 124 11 several several JJ cord-309556-xv3413k1 124 12 gene gene NN cord-309556-xv3413k1 124 13 signatures signature NNS cord-309556-xv3413k1 124 14 , , , cord-309556-xv3413k1 124 15 including include VBG cord-309556-xv3413k1 124 16 increased increase VBN cord-309556-xv3413k1 124 17 vascular vascular JJ cord-309556-xv3413k1 124 18 smooth smooth JJ cord-309556-xv3413k1 124 19 muscle muscle NN cord-309556-xv3413k1 124 20 contraction contraction NN cord-309556-xv3413k1 124 21 , , , cord-309556-xv3413k1 124 22 reduced reduce VBN cord-309556-xv3413k1 124 23 mitochondrial mitochondrial JJ cord-309556-xv3413k1 124 24 activity activity NN cord-309556-xv3413k1 124 25 , , , cord-309556-xv3413k1 124 26 and and CC cord-309556-xv3413k1 124 27 decreased decrease VBD cord-309556-xv3413k1 124 28 lipid lipid NN cord-309556-xv3413k1 124 29 metabolism metabolism NN cord-309556-xv3413k1 124 30 . . . cord-309556-xv3413k1 125 1 By by IN cord-309556-xv3413k1 125 2 integrating integrate VBG cord-309556-xv3413k1 125 3 these these DT cord-309556-xv3413k1 125 4 data datum NNS cord-309556-xv3413k1 125 5 with with IN cord-309556-xv3413k1 125 6 single single JJ cord-309556-xv3413k1 125 7 cell cell NN cord-309556-xv3413k1 125 8 transcriptomes transcriptome NNS cord-309556-xv3413k1 125 9 of of IN cord-309556-xv3413k1 125 10 human human JJ cord-309556-xv3413k1 125 11 lung lung NN cord-309556-xv3413k1 125 12 tissue tissue NN cord-309556-xv3413k1 125 13 , , , cord-309556-xv3413k1 125 14 we -PRON- PRP cord-309556-xv3413k1 125 15 further further RB cord-309556-xv3413k1 125 16 pinpointed pinpoint VBD cord-309556-xv3413k1 125 17 the the DT cord-309556-xv3413k1 125 18 specific specific JJ cord-309556-xv3413k1 125 19 cell cell NN cord-309556-xv3413k1 125 20 types type NNS cord-309556-xv3413k1 125 21 that that WDT cord-309556-xv3413k1 125 22 normally normally RB cord-309556-xv3413k1 125 23 express express VBP cord-309556-xv3413k1 125 24 the the DT cord-309556-xv3413k1 125 25 age age NN cord-309556-xv3413k1 125 26 - - HYPH cord-309556-xv3413k1 125 27 associated associate VBN cord-309556-xv3413k1 125 28 genes gene NNS cord-309556-xv3413k1 125 29 . . . cord-309556-xv3413k1 126 1 We -PRON- PRP cord-309556-xv3413k1 126 2 showed show VBD cord-309556-xv3413k1 126 3 that that IN cord-309556-xv3413k1 126 4 lung lung NN cord-309556-xv3413k1 126 5 epithelial epithelial JJ cord-309556-xv3413k1 126 6 cells cell NNS cord-309556-xv3413k1 126 7 , , , cord-309556-xv3413k1 126 8 macrophages macrophage NNS cord-309556-xv3413k1 126 9 , , , cord-309556-xv3413k1 126 10 and and CC cord-309556-xv3413k1 126 11 Th1 th1 NN cord-309556-xv3413k1 126 12 cells cell NNS cord-309556-xv3413k1 126 13 decrease decrease VBP cord-309556-xv3413k1 126 14 in in IN cord-309556-xv3413k1 126 15 abundance abundance NN cord-309556-xv3413k1 126 16 with with IN cord-309556-xv3413k1 126 17 age age NN cord-309556-xv3413k1 126 18 , , , cord-309556-xv3413k1 126 19 whereas whereas IN cord-309556-xv3413k1 126 20 fibroblasts fibroblast NNS cord-309556-xv3413k1 126 21 and and CC cord-309556-xv3413k1 126 22 pericytes pericyte NNS cord-309556-xv3413k1 126 23 increase increase VBP cord-309556-xv3413k1 126 24 in in IN cord-309556-xv3413k1 126 25 abundance abundance NN cord-309556-xv3413k1 126 26 with with IN cord-309556-xv3413k1 126 27 age age NN cord-309556-xv3413k1 126 28 . . . cord-309556-xv3413k1 127 1 These these DT cord-309556-xv3413k1 127 2 systematic systematic JJ cord-309556-xv3413k1 127 3 changes change NNS cord-309556-xv3413k1 127 4 in in IN cord-309556-xv3413k1 127 5 tissue tissue NN cord-309556-xv3413k1 127 6 composition composition NN cord-309556-xv3413k1 127 7 and and CC cord-309556-xv3413k1 127 8 cell cell NN cord-309556-xv3413k1 127 9 interactions interaction NNS cord-309556-xv3413k1 127 10 can can MD cord-309556-xv3413k1 127 11 potentially potentially RB cord-309556-xv3413k1 127 12 propagate propagate VB cord-309556-xv3413k1 127 13 positive positive JJ cord-309556-xv3413k1 127 14 feedback feedback NN cord-309556-xv3413k1 127 15 loops loop NNS cord-309556-xv3413k1 127 16 that that WDT cord-309556-xv3413k1 127 17 predispose predispose VBP cord-309556-xv3413k1 127 18 the the DT cord-309556-xv3413k1 127 19 airways airway NNS cord-309556-xv3413k1 127 20 to to IN cord-309556-xv3413k1 127 21 pathological pathological JJ cord-309556-xv3413k1 127 22 contraction contraction NN cord-309556-xv3413k1 127 23 69 69 CD cord-309556-xv3413k1 127 24 . . . cord-309556-xv3413k1 128 1 We -PRON- PRP cord-309556-xv3413k1 128 2 find find VBP cord-309556-xv3413k1 128 3 that that IN cord-309556-xv3413k1 128 4 some some DT cord-309556-xv3413k1 128 5 of of IN cord-309556-xv3413k1 128 6 the the DT cord-309556-xv3413k1 128 7 age age NN cord-309556-xv3413k1 128 8 - - HYPH cord-309556-xv3413k1 128 9 associated associate VBN cord-309556-xv3413k1 128 10 genes gene NNS cord-309556-xv3413k1 128 11 have have VBP cord-309556-xv3413k1 128 12 been be VBN cord-309556-xv3413k1 128 13 previously previously RB cord-309556-xv3413k1 128 14 identified identify VBN cord-309556-xv3413k1 128 15 as as IN cord-309556-xv3413k1 128 16 host host NN cord-309556-xv3413k1 128 17 factors factor NNS cord-309556-xv3413k1 128 18 with with IN cord-309556-xv3413k1 128 19 a a DT cord-309556-xv3413k1 128 20 functional functional JJ cord-309556-xv3413k1 128 21 role role NN cord-309556-xv3413k1 128 22 in in IN cord-309556-xv3413k1 128 23 SARS SARS NNP cord-309556-xv3413k1 128 24 - - HYPH cord-309556-xv3413k1 128 25 CoV CoV NNP cord-309556-xv3413k1 128 26 replication replication NN cord-309556-xv3413k1 128 27 63 63 CD cord-309556-xv3413k1 128 28 , , , cord-309556-xv3413k1 128 29 and and CC cord-309556-xv3413k1 128 30 a a DT cord-309556-xv3413k1 128 31 fraction fraction NN cord-309556-xv3413k1 128 32 of of IN cord-309556-xv3413k1 128 33 the the DT cord-309556-xv3413k1 128 34 age age NN cord-309556-xv3413k1 128 35 - - HYPH cord-309556-xv3413k1 128 36 associated associate VBN cord-309556-xv3413k1 128 37 factors factor NNS cord-309556-xv3413k1 128 38 have have VBP cord-309556-xv3413k1 128 39 been be VBN cord-309556-xv3413k1 128 40 shown show VBN cord-309556-xv3413k1 128 41 to to TO cord-309556-xv3413k1 128 42 directly directly RB cord-309556-xv3413k1 128 43 interact interact VB cord-309556-xv3413k1 128 44 with with IN cord-309556-xv3413k1 128 45 the the DT cord-309556-xv3413k1 128 46 SARS SARS NNP cord-309556-xv3413k1 128 47 - - HYPH cord-309556-xv3413k1 128 48 CoV-2 CoV-2 NNP cord-309556-xv3413k1 128 49 proteome proteome NN cord-309556-xv3413k1 128 50 64 64 CD cord-309556-xv3413k1 128 51 . . . cord-309556-xv3413k1 129 1 Furthermore furthermore RB cord-309556-xv3413k1 129 2 , , , cord-309556-xv3413k1 129 3 age age NN cord-309556-xv3413k1 129 4 - - HYPH cord-309556-xv3413k1 129 5 associated associate VBN cord-309556-xv3413k1 129 6 genes gene NNS cord-309556-xv3413k1 129 7 are be VBP cord-309556-xv3413k1 129 8 significantly significantly RB cord-309556-xv3413k1 129 9 enriched enrich VBN cord-309556-xv3413k1 129 10 among among IN cord-309556-xv3413k1 129 11 genes gene NNS cord-309556-xv3413k1 129 12 directly directly RB cord-309556-xv3413k1 129 13 regulated regulate VBN cord-309556-xv3413k1 129 14 by by IN cord-309556-xv3413k1 129 15 SARS SARS NNP cord-309556-xv3413k1 129 16 - - HYPH cord-309556-xv3413k1 129 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 129 18 infection infection NN cord-309556-xv3413k1 129 19 68 68 CD cord-309556-xv3413k1 129 20 , , , cord-309556-xv3413k1 129 21 suggesting suggest VBG cord-309556-xv3413k1 129 22 transcriptional transcriptional JJ cord-309556-xv3413k1 129 23 parallels parallel NNS cord-309556-xv3413k1 129 24 between between IN cord-309556-xv3413k1 129 25 the the DT cord-309556-xv3413k1 129 26 aging age VBG cord-309556-xv3413k1 129 27 lung lung NN cord-309556-xv3413k1 129 28 and and CC cord-309556-xv3413k1 129 29 SARS SARS NNP cord-309556-xv3413k1 129 30 - - HYPH cord-309556-xv3413k1 129 31 CoV-2 CoV-2 NNP cord-309556-xv3413k1 129 32 infection infection NN cord-309556-xv3413k1 129 33 . . . cord-309556-xv3413k1 130 1 Moreover moreover RB cord-309556-xv3413k1 130 2 , , , cord-309556-xv3413k1 130 3 it -PRON- PRP cord-309556-xv3413k1 130 4 is be VBZ cord-309556-xv3413k1 130 5 intriguing intriguing JJ cord-309556-xv3413k1 130 6 that that IN cord-309556-xv3413k1 130 7 the the DT cord-309556-xv3413k1 130 8 genes gene NNS cord-309556-xv3413k1 130 9 induced induce VBN cord-309556-xv3413k1 130 10 by by IN cord-309556-xv3413k1 130 11 SARS SARS NNP cord-309556-xv3413k1 130 12 - - HYPH cord-309556-xv3413k1 130 13 CoV-2 CoV-2 NNP cord-309556-xv3413k1 130 14 infection infection NN cord-309556-xv3413k1 130 15 tend tend VBP cord-309556-xv3413k1 130 16 to to TO cord-309556-xv3413k1 130 17 increase increase VB cord-309556-xv3413k1 130 18 in in IN cord-309556-xv3413k1 130 19 expression expression NN cord-309556-xv3413k1 130 20 with with IN cord-309556-xv3413k1 130 21 aging age VBG cord-309556-xv3413k1 130 22 , , , cord-309556-xv3413k1 130 23 and and CC cord-309556-xv3413k1 130 24 vice vice NN cord-309556-xv3413k1 130 25 versa versa RB cord-309556-xv3413k1 130 26 . . . cord-309556-xv3413k1 131 1 Whether whether IN cord-309556-xv3413k1 131 2 any any DT cord-309556-xv3413k1 131 3 of of IN cord-309556-xv3413k1 131 4 these these DT cord-309556-xv3413k1 131 5 age age NN cord-309556-xv3413k1 131 6 - - HYPH cord-309556-xv3413k1 131 7 associated associate VBN cord-309556-xv3413k1 131 8 changes change NNS cord-309556-xv3413k1 131 9 causally causally RB cord-309556-xv3413k1 131 10 contribute contribute VBP cord-309556-xv3413k1 131 11 to to IN cord-309556-xv3413k1 131 12 the the DT cord-309556-xv3413k1 131 13 heightened heightened JJ cord-309556-xv3413k1 131 14 susceptibility susceptibility NN cord-309556-xv3413k1 131 15 of of IN cord-309556-xv3413k1 131 16 COVID-19 covid-19 DT cord-309556-xv3413k1 131 17 in in IN cord-309556-xv3413k1 131 18 older old JJR cord-309556-xv3413k1 131 19 populations population NNS cord-309556-xv3413k1 131 20 remains remain VBZ cord-309556-xv3413k1 131 21 to to TO cord-309556-xv3413k1 131 22 be be VB cord-309556-xv3413k1 131 23 experimentally experimentally RB cord-309556-xv3413k1 131 24 tested test VBN cord-309556-xv3413k1 131 25 . . . cord-309556-xv3413k1 132 1 It -PRON- PRP cord-309556-xv3413k1 132 2 is be VBZ cord-309556-xv3413k1 132 3 also also RB cord-309556-xv3413k1 132 4 important important JJ cord-309556-xv3413k1 132 5 to to TO cord-309556-xv3413k1 132 6 note note VB cord-309556-xv3413k1 132 7 that that IN cord-309556-xv3413k1 132 8 the the DT cord-309556-xv3413k1 132 9 datasets dataset NNS cord-309556-xv3413k1 132 10 analyzed analyze VBN cord-309556-xv3413k1 132 11 here here RB cord-309556-xv3413k1 132 12 were be VBD cord-309556-xv3413k1 132 13 not not RB cord-309556-xv3413k1 132 14 from from IN cord-309556-xv3413k1 132 15 patients patient NNS cord-309556-xv3413k1 132 16 with with IN cord-309556-xv3413k1 132 17 COVID-19 COVID-19 NNP cord-309556-xv3413k1 132 18 . . . cord-309556-xv3413k1 133 1 Given give VBN cord-309556-xv3413k1 133 2 the the DT cord-309556-xv3413k1 133 3 limited limited JJ cord-309556-xv3413k1 133 4 data datum NNS cord-309556-xv3413k1 133 5 that that WDT cord-309556-xv3413k1 133 6 is be VBZ cord-309556-xv3413k1 133 7 currently currently RB cord-309556-xv3413k1 133 8 publicly publicly RB cord-309556-xv3413k1 133 9 available available JJ cord-309556-xv3413k1 133 10 , , , cord-309556-xv3413k1 133 11 we -PRON- PRP cord-309556-xv3413k1 133 12 emphasize emphasize VBP cord-309556-xv3413k1 133 13 that that IN cord-309556-xv3413k1 133 14 the the DT cord-309556-xv3413k1 133 15 analyses analysis NNS cord-309556-xv3413k1 133 16 presented present VBN cord-309556-xv3413k1 133 17 here here RB cord-309556-xv3413k1 133 18 at at IN cord-309556-xv3413k1 133 19 this this DT cord-309556-xv3413k1 133 20 stage stage NN cord-309556-xv3413k1 133 21 should should MD cord-309556-xv3413k1 133 22 not not RB cord-309556-xv3413k1 133 23 be be VB cord-309556-xv3413k1 133 24 used use VBN cord-309556-xv3413k1 133 25 to to TO cord-309556-xv3413k1 133 26 guide guide VB cord-309556-xv3413k1 133 27 clinical clinical JJ cord-309556-xv3413k1 133 28 practice practice NN cord-309556-xv3413k1 133 29 . . . cord-309556-xv3413k1 134 1 These these DT cord-309556-xv3413k1 134 2 analyses analysis NNS cord-309556-xv3413k1 134 3 resulted result VBD cord-309556-xv3413k1 134 4 in in IN cord-309556-xv3413k1 134 5 a a DT cord-309556-xv3413k1 134 6 number number NN cord-309556-xv3413k1 134 7 of of IN cord-309556-xv3413k1 134 8 previously previously RB cord-309556-xv3413k1 134 9 unnoted unnoted JJ cord-309556-xv3413k1 134 10 observations observation NNS cord-309556-xv3413k1 134 11 and and CC cord-309556-xv3413k1 134 12 phenomena phenomena JJ cord-309556-xv3413k1 134 13 that that WDT cord-309556-xv3413k1 134 14 illuminate illuminate VBP cord-309556-xv3413k1 134 15 new new JJ cord-309556-xv3413k1 134 16 directions direction NNS cord-309556-xv3413k1 134 17 for for IN cord-309556-xv3413k1 134 18 subsequent subsequent JJ cord-309556-xv3413k1 134 19 research research NN cord-309556-xv3413k1 134 20 efforts effort NNS cord-309556-xv3413k1 134 21 on on IN cord-309556-xv3413k1 134 22 SARS SARS NNP cord-309556-xv3413k1 134 23 - - HYPH cord-309556-xv3413k1 134 24 CoV-2 CoV-2 NNP cord-309556-xv3413k1 134 25 , , , cord-309556-xv3413k1 134 26 generating generate VBG cord-309556-xv3413k1 134 27 genetically genetically RB cord-309556-xv3413k1 134 28 - - HYPH cord-309556-xv3413k1 134 29 tractable tractable JJ cord-309556-xv3413k1 134 30 hypotheses hypothesis NNS cord-309556-xv3413k1 134 31 for for IN cord-309556-xv3413k1 134 32 why why WRB cord-309556-xv3413k1 134 33 advanced advanced JJ cord-309556-xv3413k1 134 34 age age NN cord-309556-xv3413k1 134 35 is be VBZ cord-309556-xv3413k1 134 36 one one CD cord-309556-xv3413k1 134 37 of of IN cord-309556-xv3413k1 134 38 the the DT cord-309556-xv3413k1 134 39 strongest strong JJS cord-309556-xv3413k1 134 40 risk risk NN cord-309556-xv3413k1 134 41 factors factor NNS cord-309556-xv3413k1 134 42 for for IN cord-309556-xv3413k1 134 43 COVID-19 covid-19 JJ cord-309556-xv3413k1 134 44 morbidity morbidity NN cord-309556-xv3413k1 134 45 and and CC cord-309556-xv3413k1 134 46 mortality mortality NN cord-309556-xv3413k1 134 47 . . . cord-309556-xv3413k1 135 1 Ultimately ultimately RB cord-309556-xv3413k1 135 2 , , , cord-309556-xv3413k1 135 3 we -PRON- PRP cord-309556-xv3413k1 135 4 hope hope VBP cord-309556-xv3413k1 135 5 such such JJ cord-309556-xv3413k1 135 6 knowledge knowledge NN cord-309556-xv3413k1 135 7 can can MD cord-309556-xv3413k1 135 8 help help VB cord-309556-xv3413k1 135 9 the the DT cord-309556-xv3413k1 135 10 field field NN cord-309556-xv3413k1 135 11 to to TO cord-309556-xv3413k1 135 12 sooner sooner RB cord-309556-xv3413k1 135 13 develop develop VB cord-309556-xv3413k1 135 14 rational rational JJ cord-309556-xv3413k1 135 15 therapies therapy NNS cord-309556-xv3413k1 135 16 for for IN cord-309556-xv3413k1 135 17 COVID-19 COVID-19 NNP cord-309556-xv3413k1 135 18 that that WDT cord-309556-xv3413k1 135 19 are be VBP cord-309556-xv3413k1 135 20 rooted root VBN cord-309556-xv3413k1 135 21 in in IN cord-309556-xv3413k1 135 22 concrete concrete JJ cord-309556-xv3413k1 135 23 biological biological JJ cord-309556-xv3413k1 135 24 mechanisms mechanism NNS cord-309556-xv3413k1 135 25 . . . cord-309556-xv3413k1 136 1 We -PRON- PRP cord-309556-xv3413k1 136 2 thank thank VBP cord-309556-xv3413k1 136 3 Akiko Akiko NNP cord-309556-xv3413k1 136 4 Iwasaki Iwasaki NNP cord-309556-xv3413k1 136 5 , , , cord-309556-xv3413k1 136 6 Craig Craig NNP cord-309556-xv3413k1 136 7 Wilen Wilen NNP cord-309556-xv3413k1 136 8 , , , cord-309556-xv3413k1 136 9 Hongyu Hongyu NNP cord-309556-xv3413k1 136 10 Zhao Zhao NNP cord-309556-xv3413k1 136 11 , , , cord-309556-xv3413k1 136 12 Wei Wei NNP cord-309556-xv3413k1 136 13 Liu Liu NNP cord-309556-xv3413k1 136 14 , , , cord-309556-xv3413k1 136 15 Wenxuan Wenxuan NNP cord-309556-xv3413k1 136 16 Deng Deng NNP cord-309556-xv3413k1 136 17 , , , cord-309556-xv3413k1 136 18 Andre Andre NNP cord-309556-xv3413k1 136 19 Levchenko Levchenko NNP cord-309556-xv3413k1 136 20 , , , cord-309556-xv3413k1 136 21 Katie Katie NNP cord-309556-xv3413k1 136 22 Zhu Zhu NNP cord-309556-xv3413k1 136 23 , , , cord-309556-xv3413k1 136 24 Ruth Ruth NNP cord-309556-xv3413k1 136 25 Montgomery Montgomery NNP cord-309556-xv3413k1 136 26 , , , cord-309556-xv3413k1 136 27 Bram Bram NNP cord-309556-xv3413k1 136 28 Gerriten Gerriten NNP cord-309556-xv3413k1 136 29 , , , cord-309556-xv3413k1 136 30 Steven Steven NNP cord-309556-xv3413k1 136 31 Kleinstein Kleinstein NNP cord-309556-xv3413k1 136 32 and and CC cord-309556-xv3413k1 136 33 a a DT cord-309556-xv3413k1 136 34 number number NN cord-309556-xv3413k1 136 35 of of IN cord-309556-xv3413k1 136 36 other other JJ cord-309556-xv3413k1 136 37 colleagues colleague NNS cord-309556-xv3413k1 136 38 for for IN cord-309556-xv3413k1 136 39 their -PRON- PRP$ cord-309556-xv3413k1 136 40 critical critical JJ cord-309556-xv3413k1 136 41 comments comment NNS cord-309556-xv3413k1 136 42 and and CC cord-309556-xv3413k1 136 43 suggestions suggestion NNS cord-309556-xv3413k1 136 44 , , , cord-309556-xv3413k1 136 45 which which WDT cord-309556-xv3413k1 136 46 were be VBD cord-309556-xv3413k1 136 47 incorporated incorporate VBN cord-309556-xv3413k1 136 48 into into IN cord-309556-xv3413k1 136 49 the the DT cord-309556-xv3413k1 136 50 analyses analysis NNS cord-309556-xv3413k1 136 51 and and CC cord-309556-xv3413k1 136 52 manuscript manuscript NN cord-309556-xv3413k1 136 53 . . . cord-309556-xv3413k1 137 1 We -PRON- PRP cord-309556-xv3413k1 137 2 thank thank VBP cord-309556-xv3413k1 137 3 Antonio Antonio NNP cord-309556-xv3413k1 137 4 Giraldez Giraldez NNP cord-309556-xv3413k1 137 5 , , , cord-309556-xv3413k1 137 6 Andre Andre NNP cord-309556-xv3413k1 137 7 Levchenko Levchenko NNP cord-309556-xv3413k1 137 8 , , , cord-309556-xv3413k1 137 9 Chris Chris NNP cord-309556-xv3413k1 137 10 Incarvito Incarvito NNP cord-309556-xv3413k1 137 11 , , , cord-309556-xv3413k1 137 12 Mike Mike NNP cord-309556-xv3413k1 137 13 Crair Crair NNP cord-309556-xv3413k1 137 14 , , , cord-309556-xv3413k1 137 15 and and CC cord-309556-xv3413k1 137 16 Scott Scott NNP cord-309556-xv3413k1 137 17 Strobel Strobel NNP cord-309556-xv3413k1 137 18 for for IN cord-309556-xv3413k1 137 19 their -PRON- PRP$ cord-309556-xv3413k1 137 20 support support NN cord-309556-xv3413k1 137 21 on on IN cord-309556-xv3413k1 137 22 COVID-19 COVID-19 NNP cord-309556-xv3413k1 137 23 research research NN cord-309556-xv3413k1 137 24 . . . cord-309556-xv3413k1 138 1 We -PRON- PRP cord-309556-xv3413k1 138 2 thank thank VBP cord-309556-xv3413k1 138 3 our -PRON- PRP$ cord-309556-xv3413k1 138 4 colleagues colleague NNS cord-309556-xv3413k1 138 5 in in IN cord-309556-xv3413k1 138 6 the the DT cord-309556-xv3413k1 138 7 Chen Chen NNP cord-309556-xv3413k1 138 8 lab lab NN cord-309556-xv3413k1 138 9 , , , cord-309556-xv3413k1 138 10 the the DT cord-309556-xv3413k1 138 11 Genetics Genetics NNP cord-309556-xv3413k1 138 12 Department Department NNP cord-309556-xv3413k1 138 13 , , , cord-309556-xv3413k1 138 14 the the DT cord-309556-xv3413k1 138 15 Systems Systems NNPS cord-309556-xv3413k1 138 16 Biology Biology NNP cord-309556-xv3413k1 138 17 Institute Institute NNP cord-309556-xv3413k1 138 18 and and CC cord-309556-xv3413k1 138 19 various various JJ cord-309556-xv3413k1 138 20 Yale Yale NNP cord-309556-xv3413k1 138 21 entities entity NNS cord-309556-xv3413k1 138 22 . . . cord-309556-xv3413k1 139 1 We -PRON- PRP cord-309556-xv3413k1 139 2 also also RB cord-309556-xv3413k1 139 3 want want VBP cord-309556-xv3413k1 139 4 to to TO cord-309556-xv3413k1 139 5 thank thank VB cord-309556-xv3413k1 139 6 all all DT cord-309556-xv3413k1 139 7 of of IN cord-309556-xv3413k1 139 8 the the DT cord-309556-xv3413k1 139 9 healthcare healthcare NN cord-309556-xv3413k1 139 10 workers worker NNS cord-309556-xv3413k1 139 11 who who WP cord-309556-xv3413k1 139 12 are be VBP cord-309556-xv3413k1 139 13 risking risk VBG cord-309556-xv3413k1 139 14 their -PRON- PRP$ cord-309556-xv3413k1 139 15 health health NN cord-309556-xv3413k1 139 16 on on IN cord-309556-xv3413k1 139 17 the the DT cord-309556-xv3413k1 139 18 frontlines frontline NNS cord-309556-xv3413k1 139 19 to to TO cord-309556-xv3413k1 139 20 treat treat VB cord-309556-xv3413k1 139 21 patients patient NNS cord-309556-xv3413k1 139 22 with with IN cord-309556-xv3413k1 139 23 this this DT cord-309556-xv3413k1 139 24 disease disease NN cord-309556-xv3413k1 139 25 . . . cord-309556-xv3413k1 140 1 RC RC NNP cord-309556-xv3413k1 140 2 and and CC cord-309556-xv3413k1 140 3 SC SC NNP cord-309556-xv3413k1 140 4 conceived conceive VBD cord-309556-xv3413k1 140 5 and and CC cord-309556-xv3413k1 140 6 designed design VBD cord-309556-xv3413k1 140 7 the the DT cord-309556-xv3413k1 140 8 study study NN cord-309556-xv3413k1 140 9 . . . cord-309556-xv3413k1 141 1 RC RC NNP cord-309556-xv3413k1 141 2 developed develop VBD cord-309556-xv3413k1 141 3 the the DT cord-309556-xv3413k1 141 4 analysis analysis NN cord-309556-xv3413k1 141 5 approach approach NN cord-309556-xv3413k1 141 6 , , , cord-309556-xv3413k1 141 7 performed perform VBD cord-309556-xv3413k1 141 8 all all DT cord-309556-xv3413k1 141 9 data data NN cord-309556-xv3413k1 141 10 analyses analysis NNS cord-309556-xv3413k1 141 11 , , , cord-309556-xv3413k1 141 12 and and CC cord-309556-xv3413k1 141 13 created create VBD cord-309556-xv3413k1 141 14 the the DT cord-309556-xv3413k1 141 15 figures figure NNS cord-309556-xv3413k1 141 16 . . . cord-309556-xv3413k1 142 1 RC RC NNP cord-309556-xv3413k1 142 2 and and CC cord-309556-xv3413k1 142 3 SC SC NNP cord-309556-xv3413k1 142 4 prepared prepare VBD cord-309556-xv3413k1 142 5 the the DT cord-309556-xv3413k1 142 6 manuscript manuscript NN cord-309556-xv3413k1 142 7 . . . cord-309556-xv3413k1 143 1 SC SC NNP cord-309556-xv3413k1 143 2 supervised supervise VBD cord-309556-xv3413k1 143 3 the the DT cord-309556-xv3413k1 143 4 work work NN cord-309556-xv3413k1 143 5 . . . cord-309556-xv3413k1 144 1 No no DT cord-309556-xv3413k1 144 2 competing compete VBG cord-309556-xv3413k1 144 3 interests interest NNS cord-309556-xv3413k1 144 4 related relate VBN cord-309556-xv3413k1 144 5 to to IN cord-309556-xv3413k1 144 6 this this DT cord-309556-xv3413k1 144 7 study study NN cord-309556-xv3413k1 144 8 . . . cord-309556-xv3413k1 145 1 The the DT cord-309556-xv3413k1 145 2 authors author NNS cord-309556-xv3413k1 145 3 have have VBP cord-309556-xv3413k1 145 4 no no DT cord-309556-xv3413k1 145 5 competing compete VBG cord-309556-xv3413k1 145 6 interests interest NNS cord-309556-xv3413k1 145 7 as as IN cord-309556-xv3413k1 145 8 defined define VBN cord-309556-xv3413k1 145 9 by by IN cord-309556-xv3413k1 145 10 Nature Nature NNP cord-309556-xv3413k1 145 11 Research Research NNP cord-309556-xv3413k1 145 12 , , , cord-309556-xv3413k1 145 13 or or CC cord-309556-xv3413k1 145 14 other other JJ cord-309556-xv3413k1 145 15 interests interest NNS cord-309556-xv3413k1 145 16 that that WDT cord-309556-xv3413k1 145 17 might may MD cord-309556-xv3413k1 145 18 be be VB cord-309556-xv3413k1 145 19 perceived perceive VBN cord-309556-xv3413k1 145 20 to to TO cord-309556-xv3413k1 145 21 influence influence VB cord-309556-xv3413k1 145 22 the the DT cord-309556-xv3413k1 145 23 interpretation interpretation NN cord-309556-xv3413k1 145 24 of of IN cord-309556-xv3413k1 145 25 the the DT cord-309556-xv3413k1 145 26 article article NN cord-309556-xv3413k1 145 27 . . . cord-309556-xv3413k1 146 1 The the DT cord-309556-xv3413k1 146 2 authors author NNS cord-309556-xv3413k1 146 3 are be VBP cord-309556-xv3413k1 146 4 committed commit VBN cord-309556-xv3413k1 146 5 to to TO cord-309556-xv3413k1 146 6 freely freely RB cord-309556-xv3413k1 146 7 share share VB cord-309556-xv3413k1 146 8 all all DT cord-309556-xv3413k1 146 9 COVID-19 covid-19 JJ cord-309556-xv3413k1 146 10 related related JJ cord-309556-xv3413k1 146 11 data datum NNS cord-309556-xv3413k1 146 12 , , , cord-309556-xv3413k1 146 13 knowledge knowledge NN cord-309556-xv3413k1 146 14 and and CC cord-309556-xv3413k1 146 15 resources resource NNS cord-309556-xv3413k1 146 16 to to IN cord-309556-xv3413k1 146 17 the the DT cord-309556-xv3413k1 146 18 community community NN cord-309556-xv3413k1 146 19 to to TO cord-309556-xv3413k1 146 20 facilitate facilitate VB cord-309556-xv3413k1 146 21 the the DT cord-309556-xv3413k1 146 22 development development NN cord-309556-xv3413k1 146 23 of of IN cord-309556-xv3413k1 146 24 new new JJ cord-309556-xv3413k1 146 25 treatment treatment NN cord-309556-xv3413k1 146 26 or or CC cord-309556-xv3413k1 146 27 prevention prevention NN cord-309556-xv3413k1 146 28 approaches approach NNS cord-309556-xv3413k1 146 29 against against IN cord-309556-xv3413k1 146 30 SARS SARS NNP cord-309556-xv3413k1 146 31 - - HYPH cord-309556-xv3413k1 146 32 CoV-2 CoV-2 NNP cord-309556-xv3413k1 146 33 / / . cord-309556-xv3413k1 147 1 COVID-19 covid-19 VB cord-309556-xv3413k1 147 2 as as RB cord-309556-xv3413k1 147 3 soon soon RB cord-309556-xv3413k1 147 4 as as IN cord-309556-xv3413k1 147 5 possible possible JJ cord-309556-xv3413k1 147 6 . . . cord-309556-xv3413k1 148 1 As as IN cord-309556-xv3413k1 148 2 a a DT cord-309556-xv3413k1 148 3 note note NN cord-309556-xv3413k1 148 4 for for IN cord-309556-xv3413k1 148 5 full full JJ cord-309556-xv3413k1 148 6 disclosure disclosure NN cord-309556-xv3413k1 148 7 , , , cord-309556-xv3413k1 148 8 SC SC NNP cord-309556-xv3413k1 148 9 is be VBZ cord-309556-xv3413k1 148 10 a a DT cord-309556-xv3413k1 148 11 co co NN cord-309556-xv3413k1 148 12 - - NN cord-309556-xv3413k1 148 13 founder founder NN cord-309556-xv3413k1 148 14 , , , cord-309556-xv3413k1 148 15 funding funding NN cord-309556-xv3413k1 148 16 recipient recipient NN cord-309556-xv3413k1 148 17 and and CC cord-309556-xv3413k1 148 18 scientific scientific JJ cord-309556-xv3413k1 148 19 advisor advisor NN cord-309556-xv3413k1 148 20 of of IN cord-309556-xv3413k1 148 21 EvolveImmune EvolveImmune NNP cord-309556-xv3413k1 148 22 Therapeutics Therapeutics NNP cord-309556-xv3413k1 148 23 , , , cord-309556-xv3413k1 148 24 which which WDT cord-309556-xv3413k1 148 25 is be VBZ cord-309556-xv3413k1 148 26 not not RB cord-309556-xv3413k1 148 27 related relate VBN cord-309556-xv3413k1 148 28 to to IN cord-309556-xv3413k1 148 29 this this DT cord-309556-xv3413k1 148 30 study study NN cord-309556-xv3413k1 148 31 . . . cord-309556-xv3413k1 149 1 c. c. NNP cord-309556-xv3413k1 149 2 DAVID DAVID NNP cord-309556-xv3413k1 149 3 gene gene NN cord-309556-xv3413k1 149 4 ontology ontology NN cord-309556-xv3413k1 149 5 and and CC cord-309556-xv3413k1 149 6 pathway pathway NN cord-309556-xv3413k1 149 7 analysis analysis NN cord-309556-xv3413k1 149 8 of of IN cord-309556-xv3413k1 149 9 Cluster cluster NN cord-309556-xv3413k1 149 10 1 1 CD cord-309556-xv3413k1 149 11 age age NN cord-309556-xv3413k1 149 12 - - HYPH cord-309556-xv3413k1 149 13 associated associate VBN cord-309556-xv3413k1 149 14 genes gene NNS cord-309556-xv3413k1 149 15 that that WDT cord-309556-xv3413k1 149 16 exhibit exhibit VBP cord-309556-xv3413k1 149 17 enriched enrich VBN cord-309556-xv3413k1 149 18 expression expression NN cord-309556-xv3413k1 149 19 in in IN cord-309556-xv3413k1 149 20 muscle muscle NN cord-309556-xv3413k1 149 21 cells cell NNS cord-309556-xv3413k1 149 22 . . . cord-309556-xv3413k1 150 1 d. d. NNP cord-309556-xv3413k1 150 2 DAVID DAVID NNP cord-309556-xv3413k1 150 3 gene gene NN cord-309556-xv3413k1 150 4 ontology ontology NN cord-309556-xv3413k1 150 5 and and CC cord-309556-xv3413k1 150 6 pathway pathway NN cord-309556-xv3413k1 150 7 analysis analysis NN cord-309556-xv3413k1 150 8 of of IN cord-309556-xv3413k1 150 9 Cluster cluster NN cord-309556-xv3413k1 150 10 2 2 CD cord-309556-xv3413k1 150 11 age age NN cord-309556-xv3413k1 150 12 - - HYPH cord-309556-xv3413k1 150 13 associated associate VBN cord-309556-xv3413k1 150 14 genes gene NNS cord-309556-xv3413k1 150 15 that that WDT cord-309556-xv3413k1 150 16 exhibit exhibit VBP cord-309556-xv3413k1 150 17 enriched enrich VBN cord-309556-xv3413k1 150 18 expression expression NN cord-309556-xv3413k1 150 19 in in IN cord-309556-xv3413k1 150 20 alveolar alveolar JJ cord-309556-xv3413k1 150 21 type type NN cord-309556-xv3413k1 150 22 2 2 CD cord-309556-xv3413k1 150 23 ( ( -LRB- cord-309556-xv3413k1 150 24 AT2 at2 NN cord-309556-xv3413k1 150 25 ) ) -RRB- cord-309556-xv3413k1 150 26 cells cell NNS cord-309556-xv3413k1 150 27 . . . cord-309556-xv3413k1 151 1 a. a. NN cord-309556-xv3413k1 152 1 Venn Venn NNP cord-309556-xv3413k1 152 2 diagram diagram NN cord-309556-xv3413k1 152 3 of of IN cord-309556-xv3413k1 152 4 the the DT cord-309556-xv3413k1 152 5 intersection intersection NN cord-309556-xv3413k1 152 6 between between IN cord-309556-xv3413k1 152 7 age age NN cord-309556-xv3413k1 152 8 - - HYPH cord-309556-xv3413k1 152 9 associated associate VBN cord-309556-xv3413k1 152 10 genes gene NNS cord-309556-xv3413k1 152 11 in in IN cord-309556-xv3413k1 152 12 human human JJ cord-309556-xv3413k1 152 13 lung lung NN cord-309556-xv3413k1 152 14 and and CC cord-309556-xv3413k1 152 15 the the DT cord-309556-xv3413k1 152 16 SARS SARS NNP cord-309556-xv3413k1 152 17 - - HYPH cord-309556-xv3413k1 152 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 152 19 : : : cord-309556-xv3413k1 152 20 Human human JJ cord-309556-xv3413k1 152 21 protein protein NN cord-309556-xv3413k1 152 22 interactome interactome NNP cord-309556-xv3413k1 153 1 ( ( -LRB- cord-309556-xv3413k1 153 2 Gordon Gordon NNP cord-309556-xv3413k1 153 3 et et NNP cord-309556-xv3413k1 153 4 al al NNP cord-309556-xv3413k1 153 5 . . NNP cord-309556-xv3413k1 153 6 , , , cord-309556-xv3413k1 153 7 2020 2020 CD cord-309556-xv3413k1 153 8 ) ) -RRB- cord-309556-xv3413k1 153 9 . . . cord-309556-xv3413k1 154 1 Of of IN cord-309556-xv3413k1 154 2 the the DT cord-309556-xv3413k1 154 3 20 20 CD cord-309556-xv3413k1 154 4 age age NN cord-309556-xv3413k1 154 5 - - HYPH cord-309556-xv3413k1 154 6 associated associate VBN cord-309556-xv3413k1 154 7 genes gene NNS cord-309556-xv3413k1 154 8 that that WDT cord-309556-xv3413k1 154 9 were be VBD cord-309556-xv3413k1 154 10 found find VBN cord-309556-xv3413k1 154 11 to to TO cord-309556-xv3413k1 154 12 also also RB cord-309556-xv3413k1 154 13 interact interact VB cord-309556-xv3413k1 154 14 with with IN cord-309556-xv3413k1 154 15 SARS SARS NNP cord-309556-xv3413k1 154 16 - - HYPH cord-309556-xv3413k1 154 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 154 18 , , , cord-309556-xv3413k1 154 19 4 4 CD cord-309556-xv3413k1 154 20 of of IN cord-309556-xv3413k1 154 21 them -PRON- PRP cord-309556-xv3413k1 154 22 increased increase VBD cord-309556-xv3413k1 154 23 in in IN cord-309556-xv3413k1 154 24 expression expression NN cord-309556-xv3413k1 154 25 with with IN cord-309556-xv3413k1 154 26 age age NN cord-309556-xv3413k1 154 27 , , , cord-309556-xv3413k1 154 28 while while IN cord-309556-xv3413k1 154 29 16 16 CD cord-309556-xv3413k1 154 30 decreased decrease VBD cord-309556-xv3413k1 154 31 with with IN cord-309556-xv3413k1 154 32 age age NN cord-309556-xv3413k1 154 33 . . . cord-309556-xv3413k1 155 1 b. b. NNP cord-309556-xv3413k1 155 2 Age Age NNP cord-309556-xv3413k1 155 3 - - HYPH cord-309556-xv3413k1 155 4 associated associate VBN cord-309556-xv3413k1 155 5 genes gene NNS cord-309556-xv3413k1 155 6 in in IN cord-309556-xv3413k1 155 7 human human JJ cord-309556-xv3413k1 155 8 lung lung NN cord-309556-xv3413k1 155 9 and and CC cord-309556-xv3413k1 155 10 their -PRON- PRP$ cord-309556-xv3413k1 155 11 interaction interaction NN cord-309556-xv3413k1 155 12 with with IN cord-309556-xv3413k1 155 13 SARS SARS NNP cord-309556-xv3413k1 155 14 - - HYPH cord-309556-xv3413k1 155 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 155 16 proteins protein NNS cord-309556-xv3413k1 155 17 , , , cord-309556-xv3413k1 155 18 where where WRB cord-309556-xv3413k1 155 19 each each DT cord-309556-xv3413k1 155 20 block block NN cord-309556-xv3413k1 155 21 contains contain VBZ cord-309556-xv3413k1 155 22 a a DT cord-309556-xv3413k1 155 23 SARS SARS NNP cord-309556-xv3413k1 155 24 - - HYPH cord-309556-xv3413k1 155 25 CoV-2 CoV-2 NNP cord-309556-xv3413k1 155 26 protein protein NN cord-309556-xv3413k1 155 27 ( ( -LRB- cord-309556-xv3413k1 155 28 underlined underline VBN cord-309556-xv3413k1 155 29 ) ) -RRB- cord-309556-xv3413k1 155 30 and and CC cord-309556-xv3413k1 155 31 its -PRON- PRP$ cord-309556-xv3413k1 155 32 interacting interact VBG cord-309556-xv3413k1 155 33 age age NN cord-309556-xv3413k1 155 34 - - HYPH cord-309556-xv3413k1 155 35 associated associate VBN cord-309556-xv3413k1 155 36 factors factor NNS cord-309556-xv3413k1 155 37 . . . cord-309556-xv3413k1 156 1 Blocks block NNS cord-309556-xv3413k1 156 2 are be VBP cord-309556-xv3413k1 156 3 colored color VBN cord-309556-xv3413k1 156 4 by by IN cord-309556-xv3413k1 156 5 the the DT cord-309556-xv3413k1 156 6 dominant dominant JJ cord-309556-xv3413k1 156 7 directionality directionality NN cord-309556-xv3413k1 156 8 of of IN cord-309556-xv3413k1 156 9 the the DT cord-309556-xv3413k1 156 10 age age NNP cord-309556-xv3413k1 156 11 association association NNP cord-309556-xv3413k1 156 12 ( ( -LRB- cord-309556-xv3413k1 156 13 orange orange NNP cord-309556-xv3413k1 156 14 , , , cord-309556-xv3413k1 156 15 decreasing decrease VBG cord-309556-xv3413k1 156 16 with with IN cord-309556-xv3413k1 156 17 age age NN cord-309556-xv3413k1 156 18 ; ; , cord-309556-xv3413k1 156 19 blue blue JJ cord-309556-xv3413k1 156 20 , , , cord-309556-xv3413k1 156 21 increasing increase VBG cord-309556-xv3413k1 156 22 with with IN cord-309556-xv3413k1 156 23 age age NN cord-309556-xv3413k1 156 24 ) ) -RRB- cord-309556-xv3413k1 156 25 . . . cord-309556-xv3413k1 157 1 Gene gene NN cord-309556-xv3413k1 157 2 targets target NNS cord-309556-xv3413k1 157 3 with with IN cord-309556-xv3413k1 157 4 already already RB cord-309556-xv3413k1 157 5 approved approve VBN cord-309556-xv3413k1 157 6 drugs drug NNS cord-309556-xv3413k1 157 7 , , , cord-309556-xv3413k1 157 8 investigational investigational JJ cord-309556-xv3413k1 157 9 new new JJ cord-309556-xv3413k1 157 10 drugs drug NNS cord-309556-xv3413k1 157 11 , , , cord-309556-xv3413k1 157 12 or or CC cord-309556-xv3413k1 157 13 preclinical preclinical JJ cord-309556-xv3413k1 157 14 molecules molecule NNS cord-309556-xv3413k1 157 15 are be VBP cord-309556-xv3413k1 157 16 additionally additionally RB cord-309556-xv3413k1 157 17 denoted denote VBN cord-309556-xv3413k1 157 18 with with IN cord-309556-xv3413k1 157 19 an an DT cord-309556-xv3413k1 157 20 asterisk asterisk NN cord-309556-xv3413k1 157 21 . . . cord-309556-xv3413k1 157 22 _SP cord-309556-xv3413k1 158 1 The the DT cord-309556-xv3413k1 158 2 Genotype Genotype NNP cord-309556-xv3413k1 158 3 - - HYPH cord-309556-xv3413k1 158 4 Tissue Tissue NNP cord-309556-xv3413k1 158 5 Expression expression NN cord-309556-xv3413k1 158 6 ( ( -LRB- cord-309556-xv3413k1 158 7 GTEx gtex NN cord-309556-xv3413k1 158 8 ) ) -RRB- cord-309556-xv3413k1 158 9 Project Project NNP cord-309556-xv3413k1 158 10 was be VBD cord-309556-xv3413k1 158 11 supported support VBN cord-309556-xv3413k1 158 12 by by IN cord-309556-xv3413k1 158 13 the the DT cord-309556-xv3413k1 158 14 Common Common NNP cord-309556-xv3413k1 158 15 Fund Fund NNP cord-309556-xv3413k1 158 16 of of IN cord-309556-xv3413k1 158 17 the the DT cord-309556-xv3413k1 158 18 Office Office NNP cord-309556-xv3413k1 158 19 of of IN cord-309556-xv3413k1 158 20 the the DT cord-309556-xv3413k1 158 21 Director Director NNP cord-309556-xv3413k1 158 22 of of IN cord-309556-xv3413k1 158 23 the the DT cord-309556-xv3413k1 158 24 National National NNP cord-309556-xv3413k1 158 25 Institutes Institutes NNPS cord-309556-xv3413k1 158 26 of of IN cord-309556-xv3413k1 158 27 Health Health NNP cord-309556-xv3413k1 158 28 , , , cord-309556-xv3413k1 158 29 and and CC cord-309556-xv3413k1 158 30 by by IN cord-309556-xv3413k1 158 31 NCI NCI NNP cord-309556-xv3413k1 158 32 , , , cord-309556-xv3413k1 158 33 NHGRI NHGRI NNP cord-309556-xv3413k1 158 34 , , , cord-309556-xv3413k1 158 35 NHLBI NHLBI NNP cord-309556-xv3413k1 158 36 , , , cord-309556-xv3413k1 158 37 NIDA NIDA NNP cord-309556-xv3413k1 158 38 , , , cord-309556-xv3413k1 158 39 NIMH NIMH NNP cord-309556-xv3413k1 158 40 , , , cord-309556-xv3413k1 158 41 and and CC cord-309556-xv3413k1 158 42 NINDS NINDS NNP cord-309556-xv3413k1 158 43 10 10 CD cord-309556-xv3413k1 158 44 , , , cord-309556-xv3413k1 158 45 11 11 CD cord-309556-xv3413k1 158 46 . . . cord-309556-xv3413k1 159 1 RNA RNA NNP cord-309556-xv3413k1 159 2 - - HYPH cord-309556-xv3413k1 159 3 seq seq NN cord-309556-xv3413k1 159 4 raw raw JJ cord-309556-xv3413k1 159 5 counts count NNS cord-309556-xv3413k1 159 6 and and CC cord-309556-xv3413k1 159 7 normalized normalize VBN cord-309556-xv3413k1 159 8 TPM TPM NNP cord-309556-xv3413k1 159 9 matrices matrix NNS cord-309556-xv3413k1 159 10 were be VBD cord-309556-xv3413k1 159 11 downloaded download VBN cord-309556-xv3413k1 159 12 from from IN cord-309556-xv3413k1 159 13 the the DT cord-309556-xv3413k1 159 14 GTEx GTEx NNP cord-309556-xv3413k1 159 15 Portal Portal NNP cord-309556-xv3413k1 159 16 ( ( -LRB- cord-309556-xv3413k1 159 17 https://gtexportal.org/home/index.html https://gtexportal.org/home/index.html ADD cord-309556-xv3413k1 159 18 ) ) -RRB- cord-309556-xv3413k1 159 19 on on IN cord-309556-xv3413k1 159 20 March March NNP cord-309556-xv3413k1 159 21 18 18 CD cord-309556-xv3413k1 159 22 , , , cord-309556-xv3413k1 159 23 2020 2020 CD cord-309556-xv3413k1 159 24 , , , cord-309556-xv3413k1 159 25 release release VB cord-309556-xv3413k1 159 26 v8 v8 NNP cord-309556-xv3413k1 159 27 . . . cord-309556-xv3413k1 160 1 All all DT cord-309556-xv3413k1 160 2 accessed access VBN cord-309556-xv3413k1 160 3 data datum NNS cord-309556-xv3413k1 160 4 used use VBN cord-309556-xv3413k1 160 5 in in IN cord-309556-xv3413k1 160 6 this this DT cord-309556-xv3413k1 160 7 study study NN cord-309556-xv3413k1 160 8 are be VBP cord-309556-xv3413k1 160 9 publicly publicly RB cord-309556-xv3413k1 160 10 available available JJ cord-309556-xv3413k1 160 11 on on IN cord-309556-xv3413k1 160 12 the the DT cord-309556-xv3413k1 160 13 web web NN cord-309556-xv3413k1 160 14 portal portal NN cord-309556-xv3413k1 160 15 and and CC cord-309556-xv3413k1 160 16 have have VBP cord-309556-xv3413k1 160 17 been be VBN cord-309556-xv3413k1 160 18 deidentified deidentifie VBN cord-309556-xv3413k1 160 19 , , , cord-309556-xv3413k1 160 20 except except IN cord-309556-xv3413k1 160 21 for for IN cord-309556-xv3413k1 160 22 patient patient JJ cord-309556-xv3413k1 160 23 age age NN cord-309556-xv3413k1 160 24 range range NN cord-309556-xv3413k1 160 25 and and CC cord-309556-xv3413k1 160 26 gender gender NN cord-309556-xv3413k1 160 27 . . . cord-309556-xv3413k1 161 1 Case case NN cord-309556-xv3413k1 161 2 - - HYPH cord-309556-xv3413k1 161 3 fatality fatality NN cord-309556-xv3413k1 161 4 rates rate NNS cord-309556-xv3413k1 161 5 in in IN cord-309556-xv3413k1 161 6 China China NNP cord-309556-xv3413k1 161 7 and and CC cord-309556-xv3413k1 161 8 Italy Italy NNP cord-309556-xv3413k1 161 9 were be VBD cord-309556-xv3413k1 161 10 from from IN cord-309556-xv3413k1 161 11 the the DT cord-309556-xv3413k1 161 12 Chinese chinese JJ cord-309556-xv3413k1 161 13 CDC CDC NNP cord-309556-xv3413k1 161 14 and and CC cord-309556-xv3413k1 161 15 Italian italian JJ cord-309556-xv3413k1 161 16 ISS ISS NNP cord-309556-xv3413k1 161 17 , , , cord-309556-xv3413k1 161 18 _SP cord-309556-xv3413k1 161 19 For for IN cord-309556-xv3413k1 161 20 visualization visualization NN cord-309556-xv3413k1 161 21 of of IN cord-309556-xv3413k1 161 22 RNA RNA NNP cord-309556-xv3413k1 161 23 - - HYPH cord-309556-xv3413k1 161 24 seq seq NNP cord-309556-xv3413k1 161 25 expression expression NN cord-309556-xv3413k1 161 26 data datum NNS cord-309556-xv3413k1 161 27 , , , cord-309556-xv3413k1 161 28 the the DT cord-309556-xv3413k1 161 29 TPM TPM NNP cord-309556-xv3413k1 161 30 values value NNS cord-309556-xv3413k1 161 31 were be VBD cord-309556-xv3413k1 161 32 log2 log2 NNS cord-309556-xv3413k1 161 33 transformed transform VBN cord-309556-xv3413k1 161 34 and and CC cord-309556-xv3413k1 161 35 plotted plot VBN cord-309556-xv3413k1 161 36 in in IN cord-309556-xv3413k1 161 37 R r NN cord-309556-xv3413k1 161 38 ( ( -LRB- cord-309556-xv3413k1 161 39 v3.6.1 v3.6.1 NNP cord-309556-xv3413k1 161 40 ) ) -RRB- cord-309556-xv3413k1 161 41 . . . cord-309556-xv3413k1 162 1 All all DT cord-309556-xv3413k1 162 2 boxplots boxplot NNS cord-309556-xv3413k1 162 3 are be VBP cord-309556-xv3413k1 162 4 Tukey Tukey NNP cord-309556-xv3413k1 162 5 boxplots boxplot NNS cord-309556-xv3413k1 162 6 , , , cord-309556-xv3413k1 162 7 with with IN cord-309556-xv3413k1 162 8 interquartile interquartile JJ cord-309556-xv3413k1 162 9 range range NN cord-309556-xv3413k1 162 10 ( ( -LRB- cord-309556-xv3413k1 162 11 IQR IQR NNP cord-309556-xv3413k1 162 12 ) ) -RRB- cord-309556-xv3413k1 162 13 boxes box NNS cord-309556-xv3413k1 162 14 and and CC cord-309556-xv3413k1 162 15 1.5 1.5 CD cord-309556-xv3413k1 162 16 × × NN cord-309556-xv3413k1 162 17 IQR IQR NNP cord-309556-xv3413k1 162 18 whiskers whisker NNS cord-309556-xv3413k1 162 19 . . . cord-309556-xv3413k1 163 1 Pairwise pairwise JJ cord-309556-xv3413k1 163 2 statistical statistical JJ cord-309556-xv3413k1 163 3 comparisons comparison NNS cord-309556-xv3413k1 163 4 in in IN cord-309556-xv3413k1 163 5 the the DT cord-309556-xv3413k1 163 6 plots plot NNS cord-309556-xv3413k1 163 7 were be VBD cord-309556-xv3413k1 163 8 assessed assess VBN cord-309556-xv3413k1 163 9 by by IN cord-309556-xv3413k1 163 10 two two CD cord-309556-xv3413k1 163 11 - - HYPH cord-309556-xv3413k1 163 12 tailed tailed JJ cord-309556-xv3413k1 163 13 Mann Mann NNP cord-309556-xv3413k1 163 14 - - HYPH cord-309556-xv3413k1 163 15 Whitney Whitney NNP cord-309556-xv3413k1 163 16 test test NN cord-309556-xv3413k1 163 17 , , , cord-309556-xv3413k1 163 18 while while IN cord-309556-xv3413k1 163 19 statistical statistical JJ cord-309556-xv3413k1 163 20 comparisons comparison NNS cord-309556-xv3413k1 163 21 across across IN cord-309556-xv3413k1 163 22 all all DT cord-309556-xv3413k1 163 23 age age NN cord-309556-xv3413k1 163 24 groups group NNS cord-309556-xv3413k1 163 25 were be VBD cord-309556-xv3413k1 163 26 performed perform VBN cord-309556-xv3413k1 163 27 by by IN cord-309556-xv3413k1 163 28 Kruskal Kruskal NNP cord-309556-xv3413k1 163 29 - - HYPH cord-309556-xv3413k1 163 30 Wallis Wallis NNP cord-309556-xv3413k1 163 31 test test NN cord-309556-xv3413k1 163 32 . . . cord-309556-xv3413k1 164 1 To to TO cord-309556-xv3413k1 164 2 identify identify VB cord-309556-xv3413k1 164 3 age age NN cord-309556-xv3413k1 164 4 - - HYPH cord-309556-xv3413k1 164 5 associated associate VBN cord-309556-xv3413k1 164 6 genes gene NNS cord-309556-xv3413k1 164 7 , , , cord-309556-xv3413k1 164 8 the the DT cord-309556-xv3413k1 164 9 raw raw JJ cord-309556-xv3413k1 164 10 counts count NNS cord-309556-xv3413k1 164 11 values value NNS cord-309556-xv3413k1 164 12 were be VBD cord-309556-xv3413k1 164 13 analyzed analyze VBN cord-309556-xv3413k1 164 14 by by IN cord-309556-xv3413k1 164 15 DESeq2 DESeq2 NNP cord-309556-xv3413k1 164 16 ( ( -LRB- cord-309556-xv3413k1 164 17 v1.24.0 v1.24.0 NNP cord-309556-xv3413k1 164 18 ) ) -RRB- cord-309556-xv3413k1 164 19 22 22 CD cord-309556-xv3413k1 164 20 , , , cord-309556-xv3413k1 164 21 using use VBG cord-309556-xv3413k1 164 22 the the DT cord-309556-xv3413k1 164 23 likelihood likelihood NN cord-309556-xv3413k1 164 24 ratio ratio NN cord-309556-xv3413k1 164 25 test test NN cord-309556-xv3413k1 164 26 ( ( -LRB- cord-309556-xv3413k1 164 27 LRT LRT NNP cord-309556-xv3413k1 164 28 ) ) -RRB- cord-309556-xv3413k1 164 29 . . . cord-309556-xv3413k1 165 1 Age age NN cord-309556-xv3413k1 165 2 - - HYPH cord-309556-xv3413k1 165 3 associated associate VBN cord-309556-xv3413k1 165 4 genes gene NNS cord-309556-xv3413k1 165 5 were be VBD cord-309556-xv3413k1 165 6 determined determine VBN cord-309556-xv3413k1 165 7 at at IN cord-309556-xv3413k1 165 8 a a DT cord-309556-xv3413k1 165 9 significance significance NN cord-309556-xv3413k1 165 10 threshold threshold NN cord-309556-xv3413k1 165 11 of of IN cord-309556-xv3413k1 165 12 adjusted adjust VBN cord-309556-xv3413k1 165 13 p p NN cord-309556-xv3413k1 165 14 < < XX cord-309556-xv3413k1 165 15 0.0001 0.0001 CD cord-309556-xv3413k1 165 16 . . . cord-309556-xv3413k1 166 1 Genes gene NNS cord-309556-xv3413k1 166 2 passing pass VBG cord-309556-xv3413k1 166 3 the the DT cord-309556-xv3413k1 166 4 significance significance NN cord-309556-xv3413k1 166 5 threshold threshold NN cord-309556-xv3413k1 166 6 were be VBD cord-309556-xv3413k1 166 7 then then RB cord-309556-xv3413k1 166 8 scaled scale VBN cord-309556-xv3413k1 166 9 to to IN cord-309556-xv3413k1 166 10 z z NNS cord-309556-xv3413k1 166 11 - - HYPH cord-309556-xv3413k1 166 12 scores score NNS cord-309556-xv3413k1 166 13 and and CC cord-309556-xv3413k1 166 14 clustered cluster VBN cord-309556-xv3413k1 166 15 using use VBG cord-309556-xv3413k1 166 16 the the DT cord-309556-xv3413k1 166 17 degPatterns degPatterns NNP cord-309556-xv3413k1 166 18 function function VB cord-309556-xv3413k1 166 19 from from IN cord-309556-xv3413k1 166 20 the the DT cord-309556-xv3413k1 166 21 R r NN cord-309556-xv3413k1 166 22 package package NN cord-309556-xv3413k1 166 23 DEGreport degreport NN cord-309556-xv3413k1 166 24 ( ( -LRB- cord-309556-xv3413k1 166 25 v1.20.0 v1.20.0 NNP cord-309556-xv3413k1 166 26 ) ) -RRB- cord-309556-xv3413k1 166 27 . . . cord-309556-xv3413k1 167 1 Gene gene NN cord-309556-xv3413k1 167 2 clusters cluster NNS cord-309556-xv3413k1 167 3 with with IN cord-309556-xv3413k1 167 4 progressive progressive JJ cord-309556-xv3413k1 167 5 and and CC cord-309556-xv3413k1 167 6 consistent consistent JJ cord-309556-xv3413k1 167 7 trends trend NNS cord-309556-xv3413k1 167 8 with with IN cord-309556-xv3413k1 167 9 age age NN cord-309556-xv3413k1 167 10 were be VBD cord-309556-xv3413k1 167 11 retained retain VBN cord-309556-xv3413k1 167 12 for for IN cord-309556-xv3413k1 167 13 downstream downstream JJ cord-309556-xv3413k1 167 14 analysis analysis NN cord-309556-xv3413k1 167 15 . . . cord-309556-xv3413k1 168 1 Gene gene NN cord-309556-xv3413k1 168 2 ontology ontology NN cord-309556-xv3413k1 168 3 and and CC cord-309556-xv3413k1 168 4 pathway pathway NN cord-309556-xv3413k1 168 5 enrichment enrichment NN cord-309556-xv3413k1 168 6 analysis analysis NN cord-309556-xv3413k1 168 7 was be VBD cord-309556-xv3413k1 168 8 performed perform VBN cord-309556-xv3413k1 168 9 using use VBG cord-309556-xv3413k1 168 10 DAVID DAVID NNP cord-309556-xv3413k1 168 11 ( ( -LRB- cord-309556-xv3413k1 168 12 v6.8 v6.8 JJ cord-309556-xv3413k1 168 13 ) ) -RRB- cord-309556-xv3413k1 168 14 70 70 CD cord-309556-xv3413k1 168 15 ( ( -LRB- cord-309556-xv3413k1 168 16 https://david.ncifcrf.gov/ https://david.ncifcrf.gov/ $ cord-309556-xv3413k1 168 17 ) ) -RRB- cord-309556-xv3413k1 168 18 , , , cord-309556-xv3413k1 168 19 separating separate VBG cord-309556-xv3413k1 168 20 the the DT cord-309556-xv3413k1 168 21 age age NN cord-309556-xv3413k1 168 22 - - HYPH cord-309556-xv3413k1 168 23 associated associate VBN cord-309556-xv3413k1 168 24 genes gene NNS cord-309556-xv3413k1 168 25 into into IN cord-309556-xv3413k1 168 26 the the DT cord-309556-xv3413k1 168 27 two two CD cord-309556-xv3413k1 168 28 clusters cluster NNS cord-309556-xv3413k1 168 29 ( ( -LRB- cord-309556-xv3413k1 168 30 increasing increase VBG cord-309556-xv3413k1 168 31 or or CC cord-309556-xv3413k1 168 32 decreasing decrease VBG cord-309556-xv3413k1 168 33 with with IN cord-309556-xv3413k1 168 34 age age NN cord-309556-xv3413k1 168 35 ) ) -RRB- cord-309556-xv3413k1 168 36 , , , cord-309556-xv3413k1 168 37 as as IN cord-309556-xv3413k1 168 38 described describe VBN cord-309556-xv3413k1 168 39 above above RB cord-309556-xv3413k1 168 40 . . . cord-309556-xv3413k1 169 1 scRNA scRNA NNP cord-309556-xv3413k1 169 2 - - HYPH cord-309556-xv3413k1 169 3 seq seq NN cord-309556-xv3413k1 169 4 data datum NNS cord-309556-xv3413k1 169 5 were be VBD cord-309556-xv3413k1 169 6 analyzed analyze VBN cord-309556-xv3413k1 169 7 in in IN cord-309556-xv3413k1 169 8 R r NN cord-309556-xv3413k1 169 9 ( ( -LRB- cord-309556-xv3413k1 169 10 v3.6.1 v3.6.1 NNP cord-309556-xv3413k1 169 11 ) ) -RRB- cord-309556-xv3413k1 169 12 using use VBG cord-309556-xv3413k1 169 13 Seurat Seurat NNP cord-309556-xv3413k1 169 14 71,72 71,72 CD cord-309556-xv3413k1 169 15 and and CC cord-309556-xv3413k1 169 16 custom custom NN cord-309556-xv3413k1 169 17 scripts script NNS cord-309556-xv3413k1 169 18 . . . cord-309556-xv3413k1 170 1 Of of IN cord-309556-xv3413k1 170 2 the the DT cord-309556-xv3413k1 170 3 1285 1285 CD cord-309556-xv3413k1 170 4 age age NN cord-309556-xv3413k1 170 5 - - HYPH cord-309556-xv3413k1 170 6 associated associate VBN cord-309556-xv3413k1 170 7 genes gene NNS cord-309556-xv3413k1 170 8 identified identify VBN cord-309556-xv3413k1 170 9 from from IN cord-309556-xv3413k1 170 10 GTEx GTEx NNP cord-309556-xv3413k1 170 11 bulk bulk JJ cord-309556-xv3413k1 170 12 transcriptomes transcriptome NNS cord-309556-xv3413k1 170 13 , , , cord-309556-xv3413k1 170 14 1049 1049 CD cord-309556-xv3413k1 170 15 genes gene NNS cord-309556-xv3413k1 170 16 were be VBD cord-309556-xv3413k1 170 17 matched match VBN cord-309556-xv3413k1 170 18 in in IN cord-309556-xv3413k1 170 19 the the DT cord-309556-xv3413k1 170 20 Tissue Tissue NNP cord-309556-xv3413k1 170 21 Stability Stability NNP cord-309556-xv3413k1 170 22 Cell Cell NNP cord-309556-xv3413k1 170 23 Atlas Atlas NNP cord-309556-xv3413k1 170 24 dataset dataset NN cord-309556-xv3413k1 170 25 and and CC cord-309556-xv3413k1 170 26 1021 1021 CD cord-309556-xv3413k1 170 27 genes gene NNS cord-309556-xv3413k1 170 28 were be VBD cord-309556-xv3413k1 170 29 matched match VBN cord-309556-xv3413k1 170 30 in in IN cord-309556-xv3413k1 170 31 the the DT cord-309556-xv3413k1 170 32 Human Human NNP cord-309556-xv3413k1 170 33 Lung Lung NNP cord-309556-xv3413k1 170 34 Cell Cell NNP cord-309556-xv3413k1 170 35 Atlas Atlas NNP cord-309556-xv3413k1 170 36 dataset dataset NN cord-309556-xv3413k1 170 37 . . . cord-309556-xv3413k1 171 1 To to TO cord-309556-xv3413k1 171 2 determine determine VB cord-309556-xv3413k1 171 3 the the DT cord-309556-xv3413k1 171 4 percentage percentage NN cord-309556-xv3413k1 171 5 of of IN cord-309556-xv3413k1 171 6 cells cell NNS cord-309556-xv3413k1 171 7 expressing express VBG cord-309556-xv3413k1 171 8 a a DT cord-309556-xv3413k1 171 9 given give VBN cord-309556-xv3413k1 171 10 gene gene NN cord-309556-xv3413k1 171 11 , , , cord-309556-xv3413k1 171 12 the the DT cord-309556-xv3413k1 171 13 expression expression NN cord-309556-xv3413k1 171 14 matrices matrix NNS cord-309556-xv3413k1 171 15 were be VBD cord-309556-xv3413k1 171 16 converted convert VBN cord-309556-xv3413k1 171 17 to to IN cord-309556-xv3413k1 171 18 binary binary JJ cord-309556-xv3413k1 171 19 matrices matrix NNS cord-309556-xv3413k1 171 20 by by IN cord-309556-xv3413k1 171 21 setting set VBG cord-309556-xv3413k1 171 22 a a DT cord-309556-xv3413k1 171 23 threshold threshold NN cord-309556-xv3413k1 171 24 of of IN cord-309556-xv3413k1 171 25 expression expression NN cord-309556-xv3413k1 171 26 > > XX cord-309556-xv3413k1 171 27 0 0 NFP cord-309556-xv3413k1 171 28 . . . cord-309556-xv3413k1 172 1 Cell cell NN cord-309556-xv3413k1 172 2 typespecific typespecific NN cord-309556-xv3413k1 172 3 expression expression NN cord-309556-xv3413k1 172 4 frequencies frequency NNS cord-309556-xv3413k1 172 5 for for IN cord-309556-xv3413k1 172 6 each each DT cord-309556-xv3413k1 172 7 gene gene NN cord-309556-xv3413k1 172 8 were be VBD cord-309556-xv3413k1 172 9 then then RB cord-309556-xv3413k1 172 10 calculated calculate VBN cord-309556-xv3413k1 172 11 using use VBG cord-309556-xv3413k1 172 12 the the DT cord-309556-xv3413k1 172 13 provided provide VBN cord-309556-xv3413k1 172 14 cell cell NN cord-309556-xv3413k1 172 15 type type NN cord-309556-xv3413k1 172 16 annotations annotation NNS cord-309556-xv3413k1 172 17 . . . cord-309556-xv3413k1 173 1 To to TO cord-309556-xv3413k1 173 2 identify identify VB cord-309556-xv3413k1 173 3 genes gene NNS cord-309556-xv3413k1 173 4 preferentially preferentially RB cord-309556-xv3413k1 173 5 expressed express VBN cord-309556-xv3413k1 173 6 in in IN cord-309556-xv3413k1 173 7 a a DT cord-309556-xv3413k1 173 8 specific specific JJ cord-309556-xv3413k1 173 9 cell cell NN cord-309556-xv3413k1 173 10 type type NN cord-309556-xv3413k1 173 11 , , , cord-309556-xv3413k1 173 12 we -PRON- PRP cord-309556-xv3413k1 173 13 further further RB cord-309556-xv3413k1 173 14 scaled scale VBD cord-309556-xv3413k1 173 15 the the DT cord-309556-xv3413k1 173 16 expression expression NN cord-309556-xv3413k1 173 17 frequencies frequency NNS cord-309556-xv3413k1 173 18 in in IN cord-309556-xv3413k1 173 19 R r NN cord-309556-xv3413k1 173 20 to to TO cord-309556-xv3413k1 173 21 obtain obtain VB cord-309556-xv3413k1 173 22 z z NN cord-309556-xv3413k1 173 23 - - HYPH cord-309556-xv3413k1 173 24 scores score NNS cord-309556-xv3413k1 173 25 . . . cord-309556-xv3413k1 174 1 Data datum NNS cord-309556-xv3413k1 174 2 were be VBD cord-309556-xv3413k1 174 3 visualized visualize VBN cord-309556-xv3413k1 174 4 in in IN cord-309556-xv3413k1 174 5 R r NN cord-309556-xv3413k1 174 6 using use VBG cord-309556-xv3413k1 174 7 the the DT cord-309556-xv3413k1 174 8 NMF NMF NNP cord-309556-xv3413k1 174 9 package package NN cord-309556-xv3413k1 174 10 73 73 CD cord-309556-xv3413k1 174 11 . . . cord-309556-xv3413k1 175 1 Where where WRB cord-309556-xv3413k1 175 2 applicable applicable JJ cord-309556-xv3413k1 175 3 , , , cord-309556-xv3413k1 175 4 gene gene NN cord-309556-xv3413k1 175 5 ontology ontology NN cord-309556-xv3413k1 175 6 analysis analysis NN cord-309556-xv3413k1 175 7 was be VBD cord-309556-xv3413k1 175 8 performed perform VBN cord-309556-xv3413k1 175 9 with with IN cord-309556-xv3413k1 175 10 DAVID DAVID NNP cord-309556-xv3413k1 175 11 ( ( -LRB- cord-309556-xv3413k1 175 12 v6.8 v6.8 JJ cord-309556-xv3413k1 175 13 ) ) -RRB- cord-309556-xv3413k1 175 14 70 70 CD cord-309556-xv3413k1 175 15 , , , cord-309556-xv3413k1 175 16 using use VBG cord-309556-xv3413k1 175 17 genes gene NNS cord-309556-xv3413k1 175 18 with with IN cord-309556-xv3413k1 175 19 z z NN cord-309556-xv3413k1 175 20 - - HYPH cord-309556-xv3413k1 175 21 score score NN cord-309556-xv3413k1 175 22 > > XX cord-309556-xv3413k1 175 23 2 2 CD cord-309556-xv3413k1 175 24 in in IN cord-309556-xv3413k1 175 25 the the DT cord-309556-xv3413k1 175 26 cell cell NN cord-309556-xv3413k1 175 27 type type NN cord-309556-xv3413k1 175 28 of of IN cord-309556-xv3413k1 175 29 interest interest NN cord-309556-xv3413k1 175 30 for for IN cord-309556-xv3413k1 175 31 analysis analysis NN cord-309556-xv3413k1 175 32 . . . cord-309556-xv3413k1 176 1 To to TO cord-309556-xv3413k1 176 2 infer infer VB cord-309556-xv3413k1 176 3 the the DT cord-309556-xv3413k1 176 4 cellular cellular JJ cord-309556-xv3413k1 176 5 composition composition NN cord-309556-xv3413k1 176 6 of of IN cord-309556-xv3413k1 176 7 each each DT cord-309556-xv3413k1 176 8 lung lung NN cord-309556-xv3413k1 176 9 sample sample NN cord-309556-xv3413k1 176 10 , , , cord-309556-xv3413k1 176 11 we -PRON- PRP cord-309556-xv3413k1 176 12 analyzed analyze VBD cord-309556-xv3413k1 176 13 the the DT cord-309556-xv3413k1 176 14 TPM TPM NNP cord-309556-xv3413k1 176 15 expression expression NN cord-309556-xv3413k1 176 16 matrices matrix NNS cord-309556-xv3413k1 176 17 using use VBG cord-309556-xv3413k1 176 18 the the DT cord-309556-xv3413k1 176 19 xCell xCell NNP cord-309556-xv3413k1 176 20 algorithm algorithm NN cord-309556-xv3413k1 176 21 45 45 CD cord-309556-xv3413k1 176 22 . . . cord-309556-xv3413k1 177 1 The the DT cord-309556-xv3413k1 177 2 resultant resultant JJ cord-309556-xv3413k1 177 3 cell cell NN cord-309556-xv3413k1 177 4 type type NN cord-309556-xv3413k1 177 5 enrichment enrichment NN cord-309556-xv3413k1 177 6 tables table NNS cord-309556-xv3413k1 177 7 were be VBD cord-309556-xv3413k1 177 8 analyzed analyze VBN cord-309556-xv3413k1 177 9 in in IN cord-309556-xv3413k1 177 10 R. R. NNP cord-309556-xv3413k1 178 1 For for IN cord-309556-xv3413k1 178 2 data datum NNS cord-309556-xv3413k1 178 3 visualization visualization NN cord-309556-xv3413k1 178 4 , , , cord-309556-xv3413k1 178 5 cell cell NN cord-309556-xv3413k1 178 6 type type NN cord-309556-xv3413k1 178 7 enrichment enrichment NN cord-309556-xv3413k1 178 8 scores score NNS cord-309556-xv3413k1 178 9 were be VBD cord-309556-xv3413k1 178 10 scaled scale VBN cord-309556-xv3413k1 178 11 to to IN cord-309556-xv3413k1 178 12 z z NNS cord-309556-xv3413k1 178 13 - - HYPH cord-309556-xv3413k1 178 14 scores score NNS cord-309556-xv3413k1 178 15 , , , cord-309556-xv3413k1 178 16 and and CC cord-309556-xv3413k1 178 17 the the DT cord-309556-xv3413k1 178 18 median median JJ cord-309556-xv3413k1 178 19 zscore zscore NN cord-309556-xv3413k1 178 20 for for IN cord-309556-xv3413k1 178 21 each each DT cord-309556-xv3413k1 178 22 age age NN cord-309556-xv3413k1 178 23 group group NN cord-309556-xv3413k1 178 24 was be VBD cord-309556-xv3413k1 178 25 expressed express VBN cord-309556-xv3413k1 178 26 as as IN cord-309556-xv3413k1 178 27 a a DT cord-309556-xv3413k1 178 28 heatmap heatmap NN cord-309556-xv3413k1 178 29 , , , cord-309556-xv3413k1 178 30 using use VBG cord-309556-xv3413k1 178 31 the the DT cord-309556-xv3413k1 178 32 superheat superheat NN cord-309556-xv3413k1 178 33 package package NN cord-309556-xv3413k1 178 34 74 74 CD cord-309556-xv3413k1 178 35 . . . cord-309556-xv3413k1 179 1 Ageassociation Ageassociation NNP cord-309556-xv3413k1 179 2 was be VBD cord-309556-xv3413k1 179 3 assessed assess VBN cord-309556-xv3413k1 179 4 across across IN cord-309556-xv3413k1 179 5 all all DT cord-309556-xv3413k1 179 6 age age NN cord-309556-xv3413k1 179 7 groups group NNS cord-309556-xv3413k1 179 8 by by IN cord-309556-xv3413k1 179 9 Kruskal Kruskal NNP cord-309556-xv3413k1 179 10 - - HYPH cord-309556-xv3413k1 179 11 Wallis Wallis NNP cord-309556-xv3413k1 179 12 test test NN cord-309556-xv3413k1 179 13 . . . cord-309556-xv3413k1 180 1 To to TO cord-309556-xv3413k1 180 2 assess assess VB cord-309556-xv3413k1 180 3 whether whether IN cord-309556-xv3413k1 180 4 any any DT cord-309556-xv3413k1 180 5 age age NN cord-309556-xv3413k1 180 6 - - HYPH cord-309556-xv3413k1 180 7 associated associate VBN cord-309556-xv3413k1 180 8 genes gene NNS cord-309556-xv3413k1 180 9 affect affect VBP cord-309556-xv3413k1 180 10 host host NN cord-309556-xv3413k1 180 11 responses response NNS cord-309556-xv3413k1 180 12 to to IN cord-309556-xv3413k1 180 13 SARS SARS NNP cord-309556-xv3413k1 180 14 - - HYPH cord-309556-xv3413k1 180 15 CoV CoV NNP cord-309556-xv3413k1 180 16 ( ( -LRB- cord-309556-xv3413k1 180 17 a a DT cord-309556-xv3413k1 180 18 coronavirus coronavirus NN cord-309556-xv3413k1 180 19 related relate VBN cord-309556-xv3413k1 180 20 to to IN cord-309556-xv3413k1 180 21 SARS SARS NNP cord-309556-xv3413k1 180 22 - - HYPH cord-309556-xv3413k1 180 23 CoV-2 CoV-2 NNP cord-309556-xv3413k1 180 24 ) ) -RRB- cord-309556-xv3413k1 180 25 , , , cord-309556-xv3413k1 180 26 we -PRON- PRP cord-309556-xv3413k1 180 27 analyzed analyze VBD cord-309556-xv3413k1 180 28 the the DT cord-309556-xv3413k1 180 29 data datum NNS cord-309556-xv3413k1 180 30 from from IN cord-309556-xv3413k1 180 31 a a DT cord-309556-xv3413k1 180 32 published publish VBN cord-309556-xv3413k1 180 33 siRNA siRNA NNP cord-309556-xv3413k1 180 34 screen screen NN cord-309556-xv3413k1 180 35 of of IN cord-309556-xv3413k1 180 36 host host NN cord-309556-xv3413k1 180 37 factors factor NNS cord-309556-xv3413k1 180 38 influencing influence VBG cord-309556-xv3413k1 180 39 SARS SARS NNP cord-309556-xv3413k1 180 40 - - HYPH cord-309556-xv3413k1 180 41 CoV CoV NNP cord-309556-xv3413k1 180 42 63 63 CD cord-309556-xv3413k1 181 1 ( ( -LRB- cord-309556-xv3413k1 181 2 Data datum NNS cord-309556-xv3413k1 181 3 Set Set VBD cord-309556-xv3413k1 181 4 S1 S1 NNP cord-309556-xv3413k1 181 5 in in IN cord-309556-xv3413k1 181 6 the the DT cord-309556-xv3413k1 181 7 publication publication NN cord-309556-xv3413k1 181 8 ; ; : cord-309556-xv3413k1 181 9 accessed access VBN cord-309556-xv3413k1 181 10 on on IN cord-309556-xv3413k1 181 11 March March NNP cord-309556-xv3413k1 181 12 20 20 CD cord-309556-xv3413k1 181 13 , , , cord-309556-xv3413k1 181 14 2020 2020 CD cord-309556-xv3413k1 181 15 ) ) -RRB- cord-309556-xv3413k1 181 16 . . . cord-309556-xv3413k1 182 1 For for IN cord-309556-xv3413k1 182 2 data datum NNS cord-309556-xv3413k1 182 3 visualization visualization NN cord-309556-xv3413k1 182 4 , , , cord-309556-xv3413k1 182 5 each each DT cord-309556-xv3413k1 182 6 point point NN cord-309556-xv3413k1 182 7 corresponding correspond VBG cord-309556-xv3413k1 182 8 to to IN cord-309556-xv3413k1 182 9 a a DT cord-309556-xv3413k1 182 10 target target NN cord-309556-xv3413k1 182 11 gene gene NN cord-309556-xv3413k1 182 12 was be VBD cord-309556-xv3413k1 182 13 size size NN cord-309556-xv3413k1 182 14 - - HYPH cord-309556-xv3413k1 182 15 scaled scale VBN cord-309556-xv3413k1 182 16 and and CC cord-309556-xv3413k1 182 17 color color NN cord-309556-xv3413k1 182 18 - - HYPH cord-309556-xv3413k1 182 19 coded code VBN cord-309556-xv3413k1 182 20 according accord VBG cord-309556-xv3413k1 182 21 to to IN cord-309556-xv3413k1 182 22 the the DT cord-309556-xv3413k1 182 23 age age NN cord-309556-xv3413k1 182 24 - - HYPH cord-309556-xv3413k1 182 25 association association NN cord-309556-xv3413k1 182 26 statistical statistical JJ cord-309556-xv3413k1 182 27 analyses analysis NNS cord-309556-xv3413k1 182 28 described describe VBN cord-309556-xv3413k1 182 29 above above RB cord-309556-xv3413k1 182 30 . . . cord-309556-xv3413k1 183 1 To to TO cord-309556-xv3413k1 183 2 assess assess VB cord-309556-xv3413k1 183 3 whether whether IN cord-309556-xv3413k1 183 4 any any DT cord-309556-xv3413k1 183 5 lung lung NN cord-309556-xv3413k1 183 6 age age NN cord-309556-xv3413k1 183 7 - - HYPH cord-309556-xv3413k1 183 8 associated associate VBN cord-309556-xv3413k1 183 9 genes gene NNS cord-309556-xv3413k1 183 10 encode encode VBP cord-309556-xv3413k1 183 11 proteins protein NNS cord-309556-xv3413k1 183 12 that that WDT cord-309556-xv3413k1 183 13 interact interact VBP cord-309556-xv3413k1 183 14 with with IN cord-309556-xv3413k1 183 15 the the DT cord-309556-xv3413k1 183 16 SARS SARS NNP cord-309556-xv3413k1 183 17 - - HYPH cord-309556-xv3413k1 183 18 CoV-2 CoV-2 NNP cord-309556-xv3413k1 183 19 proteome proteome NN cord-309556-xv3413k1 183 20 , , , cord-309556-xv3413k1 183 21 we -PRON- PRP cord-309556-xv3413k1 183 22 compiled compile VBD cord-309556-xv3413k1 183 23 the the DT cord-309556-xv3413k1 183 24 data datum NNS cord-309556-xv3413k1 183 25 from from IN cord-309556-xv3413k1 183 26 a a DT cord-309556-xv3413k1 183 27 preprint preprint NN cord-309556-xv3413k1 183 28 manuscript manuscript NN cord-309556-xv3413k1 183 29 detailing detail VBG cord-309556-xv3413k1 183 30 the the DT cord-309556-xv3413k1 183 31 human human JJ cord-309556-xv3413k1 183 32 host host NN cord-309556-xv3413k1 183 33 factors factor NNS cord-309556-xv3413k1 183 34 that that WDT cord-309556-xv3413k1 183 35 interact interact VBP cord-309556-xv3413k1 183 36 with with IN cord-309556-xv3413k1 183 37 27 27 CD cord-309556-xv3413k1 183 38 different different JJ cord-309556-xv3413k1 183 39 proteins protein NNS cord-309556-xv3413k1 183 40 in in IN cord-309556-xv3413k1 183 41 the the DT cord-309556-xv3413k1 183 42 SARS SARS NNP cord-309556-xv3413k1 183 43 - - HYPH cord-309556-xv3413k1 183 44 CoV-2 CoV-2 NNP cord-309556-xv3413k1 183 45 proteome proteome NN cord-309556-xv3413k1 183 46 64 64 CD cord-309556-xv3413k1 183 47 ( ( -LRB- cord-309556-xv3413k1 183 48 accessed access VBN cord-309556-xv3413k1 183 49 on on IN cord-309556-xv3413k1 183 50 March March NNP cord-309556-xv3413k1 183 51 23 23 CD cord-309556-xv3413k1 183 52 , , , cord-309556-xv3413k1 183 53 2020 2020 CD cord-309556-xv3413k1 183 54 ) ) -RRB- cord-309556-xv3413k1 183 55 . . . cord-309556-xv3413k1 184 1 To to TO cord-309556-xv3413k1 184 2 assess assess VB cord-309556-xv3413k1 184 3 whether whether IN cord-309556-xv3413k1 184 4 the the DT cord-309556-xv3413k1 184 5 expression expression NN cord-309556-xv3413k1 184 6 of of IN cord-309556-xv3413k1 184 7 lung lung NN cord-309556-xv3413k1 184 8 age age NN cord-309556-xv3413k1 184 9 - - HYPH cord-309556-xv3413k1 184 10 associated associate VBN cord-309556-xv3413k1 184 11 genes gene NNS cord-309556-xv3413k1 184 12 is be VBZ cord-309556-xv3413k1 184 13 influenced influence VBN cord-309556-xv3413k1 184 14 by by IN cord-309556-xv3413k1 184 15 SARS SARS NNP cord-309556-xv3413k1 184 16 - - HYPH cord-309556-xv3413k1 184 17 CoV-2 CoV-2 NNP cord-309556-xv3413k1 184 18 infection infection NN cord-309556-xv3413k1 184 19 , , , cord-309556-xv3413k1 184 20 we -PRON- PRP cord-309556-xv3413k1 184 21 utilized utilize VBD cord-309556-xv3413k1 184 22 the the DT cord-309556-xv3413k1 184 23 data datum NNS cord-309556-xv3413k1 184 24 from from IN cord-309556-xv3413k1 184 25 a a DT cord-309556-xv3413k1 184 26 preprint preprint NN cord-309556-xv3413k1 184 27 manuscript manuscript NN cord-309556-xv3413k1 184 28 detailing detail VBG cord-309556-xv3413k1 184 29 the the DT cord-309556-xv3413k1 184 30 transcriptional transcriptional JJ cord-309556-xv3413k1 184 31 response response NN cord-309556-xv3413k1 184 32 to to IN cord-309556-xv3413k1 184 33 SARS SARS NNP cord-309556-xv3413k1 184 34 - - HYPH cord-309556-xv3413k1 184 35 CoV-2 CoV-2 NNP cord-309556-xv3413k1 184 36 infection infection NN cord-309556-xv3413k1 184 37 68 68 CD cord-309556-xv3413k1 184 38 , , , cord-309556-xv3413k1 184 39 from from IN cord-309556-xv3413k1 184 40 the the DT cord-309556-xv3413k1 184 41 Gene Gene NNP cord-309556-xv3413k1 184 42 Expression Expression NNP cord-309556-xv3413k1 184 43 Omnibus Omnibus NNP cord-309556-xv3413k1 184 44 ( ( -LRB- cord-309556-xv3413k1 184 45 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE147507 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse147507 NN cord-309556-xv3413k1 184 46 ) ) -RRB- cord-309556-xv3413k1 184 47 ( ( -LRB- cord-309556-xv3413k1 184 48 accessed access VBN cord-309556-xv3413k1 184 49 on on IN cord-309556-xv3413k1 184 50 April April NNP cord-309556-xv3413k1 184 51 13 13 CD cord-309556-xv3413k1 184 52 , , , cord-309556-xv3413k1 184 53 2020 2020 CD cord-309556-xv3413k1 184 54 ) ) -RRB- cord-309556-xv3413k1 184 55 . . . cord-309556-xv3413k1 185 1 Differentially differentially RB cord-309556-xv3413k1 185 2 expressed express VBN cord-309556-xv3413k1 185 3 genes gene NNS cord-309556-xv3413k1 185 4 were be VBD cord-309556-xv3413k1 185 5 determined determine VBN cord-309556-xv3413k1 185 6 using use VBG cord-309556-xv3413k1 185 7 the the DT cord-309556-xv3413k1 185 8 Wald Wald NNP cord-309556-xv3413k1 185 9 test test NN cord-309556-xv3413k1 185 10 in in IN cord-309556-xv3413k1 185 11 DESeq2 DESeq2 NNP cord-309556-xv3413k1 185 12 ( ( -LRB- cord-309556-xv3413k1 185 13 v1.24.0 v1.24.0 NN cord-309556-xv3413k1 185 14 ) ) -RRB- cord-309556-xv3413k1 185 15 22 22 CD cord-309556-xv3413k1 185 16 comparing compare VBG cord-309556-xv3413k1 185 17 SARS SARS NNP cord-309556-xv3413k1 185 18 - - HYPH cord-309556-xv3413k1 185 19 CoV-2 CoV-2 NNP cord-309556-xv3413k1 185 20 infected infected JJ cord-309556-xv3413k1 185 21 cells cell NNS cord-309556-xv3413k1 185 22 to to IN cord-309556-xv3413k1 185 23 batch batch VB cord-309556-xv3413k1 185 24 - - HYPH cord-309556-xv3413k1 185 25 matched match VBN cord-309556-xv3413k1 185 26 mock mock JJ cord-309556-xv3413k1 185 27 controls control NNS cord-309556-xv3413k1 185 28 , , , cord-309556-xv3413k1 185 29 with with IN cord-309556-xv3413k1 185 30 a a DT cord-309556-xv3413k1 185 31 significance significance NN cord-309556-xv3413k1 185 32 threshold threshold NN cord-309556-xv3413k1 185 33 of of IN cord-309556-xv3413k1 185 34 adjusted adjust VBN cord-309556-xv3413k1 185 35 p p NN cord-309556-xv3413k1 185 36 < < XX cord-309556-xv3413k1 185 37 0.05 0.05 CD cord-309556-xv3413k1 185 38 . . . cord-309556-xv3413k1 186 1 Of of IN cord-309556-xv3413k1 186 2 the the DT cord-309556-xv3413k1 186 3 1285 1285 CD cord-309556-xv3413k1 186 4 age age NN cord-309556-xv3413k1 186 5 - - HYPH cord-309556-xv3413k1 186 6 associated associate VBN cord-309556-xv3413k1 186 7 genes gene NNS cord-309556-xv3413k1 186 8 , , , cord-309556-xv3413k1 186 9 988 988 CD cord-309556-xv3413k1 186 10 genes gene NNS cord-309556-xv3413k1 186 11 were be VBD cord-309556-xv3413k1 186 12 matched match VBN cord-309556-xv3413k1 186 13 to to IN cord-309556-xv3413k1 186 14 the the DT cord-309556-xv3413k1 186 15 RNA RNA NNP cord-309556-xv3413k1 186 16 - - HYPH cord-309556-xv3413k1 186 17 seq seq NN cord-309556-xv3413k1 186 18 dataset dataset NN cord-309556-xv3413k1 186 19 . . . cord-309556-xv3413k1 187 1 Statistical statistical JJ cord-309556-xv3413k1 187 2 significance significance NN cord-309556-xv3413k1 187 3 of of IN cord-309556-xv3413k1 187 4 overlaps overlap NNS cord-309556-xv3413k1 187 5 between between IN cord-309556-xv3413k1 187 6 the the DT cord-309556-xv3413k1 187 7 gene gene NN cord-309556-xv3413k1 187 8 sets set NNS cord-309556-xv3413k1 187 9 was be VBD cord-309556-xv3413k1 187 10 assessed assess VBN cord-309556-xv3413k1 187 11 by by IN cord-309556-xv3413k1 187 12 hypergeometric hypergeometric JJ cord-309556-xv3413k1 187 13 test test NN cord-309556-xv3413k1 187 14 , , , cord-309556-xv3413k1 187 15 assuming assume VBG cord-309556-xv3413k1 187 16 21,797 21,797 CD cord-309556-xv3413k1 187 17 total total JJ cord-309556-xv3413k1 187 18 genes gene NNS cord-309556-xv3413k1 187 19 as as IN cord-309556-xv3413k1 187 20 annotated annotate VBN cord-309556-xv3413k1 187 21 in in IN cord-309556-xv3413k1 187 22 the the DT cord-309556-xv3413k1 187 23 RNA RNA NNP cord-309556-xv3413k1 187 24 - - HYPH cord-309556-xv3413k1 187 25 seq seq NN cord-309556-xv3413k1 187 26 dataset dataset NN cord-309556-xv3413k1 187 27 and and CC cord-309556-xv3413k1 187 28 988 988 CD cord-309556-xv3413k1 187 29 age age NN cord-309556-xv3413k1 187 30 - - HYPH cord-309556-xv3413k1 187 31 associated associate VBN cord-309556-xv3413k1 187 32 genes gene NNS cord-309556-xv3413k1 187 33 . . . cord-309556-xv3413k1 188 1 Statistical statistical JJ cord-309556-xv3413k1 188 2 significance significance NN cord-309556-xv3413k1 188 3 of of IN cord-309556-xv3413k1 188 4 the the DT cord-309556-xv3413k1 188 5 association association NN cord-309556-xv3413k1 188 6 between between IN cord-309556-xv3413k1 188 7 the the DT cord-309556-xv3413k1 188 8 directionality directionality NN cord-309556-xv3413k1 188 9 of of IN cord-309556-xv3413k1 188 10 SARS SARS NNP cord-309556-xv3413k1 188 11 - - HYPH cord-309556-xv3413k1 188 12 CoV-2 CoV-2 NNP cord-309556-xv3413k1 188 13 regulation regulation NN cord-309556-xv3413k1 188 14 and and CC cord-309556-xv3413k1 188 15 the the DT cord-309556-xv3413k1 188 16 directionality directionality NN cord-309556-xv3413k1 188 17 of of IN cord-309556-xv3413k1 188 18 age age NN cord-309556-xv3413k1 188 19 - - HYPH cord-309556-xv3413k1 188 20 association association NN cord-309556-xv3413k1 188 21 was be VBD cord-309556-xv3413k1 188 22 assessed assess VBN cord-309556-xv3413k1 188 23 by by IN cord-309556-xv3413k1 188 24 two two CD cord-309556-xv3413k1 188 25 - - HYPH cord-309556-xv3413k1 188 26 tailed tailed JJ cord-309556-xv3413k1 188 27 Fischer Fischer NNP cord-309556-xv3413k1 188 28 's 's POS cord-309556-xv3413k1 188 29 exact exact JJ cord-309556-xv3413k1 188 30 test test NN cord-309556-xv3413k1 188 31 . . . cord-309556-xv3413k1 189 1 Gene gene NN cord-309556-xv3413k1 189 2 ontology ontology NN cord-309556-xv3413k1 189 3 and and CC cord-309556-xv3413k1 189 4 pathway pathway NN cord-309556-xv3413k1 189 5 enrichment enrichment NN cord-309556-xv3413k1 189 6 analysis analysis NN cord-309556-xv3413k1 189 7 was be VBD cord-309556-xv3413k1 189 8 performed perform VBN cord-309556-xv3413k1 189 9 using use VBG cord-309556-xv3413k1 189 10 DAVID DAVID NNP cord-309556-xv3413k1 189 11 ( ( -LRB- cord-309556-xv3413k1 189 12 v6.8 v6.8 JJ cord-309556-xv3413k1 189 13 ) ) -RRB- cord-309556-xv3413k1 189 14 70 70 CD cord-309556-xv3413k1 189 15 ( ( -LRB- cord-309556-xv3413k1 189 16 https://david.ncifcrf.gov/ https://david.ncifcrf.gov/ NFP cord-309556-xv3413k1 189 17 ) ) -RRB- cord-309556-xv3413k1 189 18 . . . cord-309556-xv3413k1 190 1 Comprehensive comprehensive JJ cord-309556-xv3413k1 190 2 information information NN cord-309556-xv3413k1 190 3 on on IN cord-309556-xv3413k1 190 4 the the DT cord-309556-xv3413k1 190 5 statistical statistical JJ cord-309556-xv3413k1 190 6 analyses analysis NNS cord-309556-xv3413k1 190 7 used use VBN cord-309556-xv3413k1 190 8 are be VBP cord-309556-xv3413k1 190 9 included include VBN cord-309556-xv3413k1 190 10 in in IN cord-309556-xv3413k1 190 11 various various JJ cord-309556-xv3413k1 190 12 places place NNS cord-309556-xv3413k1 190 13 , , , cord-309556-xv3413k1 190 14 including include VBG cord-309556-xv3413k1 190 15 the the DT cord-309556-xv3413k1 190 16 figures figure NNS cord-309556-xv3413k1 190 17 , , , cord-309556-xv3413k1 190 18 figure figure NN cord-309556-xv3413k1 190 19 legends legend NNS cord-309556-xv3413k1 190 20 and and CC cord-309556-xv3413k1 190 21 results result NNS cord-309556-xv3413k1 190 22 , , , cord-309556-xv3413k1 190 23 where where WRB cord-309556-xv3413k1 190 24 the the DT cord-309556-xv3413k1 190 25 methods method NNS cord-309556-xv3413k1 190 26 , , , cord-309556-xv3413k1 190 27 significance significance NN cord-309556-xv3413k1 190 28 , , , cord-309556-xv3413k1 190 29 p p NN cord-309556-xv3413k1 190 30 - - HYPH cord-309556-xv3413k1 190 31 values value NNS cord-309556-xv3413k1 190 32 and/or and/or CC cord-309556-xv3413k1 190 33 tails tail NNS cord-309556-xv3413k1 190 34 are be VBP cord-309556-xv3413k1 190 35 described describe VBN cord-309556-xv3413k1 190 36 . . . cord-309556-xv3413k1 191 1 All all DT cord-309556-xv3413k1 191 2 error error NN cord-309556-xv3413k1 191 3 bars bar NNS cord-309556-xv3413k1 191 4 have have VBP cord-309556-xv3413k1 191 5 been be VBN cord-309556-xv3413k1 191 6 defined define VBN cord-309556-xv3413k1 191 7 in in IN cord-309556-xv3413k1 191 8 the the DT cord-309556-xv3413k1 191 9 figure figure NN cord-309556-xv3413k1 191 10 legends legend NNS cord-309556-xv3413k1 191 11 or or CC cord-309556-xv3413k1 191 12 methods method NNS cord-309556-xv3413k1 191 13 . . . cord-309556-xv3413k1 192 1 Codes code NNS cord-309556-xv3413k1 192 2 used use VBN cord-309556-xv3413k1 192 3 for for IN cord-309556-xv3413k1 192 4 data datum NNS cord-309556-xv3413k1 192 5 analysis analysis NN cord-309556-xv3413k1 192 6 or or CC cord-309556-xv3413k1 192 7 generation generation NN cord-309556-xv3413k1 192 8 of of IN cord-309556-xv3413k1 192 9 the the DT cord-309556-xv3413k1 192 10 figures figure NNS cord-309556-xv3413k1 192 11 related relate VBN cord-309556-xv3413k1 192 12 to to IN cord-309556-xv3413k1 192 13 this this DT cord-309556-xv3413k1 192 14 study study NN cord-309556-xv3413k1 192 15 are be VBP cord-309556-xv3413k1 192 16 available available JJ cord-309556-xv3413k1 192 17 upon upon IN cord-309556-xv3413k1 192 18 request request NN cord-309556-xv3413k1 192 19 to to IN cord-309556-xv3413k1 192 20 the the DT cord-309556-xv3413k1 192 21 corresponding correspond VBG cord-309556-xv3413k1 192 22 author author NN cord-309556-xv3413k1 192 23 and and CC cord-309556-xv3413k1 192 24 will will MD cord-309556-xv3413k1 192 25 be be VB cord-309556-xv3413k1 192 26 deposited deposit VBN cord-309556-xv3413k1 192 27 to to IN cord-309556-xv3413k1 192 28 GitHub GitHub NNP cord-309556-xv3413k1 192 29 upon upon IN cord-309556-xv3413k1 192 30 publication publication NN cord-309556-xv3413k1 192 31 for for IN cord-309556-xv3413k1 192 32 free free JJ cord-309556-xv3413k1 192 33 public public JJ cord-309556-xv3413k1 192 34 access access NN cord-309556-xv3413k1 192 35 . . . cord-309556-xv3413k1 193 1 All all DT cord-309556-xv3413k1 193 2 relevant relevant JJ cord-309556-xv3413k1 193 3 processed process VBN cord-309556-xv3413k1 193 4 data datum NNS cord-309556-xv3413k1 193 5 generated generate VBN cord-309556-xv3413k1 193 6 during during IN cord-309556-xv3413k1 193 7 this this DT cord-309556-xv3413k1 193 8 study study NN cord-309556-xv3413k1 193 9 are be VBP cord-309556-xv3413k1 193 10 included include VBN cord-309556-xv3413k1 193 11 in in IN cord-309556-xv3413k1 193 12 this this DT cord-309556-xv3413k1 193 13 article article NN cord-309556-xv3413k1 193 14 and and CC cord-309556-xv3413k1 193 15 its -PRON- PRP$ cord-309556-xv3413k1 193 16 supplementary supplementary JJ cord-309556-xv3413k1 193 17 information information NN cord-309556-xv3413k1 193 18 files file NNS cord-309556-xv3413k1 193 19 . . . cord-309556-xv3413k1 194 1 Raw raw JJ cord-309556-xv3413k1 194 2 data datum NNS cord-309556-xv3413k1 194 3 are be VBP cord-309556-xv3413k1 194 4 from from IN cord-309556-xv3413k1 194 5 various various JJ cord-309556-xv3413k1 194 6 sources source NNS cord-309556-xv3413k1 194 7 as as IN cord-309556-xv3413k1 194 8 described describe VBN cord-309556-xv3413k1 194 9 above above RB cord-309556-xv3413k1 194 10 . . . cord-309556-xv3413k1 195 1 All all DT cord-309556-xv3413k1 195 2 data datum NNS cord-309556-xv3413k1 195 3 and and CC cord-309556-xv3413k1 195 4 resources resource NNS cord-309556-xv3413k1 195 5 related relate VBN cord-309556-xv3413k1 195 6 to to IN cord-309556-xv3413k1 195 7 this this DT cord-309556-xv3413k1 195 8 study study NN cord-309556-xv3413k1 195 9 are be VBP cord-309556-xv3413k1 195 10 freely freely RB cord-309556-xv3413k1 195 11 available available JJ cord-309556-xv3413k1 195 12 upon upon IN cord-309556-xv3413k1 195 13 request request NN cord-309556-xv3413k1 195 14 to to IN cord-309556-xv3413k1 195 15 the the DT cord-309556-xv3413k1 195 16 corresponding correspond VBG cord-309556-xv3413k1 195 17 author author NN cord-309556-xv3413k1 195 18 . . . cord-309556-xv3413k1 196 1 Tables table NNS cord-309556-xv3413k1 196 2 _SP cord-309556-xv3413k1 196 3 Table table NN cord-309556-xv3413k1 196 4 S1 s1 NN cord-309556-xv3413k1 196 5 : : : cord-309556-xv3413k1 196 6 Demographics demographic NNS cord-309556-xv3413k1 196 7 of of IN cord-309556-xv3413k1 196 8 donors donor NNS cord-309556-xv3413k1 196 9 for for IN cord-309556-xv3413k1 196 10 GTEx gtex NN cord-309556-xv3413k1 196 11 lung lung NN cord-309556-xv3413k1 196 12 samples sample NNS cord-309556-xv3413k1 196 13 . . . cord-309556-xv3413k1 197 1 ( ( -LRB- cord-309556-xv3413k1 197 2 Gordon Gordon NNP cord-309556-xv3413k1 197 3 et et NNP cord-309556-xv3413k1 197 4 al al NNP cord-309556-xv3413k1 197 5 . . NNP cord-309556-xv3413k1 197 6 , , , cord-309556-xv3413k1 197 7 2020 2020 CD cord-309556-xv3413k1 197 8 ) ) -RRB- cord-309556-xv3413k1 197 9 with with IN cord-309556-xv3413k1 197 10 age age NN cord-309556-xv3413k1 197 11 - - HYPH cord-309556-xv3413k1 197 12 association association NN cord-309556-xv3413k1 197 13 statistics statistic NNS cord-309556-xv3413k1 197 14 from from IN cord-309556-xv3413k1 197 15 this this DT cord-309556-xv3413k1 197 16 study study NN cord-309556-xv3413k1 197 17 . . . cord-309556-xv3413k1 198 1 Table table NN cord-309556-xv3413k1 198 2 S22 S22 NNP cord-309556-xv3413k1 198 3 : : : cord-309556-xv3413k1 199 1 Differential differential JJ cord-309556-xv3413k1 199 2 expression expression NN cord-309556-xv3413k1 199 3 analysis analysis NN cord-309556-xv3413k1 199 4 in in IN cord-309556-xv3413k1 199 5 A549 a549 JJ cord-309556-xv3413k1 199 6 cells cell NNS cord-309556-xv3413k1 199 7 , , , cord-309556-xv3413k1 199 8 infected infect VBN cord-309556-xv3413k1 199 9 with with IN cord-309556-xv3413k1 199 10 SARS SARS NNP cord-309556-xv3413k1 199 11 - - HYPH cord-309556-xv3413k1 199 12 CoV-2 CoV-2 NNP cord-309556-xv3413k1 199 13 vs vs IN cord-309556-xv3413k1 199 14 mock mock JJ cord-309556-xv3413k1 199 15 control control NN cord-309556-xv3413k1 199 16 , , , cord-309556-xv3413k1 199 17 with with IN cord-309556-xv3413k1 199 18 age age NN cord-309556-xv3413k1 199 19 - - HYPH cord-309556-xv3413k1 199 20 association association NN cord-309556-xv3413k1 199 21 annotations annotation NNS cord-309556-xv3413k1 199 22 . . . cord-309556-xv3413k1 200 1 Table table NN cord-309556-xv3413k1 200 2 S23 s23 NN cord-309556-xv3413k1 200 3 : : : cord-309556-xv3413k1 200 4 Differential differential JJ cord-309556-xv3413k1 200 5 expression expression NN cord-309556-xv3413k1 200 6 analysis analysis NN cord-309556-xv3413k1 200 7 in in IN cord-309556-xv3413k1 200 8 A549-ACE2 A549-ACE2 NNP cord-309556-xv3413k1 200 9 cells cell NNS cord-309556-xv3413k1 200 10 , , , cord-309556-xv3413k1 200 11 infected infect VBN cord-309556-xv3413k1 200 12 with with IN cord-309556-xv3413k1 200 13 SARS SARS NNP cord-309556-xv3413k1 200 14 - - HYPH cord-309556-xv3413k1 200 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 200 16 vs vs IN cord-309556-xv3413k1 200 17 mock mock JJ cord-309556-xv3413k1 200 18 control control NN cord-309556-xv3413k1 200 19 , , , cord-309556-xv3413k1 200 20 with with IN cord-309556-xv3413k1 200 21 age age NN cord-309556-xv3413k1 200 22 - - HYPH cord-309556-xv3413k1 200 23 association association NN cord-309556-xv3413k1 200 24 annotations annotation NNS cord-309556-xv3413k1 200 25 . . . cord-309556-xv3413k1 201 1 Table table NN cord-309556-xv3413k1 201 2 S24 S24 NNP cord-309556-xv3413k1 201 3 : : : cord-309556-xv3413k1 201 4 Differential differential JJ cord-309556-xv3413k1 201 5 expression expression NN cord-309556-xv3413k1 201 6 analysis analysis NN cord-309556-xv3413k1 201 7 in in IN cord-309556-xv3413k1 201 8 Calu-3 Calu-3 NNP cord-309556-xv3413k1 201 9 cells cell NNS cord-309556-xv3413k1 201 10 , , , cord-309556-xv3413k1 201 11 infected infect VBN cord-309556-xv3413k1 201 12 with with IN cord-309556-xv3413k1 201 13 SARS SARS NNP cord-309556-xv3413k1 201 14 - - HYPH cord-309556-xv3413k1 201 15 CoV-2 CoV-2 NNP cord-309556-xv3413k1 201 16 vs vs IN cord-309556-xv3413k1 201 17 mock mock JJ cord-309556-xv3413k1 201 18 control control NN cord-309556-xv3413k1 201 19 , , , cord-309556-xv3413k1 201 20 with with IN cord-309556-xv3413k1 201 21 age age NN cord-309556-xv3413k1 201 22 - - HYPH cord-309556-xv3413k1 201 23 association association NN cord-309556-xv3413k1 201 24 annotations annotation NNS cord-309556-xv3413k1 201 25 . . . cord-309556-xv3413k1 202 1 CDKN1B CDKN1B NNP cord-309556-xv3413k1 202 2 _SP cord-309556-xv3413k1 203 1 GNA13 gna13 IN cord-309556-xv3413k1 203 2 _SP cord-309556-xv3413k1 204 1 RAB8B RAB8B NNP cord-309556-xv3413k1 204 2 _SP cord-309556-xv3413k1 205 1 N4BP3 N4BP3 NNP cord-309556-xv3413k1 205 2 _SP cord-309556-xv3413k1 206 1 RASGRP1 RASGRP1 NNP cord-309556-xv3413k1 206 2 _SP cord-309556-xv3413k1 207 1 CAMSAP2 CAMSAP2 NNP cord-309556-xv3413k1 207 2 _SP cord-309556-xv3413k1 208 1 MXI1 MXI1 NNP cord-309556-xv3413k1 208 2 _SP cord-309556-xv3413k1 209 1 GEM GEM NNP cord-309556-xv3413k1 209 2 _SP cord-309556-xv3413k1 210 1 C1S c1s CC cord-309556-xv3413k1 210 2 _SP cord-309556-xv3413k1 211 1 RBM33 RBM33 NNP cord-309556-xv3413k1 211 2 _SP cord-309556-xv3413k1 212 1 RASA2 RASA2 NNP cord-309556-xv3413k1 212 2 _SP cord-309556-xv3413k1 213 1 BRWD1 BRWD1 NNP cord-309556-xv3413k1 213 2 _SP cord-309556-xv3413k1 214 1 PHC3 PHC3 NNP cord-309556-xv3413k1 214 2 _SP cord-309556-xv3413k1 215 1 GATAD2B GATAD2B NNP cord-309556-xv3413k1 215 2 _SP cord-309556-xv3413k1 216 1 PNRC1 PNRC1 NNP cord-309556-xv3413k1 216 2 _SP cord-309556-xv3413k1 217 1 ARID4B ARID4B NNP cord-309556-xv3413k1 217 2 _SP cord-309556-xv3413k1 218 1 ATRX ATRX NNP cord-309556-xv3413k1 218 2 _SP cord-309556-xv3413k1 219 1 CLK1 CLK1 NNP cord-309556-xv3413k1 219 2 _SP cord-309556-xv3413k1 220 1 PNISR PNISR NNP cord-309556-xv3413k1 220 2 _SP cord-309556-xv3413k1 221 1 PRTG PRTG NNP cord-309556-xv3413k1 221 2 _SP cord-309556-xv3413k1 222 1 H1F0 H1F0 NNP cord-309556-xv3413k1 222 2 _SP cord-309556-xv3413k1 223 1 NCKIPSD NCKIPSD NNP cord-309556-xv3413k1 223 2 _SP cord-309556-xv3413k1 224 1 CNN3 CNN3 NNP cord-309556-xv3413k1 224 2 _SP cord-309556-xv3413k1 224 3 PTOV1 PTOV1 NNP cord-309556-xv3413k1 224 4 _SP cord-309556-xv3413k1 225 1 CFD CFD NNP cord-309556-xv3413k1 225 2 _SP cord-309556-xv3413k1 225 3 RHOC RHOC NNP cord-309556-xv3413k1 225 4 _SP cord-309556-xv3413k1 226 1 POLR2F POLR2F NNP cord-309556-xv3413k1 226 2 _SP cord-309556-xv3413k1 227 1 GNAI2 GNAI2 NNP cord-309556-xv3413k1 227 2 _SP cord-309556-xv3413k1 228 1 TK1 tk1 JJ cord-309556-xv3413k1 228 2 _SP cord-309556-xv3413k1 229 1 TM4SF4 TM4SF4 NNP cord-309556-xv3413k1 229 2 _SP cord-309556-xv3413k1 230 1 PSKH1 PSKH1 NNP cord-309556-xv3413k1 230 2 _SP cord-309556-xv3413k1 231 1 AP1M2 AP1M2 NNP cord-309556-xv3413k1 231 2 _SP cord-309556-xv3413k1 232 1 MSH2 MSH2 NNP cord-309556-xv3413k1 232 2 _SP cord-309556-xv3413k1 233 1 ATP6V0E2 ATP6V0E2 NNP cord-309556-xv3413k1 233 2 _SP cord-309556-xv3413k1 234 1 PGAM5 PGAM5 NNP cord-309556-xv3413k1 234 2 _SP cord-309556-xv3413k1 235 1 MVK MVK NNP cord-309556-xv3413k1 235 2 _SP cord-309556-xv3413k1 236 1 AACS AACS NNP cord-309556-xv3413k1 236 2 _SP cord-309556-xv3413k1 237 1 ACACA ACACA NNP cord-309556-xv3413k1 237 2 _SP cord-309556-xv3413k1 238 1 ACSS2 ACSS2 NNP cord-309556-xv3413k1 238 2 _SP cord-309556-xv3413k1 239 1 NIPSNAP1 NIPSNAP1 NNP cord-309556-xv3413k1 239 2 _SP cord-309556-xv3413k1 240 1 NSDHL NSDHL NNP cord-309556-xv3413k1 240 2 _SP cord-309556-xv3413k1 241 1 AIFM1 aifm1 NN cord-309556-xv3413k1 241 2 _SP cord-309556-xv3413k1 242 1 AGR2 AGR2 NNP cord-309556-xv3413k1 242 2 _SP cord-309556-xv3413k1 243 1 GIPC1 GIPC1 NNP cord-309556-xv3413k1 243 2 _SP cord-309556-xv3413k1 244 1 MMAB MMAB NNP cord-309556-xv3413k1 244 2 _SP cord-309556-xv3413k1 245 1 HADH HADH NNP cord-309556-xv3413k1 245 2 _SP cord-309556-xv3413k1 245 3 QDPR QDPR NNP cord-309556-xv3413k1 245 4 _SP cord-309556-xv3413k1 246 1 AP1S1 AP1S1 NNP cord-309556-xv3413k1 246 2 _SP cord-309556-xv3413k1 247 1 NDUFA7 NDUFA7 NNP cord-309556-xv3413k1 247 2 _SP cord-309556-xv3413k1 248 1 POLDIP2 POLDIP2 NNP cord-309556-xv3413k1 248 2 _SP cord-309556-xv3413k1 249 1 AHCY AHCY NNP cord-309556-xv3413k1 249 2 _SP cord-309556-xv3413k1 250 1 MRPS28 MRPS28 NNS cord-309556-xv3413k1 250 2 _SP cord-309556-xv3413k1 251 1 SAMM50 samm50 XX cord-309556-xv3413k1 251 2 _SP cord-309556-xv3413k1 252 1 PRPF19 PRPF19 VBN cord-309556-xv3413k1 252 2 _SP cord-309556-xv3413k1 253 1 NUP93 NUP93 NNP cord-309556-xv3413k1 253 2 _SP cord-309556-xv3413k1 254 1 GBA GBA NNP cord-309556-xv3413k1 254 2 _SP cord-309556-xv3413k1 255 1 CLN3 CLN3 NNP cord-309556-xv3413k1 255 2 _SP cord-309556-xv3413k1 255 3 APEH APEH NNP cord-309556-xv3413k1 255 4 _SP cord-309556-xv3413k1 256 1 ATIC ATIC NNP cord-309556-xv3413k1 256 2 _SP cord-309556-xv3413k1 257 1 ARPC1B ARPC1B NNP cord-309556-xv3413k1 257 2 _SP cord-309556-xv3413k1 258 1 PPP1CA PPP1CA NNP cord-309556-xv3413k1 258 2 _SP cord-309556-xv3413k1 259 1 APRT APRT NNP cord-309556-xv3413k1 259 2 _SP cord-309556-xv3413k1 260 1 ATP6V0D1 ATP6V0D1 NNP cord-309556-xv3413k1 260 2 _SP cord-309556-xv3413k1 261 1 AKR1A1 AKR1A1 NNP cord-309556-xv3413k1 261 2 _SP cord-309556-xv3413k1 262 1 PHB PHB NNP cord-309556-xv3413k1 262 2 _SP cord-309556-xv3413k1 263 1 C1QBP C1QBP NNP cord-309556-xv3413k1 263 2 _SP cord-309556-xv3413k1 264 1 PARP1 PARP1 NNP cord-309556-xv3413k1 264 2 _SP cord-309556-xv3413k1 265 1 CBR1 CBR1 NNP cord-309556-xv3413k1 265 2 _SP cord-309556-xv3413k1 266 1 ACAT1 ACAT1 NNP cord-309556-xv3413k1 266 2 _SP cord-309556-xv3413k1 267 1 PDHB PDHB NNP cord-309556-xv3413k1 267 2 _SP cord-309556-xv3413k1 268 1 NDUFA9 NDUFA9 NNP cord-309556-xv3413k1 268 2 _SP cord-309556-xv3413k1 269 1 MRPL27 MRPL27 NNP cord-309556-xv3413k1 269 2 _SP cord-309556-xv3413k1 270 1 PRDX3 PRDX3 NNP cord-309556-xv3413k1 270 2 _SP cord-309556-xv3413k1 271 1 MTCH2 MTCH2 NNP cord-309556-xv3413k1 271 2 _SP cord-309556-xv3413k1 271 3 ORMDL2 ormdl2 XX cord-309556-xv3413k1 271 4 _SP cord-309556-xv3413k1 272 1 NDUFS3 NDUFS3 NNP cord-309556-xv3413k1 272 2 _SP cord-309556-xv3413k1 273 1 A a DT cord-309556-xv3413k1 273 2 T t NN cord-309556-xv3413k1 273 3 P p NN cord-309556-xv3413k1 273 4 1 1 CD cord-309556-xv3413k1 273 5 B b NN cord-309556-xv3413k1 273 6 1 1 CD cord-309556-xv3413k1 273 7 A a NN cord-309556-xv3413k1 273 8 L l NN cord-309556-xv3413k1 273 9 G g NN cord-309556-xv3413k1 274 1 5 5 CD cord-309556-xv3413k1 274 2 N n NN cord-309556-xv3413k1 274 3 E e NN cord-309556-xv3413k1 274 4 U u NN cord-309556-xv3413k1 274 5 1 1 CD cord-309556-xv3413k1 275 1 P p NN cord-309556-xv3413k1 275 2 R r NN cord-309556-xv3413k1 276 1 I -PRON- PRP cord-309556-xv3413k1 277 1 M M NNP cord-309556-xv3413k1 277 2 1 1 CD cord-309556-xv3413k1 278 1 C C NNP cord-309556-xv3413k1 279 1 E e NN cord-309556-xv3413k1 279 2 N n NN cord-309556-xv3413k1 280 1 P p NN cord-309556-xv3413k1 280 2 F f NN cord-309556-xv3413k1 280 3 H h NN cord-309556-xv3413k1 280 4 O o NN cord-309556-xv3413k1 281 1 O o UH cord-309556-xv3413k1 281 2 K k NN cord-309556-xv3413k1 281 3 1 1 CD cord-309556-xv3413k1 281 4 G g NN cord-309556-xv3413k1 281 5 C c NN cord-309556-xv3413k1 281 6 C c NN cord-309556-xv3413k1 281 7 1 1 CD cord-309556-xv3413k1 281 8 P p NN cord-309556-xv3413k1 282 1 I -PRON- PRP cord-309556-xv3413k1 283 1 G g NN cord-309556-xv3413k1 283 2 O o NN cord-309556-xv3413k1 283 3 N n NN cord-309556-xv3413k1 283 4 A a NN cord-309556-xv3413k1 284 1 R R NNP cord-309556-xv3413k1 284 2 S s NN cord-309556-xv3413k1 285 1 2 2 LS cord-309556-xv3413k1 285 2 A a NN cord-309556-xv3413k1 285 3 A a NN cord-309556-xv3413k1 285 4 R r NN cord-309556-xv3413k1 285 5 2 2 CD cord-309556-xv3413k1 285 6 A a NN cord-309556-xv3413k1 285 7 T t NN cord-309556-xv3413k1 285 8 P p NN cord-309556-xv3413k1 285 9 6 6 CD cord-309556-xv3413k1 285 10 V v NN cord-309556-xv3413k1 285 11 1 1 CD cord-309556-xv3413k1 286 1 A a DT cord-309556-xv3413k1 286 2 N n NN cord-309556-xv3413k1 286 3 D d NN cord-309556-xv3413k1 286 4 U u NN cord-309556-xv3413k1 286 5 F f NN cord-309556-xv3413k1 286 6 A a DT cord-309556-xv3413k1 286 7 F f NN cord-309556-xv3413k1 287 1 1 1 LS cord-309556-xv3413k1 287 2 A a CD cord-309556-xv3413k1 288 1 G g NN cord-309556-xv3413k1 289 1 P p NN cord-309556-xv3413k1 289 2 S s NN cord-309556-xv3413k1 290 1 N N NNP cord-309556-xv3413k1 291 1 P p NN cord-309556-xv3413k1 291 2 C c NN cord-309556-xv3413k1 291 3 2 2 CD cord-309556-xv3413k1 291 4 P p NN cord-309556-xv3413k1 291 5 P p NN cord-309556-xv3413k1 291 6 T t NN cord-309556-xv3413k1 291 7 1 1 CD cord-309556-xv3413k1 291 8 N n NN cord-309556-xv3413k1 291 9 D d NN cord-309556-xv3413k1 291 10 U u NN cord-309556-xv3413k1 291 11 F f NN cord-309556-xv3413k1 291 12 B b NN cord-309556-xv3413k1 291 13 9 9 CD cord-309556-xv3413k1 291 14 -log -log SYM cord-309556-xv3413k1 291 15 10 10 CD cord-309556-xv3413k1 291 16 ( ( -LRB- cord-309556-xv3413k1 291 17 adj adj JJ cord-309556-xv3413k1 291 18 . . . cord-309556-xv3413k1 292 1 p p NN cord-309556-xv3413k1 292 2 - - HYPH cord-309556-xv3413k1 292 3 value value NN cord-309556-xv3413k1 292 4 ) ) -RRB- cord-309556-xv3413k1 293 1 GEM GEM NNP cord-309556-xv3413k1 293 2 _SP cord-309556-xv3413k1 294 1 C1S c1s CC cord-309556-xv3413k1 294 2 _SP cord-309556-xv3413k1 295 1 GNA13 gna13 IN cord-309556-xv3413k1 295 2 _SP cord-309556-xv3413k1 296 1 RAB8B RAB8B NNP cord-309556-xv3413k1 296 2 _SP cord-309556-xv3413k1 297 1 BRWD1 BRWD1 NNP cord-309556-xv3413k1 297 2 _SP cord-309556-xv3413k1 298 1 CNOT6L CNOT6L NNP cord-309556-xv3413k1 298 2 _SP cord-309556-xv3413k1 299 1 CDKN1B CDKN1B NNP cord-309556-xv3413k1 299 2 _SP cord-309556-xv3413k1 300 1 CAMSAP2 CAMSAP2 NNP cord-309556-xv3413k1 300 2 _SP cord-309556-xv3413k1 301 1 MXI1 MXI1 NNP cord-309556-xv3413k1 301 2 _SP cord-309556-xv3413k1 302 1 RASA2 RASA2 NNP cord-309556-xv3413k1 302 2 _SP cord-309556-xv3413k1 303 1 RBM33 RBM33 NNP cord-309556-xv3413k1 303 2 _SP cord-309556-xv3413k1 304 1 GATAD2B GATAD2B NNP cord-309556-xv3413k1 304 2 _SP cord-309556-xv3413k1 305 1 PHC3 PHC3 NNP cord-309556-xv3413k1 305 2 _SP cord-309556-xv3413k1 306 1 CLK1 CLK1 NNP cord-309556-xv3413k1 306 2 _SP cord-309556-xv3413k1 307 1 ARID4B ARID4B NNP cord-309556-xv3413k1 307 2 _SP cord-309556-xv3413k1 308 1 ATRX ATRX NNP cord-309556-xv3413k1 308 2 _SP cord-309556-xv3413k1 309 1 PNISR PNISR NNP cord-309556-xv3413k1 309 2 _SP cord-309556-xv3413k1 310 1 PNRC1 PNRC1 NNP cord-309556-xv3413k1 310 2 _SP cord-309556-xv3413k1 311 1 PRTG PRTG NNP cord-309556-xv3413k1 311 2 _SP cord-309556-xv3413k1 312 1 H1F0 H1F0 NNP cord-309556-xv3413k1 312 2 _SP cord-309556-xv3413k1 313 1 NCKIPSD NCKIPSD NNP cord-309556-xv3413k1 313 2 _SP cord-309556-xv3413k1 314 1 CNN3 CNN3 NNP cord-309556-xv3413k1 314 2 _SP cord-309556-xv3413k1 315 1 GNAI2 GNAI2 NNP cord-309556-xv3413k1 315 2 _SP cord-309556-xv3413k1 316 1 RHOC RHOC NNP cord-309556-xv3413k1 316 2 _SP cord-309556-xv3413k1 317 1 CFD CFD NNP cord-309556-xv3413k1 317 2 _SP cord-309556-xv3413k1 318 1 PTOV1 PTOV1 NNP cord-309556-xv3413k1 318 2 _SP cord-309556-xv3413k1 319 1 POLR2F POLR2F NNP cord-309556-xv3413k1 319 2 _SP cord-309556-xv3413k1 320 1 AP1M2 AP1M2 NNP cord-309556-xv3413k1 320 2 _SP cord-309556-xv3413k1 321 1 AGR2 AGR2 NNP cord-309556-xv3413k1 321 2 _SP cord-309556-xv3413k1 322 1 TK1 tk1 JJ cord-309556-xv3413k1 322 2 _SP cord-309556-xv3413k1 322 3 TM4SF4 TM4SF4 NNP cord-309556-xv3413k1 322 4 _SP cord-309556-xv3413k1 322 5 GBA GBA NNP cord-309556-xv3413k1 322 6 _SP cord-309556-xv3413k1 323 1 PGAM5 PGAM5 NNP cord-309556-xv3413k1 323 2 _SP cord-309556-xv3413k1 324 1 PSKH1 PSKH1 NNP cord-309556-xv3413k1 324 2 _SP cord-309556-xv3413k1 325 1 ACSS2 ACSS2 NNP cord-309556-xv3413k1 325 2 _SP cord-309556-xv3413k1 326 1 ACACA ACACA NNP cord-309556-xv3413k1 326 2 _SP cord-309556-xv3413k1 327 1 AACS AACS NNP cord-309556-xv3413k1 327 2 _SP cord-309556-xv3413k1 328 1 MVK MVK NNP cord-309556-xv3413k1 328 2 _SP cord-309556-xv3413k1 329 1 MSH2 MSH2 NNP cord-309556-xv3413k1 329 2 _SP cord-309556-xv3413k1 330 1 ATP6V0E2 ATP6V0E2 NNP cord-309556-xv3413k1 330 2 _SP cord-309556-xv3413k1 331 1 NUP93 NUP93 NNP cord-309556-xv3413k1 331 2 _SP cord-309556-xv3413k1 332 1 NIPSNAP1 NIPSNAP1 NNP cord-309556-xv3413k1 332 2 _SP cord-309556-xv3413k1 333 1 NSDHL NSDHL NNP cord-309556-xv3413k1 333 2 _SP cord-309556-xv3413k1 334 1 AIFM1 aifm1 NN cord-309556-xv3413k1 334 2 _SP cord-309556-xv3413k1 335 1 ACAT1 ACAT1 NNP cord-309556-xv3413k1 335 2 _SP cord-309556-xv3413k1 336 1 CBR1 CBR1 NNP cord-309556-xv3413k1 336 2 _SP cord-309556-xv3413k1 337 1 GIPC1 GIPC1 NNP cord-309556-xv3413k1 337 2 _SP cord-309556-xv3413k1 338 1 MMAB MMAB NNP cord-309556-xv3413k1 338 2 _SP cord-309556-xv3413k1 339 1 HADH HADH NNP cord-309556-xv3413k1 339 2 _SP cord-309556-xv3413k1 340 1 MRPS28 MRPS28 NNS cord-309556-xv3413k1 340 2 _SP cord-309556-xv3413k1 341 1 AP1S1 AP1S1 NNP cord-309556-xv3413k1 341 2 _SP cord-309556-xv3413k1 342 1 POLDIP2 POLDIP2 NNP cord-309556-xv3413k1 342 2 _SP cord-309556-xv3413k1 342 3 QDPR QDPR NNP cord-309556-xv3413k1 342 4 _SP cord-309556-xv3413k1 343 1 AHCY AHCY NNP cord-309556-xv3413k1 343 2 _SP cord-309556-xv3413k1 343 3 ATIC ATIC NNP cord-309556-xv3413k1 343 4 _SP cord-309556-xv3413k1 343 5 APEH APEH NNP cord-309556-xv3413k1 343 6 _SP cord-309556-xv3413k1 344 1 CLN3 CLN3 NNP cord-309556-xv3413k1 344 2 _SP cord-309556-xv3413k1 345 1 PRPF19 PRPF19 VBN cord-309556-xv3413k1 345 2 _SP cord-309556-xv3413k1 346 1 SAMM50 samm50 XX cord-309556-xv3413k1 346 2 _SP cord-309556-xv3413k1 347 1 ARPC1B ARPC1B NNP cord-309556-xv3413k1 347 2 _SP cord-309556-xv3413k1 348 1 PPP1CA PPP1CA NNP cord-309556-xv3413k1 348 2 _SP cord-309556-xv3413k1 349 1 APRT APRT NNP cord-309556-xv3413k1 349 2 _SP cord-309556-xv3413k1 350 1 PARP1 PARP1 NNP cord-309556-xv3413k1 350 2 _SP cord-309556-xv3413k1 351 1 PDHB PDHB NNP cord-309556-xv3413k1 351 2 _SP cord-309556-xv3413k1 352 1 MTCH2 MTCH2 NNP cord-309556-xv3413k1 352 2 _SP cord-309556-xv3413k1 353 1 NDUFA9 NDUFA9 NNP cord-309556-xv3413k1 353 2 _SP cord-309556-xv3413k1 354 1 MRPL27 MRPL27 NNP cord-309556-xv3413k1 354 2 _SP cord-309556-xv3413k1 355 1 ASNA1 ASNA1 NNP cord-309556-xv3413k1 355 2 _SP cord-309556-xv3413k1 356 1 NDUFS3 NDUFS3 NNP cord-309556-xv3413k1 356 2 _SP cord-309556-xv3413k1 357 1 C1QBP C1QBP NNP cord-309556-xv3413k1 357 2 _SP cord-309556-xv3413k1 358 1 NDUFA7 NDUFA7 NNP cord-309556-xv3413k1 358 2 _SP cord-309556-xv3413k1 359 1 PHB PHB NNP cord-309556-xv3413k1 359 2 _SP cord-309556-xv3413k1 359 3 ORMDL2 ormdl2 XX cord-309556-xv3413k1 359 4 _SP cord-309556-xv3413k1 360 1 ATP6V0D1 ATP6V0D1 NNP cord-309556-xv3413k1 360 2 _SP cord-309556-xv3413k1 361 1 AKR1A1 AKR1A1 NNP cord-309556-xv3413k1 361 2 _SP cord-309556-xv3413k1 361 3 PRDX3 PRDX3 NNP cord-309556-xv3413k1 361 4 _SP cord-309556-xv3413k1 361 5 Estimating estimate VBG cord-309556-xv3413k1 361 6 clinical clinical JJ cord-309556-xv3413k1 361 7 severity severity NN cord-309556-xv3413k1 361 8 of of IN cord-309556-xv3413k1 361 9 COVID-19 COVID-19 NNP cord-309556-xv3413k1 361 10 from from IN cord-309556-xv3413k1 361 11 the the DT cord-309556-xv3413k1 361 12 transmission transmission NN cord-309556-xv3413k1 361 13 dynamics dynamic NNS cord-309556-xv3413k1 361 14 in in IN cord-309556-xv3413k1 361 15 Wuhan Wuhan NNP cord-309556-xv3413k1 361 16 , , , cord-309556-xv3413k1 361 17 China China NNP cord-309556-xv3413k1 361 18 Adjusted adjust VBD cord-309556-xv3413k1 361 19 age age NN cord-309556-xv3413k1 361 20 - - HYPH cord-309556-xv3413k1 361 21 specific specific JJ cord-309556-xv3413k1 361 22 case case NN cord-309556-xv3413k1 361 23 fatality fatality NN cord-309556-xv3413k1 361 24 ratio ratio NN cord-309556-xv3413k1 361 25 during during IN cord-309556-xv3413k1 361 26 the the DT cord-309556-xv3413k1 361 27 COVID-19 covid-19 JJ cord-309556-xv3413k1 361 28 epidemic epidemic NN cord-309556-xv3413k1 361 29 in in IN cord-309556-xv3413k1 361 30 Hubei Hubei NNP cord-309556-xv3413k1 361 31 , , , cord-309556-xv3413k1 361 32 China China NNP cord-309556-xv3413k1 361 33 Case Case NNP cord-309556-xv3413k1 361 34 - - HYPH cord-309556-xv3413k1 361 35 Fatality Fatality NNP cord-309556-xv3413k1 361 36 Rate Rate NNP cord-309556-xv3413k1 361 37 and and CC cord-309556-xv3413k1 361 38 Characteristics characteristic NNS cord-309556-xv3413k1 361 39 of of IN cord-309556-xv3413k1 361 40 Patients patient NNS cord-309556-xv3413k1 361 41 Dying die VBG cord-309556-xv3413k1 361 42 in in IN cord-309556-xv3413k1 361 43 Relation Relation NNP cord-309556-xv3413k1 361 44 to to TO cord-309556-xv3413k1 361 45 COVID-19 covid-19 VB cord-309556-xv3413k1 361 46 in in IN cord-309556-xv3413k1 361 47 Italy Italy NNP cord-309556-xv3413k1 361 48 Coronavirus Coronavirus NNP cord-309556-xv3413k1 361 49 Disease Disease NNP cord-309556-xv3413k1 361 50 2019 2019 CD cord-309556-xv3413k1 362 1 ( ( -LRB- cord-309556-xv3413k1 362 2 COVID-19 covid-19 VB cord-309556-xv3413k1 362 3 ) ) -RRB- cord-309556-xv3413k1 362 4 in in IN cord-309556-xv3413k1 362 5 Italy Italy NNP cord-309556-xv3413k1 362 6 Severe Severe NNP cord-309556-xv3413k1 362 7 Outcomes Outcomes NNPS cord-309556-xv3413k1 363 1 Among among IN cord-309556-xv3413k1 363 2 Patients patient NNS cord-309556-xv3413k1 363 3 with with IN cord-309556-xv3413k1 363 4 Coronavirus Coronavirus NNP cord-309556-xv3413k1 363 5 Disease Disease NNP cord-309556-xv3413k1 363 6 2019 2019 CD cord-309556-xv3413k1 364 1 ( ( -LRB- cord-309556-xv3413k1 364 2 COVID-19 covid-19 VB cord-309556-xv3413k1 364 3 ) ) -RRB- cord-309556-xv3413k1 364 4 -United -unite VBD cord-309556-xv3413k1 364 5 States States NNP cord-309556-xv3413k1 364 6 A A NNP cord-309556-xv3413k1 364 7 Novel Novel NNP cord-309556-xv3413k1 364 8 Coronavirus Coronavirus NNP cord-309556-xv3413k1 364 9 from from IN cord-309556-xv3413k1 364 10 Patients patient NNS cord-309556-xv3413k1 364 11 with with IN cord-309556-xv3413k1 364 12 Pneumonia Pneumonia NNP cord-309556-xv3413k1 364 13 in in IN cord-309556-xv3413k1 364 14 China China NNP cord-309556-xv3413k1 364 15 Genomic Genomic NNP cord-309556-xv3413k1 364 16 characterisation characterisation NN cord-309556-xv3413k1 364 17 and and CC cord-309556-xv3413k1 364 18 epidemiology epidemiology NN cord-309556-xv3413k1 364 19 of of IN cord-309556-xv3413k1 364 20 2019 2019 CD cord-309556-xv3413k1 364 21 novel novel JJ cord-309556-xv3413k1 364 22 coronavirus coronavirus NN cord-309556-xv3413k1 364 23 : : : cord-309556-xv3413k1 364 24 implications implication NNS cord-309556-xv3413k1 364 25 for for IN cord-309556-xv3413k1 364 26 virus virus NN cord-309556-xv3413k1 364 27 origins origin NNS cord-309556-xv3413k1 364 28 and and CC cord-309556-xv3413k1 364 29 receptor receptor NN cord-309556-xv3413k1 364 30 binding bind VBG cord-309556-xv3413k1 364 31 A a DT cord-309556-xv3413k1 364 32 pneumonia pneumonia NN cord-309556-xv3413k1 364 33 outbreak outbreak NN cord-309556-xv3413k1 364 34 associated associate VBN cord-309556-xv3413k1 364 35 with with IN cord-309556-xv3413k1 364 36 a a DT cord-309556-xv3413k1 364 37 new new JJ cord-309556-xv3413k1 364 38 coronavirus coronavirus NN cord-309556-xv3413k1 364 39 of of IN cord-309556-xv3413k1 364 40 probable probable JJ cord-309556-xv3413k1 364 41 bat bat NN cord-309556-xv3413k1 364 42 origin origin NN cord-309556-xv3413k1 364 43 Epidemiological epidemiological JJ cord-309556-xv3413k1 364 44 Characteristics characteristic NNS cord-309556-xv3413k1 364 45 of of IN cord-309556-xv3413k1 364 46 2143 2143 CD cord-309556-xv3413k1 364 47 Pediatric Pediatric NNP cord-309556-xv3413k1 364 48 Patients Patients NNPS cord-309556-xv3413k1 364 49 With with IN cord-309556-xv3413k1 364 50 Coronavirus Coronavirus NNP cord-309556-xv3413k1 364 51 Disease Disease NNP cord-309556-xv3413k1 364 52 in in IN cord-309556-xv3413k1 364 53 China China NNP cord-309556-xv3413k1 365 1 The the DT cord-309556-xv3413k1 365 2 Genotype Genotype NNP cord-309556-xv3413k1 365 3 - - HYPH cord-309556-xv3413k1 365 4 Tissue Tissue NNP cord-309556-xv3413k1 365 5 Expression expression NN cord-309556-xv3413k1 365 6 ( ( -LRB- cord-309556-xv3413k1 365 7 GTEx gtex NN cord-309556-xv3413k1 365 8 ) ) -RRB- cord-309556-xv3413k1 365 9 project project VB cord-309556-xv3413k1 365 10 A a DT cord-309556-xv3413k1 365 11 Novel Novel NNP cord-309556-xv3413k1 365 12 Approach Approach NNP cord-309556-xv3413k1 365 13 to to IN cord-309556-xv3413k1 365 14 High High NNP cord-309556-xv3413k1 365 15 - - HYPH cord-309556-xv3413k1 365 16 Quality Quality NNP cord-309556-xv3413k1 365 17 Postmortem Postmortem NNP cord-309556-xv3413k1 365 18 Tissue Tissue NNP cord-309556-xv3413k1 365 19 Procurement procurement NN cord-309556-xv3413k1 365 20 : : : cord-309556-xv3413k1 366 1 The the DT cord-309556-xv3413k1 366 2 GTEx gtex NN cord-309556-xv3413k1 366 3 Project Project NNP cord-309556-xv3413k1 366 4 Cryo Cryo NNP cord-309556-xv3413k1 366 5 - - HYPH cord-309556-xv3413k1 366 6 EM EM NNP cord-309556-xv3413k1 366 7 structure structure NN cord-309556-xv3413k1 366 8 of of IN cord-309556-xv3413k1 366 9 the the DT cord-309556-xv3413k1 366 10 2019-nCoV 2019-ncov CD cord-309556-xv3413k1 366 11 spike spike NN cord-309556-xv3413k1 366 12 in in IN cord-309556-xv3413k1 366 13 the the DT cord-309556-xv3413k1 366 14 prefusion prefusion NN cord-309556-xv3413k1 366 15 conformation conformation NN cord-309556-xv3413k1 366 16 Receptor Receptor NNP cord-309556-xv3413k1 366 17 Recognition Recognition NNP cord-309556-xv3413k1 366 18 by by IN cord-309556-xv3413k1 366 19 the the DT cord-309556-xv3413k1 366 20 Novel Novel NNP cord-309556-xv3413k1 366 21 Coronavirus Coronavirus NNP cord-309556-xv3413k1 366 22 from from IN cord-309556-xv3413k1 366 23 Wuhan Wuhan NNP cord-309556-xv3413k1 366 24 : : : cord-309556-xv3413k1 366 25 an an DT cord-309556-xv3413k1 366 26 Analysis Analysis NNP cord-309556-xv3413k1 366 27 Based base VBN cord-309556-xv3413k1 366 28 on on IN cord-309556-xv3413k1 366 29 Decade decade NN cord-309556-xv3413k1 366 30 - - HYPH cord-309556-xv3413k1 366 31 Long Long NNP cord-309556-xv3413k1 366 32 Structural Structural NNP cord-309556-xv3413k1 366 33 Studies Studies NNPS cord-309556-xv3413k1 366 34 of of IN cord-309556-xv3413k1 366 35 SARS SARS NNP cord-309556-xv3413k1 366 36 Coronavirus Coronavirus NNP cord-309556-xv3413k1 366 37 SARS SARS NNP cord-309556-xv3413k1 366 38 - - HYPH cord-309556-xv3413k1 366 39 CoV-2 CoV-2 NNP cord-309556-xv3413k1 366 40 Cell Cell NNP cord-309556-xv3413k1 366 41 Entry entry NN cord-309556-xv3413k1 366 42 Depends depend VBZ cord-309556-xv3413k1 366 43 on on IN cord-309556-xv3413k1 366 44 ACE2 ACE2 NNP cord-309556-xv3413k1 366 45 and and CC cord-309556-xv3413k1 366 46 TMPRSS2 TMPRSS2 NNP cord-309556-xv3413k1 366 47 and and CC cord-309556-xv3413k1 366 48 Is be VBZ cord-309556-xv3413k1 366 49 Blocked block VBN cord-309556-xv3413k1 366 50 by by IN cord-309556-xv3413k1 366 51 a a DT cord-309556-xv3413k1 366 52 Clinically clinically RB cord-309556-xv3413k1 366 53 Proven Proven NNP cord-309556-xv3413k1 366 54 Protease Protease NNP cord-309556-xv3413k1 366 55 Inhibitor Inhibitor NNP cord-309556-xv3413k1 366 56 Structure Structure NNP cord-309556-xv3413k1 366 57 , , , cord-309556-xv3413k1 366 58 Function Function NNP cord-309556-xv3413k1 366 59 , , , cord-309556-xv3413k1 366 60 and and CC cord-309556-xv3413k1 366 61 Antigenicity Antigenicity NNP cord-309556-xv3413k1 366 62 of of IN cord-309556-xv3413k1 366 63 the the DT cord-309556-xv3413k1 366 64 SARS SARS NNP cord-309556-xv3413k1 366 65 - - HYPH cord-309556-xv3413k1 366 66 CoV-2 CoV-2 NNP cord-309556-xv3413k1 366 67 Spike Spike NNP cord-309556-xv3413k1 366 68 Glycoprotein Glycoprotein NNP cord-309556-xv3413k1 366 69 COVID-19 COVID-19 NNP cord-309556-xv3413k1 366 70 and and CC cord-309556-xv3413k1 366 71 Italy Italy NNP cord-309556-xv3413k1 366 72 : : : cord-309556-xv3413k1 366 73 what what WP cord-309556-xv3413k1 366 74 next next JJ cord-309556-xv3413k1 366 75 ? ? . cord-309556-xv3413k1 367 1 The the DT cord-309556-xv3413k1 367 2 Lancet Lancet NNP cord-309556-xv3413k1 367 3 0 0 CD cord-309556-xv3413k1 367 4 Risk risk NN cord-309556-xv3413k1 367 5 Factors factor NNS cord-309556-xv3413k1 367 6 Associated associate VBN cord-309556-xv3413k1 367 7 With with IN cord-309556-xv3413k1 367 8 Acute acute JJ cord-309556-xv3413k1 367 9 Respiratory respiratory JJ cord-309556-xv3413k1 367 10 Distress Distress NNP cord-309556-xv3413k1 367 11 Syndrome Syndrome NNP cord-309556-xv3413k1 367 12 and and CC cord-309556-xv3413k1 367 13 Death death NN cord-309556-xv3413k1 367 14 in in IN cord-309556-xv3413k1 367 15 Patients Patients NNP cord-309556-xv3413k1 367 16 With with IN cord-309556-xv3413k1 367 17 Coronavirus Coronavirus NNP cord-309556-xv3413k1 367 18 Disease Disease NNP cord-309556-xv3413k1 368 1 The the DT cord-309556-xv3413k1 368 2 Epidemiological Epidemiological NNP cord-309556-xv3413k1 368 3 Characteristics Characteristics NNPS cord-309556-xv3413k1 368 4 of of IN cord-309556-xv3413k1 368 5 an an DT cord-309556-xv3413k1 368 6 Outbreak outbreak NN cord-309556-xv3413k1 368 7 of of IN cord-309556-xv3413k1 368 8 2019 2019 CD cord-309556-xv3413k1 368 9 Novel Novel NNP cord-309556-xv3413k1 368 10 Coronavirus Coronavirus NNP cord-309556-xv3413k1 368 11 Diseases Diseases NNPS cord-309556-xv3413k1 368 12 ( ( -LRB- cord-309556-xv3413k1 368 13 COVID-19 COVID-19 NNP cord-309556-xv3413k1 368 14 ) ) -RRB- cord-309556-xv3413k1 368 15 -China -China . cord-309556-xv3413k1 368 16 scRNA scRNA JJS cord-309556-xv3413k1 368 17 - - HYPH cord-309556-xv3413k1 368 18 seq seq NN cord-309556-xv3413k1 368 19 assessment assessment NN cord-309556-xv3413k1 368 20 of of IN cord-309556-xv3413k1 368 21 the the DT cord-309556-xv3413k1 368 22 human human JJ cord-309556-xv3413k1 368 23 lung lung NN cord-309556-xv3413k1 368 24 , , , cord-309556-xv3413k1 368 25 spleen spleen NNS cord-309556-xv3413k1 368 26 , , , cord-309556-xv3413k1 368 27 and and CC cord-309556-xv3413k1 368 28 esophagus esophagus NN cord-309556-xv3413k1 368 29 tissue tissue NN cord-309556-xv3413k1 368 30 stability stability NN cord-309556-xv3413k1 368 31 after after IN cord-309556-xv3413k1 368 32 cold cold JJ cord-309556-xv3413k1 368 33 preservation preservation NN cord-309556-xv3413k1 368 34 Single single JJ cord-309556-xv3413k1 368 35 - - HYPH cord-309556-xv3413k1 368 36 cell cell NN cord-309556-xv3413k1 368 37 RNA rna NN cord-309556-xv3413k1 368 38 expression expression NN cord-309556-xv3413k1 368 39 profiling profiling NN cord-309556-xv3413k1 368 40 of of IN cord-309556-xv3413k1 368 41 ACE2 ACE2 NNP cord-309556-xv3413k1 368 42 , , , cord-309556-xv3413k1 368 43 the the DT cord-309556-xv3413k1 368 44 putative putative JJ cord-309556-xv3413k1 368 45 receptor receptor NN cord-309556-xv3413k1 368 46 of of IN cord-309556-xv3413k1 368 47 Wuhan Wuhan NNP cord-309556-xv3413k1 368 48 Single Single NNP cord-309556-xv3413k1 368 49 cell cell NN cord-309556-xv3413k1 368 50 RNA rna NN cord-309556-xv3413k1 368 51 sequencing sequencing NN cord-309556-xv3413k1 368 52 of of IN cord-309556-xv3413k1 368 53 13 13 CD cord-309556-xv3413k1 368 54 human human JJ cord-309556-xv3413k1 368 55 tissues tissue NNS cord-309556-xv3413k1 368 56 identify identify VB cord-309556-xv3413k1 368 57 cell cell NN cord-309556-xv3413k1 368 58 types type NNS cord-309556-xv3413k1 368 59 and and CC cord-309556-xv3413k1 368 60 receptors receptor NNS cord-309556-xv3413k1 368 61 of of IN cord-309556-xv3413k1 368 62 human human JJ cord-309556-xv3413k1 368 63 coronaviruses coronaviruse NNS cord-309556-xv3413k1 368 64 Moderated moderate VBN cord-309556-xv3413k1 368 65 estimation estimation NN cord-309556-xv3413k1 368 66 of of IN cord-309556-xv3413k1 368 67 fold fold JJ cord-309556-xv3413k1 368 68 change change NN cord-309556-xv3413k1 368 69 and and CC cord-309556-xv3413k1 368 70 dispersion dispersion NN cord-309556-xv3413k1 368 71 for for IN cord-309556-xv3413k1 368 72 RNA RNA NNP cord-309556-xv3413k1 368 73 - - HYPH cord-309556-xv3413k1 368 74 seq seq NN cord-309556-xv3413k1 368 75 data datum NNS cord-309556-xv3413k1 368 76 with with IN cord-309556-xv3413k1 368 77 DESeq2 DESeq2 NNP cord-309556-xv3413k1 368 78 Effect Effect NNP cord-309556-xv3413k1 368 79 of of IN cord-309556-xv3413k1 368 80 aging age VBG cord-309556-xv3413k1 368 81 on on IN cord-309556-xv3413k1 368 82 respiratory respiratory JJ cord-309556-xv3413k1 368 83 system system NN cord-309556-xv3413k1 368 84 physiology physiology NN cord-309556-xv3413k1 368 85 and and CC cord-309556-xv3413k1 368 86 immunology immunology NN cord-309556-xv3413k1 368 87 Alterations alteration NNS cord-309556-xv3413k1 368 88 in in IN cord-309556-xv3413k1 368 89 Platelet Platelet NNP cord-309556-xv3413k1 368 90 Functions function NNS cord-309556-xv3413k1 368 91 During during IN cord-309556-xv3413k1 368 92 Aging age VBG cord-309556-xv3413k1 368 93 : : : cord-309556-xv3413k1 368 94 Clinical clinical JJ cord-309556-xv3413k1 368 95 Correlations correlation NNS cord-309556-xv3413k1 368 96 with with IN cord-309556-xv3413k1 368 97 Thrombo Thrombo NNP cord-309556-xv3413k1 368 98 - - HYPH cord-309556-xv3413k1 368 99 Inflammatory Inflammatory NNP cord-309556-xv3413k1 368 100 Disease Disease NNP cord-309556-xv3413k1 368 101 in in IN cord-309556-xv3413k1 368 102 Older old JJR cord-309556-xv3413k1 368 103 Adults Adults NNPS cord-309556-xv3413k1 369 1 A a DT cord-309556-xv3413k1 369 2 crucial crucial JJ cord-309556-xv3413k1 369 3 role role NN cord-309556-xv3413k1 369 4 of of IN cord-309556-xv3413k1 369 5 angiotensin angiotensin NN cord-309556-xv3413k1 369 6 converting convert VBG cord-309556-xv3413k1 369 7 enzyme enzyme NN cord-309556-xv3413k1 369 8 2 2 CD cord-309556-xv3413k1 369 9 ( ( -LRB- cord-309556-xv3413k1 369 10 ACE2 ACE2 NNP cord-309556-xv3413k1 369 11 ) ) -RRB- cord-309556-xv3413k1 369 12 in in IN cord-309556-xv3413k1 369 13 SARS SARS NNP cord-309556-xv3413k1 369 14 coronavirus coronavirus NN cord-309556-xv3413k1 369 15 - - HYPH cord-309556-xv3413k1 369 16 induced induce VBN cord-309556-xv3413k1 369 17 lung lung NN cord-309556-xv3413k1 369 18 injury injury NN cord-309556-xv3413k1 369 19 Angiotensin Angiotensin NNP cord-309556-xv3413k1 369 20 - - HYPH cord-309556-xv3413k1 369 21 converting convert VBG cord-309556-xv3413k1 369 22 enzyme enzyme NN cord-309556-xv3413k1 369 23 2 2 CD cord-309556-xv3413k1 369 24 protects protect VBZ cord-309556-xv3413k1 369 25 from from IN cord-309556-xv3413k1 369 26 severe severe JJ cord-309556-xv3413k1 369 27 acute acute JJ cord-309556-xv3413k1 369 28 lung lung NN cord-309556-xv3413k1 369 29 failure failure NN cord-309556-xv3413k1 369 30 Identification identification NN cord-309556-xv3413k1 369 31 of of IN cord-309556-xv3413k1 369 32 a a DT cord-309556-xv3413k1 369 33 Novel Novel NNP cord-309556-xv3413k1 369 34 Coronavirus Coronavirus NNP cord-309556-xv3413k1 369 35 in in IN cord-309556-xv3413k1 369 36 Patients patient NNS cord-309556-xv3413k1 369 37 with with IN cord-309556-xv3413k1 369 38 Severe severe JJ cord-309556-xv3413k1 369 39 Acute acute JJ cord-309556-xv3413k1 369 40 Respiratory respiratory JJ cord-309556-xv3413k1 369 41 Syndrome syndrome NN cord-309556-xv3413k1 370 1 A a DT cord-309556-xv3413k1 370 2 Novel Novel NNP cord-309556-xv3413k1 370 3 Angiotensin Angiotensin NNP cord-309556-xv3413k1 370 4 - - HYPH cord-309556-xv3413k1 370 5 Converting convert VBG cord-309556-xv3413k1 370 6 Enzyme Enzyme NNP cord-309556-xv3413k1 370 7 - - HYPH cord-309556-xv3413k1 370 8 Related relate VBN cord-309556-xv3413k1 370 9 Carboxypeptidase Carboxypeptidase NNP cord-309556-xv3413k1 370 10 ( ( -LRB- cord-309556-xv3413k1 370 11 ACE2 ACE2 NNP cord-309556-xv3413k1 370 12 ) ) -RRB- cord-309556-xv3413k1 371 1 Converts convert VBZ cord-309556-xv3413k1 371 2 Angiotensin angiotensin NN cord-309556-xv3413k1 371 3 I -PRON- PRP cord-309556-xv3413k1 371 4 to to IN cord-309556-xv3413k1 372 1 Angiotensin angiotensin NN cord-309556-xv3413k1 372 2 1 1 CD cord-309556-xv3413k1 373 1 -9 -9 NNP cord-309556-xv3413k1 373 2 A a DT cord-309556-xv3413k1 373 3 Human human JJ cord-309556-xv3413k1 373 4 Homolog Homolog NNP cord-309556-xv3413k1 373 5 of of IN cord-309556-xv3413k1 373 6 Angiotensin Angiotensin NNP cord-309556-xv3413k1 373 7 - - HYPH cord-309556-xv3413k1 373 8 converting convert VBG cord-309556-xv3413k1 373 9 Enzyme enzyme NN cord-309556-xv3413k1 373 10 CLONING cloning NN cord-309556-xv3413k1 373 11 AND and CC cord-309556-xv3413k1 373 12 FUNCTIONAL functional JJ cord-309556-xv3413k1 373 13 EXPRESSION expression NN cord-309556-xv3413k1 374 1 AS as IN cord-309556-xv3413k1 375 1 A a DT cord-309556-xv3413k1 375 2 CAPTOPRIL CAPTOPRIL NNP cord-309556-xv3413k1 375 3 - - HYPH cord-309556-xv3413k1 375 4 INSENSITIVE INSENSITIVE NNP cord-309556-xv3413k1 375 5 Angiotensin Angiotensin NNP cord-309556-xv3413k1 375 6 - - HYPH cord-309556-xv3413k1 375 7 converting convert VBG cord-309556-xv3413k1 375 8 enzyme enzyme NN cord-309556-xv3413k1 375 9 2 2 CD cord-309556-xv3413k1 375 10 is be VBZ cord-309556-xv3413k1 375 11 an an DT cord-309556-xv3413k1 375 12 essential essential JJ cord-309556-xv3413k1 375 13 regulator regulator NN cord-309556-xv3413k1 375 14 of of IN cord-309556-xv3413k1 375 15 heart heart NN cord-309556-xv3413k1 375 16 function function NN cord-309556-xv3413k1 375 17 Clinical clinical JJ cord-309556-xv3413k1 375 18 Characteristics characteristic NNS cord-309556-xv3413k1 375 19 of of IN cord-309556-xv3413k1 375 20 138 138 CD cord-309556-xv3413k1 375 21 Hospitalized hospitalize VBN cord-309556-xv3413k1 375 22 Patients patient NNS cord-309556-xv3413k1 375 23 With with IN cord-309556-xv3413k1 375 24 2019 2019 CD cord-309556-xv3413k1 375 25 Novel Novel NNP cord-309556-xv3413k1 375 26 Coronavirus Coronavirus NNP cord-309556-xv3413k1 375 27 - - HYPH cord-309556-xv3413k1 375 28 Infected infect VBN cord-309556-xv3413k1 375 29 Pneumonia Pneumonia NNP cord-309556-xv3413k1 375 30 in in IN cord-309556-xv3413k1 375 31 Wuhan Wuhan NNP cord-309556-xv3413k1 375 32 , , , cord-309556-xv3413k1 375 33 China China NNP cord-309556-xv3413k1 375 34 Baseline Baseline NNP cord-309556-xv3413k1 375 35 Characteristics Characteristics NNP cord-309556-xv3413k1 375 36 and and CC cord-309556-xv3413k1 375 37 Outcomes Outcomes NNPS cord-309556-xv3413k1 375 38 of of IN cord-309556-xv3413k1 375 39 1591 1591 CD cord-309556-xv3413k1 375 40 Patients patient NNS cord-309556-xv3413k1 375 41 Infected infect VBN cord-309556-xv3413k1 375 42 With with IN cord-309556-xv3413k1 375 43 SARS SARS NNP cord-309556-xv3413k1 375 44 - - HYPH cord-309556-xv3413k1 375 45 CoV-2 CoV-2 NNP cord-309556-xv3413k1 376 1 Admitted admit VBN cord-309556-xv3413k1 376 2 to to IN cord-309556-xv3413k1 376 3 ICUs ICUs NNP cord-309556-xv3413k1 376 4 of of IN cord-309556-xv3413k1 376 5 the the DT cord-309556-xv3413k1 376 6 Lombardy Lombardy NNP cord-309556-xv3413k1 376 7 Region Region NNP cord-309556-xv3413k1 377 1 The the DT cord-309556-xv3413k1 377 2 Mitochondrial Mitochondrial NNP cord-309556-xv3413k1 377 3 Basis Basis NNP cord-309556-xv3413k1 377 4 of of IN cord-309556-xv3413k1 377 5 Aging Aging NNP cord-309556-xv3413k1 377 6 and and CC cord-309556-xv3413k1 377 7 Age Age NNP cord-309556-xv3413k1 377 8 - - HYPH cord-309556-xv3413k1 377 9 Related relate VBN cord-309556-xv3413k1 377 10 Disorders disorder NNS cord-309556-xv3413k1 378 1 The the DT cord-309556-xv3413k1 378 2 Mitochondrial Mitochondrial NNP cord-309556-xv3413k1 378 3 Basis Basis NNP cord-309556-xv3413k1 378 4 of of IN cord-309556-xv3413k1 378 5 Aging age VBG cord-309556-xv3413k1 378 6 Mitochondrial mitochondrial JJ cord-309556-xv3413k1 378 7 dysfunction dysfunction NN cord-309556-xv3413k1 378 8 in in IN cord-309556-xv3413k1 378 9 the the DT cord-309556-xv3413k1 378 10 elderly elderly JJ cord-309556-xv3413k1 378 11 : : : cord-309556-xv3413k1 378 12 possible possible JJ cord-309556-xv3413k1 378 13 role role NN cord-309556-xv3413k1 378 14 in in IN cord-309556-xv3413k1 378 15 insulin insulin NN cord-309556-xv3413k1 378 16 resistance resistance NN cord-309556-xv3413k1 378 17 Lipid lipid NN cord-309556-xv3413k1 378 18 rafts raft NNS cord-309556-xv3413k1 378 19 are be VBP cord-309556-xv3413k1 378 20 involved involve VBN cord-309556-xv3413k1 378 21 in in IN cord-309556-xv3413k1 378 22 SARS SARS NNP cord-309556-xv3413k1 378 23 - - HYPH cord-309556-xv3413k1 378 24 CoV CoV NNP cord-309556-xv3413k1 378 25 entry entry NN cord-309556-xv3413k1 378 26 into into IN cord-309556-xv3413k1 378 27 Vero Vero NNP cord-309556-xv3413k1 378 28 E6 E6 NNP cord-309556-xv3413k1 378 29 cells cell NNS cord-309556-xv3413k1 378 30 SARS SARS NNP cord-309556-xv3413k1 378 31 coronavirus coronavirus NN cord-309556-xv3413k1 378 32 entry entry NN cord-309556-xv3413k1 378 33 into into IN cord-309556-xv3413k1 378 34 host host NN cord-309556-xv3413k1 378 35 cells cell NNS cord-309556-xv3413k1 378 36 through through IN cord-309556-xv3413k1 378 37 a a DT cord-309556-xv3413k1 378 38 novel novel JJ cord-309556-xv3413k1 378 39 clathrin clathrin NN cord-309556-xv3413k1 378 40 - - : cord-309556-xv3413k1 378 41 and and CC cord-309556-xv3413k1 378 42 caveolaeindependent caveolaeindependent NN cord-309556-xv3413k1 378 43 endocytic endocytic JJ cord-309556-xv3413k1 378 44 pathway pathway NN cord-309556-xv3413k1 378 45 Lipid Lipid NNP cord-309556-xv3413k1 378 46 rafts raft NNS cord-309556-xv3413k1 378 47 play play VBP cord-309556-xv3413k1 378 48 an an DT cord-309556-xv3413k1 378 49 important important JJ cord-309556-xv3413k1 378 50 role role NN cord-309556-xv3413k1 378 51 in in IN cord-309556-xv3413k1 378 52 the the DT cord-309556-xv3413k1 378 53 early early JJ cord-309556-xv3413k1 378 54 stage stage NN cord-309556-xv3413k1 378 55 of of IN cord-309556-xv3413k1 378 56 severe severe JJ cord-309556-xv3413k1 378 57 acute acute JJ cord-309556-xv3413k1 378 58 respiratory respiratory JJ cord-309556-xv3413k1 378 59 syndrome syndrome NN cord-309556-xv3413k1 378 60 - - HYPH cord-309556-xv3413k1 378 61 coronavirus coronavirus NN cord-309556-xv3413k1 378 62 life life NN cord-309556-xv3413k1 378 63 cycle cycle NN cord-309556-xv3413k1 378 64 Lipid Lipid NNP cord-309556-xv3413k1 378 65 rafts raft NNS cord-309556-xv3413k1 378 66 : : : cord-309556-xv3413k1 378 67 heterogeneity heterogeneity NN cord-309556-xv3413k1 378 68 on on IN cord-309556-xv3413k1 378 69 the the DT cord-309556-xv3413k1 378 70 high high JJ cord-309556-xv3413k1 378 71 seas sea NNS cord-309556-xv3413k1 378 72 SARS SARS NNP cord-309556-xv3413k1 378 73 coronavirus coronavirus NN cord-309556-xv3413k1 378 74 , , , cord-309556-xv3413k1 378 75 but but CC cord-309556-xv3413k1 378 76 not not RB cord-309556-xv3413k1 378 77 human human JJ cord-309556-xv3413k1 378 78 coronavirus coronavirus NN cord-309556-xv3413k1 379 1 NL63 NL63 NNP cord-309556-xv3413k1 379 2 , , , cord-309556-xv3413k1 379 3 utilizes utilize VBZ cord-309556-xv3413k1 379 4 cathepsin cathepsin NN cord-309556-xv3413k1 379 5 L l NN cord-309556-xv3413k1 379 6 to to TO cord-309556-xv3413k1 379 7 infect infect VB cord-309556-xv3413k1 379 8 ACE2-expressing ace2-expressing NN cord-309556-xv3413k1 379 9 cells cell NNS cord-309556-xv3413k1 379 10 Inhibitors inhibitor NNS cord-309556-xv3413k1 379 11 of of IN cord-309556-xv3413k1 379 12 cathepsin cathepsin NN cord-309556-xv3413k1 380 1 L l NN cord-309556-xv3413k1 380 2 prevent prevent VBP cord-309556-xv3413k1 380 3 severe severe JJ cord-309556-xv3413k1 380 4 acute acute JJ cord-309556-xv3413k1 380 5 respiratory respiratory JJ cord-309556-xv3413k1 380 6 syndrome syndrome NN cord-309556-xv3413k1 380 7 coronavirus coronavirus NN cord-309556-xv3413k1 380 8 entry entry NN cord-309556-xv3413k1 380 9 A a DT cord-309556-xv3413k1 380 10 molecular molecular JJ cord-309556-xv3413k1 380 11 cell cell NN cord-309556-xv3413k1 380 12 atlas atlas NN cord-309556-xv3413k1 380 13 of of IN cord-309556-xv3413k1 380 14 the the DT cord-309556-xv3413k1 380 15 human human JJ cord-309556-xv3413k1 380 16 lung lung NN cord-309556-xv3413k1 380 17 from from IN cord-309556-xv3413k1 380 18 single single JJ cord-309556-xv3413k1 380 19 cell cell NN cord-309556-xv3413k1 380 20 RNA rna NN cord-309556-xv3413k1 380 21 sequencing sequence VBG cord-309556-xv3413k1 380 22 Molecular molecular JJ cord-309556-xv3413k1 380 23 pathology pathology NN cord-309556-xv3413k1 380 24 of of IN cord-309556-xv3413k1 380 25 emerging emerge VBG cord-309556-xv3413k1 380 26 coronavirus coronavirus NN cord-309556-xv3413k1 380 27 infections infection NNS cord-309556-xv3413k1 380 28 Clinical clinical JJ cord-309556-xv3413k1 380 29 progression progression NN cord-309556-xv3413k1 380 30 and and CC cord-309556-xv3413k1 380 31 viral viral JJ cord-309556-xv3413k1 380 32 load load NN cord-309556-xv3413k1 380 33 in in IN cord-309556-xv3413k1 380 34 a a DT cord-309556-xv3413k1 380 35 community community NN cord-309556-xv3413k1 380 36 outbreak outbreak NN cord-309556-xv3413k1 380 37 of of IN cord-309556-xv3413k1 380 38 coronavirus coronavirus NN cord-309556-xv3413k1 380 39 - - HYPH cord-309556-xv3413k1 380 40 associated associate VBN cord-309556-xv3413k1 380 41 SARS SARS NNP cord-309556-xv3413k1 380 42 pneumonia pneumonia NN cord-309556-xv3413k1 380 43 : : : cord-309556-xv3413k1 381 1 a a DT cord-309556-xv3413k1 381 2 prospective prospective JJ cord-309556-xv3413k1 381 3 study study NN cord-309556-xv3413k1 381 4 xCell xCell NNP cord-309556-xv3413k1 381 5 : : : cord-309556-xv3413k1 381 6 digitally digitally RB cord-309556-xv3413k1 381 7 portraying portray VBG cord-309556-xv3413k1 381 8 the the DT cord-309556-xv3413k1 381 9 tissue tissue NN cord-309556-xv3413k1 381 10 cellular cellular JJ cord-309556-xv3413k1 381 11 heterogeneity heterogeneity NN cord-309556-xv3413k1 381 12 landscape landscape NN cord-309556-xv3413k1 381 13 Regeneration regeneration NN cord-309556-xv3413k1 381 14 of of IN cord-309556-xv3413k1 381 15 the the DT cord-309556-xv3413k1 381 16 Aging age VBG cord-309556-xv3413k1 381 17 Lung Lung NNP cord-309556-xv3413k1 381 18 : : : cord-309556-xv3413k1 382 1 A a DT cord-309556-xv3413k1 382 2 Mini Mini NNP cord-309556-xv3413k1 382 3 - - NNP cord-309556-xv3413k1 382 4 Review review NN cord-309556-xv3413k1 383 1 The the DT cord-309556-xv3413k1 383 2 aging age VBG cord-309556-xv3413k1 383 3 lung lung NN cord-309556-xv3413k1 383 4 Pulmonary pulmonary JJ cord-309556-xv3413k1 383 5 macrophages macrophage NNS cord-309556-xv3413k1 383 6 : : : cord-309556-xv3413k1 383 7 key key JJ cord-309556-xv3413k1 383 8 players player NNS cord-309556-xv3413k1 383 9 in in IN cord-309556-xv3413k1 383 10 the the DT cord-309556-xv3413k1 383 11 innate innate JJ cord-309556-xv3413k1 383 12 defence defence NN cord-309556-xv3413k1 383 13 of of IN cord-309556-xv3413k1 383 14 the the DT cord-309556-xv3413k1 383 15 airways airways NNPS cord-309556-xv3413k1 384 1 The the DT cord-309556-xv3413k1 384 2 clinical clinical JJ cord-309556-xv3413k1 384 3 pathology pathology NN cord-309556-xv3413k1 384 4 of of IN cord-309556-xv3413k1 384 5 severe severe JJ cord-309556-xv3413k1 384 6 acute acute JJ cord-309556-xv3413k1 384 7 respiratory respiratory JJ cord-309556-xv3413k1 384 8 syndrome syndrome NN cord-309556-xv3413k1 384 9 ( ( -LRB- cord-309556-xv3413k1 384 10 SARS SARS NNP cord-309556-xv3413k1 384 11 ) ) -RRB- cord-309556-xv3413k1 384 12 : : : cord-309556-xv3413k1 385 1 a a DT cord-309556-xv3413k1 385 2 report report NN cord-309556-xv3413k1 385 3 from from IN cord-309556-xv3413k1 385 4 Evolution evolution NN cord-309556-xv3413k1 385 5 of of IN cord-309556-xv3413k1 385 6 pulmonary pulmonary JJ cord-309556-xv3413k1 385 7 pathology pathology NN cord-309556-xv3413k1 385 8 in in IN cord-309556-xv3413k1 385 9 severe severe JJ cord-309556-xv3413k1 385 10 acute acute JJ cord-309556-xv3413k1 385 11 respiratory respiratory JJ cord-309556-xv3413k1 385 12 syndrome syndrome NN cord-309556-xv3413k1 385 13 Regulating regulate VBG cord-309556-xv3413k1 385 14 the the DT cord-309556-xv3413k1 385 15 adaptive adaptive JJ cord-309556-xv3413k1 385 16 immune immune JJ cord-309556-xv3413k1 385 17 response response NN cord-309556-xv3413k1 385 18 to to IN cord-309556-xv3413k1 385 19 respiratory respiratory JJ cord-309556-xv3413k1 385 20 virus virus NN cord-309556-xv3413k1 385 21 infection infection NN cord-309556-xv3413k1 385 22 Regulation regulation NN cord-309556-xv3413k1 385 23 of of IN cord-309556-xv3413k1 385 24 immunological immunological JJ cord-309556-xv3413k1 385 25 homeostasis homeostasis NN cord-309556-xv3413k1 385 26 in in IN cord-309556-xv3413k1 385 27 the the DT cord-309556-xv3413k1 385 28 respiratory respiratory JJ cord-309556-xv3413k1 385 29 tract tract NN cord-309556-xv3413k1 385 30 Alveolar alveolar NN cord-309556-xv3413k1 385 31 Macrophages Macrophages NNPS cord-309556-xv3413k1 385 32 in in IN cord-309556-xv3413k1 385 33 the the DT cord-309556-xv3413k1 385 34 Resolution Resolution NNP cord-309556-xv3413k1 385 35 of of IN cord-309556-xv3413k1 385 36 Inflammation inflammation NN cord-309556-xv3413k1 385 37 , , , cord-309556-xv3413k1 385 38 Tissue tissue NN cord-309556-xv3413k1 385 39 Repair Repair NNP cord-309556-xv3413k1 385 40 , , , cord-309556-xv3413k1 385 41 and and CC cord-309556-xv3413k1 385 42 Tolerance tolerance NN cord-309556-xv3413k1 385 43 to to IN cord-309556-xv3413k1 385 44 Infection Infection NNP cord-309556-xv3413k1 385 45 Antibody antibody NN cord-309556-xv3413k1 385 46 - - HYPH cord-309556-xv3413k1 385 47 dependent dependent JJ cord-309556-xv3413k1 385 48 infection infection NN cord-309556-xv3413k1 385 49 of of IN cord-309556-xv3413k1 385 50 human human JJ cord-309556-xv3413k1 385 51 macrophages macrophage NNS cord-309556-xv3413k1 385 52 by by IN cord-309556-xv3413k1 385 53 severe severe JJ cord-309556-xv3413k1 385 54 acute acute JJ cord-309556-xv3413k1 385 55 respiratory respiratory JJ cord-309556-xv3413k1 385 56 syndrome syndrome NN cord-309556-xv3413k1 385 57 coronavirus coronavirus NN cord-309556-xv3413k1 385 58 Cytokine cytokine NN cord-309556-xv3413k1 385 59 Responses response NNS cord-309556-xv3413k1 385 60 in in IN cord-309556-xv3413k1 385 61 Severe severe JJ cord-309556-xv3413k1 385 62 Acute acute JJ cord-309556-xv3413k1 385 63 Respiratory Respiratory NNP cord-309556-xv3413k1 385 64 Syndrome Syndrome NNP cord-309556-xv3413k1 385 65 Coronavirus Coronavirus NNP cord-309556-xv3413k1 385 66 - - HYPH cord-309556-xv3413k1 385 67 Infected infect VBN cord-309556-xv3413k1 385 68 Macrophages macrophage NNS cord-309556-xv3413k1 386 1 In in IN cord-309556-xv3413k1 386 2 Vitro Vitro NNP cord-309556-xv3413k1 386 3 : : : cord-309556-xv3413k1 387 1 Possible possible JJ cord-309556-xv3413k1 387 2 Relevance relevance NN cord-309556-xv3413k1 387 3 to to IN cord-309556-xv3413k1 387 4 Pathogenesis Pathogenesis NNP cord-309556-xv3413k1 387 5 Alveolar Alveolar NNP cord-309556-xv3413k1 387 6 macrophage macrophage NN cord-309556-xv3413k1 387 7 elimination elimination NN cord-309556-xv3413k1 387 8 in in IN cord-309556-xv3413k1 387 9 vivo vivo NN cord-309556-xv3413k1 387 10 is be VBZ cord-309556-xv3413k1 387 11 associated associate VBN cord-309556-xv3413k1 387 12 with with IN cord-309556-xv3413k1 387 13 an an DT cord-309556-xv3413k1 387 14 increase increase NN cord-309556-xv3413k1 387 15 in in IN cord-309556-xv3413k1 387 16 pulmonary pulmonary JJ cord-309556-xv3413k1 387 17 immune immune JJ cord-309556-xv3413k1 387 18 response response NN cord-309556-xv3413k1 387 19 in in IN cord-309556-xv3413k1 387 20 mice mouse NNS cord-309556-xv3413k1 387 21 Evasion evasion NN cord-309556-xv3413k1 387 22 by by IN cord-309556-xv3413k1 387 23 stealth stealth NN cord-309556-xv3413k1 387 24 : : : cord-309556-xv3413k1 387 25 inefficient inefficient JJ cord-309556-xv3413k1 387 26 immune immune JJ cord-309556-xv3413k1 387 27 activation activation NN cord-309556-xv3413k1 387 28 underlies underlie VBZ cord-309556-xv3413k1 387 29 poor poor JJ cord-309556-xv3413k1 387 30 T T NNP cord-309556-xv3413k1 387 31 cell cell NN cord-309556-xv3413k1 387 32 response response NN cord-309556-xv3413k1 387 33 and and CC cord-309556-xv3413k1 387 34 severe severe JJ cord-309556-xv3413k1 387 35 disease disease NN cord-309556-xv3413k1 387 36 in in IN cord-309556-xv3413k1 387 37 SARS SARS NNP cord-309556-xv3413k1 387 38 - - HYPH cord-309556-xv3413k1 387 39 CoV CoV NNP cord-309556-xv3413k1 387 40 Macrophage macrophage NN cord-309556-xv3413k1 387 41 plasticity plasticity NN cord-309556-xv3413k1 387 42 , , , cord-309556-xv3413k1 387 43 polarization polarization NN cord-309556-xv3413k1 387 44 , , , cord-309556-xv3413k1 387 45 and and CC cord-309556-xv3413k1 387 46 function function VB cord-309556-xv3413k1 387 47 in in IN cord-309556-xv3413k1 387 48 health health NN cord-309556-xv3413k1 387 49 and and CC cord-309556-xv3413k1 387 50 disease disease NN cord-309556-xv3413k1 387 51 T T NNP cord-309556-xv3413k1 387 52 cell cell NN cord-309556-xv3413k1 387 53 responses response NNS cord-309556-xv3413k1 387 54 are be VBP cord-309556-xv3413k1 387 55 required require VBN cord-309556-xv3413k1 387 56 for for IN cord-309556-xv3413k1 387 57 protection protection NN cord-309556-xv3413k1 387 58 from from IN cord-309556-xv3413k1 387 59 clinical clinical JJ cord-309556-xv3413k1 387 60 disease disease NN cord-309556-xv3413k1 387 61 and and CC cord-309556-xv3413k1 387 62 for for IN cord-309556-xv3413k1 387 63 virus virus NN cord-309556-xv3413k1 387 64 clearance clearance NN cord-309556-xv3413k1 387 65 in in IN cord-309556-xv3413k1 387 66 severe severe JJ cord-309556-xv3413k1 387 67 acute acute JJ cord-309556-xv3413k1 387 68 respiratory respiratory JJ cord-309556-xv3413k1 387 69 syndrome syndrome NN cord-309556-xv3413k1 387 70 coronavirus coronavirus NN cord-309556-xv3413k1 387 71 - - HYPH cord-309556-xv3413k1 387 72 infected infect VBN cord-309556-xv3413k1 387 73 mice mouse NNS cord-309556-xv3413k1 388 1 Cellular cellular JJ cord-309556-xv3413k1 388 2 immune immune JJ cord-309556-xv3413k1 388 3 responses response NNS cord-309556-xv3413k1 388 4 to to IN cord-309556-xv3413k1 388 5 severe severe JJ cord-309556-xv3413k1 388 6 acute acute JJ cord-309556-xv3413k1 388 7 respiratory respiratory JJ cord-309556-xv3413k1 388 8 syndrome syndrome NN cord-309556-xv3413k1 388 9 coronavirus coronavirus NN cord-309556-xv3413k1 388 10 ( ( -LRB- cord-309556-xv3413k1 388 11 SARS SARS NNP cord-309556-xv3413k1 388 12 - - HYPH cord-309556-xv3413k1 388 13 CoV CoV NNP cord-309556-xv3413k1 388 14 ) ) -RRB- cord-309556-xv3413k1 388 15 infection infection NN cord-309556-xv3413k1 388 16 in in IN cord-309556-xv3413k1 388 17 senescent senescent JJ cord-309556-xv3413k1 388 18 BALB BALB NNP cord-309556-xv3413k1 388 19 / / SYM cord-309556-xv3413k1 388 20 c c NN cord-309556-xv3413k1 388 21 mice mouse NNS cord-309556-xv3413k1 388 22 : : : cord-309556-xv3413k1 388 23 CD4 CD4 NNP cord-309556-xv3413k1 388 24 + + CC cord-309556-xv3413k1 388 25 T t NN cord-309556-xv3413k1 388 26 cells cell NNS cord-309556-xv3413k1 388 27 are be VBP cord-309556-xv3413k1 388 28 important important JJ cord-309556-xv3413k1 388 29 in in IN cord-309556-xv3413k1 388 30 control control NN cord-309556-xv3413k1 388 31 of of IN cord-309556-xv3413k1 388 32 SARS SARS NNP cord-309556-xv3413k1 388 33 - - HYPH cord-309556-xv3413k1 388 34 CoV CoV NNP cord-309556-xv3413k1 388 35 infection infection NN cord-309556-xv3413k1 388 36 Induction Induction NNP cord-309556-xv3413k1 388 37 of of IN cord-309556-xv3413k1 388 38 Th1 Th1 NNP cord-309556-xv3413k1 388 39 type type NN cord-309556-xv3413k1 388 40 response response NN cord-309556-xv3413k1 388 41 by by IN cord-309556-xv3413k1 388 42 DNA dna NN cord-309556-xv3413k1 388 43 vaccinations vaccination NNS cord-309556-xv3413k1 388 44 with with IN cord-309556-xv3413k1 388 45 N N NNP cord-309556-xv3413k1 388 46 , , , cord-309556-xv3413k1 388 47 M M NNP cord-309556-xv3413k1 388 48 , , , cord-309556-xv3413k1 388 49 and and CC cord-309556-xv3413k1 388 50 E e NN cord-309556-xv3413k1 388 51 genes gene NNS cord-309556-xv3413k1 388 52 against against IN cord-309556-xv3413k1 388 53 SARS SARS NNP cord-309556-xv3413k1 388 54 - - HYPH cord-309556-xv3413k1 388 55 CoV CoV NNP cord-309556-xv3413k1 388 56 in in IN cord-309556-xv3413k1 388 57 mice mouse NNS cord-309556-xv3413k1 389 1 Expanding expand VBG cord-309556-xv3413k1 389 2 roles role NNS cord-309556-xv3413k1 389 3 for for IN cord-309556-xv3413k1 389 4 CD4 CD4 NNP cord-309556-xv3413k1 389 5 + + CC cord-309556-xv3413k1 389 6 T t NN cord-309556-xv3413k1 389 7 cells cell NNS cord-309556-xv3413k1 389 8 in in IN cord-309556-xv3413k1 389 9 immunity immunity NN cord-309556-xv3413k1 389 10 to to IN cord-309556-xv3413k1 389 11 viruses virus NNS cord-309556-xv3413k1 390 1 A a DT cord-309556-xv3413k1 390 2 Kinome Kinome NNP cord-309556-xv3413k1 390 3 - - HYPH cord-309556-xv3413k1 390 4 Wide wide JJ cord-309556-xv3413k1 390 5 Small small JJ cord-309556-xv3413k1 390 6 Interfering Interfering NNP cord-309556-xv3413k1 390 7 RNA RNA NNP cord-309556-xv3413k1 390 8 Screen Screen NNP cord-309556-xv3413k1 390 9 Identifies identify VBZ cord-309556-xv3413k1 390 10 Proviral Proviral NNP cord-309556-xv3413k1 390 11 and and CC cord-309556-xv3413k1 390 12 Antiviral Antiviral NNP cord-309556-xv3413k1 390 13 Host Host NNP cord-309556-xv3413k1 390 14 Factors Factors NNP cord-309556-xv3413k1 390 15 in in IN cord-309556-xv3413k1 390 16 Severe severe JJ cord-309556-xv3413k1 390 17 Acute acute JJ cord-309556-xv3413k1 390 18 Respiratory Respiratory NNP cord-309556-xv3413k1 390 19 Syndrome Syndrome NNP cord-309556-xv3413k1 390 20 Coronavirus Coronavirus NNP cord-309556-xv3413k1 390 21 Replication Replication NNP cord-309556-xv3413k1 390 22 , , , cord-309556-xv3413k1 391 1 Including include VBG cord-309556-xv3413k1 391 2 Double Double NNP cord-309556-xv3413k1 391 3 - - HYPH cord-309556-xv3413k1 391 4 Stranded Stranded NNP cord-309556-xv3413k1 391 5 RNA RNA NNP cord-309556-xv3413k1 391 6 - - HYPH cord-309556-xv3413k1 391 7 Activated Activated NNP cord-309556-xv3413k1 391 8 Protein Protein NNP cord-309556-xv3413k1 391 9 Kinase Kinase NNP cord-309556-xv3413k1 391 10 and and CC cord-309556-xv3413k1 391 11 Early early JJ cord-309556-xv3413k1 391 12 Secretory Secretory NNP cord-309556-xv3413k1 391 13 Pathway Pathway NNP cord-309556-xv3413k1 391 14 Proteins protein NNS cord-309556-xv3413k1 392 1 A a DT cord-309556-xv3413k1 392 2 SARS SARS NNP cord-309556-xv3413k1 392 3 - - HYPH cord-309556-xv3413k1 392 4 CoV-2-Human CoV-2-Human NNP cord-309556-xv3413k1 392 5 Protein Protein NNP cord-309556-xv3413k1 392 6 - - HYPH cord-309556-xv3413k1 392 7 Protein Protein NNP cord-309556-xv3413k1 392 8 Interaction Interaction NNP cord-309556-xv3413k1 392 9 Map Map NNP cord-309556-xv3413k1 392 10 Reveals reveal VBZ cord-309556-xv3413k1 392 11 Drug Drug NNP cord-309556-xv3413k1 392 12 Targets Targets NNPS cord-309556-xv3413k1 392 13 and and CC cord-309556-xv3413k1 392 14 Potential Potential NNP cord-309556-xv3413k1 392 15 Drug Drug NNP cord-309556-xv3413k1 392 16 - - HYPH cord-309556-xv3413k1 392 17 Repurposing repurpose VBG cord-309556-xv3413k1 392 18 Protein Protein NNP cord-309556-xv3413k1 392 19 associated associate VBN cord-309556-xv3413k1 392 20 with with IN cord-309556-xv3413k1 392 21 Myc Myc NNP cord-309556-xv3413k1 392 22 ( ( -LRB- cord-309556-xv3413k1 392 23 PAM PAM NNP cord-309556-xv3413k1 392 24 ) ) -RRB- cord-309556-xv3413k1 392 25 is be VBZ cord-309556-xv3413k1 392 26 a a DT cord-309556-xv3413k1 392 27 potent potent JJ cord-309556-xv3413k1 392 28 inhibitor inhibitor NN cord-309556-xv3413k1 392 29 of of IN cord-309556-xv3413k1 392 30 adenylyl adenylyl NNP cord-309556-xv3413k1 392 31 cyclases cyclases NNP cord-309556-xv3413k1 393 1 PAM PAM NNP cord-309556-xv3413k1 393 2 mediates mediate VBZ cord-309556-xv3413k1 393 3 sustained sustain VBN cord-309556-xv3413k1 393 4 inhibition inhibition NN cord-309556-xv3413k1 393 5 of of IN cord-309556-xv3413k1 393 6 cAMP camp NN cord-309556-xv3413k1 393 7 signaling signaling NN cord-309556-xv3413k1 393 8 by by IN cord-309556-xv3413k1 393 9 sphingosine-1-phosphate sphingosine-1-phosphate NNP cord-309556-xv3413k1 393 10 cAMP camp NN cord-309556-xv3413k1 393 11 Regulation regulation NN cord-309556-xv3413k1 393 12 of of IN cord-309556-xv3413k1 394 1 Airway Airway NNP cord-309556-xv3413k1 394 2 Smooth Smooth NNP cord-309556-xv3413k1 394 3 Muscle Muscle NNP cord-309556-xv3413k1 394 4 Function Function NNP cord-309556-xv3413k1 394 5 SARS SARS NNP cord-309556-xv3413k1 394 6 - - : cord-309556-xv3413k1 394 7 CoV-2 CoV-2 NNP cord-309556-xv3413k1 394 8 launches launch VBZ cord-309556-xv3413k1 394 9 a a DT cord-309556-xv3413k1 394 10 unique unique JJ cord-309556-xv3413k1 394 11 transcriptional transcriptional JJ cord-309556-xv3413k1 394 12 signature signature NN cord-309556-xv3413k1 394 13 from from IN cord-309556-xv3413k1 394 14 in in IN cord-309556-xv3413k1 394 15 vitro vitro FW cord-309556-xv3413k1 394 16 , , , cord-309556-xv3413k1 394 17 ex ex FW cord-309556-xv3413k1 394 18 vivo vivo NN cord-309556-xv3413k1 394 19 , , , cord-309556-xv3413k1 394 20 and and CC cord-309556-xv3413k1 394 21 in in IN cord-309556-xv3413k1 394 22 vivo vivo NNP cord-309556-xv3413k1 394 23 systems system NNS cord-309556-xv3413k1 395 1 A a DT cord-309556-xv3413k1 395 2 microphysiological microphysiological JJ cord-309556-xv3413k1 395 3 model model NN cord-309556-xv3413k1 395 4 of of IN cord-309556-xv3413k1 395 5 the the DT cord-309556-xv3413k1 395 6 bronchial bronchial NNP cord-309556-xv3413k1 395 7 airways airways NNP cord-309556-xv3413k1 395 8 reveals reveal VBZ cord-309556-xv3413k1 395 9 the the DT cord-309556-xv3413k1 395 10 interplay interplay NN cord-309556-xv3413k1 395 11 of of IN cord-309556-xv3413k1 395 12 mechanical mechanical JJ cord-309556-xv3413k1 395 13 and and CC cord-309556-xv3413k1 395 14 biochemical biochemical JJ cord-309556-xv3413k1 395 15 signals signal NNS cord-309556-xv3413k1 395 16 in in IN cord-309556-xv3413k1 395 17 bronchospasm bronchospasm JJ cord-309556-xv3413k1 395 18 Systematic systematic JJ cord-309556-xv3413k1 395 19 and and CC cord-309556-xv3413k1 395 20 integrative integrative JJ cord-309556-xv3413k1 395 21 analysis analysis NN cord-309556-xv3413k1 395 22 of of IN cord-309556-xv3413k1 395 23 large large JJ cord-309556-xv3413k1 395 24 gene gene NN cord-309556-xv3413k1 395 25 lists list NNS cord-309556-xv3413k1 395 26 using use VBG cord-309556-xv3413k1 395 27 DAVID DAVID NNP cord-309556-xv3413k1 395 28 bioinformatics bioinformatics NN cord-309556-xv3413k1 395 29 resources resource NNS cord-309556-xv3413k1 395 30 Integrating integrate VBG cord-309556-xv3413k1 395 31 single single JJ cord-309556-xv3413k1 395 32 - - HYPH cord-309556-xv3413k1 395 33 cell cell NN cord-309556-xv3413k1 395 34 transcriptomic transcriptomic JJ cord-309556-xv3413k1 395 35 data datum NNS cord-309556-xv3413k1 395 36 across across IN cord-309556-xv3413k1 395 37 different different JJ cord-309556-xv3413k1 395 38 conditions condition NNS cord-309556-xv3413k1 395 39 , , , cord-309556-xv3413k1 395 40 technologies technology NNS cord-309556-xv3413k1 395 41 , , , cord-309556-xv3413k1 395 42 and and CC cord-309556-xv3413k1 395 43 species specie VBZ cord-309556-xv3413k1 395 44 Comprehensive Comprehensive NNP cord-309556-xv3413k1 395 45 Integration Integration NNP cord-309556-xv3413k1 395 46 of of IN cord-309556-xv3413k1 395 47 Single Single NNP cord-309556-xv3413k1 395 48 - - HYPH cord-309556-xv3413k1 395 49 Cell Cell NNP cord-309556-xv3413k1 395 50 Data Data NNP cord-309556-xv3413k1 395 51 A a DT cord-309556-xv3413k1 395 52 flexible flexible JJ cord-309556-xv3413k1 395 53 R r NN cord-309556-xv3413k1 395 54 package package NN cord-309556-xv3413k1 395 55 for for IN cord-309556-xv3413k1 395 56 nonnegative nonnegative JJ cord-309556-xv3413k1 395 57 matrix matrix NN cord-309556-xv3413k1 395 58 factorization factorization NN cord-309556-xv3413k1 395 59 Superheat superheat NN cord-309556-xv3413k1 395 60 : : : cord-309556-xv3413k1 395 61 An an DT cord-309556-xv3413k1 395 62 R r NN cord-309556-xv3413k1 395 63 Package package NN cord-309556-xv3413k1 395 64 for for IN cord-309556-xv3413k1 395 65 Creating create VBG cord-309556-xv3413k1 395 66 Beautiful beautiful JJ cord-309556-xv3413k1 395 67 and and CC cord-309556-xv3413k1 395 68 Extendable extendable JJ cord-309556-xv3413k1 395 69 Heatmaps Heatmaps NNP cord-309556-xv3413k1 395 70 for for IN cord-309556-xv3413k1 395 71 Visualizing visualize VBG cord-309556-xv3413k1 395 72 Complex Complex NNP cord-309556-xv3413k1 395 73 Data Data NNP