id sid tid token lemma pos cord-293304-kakxmc14 1 1 key key JJ cord-293304-kakxmc14 1 2 : : : cord-293304-kakxmc14 1 3 cord-293304-kakxmc14 cord-293304-kakxmc14 ADD cord-293304-kakxmc14 1 4 authors author NNS cord-293304-kakxmc14 1 5 : : : cord-293304-kakxmc14 1 6 Achutha Achutha NNP cord-293304-kakxmc14 1 7 , , , cord-293304-kakxmc14 1 8 A. A. NNP cord-293304-kakxmc14 1 9 S. S. NNP cord-293304-kakxmc14 1 10 ; ; : cord-293304-kakxmc14 1 11 Pushpa Pushpa NNP cord-293304-kakxmc14 1 12 , , , cord-293304-kakxmc14 1 13 V. V. NNP cord-293304-kakxmc14 1 14 L. L. NNP cord-293304-kakxmc14 1 15 ; ; : cord-293304-kakxmc14 1 16 Suchitra Suchitra NNP cord-293304-kakxmc14 1 17 , , , cord-293304-kakxmc14 1 18 Surendran Surendran NNP cord-293304-kakxmc14 1 19 title title NN cord-293304-kakxmc14 1 20 : : : cord-293304-kakxmc14 1 21 Theoretical theoretical JJ cord-293304-kakxmc14 1 22 Insights insight NNS cord-293304-kakxmc14 1 23 into into IN cord-293304-kakxmc14 1 24 the the DT cord-293304-kakxmc14 1 25 Anti Anti NNP cord-293304-kakxmc14 1 26 - - NNP cord-293304-kakxmc14 1 27 SARS SARS NNP cord-293304-kakxmc14 1 28 - - HYPH cord-293304-kakxmc14 1 29 CoV-2 CoV-2 NNP cord-293304-kakxmc14 1 30 Activity Activity NNP cord-293304-kakxmc14 1 31 of of IN cord-293304-kakxmc14 1 32 Chloroquine Chloroquine NNP cord-293304-kakxmc14 1 33 and and CC cord-293304-kakxmc14 1 34 Its -PRON- PRP$ cord-293304-kakxmc14 1 35 Analogs Analogs NNP cord-293304-kakxmc14 1 36 and and CC cord-293304-kakxmc14 1 37 In in IN cord-293304-kakxmc14 1 38 Silico Silico NNP cord-293304-kakxmc14 1 39 Screening screening NN cord-293304-kakxmc14 1 40 of of IN cord-293304-kakxmc14 1 41 Main Main NNP cord-293304-kakxmc14 1 42 Protease Protease NNP cord-293304-kakxmc14 1 43 Inhibitors Inhibitors NNP cord-293304-kakxmc14 1 44 date date NN cord-293304-kakxmc14 1 45 : : : cord-293304-kakxmc14 1 46 2020 2020 CD cord-293304-kakxmc14 1 47 - - HYPH cord-293304-kakxmc14 1 48 09 09 CD cord-293304-kakxmc14 1 49 - - SYM cord-293304-kakxmc14 1 50 22 22 CD cord-293304-kakxmc14 1 51 journal journal NN cord-293304-kakxmc14 1 52 : : : cord-293304-kakxmc14 1 53 J J NNP cord-293304-kakxmc14 1 54 Proteome Proteome NNP cord-293304-kakxmc14 1 55 Res res NN cord-293304-kakxmc14 1 56 DOI doi NN cord-293304-kakxmc14 1 57 : : : cord-293304-kakxmc14 2 1 10.1021 10.1021 CD cord-293304-kakxmc14 2 2 / / SYM cord-293304-kakxmc14 2 3 acs.jproteome.0c00683 acs.jproteome.0c00683 NN cord-293304-kakxmc14 2 4 sha sha NNP cord-293304-kakxmc14 2 5 : : : cord-293304-kakxmc14 2 6 4ef32bacf98fffe587c960dba4451dfc533fdf83 4ef32bacf98fffe587c960dba4451dfc533fdf83 NNP cord-293304-kakxmc14 2 7 doc_id doc_id CD cord-293304-kakxmc14 2 8 : : : cord-293304-kakxmc14 2 9 293304 293304 CD cord-293304-kakxmc14 2 10 cord_uid cord_uid NNS cord-293304-kakxmc14 2 11 : : : cord-293304-kakxmc14 3 1 kakxmc14 kakxmc14 CC cord-293304-kakxmc14 4 1 [ [ -LRB- cord-293304-kakxmc14 4 2 Image image NN cord-293304-kakxmc14 4 3 : : : cord-293304-kakxmc14 4 4 see see VB cord-293304-kakxmc14 4 5 text text NN cord-293304-kakxmc14 4 6 ] ] -RRB- cord-293304-kakxmc14 4 7 Corona Corona NNP cord-293304-kakxmc14 4 8 virus virus NN cord-293304-kakxmc14 4 9 disease disease NN cord-293304-kakxmc14 4 10 ( ( -LRB- cord-293304-kakxmc14 4 11 COVID-19 COVID-19 NNP cord-293304-kakxmc14 4 12 ) ) -RRB- cord-293304-kakxmc14 4 13 is be VBZ cord-293304-kakxmc14 4 14 a a DT cord-293304-kakxmc14 4 15 dangerous dangerous JJ cord-293304-kakxmc14 4 16 disease disease NN cord-293304-kakxmc14 4 17 rapidly rapidly RB cord-293304-kakxmc14 4 18 spreading spread VBG cord-293304-kakxmc14 4 19 all all RB cord-293304-kakxmc14 4 20 over over IN cord-293304-kakxmc14 4 21 the the DT cord-293304-kakxmc14 4 22 world world NN cord-293304-kakxmc14 4 23 today today NN cord-293304-kakxmc14 4 24 . . . cord-293304-kakxmc14 5 1 Currently currently RB cord-293304-kakxmc14 5 2 there there EX cord-293304-kakxmc14 5 3 are be VBP cord-293304-kakxmc14 5 4 no no DT cord-293304-kakxmc14 5 5 treatment treatment NN cord-293304-kakxmc14 5 6 options option NNS cord-293304-kakxmc14 5 7 for for IN cord-293304-kakxmc14 5 8 it -PRON- PRP cord-293304-kakxmc14 5 9 . . . cord-293304-kakxmc14 6 1 Drug drug NN cord-293304-kakxmc14 6 2 repurposing repurposing NN cord-293304-kakxmc14 6 3 studies study NNS cord-293304-kakxmc14 6 4 explored explore VBD cord-293304-kakxmc14 6 5 the the DT cord-293304-kakxmc14 6 6 potency potency NN cord-293304-kakxmc14 6 7 of of IN cord-293304-kakxmc14 6 8 antimalarial antimalarial JJ cord-293304-kakxmc14 6 9 drugs drug NNS cord-293304-kakxmc14 6 10 , , , cord-293304-kakxmc14 6 11 chloroquine chloroquine NN cord-293304-kakxmc14 6 12 and and CC cord-293304-kakxmc14 6 13 hydroxychloroquine hydroxychloroquine NN cord-293304-kakxmc14 6 14 , , , cord-293304-kakxmc14 6 15 against against IN cord-293304-kakxmc14 6 16 SARS SARS NNP cord-293304-kakxmc14 6 17 - - HYPH cord-293304-kakxmc14 6 18 CoV-2 CoV-2 NNP cord-293304-kakxmc14 6 19 virus virus NN cord-293304-kakxmc14 6 20 . . . cord-293304-kakxmc14 7 1 These these DT cord-293304-kakxmc14 7 2 drugs drug NNS cord-293304-kakxmc14 7 3 can can MD cord-293304-kakxmc14 7 4 inhibit inhibit VB cord-293304-kakxmc14 7 5 the the DT cord-293304-kakxmc14 7 6 viral viral JJ cord-293304-kakxmc14 7 7 protease protease NN cord-293304-kakxmc14 7 8 , , , cord-293304-kakxmc14 7 9 called call VBN cord-293304-kakxmc14 7 10 chymotrypsin chymotrypsin NNP cord-293304-kakxmc14 7 11 - - HYPH cord-293304-kakxmc14 7 12 like like JJ cord-293304-kakxmc14 7 13 cysteine cysteine NN cord-293304-kakxmc14 7 14 protease protease NN cord-293304-kakxmc14 7 15 , , , cord-293304-kakxmc14 7 16 also also RB cord-293304-kakxmc14 7 17 known know VBN cord-293304-kakxmc14 7 18 as as IN cord-293304-kakxmc14 7 19 Main main JJ cord-293304-kakxmc14 7 20 protease protease NN cord-293304-kakxmc14 7 21 ( ( -LRB- cord-293304-kakxmc14 7 22 3CL(pro 3cl(pro CD cord-293304-kakxmc14 7 23 ) ) -RRB- cord-293304-kakxmc14 7 24 ) ) -RRB- cord-293304-kakxmc14 7 25 ; ; : cord-293304-kakxmc14 7 26 hence hence RB cord-293304-kakxmc14 7 27 , , , cord-293304-kakxmc14 7 28 we -PRON- PRP cord-293304-kakxmc14 7 29 studied study VBD cord-293304-kakxmc14 7 30 the the DT cord-293304-kakxmc14 7 31 binding bind VBG cord-293304-kakxmc14 7 32 efficiencies efficiency NNS cord-293304-kakxmc14 7 33 of of IN cord-293304-kakxmc14 7 34 4-aminoquinoline 4-aminoquinoline CD cord-293304-kakxmc14 7 35 and and CC cord-293304-kakxmc14 7 36 8-aminoquinoline 8-aminoquinoline CD cord-293304-kakxmc14 7 37 analogs analog NNS cord-293304-kakxmc14 7 38 of of IN cord-293304-kakxmc14 7 39 chloroquine chloroquine NN cord-293304-kakxmc14 7 40 . . . cord-293304-kakxmc14 8 1 Six six CD cord-293304-kakxmc14 8 2 compounds compound NNS cord-293304-kakxmc14 8 3 furnished furnish VBN cord-293304-kakxmc14 8 4 better well RBR cord-293304-kakxmc14 8 5 binding bind VBG cord-293304-kakxmc14 8 6 energies energy NNS cord-293304-kakxmc14 8 7 than than IN cord-293304-kakxmc14 8 8 chloroquine chloroquine NN cord-293304-kakxmc14 8 9 and and CC cord-293304-kakxmc14 8 10 hydroxychloroquine hydroxychloroquine NN cord-293304-kakxmc14 8 11 . . . cord-293304-kakxmc14 9 1 The the DT cord-293304-kakxmc14 9 2 interactions interaction NNS cord-293304-kakxmc14 9 3 with with IN cord-293304-kakxmc14 9 4 the the DT cord-293304-kakxmc14 9 5 active active JJ cord-293304-kakxmc14 9 6 site site NN cord-293304-kakxmc14 9 7 residues residue NNS cord-293304-kakxmc14 9 8 especially especially RB cord-293304-kakxmc14 9 9 with with IN cord-293304-kakxmc14 9 10 Cys145 cys145 ADD cord-293304-kakxmc14 9 11 and and CC cord-293304-kakxmc14 9 12 His41 His41 NNP cord-293304-kakxmc14 9 13 , , , cord-293304-kakxmc14 9 14 which which WDT cord-293304-kakxmc14 9 15 are be VBP cord-293304-kakxmc14 9 16 involved involve VBN cord-293304-kakxmc14 9 17 in in IN cord-293304-kakxmc14 9 18 catalytic catalytic JJ cord-293304-kakxmc14 9 19 diad diad VBN cord-293304-kakxmc14 9 20 for for IN cord-293304-kakxmc14 9 21 proteolysis proteolysis NN cord-293304-kakxmc14 9 22 , , , cord-293304-kakxmc14 9 23 make make VB cord-293304-kakxmc14 9 24 these these DT cord-293304-kakxmc14 9 25 compounds compound NNS cord-293304-kakxmc14 9 26 potent potent JJ cord-293304-kakxmc14 9 27 main main JJ cord-293304-kakxmc14 9 28 protease protease NN cord-293304-kakxmc14 9 29 inhibitors inhibitor NNS cord-293304-kakxmc14 9 30 . . . cord-293304-kakxmc14 10 1 A a DT cord-293304-kakxmc14 10 2 regression regression NN cord-293304-kakxmc14 10 3 model model NN cord-293304-kakxmc14 10 4 correlating correlate VBG cord-293304-kakxmc14 10 5 binding bind VBG cord-293304-kakxmc14 10 6 energy energy NN cord-293304-kakxmc14 10 7 and and CC cord-293304-kakxmc14 10 8 the the DT cord-293304-kakxmc14 10 9 molecular molecular JJ cord-293304-kakxmc14 10 10 descriptors descriptor NNS cord-293304-kakxmc14 10 11 for for IN cord-293304-kakxmc14 10 12 chloroquine chloroquine NN cord-293304-kakxmc14 10 13 analogs analog NNS cord-293304-kakxmc14 10 14 was be VBD cord-293304-kakxmc14 10 15 generated generate VBN cord-293304-kakxmc14 10 16 with with IN cord-293304-kakxmc14 10 17 R(2 R(2 NNP cord-293304-kakxmc14 10 18 ) ) -RRB- cord-293304-kakxmc14 10 19 = = NFP cord-293304-kakxmc14 11 1 0.9039 0.9039 CD cord-293304-kakxmc14 11 2 and and CC cord-293304-kakxmc14 11 3 Q(2 Q(2 NNP cord-293304-kakxmc14 11 4 ) ) -RRB- cord-293304-kakxmc14 11 5 = = SYM cord-293304-kakxmc14 11 6 0.8848 0.8848 CD cord-293304-kakxmc14 11 7 . . . cord-293304-kakxmc14 12 1 This this DT cord-293304-kakxmc14 12 2 model model NN cord-293304-kakxmc14 12 3 was be VBD cord-293304-kakxmc14 12 4 used use VBN cord-293304-kakxmc14 12 5 to to TO cord-293304-kakxmc14 12 6 screen screen VB cord-293304-kakxmc14 12 7 new new JJ cord-293304-kakxmc14 12 8 analogs analog NNS cord-293304-kakxmc14 12 9 of of IN cord-293304-kakxmc14 12 10 primaquine primaquine NN cord-293304-kakxmc14 12 11 and and CC cord-293304-kakxmc14 12 12 molecules molecule NNS cord-293304-kakxmc14 12 13 from from IN cord-293304-kakxmc14 12 14 the the DT cord-293304-kakxmc14 12 15 Asinex Asinex NNP cord-293304-kakxmc14 12 16 compound compound NN cord-293304-kakxmc14 12 17 library library NN cord-293304-kakxmc14 12 18 . . . cord-293304-kakxmc14 13 1 The the DT cord-293304-kakxmc14 13 2 docking docking NN cord-293304-kakxmc14 13 3 and and CC cord-293304-kakxmc14 13 4 regression regression NN cord-293304-kakxmc14 13 5 analysis analysis NN cord-293304-kakxmc14 13 6 showed show VBD cord-293304-kakxmc14 13 7 these these DT cord-293304-kakxmc14 13 8 analogs analog NNS cord-293304-kakxmc14 13 9 to to TO cord-293304-kakxmc14 13 10 be be VB cord-293304-kakxmc14 13 11 more more RBR cord-293304-kakxmc14 13 12 potent potent JJ cord-293304-kakxmc14 13 13 inhibitors inhibitor NNS cord-293304-kakxmc14 13 14 of of IN cord-293304-kakxmc14 13 15 3CL(pro 3cl(pro CD cord-293304-kakxmc14 13 16 ) ) -RRB- cord-293304-kakxmc14 13 17 than than IN cord-293304-kakxmc14 13 18 hydroxychloroquine hydroxychloroquine NNP cord-293304-kakxmc14 13 19 and and CC cord-293304-kakxmc14 13 20 primaquine primaquine NNP cord-293304-kakxmc14 13 21 . . . cord-293304-kakxmc14 14 1 The the DT cord-293304-kakxmc14 14 2 molecular molecular JJ cord-293304-kakxmc14 14 3 dynamic dynamic JJ cord-293304-kakxmc14 14 4 simulations simulation NNS cord-293304-kakxmc14 14 5 of of IN cord-293304-kakxmc14 14 6 the the DT cord-293304-kakxmc14 14 7 hits hit NNS cord-293304-kakxmc14 14 8 were be VBD cord-293304-kakxmc14 14 9 carried carry VBN cord-293304-kakxmc14 14 10 out out RP cord-293304-kakxmc14 14 11 to to TO cord-293304-kakxmc14 14 12 determine determine VB cord-293304-kakxmc14 14 13 the the DT cord-293304-kakxmc14 14 14 binding bind VBG cord-293304-kakxmc14 14 15 stabilities stability NNS cord-293304-kakxmc14 14 16 . . . cord-293304-kakxmc14 15 1 Finally finally RB cord-293304-kakxmc14 15 2 , , , cord-293304-kakxmc14 15 3 we -PRON- PRP cord-293304-kakxmc14 15 4 propose propose VBP cord-293304-kakxmc14 15 5 four four CD cord-293304-kakxmc14 15 6 compounds compound NNS cord-293304-kakxmc14 15 7 that that WDT cord-293304-kakxmc14 15 8 show show VBP cord-293304-kakxmc14 15 9 drug drug NN cord-293304-kakxmc14 15 10 likeness likeness NN cord-293304-kakxmc14 15 11 toward toward IN cord-293304-kakxmc14 15 12 SARS SARS NNP cord-293304-kakxmc14 15 13 - - : cord-293304-kakxmc14 15 14 CoV-2 CoV-2 NNP cord-293304-kakxmc14 15 15 that that WDT cord-293304-kakxmc14 15 16 can can MD cord-293304-kakxmc14 15 17 be be VB cord-293304-kakxmc14 15 18 further further RB cord-293304-kakxmc14 15 19 validated validate VBN cord-293304-kakxmc14 15 20 through through RP cord-293304-kakxmc14 15 21 in in IN cord-293304-kakxmc14 15 22 vitro vitro FW cord-293304-kakxmc14 15 23 and and CC cord-293304-kakxmc14 15 24 in in IN cord-293304-kakxmc14 15 25 vivo vivo NNP cord-293304-kakxmc14 15 26 studies study NNS cord-293304-kakxmc14 15 27 . . . cord-293304-kakxmc14 16 1 In in IN cord-293304-kakxmc14 16 2 December December NNP cord-293304-kakxmc14 16 3 2019 2019 CD cord-293304-kakxmc14 16 4 , , , cord-293304-kakxmc14 16 5 patients patient NNS cord-293304-kakxmc14 16 6 were be VBD cord-293304-kakxmc14 16 7 admitted admit VBN cord-293304-kakxmc14 16 8 in in IN cord-293304-kakxmc14 16 9 hospitals hospital NNS cord-293304-kakxmc14 16 10 in in IN cord-293304-kakxmc14 16 11 Wuhan Wuhan NNP cord-293304-kakxmc14 16 12 , , , cord-293304-kakxmc14 16 13 China China NNP cord-293304-kakxmc14 16 14 due due IN cord-293304-kakxmc14 16 15 to to IN cord-293304-kakxmc14 16 16 pneumonia pneumonia NN cord-293304-kakxmc14 16 17 with with IN cord-293304-kakxmc14 16 18 fever fever NN cord-293304-kakxmc14 16 19 and and CC cord-293304-kakxmc14 16 20 other other JJ cord-293304-kakxmc14 16 21 symptoms symptom NNS cord-293304-kakxmc14 16 22 . . . cord-293304-kakxmc14 17 1 1 1 CD cord-293304-kakxmc14 17 2 , , , cord-293304-kakxmc14 17 3 2 2 CD cord-293304-kakxmc14 17 4 In in IN cord-293304-kakxmc14 17 5 January January NNP cord-293304-kakxmc14 17 6 2020 2020 CD cord-293304-kakxmc14 17 7 , , , cord-293304-kakxmc14 17 8 it -PRON- PRP cord-293304-kakxmc14 17 9 was be VBD cord-293304-kakxmc14 17 10 discovered discover VBN cord-293304-kakxmc14 17 11 that that IN cord-293304-kakxmc14 17 12 a a DT cord-293304-kakxmc14 17 13 novel novel JJ cord-293304-kakxmc14 17 14 coronavirus coronavirus NN cord-293304-kakxmc14 17 15 , , , cord-293304-kakxmc14 17 16 which which WDT cord-293304-kakxmc14 17 17 is be VBZ cord-293304-kakxmc14 17 18 similar similar JJ cord-293304-kakxmc14 17 19 to to IN cord-293304-kakxmc14 17 20 SARS SARS NNP cord-293304-kakxmc14 17 21 - - HYPH cord-293304-kakxmc14 17 22 CoV CoV NNP cord-293304-kakxmc14 17 23 and and CC cord-293304-kakxmc14 17 24 MERS MERS NNP cord-293304-kakxmc14 17 25 - - HYPH cord-293304-kakxmc14 17 26 CoV cov NN cord-293304-kakxmc14 17 27 genomes genome NNS cord-293304-kakxmc14 17 28 , , , cord-293304-kakxmc14 17 29 is be VBZ cord-293304-kakxmc14 17 30 responsible responsible JJ cord-293304-kakxmc14 17 31 for for IN cord-293304-kakxmc14 17 32 this this DT cord-293304-kakxmc14 17 33 disease disease NN cord-293304-kakxmc14 17 34 . . . cord-293304-kakxmc14 18 1 2 2 LS cord-293304-kakxmc14 19 1 This this DT cord-293304-kakxmc14 19 2 virus virus NN cord-293304-kakxmc14 19 3 is be VBZ cord-293304-kakxmc14 19 4 named name VBN cord-293304-kakxmc14 19 5 as as IN cord-293304-kakxmc14 19 6 Severe severe JJ cord-293304-kakxmc14 19 7 Acute acute JJ cord-293304-kakxmc14 19 8 Respiratory Respiratory NNP cord-293304-kakxmc14 19 9 Syndrome Syndrome NNP cord-293304-kakxmc14 19 10 Corona Corona NNP cord-293304-kakxmc14 19 11 Virus-2 Virus-2 NNP cord-293304-kakxmc14 19 12 ( ( -LRB- cord-293304-kakxmc14 19 13 SARS SARS NNP cord-293304-kakxmc14 19 14 - - HYPH cord-293304-kakxmc14 19 15 CoV-2 CoV-2 NNP cord-293304-kakxmc14 19 16 ) ) -RRB- cord-293304-kakxmc14 19 17 and and CC cord-293304-kakxmc14 19 18 the the DT cord-293304-kakxmc14 19 19 disease disease NN cord-293304-kakxmc14 19 20 is be VBZ cord-293304-kakxmc14 19 21 called call VBN cord-293304-kakxmc14 19 22 Corona Corona NNP cord-293304-kakxmc14 19 23 Virus Virus NNP cord-293304-kakxmc14 19 24 Disease-2019 Disease-2019 NNP cord-293304-kakxmc14 19 25 . . . cord-293304-kakxmc14 20 1 3 3 CD cord-293304-kakxmc14 20 2 , , , cord-293304-kakxmc14 20 3 4 4 CD cord-293304-kakxmc14 21 1 It -PRON- PRP cord-293304-kakxmc14 21 2 was be VBD cord-293304-kakxmc14 21 3 declared declare VBN cord-293304-kakxmc14 21 4 as as IN cord-293304-kakxmc14 21 5 pandemic pandemic NN cord-293304-kakxmc14 21 6 on on IN cord-293304-kakxmc14 21 7 March March NNP cord-293304-kakxmc14 21 8 11 11 CD cord-293304-kakxmc14 21 9 by by IN cord-293304-kakxmc14 21 10 the the DT cord-293304-kakxmc14 21 11 World World NNP cord-293304-kakxmc14 21 12 Health Health NNP cord-293304-kakxmc14 21 13 Organization Organization NNP cord-293304-kakxmc14 21 14 ( ( -LRB- cord-293304-kakxmc14 21 15 WHO who WP cord-293304-kakxmc14 21 16 ) ) -RRB- cord-293304-kakxmc14 21 17 . . . cord-293304-kakxmc14 22 1 5 5 LS cord-293304-kakxmc14 23 1 As as IN cord-293304-kakxmc14 23 2 of of IN cord-293304-kakxmc14 23 3 September September NNP cord-293304-kakxmc14 23 4 1 1 CD cord-293304-kakxmc14 23 5 , , , cord-293304-kakxmc14 23 6 2020 2020 CD cord-293304-kakxmc14 23 7 , , , cord-293304-kakxmc14 23 8 there there EX cord-293304-kakxmc14 23 9 are be VBP cord-293304-kakxmc14 23 10 25,327,098 25,327,098 CD cord-293304-kakxmc14 23 11 confirmed confirm VBN cord-293304-kakxmc14 23 12 cases case NNS cord-293304-kakxmc14 23 13 with with IN cord-293304-kakxmc14 23 14 848,255 848,255 CD cord-293304-kakxmc14 23 15 deaths death NNS cord-293304-kakxmc14 23 16 worldwide worldwide RB cord-293304-kakxmc14 23 17 according accord VBG cord-293304-kakxmc14 23 18 to to IN cord-293304-kakxmc14 23 19 WHO who WP cord-293304-kakxmc14 23 20 reports report VBZ cord-293304-kakxmc14 23 21 . . . cord-293304-kakxmc14 24 1 6 6 CD cord-293304-kakxmc14 24 2 Coronavirus Coronavirus NNP cord-293304-kakxmc14 24 3 is be VBZ cord-293304-kakxmc14 24 4 a a DT cord-293304-kakxmc14 24 5 single single RB cord-293304-kakxmc14 24 6 - - HYPH cord-293304-kakxmc14 24 7 stranded strand VBN cord-293304-kakxmc14 24 8 positive positive JJ cord-293304-kakxmc14 24 9 sense sense NN cord-293304-kakxmc14 24 10 RNA RNA NNP cord-293304-kakxmc14 24 11 with with IN cord-293304-kakxmc14 24 12 a a DT cord-293304-kakxmc14 24 13 membrane membrane NN cord-293304-kakxmc14 24 14 envelope envelope NN cord-293304-kakxmc14 24 15 composed compose VBN cord-293304-kakxmc14 24 16 of of IN cord-293304-kakxmc14 24 17 four four CD cord-293304-kakxmc14 24 18 types type NNS cord-293304-kakxmc14 24 19 of of IN cord-293304-kakxmc14 24 20 viruses virus NNS cord-293304-kakxmc14 24 21 : : : cord-293304-kakxmc14 24 22 α α NNP cord-293304-kakxmc14 24 23 , , , cord-293304-kakxmc14 24 24 β β NN cord-293304-kakxmc14 24 25 , , , cord-293304-kakxmc14 24 26 γ γ NNP cord-293304-kakxmc14 24 27 , , , cord-293304-kakxmc14 24 28 and and CC cord-293304-kakxmc14 24 29 δ δ NN cord-293304-kakxmc14 24 30 coronaviruses coronaviruse NNS cord-293304-kakxmc14 24 31 . . . cord-293304-kakxmc14 25 1 SARS SARS NNP cord-293304-kakxmc14 25 2 - - HYPH cord-293304-kakxmc14 25 3 CoV-2 CoV-2 NNP cord-293304-kakxmc14 25 4 belongs belong VBZ cord-293304-kakxmc14 25 5 to to IN cord-293304-kakxmc14 25 6 β β NN cord-293304-kakxmc14 25 7 - - HYPH cord-293304-kakxmc14 25 8 coronavirus coronavirus NN cord-293304-kakxmc14 25 9 family family NN cord-293304-kakxmc14 25 10 . . . cord-293304-kakxmc14 26 1 5 5 CD cord-293304-kakxmc14 26 2 , , , cord-293304-kakxmc14 26 3 7 7 CD cord-293304-kakxmc14 27 1 Its -PRON- PRP$ cord-293304-kakxmc14 27 2 genome genome NN cord-293304-kakxmc14 27 3 encodes encode VBZ cord-293304-kakxmc14 27 4 for for IN cord-293304-kakxmc14 27 5 structural structural JJ cord-293304-kakxmc14 27 6 proteins protein NNS cord-293304-kakxmc14 27 7 mainly mainly RB cord-293304-kakxmc14 27 8 spike spike VBP cord-293304-kakxmc14 27 9 glycoprotein glycoprotein NN cord-293304-kakxmc14 27 10 ( ( -LRB- cord-293304-kakxmc14 27 11 S S NNP cord-293304-kakxmc14 27 12 ) ) -RRB- cord-293304-kakxmc14 27 13 , , , cord-293304-kakxmc14 27 14 envelope envelope NN cord-293304-kakxmc14 27 15 glycoprotein glycoprotein NN cord-293304-kakxmc14 27 16 ( ( -LRB- cord-293304-kakxmc14 27 17 E E NNP cord-293304-kakxmc14 27 18 ) ) -RRB- cord-293304-kakxmc14 27 19 , , , cord-293304-kakxmc14 27 20 membrane membrane NN cord-293304-kakxmc14 27 21 glycoprotein glycoprotein NN cord-293304-kakxmc14 27 22 ( ( -LRB- cord-293304-kakxmc14 27 23 M M NNP cord-293304-kakxmc14 27 24 ) ) -RRB- cord-293304-kakxmc14 27 25 , , , cord-293304-kakxmc14 27 26 nucleocapsid nucleocapsid NNP cord-293304-kakxmc14 27 27 protein protein NNP cord-293304-kakxmc14 27 28 ( ( -LRB- cord-293304-kakxmc14 27 29 N N NNP cord-293304-kakxmc14 27 30 ) ) -RRB- cord-293304-kakxmc14 27 31 , , , cord-293304-kakxmc14 27 32 and and CC cord-293304-kakxmc14 27 33 nonstructural nonstructural JJ cord-293304-kakxmc14 27 34 proteins protein NNS cord-293304-kakxmc14 27 35 consisting consist VBG cord-293304-kakxmc14 27 36 of of IN cord-293304-kakxmc14 27 37 chymotrypsin chymotrypsin JJ cord-293304-kakxmc14 27 38 - - HYPH cord-293304-kakxmc14 27 39 like like JJ cord-293304-kakxmc14 27 40 cysteine cysteine NN cord-293304-kakxmc14 27 41 protease protease NN cord-293304-kakxmc14 27 42 also also RB cord-293304-kakxmc14 27 43 known know VBN cord-293304-kakxmc14 27 44 as as IN cord-293304-kakxmc14 27 45 Main main JJ cord-293304-kakxmc14 27 46 protease protease NN cord-293304-kakxmc14 27 47 ( ( -LRB- cord-293304-kakxmc14 27 48 3CL 3CL NNP cord-293304-kakxmc14 27 49 pro pro JJ cord-293304-kakxmc14 27 50 ) ) -RRB- cord-293304-kakxmc14 27 51 and and CC cord-293304-kakxmc14 27 52 papain papain NN cord-293304-kakxmc14 27 53 - - HYPH cord-293304-kakxmc14 27 54 like like JJ cord-293304-kakxmc14 27 55 protease protease NN cord-293304-kakxmc14 27 56 ( ( -LRB- cord-293304-kakxmc14 27 57 PL pl NN cord-293304-kakxmc14 27 58 pro pro FW cord-293304-kakxmc14 27 59 ) ) -RRB- cord-293304-kakxmc14 27 60 . . . cord-293304-kakxmc14 28 1 1 1 CD cord-293304-kakxmc14 28 2 , , , cord-293304-kakxmc14 28 3 8 8 CD cord-293304-kakxmc14 28 4 , , , cord-293304-kakxmc14 28 5 9 9 CD cord-293304-kakxmc14 29 1 The the DT cord-293304-kakxmc14 29 2 viral viral JJ cord-293304-kakxmc14 29 3 RNA RNA NNP cord-293304-kakxmc14 29 4 is be VBZ cord-293304-kakxmc14 29 5 released release VBN cord-293304-kakxmc14 29 6 to to IN cord-293304-kakxmc14 29 7 the the DT cord-293304-kakxmc14 29 8 host host NN cord-293304-kakxmc14 29 9 cell cell NN cord-293304-kakxmc14 29 10 , , , cord-293304-kakxmc14 29 11 which which WDT cord-293304-kakxmc14 29 12 is be VBZ cord-293304-kakxmc14 29 13 then then RB cord-293304-kakxmc14 29 14 translated translate VBN cord-293304-kakxmc14 29 15 to to IN cord-293304-kakxmc14 29 16 polyproteins polyprotein NNS cord-293304-kakxmc14 29 17 inside inside IN cord-293304-kakxmc14 29 18 the the DT cord-293304-kakxmc14 29 19 cell cell NN cord-293304-kakxmc14 29 20 . . . cord-293304-kakxmc14 30 1 These these DT cord-293304-kakxmc14 30 2 viral viral JJ cord-293304-kakxmc14 30 3 polyproteins polyprotein NNS cord-293304-kakxmc14 30 4 are be VBP cord-293304-kakxmc14 30 5 cleaved cleave VBN cord-293304-kakxmc14 30 6 to to IN cord-293304-kakxmc14 30 7 functional functional JJ cord-293304-kakxmc14 30 8 proteins protein NNS cord-293304-kakxmc14 30 9 by by IN cord-293304-kakxmc14 30 10 proteolysis proteolysis NN cord-293304-kakxmc14 30 11 , , , cord-293304-kakxmc14 30 12 which which WDT cord-293304-kakxmc14 30 13 is be VBZ cord-293304-kakxmc14 30 14 catalyzed catalyze VBN cord-293304-kakxmc14 30 15 by by IN cord-293304-kakxmc14 30 16 3CL 3cl CD cord-293304-kakxmc14 30 17 pro pro JJ cord-293304-kakxmc14 30 18 and and CC cord-293304-kakxmc14 30 19 PL PL NNP cord-293304-kakxmc14 30 20 pro pro NN cord-293304-kakxmc14 30 21 1,8,9 1,8,9 CD cord-293304-kakxmc14 30 22 . . . cord-293304-kakxmc14 31 1 Since since IN cord-293304-kakxmc14 31 2 the the DT cord-293304-kakxmc14 31 3 main main JJ cord-293304-kakxmc14 31 4 protease protease NN cord-293304-kakxmc14 31 5 or or CC cord-293304-kakxmc14 31 6 3CL 3cl NN cord-293304-kakxmc14 31 7 pro pro JJ cord-293304-kakxmc14 31 8 cleaves cleave VBZ cord-293304-kakxmc14 31 9 at at IN cord-293304-kakxmc14 31 10 11 11 CD cord-293304-kakxmc14 31 11 sites site NNS cord-293304-kakxmc14 31 12 of of IN cord-293304-kakxmc14 31 13 the the DT cord-293304-kakxmc14 31 14 polyprotein polyprotein NN cord-293304-kakxmc14 31 15 to to TO cord-293304-kakxmc14 31 16 produce produce VB cord-293304-kakxmc14 31 17 smaller small JJR cord-293304-kakxmc14 31 18 proteins protein NNS cord-293304-kakxmc14 31 19 for for IN cord-293304-kakxmc14 31 20 viral viral JJ cord-293304-kakxmc14 31 21 replication replication NN cord-293304-kakxmc14 31 22 and and CC cord-293304-kakxmc14 31 23 because because IN cord-293304-kakxmc14 31 24 of of IN cord-293304-kakxmc14 31 25 its -PRON- PRP$ cord-293304-kakxmc14 31 26 nonsimilarity nonsimilarity NN cord-293304-kakxmc14 31 27 with with IN cord-293304-kakxmc14 31 28 human human JJ cord-293304-kakxmc14 31 29 proteins protein NNS cord-293304-kakxmc14 31 30 , , , cord-293304-kakxmc14 31 31 3CL 3CL NNP cord-293304-kakxmc14 31 32 pro pro NNP cord-293304-kakxmc14 31 33 is be VBZ cord-293304-kakxmc14 31 34 a a DT cord-293304-kakxmc14 31 35 potential potential JJ cord-293304-kakxmc14 31 36 target target NN cord-293304-kakxmc14 31 37 in in IN cord-293304-kakxmc14 31 38 anti anti JJ cord-293304-kakxmc14 31 39 - - JJ cord-293304-kakxmc14 31 40 COVID-19 covid-19 JJ cord-293304-kakxmc14 31 41 drug drug NN cord-293304-kakxmc14 31 42 design design NN cord-293304-kakxmc14 31 43 . . . cord-293304-kakxmc14 32 1 8 8 CD cord-293304-kakxmc14 32 2 , , , cord-293304-kakxmc14 32 3 10 10 CD cord-293304-kakxmc14 33 1 The the DT cord-293304-kakxmc14 33 2 main main JJ cord-293304-kakxmc14 33 3 protease protease NN cord-293304-kakxmc14 33 4 of of IN cord-293304-kakxmc14 33 5 SARS SARS NNP cord-293304-kakxmc14 33 6 - - HYPH cord-293304-kakxmc14 33 7 CoV-2 CoV-2 NNP cord-293304-kakxmc14 33 8 has have VBZ cord-293304-kakxmc14 33 9 a a DT cord-293304-kakxmc14 33 10 Cys Cys NNP cord-293304-kakxmc14 33 11 - - HYPH cord-293304-kakxmc14 33 12 His -PRON- PRP$ cord-293304-kakxmc14 33 13 catalytic catalytic JJ cord-293304-kakxmc14 33 14 diad diad NNS cord-293304-kakxmc14 33 15 involving involve VBG cord-293304-kakxmc14 33 16 Cys145 cys145 CD cord-293304-kakxmc14 33 17 and and CC cord-293304-kakxmc14 33 18 His41 His41 NNP cord-293304-kakxmc14 33 19 and and CC cord-293304-kakxmc14 33 20 has have VBZ cord-293304-kakxmc14 33 21 four four CD cord-293304-kakxmc14 33 22 conserved conserve VBN cord-293304-kakxmc14 33 23 binding bind VBG cord-293304-kakxmc14 33 24 subsites subsite NNS cord-293304-kakxmc14 33 25 S1 s1 NN cord-293304-kakxmc14 33 26 , , , cord-293304-kakxmc14 33 27 S2 S2 NNP cord-293304-kakxmc14 33 28 , , , cord-293304-kakxmc14 33 29 S4 S4 NNP cord-293304-kakxmc14 33 30 , , , cord-293304-kakxmc14 33 31 and and CC cord-293304-kakxmc14 33 32 S1′. S1′. VBZ cord-293304-kakxmc14 33 33 Main main JJ cord-293304-kakxmc14 33 34 chains chain NNS cord-293304-kakxmc14 33 35 of of IN cord-293304-kakxmc14 33 36 Cys145 cys145 CD cord-293304-kakxmc14 33 37 , , , cord-293304-kakxmc14 33 38 Phe140 phe140 CD cord-293304-kakxmc14 33 39 , , , cord-293304-kakxmc14 33 40 and and CC cord-293304-kakxmc14 33 41 Leu141 leu141 CD cord-293304-kakxmc14 33 42 and and CC cord-293304-kakxmc14 33 43 side side NN cord-293304-kakxmc14 33 44 chains chain NNS cord-293304-kakxmc14 33 45 of of IN cord-293304-kakxmc14 33 46 Asn142 asn142 CD cord-293304-kakxmc14 33 47 , , , cord-293304-kakxmc14 33 48 Glu166 glu166 JJ cord-293304-kakxmc14 33 49 , , , cord-293304-kakxmc14 33 50 His163 his163 CD cord-293304-kakxmc14 33 51 , , , cord-293304-kakxmc14 33 52 and and CC cord-293304-kakxmc14 33 53 His172 his172 DT cord-293304-kakxmc14 33 54 residues residue NNS cord-293304-kakxmc14 33 55 are be VBP cord-293304-kakxmc14 33 56 present present JJ cord-293304-kakxmc14 33 57 in in IN cord-293304-kakxmc14 33 58 the the DT cord-293304-kakxmc14 33 59 S1 s1 NN cord-293304-kakxmc14 33 60 subsite subsite NN cord-293304-kakxmc14 33 61 . . . cord-293304-kakxmc14 34 1 The the DT cord-293304-kakxmc14 34 2 side side NN cord-293304-kakxmc14 34 3 chains chain NNS cord-293304-kakxmc14 34 4 of of IN cord-293304-kakxmc14 34 5 His41 His41 NNP cord-293304-kakxmc14 34 6 , , , cord-293304-kakxmc14 34 7 Met49 Met49 NNP cord-293304-kakxmc14 34 8 , , , cord-293304-kakxmc14 34 9 Tyr54 Tyr54 NNP cord-293304-kakxmc14 34 10 , , , cord-293304-kakxmc14 34 11 and and CC cord-293304-kakxmc14 34 12 Met165 met165 NN cord-293304-kakxmc14 34 13 , , , cord-293304-kakxmc14 34 14 along along IN cord-293304-kakxmc14 34 15 with with IN cord-293304-kakxmc14 34 16 the the DT cord-293304-kakxmc14 34 17 alkyl alkyl JJ cord-293304-kakxmc14 34 18 side side NN cord-293304-kakxmc14 34 19 chain chain NN cord-293304-kakxmc14 34 20 of of IN cord-293304-kakxmc14 35 1 Asp187 Asp187 NFP cord-293304-kakxmc14 35 2 forms form VBZ cord-293304-kakxmc14 35 3 the the DT cord-293304-kakxmc14 35 4 S2 S2 NNP cord-293304-kakxmc14 35 5 subsite subsite NN cord-293304-kakxmc14 35 6 . . . cord-293304-kakxmc14 36 1 The the DT cord-293304-kakxmc14 36 2 S4 S4 NNP cord-293304-kakxmc14 36 3 subsite subsite NN cord-293304-kakxmc14 36 4 consists consist VBZ cord-293304-kakxmc14 36 5 of of IN cord-293304-kakxmc14 36 6 Met165 met165 CD cord-293304-kakxmc14 36 7 , , , cord-293304-kakxmc14 36 8 Leu167 leu167 CD cord-293304-kakxmc14 36 9 , , , cord-293304-kakxmc14 36 10 Phe185 phe185 CD cord-293304-kakxmc14 36 11 , , , cord-293304-kakxmc14 36 12 and and CC cord-293304-kakxmc14 36 13 Gln192 gln192 CD cord-293304-kakxmc14 36 14 side side NN cord-293304-kakxmc14 36 15 chain chain NN cord-293304-kakxmc14 36 16 residues residue NNS cord-293304-kakxmc14 36 17 and and CC cord-293304-kakxmc14 36 18 the the DT cord-293304-kakxmc14 36 19 main main JJ cord-293304-kakxmc14 36 20 chain chain NN cord-293304-kakxmc14 36 21 of of IN cord-293304-kakxmc14 36 22 Gln189 gln189 ADD cord-293304-kakxmc14 36 23 . . . cord-293304-kakxmc14 37 1 S1′ S1′ NNP cord-293304-kakxmc14 37 2 includes include VBZ cord-293304-kakxmc14 37 3 Thr24 Thr24 NNP cord-293304-kakxmc14 37 4 and and CC cord-293304-kakxmc14 37 5 Thr25 Thr25 NNP cord-293304-kakxmc14 37 6 . . . cord-293304-kakxmc14 38 1 Therefore therefore RB cord-293304-kakxmc14 38 2 , , , cord-293304-kakxmc14 38 3 a a DT cord-293304-kakxmc14 38 4 molecule molecule NN cord-293304-kakxmc14 38 5 to to TO cord-293304-kakxmc14 38 6 show show VB cord-293304-kakxmc14 38 7 3CL 3CL NNP cord-293304-kakxmc14 38 8 pro pro JJ cord-293304-kakxmc14 38 9 inhibitory inhibitory JJ cord-293304-kakxmc14 38 10 property property NN cord-293304-kakxmc14 38 11 should should MD cord-293304-kakxmc14 38 12 interact interact VB cord-293304-kakxmc14 38 13 with with IN cord-293304-kakxmc14 38 14 one one CD cord-293304-kakxmc14 38 15 or or CC cord-293304-kakxmc14 38 16 more more JJR cord-293304-kakxmc14 38 17 residues residue NNS cord-293304-kakxmc14 38 18 among among IN cord-293304-kakxmc14 38 19 these these DT cord-293304-kakxmc14 38 20 amino amino NN cord-293304-kakxmc14 38 21 acids acid NNS cord-293304-kakxmc14 38 22 . . . cord-293304-kakxmc14 39 1 Also also RB cord-293304-kakxmc14 39 2 , , , cord-293304-kakxmc14 39 3 the the DT cord-293304-kakxmc14 39 4 inhibitory inhibitory JJ cord-293304-kakxmc14 39 5 action action NN cord-293304-kakxmc14 39 6 can can MD cord-293304-kakxmc14 39 7 be be VB cord-293304-kakxmc14 39 8 assumed assume VBN cord-293304-kakxmc14 39 9 to to TO cord-293304-kakxmc14 39 10 enhance enhance VB cord-293304-kakxmc14 39 11 if if IN cord-293304-kakxmc14 39 12 they -PRON- PRP cord-293304-kakxmc14 39 13 interact interact VBP cord-293304-kakxmc14 39 14 with with IN cord-293304-kakxmc14 39 15 Cys145 cys145 ADD cord-293304-kakxmc14 39 16 or or CC cord-293304-kakxmc14 39 17 His41 His41 NNP cord-293304-kakxmc14 39 18 , , , cord-293304-kakxmc14 39 19 which which WDT cord-293304-kakxmc14 39 20 is be VBZ cord-293304-kakxmc14 39 21 involved involve VBN cord-293304-kakxmc14 39 22 in in IN cord-293304-kakxmc14 39 23 the the DT cord-293304-kakxmc14 39 24 catalytic catalytic JJ cord-293304-kakxmc14 39 25 diad diad NNS cord-293304-kakxmc14 39 26 of of IN cord-293304-kakxmc14 39 27 Main main JJ cord-293304-kakxmc14 39 28 protease protease NN cord-293304-kakxmc14 39 29 10 10 CD cord-293304-kakxmc14 40 1 ( ( -LRB- cord-293304-kakxmc14 40 2 Figure figure NN cord-293304-kakxmc14 40 3 1 1 CD cord-293304-kakxmc14 40 4 ) ) -RRB- cord-293304-kakxmc14 40 5 . . . cord-293304-kakxmc14 41 1 Cysteine cysteine NN cord-293304-kakxmc14 41 2 acts act VBZ cord-293304-kakxmc14 41 3 as as IN cord-293304-kakxmc14 41 4 a a DT cord-293304-kakxmc14 41 5 nucleophile nucleophile NN cord-293304-kakxmc14 41 6 and and CC cord-293304-kakxmc14 41 7 Histidine Histidine NNP cord-293304-kakxmc14 41 8 as as IN cord-293304-kakxmc14 41 9 an an DT cord-293304-kakxmc14 41 10 acid acid NN cord-293304-kakxmc14 41 11 / / SYM cord-293304-kakxmc14 41 12 base base NN cord-293304-kakxmc14 41 13 catalyst catalyst NN cord-293304-kakxmc14 41 14 in in IN cord-293304-kakxmc14 41 15 this this DT cord-293304-kakxmc14 41 16 catalytic catalytic JJ cord-293304-kakxmc14 41 17 reaction reaction NN cord-293304-kakxmc14 41 18 . . . cord-293304-kakxmc14 42 1 9 9 CD cord-293304-kakxmc14 42 2 , , , cord-293304-kakxmc14 42 3 11 11 CD cord-293304-kakxmc14 42 4 Currently currently RB cord-293304-kakxmc14 42 5 there there EX cord-293304-kakxmc14 42 6 are be VBP cord-293304-kakxmc14 42 7 no no DT cord-293304-kakxmc14 42 8 specific specific JJ cord-293304-kakxmc14 42 9 approved approve VBN cord-293304-kakxmc14 42 10 treatment treatment NN cord-293304-kakxmc14 42 11 options option NNS cord-293304-kakxmc14 42 12 for for IN cord-293304-kakxmc14 42 13 COVID-19 COVID-19 NNP cord-293304-kakxmc14 42 14 . . . cord-293304-kakxmc14 43 1 Researches research NNS cord-293304-kakxmc14 43 2 are be VBP cord-293304-kakxmc14 43 3 in in IN cord-293304-kakxmc14 43 4 search search NN cord-293304-kakxmc14 43 5 of of IN cord-293304-kakxmc14 43 6 vaccine vaccine NN cord-293304-kakxmc14 43 7 development development NN cord-293304-kakxmc14 43 8 , , , cord-293304-kakxmc14 43 9 druggable druggable JJ cord-293304-kakxmc14 43 10 small small JJ cord-293304-kakxmc14 43 11 molecule molecule NN cord-293304-kakxmc14 43 12 , , , cord-293304-kakxmc14 43 13 monoclonal monoclonal JJ cord-293304-kakxmc14 43 14 antibodies antibody NNS cord-293304-kakxmc14 43 15 and and CC cord-293304-kakxmc14 43 16 cell cell NN cord-293304-kakxmc14 43 17 - - HYPH cord-293304-kakxmc14 43 18 based base VBN cord-293304-kakxmc14 43 19 therapies therapy NNS cord-293304-kakxmc14 43 20 . . . cord-293304-kakxmc14 44 1 12 12 CD cord-293304-kakxmc14 44 2 Several several JJ cord-293304-kakxmc14 44 3 drug drug NN cord-293304-kakxmc14 44 4 repurposing repurposing NN cord-293304-kakxmc14 44 5 studies study NNS cord-293304-kakxmc14 44 6 have have VBP cord-293304-kakxmc14 44 7 been be VBN cord-293304-kakxmc14 44 8 conducted conduct VBN cord-293304-kakxmc14 44 9 so so RB cord-293304-kakxmc14 44 10 far far RB cord-293304-kakxmc14 44 11 , , , cord-293304-kakxmc14 44 12 and and CC cord-293304-kakxmc14 44 13 many many JJ cord-293304-kakxmc14 44 14 of of IN cord-293304-kakxmc14 44 15 them -PRON- PRP cord-293304-kakxmc14 44 16 gave give VBD cord-293304-kakxmc14 44 17 positive positive JJ cord-293304-kakxmc14 44 18 results result NNS cord-293304-kakxmc14 44 19 . . . cord-293304-kakxmc14 45 1 The the DT cord-293304-kakxmc14 45 2 4-aminoquinolines 4-aminoquinolines CD cord-293304-kakxmc14 45 3 , , , cord-293304-kakxmc14 45 4 chloroquine chloroquine NN cord-293304-kakxmc14 45 5 ( ( -LRB- cord-293304-kakxmc14 45 6 CQ CQ NNP cord-293304-kakxmc14 45 7 ) ) -RRB- cord-293304-kakxmc14 45 8 , , , cord-293304-kakxmc14 45 9 and and CC cord-293304-kakxmc14 45 10 its -PRON- PRP$ cord-293304-kakxmc14 45 11 hydroxyl hydroxyl NN cord-293304-kakxmc14 45 12 analog analog NN cord-293304-kakxmc14 45 13 hydroxychloroquine hydroxychloroquine NNP cord-293304-kakxmc14 45 14 ( ( -LRB- cord-293304-kakxmc14 45 15 HCQ HCQ NNP cord-293304-kakxmc14 45 16 ) ) -RRB- cord-293304-kakxmc14 45 17 have have VBP cord-293304-kakxmc14 45 18 been be VBN cord-293304-kakxmc14 45 19 found find VBN cord-293304-kakxmc14 45 20 to to TO cord-293304-kakxmc14 45 21 disrupt disrupt VB cord-293304-kakxmc14 45 22 the the DT cord-293304-kakxmc14 45 23 viral viral JJ cord-293304-kakxmc14 45 24 replication replication NN cord-293304-kakxmc14 45 25 and and CC cord-293304-kakxmc14 45 26 infectivity infectivity NN cord-293304-kakxmc14 45 27 . . . cord-293304-kakxmc14 46 1 13 13 CD cord-293304-kakxmc14 47 1 Their -PRON- PRP$ cord-293304-kakxmc14 47 2 broad broad JJ cord-293304-kakxmc14 47 3 spectrum spectrum NN cord-293304-kakxmc14 47 4 of of IN cord-293304-kakxmc14 47 5 activity activity NN cord-293304-kakxmc14 47 6 as as IN cord-293304-kakxmc14 47 7 antibacterial antibacterial JJ cord-293304-kakxmc14 47 8 , , , cord-293304-kakxmc14 47 9 antiviral antiviral JJ cord-293304-kakxmc14 47 10 , , , cord-293304-kakxmc14 47 11 and and CC cord-293304-kakxmc14 47 12 antifungal antifungal JJ cord-293304-kakxmc14 47 13 infections infection NNS cord-293304-kakxmc14 47 14 has have VBZ cord-293304-kakxmc14 47 15 also also RB cord-293304-kakxmc14 47 16 been be VBN cord-293304-kakxmc14 47 17 reported report VBN cord-293304-kakxmc14 47 18 . . . cord-293304-kakxmc14 48 1 15 15 CD cord-293304-kakxmc14 48 2 , , , cord-293304-kakxmc14 48 3 16 16 CD cord-293304-kakxmc14 48 4 HCQ HCQ NNP cord-293304-kakxmc14 48 5 has have VBZ cord-293304-kakxmc14 48 6 been be VBN cord-293304-kakxmc14 48 7 found find VBN cord-293304-kakxmc14 48 8 out out RP cord-293304-kakxmc14 48 9 to to TO cord-293304-kakxmc14 48 10 be be VB cord-293304-kakxmc14 48 11 less less RBR cord-293304-kakxmc14 48 12 toxic toxic JJ cord-293304-kakxmc14 48 13 than than IN cord-293304-kakxmc14 48 14 CQ CQ NNP cord-293304-kakxmc14 48 15 , , , cord-293304-kakxmc14 48 16 and and CC cord-293304-kakxmc14 48 17 it -PRON- PRP cord-293304-kakxmc14 48 18 is be VBZ cord-293304-kakxmc14 48 19 currently currently RB cord-293304-kakxmc14 48 20 being be VBG cord-293304-kakxmc14 48 21 used use VBN cord-293304-kakxmc14 48 22 to to TO cord-293304-kakxmc14 48 23 treat treat VB cord-293304-kakxmc14 48 24 COVID-19 COVID-19 NNP cord-293304-kakxmc14 48 25 patients patient NNS cord-293304-kakxmc14 48 26 . . . cord-293304-kakxmc14 49 1 17 17 CD cord-293304-kakxmc14 50 1 The the DT cord-293304-kakxmc14 50 2 present present JJ cord-293304-kakxmc14 50 3 study study NN cord-293304-kakxmc14 50 4 deals deal NNS cord-293304-kakxmc14 50 5 with with IN cord-293304-kakxmc14 50 6 theoretical theoretical JJ cord-293304-kakxmc14 50 7 perspectives perspective NNS cord-293304-kakxmc14 50 8 on on IN cord-293304-kakxmc14 50 9 the the DT cord-293304-kakxmc14 50 10 anti anti JJ cord-293304-kakxmc14 50 11 - - JJ cord-293304-kakxmc14 50 12 SARS SARS NNP cord-293304-kakxmc14 50 13 - - HYPH cord-293304-kakxmc14 50 14 CoV-2 CoV-2 NNP cord-293304-kakxmc14 50 15 activity activity NN cord-293304-kakxmc14 50 16 of of IN cord-293304-kakxmc14 50 17 CQ CQ NNP cord-293304-kakxmc14 50 18 and and CC cord-293304-kakxmc14 50 19 HCQ HCQ NNP cord-293304-kakxmc14 50 20 analogs analog NNS cord-293304-kakxmc14 50 21 by by IN cord-293304-kakxmc14 50 22 observing observe VBG cord-293304-kakxmc14 50 23 their -PRON- PRP$ cord-293304-kakxmc14 50 24 main main JJ cord-293304-kakxmc14 50 25 protease protease NN cord-293304-kakxmc14 50 26 inhibitory inhibitory JJ cord-293304-kakxmc14 50 27 property property NN cord-293304-kakxmc14 50 28 . . . cord-293304-kakxmc14 51 1 Molecular molecular JJ cord-293304-kakxmc14 51 2 docking docking NN cord-293304-kakxmc14 51 3 studies study NNS cord-293304-kakxmc14 51 4 with with IN cord-293304-kakxmc14 51 5 the the DT cord-293304-kakxmc14 51 6 3CL 3cl CD cord-293304-kakxmc14 51 7 pro pro JJ cord-293304-kakxmc14 51 8 protein protein NN cord-293304-kakxmc14 51 9 were be VBD cord-293304-kakxmc14 51 10 performed perform VBN cord-293304-kakxmc14 51 11 to to TO cord-293304-kakxmc14 51 12 analyze analyze VB cord-293304-kakxmc14 51 13 the the DT cord-293304-kakxmc14 51 14 drug drug NN cord-293304-kakxmc14 51 15 likeness likeness NN cord-293304-kakxmc14 51 16 as as RB cord-293304-kakxmc14 51 17 well well RB cord-293304-kakxmc14 51 18 as as IN cord-293304-kakxmc14 51 19 to to TO cord-293304-kakxmc14 51 20 correlate correlate VB cord-293304-kakxmc14 51 21 the the DT cord-293304-kakxmc14 51 22 binding bind VBG cord-293304-kakxmc14 51 23 energy energy NN cord-293304-kakxmc14 51 24 of of IN cord-293304-kakxmc14 51 25 the the DT cord-293304-kakxmc14 51 26 docked dock VBN cord-293304-kakxmc14 51 27 complex complex NN cord-293304-kakxmc14 51 28 with with IN cord-293304-kakxmc14 51 29 various various JJ cord-293304-kakxmc14 51 30 physicochemical physicochemical JJ cord-293304-kakxmc14 51 31 properties property NNS cord-293304-kakxmc14 51 32 of of IN cord-293304-kakxmc14 51 33 the the DT cord-293304-kakxmc14 51 34 active active JJ cord-293304-kakxmc14 51 35 molecules molecule NNS cord-293304-kakxmc14 51 36 , , , cord-293304-kakxmc14 51 37 which which WDT cord-293304-kakxmc14 51 38 will will MD cord-293304-kakxmc14 51 39 aid aid VB cord-293304-kakxmc14 51 40 in in IN cord-293304-kakxmc14 51 41 the the DT cord-293304-kakxmc14 51 42 design design NN cord-293304-kakxmc14 51 43 of of IN cord-293304-kakxmc14 51 44 new new JJ cord-293304-kakxmc14 51 45 anti anti JJ cord-293304-kakxmc14 51 46 - - JJ cord-293304-kakxmc14 51 47 COVID-19 covid-19 JJ cord-293304-kakxmc14 51 48 medicatives medicative NNS cord-293304-kakxmc14 51 49 . . . cord-293304-kakxmc14 52 1 Analogs Analogs NNP cord-293304-kakxmc14 52 2 of of IN cord-293304-kakxmc14 52 3 CQ CQ NNP cord-293304-kakxmc14 52 4 and and CC cord-293304-kakxmc14 52 5 HCQ HCQ NNP cord-293304-kakxmc14 52 6 as as RB cord-293304-kakxmc14 52 7 well well RB cord-293304-kakxmc14 52 8 as as IN cord-293304-kakxmc14 52 9 primaquine primaquine NN cord-293304-kakxmc14 52 10 derivatives derivative NNS cord-293304-kakxmc14 52 11 were be VBD cord-293304-kakxmc14 52 12 obtained obtain VBN cord-293304-kakxmc14 52 13 through through IN cord-293304-kakxmc14 52 14 literature literature NN cord-293304-kakxmc14 52 15 search search NN cord-293304-kakxmc14 52 16 , , , cord-293304-kakxmc14 52 17 from from IN cord-293304-kakxmc14 52 18 the the DT cord-293304-kakxmc14 52 19 database database NN cord-293304-kakxmc14 52 20 of of IN cord-293304-kakxmc14 52 21 small small JJ cord-293304-kakxmc14 52 22 molecules molecule NNS cord-293304-kakxmc14 52 23 Pubchem Pubchem NNP cord-293304-kakxmc14 52 24 as as RB cord-293304-kakxmc14 52 25 well well RB cord-293304-kakxmc14 52 26 as as IN cord-293304-kakxmc14 52 27 created create VBN cord-293304-kakxmc14 52 28 manually manually RB cord-293304-kakxmc14 52 29 . . . cord-293304-kakxmc14 53 1 18−22 18−22 CD cord-293304-kakxmc14 54 1 All all PDT cord-293304-kakxmc14 54 2 the the DT cord-293304-kakxmc14 54 3 molecules molecule NNS cord-293304-kakxmc14 54 4 were be VBD cord-293304-kakxmc14 54 5 drawn draw VBN cord-293304-kakxmc14 54 6 in in IN cord-293304-kakxmc14 54 7 Marvin Marvin NNP cord-293304-kakxmc14 54 8 Sketch Sketch NNP cord-293304-kakxmc14 54 9 and and CC cord-293304-kakxmc14 54 10 minimized minimize VBD cord-293304-kakxmc14 54 11 their -PRON- PRP$ cord-293304-kakxmc14 54 12 energy energy NN cord-293304-kakxmc14 54 13 using use VBG cord-293304-kakxmc14 54 14 Avogadro Avogadro NNP cord-293304-kakxmc14 54 15 software software NN cord-293304-kakxmc14 54 16 . . . cord-293304-kakxmc14 55 1 23 23 CD cord-293304-kakxmc14 56 1 , , , cord-293304-kakxmc14 56 2 24 24 CD cord-293304-kakxmc14 57 1 The the DT cord-293304-kakxmc14 57 2 structure structure NN cord-293304-kakxmc14 57 3 of of IN cord-293304-kakxmc14 57 4 3CL 3CL NNP cord-293304-kakxmc14 57 5 pro pro JJ cord-293304-kakxmc14 57 6 protein protein NN cord-293304-kakxmc14 57 7 having have VBG cord-293304-kakxmc14 57 8 PDB PDB NNP cord-293304-kakxmc14 57 9 ID ID NNP cord-293304-kakxmc14 57 10 6LU7 6lu7 CD cord-293304-kakxmc14 57 11 was be VBD cord-293304-kakxmc14 57 12 retrieved retrieve VBN cord-293304-kakxmc14 57 13 from from IN cord-293304-kakxmc14 57 14 RCSB RCSB NNP cord-293304-kakxmc14 57 15 Protein Protein NNP cord-293304-kakxmc14 57 16 Data Data NNP cord-293304-kakxmc14 57 17 Bank Bank NNP cord-293304-kakxmc14 57 18 . . . cord-293304-kakxmc14 58 1 10 10 CD cord-293304-kakxmc14 58 2 , , , cord-293304-kakxmc14 58 3 25 25 CD cord-293304-kakxmc14 58 4 Characterization characterization NN cord-293304-kakxmc14 58 5 studies study NNS cord-293304-kakxmc14 58 6 of of IN cord-293304-kakxmc14 58 7 the the DT cord-293304-kakxmc14 58 8 protein protein NN cord-293304-kakxmc14 58 9 were be VBD cord-293304-kakxmc14 58 10 done do VBN cord-293304-kakxmc14 58 11 by by IN cord-293304-kakxmc14 58 12 using use VBG cord-293304-kakxmc14 58 13 Expasy Expasy NNP cord-293304-kakxmc14 58 14 - - HYPH cord-293304-kakxmc14 58 15 protparam protparam NNP cord-293304-kakxmc14 58 16 , , , cord-293304-kakxmc14 58 17 an an DT cord-293304-kakxmc14 58 18 online online JJ cord-293304-kakxmc14 58 19 server server NN cord-293304-kakxmc14 58 20 , , , cord-293304-kakxmc14 58 21 which which WDT cord-293304-kakxmc14 58 22 provides provide VBZ cord-293304-kakxmc14 58 23 all all PDT cord-293304-kakxmc14 58 24 the the DT cord-293304-kakxmc14 58 25 details detail NNS cord-293304-kakxmc14 58 26 regarding regard VBG cord-293304-kakxmc14 58 27 the the DT cord-293304-kakxmc14 58 28 protein protein NN cord-293304-kakxmc14 58 29 . . . cord-293304-kakxmc14 59 1 The the DT cord-293304-kakxmc14 59 2 energy energy NN cord-293304-kakxmc14 59 3 minimization minimization NN cord-293304-kakxmc14 59 4 of of IN cord-293304-kakxmc14 59 5 the the DT cord-293304-kakxmc14 59 6 retrieved retrieve VBN cord-293304-kakxmc14 59 7 protein protein NN cord-293304-kakxmc14 59 8 was be VBD cord-293304-kakxmc14 59 9 done do VBN cord-293304-kakxmc14 59 10 by by IN cord-293304-kakxmc14 59 11 employing employ VBG cord-293304-kakxmc14 59 12 Swiss swiss JJ cord-293304-kakxmc14 59 13 PBD PBD NNP cord-293304-kakxmc14 59 14 Viewer Viewer NNP cord-293304-kakxmc14 59 15 . . . cord-293304-kakxmc14 60 1 26 26 CD cord-293304-kakxmc14 60 2 , , , cord-293304-kakxmc14 60 3 27 27 CD cord-293304-kakxmc14 60 4 Molecular molecular JJ cord-293304-kakxmc14 60 5 docking docking NN cord-293304-kakxmc14 60 6 was be VBD cord-293304-kakxmc14 60 7 done do VBN cord-293304-kakxmc14 60 8 using use VBG cord-293304-kakxmc14 60 9 Autodock Autodock NNP cord-293304-kakxmc14 60 10 4.2.6 4.2.6 CD cord-293304-kakxmc14 60 11 . . . cord-293304-kakxmc14 61 1 28 28 CD cord-293304-kakxmc14 62 1 Both both DT cord-293304-kakxmc14 62 2 protein protein NN cord-293304-kakxmc14 62 3 and and CC cord-293304-kakxmc14 62 4 ligands ligand NNS cord-293304-kakxmc14 62 5 were be VBD cord-293304-kakxmc14 62 6 prepared prepare VBN cord-293304-kakxmc14 62 7 in in IN cord-293304-kakxmc14 62 8 pdbqt pdbqt NNP cord-293304-kakxmc14 62 9 format format NN cord-293304-kakxmc14 62 10 . . . cord-293304-kakxmc14 63 1 Polar polar JJ cord-293304-kakxmc14 63 2 hydrogens hydrogen NNS cord-293304-kakxmc14 63 3 and and CC cord-293304-kakxmc14 63 4 Gasteiger Gasteiger NNP cord-293304-kakxmc14 63 5 charges charge NNS cord-293304-kakxmc14 63 6 were be VBD cord-293304-kakxmc14 63 7 added add VBN cord-293304-kakxmc14 63 8 to to IN cord-293304-kakxmc14 63 9 the the DT cord-293304-kakxmc14 63 10 receptor receptor NN cord-293304-kakxmc14 63 11 . . . cord-293304-kakxmc14 64 1 Grid grid NN cord-293304-kakxmc14 64 2 was be VBD cord-293304-kakxmc14 64 3 prepared prepare VBN cord-293304-kakxmc14 64 4 with with IN cord-293304-kakxmc14 64 5 60 60 CD cord-293304-kakxmc14 64 6 × × NN cord-293304-kakxmc14 64 7 60 60 CD cord-293304-kakxmc14 64 8 × × NN cord-293304-kakxmc14 64 9 60 60 CD cord-293304-kakxmc14 64 10 Å å NN cord-293304-kakxmc14 64 11 3 3 CD cord-293304-kakxmc14 64 12 with with IN cord-293304-kakxmc14 64 13 spacing space VBG cord-293304-kakxmc14 64 14 0.375 0.375 CD cord-293304-kakxmc14 64 15 Å å NN cord-293304-kakxmc14 64 16 and and CC cord-293304-kakxmc14 64 17 centered center VBN cord-293304-kakxmc14 64 18 at at IN cord-293304-kakxmc14 64 19 −18.617 −18.617 NNP cord-293304-kakxmc14 64 20 , , , cord-293304-kakxmc14 64 21 13.208 13.208 CD cord-293304-kakxmc14 64 22 , , , cord-293304-kakxmc14 64 23 and and CC cord-293304-kakxmc14 64 24 60.061 60.061 CD cord-293304-kakxmc14 64 25 Å å NN cord-293304-kakxmc14 64 26 along along RB cord-293304-kakxmc14 64 27 x x NNP cord-293304-kakxmc14 64 28 , , , cord-293304-kakxmc14 64 29 y y NNP cord-293304-kakxmc14 64 30 , , , cord-293304-kakxmc14 64 31 and and CC cord-293304-kakxmc14 64 32 z z NNP cord-293304-kakxmc14 64 33 axes axis NNS cord-293304-kakxmc14 64 34 , , , cord-293304-kakxmc14 64 35 respectively respectively RB cord-293304-kakxmc14 64 36 . . . cord-293304-kakxmc14 65 1 Grids grid NNS cord-293304-kakxmc14 65 2 were be VBD cord-293304-kakxmc14 65 3 prepared prepare VBN cord-293304-kakxmc14 65 4 for for IN cord-293304-kakxmc14 65 5 every every DT cord-293304-kakxmc14 65 6 atom atom NN cord-293304-kakxmc14 65 7 present present NN cord-293304-kakxmc14 65 8 in in IN cord-293304-kakxmc14 65 9 the the DT cord-293304-kakxmc14 65 10 ligand ligand NN cord-293304-kakxmc14 65 11 data datum NNS cord-293304-kakxmc14 65 12 set set NN cord-293304-kakxmc14 65 13 . . . cord-293304-kakxmc14 66 1 The the DT cord-293304-kakxmc14 66 2 genetic genetic JJ cord-293304-kakxmc14 66 3 algorithm algorithm NN cord-293304-kakxmc14 66 4 was be VBD cord-293304-kakxmc14 66 5 employed employ VBN cord-293304-kakxmc14 66 6 as as IN cord-293304-kakxmc14 66 7 search search NN cord-293304-kakxmc14 66 8 parameter parameter NN cord-293304-kakxmc14 66 9 with with IN cord-293304-kakxmc14 66 10 50 50 CD cord-293304-kakxmc14 66 11 runs run NNS cord-293304-kakxmc14 66 12 , , , cord-293304-kakxmc14 66 13 300 300 CD cord-293304-kakxmc14 66 14 and and CC cord-293304-kakxmc14 66 15 27,000 27,000 CD cord-293304-kakxmc14 66 16 population population NN cord-293304-kakxmc14 66 17 size size NN cord-293304-kakxmc14 66 18 and and CC cord-293304-kakxmc14 66 19 number number NN cord-293304-kakxmc14 66 20 of of IN cord-293304-kakxmc14 66 21 generations generation NNS cord-293304-kakxmc14 66 22 , , , cord-293304-kakxmc14 66 23 respectively respectively RB cord-293304-kakxmc14 66 24 . . . cord-293304-kakxmc14 67 1 A a DT cord-293304-kakxmc14 67 2 multiple multiple JJ cord-293304-kakxmc14 67 3 linear linear JJ cord-293304-kakxmc14 67 4 regression regression NN cord-293304-kakxmc14 67 5 ( ( -LRB- cord-293304-kakxmc14 67 6 MLR MLR NNP cord-293304-kakxmc14 67 7 ) ) -RRB- cord-293304-kakxmc14 67 8 model model NN cord-293304-kakxmc14 67 9 was be VBD cord-293304-kakxmc14 67 10 generated generate VBN cord-293304-kakxmc14 67 11 to to TO cord-293304-kakxmc14 67 12 find find VB cord-293304-kakxmc14 67 13 the the DT cord-293304-kakxmc14 67 14 correlation correlation NN cord-293304-kakxmc14 67 15 with with IN cord-293304-kakxmc14 67 16 binding bind VBG cord-293304-kakxmc14 67 17 energy energy NN cord-293304-kakxmc14 67 18 obtained obtain VBN cord-293304-kakxmc14 67 19 from from IN cord-293304-kakxmc14 67 20 docking docking NN cord-293304-kakxmc14 67 21 and and CC cord-293304-kakxmc14 67 22 the the DT cord-293304-kakxmc14 67 23 physicochemical physicochemical JJ cord-293304-kakxmc14 67 24 properties property NNS cord-293304-kakxmc14 67 25 using use VBG cord-293304-kakxmc14 67 26 QSARINS QSARINS NNP cord-293304-kakxmc14 67 27 . . . cord-293304-kakxmc14 68 1 29 29 CD cord-293304-kakxmc14 68 2 , , , cord-293304-kakxmc14 68 3 30 30 CD cord-293304-kakxmc14 68 4 The the DT cord-293304-kakxmc14 68 5 molecular molecular JJ cord-293304-kakxmc14 68 6 descriptors descriptor NNS cord-293304-kakxmc14 68 7 for for IN cord-293304-kakxmc14 68 8 the the DT cord-293304-kakxmc14 68 9 ligands ligand NNS cord-293304-kakxmc14 68 10 were be VBD cord-293304-kakxmc14 68 11 calculated calculate VBN cord-293304-kakxmc14 68 12 utilizing utilize VBG cord-293304-kakxmc14 68 13 PaDEL PaDEL NNP cord-293304-kakxmc14 68 14 - - HYPH cord-293304-kakxmc14 68 15 Descriptor descriptor NN cord-293304-kakxmc14 68 16 . . . cord-293304-kakxmc14 69 1 31 31 CD cord-293304-kakxmc14 70 1 To to TO cord-293304-kakxmc14 70 2 build build VB cord-293304-kakxmc14 70 3 the the DT cord-293304-kakxmc14 70 4 model model NN cord-293304-kakxmc14 70 5 , , , cord-293304-kakxmc14 70 6 80 80 CD cord-293304-kakxmc14 70 7 % % NN cord-293304-kakxmc14 70 8 of of IN cord-293304-kakxmc14 70 9 the the DT cord-293304-kakxmc14 70 10 data datum NNS cord-293304-kakxmc14 70 11 set set VBN cord-293304-kakxmc14 70 12 were be VBD cord-293304-kakxmc14 70 13 randomly randomly RB cord-293304-kakxmc14 70 14 divided divide VBN cord-293304-kakxmc14 70 15 as as IN cord-293304-kakxmc14 70 16 training training NN cord-293304-kakxmc14 70 17 set set NN cord-293304-kakxmc14 70 18 and and CC cord-293304-kakxmc14 70 19 test test NN cord-293304-kakxmc14 70 20 set set VBN cord-293304-kakxmc14 70 21 in in IN cord-293304-kakxmc14 70 22 80:20 80:20 CD cord-293304-kakxmc14 70 23 ratio ratio NN cord-293304-kakxmc14 70 24 . . . cord-293304-kakxmc14 71 1 Thirty thirty CD cord-293304-kakxmc14 71 2 - - HYPH cord-293304-kakxmc14 71 3 five five CD cord-293304-kakxmc14 71 4 compounds compound NNS cord-293304-kakxmc14 71 5 ( ( -LRB- cord-293304-kakxmc14 71 6 28 28 CD cord-293304-kakxmc14 71 7 training training NN cord-293304-kakxmc14 71 8 and and CC cord-293304-kakxmc14 71 9 7 7 CD cord-293304-kakxmc14 71 10 test test NN cord-293304-kakxmc14 71 11 ) ) -RRB- cord-293304-kakxmc14 71 12 including include VBG cord-293304-kakxmc14 71 13 CQ CQ NNP cord-293304-kakxmc14 71 14 and and CC cord-293304-kakxmc14 71 15 HCQ HCQ NNP cord-293304-kakxmc14 71 16 were be VBD cord-293304-kakxmc14 71 17 employed employ VBN cord-293304-kakxmc14 71 18 for for IN cord-293304-kakxmc14 71 19 modeling model VBG cord-293304-kakxmc14 71 20 purpose purpose NN cord-293304-kakxmc14 71 21 ( ( -LRB- cord-293304-kakxmc14 71 22 Supplementary Supplementary NNP cord-293304-kakxmc14 71 23 Tables Tables NNPS cord-293304-kakxmc14 71 24 S2 S2 NNP cord-293304-kakxmc14 71 25 and and CC cord-293304-kakxmc14 71 26 S3 S3 NNP cord-293304-kakxmc14 71 27 ) ) -RRB- cord-293304-kakxmc14 71 28 . . . cord-293304-kakxmc14 72 1 The the DT cord-293304-kakxmc14 72 2 models model NNS cord-293304-kakxmc14 72 3 were be VBD cord-293304-kakxmc14 72 4 generated generate VBN cord-293304-kakxmc14 72 5 using use VBG cord-293304-kakxmc14 72 6 training training NN cord-293304-kakxmc14 72 7 set set VBN cord-293304-kakxmc14 72 8 with with IN cord-293304-kakxmc14 72 9 MLR MLR NNP cord-293304-kakxmc14 72 10 analysis analysis NN cord-293304-kakxmc14 72 11 of of IN cord-293304-kakxmc14 72 12 1−5 1−5 CD cord-293304-kakxmc14 72 13 variables variable NNS cord-293304-kakxmc14 72 14 . . . cord-293304-kakxmc14 73 1 The the DT cord-293304-kakxmc14 73 2 generated generate VBN cord-293304-kakxmc14 73 3 models model NNS cord-293304-kakxmc14 73 4 were be VBD cord-293304-kakxmc14 73 5 examined examine VBN cord-293304-kakxmc14 73 6 by by IN cord-293304-kakxmc14 73 7 internal internal JJ cord-293304-kakxmc14 73 8 validation validation NN cord-293304-kakxmc14 73 9 and and CC cord-293304-kakxmc14 73 10 external external JJ cord-293304-kakxmc14 73 11 validation validation NN cord-293304-kakxmc14 73 12 . . . cord-293304-kakxmc14 74 1 Internal internal JJ cord-293304-kakxmc14 74 2 validation validation NN cord-293304-kakxmc14 74 3 was be VBD cord-293304-kakxmc14 74 4 done do VBN cord-293304-kakxmc14 74 5 by by IN cord-293304-kakxmc14 74 6 cross cross JJ cord-293304-kakxmc14 74 7 - - JJ cord-293304-kakxmc14 74 8 validated validated JJ cord-293304-kakxmc14 74 9 leave leave NN cord-293304-kakxmc14 74 10 - - HYPH cord-293304-kakxmc14 74 11 one one CD cord-293304-kakxmc14 74 12 - - HYPH cord-293304-kakxmc14 74 13 out out NN cord-293304-kakxmc14 74 14 ( ( -LRB- cord-293304-kakxmc14 74 15 LOO LOO NNP cord-293304-kakxmc14 74 16 ) ) -RRB- cord-293304-kakxmc14 74 17 method method NN cord-293304-kakxmc14 74 18 , , , cord-293304-kakxmc14 74 19 which which WDT cord-293304-kakxmc14 74 20 involves involve VBZ cord-293304-kakxmc14 74 21 iteratively iteratively RB cord-293304-kakxmc14 74 22 leaving leave VBG cord-293304-kakxmc14 74 23 one one CD cord-293304-kakxmc14 74 24 compound compound NN cord-293304-kakxmc14 74 25 from from IN cord-293304-kakxmc14 74 26 the the DT cord-293304-kakxmc14 74 27 training training NN cord-293304-kakxmc14 74 28 set set NN cord-293304-kakxmc14 74 29 and and CC cord-293304-kakxmc14 74 30 generating generate VBG cord-293304-kakxmc14 74 31 regression regression NN cord-293304-kakxmc14 74 32 model model NN cord-293304-kakxmc14 74 33 with with IN cord-293304-kakxmc14 74 34 the the DT cord-293304-kakxmc14 74 35 remaining remain VBG cord-293304-kakxmc14 74 36 molecules molecule NNS cord-293304-kakxmc14 74 37 and and CC cord-293304-kakxmc14 74 38 predicting predict VBG cord-293304-kakxmc14 74 39 the the DT cord-293304-kakxmc14 74 40 value value NN cord-293304-kakxmc14 74 41 of of IN cord-293304-kakxmc14 74 42 response response NN cord-293304-kakxmc14 74 43 for for IN cord-293304-kakxmc14 74 44 the the DT cord-293304-kakxmc14 74 45 excluded exclude VBN cord-293304-kakxmc14 74 46 one one CD cord-293304-kakxmc14 74 47 . . . cord-293304-kakxmc14 75 1 For for IN cord-293304-kakxmc14 75 2 a a DT cord-293304-kakxmc14 75 3 good good JJ cord-293304-kakxmc14 75 4 model model NN cord-293304-kakxmc14 75 5 , , , cord-293304-kakxmc14 75 6 the the DT cord-293304-kakxmc14 75 7 regression regression NN cord-293304-kakxmc14 75 8 coefficient coefficient NN cord-293304-kakxmc14 75 9 ( ( -LRB- cord-293304-kakxmc14 75 10 R r NN cord-293304-kakxmc14 75 11 2 2 CD cord-293304-kakxmc14 75 12 ) ) -RRB- cord-293304-kakxmc14 75 13 as as RB cord-293304-kakxmc14 75 14 well well RB cord-293304-kakxmc14 75 15 as as IN cord-293304-kakxmc14 75 16 the the DT cord-293304-kakxmc14 75 17 cross cross NN cord-293304-kakxmc14 75 18 validated validate VBD cord-293304-kakxmc14 75 19 R R NNP cord-293304-kakxmc14 75 20 2 2 CD cord-293304-kakxmc14 75 21 , , , cord-293304-kakxmc14 75 22 that that RB cord-293304-kakxmc14 75 23 is is RB cord-293304-kakxmc14 75 24 , , , cord-293304-kakxmc14 75 25 Q Q NNP cord-293304-kakxmc14 75 26 2 2 CD cord-293304-kakxmc14 75 27 has have VBZ cord-293304-kakxmc14 75 28 to to TO cord-293304-kakxmc14 75 29 be be VB cord-293304-kakxmc14 75 30 close close JJ cord-293304-kakxmc14 76 1 and and CC cord-293304-kakxmc14 76 2 > > XX cord-293304-kakxmc14 76 3 0 0 CD cord-293304-kakxmc14 76 4 . . . cord-293304-kakxmc14 76 5 6 6 CD cord-293304-kakxmc14 76 6 . . . cord-293304-kakxmc14 77 1 29,32 29,32 CD cord-293304-kakxmc14 78 1 The the DT cord-293304-kakxmc14 78 2 model model NN cord-293304-kakxmc14 78 3 was be VBD cord-293304-kakxmc14 78 4 validated validate VBN cord-293304-kakxmc14 78 5 using use VBG cord-293304-kakxmc14 78 6 test test NN cord-293304-kakxmc14 78 7 set set VBN cord-293304-kakxmc14 78 8 , , , cord-293304-kakxmc14 78 9 which which WDT cord-293304-kakxmc14 78 10 was be VBD cord-293304-kakxmc14 78 11 not not RB cord-293304-kakxmc14 78 12 included include VBN cord-293304-kakxmc14 78 13 in in IN cord-293304-kakxmc14 78 14 model model NN cord-293304-kakxmc14 78 15 generation generation NN cord-293304-kakxmc14 78 16 . . . cord-293304-kakxmc14 79 1 29 29 CD cord-293304-kakxmc14 79 2 , , , cord-293304-kakxmc14 79 3 33 33 CD cord-293304-kakxmc14 79 4 The the DT cord-293304-kakxmc14 79 5 best good JJS cord-293304-kakxmc14 79 6 model model NN cord-293304-kakxmc14 79 7 was be VBD cord-293304-kakxmc14 79 8 used use VBN cord-293304-kakxmc14 79 9 to to TO cord-293304-kakxmc14 79 10 predict predict VB cord-293304-kakxmc14 79 11 the the DT cord-293304-kakxmc14 79 12 binding bind VBG cord-293304-kakxmc14 79 13 energy energy NN cord-293304-kakxmc14 79 14 of of IN cord-293304-kakxmc14 79 15 novel novel JJ cord-293304-kakxmc14 79 16 set set NN cord-293304-kakxmc14 79 17 of of IN cord-293304-kakxmc14 79 18 compounds compound NNS cord-293304-kakxmc14 79 19 . . . cord-293304-kakxmc14 80 1 All all PDT cord-293304-kakxmc14 80 2 the the DT cord-293304-kakxmc14 80 3 MD MD NNP cord-293304-kakxmc14 80 4 simulations simulation NNS cord-293304-kakxmc14 80 5 were be VBD cord-293304-kakxmc14 80 6 done do VBN cord-293304-kakxmc14 80 7 using use VBG cord-293304-kakxmc14 80 8 the the DT cord-293304-kakxmc14 80 9 NAMD NAMD NNP cord-293304-kakxmc14 80 10 package package NN cord-293304-kakxmc14 80 11 ( ( -LRB- cord-293304-kakxmc14 80 12 Version version NN cord-293304-kakxmc14 80 13 2.14 2.14 CD cord-293304-kakxmc14 80 14 ) ) -RRB- cord-293304-kakxmc14 80 15 developed develop VBN cord-293304-kakxmc14 80 16 by by IN cord-293304-kakxmc14 80 17 the the DT cord-293304-kakxmc14 80 18 Theoretical Theoretical NNP cord-293304-kakxmc14 80 19 and and CC cord-293304-kakxmc14 80 20 Computational Computational NNP cord-293304-kakxmc14 80 21 Biophysics Biophysics NNP cord-293304-kakxmc14 80 22 Group Group NNP cord-293304-kakxmc14 80 23 in in IN cord-293304-kakxmc14 80 24 the the DT cord-293304-kakxmc14 80 25 Beckman Beckman NNP cord-293304-kakxmc14 80 26 Institute Institute NNP cord-293304-kakxmc14 80 27 for for IN cord-293304-kakxmc14 80 28 Advanced Advanced NNP cord-293304-kakxmc14 80 29 Science Science NNP cord-293304-kakxmc14 80 30 and and CC cord-293304-kakxmc14 80 31 Technology Technology NNP cord-293304-kakxmc14 80 32 at at IN cord-293304-kakxmc14 80 33 the the DT cord-293304-kakxmc14 80 34 University University NNP cord-293304-kakxmc14 80 35 of of IN cord-293304-kakxmc14 80 36 Illinois Illinois NNP cord-293304-kakxmc14 80 37 at at IN cord-293304-kakxmc14 80 38 Urbana−Champaign Urbana−Champaign NNP cord-293304-kakxmc14 80 39 34 34 CD cord-293304-kakxmc14 80 40 with with IN cord-293304-kakxmc14 80 41 the the DT cord-293304-kakxmc14 80 42 CHARMM CHARMM NNP cord-293304-kakxmc14 80 43 36 36 CD cord-293304-kakxmc14 80 44 force force NN cord-293304-kakxmc14 80 45 field field NN cord-293304-kakxmc14 80 46 . . . cord-293304-kakxmc14 81 1 35 35 CD cord-293304-kakxmc14 81 2 , , , cord-293304-kakxmc14 81 3 36 36 CD cord-293304-kakxmc14 82 1 The the DT cord-293304-kakxmc14 82 2 docked dock VBN cord-293304-kakxmc14 82 3 structures structure NNS cord-293304-kakxmc14 82 4 were be VBD cord-293304-kakxmc14 82 5 used use VBN cord-293304-kakxmc14 82 6 as as IN cord-293304-kakxmc14 82 7 the the DT cord-293304-kakxmc14 82 8 initial initial JJ cord-293304-kakxmc14 82 9 coordinates coordinate NNS cord-293304-kakxmc14 82 10 for for IN cord-293304-kakxmc14 82 11 MD MD NNP cord-293304-kakxmc14 82 12 simulations simulation NNS cord-293304-kakxmc14 82 13 . . . cord-293304-kakxmc14 83 1 TIP3P TIP3P NNP cord-293304-kakxmc14 83 2 water water NN cord-293304-kakxmc14 83 3 box box NN cord-293304-kakxmc14 83 4 was be VBD cord-293304-kakxmc14 83 5 used use VBN cord-293304-kakxmc14 83 6 to to TO cord-293304-kakxmc14 83 7 solvate solvate VB cord-293304-kakxmc14 83 8 the the DT cord-293304-kakxmc14 83 9 complex complex NN cord-293304-kakxmc14 83 10 with with IN cord-293304-kakxmc14 83 11 5 5 CD cord-293304-kakxmc14 83 12 Å å NN cord-293304-kakxmc14 83 13 padding padding NN cord-293304-kakxmc14 83 14 . . . cord-293304-kakxmc14 84 1 The the DT cord-293304-kakxmc14 84 2 solvated solvated JJ cord-293304-kakxmc14 84 3 system system NN cord-293304-kakxmc14 84 4 was be VBD cord-293304-kakxmc14 84 5 minimized minimize VBN cord-293304-kakxmc14 84 6 for for IN cord-293304-kakxmc14 84 7 100 100 CD cord-293304-kakxmc14 84 8 ps p NNS cord-293304-kakxmc14 84 9 with with IN cord-293304-kakxmc14 84 10 a a DT cord-293304-kakxmc14 84 11 time time NN cord-293304-kakxmc14 84 12 step step NN cord-293304-kakxmc14 84 13 of of IN cord-293304-kakxmc14 84 14 2 2 CD cord-293304-kakxmc14 84 15 fs f NNS cord-293304-kakxmc14 84 16 . . . cord-293304-kakxmc14 85 1 The the DT cord-293304-kakxmc14 85 2 simulations simulation NNS cord-293304-kakxmc14 85 3 were be VBD cord-293304-kakxmc14 85 4 done do VBN cord-293304-kakxmc14 85 5 with with IN cord-293304-kakxmc14 85 6 Particle Particle NNP cord-293304-kakxmc14 85 7 mesh mesh NN cord-293304-kakxmc14 85 8 Ewald Ewald NNP cord-293304-kakxmc14 85 9 electrostatics electrostatic NNS cord-293304-kakxmc14 85 10 and and CC cord-293304-kakxmc14 85 11 periodic periodic JJ cord-293304-kakxmc14 85 12 boundary boundary JJ cord-293304-kakxmc14 85 13 conditions condition NNS cord-293304-kakxmc14 85 14 . . . cord-293304-kakxmc14 86 1 Atom atom NN cord-293304-kakxmc14 86 2 - - HYPH cord-293304-kakxmc14 86 3 based base VBN cord-293304-kakxmc14 86 4 cutoff cutoff NN cord-293304-kakxmc14 86 5 of of IN cord-293304-kakxmc14 86 6 12 12 CD cord-293304-kakxmc14 86 7 Å å NN cord-293304-kakxmc14 86 8 was be VBD cord-293304-kakxmc14 86 9 applied apply VBN cord-293304-kakxmc14 86 10 for for IN cord-293304-kakxmc14 86 11 nonbonding nonbonde VBG cord-293304-kakxmc14 86 12 interactions interaction NNS cord-293304-kakxmc14 86 13 . . . cord-293304-kakxmc14 87 1 The the DT cord-293304-kakxmc14 87 2 temperature temperature NN cord-293304-kakxmc14 87 3 and and CC cord-293304-kakxmc14 87 4 pressure pressure NN cord-293304-kakxmc14 87 5 were be VBD cord-293304-kakxmc14 87 6 kept keep VBN cord-293304-kakxmc14 87 7 constant constant JJ cord-293304-kakxmc14 87 8 at at IN cord-293304-kakxmc14 87 9 310 310 CD cord-293304-kakxmc14 87 10 K K NNP cord-293304-kakxmc14 87 11 and and CC cord-293304-kakxmc14 87 12 1 1 CD cord-293304-kakxmc14 87 13 atm atm NN cord-293304-kakxmc14 87 14 , , , cord-293304-kakxmc14 87 15 respectively respectively RB cord-293304-kakxmc14 87 16 , , , cord-293304-kakxmc14 87 17 using use VBG cord-293304-kakxmc14 87 18 Langevin Langevin NNP cord-293304-kakxmc14 87 19 dynamics dynamic NNS cord-293304-kakxmc14 87 20 . . . cord-293304-kakxmc14 88 1 The the DT cord-293304-kakxmc14 88 2 system system NN cord-293304-kakxmc14 88 3 was be VBD cord-293304-kakxmc14 88 4 equilibrated equilibrate VBN cord-293304-kakxmc14 88 5 for for IN cord-293304-kakxmc14 88 6 100 100 CD cord-293304-kakxmc14 88 7 ps p NNS cord-293304-kakxmc14 88 8 followed follow VBN cord-293304-kakxmc14 88 9 by by IN cord-293304-kakxmc14 88 10 a a DT cord-293304-kakxmc14 88 11 production production NN cord-293304-kakxmc14 88 12 simulation simulation NN cord-293304-kakxmc14 88 13 for for IN cord-293304-kakxmc14 88 14 20 20 CD cord-293304-kakxmc14 88 15 ns ns XX cord-293304-kakxmc14 88 16 using use VBG cord-293304-kakxmc14 88 17 the the DT cord-293304-kakxmc14 88 18 NPT NPT NNP cord-293304-kakxmc14 88 19 ensemble ensemble NN cord-293304-kakxmc14 88 20 . . . cord-293304-kakxmc14 89 1 All all PDT cord-293304-kakxmc14 89 2 the the DT cord-293304-kakxmc14 89 3 preparation preparation NN cord-293304-kakxmc14 89 4 and and CC cord-293304-kakxmc14 89 5 analysis analysis NN cord-293304-kakxmc14 89 6 steps step NNS cord-293304-kakxmc14 89 7 were be VBD cord-293304-kakxmc14 89 8 done do VBN cord-293304-kakxmc14 89 9 using use VBG cord-293304-kakxmc14 89 10 the the DT cord-293304-kakxmc14 89 11 VMD VMD NNP cord-293304-kakxmc14 89 12 package package NN cord-293304-kakxmc14 89 13 1.9.3 1.9.3 CD cord-293304-kakxmc14 89 14 ( ( -LRB- cord-293304-kakxmc14 89 15 available available JJ cord-293304-kakxmc14 89 16 at at IN cord-293304-kakxmc14 89 17 http://www http://www NNP cord-293304-kakxmc14 89 18 . . . cord-293304-kakxmc14 90 1 ks.uiuc.edu/Research/vmd/ ks.uiuc.edu/Research/vmd/ NNP cord-293304-kakxmc14 90 2 ) ) -RRB- cord-293304-kakxmc14 91 1 ( ( -LRB- cord-293304-kakxmc14 91 2 see see VB cord-293304-kakxmc14 91 3 Figure Figure NNP cord-293304-kakxmc14 91 4 2 2 CD cord-293304-kakxmc14 91 5 ) ) -RRB- cord-293304-kakxmc14 91 6 . . . cord-293304-kakxmc14 92 1 37 37 CD cord-293304-kakxmc14 92 2 _SP cord-293304-kakxmc14 92 3 Being be VBG cord-293304-kakxmc14 92 4 an an DT cord-293304-kakxmc14 92 5 inevitable inevitable JJ cord-293304-kakxmc14 92 6 enzyme enzyme NN cord-293304-kakxmc14 92 7 for for IN cord-293304-kakxmc14 92 8 replication replication NN cord-293304-kakxmc14 92 9 and and CC cord-293304-kakxmc14 92 10 transcription transcription NN cord-293304-kakxmc14 92 11 of of IN cord-293304-kakxmc14 92 12 the the DT cord-293304-kakxmc14 92 13 virus virus NN cord-293304-kakxmc14 92 14 , , , cord-293304-kakxmc14 92 15 the the DT cord-293304-kakxmc14 92 16 3-chymotrypsin 3-chymotrypsin CD cord-293304-kakxmc14 92 17 - - HYPH cord-293304-kakxmc14 92 18 like like IN cord-293304-kakxmc14 92 19 - - HYPH cord-293304-kakxmc14 92 20 cysteine cysteine NN cord-293304-kakxmc14 92 21 protease protease NN cord-293304-kakxmc14 92 22 ( ( -LRB- cord-293304-kakxmc14 92 23 3CL 3CL NNP cord-293304-kakxmc14 92 24 pro pro JJ cord-293304-kakxmc14 92 25 ) ) -RRB- cord-293304-kakxmc14 92 26 having have VBG cord-293304-kakxmc14 92 27 PDB PDB NNP cord-293304-kakxmc14 92 28 ID ID NNP cord-293304-kakxmc14 92 29 6LU7 6lu7 CD cord-293304-kakxmc14 92 30 was be VBD cord-293304-kakxmc14 92 31 retrieved retrieve VBN cord-293304-kakxmc14 92 32 from from IN cord-293304-kakxmc14 92 33 RCSB RCSB NNP cord-293304-kakxmc14 92 34 PDB PDB NNP cord-293304-kakxmc14 92 35 and and CC cord-293304-kakxmc14 92 36 characterized characterize VBN cord-293304-kakxmc14 92 37 by by IN cord-293304-kakxmc14 92 38 primary primary JJ cord-293304-kakxmc14 92 39 and and CC cord-293304-kakxmc14 92 40 secondary secondary JJ cord-293304-kakxmc14 92 41 structure structure NN cord-293304-kakxmc14 92 42 analysis analysis NN cord-293304-kakxmc14 92 43 as as IN cord-293304-kakxmc14 92 44 shown show VBN cord-293304-kakxmc14 92 45 in in IN cord-293304-kakxmc14 92 46 Table Table NNP cord-293304-kakxmc14 92 47 1 1 CD cord-293304-kakxmc14 92 48 . . . cord-293304-kakxmc14 93 1 The the DT cord-293304-kakxmc14 93 2 pI pI NNP cord-293304-kakxmc14 93 3 value value NN cord-293304-kakxmc14 93 4 ( ( -LRB- cord-293304-kakxmc14 93 5 isoelectric isoelectric JJ cord-293304-kakxmc14 93 6 point point NN cord-293304-kakxmc14 93 7 ) ) -RRB- cord-293304-kakxmc14 93 8 of of IN cord-293304-kakxmc14 93 9 5.95 5.95 CD cord-293304-kakxmc14 93 10 shows show VBZ cord-293304-kakxmc14 93 11 the the DT cord-293304-kakxmc14 93 12 slightly slightly RB cord-293304-kakxmc14 93 13 acidic acidic JJ cord-293304-kakxmc14 93 14 nature nature NN cord-293304-kakxmc14 93 15 of of IN cord-293304-kakxmc14 93 16 the the DT cord-293304-kakxmc14 93 17 protein protein NN cord-293304-kakxmc14 93 18 . . . cord-293304-kakxmc14 94 1 The the DT cord-293304-kakxmc14 94 2 aliphatic aliphatic JJ cord-293304-kakxmc14 94 3 index index NN cord-293304-kakxmc14 94 4 ( ( -LRB- cord-293304-kakxmc14 94 5 AI AI NNP cord-293304-kakxmc14 94 6 ) ) -RRB- cord-293304-kakxmc14 94 7 is be VBZ cord-293304-kakxmc14 94 8 a a DT cord-293304-kakxmc14 94 9 measure measure NN cord-293304-kakxmc14 94 10 of of IN cord-293304-kakxmc14 94 11 the the DT cord-293304-kakxmc14 94 12 relative relative JJ cord-293304-kakxmc14 94 13 volume volume NN cord-293304-kakxmc14 94 14 occupied occupy VBN cord-293304-kakxmc14 94 15 by by IN cord-293304-kakxmc14 94 16 the the DT cord-293304-kakxmc14 94 17 side side NN cord-293304-kakxmc14 94 18 chains chain NNS cord-293304-kakxmc14 94 19 Ala Ala NNP cord-293304-kakxmc14 94 20 , , , cord-293304-kakxmc14 94 21 Leu Leu NNP cord-293304-kakxmc14 94 22 , , , cord-293304-kakxmc14 94 23 Ile Ile NNP cord-293304-kakxmc14 94 24 , , , cord-293304-kakxmc14 94 25 and and CC cord-293304-kakxmc14 94 26 Val Val NNP cord-293304-kakxmc14 94 27 , , , cord-293304-kakxmc14 94 28 which which WDT cord-293304-kakxmc14 94 29 are be VBP cord-293304-kakxmc14 94 30 the the DT cord-293304-kakxmc14 94 31 aliphatic aliphatic JJ cord-293304-kakxmc14 94 32 residues residue NNS cord-293304-kakxmc14 94 33 in in IN cord-293304-kakxmc14 94 34 a a DT cord-293304-kakxmc14 94 35 protein protein NN cord-293304-kakxmc14 94 36 . . . cord-293304-kakxmc14 95 1 High high JJ cord-293304-kakxmc14 95 2 AI ai NN cord-293304-kakxmc14 95 3 ranging range VBG cord-293304-kakxmc14 95 4 from from IN cord-293304-kakxmc14 95 5 66.5 66.5 CD cord-293304-kakxmc14 95 6 to to IN cord-293304-kakxmc14 95 7 84.33 84.33 CD cord-293304-kakxmc14 95 8 implies imply VBZ cord-293304-kakxmc14 95 9 high high JJ cord-293304-kakxmc14 95 10 thermal thermal JJ cord-293304-kakxmc14 95 11 stability stability NN cord-293304-kakxmc14 95 12 and and CC cord-293304-kakxmc14 95 13 hydrophobicity hydrophobicity NN cord-293304-kakxmc14 95 14 , , , cord-293304-kakxmc14 95 15 which which WDT cord-293304-kakxmc14 95 16 help help VBP cord-293304-kakxmc14 95 17 it -PRON- PRP cord-293304-kakxmc14 95 18 for for IN cord-293304-kakxmc14 95 19 membrane membrane NN cord-293304-kakxmc14 95 20 penetration penetration NN cord-293304-kakxmc14 95 21 in in IN cord-293304-kakxmc14 95 22 biological biological JJ cord-293304-kakxmc14 95 23 system system NN cord-293304-kakxmc14 95 24 . . . cord-293304-kakxmc14 96 1 39 39 CD cord-293304-kakxmc14 96 2 , , , cord-293304-kakxmc14 96 3 40 40 CD cord-293304-kakxmc14 97 1 The the DT cord-293304-kakxmc14 97 2 value value NN cord-293304-kakxmc14 97 3 for for IN cord-293304-kakxmc14 97 4 grand grand JJ cord-293304-kakxmc14 97 5 average average NN cord-293304-kakxmc14 97 6 of of IN cord-293304-kakxmc14 97 7 hydropathy hydropathy NNP cord-293304-kakxmc14 97 8 ( ( -LRB- cord-293304-kakxmc14 97 9 GRAVY GRAVY NNP cord-293304-kakxmc14 97 10 ) ) -RRB- cord-293304-kakxmc14 97 11 indicates indicate VBZ cord-293304-kakxmc14 97 12 the the DT cord-293304-kakxmc14 97 13 hydrophilicity hydrophilicity NN cord-293304-kakxmc14 97 14 of of IN cord-293304-kakxmc14 97 15 the the DT cord-293304-kakxmc14 97 16 protein protein NN cord-293304-kakxmc14 97 17 . . . cord-293304-kakxmc14 98 1 40 40 CD cord-293304-kakxmc14 99 1 The the DT cord-293304-kakxmc14 99 2 GRAVY gravy NN cord-293304-kakxmc14 99 3 value value NN cord-293304-kakxmc14 99 4 of of IN cord-293304-kakxmc14 99 5 −0.019 −0.019 NN cord-293304-kakxmc14 99 6 , , , cord-293304-kakxmc14 99 7 which which WDT cord-293304-kakxmc14 99 8 is be VBZ cord-293304-kakxmc14 99 9 close close JJ cord-293304-kakxmc14 99 10 to to IN cord-293304-kakxmc14 99 11 zero zero CD cord-293304-kakxmc14 99 12 , , , cord-293304-kakxmc14 99 13 shows show VBZ cord-293304-kakxmc14 99 14 that that IN cord-293304-kakxmc14 99 15 the the DT cord-293304-kakxmc14 99 16 protein protein NN cord-293304-kakxmc14 99 17 is be VBZ cord-293304-kakxmc14 99 18 hydrophobic hydrophobic JJ cord-293304-kakxmc14 99 19 . . . cord-293304-kakxmc14 100 1 Instability instability NN cord-293304-kakxmc14 100 2 index index NN cord-293304-kakxmc14 100 3 < < XX cord-293304-kakxmc14 100 4 40 40 CD cord-293304-kakxmc14 100 5 shows show VBZ cord-293304-kakxmc14 100 6 that that IN cord-293304-kakxmc14 100 7 in in IN cord-293304-kakxmc14 100 8 vivo vivo NN cord-293304-kakxmc14 100 9 half half JJ cord-293304-kakxmc14 100 10 - - HYPH cord-293304-kakxmc14 100 11 life life NN cord-293304-kakxmc14 100 12 is be VBZ cord-293304-kakxmc14 101 1 greater great JJR cord-293304-kakxmc14 101 2 than than IN cord-293304-kakxmc14 101 3 60 60 CD cord-293304-kakxmc14 101 4 h h NN cord-293304-kakxmc14 101 5 , , , cord-293304-kakxmc14 101 6 which which WDT cord-293304-kakxmc14 101 7 indicates indicate VBZ cord-293304-kakxmc14 101 8 the the DT cord-293304-kakxmc14 101 9 stability stability NN cord-293304-kakxmc14 101 10 of of IN cord-293304-kakxmc14 101 11 the the DT cord-293304-kakxmc14 101 12 protein protein NN cord-293304-kakxmc14 101 13 . . . cord-293304-kakxmc14 102 1 41 41 CD cord-293304-kakxmc14 103 1 , , , cord-293304-kakxmc14 103 2 39 39 CD cord-293304-kakxmc14 104 1 All all PDT cord-293304-kakxmc14 104 2 the the DT cord-293304-kakxmc14 104 3 parameters parameter NNS cord-293304-kakxmc14 104 4 show show VBP cord-293304-kakxmc14 104 5 that that IN cord-293304-kakxmc14 104 6 the the DT cord-293304-kakxmc14 104 7 6LU7 6lu7 CD cord-293304-kakxmc14 104 8 is be VBZ cord-293304-kakxmc14 104 9 a a DT cord-293304-kakxmc14 104 10 stable stable JJ cord-293304-kakxmc14 104 11 , , , cord-293304-kakxmc14 104 12 hydrophobic hydrophobic JJ cord-293304-kakxmc14 104 13 protein protein NN cord-293304-kakxmc14 104 14 . . . cord-293304-kakxmc14 105 1 The the DT cord-293304-kakxmc14 105 2 6LU7 6lu7 CD cord-293304-kakxmc14 105 3 protein protein NN cord-293304-kakxmc14 105 4 consists consist VBZ cord-293304-kakxmc14 105 5 of of IN cord-293304-kakxmc14 105 6 three three CD cord-293304-kakxmc14 105 7 domains domain NNS cord-293304-kakxmc14 105 8 in in IN cord-293304-kakxmc14 105 9 which which WDT cord-293304-kakxmc14 105 10 the the DT cord-293304-kakxmc14 105 11 catalytically catalytically RB cord-293304-kakxmc14 105 12 active active JJ cord-293304-kakxmc14 105 13 site site NN cord-293304-kakxmc14 105 14 is be VBZ cord-293304-kakxmc14 105 15 present present JJ cord-293304-kakxmc14 105 16 between between IN cord-293304-kakxmc14 105 17 Domain Domain NNP cord-293304-kakxmc14 105 18 I I NNP cord-293304-kakxmc14 105 19 and and CC cord-293304-kakxmc14 105 20 II II NNP cord-293304-kakxmc14 105 21 . . . cord-293304-kakxmc14 106 1 Figure figure NN cord-293304-kakxmc14 106 2 S1 s1 NN cord-293304-kakxmc14 106 3 ( ( -LRB- cord-293304-kakxmc14 106 4 Supporting support VBG cord-293304-kakxmc14 106 5 Information information NN cord-293304-kakxmc14 106 6 ) ) -RRB- cord-293304-kakxmc14 106 7 shows show VBZ cord-293304-kakxmc14 106 8 the the DT cord-293304-kakxmc14 106 9 domains domain NNS cord-293304-kakxmc14 106 10 and and CC cord-293304-kakxmc14 106 11 active active JJ cord-293304-kakxmc14 106 12 site site NN cord-293304-kakxmc14 106 13 of of IN cord-293304-kakxmc14 106 14 6LU7 6lu7 CD cord-293304-kakxmc14 106 15 protein protein NN cord-293304-kakxmc14 106 16 bound bind VBN cord-293304-kakxmc14 106 17 with with IN cord-293304-kakxmc14 106 18 its -PRON- PRP$ cord-293304-kakxmc14 106 19 cocrystallized cocrystallize VBN cord-293304-kakxmc14 106 20 inhibitor inhibitor NN cord-293304-kakxmc14 106 21 N3 n3 NN cord-293304-kakxmc14 106 22 . . . cord-293304-kakxmc14 107 1 10,42 10,42 CD cord-293304-kakxmc14 108 1 The the DT cord-293304-kakxmc14 108 2 antimalarial antimalarial JJ cord-293304-kakxmc14 108 3 drugs drug NNS cord-293304-kakxmc14 108 4 chloroquine chloroquine NN cord-293304-kakxmc14 108 5 ( ( -LRB- cord-293304-kakxmc14 108 6 CQ CQ NNP cord-293304-kakxmc14 108 7 ) ) -RRB- cord-293304-kakxmc14 108 8 and and CC cord-293304-kakxmc14 108 9 its -PRON- PRP$ cord-293304-kakxmc14 108 10 hydroxy hydroxy NN cord-293304-kakxmc14 108 11 analog analog NN cord-293304-kakxmc14 108 12 hydroxychloroquine hydroxychloroquine NNP cord-293304-kakxmc14 108 13 ( ( -LRB- cord-293304-kakxmc14 108 14 HCQ HCQ NNP cord-293304-kakxmc14 108 15 ) ) -RRB- cord-293304-kakxmc14 108 16 are be VBP cord-293304-kakxmc14 108 17 currently currently RB cord-293304-kakxmc14 108 18 used use VBN cord-293304-kakxmc14 108 19 as as IN cord-293304-kakxmc14 108 20 drugs drug NNS cord-293304-kakxmc14 108 21 for for IN cord-293304-kakxmc14 108 22 the the DT cord-293304-kakxmc14 108 23 treatment treatment NN cord-293304-kakxmc14 108 24 of of IN cord-293304-kakxmc14 108 25 COVID-19 COVID-19 NNP cord-293304-kakxmc14 108 26 . . NNP cord-293304-kakxmc14 108 27 13 13 CD cord-293304-kakxmc14 108 28 , , , cord-293304-kakxmc14 108 29 17 17 CD cord-293304-kakxmc14 108 30 To to TO cord-293304-kakxmc14 108 31 compare compare VB cord-293304-kakxmc14 108 32 its -PRON- PRP$ cord-293304-kakxmc14 108 33 efficiency efficiency NN cord-293304-kakxmc14 108 34 as as IN cord-293304-kakxmc14 108 35 an an DT cord-293304-kakxmc14 108 36 anti anti JJ cord-293304-kakxmc14 108 37 - - JJ cord-293304-kakxmc14 108 38 COVID-19 covid-19 JJ cord-293304-kakxmc14 108 39 drug drug NN cord-293304-kakxmc14 108 40 to to IN cord-293304-kakxmc14 108 41 that that DT cord-293304-kakxmc14 108 42 of of IN cord-293304-kakxmc14 108 43 an an DT cord-293304-kakxmc14 108 44 antimalarial antimalarial JJ cord-293304-kakxmc14 108 45 drug drug NN cord-293304-kakxmc14 108 46 , , , cord-293304-kakxmc14 108 47 docking docking NN cord-293304-kakxmc14 108 48 studies study NNS cord-293304-kakxmc14 108 49 were be VBD cord-293304-kakxmc14 108 50 carried carry VBN cord-293304-kakxmc14 108 51 out out RP cord-293304-kakxmc14 108 52 for for IN cord-293304-kakxmc14 108 53 both both DT cord-293304-kakxmc14 108 54 targets target NNS cord-293304-kakxmc14 108 55 , , , cord-293304-kakxmc14 108 56 3CL 3CL NNP cord-293304-kakxmc14 108 57 pro pro JJ cord-293304-kakxmc14 108 58 and and CC cord-293304-kakxmc14 108 59 PfDHFR PfDHFR NNP cord-293304-kakxmc14 108 60 - - HYPH cord-293304-kakxmc14 108 61 TS TS NNP cord-293304-kakxmc14 108 62 . . . cord-293304-kakxmc14 109 1 Plasmodium plasmodium NN cord-293304-kakxmc14 109 2 falciparum falciparum NN cord-293304-kakxmc14 109 3 dihydrofolate dihydrofolate NNP cord-293304-kakxmc14 109 4 reductase reductase NN cord-293304-kakxmc14 109 5 thymidylate thymidylate NNP cord-293304-kakxmc14 110 1 synthase synthase NN cord-293304-kakxmc14 111 1 ( ( -LRB- cord-293304-kakxmc14 111 2 PfDHFR PfDHFR NNP cord-293304-kakxmc14 111 3 - - HYPH cord-293304-kakxmc14 111 4 TS TS NNP cord-293304-kakxmc14 111 5 ) ) -RRB- cord-293304-kakxmc14 111 6 is be VBZ cord-293304-kakxmc14 111 7 one one CD cord-293304-kakxmc14 111 8 of of IN cord-293304-kakxmc14 111 9 the the DT cord-293304-kakxmc14 111 10 important important JJ cord-293304-kakxmc14 111 11 targets target NNS cord-293304-kakxmc14 111 12 for for IN cord-293304-kakxmc14 111 13 antimalarial antimalarial JJ cord-293304-kakxmc14 111 14 drugs drug NNS cord-293304-kakxmc14 111 15 43 43 CD cord-293304-kakxmc14 111 16 , , , cord-293304-kakxmc14 111 17 44 44 CD cord-293304-kakxmc14 112 1 ( ( -LRB- cord-293304-kakxmc14 112 2 Supplementary supplementary JJ cord-293304-kakxmc14 112 3 Table Table NNP cord-293304-kakxmc14 112 4 S1 S1 NNP cord-293304-kakxmc14 112 5 ) ) -RRB- cord-293304-kakxmc14 112 6 . . . cord-293304-kakxmc14 113 1 It -PRON- PRP cord-293304-kakxmc14 113 2 was be VBD cord-293304-kakxmc14 113 3 identified identify VBN cord-293304-kakxmc14 113 4 that that IN cord-293304-kakxmc14 113 5 for for IN cord-293304-kakxmc14 113 6 both both CC cord-293304-kakxmc14 113 7 the the DT cord-293304-kakxmc14 113 8 targets target NNS cord-293304-kakxmc14 113 9 HCQ HCQ NNP cord-293304-kakxmc14 113 10 has have VBZ cord-293304-kakxmc14 113 11 lower low JJR cord-293304-kakxmc14 113 12 binding bind VBG cord-293304-kakxmc14 113 13 energy energy NN cord-293304-kakxmc14 113 14 owing owe VBG cord-293304-kakxmc14 113 15 to to IN cord-293304-kakxmc14 113 16 its -PRON- PRP$ cord-293304-kakxmc14 113 17 higher high JJR cord-293304-kakxmc14 113 18 binding bind VBG cord-293304-kakxmc14 113 19 affinity affinity NN cord-293304-kakxmc14 113 20 to to IN cord-293304-kakxmc14 113 21 the the DT cord-293304-kakxmc14 113 22 protein protein NN cord-293304-kakxmc14 113 23 . . . cord-293304-kakxmc14 114 1 Both both DT cord-293304-kakxmc14 114 2 the the DT cord-293304-kakxmc14 114 3 drugs drug NNS cord-293304-kakxmc14 114 4 are be VBP cord-293304-kakxmc14 114 5 more more RBR cord-293304-kakxmc14 114 6 active active JJ cord-293304-kakxmc14 114 7 on on IN cord-293304-kakxmc14 114 8 PfDHFR PfDHFR NNP cord-293304-kakxmc14 114 9 - - HYPH cord-293304-kakxmc14 114 10 TS TS NNP cord-293304-kakxmc14 114 11 than than IN cord-293304-kakxmc14 114 12 3CL 3CL NNP cord-293304-kakxmc14 114 13 pro pro NN cord-293304-kakxmc14 114 14 . . . cord-293304-kakxmc14 115 1 The the DT cord-293304-kakxmc14 115 2 2D 2d NN cord-293304-kakxmc14 115 3 interaction interaction NN cord-293304-kakxmc14 115 4 diagrams diagram NNS cord-293304-kakxmc14 115 5 and and CC cord-293304-kakxmc14 115 6 docked dock VBN cord-293304-kakxmc14 115 7 poses pose NNS cord-293304-kakxmc14 115 8 of of IN cord-293304-kakxmc14 115 9 CQ CQ NNP cord-293304-kakxmc14 115 10 and and CC cord-293304-kakxmc14 115 11 HCQ HCQ NNP cord-293304-kakxmc14 115 12 with with IN cord-293304-kakxmc14 115 13 the the DT cord-293304-kakxmc14 115 14 target target NN cord-293304-kakxmc14 115 15 3CL 3cl CD cord-293304-kakxmc14 115 16 pro pro NN cord-293304-kakxmc14 115 17 are be VBP cord-293304-kakxmc14 115 18 given give VBN cord-293304-kakxmc14 115 19 in in IN cord-293304-kakxmc14 115 20 Figures figure NNS cord-293304-kakxmc14 115 21 S2 S2 NNP cord-293304-kakxmc14 115 22 and and CC cord-293304-kakxmc14 115 23 S3 S3 NNP cord-293304-kakxmc14 115 24 , , , cord-293304-kakxmc14 115 25 respectively respectively RB cord-293304-kakxmc14 115 26 . . . cord-293304-kakxmc14 116 1 HCQ HCQ NNP cord-293304-kakxmc14 116 2 fits fit VBZ cord-293304-kakxmc14 116 3 more more RBR cord-293304-kakxmc14 116 4 perfectly perfectly RB cord-293304-kakxmc14 116 5 to to IN cord-293304-kakxmc14 116 6 the the DT cord-293304-kakxmc14 116 7 active active JJ cord-293304-kakxmc14 116 8 site site NN cord-293304-kakxmc14 116 9 of of IN cord-293304-kakxmc14 116 10 the the DT cord-293304-kakxmc14 116 11 target target NN cord-293304-kakxmc14 116 12 than than IN cord-293304-kakxmc14 116 13 CQ CQ NNP cord-293304-kakxmc14 116 14 , , , cord-293304-kakxmc14 116 15 and and CC cord-293304-kakxmc14 116 16 hence hence RB cord-293304-kakxmc14 116 17 , , , cord-293304-kakxmc14 116 18 HCQ HCQ NNP cord-293304-kakxmc14 116 19 has have VBZ cord-293304-kakxmc14 116 20 high high JJ cord-293304-kakxmc14 116 21 negative negative JJ cord-293304-kakxmc14 116 22 binding bind VBG cord-293304-kakxmc14 116 23 energy energy NN cord-293304-kakxmc14 116 24 , , , cord-293304-kakxmc14 116 25 which which WDT cord-293304-kakxmc14 116 26 imparts impart VBZ cord-293304-kakxmc14 116 27 more more JJR cord-293304-kakxmc14 116 28 stability stability NN cord-293304-kakxmc14 116 29 to to IN cord-293304-kakxmc14 116 30 the the DT cord-293304-kakxmc14 116 31 docked dock VBN cord-293304-kakxmc14 116 32 complex complex NN cord-293304-kakxmc14 116 33 ( ( -LRB- cord-293304-kakxmc14 116 34 Supplementary supplementary JJ cord-293304-kakxmc14 116 35 Figure figure NN cord-293304-kakxmc14 116 36 S3 s3 NN cord-293304-kakxmc14 116 37 ) ) -RRB- cord-293304-kakxmc14 116 38 . . . cord-293304-kakxmc14 117 1 CQ CQ NNP cord-293304-kakxmc14 117 2 forms form VBZ cord-293304-kakxmc14 117 3 three three CD cord-293304-kakxmc14 117 4 hydrogen hydrogen NN cord-293304-kakxmc14 117 5 bonds bond NNS cord-293304-kakxmc14 117 6 with with IN cord-293304-kakxmc14 117 7 Gly143 gly143 CD cord-293304-kakxmc14 117 8 , , , cord-293304-kakxmc14 117 9 Cys145 cys145 UH cord-293304-kakxmc14 117 10 , , , cord-293304-kakxmc14 117 11 and and CC cord-293304-kakxmc14 117 12 His164 His164 NNP cord-293304-kakxmc14 117 13 ; ; : cord-293304-kakxmc14 117 14 van van NNP cord-293304-kakxmc14 117 15 der der NNP cord-293304-kakxmc14 117 16 Waals Waals NNP cord-293304-kakxmc14 117 17 interaction interaction NN cord-293304-kakxmc14 117 18 with with IN cord-293304-kakxmc14 117 19 Asn142 Asn142 . cord-293304-kakxmc14 118 1 and and CC cord-293304-kakxmc14 118 2 Gln189 gln189 ADD cord-293304-kakxmc14 118 3 ; ; : cord-293304-kakxmc14 118 4 πalkyl πalkyl NNP cord-293304-kakxmc14 118 5 interaction interaction NN cord-293304-kakxmc14 118 6 with with IN cord-293304-kakxmc14 118 7 His163 his163 CD cord-293304-kakxmc14 118 8 ; ; : cord-293304-kakxmc14 118 9 and and CC cord-293304-kakxmc14 118 10 two two CD cord-293304-kakxmc14 118 11 π π NN cord-293304-kakxmc14 118 12 - - HYPH cord-293304-kakxmc14 118 13 donor donor NN cord-293304-kakxmc14 118 14 hydrogen hydrogen NN cord-293304-kakxmc14 118 15 bond bond NN cord-293304-kakxmc14 118 16 interactions interaction NNS cord-293304-kakxmc14 118 17 with with IN cord-293304-kakxmc14 118 18 the the DT cord-293304-kakxmc14 118 19 −SH −sh CD cord-293304-kakxmc14 118 20 group group NNP cord-293304-kakxmc14 118 21 of of IN cord-293304-kakxmc14 118 22 Cys145 Cys145 NNP cord-293304-kakxmc14 118 23 at at IN cord-293304-kakxmc14 118 24 distances distance NNS cord-293304-kakxmc14 118 25 3.78 3.78 CD cord-293304-kakxmc14 118 26 Å å NN cord-293304-kakxmc14 118 27 , , , cord-293304-kakxmc14 118 28 5.16 5.16 CD cord-293304-kakxmc14 118 29 Å å NN cord-293304-kakxmc14 118 30 , , , cord-293304-kakxmc14 118 31 5.31 5.31 CD cord-293304-kakxmc14 118 32 Å å NN cord-293304-kakxmc14 118 33 , , , cord-293304-kakxmc14 118 34 4.30 4.30 CD cord-293304-kakxmc14 118 35 Å å NN cord-293304-kakxmc14 118 36 , , , cord-293304-kakxmc14 118 37 5.10 5.10 CD cord-293304-kakxmc14 118 38 Å å NN cord-293304-kakxmc14 118 39 , , , cord-293304-kakxmc14 118 40 6.63 6.63 CD cord-293304-kakxmc14 118 41 Å å NN cord-293304-kakxmc14 118 42 , , , cord-293304-kakxmc14 118 43 4.93 4.93 CD cord-293304-kakxmc14 118 44 Å å NN cord-293304-kakxmc14 118 45 , , , cord-293304-kakxmc14 118 46 and and CC cord-293304-kakxmc14 118 47 4.95 4.95 CD cord-293304-kakxmc14 118 48 Å å NN cord-293304-kakxmc14 118 49 , , , cord-293304-kakxmc14 118 50 respectively respectively RB cord-293304-kakxmc14 118 51 ( ( -LRB- cord-293304-kakxmc14 118 52 Supplementary supplementary JJ cord-293304-kakxmc14 118 53 Figure figure NN cord-293304-kakxmc14 118 54 S2a s2a NN cord-293304-kakxmc14 118 55 , , , cord-293304-kakxmc14 118 56 Table table NN cord-293304-kakxmc14 118 57 2 2 CD cord-293304-kakxmc14 118 58 ) ) -RRB- cord-293304-kakxmc14 118 59 . . . cord-293304-kakxmc14 119 1 The the DT cord-293304-kakxmc14 119 2 Cys145-His41 cys145-his41 NN cord-293304-kakxmc14 119 3 diad diad NNP cord-293304-kakxmc14 119 4 is be VBZ cord-293304-kakxmc14 119 5 blocked block VBN cord-293304-kakxmc14 119 6 by by IN cord-293304-kakxmc14 119 7 these these DT cord-293304-kakxmc14 119 8 interactions interaction NNS cord-293304-kakxmc14 119 9 . . . cord-293304-kakxmc14 120 1 The the DT cord-293304-kakxmc14 120 2 interaction interaction NN cord-293304-kakxmc14 120 3 of of IN cord-293304-kakxmc14 120 4 alkyl alkyl NNP cord-293304-kakxmc14 120 5 group group NN cord-293304-kakxmc14 120 6 of of IN cord-293304-kakxmc14 120 7 the the DT cord-293304-kakxmc14 120 8 CQ CQ NNP cord-293304-kakxmc14 120 9 with with IN cord-293304-kakxmc14 120 10 the the DT cord-293304-kakxmc14 120 11 π π NN cord-293304-kakxmc14 120 12 - - HYPH cord-293304-kakxmc14 120 13 cloud cloud NN cord-293304-kakxmc14 120 14 of of IN cord-293304-kakxmc14 120 15 imidazole imidazole JJ cord-293304-kakxmc14 120 16 ring ring NN cord-293304-kakxmc14 120 17 of of IN cord-293304-kakxmc14 120 18 histidine histidine NN cord-293304-kakxmc14 120 19 may may MD cord-293304-kakxmc14 120 20 disturb disturb VB cord-293304-kakxmc14 120 21 the the DT cord-293304-kakxmc14 120 22 delocalization delocalization NN cord-293304-kakxmc14 120 23 of of IN cord-293304-kakxmc14 120 24 π π CD cord-293304-kakxmc14 120 25 electrons electron NNS cord-293304-kakxmc14 120 26 . . . cord-293304-kakxmc14 121 1 The the DT cord-293304-kakxmc14 121 2 basicity basicity NN cord-293304-kakxmc14 121 3 of of IN cord-293304-kakxmc14 121 4 the the DT cord-293304-kakxmc14 121 5 imidazole imidazole JJ cord-293304-kakxmc14 121 6 ring ring NN cord-293304-kakxmc14 121 7 is be VBZ cord-293304-kakxmc14 121 8 due due JJ cord-293304-kakxmc14 121 9 to to IN cord-293304-kakxmc14 121 10 the the DT cord-293304-kakxmc14 121 11 resonance resonance NN cord-293304-kakxmc14 121 12 stabilization stabilization NN cord-293304-kakxmc14 121 13 of of IN cord-293304-kakxmc14 121 14 the the DT cord-293304-kakxmc14 121 15 positive positive JJ cord-293304-kakxmc14 121 16 imidazolium imidazolium NN cord-293304-kakxmc14 121 17 ion ion NN cord-293304-kakxmc14 121 18 ( ( -LRB- cord-293304-kakxmc14 121 19 Figure figure NN cord-293304-kakxmc14 121 20 _SP cord-293304-kakxmc14 121 21 3 3 CD cord-293304-kakxmc14 121 22 ) ) -RRB- cord-293304-kakxmc14 121 23 . . . cord-293304-kakxmc14 122 1 45 45 CD cord-293304-kakxmc14 123 1 The the DT cord-293304-kakxmc14 123 2 alkyl−π alkyl−π JJ cord-293304-kakxmc14 123 3 interaction interaction NN cord-293304-kakxmc14 123 4 of of IN cord-293304-kakxmc14 123 5 the the DT cord-293304-kakxmc14 123 6 alkyl alkyl JJ cord-293304-kakxmc14 123 7 donor donor NN cord-293304-kakxmc14 123 8 and and CC cord-293304-kakxmc14 123 9 aromatic aromatic JJ cord-293304-kakxmc14 123 10 acceptor acceptor NN cord-293304-kakxmc14 123 11 increases increase VBZ cord-293304-kakxmc14 123 12 the the DT cord-293304-kakxmc14 123 13 stability stability NN cord-293304-kakxmc14 123 14 of of IN cord-293304-kakxmc14 123 15 the the DT cord-293304-kakxmc14 123 16 docked dock VBN cord-293304-kakxmc14 123 17 complex complex NN cord-293304-kakxmc14 123 18 as as RB cord-293304-kakxmc14 123 19 well well RB cord-293304-kakxmc14 123 20 as as IN cord-293304-kakxmc14 123 21 reduces reduce VBZ cord-293304-kakxmc14 123 22 the the DT cord-293304-kakxmc14 123 23 ability ability NN cord-293304-kakxmc14 123 24 of of IN cord-293304-kakxmc14 123 25 the the DT cord-293304-kakxmc14 123 26 imidazole imidazole JJ cord-293304-kakxmc14 123 27 ring ring NN cord-293304-kakxmc14 123 28 to to TO cord-293304-kakxmc14 123 29 accept accept VB cord-293304-kakxmc14 123 30 H h NN cord-293304-kakxmc14 123 31 + + CC cord-293304-kakxmc14 123 32 from from IN cord-293304-kakxmc14 123 33 the the DT cord-293304-kakxmc14 123 34 Cys Cys NNP cord-293304-kakxmc14 123 35 residue residue NN cord-293304-kakxmc14 123 36 , , , cord-293304-kakxmc14 123 37 which which WDT cord-293304-kakxmc14 123 38 is be VBZ cord-293304-kakxmc14 123 39 the the DT cord-293304-kakxmc14 123 40 initial initial JJ cord-293304-kakxmc14 123 41 step step NN cord-293304-kakxmc14 123 42 in in IN cord-293304-kakxmc14 123 43 the the DT cord-293304-kakxmc14 123 44 catalytic catalytic JJ cord-293304-kakxmc14 123 45 cycle cycle NN cord-293304-kakxmc14 123 46 in in IN cord-293304-kakxmc14 123 47 proteolysis proteolysis NN cord-293304-kakxmc14 123 48 , , , cord-293304-kakxmc14 123 49 thereby thereby RB cord-293304-kakxmc14 123 50 reducing reduce VBG cord-293304-kakxmc14 123 51 the the DT cord-293304-kakxmc14 123 52 activity activity NN cord-293304-kakxmc14 123 53 . . . cord-293304-kakxmc14 124 1 46 46 CD cord-293304-kakxmc14 124 2 , , , cord-293304-kakxmc14 124 3 11 11 CD cord-293304-kakxmc14 124 4 HCQ HCQ NNP cord-293304-kakxmc14 124 5 forms form NNS cord-293304-kakxmc14 124 6 two two CD cord-293304-kakxmc14 124 7 hydrogen hydrogen NN cord-293304-kakxmc14 124 8 bonds bond NNS cord-293304-kakxmc14 124 9 with with IN cord-293304-kakxmc14 124 10 Phe140 phe140 CD cord-293304-kakxmc14 124 11 , , , cord-293304-kakxmc14 124 12 and and CC cord-293304-kakxmc14 124 13 one one CD cord-293304-kakxmc14 124 14 each each DT cord-293304-kakxmc14 124 15 with with IN cord-293304-kakxmc14 124 16 Asn142 Asn142 NFP cord-293304-kakxmc14 124 17 , , , cord-293304-kakxmc14 124 18 Ser144 ser144 CD cord-293304-kakxmc14 124 19 , , , cord-293304-kakxmc14 124 20 and and CC cord-293304-kakxmc14 124 21 Glu166 glu166 DT cord-293304-kakxmc14 124 22 at at IN cord-293304-kakxmc14 124 23 distances distance NNS cord-293304-kakxmc14 124 24 5.15 5.15 CD cord-293304-kakxmc14 124 25 Å å NN cord-293304-kakxmc14 124 26 , , , cord-293304-kakxmc14 124 27 5.0 5.0 CD cord-293304-kakxmc14 124 28 Å å NN cord-293304-kakxmc14 124 29 , , , cord-293304-kakxmc14 124 30 3.94 3.94 CD cord-293304-kakxmc14 124 31 Å å NN cord-293304-kakxmc14 124 32 , , , cord-293304-kakxmc14 124 33 4.31 4.31 CD cord-293304-kakxmc14 124 34 Å å NN cord-293304-kakxmc14 124 35 , , , cord-293304-kakxmc14 124 36 and and CC cord-293304-kakxmc14 124 37 5.04 5.04 CD cord-293304-kakxmc14 124 38 Å å NN cord-293304-kakxmc14 124 39 , , , cord-293304-kakxmc14 124 40 respectively respectively RB cord-293304-kakxmc14 124 41 . . . cord-293304-kakxmc14 125 1 It -PRON- PRP cord-293304-kakxmc14 125 2 forms form VBZ cord-293304-kakxmc14 125 3 two two CD cord-293304-kakxmc14 125 4 van van NNP cord-293304-kakxmc14 125 5 der der NNP cord-293304-kakxmc14 125 6 Waals Waals NNP cord-293304-kakxmc14 125 7 interactions interaction NNS cord-293304-kakxmc14 125 8 with with IN cord-293304-kakxmc14 125 9 Phe140 phe140 CD cord-293304-kakxmc14 125 10 , , , cord-293304-kakxmc14 125 11 and and CC cord-293304-kakxmc14 125 12 one one CD cord-293304-kakxmc14 125 13 each each DT cord-293304-kakxmc14 125 14 with with IN cord-293304-kakxmc14 125 15 Glu166 glu166 JJ cord-293304-kakxmc14 125 16 and and CC cord-293304-kakxmc14 125 17 His172 his172 CD cord-293304-kakxmc14 125 18 at at IN cord-293304-kakxmc14 125 19 distances distance NNS cord-293304-kakxmc14 125 20 6.59 6.59 CD cord-293304-kakxmc14 125 21 Å å NN cord-293304-kakxmc14 125 22 , , , cord-293304-kakxmc14 125 23 7.12 7.12 CD cord-293304-kakxmc14 125 24 Å å NN cord-293304-kakxmc14 125 25 , , , cord-293304-kakxmc14 125 26 5.30 5.30 CD cord-293304-kakxmc14 125 27 Å å NN cord-293304-kakxmc14 125 28 , , , cord-293304-kakxmc14 125 29 and and CC cord-293304-kakxmc14 125 30 5.63 5.63 CD cord-293304-kakxmc14 125 31 Å å NN cord-293304-kakxmc14 125 32 , , , cord-293304-kakxmc14 125 33 respectively respectively RB cord-293304-kakxmc14 125 34 . . . cord-293304-kakxmc14 126 1 It -PRON- PRP cord-293304-kakxmc14 126 2 also also RB cord-293304-kakxmc14 126 3 forms form VBZ cord-293304-kakxmc14 126 4 a a DT cord-293304-kakxmc14 126 5 π−σ π−σ NN cord-293304-kakxmc14 126 6 interaction interaction NN cord-293304-kakxmc14 126 7 with with IN cord-293304-kakxmc14 126 8 Asn142 Asn142 NFP cord-293304-kakxmc14 126 9 and and CC cord-293304-kakxmc14 126 10 two two CD cord-293304-kakxmc14 127 1 π−alkyl π−alkyl NFP cord-293304-kakxmc14 127 2 interactions interaction NNS cord-293304-kakxmc14 127 3 with with IN cord-293304-kakxmc14 127 4 Cys145 cys145 ADD cord-293304-kakxmc14 127 5 ( ( -LRB- cord-293304-kakxmc14 127 6 Supplementary Supplementary NNP cord-293304-kakxmc14 127 7 Figure Figure NNP cord-293304-kakxmc14 127 8 _SP cord-293304-kakxmc14 127 9 S2b s2b NN cord-293304-kakxmc14 127 10 , , , cord-293304-kakxmc14 127 11 Table table NN cord-293304-kakxmc14 127 12 2 2 CD cord-293304-kakxmc14 127 13 ) ) -RRB- cord-293304-kakxmc14 127 14 . . . cord-293304-kakxmc14 128 1 The the DT cord-293304-kakxmc14 128 2 π−alkyl π−alkyl NFP cord-293304-kakxmc14 128 3 interaction interaction NN cord-293304-kakxmc14 128 4 with with IN cord-293304-kakxmc14 128 5 Cys145 cys145 ADD cord-293304-kakxmc14 128 6 may may MD cord-293304-kakxmc14 128 7 disturb disturb VB cord-293304-kakxmc14 128 8 the the DT cord-293304-kakxmc14 128 9 conformation conformation NN cord-293304-kakxmc14 128 10 required require VBN cord-293304-kakxmc14 128 11 for for IN cord-293304-kakxmc14 128 12 the the DT cord-293304-kakxmc14 128 13 interaction interaction NN cord-293304-kakxmc14 128 14 with with IN cord-293304-kakxmc14 128 15 polypeptide polypeptide NN cord-293304-kakxmc14 128 16 in in IN cord-293304-kakxmc14 128 17 the the DT cord-293304-kakxmc14 128 18 catalytic catalytic JJ cord-293304-kakxmc14 128 19 cycle cycle NN cord-293304-kakxmc14 128 20 . . . cord-293304-kakxmc14 129 1 There there EX cord-293304-kakxmc14 129 2 have have VBP cord-293304-kakxmc14 129 3 been be VBN cord-293304-kakxmc14 129 4 reports report NNS cord-293304-kakxmc14 129 5 about about IN cord-293304-kakxmc14 129 6 the the DT cord-293304-kakxmc14 129 7 entry entry NN cord-293304-kakxmc14 129 8 of of IN cord-293304-kakxmc14 129 9 SARS SARS NNP cord-293304-kakxmc14 129 10 coronavirus coronavirus NN cord-293304-kakxmc14 129 11 as as IN cord-293304-kakxmc14 129 12 acidic acidic JJ cord-293304-kakxmc14 129 13 pH pH NNP cord-293304-kakxmc14 129 14 dependent dependent JJ cord-293304-kakxmc14 129 15 in in IN cord-293304-kakxmc14 129 16 which which WDT cord-293304-kakxmc14 129 17 the the DT cord-293304-kakxmc14 129 18 activation activation NN cord-293304-kakxmc14 129 19 occurs occur VBZ cord-293304-kakxmc14 129 20 by by IN cord-293304-kakxmc14 129 21 the the DT cord-293304-kakxmc14 129 22 fusion fusion NN cord-293304-kakxmc14 129 23 of of IN cord-293304-kakxmc14 129 24 the the DT cord-293304-kakxmc14 129 25 membranes membrane NNS cord-293304-kakxmc14 129 26 of of IN cord-293304-kakxmc14 129 27 virus virus NN cord-293304-kakxmc14 129 28 and and CC cord-293304-kakxmc14 129 29 cellular cellular JJ cord-293304-kakxmc14 129 30 endosomes endosome NNS cord-293304-kakxmc14 129 31 and and CC cord-293304-kakxmc14 129 32 viral viral JJ cord-293304-kakxmc14 129 33 genome genome NN cord-293304-kakxmc14 129 34 enters enter VBZ cord-293304-kakxmc14 129 35 the the DT cord-293304-kakxmc14 129 36 cytoplasm cytoplasm NN cord-293304-kakxmc14 129 37 . . . cord-293304-kakxmc14 130 1 47 47 CD cord-293304-kakxmc14 130 2 , , , cord-293304-kakxmc14 130 3 48 48 CD cord-293304-kakxmc14 130 4 , , , cord-293304-kakxmc14 130 5 15 15 CD cord-293304-kakxmc14 131 1 The the DT cord-293304-kakxmc14 131 2 presence presence NN cord-293304-kakxmc14 131 3 of of IN cord-293304-kakxmc14 131 4 amino amino NN cord-293304-kakxmc14 131 5 side side NN cord-293304-kakxmc14 131 6 chain chain NN cord-293304-kakxmc14 131 7 in in IN cord-293304-kakxmc14 131 8 CQ CQ NNP cord-293304-kakxmc14 131 9 and and CC cord-293304-kakxmc14 131 10 HCQ HCQ NNP cord-293304-kakxmc14 131 11 makes make VBZ cord-293304-kakxmc14 131 12 them -PRON- PRP cord-293304-kakxmc14 131 13 basic basic JJ cord-293304-kakxmc14 131 14 and and CC cord-293304-kakxmc14 131 15 increases increase VBZ cord-293304-kakxmc14 131 16 the the DT cord-293304-kakxmc14 131 17 pH ph NN cord-293304-kakxmc14 131 18 of of IN cord-293304-kakxmc14 131 19 cell cell NN cord-293304-kakxmc14 131 20 organelles organelle NNS cord-293304-kakxmc14 131 21 like like IN cord-293304-kakxmc14 131 22 endosomes endosome NNS cord-293304-kakxmc14 131 23 and and CC cord-293304-kakxmc14 131 24 lysosomes lysosome NNS cord-293304-kakxmc14 131 25 , , , cord-293304-kakxmc14 131 26 which which WDT cord-293304-kakxmc14 131 27 interferes interfere VBZ cord-293304-kakxmc14 131 28 with with IN cord-293304-kakxmc14 131 29 the the DT cord-293304-kakxmc14 131 30 replication replication NN cord-293304-kakxmc14 131 31 and and CC cord-293304-kakxmc14 131 32 inhibits inhibit VBZ cord-293304-kakxmc14 131 33 the the DT cord-293304-kakxmc14 131 34 viral viral JJ cord-293304-kakxmc14 131 35 activation activation NN cord-293304-kakxmc14 131 36 . . . cord-293304-kakxmc14 132 1 17,15 17,15 CD cord-293304-kakxmc14 133 1 To to TO cord-293304-kakxmc14 133 2 find find VB cord-293304-kakxmc14 133 3 more more RBR cord-293304-kakxmc14 133 4 potent potent JJ cord-293304-kakxmc14 133 5 inhibitors inhibitor NNS cord-293304-kakxmc14 133 6 of of IN cord-293304-kakxmc14 133 7 3CL 3CL NNP cord-293304-kakxmc14 133 8 pro pro JJ cord-293304-kakxmc14 133 9 , , , cord-293304-kakxmc14 133 10 analogs analog NNS cord-293304-kakxmc14 133 11 of of IN cord-293304-kakxmc14 133 12 chloroquine chloroquine NN cord-293304-kakxmc14 133 13 were be VBD cord-293304-kakxmc14 133 14 subjected subject VBN cord-293304-kakxmc14 133 15 to to IN cord-293304-kakxmc14 133 16 molecular molecular JJ cord-293304-kakxmc14 133 17 docking docking NN cord-293304-kakxmc14 133 18 , , , cord-293304-kakxmc14 133 19 which which WDT cord-293304-kakxmc14 133 20 were be VBD cord-293304-kakxmc14 133 21 obtained obtain VBN cord-293304-kakxmc14 133 22 from from IN cord-293304-kakxmc14 133 23 literature literature NN cord-293304-kakxmc14 133 24 , , , cord-293304-kakxmc14 133 25 Pubchem Pubchem NNP cord-293304-kakxmc14 133 26 database database NN cord-293304-kakxmc14 133 27 , , , cord-293304-kakxmc14 133 28 by by IN cord-293304-kakxmc14 133 29 replacement replacement NN cord-293304-kakxmc14 133 30 with with IN cord-293304-kakxmc14 133 31 isosteres isosteres NNP cord-293304-kakxmc14 133 32 and and CC cord-293304-kakxmc14 133 33 functional functional JJ cord-293304-kakxmc14 133 34 group group NN cord-293304-kakxmc14 133 35 variations variation NNS cord-293304-kakxmc14 133 36 18−20 18−20 CD cord-293304-kakxmc14 133 37 of of IN cord-293304-kakxmc14 133 38 chloroquine chloroquine NN cord-293304-kakxmc14 133 39 ( ( -LRB- cord-293304-kakxmc14 133 40 Supplementary Supplementary NNP cord-293304-kakxmc14 133 41 Tables Tables NNPS cord-293304-kakxmc14 133 42 S2 S2 NNP cord-293304-kakxmc14 133 43 and and CC cord-293304-kakxmc14 133 44 _SP cord-293304-kakxmc14 133 45 S3 S3 NNP cord-293304-kakxmc14 133 46 ) ) -RRB- cord-293304-kakxmc14 133 47 . . . cord-293304-kakxmc14 134 1 The the DT cord-293304-kakxmc14 134 2 binding bind VBG cord-293304-kakxmc14 134 3 energy energy NN cord-293304-kakxmc14 134 4 thus thus RB cord-293304-kakxmc14 134 5 obtained obtain VBN cord-293304-kakxmc14 134 6 from from IN cord-293304-kakxmc14 134 7 docking docking NN cord-293304-kakxmc14 134 8 with with IN cord-293304-kakxmc14 134 9 6LU7 6lu7 CD cord-293304-kakxmc14 134 10 protein protein NN cord-293304-kakxmc14 134 11 is be VBZ cord-293304-kakxmc14 134 12 given give VBN cord-293304-kakxmc14 134 13 in in IN cord-293304-kakxmc14 134 14 Table Table NNP cord-293304-kakxmc14 134 15 2 2 CD cord-293304-kakxmc14 134 16 . . . cord-293304-kakxmc14 135 1 All all PDT cord-293304-kakxmc14 135 2 the the DT cord-293304-kakxmc14 135 3 chloroquine chloroquine NNP cord-293304-kakxmc14 135 4 analogs analog NNS cord-293304-kakxmc14 135 5 show show VBP cord-293304-kakxmc14 135 6 some some DT cord-293304-kakxmc14 135 7 of of IN cord-293304-kakxmc14 135 8 the the DT cord-293304-kakxmc14 135 9 key key JJ cord-293304-kakxmc14 135 10 interactions interaction NNS cord-293304-kakxmc14 135 11 with with IN cord-293304-kakxmc14 135 12 the the DT cord-293304-kakxmc14 135 13 active active JJ cord-293304-kakxmc14 135 14 site site NN cord-293304-kakxmc14 135 15 residues residue NNS cord-293304-kakxmc14 135 16 . . . cord-293304-kakxmc14 136 1 The the DT cord-293304-kakxmc14 136 2 negative negative JJ cord-293304-kakxmc14 136 3 value value NN cord-293304-kakxmc14 136 4 shows show VBZ cord-293304-kakxmc14 136 5 a a DT cord-293304-kakxmc14 136 6 release release NN cord-293304-kakxmc14 136 7 of of IN cord-293304-kakxmc14 136 8 energy energy NN cord-293304-kakxmc14 136 9 while while IN cord-293304-kakxmc14 136 10 forming form VBG cord-293304-kakxmc14 136 11 a a DT cord-293304-kakxmc14 136 12 protein−ligand protein−ligand CD cord-293304-kakxmc14 136 13 docked dock VBN cord-293304-kakxmc14 136 14 complex complex NN cord-293304-kakxmc14 136 15 , , , cord-293304-kakxmc14 136 16 which which WDT cord-293304-kakxmc14 136 17 imparts impart VBZ cord-293304-kakxmc14 136 18 stability stability NN cord-293304-kakxmc14 136 19 . . . cord-293304-kakxmc14 137 1 The the DT cord-293304-kakxmc14 137 2 more more RBR cord-293304-kakxmc14 137 3 negative negative JJ cord-293304-kakxmc14 137 4 the the DT cord-293304-kakxmc14 137 5 binding bind VBG cord-293304-kakxmc14 137 6 energy energy NN cord-293304-kakxmc14 137 7 , , , cord-293304-kakxmc14 137 8 the the DT cord-293304-kakxmc14 137 9 higher high JJR cord-293304-kakxmc14 137 10 will will MD cord-293304-kakxmc14 137 11 be be VB cord-293304-kakxmc14 137 12 the the DT cord-293304-kakxmc14 137 13 stability stability NN cord-293304-kakxmc14 137 14 and and CC cord-293304-kakxmc14 137 15 binding bind VBG cord-293304-kakxmc14 137 16 affinity affinity NN cord-293304-kakxmc14 137 17 . . . cord-293304-kakxmc14 138 1 The the DT cord-293304-kakxmc14 138 2 compounds compound NNS cord-293304-kakxmc14 138 3 29 29 CD cord-293304-kakxmc14 138 4 , , , cord-293304-kakxmc14 138 5 25 25 CD cord-293304-kakxmc14 138 6 , , , cord-293304-kakxmc14 138 7 22 22 CD cord-293304-kakxmc14 138 8 , , , cord-293304-kakxmc14 138 9 8 8 CD cord-293304-kakxmc14 138 10 , , , cord-293304-kakxmc14 138 11 24 24 CD cord-293304-kakxmc14 138 12 , , , cord-293304-kakxmc14 138 13 and and CC cord-293304-kakxmc14 138 14 10 10 CD cord-293304-kakxmc14 138 15 have have VBP cord-293304-kakxmc14 138 16 more more RBR cord-293304-kakxmc14 138 17 negative negative JJ cord-293304-kakxmc14 138 18 binding bind VBG cord-293304-kakxmc14 138 19 energy energy NN cord-293304-kakxmc14 138 20 than than IN cord-293304-kakxmc14 138 21 CQ CQ NNP cord-293304-kakxmc14 138 22 and and CC cord-293304-kakxmc14 138 23 HCQ HCQ NNP cord-293304-kakxmc14 138 24 . . . cord-293304-kakxmc14 139 1 Their -PRON- PRP$ cord-293304-kakxmc14 139 2 2D 2d NN cord-293304-kakxmc14 139 3 ligand ligand NN cord-293304-kakxmc14 139 4 interaction interaction NN cord-293304-kakxmc14 139 5 diagrams diagram NNS cord-293304-kakxmc14 139 6 are be VBP cord-293304-kakxmc14 139 7 shown show VBN cord-293304-kakxmc14 139 8 in in IN cord-293304-kakxmc14 139 9 Supplementary Supplementary NNP cord-293304-kakxmc14 139 10 Figure Figure NNP cord-293304-kakxmc14 139 11 S4 s4 NN cord-293304-kakxmc14 139 12 . . . cord-293304-kakxmc14 140 1 From from IN cord-293304-kakxmc14 140 2 the the DT cord-293304-kakxmc14 140 3 structures structure NNS cord-293304-kakxmc14 140 4 of of IN cord-293304-kakxmc14 140 5 these these DT cord-293304-kakxmc14 140 6 six six CD cord-293304-kakxmc14 140 7 compounds compound NNS cord-293304-kakxmc14 140 8 , , , cord-293304-kakxmc14 140 9 we -PRON- PRP cord-293304-kakxmc14 140 10 can can MD cord-293304-kakxmc14 140 11 infer infer VB cord-293304-kakxmc14 140 12 that that IN cord-293304-kakxmc14 140 13 if if IN cord-293304-kakxmc14 140 14 the the DT cord-293304-kakxmc14 140 15 side side NN cord-293304-kakxmc14 140 16 chain chain NN cord-293304-kakxmc14 140 17 has have VBZ cord-293304-kakxmc14 140 18 an an DT cord-293304-kakxmc14 140 19 extra extra JJ cord-293304-kakxmc14 140 20 −NH −nh NN cord-293304-kakxmc14 140 21 group group NN cord-293304-kakxmc14 140 22 , , , cord-293304-kakxmc14 140 23 it -PRON- PRP cord-293304-kakxmc14 140 24 can can MD cord-293304-kakxmc14 140 25 introduce introduce VB cord-293304-kakxmc14 140 26 additional additional JJ cord-293304-kakxmc14 140 27 hydrogen hydrogen NN cord-293304-kakxmc14 140 28 bonds bond NNS cord-293304-kakxmc14 140 29 , , , cord-293304-kakxmc14 140 30 which which WDT cord-293304-kakxmc14 140 31 results result VBZ cord-293304-kakxmc14 140 32 in in IN cord-293304-kakxmc14 140 33 a a DT cord-293304-kakxmc14 140 34 decrease decrease NN cord-293304-kakxmc14 140 35 in in IN cord-293304-kakxmc14 140 36 binding bind VBG cord-293304-kakxmc14 140 37 energy energy NN cord-293304-kakxmc14 140 38 . . . cord-293304-kakxmc14 141 1 In in IN cord-293304-kakxmc14 141 2 compound compound NN cord-293304-kakxmc14 141 3 24 24 CD cord-293304-kakxmc14 141 4 , , , cord-293304-kakxmc14 141 5 the the DT cord-293304-kakxmc14 141 6 tail tail NN cord-293304-kakxmc14 141 7 of of IN cord-293304-kakxmc14 141 8 side side NN cord-293304-kakxmc14 141 9 chain chain NN cord-293304-kakxmc14 141 10 has have VBZ cord-293304-kakxmc14 141 11 become become VBN cord-293304-kakxmc14 141 12 a a DT cord-293304-kakxmc14 141 13 part part NN cord-293304-kakxmc14 141 14 of of IN cord-293304-kakxmc14 141 15 a a DT cord-293304-kakxmc14 141 16 ring ring NN cord-293304-kakxmc14 141 17 , , , cord-293304-kakxmc14 141 18 which which WDT cord-293304-kakxmc14 141 19 can can MD cord-293304-kakxmc14 141 20 interact interact VB cord-293304-kakxmc14 141 21 with with IN cord-293304-kakxmc14 141 22 Met165 met165 CD cord-293304-kakxmc14 141 23 residue residue NN cord-293304-kakxmc14 141 24 via via IN cord-293304-kakxmc14 141 25 π−alkyl π−alkyl ADD cord-293304-kakxmc14 141 26 interaction interaction NN cord-293304-kakxmc14 141 27 . . . cord-293304-kakxmc14 142 1 Because because IN cord-293304-kakxmc14 142 2 of of IN cord-293304-kakxmc14 142 3 the the DT cord-293304-kakxmc14 142 4 presence presence NN cord-293304-kakxmc14 142 5 of of IN cord-293304-kakxmc14 142 6 an an DT cord-293304-kakxmc14 142 7 additional additional JJ cord-293304-kakxmc14 142 8 −NH −nh CD cord-293304-kakxmc14 142 9 group group NN cord-293304-kakxmc14 142 10 , , , cord-293304-kakxmc14 142 11 the the DT cord-293304-kakxmc14 142 12 basicity basicity NN cord-293304-kakxmc14 142 13 of of IN cord-293304-kakxmc14 142 14 these these DT cord-293304-kakxmc14 142 15 compounds compound NNS cord-293304-kakxmc14 142 16 is be VBZ cord-293304-kakxmc14 142 17 higher high JJR cord-293304-kakxmc14 142 18 than than IN cord-293304-kakxmc14 142 19 CQ CQ NNP cord-293304-kakxmc14 142 20 and and CC cord-293304-kakxmc14 142 21 HCQ HCQ NNP cord-293304-kakxmc14 142 22 , , , cord-293304-kakxmc14 142 23 and and CC cord-293304-kakxmc14 142 24 thus thus RB cord-293304-kakxmc14 142 25 , , , cord-293304-kakxmc14 142 26 they -PRON- PRP cord-293304-kakxmc14 142 27 can can MD cord-293304-kakxmc14 142 28 act act VB cord-293304-kakxmc14 142 29 as as RB cord-293304-kakxmc14 142 30 better well JJR cord-293304-kakxmc14 142 31 inhibitors inhibitor NNS cord-293304-kakxmc14 142 32 against against IN cord-293304-kakxmc14 142 33 SARS SARS NNP cord-293304-kakxmc14 142 34 - - HYPH cord-293304-kakxmc14 142 35 CoV-2 CoV-2 NNP cord-293304-kakxmc14 142 36 . . . cord-293304-kakxmc14 143 1 Compounds compound NNS cord-293304-kakxmc14 143 2 29 29 CD cord-293304-kakxmc14 143 3 , , , cord-293304-kakxmc14 143 4 25 25 CD cord-293304-kakxmc14 143 5 22 22 CD cord-293304-kakxmc14 143 6 , , , cord-293304-kakxmc14 143 7 8 8 CD cord-293304-kakxmc14 143 8 , , , cord-293304-kakxmc14 143 9 24 24 CD cord-293304-kakxmc14 143 10 , , , cord-293304-kakxmc14 143 11 and and CC cord-293304-kakxmc14 143 12 1 1 CD cord-293304-kakxmc14 143 13 form form NN cord-293304-kakxmc14 143 14 π π CD cord-293304-kakxmc14 143 15 - - HYPH cord-293304-kakxmc14 143 16 donor donor NN cord-293304-kakxmc14 143 17 hydrogen hydrogen NN cord-293304-kakxmc14 143 18 bonds bond NNS cord-293304-kakxmc14 143 19 with with IN cord-293304-kakxmc14 143 20 Cys145 Cys145 NNP cord-293304-kakxmc14 143 21 , , , cord-293304-kakxmc14 143 22 which which WDT cord-293304-kakxmc14 143 23 will will MD cord-293304-kakxmc14 143 24 make make VB cord-293304-kakxmc14 143 25 the the DT cord-293304-kakxmc14 143 26 −SH −sh CD cord-293304-kakxmc14 143 27 hydrogen hydrogen NN cord-293304-kakxmc14 143 28 less less RBR cord-293304-kakxmc14 143 29 available available JJ cord-293304-kakxmc14 143 30 for for IN cord-293304-kakxmc14 143 31 catalytic catalytic JJ cord-293304-kakxmc14 143 32 cycle cycle NN cord-293304-kakxmc14 143 33 . . . cord-293304-kakxmc14 144 1 Compounds compound NNS cord-293304-kakxmc14 144 2 29 29 CD cord-293304-kakxmc14 144 3 , , , cord-293304-kakxmc14 144 4 25 25 CD cord-293304-kakxmc14 144 5 , , , cord-293304-kakxmc14 144 6 22 22 CD cord-293304-kakxmc14 144 7 , , , cord-293304-kakxmc14 144 8 24 24 CD cord-293304-kakxmc14 144 9 , , , cord-293304-kakxmc14 144 10 and and CC cord-293304-kakxmc14 144 11 1 1 CD cord-293304-kakxmc14 144 12 have have VBP cord-293304-kakxmc14 144 13 a a DT cord-293304-kakxmc14 144 14 π−alkyl π−alkyl ADD cord-293304-kakxmc14 144 15 interaction interaction NN cord-293304-kakxmc14 144 16 with with IN cord-293304-kakxmc14 144 17 Cys145 cys145 ADD cord-293304-kakxmc14 144 18 . . . cord-293304-kakxmc14 145 1 Overall overall RB cord-293304-kakxmc14 145 2 , , , cord-293304-kakxmc14 145 3 these these DT cord-293304-kakxmc14 145 4 interactions interaction NNS cord-293304-kakxmc14 145 5 may may MD cord-293304-kakxmc14 145 6 affect affect VB cord-293304-kakxmc14 145 7 the the DT cord-293304-kakxmc14 145 8 catalysis catalysis NN cord-293304-kakxmc14 145 9 of of IN cord-293304-kakxmc14 145 10 proteolysis proteolysis NN cord-293304-kakxmc14 145 11 reaction reaction NN cord-293304-kakxmc14 145 12 Journal Journal NNP cord-293304-kakxmc14 145 13 of of IN cord-293304-kakxmc14 145 14 Proteome Proteome NNP cord-293304-kakxmc14 145 15 Research Research NNP cord-293304-kakxmc14 145 16 pubs.acs.org/jpr pubs.acs.org/jpr NNP cord-293304-kakxmc14 145 17 Article article NN cord-293304-kakxmc14 145 18 and and CC cord-293304-kakxmc14 145 19 hence hence RB cord-293304-kakxmc14 145 20 block block VB cord-293304-kakxmc14 145 21 viral viral JJ cord-293304-kakxmc14 145 22 replication replication NN cord-293304-kakxmc14 145 23 . . . cord-293304-kakxmc14 146 1 Compound compound NN cord-293304-kakxmc14 146 2 29 29 CD cord-293304-kakxmc14 146 3 is be VBZ cord-293304-kakxmc14 146 4 primaquine primaquine NNP cord-293304-kakxmc14 146 5 ( ( -LRB- cord-293304-kakxmc14 146 6 an an DT cord-293304-kakxmc14 146 7 8-aminoquinoline 8-aminoquinoline CD cord-293304-kakxmc14 146 8 ) ) -RRB- cord-293304-kakxmc14 146 9 , , , cord-293304-kakxmc14 146 10 which which WDT cord-293304-kakxmc14 146 11 is be VBZ cord-293304-kakxmc14 146 12 an an DT cord-293304-kakxmc14 146 13 antimalarial antimalarial JJ cord-293304-kakxmc14 146 14 drug drug NN cord-293304-kakxmc14 146 15 . . . cord-293304-kakxmc14 147 1 49 49 CD cord-293304-kakxmc14 147 2 , , , cord-293304-kakxmc14 147 3 50 50 CD cord-293304-kakxmc14 148 1 The the DT cord-293304-kakxmc14 148 2 effect effect NN cord-293304-kakxmc14 148 3 of of IN cord-293304-kakxmc14 148 4 the the DT cord-293304-kakxmc14 148 5 side side NN cord-293304-kakxmc14 148 6 chain chain NN cord-293304-kakxmc14 148 7 in in IN cord-293304-kakxmc14 148 8 the the DT cord-293304-kakxmc14 148 9 chloroquinoline chloroquinoline NNP cord-293304-kakxmc14 148 10 scaffold scaffold NN cord-293304-kakxmc14 148 11 was be VBD cord-293304-kakxmc14 148 12 studied study VBN cord-293304-kakxmc14 148 13 by by IN cord-293304-kakxmc14 148 14 changing change VBG cord-293304-kakxmc14 148 15 the the DT cord-293304-kakxmc14 148 16 chain chain NN cord-293304-kakxmc14 148 17 length length NN cord-293304-kakxmc14 148 18 and and CC cord-293304-kakxmc14 148 19 methyl methyl NN cord-293304-kakxmc14 148 20 substitution substitution NN cord-293304-kakxmc14 148 21 of of IN cord-293304-kakxmc14 148 22 the the DT cord-293304-kakxmc14 148 23 side side NN cord-293304-kakxmc14 148 24 chain chain NN cord-293304-kakxmc14 148 25 . . . cord-293304-kakxmc14 149 1 Compounds compound NNS cord-293304-kakxmc14 149 2 12 12 CD cord-293304-kakxmc14 149 3 and and CC cord-293304-kakxmc14 149 4 23 23 CD cord-293304-kakxmc14 149 5 are be VBP cord-293304-kakxmc14 149 6 obtained obtain VBN cord-293304-kakxmc14 149 7 by by IN cord-293304-kakxmc14 149 8 the the DT cord-293304-kakxmc14 149 9 removal removal NN cord-293304-kakxmc14 149 10 of of IN cord-293304-kakxmc14 149 11 the the DT cord-293304-kakxmc14 149 12 branching branch VBG cord-293304-kakxmc14 149 13 methyl methyl NN cord-293304-kakxmc14 149 14 group group NN cord-293304-kakxmc14 149 15 from from IN cord-293304-kakxmc14 149 16 CQ CQ NNP cord-293304-kakxmc14 149 17 and and CC cord-293304-kakxmc14 149 18 HCQ HCQ NNP cord-293304-kakxmc14 149 19 structures structure NNS cord-293304-kakxmc14 149 20 , , , cord-293304-kakxmc14 149 21 which which WDT cord-293304-kakxmc14 149 22 results result VBZ cord-293304-kakxmc14 149 23 in in IN cord-293304-kakxmc14 149 24 an an DT cord-293304-kakxmc14 149 25 increase increase NN cord-293304-kakxmc14 149 26 in in IN cord-293304-kakxmc14 149 27 the the DT cord-293304-kakxmc14 149 28 binding bind VBG cord-293304-kakxmc14 149 29 energy energy NN cord-293304-kakxmc14 149 30 to to IN cord-293304-kakxmc14 149 31 −5.23 −5.23 NNP cord-293304-kakxmc14 149 32 and and CC cord-293304-kakxmc14 149 33 −5.80 −5.80 NNP cord-293304-kakxmc14 149 34 kcal kcal NNP cord-293304-kakxmc14 149 35 / / SYM cord-293304-kakxmc14 149 36 mol mol NN cord-293304-kakxmc14 149 37 , , , cord-293304-kakxmc14 149 38 respectively respectively RB cord-293304-kakxmc14 149 39 . . . cord-293304-kakxmc14 150 1 Therefore therefore RB cord-293304-kakxmc14 150 2 , , , cord-293304-kakxmc14 150 3 it -PRON- PRP cord-293304-kakxmc14 150 4 is be VBZ cord-293304-kakxmc14 150 5 understood understand VBN cord-293304-kakxmc14 150 6 that that IN cord-293304-kakxmc14 150 7 the the DT cord-293304-kakxmc14 150 8 branching branching NN cord-293304-kakxmc14 150 9 next next RB cord-293304-kakxmc14 150 10 to to IN cord-293304-kakxmc14 150 11 the the DT cord-293304-kakxmc14 150 12 −NH− −NH− NNP cord-293304-kakxmc14 150 13 group group NN cord-293304-kakxmc14 150 14 in in IN cord-293304-kakxmc14 150 15 4-aminopentyl 4-aminopentyl CD cord-293304-kakxmc14 150 16 side side NN cord-293304-kakxmc14 150 17 chain chain NN cord-293304-kakxmc14 150 18 is be VBZ cord-293304-kakxmc14 150 19 important important JJ cord-293304-kakxmc14 150 20 . . . cord-293304-kakxmc14 151 1 Isosteric isosteric JJ cord-293304-kakxmc14 151 2 substitution substitution NN cord-293304-kakxmc14 151 3 of of IN cord-293304-kakxmc14 151 4 −CH −ch CD cord-293304-kakxmc14 151 5 3 3 CD cord-293304-kakxmc14 151 6 group group NN cord-293304-kakxmc14 151 7 in in IN cord-293304-kakxmc14 151 8 compounds compound NNS cord-293304-kakxmc14 151 9 21 21 CD cord-293304-kakxmc14 151 10 , , , cord-293304-kakxmc14 151 11 22 22 CD cord-293304-kakxmc14 151 12 , , , cord-293304-kakxmc14 151 13 and and CC cord-293304-kakxmc14 151 14 26 26 CD cord-293304-kakxmc14 151 15 with with IN cord-293304-kakxmc14 151 16 −OH −oh ADD cord-293304-kakxmc14 151 17 , , , cord-293304-kakxmc14 151 18 −NH −NH NNP cord-293304-kakxmc14 151 19 2 2 CD cord-293304-kakxmc14 151 20 , , , cord-293304-kakxmc14 151 21 and and CC cord-293304-kakxmc14 151 22 −CF −CF NFP cord-293304-kakxmc14 151 23 3 3 CD cord-293304-kakxmc14 151 24 results result NNS cord-293304-kakxmc14 151 25 in in IN cord-293304-kakxmc14 151 26 binding bind VBG cord-293304-kakxmc14 151 27 energies energy NNS cord-293304-kakxmc14 152 1 −5.75 −5.75 NNP cord-293304-kakxmc14 152 2 , , , cord-293304-kakxmc14 152 3 −7.21 −7.21 NNP cord-293304-kakxmc14 152 4 , , , cord-293304-kakxmc14 152 5 and and CC cord-293304-kakxmc14 152 6 −5.25 −5.25 NNP cord-293304-kakxmc14 152 7 kcal kcal NNP cord-293304-kakxmc14 152 8 / / SYM cord-293304-kakxmc14 152 9 mol mol NN cord-293304-kakxmc14 152 10 , , , cord-293304-kakxmc14 152 11 respectively respectively RB cord-293304-kakxmc14 152 12 . . . cord-293304-kakxmc14 153 1 Substitution substitution NN cord-293304-kakxmc14 153 2 with with IN cord-293304-kakxmc14 153 3 NH NH NNP cord-293304-kakxmc14 153 4 2 2 CD cord-293304-kakxmc14 153 5 resulted result VBD cord-293304-kakxmc14 153 6 in in IN cord-293304-kakxmc14 153 7 a a DT cord-293304-kakxmc14 153 8 decrease decrease NN cord-293304-kakxmc14 153 9 in in IN cord-293304-kakxmc14 153 10 binding bind VBG cord-293304-kakxmc14 153 11 energy energy NN cord-293304-kakxmc14 153 12 compared compare VBN cord-293304-kakxmc14 153 13 to to IN cord-293304-kakxmc14 153 14 HCQ HCQ NNP cord-293304-kakxmc14 153 15 by by IN cord-293304-kakxmc14 153 16 a a DT cord-293304-kakxmc14 153 17 factor factor NN cord-293304-kakxmc14 153 18 of of IN cord-293304-kakxmc14 153 19 −0.63 −0.63 NNP cord-293304-kakxmc14 153 20 kcal kcal NNP cord-293304-kakxmc14 153 21 / / SYM cord-293304-kakxmc14 153 22 mol mol NNP cord-293304-kakxmc14 153 23 , , , cord-293304-kakxmc14 153 24 which which WDT cord-293304-kakxmc14 153 25 means mean VBZ cord-293304-kakxmc14 153 26 that that IN cord-293304-kakxmc14 153 27 an an DT cord-293304-kakxmc14 153 28 extra extra JJ cord-293304-kakxmc14 153 29 0.63 0.63 CD cord-293304-kakxmc14 153 30 kcal kcal NNP cord-293304-kakxmc14 153 31 / / SYM cord-293304-kakxmc14 153 32 mol mol NN cord-293304-kakxmc14 153 33 of of IN cord-293304-kakxmc14 153 34 energy energy NN cord-293304-kakxmc14 153 35 is be VBZ cord-293304-kakxmc14 153 36 released release VBN cord-293304-kakxmc14 153 37 while while IN cord-293304-kakxmc14 153 38 forming form VBG cord-293304-kakxmc14 153 39 a a DT cord-293304-kakxmc14 153 40 docked dock VBN cord-293304-kakxmc14 153 41 complex complex NN cord-293304-kakxmc14 153 42 , , , cord-293304-kakxmc14 153 43 which which WDT cord-293304-kakxmc14 153 44 is be VBZ cord-293304-kakxmc14 153 45 more more RBR cord-293304-kakxmc14 153 46 stable stable JJ cord-293304-kakxmc14 153 47 than than IN cord-293304-kakxmc14 153 48 that that DT cord-293304-kakxmc14 153 49 of of IN cord-293304-kakxmc14 153 50 HCQ HCQ NNP cord-293304-kakxmc14 153 51 . . . cord-293304-kakxmc14 154 1 An an DT cord-293304-kakxmc14 154 2 increase increase NN cord-293304-kakxmc14 154 3 in in IN cord-293304-kakxmc14 154 4 binding bind VBG cord-293304-kakxmc14 154 5 energy energy NN cord-293304-kakxmc14 154 6 due due IN cord-293304-kakxmc14 154 7 to to IN cord-293304-kakxmc14 154 8 the the DT cord-293304-kakxmc14 154 9 variation variation NN cord-293304-kakxmc14 154 10 of of IN cord-293304-kakxmc14 154 11 side side NN cord-293304-kakxmc14 154 12 chain chain NN cord-293304-kakxmc14 154 13 length length NN cord-293304-kakxmc14 154 14 in in IN cord-293304-kakxmc14 154 15 CQ CQ NNP cord-293304-kakxmc14 154 16 and and CC cord-293304-kakxmc14 154 17 HCQ HCQ NNP cord-293304-kakxmc14 154 18 structures structure NNS cord-293304-kakxmc14 154 19 of of IN cord-293304-kakxmc14 154 20 compounds compound NNS cord-293304-kakxmc14 154 21 6 6 CD cord-293304-kakxmc14 154 22 , , , cord-293304-kakxmc14 154 23 9 9 CD cord-293304-kakxmc14 154 24 , , , cord-293304-kakxmc14 154 25 11 11 CD cord-293304-kakxmc14 154 26 , , , cord-293304-kakxmc14 154 27 14 14 CD cord-293304-kakxmc14 154 28 , , , cord-293304-kakxmc14 154 29 15 15 CD cord-293304-kakxmc14 154 30 , , , cord-293304-kakxmc14 154 31 16 16 CD cord-293304-kakxmc14 154 32 , , , cord-293304-kakxmc14 154 33 17 17 CD cord-293304-kakxmc14 154 34 , , , cord-293304-kakxmc14 154 35 18 18 CD cord-293304-kakxmc14 154 36 , , , cord-293304-kakxmc14 154 37 and and CC cord-293304-kakxmc14 154 38 19 19 CD cord-293304-kakxmc14 154 39 makes make VBZ cord-293304-kakxmc14 154 40 them -PRON- PRP cord-293304-kakxmc14 154 41 less less RBR cord-293304-kakxmc14 154 42 stable stable JJ cord-293304-kakxmc14 154 43 complexes complex NNS cord-293304-kakxmc14 154 44 with with IN cord-293304-kakxmc14 154 45 the the DT cord-293304-kakxmc14 154 46 protein protein NN cord-293304-kakxmc14 154 47 than than IN cord-293304-kakxmc14 154 48 with with IN cord-293304-kakxmc14 154 49 CQ CQ NNP cord-293304-kakxmc14 154 50 and and CC cord-293304-kakxmc14 154 51 HCQ HCQ NNP cord-293304-kakxmc14 154 52 . . . cord-293304-kakxmc14 155 1 Therefore therefore RB cord-293304-kakxmc14 155 2 , , , cord-293304-kakxmc14 155 3 the the DT cord-293304-kakxmc14 155 4 chain chain NN cord-293304-kakxmc14 155 5 length length NN cord-293304-kakxmc14 155 6 of of IN cord-293304-kakxmc14 155 7 4-aminopentyl 4-aminopentyl CD cord-293304-kakxmc14 155 8 group group NN cord-293304-kakxmc14 155 9 is be VBZ cord-293304-kakxmc14 155 10 optimal optimal JJ cord-293304-kakxmc14 155 11 for for IN cord-293304-kakxmc14 155 12 showing show VBG cord-293304-kakxmc14 155 13 biological biological JJ cord-293304-kakxmc14 155 14 activity activity NN cord-293304-kakxmc14 155 15 . . . cord-293304-kakxmc14 156 1 When when WRB cord-293304-kakxmc14 156 2 an an DT cord-293304-kakxmc14 156 3 additional additional JJ cord-293304-kakxmc14 156 4 −OH −oh CD cord-293304-kakxmc14 156 5 group group NN cord-293304-kakxmc14 156 6 is be VBZ cord-293304-kakxmc14 156 7 added add VBN cord-293304-kakxmc14 156 8 to to IN cord-293304-kakxmc14 156 9 the the DT cord-293304-kakxmc14 156 10 ethyl ethyl NN cord-293304-kakxmc14 156 11 chain chain NN cord-293304-kakxmc14 156 12 of of IN cord-293304-kakxmc14 156 13 HCQ HCQ NNP cord-293304-kakxmc14 156 14 resulting result VBG cord-293304-kakxmc14 156 15 in in IN cord-293304-kakxmc14 156 16 2-[(4aminopentyl)(2-hydroxyethyl)amino]ethan-1-ol 2-[(4aminopentyl)(2-hydroxyethyl)amino]ethan-1-ol CD cord-293304-kakxmc14 156 17 side side NN cord-293304-kakxmc14 156 18 chain chain NN cord-293304-kakxmc14 156 19 as as IN cord-293304-kakxmc14 156 20 in in IN cord-293304-kakxmc14 156 21 compound compound NN cord-293304-kakxmc14 156 22 13 13 CD cord-293304-kakxmc14 156 23 , , , cord-293304-kakxmc14 156 24 as as IN cord-293304-kakxmc14 156 25 a a DT cord-293304-kakxmc14 156 26 result result NN cord-293304-kakxmc14 156 27 , , , cord-293304-kakxmc14 156 28 the the DT cord-293304-kakxmc14 156 29 binding bind VBG cord-293304-kakxmc14 156 30 energy energy NN cord-293304-kakxmc14 156 31 is be VBZ cord-293304-kakxmc14 156 32 decreased decrease VBN cord-293304-kakxmc14 156 33 to to IN cord-293304-kakxmc14 156 34 −6.0 −6.0 CD cord-293304-kakxmc14 156 35 kcal kcal NNP cord-293304-kakxmc14 156 36 / / SYM cord-293304-kakxmc14 156 37 mol mol NN cord-293304-kakxmc14 156 38 . . . cord-293304-kakxmc14 157 1 Therefore therefore RB cord-293304-kakxmc14 157 2 , , , cord-293304-kakxmc14 157 3 the the DT cord-293304-kakxmc14 157 4 −OH −oh CD cord-293304-kakxmc14 157 5 group group NN cord-293304-kakxmc14 157 6 at at IN cord-293304-kakxmc14 157 7 one one CD cord-293304-kakxmc14 157 8 terminal terminal JJ cord-293304-kakxmc14 157 9 ethyl ethyl NN cord-293304-kakxmc14 157 10 chain chain NN cord-293304-kakxmc14 157 11 only only RB cord-293304-kakxmc14 157 12 is be VBZ cord-293304-kakxmc14 157 13 required require VBN cord-293304-kakxmc14 157 14 for for IN cord-293304-kakxmc14 157 15 their -PRON- PRP$ cord-293304-kakxmc14 157 16 inhibitory inhibitory JJ cord-293304-kakxmc14 157 17 activity activity NN cord-293304-kakxmc14 157 18 . . . cord-293304-kakxmc14 158 1 Rearrangement rearrangement NN cord-293304-kakxmc14 158 2 of of IN cord-293304-kakxmc14 158 3 the the DT cord-293304-kakxmc14 158 4 amino amino NN cord-293304-kakxmc14 158 5 side side NN cord-293304-kakxmc14 158 6 chain chain NN cord-293304-kakxmc14 158 7 from from IN cord-293304-kakxmc14 158 8 the the DT cord-293304-kakxmc14 158 9 fourth fourth JJ cord-293304-kakxmc14 158 10 position position NN cord-293304-kakxmc14 158 11 to to IN cord-293304-kakxmc14 158 12 fifth fifth JJ cord-293304-kakxmc14 158 13 position position NN cord-293304-kakxmc14 158 14 of of IN cord-293304-kakxmc14 158 15 quinoline quinoline JJ cord-293304-kakxmc14 158 16 ring ring NN cord-293304-kakxmc14 158 17 in in IN cord-293304-kakxmc14 158 18 HCQ HCQ NNP cord-293304-kakxmc14 158 19 ( ( -LRB- cord-293304-kakxmc14 158 20 molecule molecule NN cord-293304-kakxmc14 158 21 33 33 CD cord-293304-kakxmc14 158 22 ) ) -RRB- cord-293304-kakxmc14 158 23 increased increase VBD cord-293304-kakxmc14 158 24 the the DT cord-293304-kakxmc14 158 25 binding bind VBG cord-293304-kakxmc14 158 26 energy energy NN cord-293304-kakxmc14 158 27 by by IN cord-293304-kakxmc14 158 28 0.53 0.53 CD cord-293304-kakxmc14 158 29 kcal kcal NNP cord-293304-kakxmc14 158 30 / / SYM cord-293304-kakxmc14 158 31 mol mol NN cord-293304-kakxmc14 158 32 . . . cord-293304-kakxmc14 159 1 Replacement replacement NN cord-293304-kakxmc14 159 2 of of IN cord-293304-kakxmc14 159 3 quinoline quinoline JJ cord-293304-kakxmc14 159 4 scaffold scaffold NN cord-293304-kakxmc14 159 5 by by IN cord-293304-kakxmc14 159 6 isoquinoline isoquinoline NNP cord-293304-kakxmc14 159 7 scaffold scaffold NN cord-293304-kakxmc14 159 8 also also RB cord-293304-kakxmc14 159 9 increased increase VBD cord-293304-kakxmc14 159 10 the the DT cord-293304-kakxmc14 159 11 binding bind VBG cord-293304-kakxmc14 159 12 energy energy NN cord-293304-kakxmc14 159 13 by by IN cord-293304-kakxmc14 159 14 an an DT cord-293304-kakxmc14 159 15 amount amount NN cord-293304-kakxmc14 159 16 of of IN cord-293304-kakxmc14 159 17 0.61 0.61 CD cord-293304-kakxmc14 159 18 kcal/ kcal/ NNS cord-293304-kakxmc14 159 19 mol mol NN cord-293304-kakxmc14 159 20 . . . cord-293304-kakxmc14 160 1 The the DT cord-293304-kakxmc14 160 2 CQ CQ NNP cord-293304-kakxmc14 160 3 , , , cord-293304-kakxmc14 160 4 HCQ HCQ NNP cord-293304-kakxmc14 160 5 , , , cord-293304-kakxmc14 160 6 and and CC cord-293304-kakxmc14 160 7 its -PRON- PRP$ cord-293304-kakxmc14 160 8 33 33 CD cord-293304-kakxmc14 160 9 analogs analog NNS cord-293304-kakxmc14 160 10 taken take VBN cord-293304-kakxmc14 160 11 for for IN cord-293304-kakxmc14 160 12 this this DT cord-293304-kakxmc14 160 13 study study NN cord-293304-kakxmc14 160 14 were be VBD cord-293304-kakxmc14 160 15 subjected subject VBN cord-293304-kakxmc14 160 16 to to IN cord-293304-kakxmc14 160 17 MLR MLR NNP cord-293304-kakxmc14 160 18 analysis analysis NN cord-293304-kakxmc14 160 19 . . . cord-293304-kakxmc14 161 1 Regression regression NN cord-293304-kakxmc14 161 2 models model NNS cord-293304-kakxmc14 161 3 were be VBD cord-293304-kakxmc14 161 4 generated generate VBN cord-293304-kakxmc14 161 5 with with IN cord-293304-kakxmc14 161 6 binding bind VBG cord-293304-kakxmc14 161 7 energy energy NN cord-293304-kakxmc14 161 8 as as IN cord-293304-kakxmc14 161 9 the the DT cord-293304-kakxmc14 161 10 response response NN cord-293304-kakxmc14 161 11 and and CC cord-293304-kakxmc14 161 12 molecular molecular JJ cord-293304-kakxmc14 161 13 descriptors descriptor NNS cord-293304-kakxmc14 161 14 as as IN cord-293304-kakxmc14 161 15 the the DT cord-293304-kakxmc14 161 16 variables variable NNS cord-293304-kakxmc14 161 17 . . . cord-293304-kakxmc14 162 1 Many many JJ cord-293304-kakxmc14 162 2 models model NNS cord-293304-kakxmc14 162 3 were be VBD cord-293304-kakxmc14 162 4 generated generate VBN cord-293304-kakxmc14 162 5 by by IN cord-293304-kakxmc14 162 6 varying vary VBG cord-293304-kakxmc14 162 7 1−5 1−5 CD cord-293304-kakxmc14 162 8 variables variable NNS cord-293304-kakxmc14 162 9 at at IN cord-293304-kakxmc14 162 10 a a DT cord-293304-kakxmc14 162 11 time time NN cord-293304-kakxmc14 162 12 from from IN cord-293304-kakxmc14 162 13 a a DT cord-293304-kakxmc14 162 14 set set NN cord-293304-kakxmc14 162 15 of of IN cord-293304-kakxmc14 162 16 1602 1602 CD cord-293304-kakxmc14 162 17 descriptors descriptor NNS cord-293304-kakxmc14 162 18 . . . cord-293304-kakxmc14 163 1 The the DT cord-293304-kakxmc14 163 2 fitness fitness NN cord-293304-kakxmc14 163 3 criteria criterion NNS cord-293304-kakxmc14 163 4 of of IN cord-293304-kakxmc14 163 5 a a DT cord-293304-kakxmc14 163 6 model model NN cord-293304-kakxmc14 163 7 include include VBP cord-293304-kakxmc14 163 8 R r NN cord-293304-kakxmc14 163 9 2 2 CD cord-293304-kakxmc14 163 10 ≥ ≥ CD cord-293304-kakxmc14 163 11 0.6 0.6 CD cord-293304-kakxmc14 163 12 , , , cord-293304-kakxmc14 163 13 R r NN cord-293304-kakxmc14 163 14 2 2 CD cord-293304-kakxmc14 163 15 adj adj JJ cord-293304-kakxmc14 163 16 ≥ ≥ NNP cord-293304-kakxmc14 163 17 0.6 0.6 CD cord-293304-kakxmc14 163 18 , , , cord-293304-kakxmc14 163 19 Q q NN cord-293304-kakxmc14 163 20 2 2 CD cord-293304-kakxmc14 163 21 loo loo NNP cord-293304-kakxmc14 163 22 ≥ ≥ CD cord-293304-kakxmc14 163 23 0.6 0.6 CD cord-293304-kakxmc14 163 24 , , , cord-293304-kakxmc14 163 25 high high JJ cord-293304-kakxmc14 163 26 value value NN cord-293304-kakxmc14 163 27 for for IN cord-293304-kakxmc14 163 28 Fisher Fisher NNP cord-293304-kakxmc14 163 29 ratio ratio NN cord-293304-kakxmc14 163 30 ( ( -LRB- cord-293304-kakxmc14 163 31 F F NNP cord-293304-kakxmc14 163 32 ) ) -RRB- cord-293304-kakxmc14 163 33 , , , cord-293304-kakxmc14 163 34 low low JJ cord-293304-kakxmc14 163 35 regression regression NN cord-293304-kakxmc14 163 36 standard standard NN cord-293304-kakxmc14 163 37 deviation deviation NN cord-293304-kakxmc14 163 38 ( ( -LRB- cord-293304-kakxmc14 163 39 s s NN cord-293304-kakxmc14 163 40 ) ) -RRB- cord-293304-kakxmc14 163 41 , , , cord-293304-kakxmc14 163 42 lower low JJR cord-293304-kakxmc14 163 43 correlation correlation NN cord-293304-kakxmc14 163 44 between between IN cord-293304-kakxmc14 163 45 descriptors descriptor NNS cord-293304-kakxmc14 163 46 ( ( -LRB- cord-293304-kakxmc14 163 47 K K NNP cord-293304-kakxmc14 163 48 xx xx CD cord-293304-kakxmc14 163 49 ) ) -RRB- cord-293304-kakxmc14 163 50 , , , cord-293304-kakxmc14 163 51 positive positive JJ cord-293304-kakxmc14 163 52 value value NN cord-293304-kakxmc14 163 53 for for IN cord-293304-kakxmc14 163 54 δ δ NNP cord-293304-kakxmc14 163 55 k k NNP cord-293304-kakxmc14 163 56 , , , cord-293304-kakxmc14 163 57 which which WDT cord-293304-kakxmc14 163 58 is be VBZ cord-293304-kakxmc14 163 59 the the DT cord-293304-kakxmc14 163 60 difference difference NN cord-293304-kakxmc14 163 61 in in IN cord-293304-kakxmc14 163 62 correlation correlation NN cord-293304-kakxmc14 163 63 between between IN cord-293304-kakxmc14 163 64 descriptors descriptor NNS cord-293304-kakxmc14 163 65 and and CC cord-293304-kakxmc14 163 66 the the DT cord-293304-kakxmc14 163 67 response response NN cord-293304-kakxmc14 163 68 ( ( -LRB- cord-293304-kakxmc14 163 69 y y NN cord-293304-kakxmc14 163 70 ) ) -RRB- cord-293304-kakxmc14 163 71 value value NN cord-293304-kakxmc14 163 72 and and CC cord-293304-kakxmc14 163 73 correlation correlation NN cord-293304-kakxmc14 163 74 among among IN cord-293304-kakxmc14 163 75 descriptors descriptor NNS cord-293304-kakxmc14 163 76 , , , cord-293304-kakxmc14 163 77 and and CC cord-293304-kakxmc14 163 78 smaller small JJR cord-293304-kakxmc14 163 79 root−mean−squared root−mean−squared JJ cord-293304-kakxmc14 163 80 error error NN cord-293304-kakxmc14 163 81 for for IN cord-293304-kakxmc14 163 82 training training NN cord-293304-kakxmc14 163 83 calculation calculation NN cord-293304-kakxmc14 163 84 ( ( -LRB- cord-293304-kakxmc14 163 85 RMSE RMSE NNP cord-293304-kakxmc14 163 86 tr tr NN cord-293304-kakxmc14 163 87 ) ) -RRB- cord-293304-kakxmc14 163 88 . . . cord-293304-kakxmc14 164 1 51 51 CD cord-293304-kakxmc14 164 2 , , , cord-293304-kakxmc14 164 3 52 52 CD cord-293304-kakxmc14 165 1 The the DT cord-293304-kakxmc14 165 2 parameters parameter NNS cord-293304-kakxmc14 165 3 of of IN cord-293304-kakxmc14 165 4 the the DT cord-293304-kakxmc14 165 5 best good JJS cord-293304-kakxmc14 165 6 five five CD cord-293304-kakxmc14 165 7 models model NNS cord-293304-kakxmc14 165 8 calculated calculate VBN cord-293304-kakxmc14 165 9 are be VBP cord-293304-kakxmc14 165 10 given give VBN cord-293304-kakxmc14 165 11 in in IN cord-293304-kakxmc14 165 12 Table Table NNP cord-293304-kakxmc14 165 13 3 3 CD cord-293304-kakxmc14 165 14 . . . cord-293304-kakxmc14 166 1 Considering consider VBG cord-293304-kakxmc14 166 2 all all PDT cord-293304-kakxmc14 166 3 the the DT cord-293304-kakxmc14 166 4 models model NNS cord-293304-kakxmc14 166 5 generated generate VBN cord-293304-kakxmc14 166 6 , , , cord-293304-kakxmc14 166 7 model model NN cord-293304-kakxmc14 166 8 1 1 CD cord-293304-kakxmc14 166 9 has have VBZ cord-293304-kakxmc14 166 10 the the DT cord-293304-kakxmc14 166 11 highest high JJS cord-293304-kakxmc14 166 12 fitness fitness NN cord-293304-kakxmc14 166 13 score score NN cord-293304-kakxmc14 166 14 . . . cord-293304-kakxmc14 167 1 However however RB cord-293304-kakxmc14 167 2 , , , cord-293304-kakxmc14 167 3 upon upon IN cord-293304-kakxmc14 167 4 inspecting inspect VBG cord-293304-kakxmc14 167 5 its -PRON- PRP$ cord-293304-kakxmc14 167 6 external external JJ cord-293304-kakxmc14 167 7 validation validation NN cord-293304-kakxmc14 167 8 parameters parameter NNS cord-293304-kakxmc14 167 9 RMSE RMSE NNP cord-293304-kakxmc14 167 10 ext ext NN cord-293304-kakxmc14 167 11 = = SYM cord-293304-kakxmc14 167 12 0.9003 0.9003 CD cord-293304-kakxmc14 167 13 and and CC cord-293304-kakxmc14 167 14 R R NNP cord-293304-kakxmc14 167 15 2 2 CD cord-293304-kakxmc14 167 16 ext ext NN cord-293304-kakxmc14 167 17 = = SYM cord-293304-kakxmc14 167 18 0.3245 0.3245 CD cord-293304-kakxmc14 167 19 , , , cord-293304-kakxmc14 167 20 the the DT cord-293304-kakxmc14 167 21 values value NNS cord-293304-kakxmc14 167 22 did do VBD cord-293304-kakxmc14 167 23 not not RB cord-293304-kakxmc14 167 24 meet meet VB cord-293304-kakxmc14 167 25 the the DT cord-293304-kakxmc14 167 26 cutoff cutoff NN cord-293304-kakxmc14 167 27 and and CC cord-293304-kakxmc14 167 28 hence hence RB cord-293304-kakxmc14 167 29 show show VB cord-293304-kakxmc14 167 30 poor poor JJ cord-293304-kakxmc14 167 31 predictability predictability NN cord-293304-kakxmc14 167 32 . . . cord-293304-kakxmc14 168 1 For for IN cord-293304-kakxmc14 168 2 a a DT cord-293304-kakxmc14 168 3 good good JJ cord-293304-kakxmc14 168 4 prediction prediction NN cord-293304-kakxmc14 168 5 , , , cord-293304-kakxmc14 168 6 RMSE RMSE NNP cord-293304-kakxmc14 168 7 ext ext NN cord-293304-kakxmc14 168 8 should should MD cord-293304-kakxmc14 168 9 not not RB cord-293304-kakxmc14 168 10 vary vary VB cord-293304-kakxmc14 168 11 much much RB cord-293304-kakxmc14 168 12 from from IN cord-293304-kakxmc14 168 13 RMSE RMSE NNP cord-293304-kakxmc14 168 14 tr tr NN cord-293304-kakxmc14 168 15 ( ( -LRB- cord-293304-kakxmc14 168 16 difference difference NN cord-293304-kakxmc14 168 17 should should MD cord-293304-kakxmc14 168 18 be be VB cord-293304-kakxmc14 168 19 less less JJR cord-293304-kakxmc14 168 20 ) ) -RRB- cord-293304-kakxmc14 168 21 and and CC cord-293304-kakxmc14 168 22 R R NNP cord-293304-kakxmc14 168 23 2 2 CD cord-293304-kakxmc14 168 24 ext ext NN cord-293304-kakxmc14 168 25 should should MD cord-293304-kakxmc14 168 26 be be VB cord-293304-kakxmc14 168 27 greater great JJR cord-293304-kakxmc14 168 28 than than IN cord-293304-kakxmc14 168 29 0.6 0.6 CD cord-293304-kakxmc14 168 30 . . . cord-293304-kakxmc14 169 1 Model model NN cord-293304-kakxmc14 169 2 2 2 CD cord-293304-kakxmc14 169 3 was be VBD cord-293304-kakxmc14 169 4 selected select VBN cord-293304-kakxmc14 169 5 for for IN cord-293304-kakxmc14 169 6 further further JJ cord-293304-kakxmc14 169 7 studies study NNS cord-293304-kakxmc14 169 8 since since IN cord-293304-kakxmc14 169 9 it -PRON- PRP cord-293304-kakxmc14 169 10 was be VBD cord-293304-kakxmc14 169 11 the the DT cord-293304-kakxmc14 169 12 best good JJS cord-293304-kakxmc14 169 13 fit fit JJ cord-293304-kakxmc14 169 14 model model NN cord-293304-kakxmc14 169 15 with with IN cord-293304-kakxmc14 169 16 next next RB cord-293304-kakxmc14 169 17 highest high JJS cord-293304-kakxmc14 169 18 R r NN cord-293304-kakxmc14 169 19 2 2 CD cord-293304-kakxmc14 169 20 and and CC cord-293304-kakxmc14 169 21 Q Q NNP cord-293304-kakxmc14 169 22 2 2 CD cord-293304-kakxmc14 169 23 loo loo NN cord-293304-kakxmc14 169 24 , , , cord-293304-kakxmc14 169 25 which which WDT cord-293304-kakxmc14 169 26 represents represent VBZ cord-293304-kakxmc14 169 27 the the DT cord-293304-kakxmc14 169 28 fitness fitness NN cord-293304-kakxmc14 169 29 , , , cord-293304-kakxmc14 169 30 robustness robustness NN cord-293304-kakxmc14 169 31 of of IN cord-293304-kakxmc14 169 32 the the DT cord-293304-kakxmc14 169 33 model model NN cord-293304-kakxmc14 169 34 , , , cord-293304-kakxmc14 169 35 and and CC cord-293304-kakxmc14 169 36 the the DT cord-293304-kakxmc14 169 37 proximity proximity NN cord-293304-kakxmc14 169 38 of of IN cord-293304-kakxmc14 169 39 actual actual JJ cord-293304-kakxmc14 169 40 and and CC cord-293304-kakxmc14 169 41 predicted predict VBD cord-293304-kakxmc14 169 42 binding bind VBG cord-293304-kakxmc14 169 43 energy energy NN cord-293304-kakxmc14 169 44 values value NNS cord-293304-kakxmc14 169 45 . . . cord-293304-kakxmc14 170 1 The the DT cord-293304-kakxmc14 170 2 model model NN cord-293304-kakxmc14 170 3 was be VBD cord-293304-kakxmc14 170 4 built build VBN cord-293304-kakxmc14 170 5 by by IN cord-293304-kakxmc14 170 6 incorporating incorporate VBG cord-293304-kakxmc14 170 7 the the DT cord-293304-kakxmc14 170 8 compounds compound NNS cord-293304-kakxmc14 170 9 2 2 CD cord-293304-kakxmc14 170 10 , , , cord-293304-kakxmc14 170 11 5 5 CD cord-293304-kakxmc14 170 12 , , , cord-293304-kakxmc14 170 13 11 11 CD cord-293304-kakxmc14 170 14 , , , cord-293304-kakxmc14 170 15 21 21 CD cord-293304-kakxmc14 170 16 , , , cord-293304-kakxmc14 170 17 26 26 CD cord-293304-kakxmc14 170 18 , , , cord-293304-kakxmc14 170 19 28 28 CD cord-293304-kakxmc14 170 20 , , , cord-293304-kakxmc14 170 21 and and CC cord-293304-kakxmc14 170 22 30 30 CD cord-293304-kakxmc14 170 23 in in IN cord-293304-kakxmc14 170 24 the the DT cord-293304-kakxmc14 170 25 test test NN cord-293304-kakxmc14 170 26 set set VBN cord-293304-kakxmc14 170 27 and and CC cord-293304-kakxmc14 170 28 all all DT cord-293304-kakxmc14 170 29 others other NNS cord-293304-kakxmc14 170 30 in in IN cord-293304-kakxmc14 170 31 the the DT cord-293304-kakxmc14 170 32 training training NN cord-293304-kakxmc14 170 33 set set NN cord-293304-kakxmc14 170 34 . . . cord-293304-kakxmc14 171 1 Thus thus RB cord-293304-kakxmc14 171 2 , , , cord-293304-kakxmc14 171 3 the the DT cord-293304-kakxmc14 171 4 binding bind VBG cord-293304-kakxmc14 171 5 energy energy NN cord-293304-kakxmc14 171 6 , , , cord-293304-kakxmc14 171 7 the the DT cord-293304-kakxmc14 171 8 response response NN cord-293304-kakxmc14 171 9 value value NN cord-293304-kakxmc14 171 10 ( ( -LRB- cord-293304-kakxmc14 171 11 y y NNP cord-293304-kakxmc14 171 12 ) ) -RRB- cord-293304-kakxmc14 171 13 , , , cord-293304-kakxmc14 171 14 can can MD cord-293304-kakxmc14 171 15 be be VB cord-293304-kakxmc14 171 16 expressed express VBN cord-293304-kakxmc14 171 17 in in IN cord-293304-kakxmc14 171 18 terms term NNS cord-293304-kakxmc14 171 19 of of IN cord-293304-kakxmc14 171 20 the the DT cord-293304-kakxmc14 171 21 descriptors descriptor NNS cord-293304-kakxmc14 171 22 considered consider VBN cord-293304-kakxmc14 171 23 for for IN cord-293304-kakxmc14 171 24 the the DT cord-293304-kakxmc14 171 25 generation generation NN cord-293304-kakxmc14 171 26 of of IN cord-293304-kakxmc14 171 27 model model NN cord-293304-kakxmc14 171 28 2 2 CD cord-293304-kakxmc14 171 29 in in IN cord-293304-kakxmc14 171 30 the the DT cord-293304-kakxmc14 171 31 form form NN cord-293304-kakxmc14 171 32 of of IN cord-293304-kakxmc14 171 33 a a DT cord-293304-kakxmc14 171 34 linear linear JJ cord-293304-kakxmc14 171 35 relationship relationship NN cord-293304-kakxmc14 171 36 y y NNP cord-293304-kakxmc14 171 37 = = NN cord-293304-kakxmc14 172 1 Σm Σm NNS cord-293304-kakxmc14 173 1 i i PRP cord-293304-kakxmc14 174 1 x x LS cord-293304-kakxmc14 175 1 i i PRP cord-293304-kakxmc14 175 2 + + CC cord-293304-kakxmc14 176 1 c c LS cord-293304-kakxmc14 176 2 where where WRB cord-293304-kakxmc14 176 3 m m NNP cord-293304-kakxmc14 176 4 i i PRP cord-293304-kakxmc14 176 5 is be VBZ cord-293304-kakxmc14 176 6 the the DT cord-293304-kakxmc14 176 7 coefficient coefficient NN cord-293304-kakxmc14 176 8 obtained obtain VBN cord-293304-kakxmc14 176 9 for for IN cord-293304-kakxmc14 176 10 each each DT cord-293304-kakxmc14 176 11 descriptor descriptor NN cord-293304-kakxmc14 176 12 in in IN cord-293304-kakxmc14 176 13 MLR MLR NNP cord-293304-kakxmc14 176 14 model model NN cord-293304-kakxmc14 177 1 and and CC cord-293304-kakxmc14 177 2 x x LS cord-293304-kakxmc14 177 3 i i PRP cord-293304-kakxmc14 177 4 is be VBZ cord-293304-kakxmc14 177 5 the the DT cord-293304-kakxmc14 177 6 value value NN cord-293304-kakxmc14 177 7 for for IN cord-293304-kakxmc14 177 8 the the DT cord-293304-kakxmc14 177 9 selected select VBN cord-293304-kakxmc14 177 10 descriptor descriptor NN cord-293304-kakxmc14 177 11 . . . cord-293304-kakxmc14 178 1 The the DT cord-293304-kakxmc14 178 2 internal internal JJ cord-293304-kakxmc14 178 3 and and CC cord-293304-kakxmc14 178 4 external external JJ cord-293304-kakxmc14 178 5 validation validation NN cord-293304-kakxmc14 178 6 parameters parameter NNS cord-293304-kakxmc14 178 7 determine determine VBP cord-293304-kakxmc14 178 8 the the DT cord-293304-kakxmc14 178 9 feasibility feasibility NN cord-293304-kakxmc14 178 10 and and CC cord-293304-kakxmc14 178 11 predictivity predictivity NN cord-293304-kakxmc14 178 12 of of IN cord-293304-kakxmc14 178 13 the the DT cord-293304-kakxmc14 178 14 model model NN cord-293304-kakxmc14 178 15 29 29 CD cord-293304-kakxmc14 178 16 , , , cord-293304-kakxmc14 178 17 32 32 CD cord-293304-kakxmc14 178 18 ( ( -LRB- cord-293304-kakxmc14 178 19 Table Table NNP cord-293304-kakxmc14 178 20 S4 S4 NNP cord-293304-kakxmc14 178 21 ) ) -RRB- cord-293304-kakxmc14 178 22 . . . cord-293304-kakxmc14 179 1 The the DT cord-293304-kakxmc14 179 2 linear linear JJ cord-293304-kakxmc14 179 3 equation equation NN cord-293304-kakxmc14 179 4 correlating correlate VBG cord-293304-kakxmc14 179 5 binding bind VBG cord-293304-kakxmc14 179 6 energy energy NN cord-293304-kakxmc14 179 7 and and CC cord-293304-kakxmc14 179 8 descriptors descriptor NNS cord-293304-kakxmc14 179 9 generated generate VBN cord-293304-kakxmc14 179 10 by by IN cord-293304-kakxmc14 179 11 model model NN cord-293304-kakxmc14 179 12 2 2 CD cord-293304-kakxmc14 179 13 can can MD cord-293304-kakxmc14 179 14 be be VB cord-293304-kakxmc14 179 15 written write VBN cord-293304-kakxmc14 179 16 as as IN cord-293304-kakxmc14 179 17 shown show VBN cord-293304-kakxmc14 179 18 in in IN cord-293304-kakxmc14 179 19 eq eq NNP cord-293304-kakxmc14 179 20 1 1 CD cord-293304-kakxmc14 179 21 : : : cord-293304-kakxmc14 180 1 The the DT cord-293304-kakxmc14 180 2 root−mean−square root−mean−square JJ cord-293304-kakxmc14 180 3 error error NN cord-293304-kakxmc14 180 4 for for IN cord-293304-kakxmc14 180 5 cross cross NN cord-293304-kakxmc14 180 6 - - JJ cord-293304-kakxmc14 180 7 validation validation NN cord-293304-kakxmc14 180 8 RMSE RMSE NNP cord-293304-kakxmc14 180 9 cv cv NN cord-293304-kakxmc14 180 10 = = SYM cord-293304-kakxmc14 180 11 0.2296 0.2296 CD cord-293304-kakxmc14 180 12 is be VBZ cord-293304-kakxmc14 180 13 greater great JJR cord-293304-kakxmc14 180 14 than than IN cord-293304-kakxmc14 180 15 RMSE RMSE NNP cord-293304-kakxmc14 180 16 tr tr NNP cord-293304-kakxmc14 180 17 = = SYM cord-293304-kakxmc14 180 18 0.2008 0.2008 CD cord-293304-kakxmc14 180 19 , , , cord-293304-kakxmc14 180 20 making make VBG cord-293304-kakxmc14 180 21 the the DT cord-293304-kakxmc14 180 22 model model NN cord-293304-kakxmc14 180 23 stable stable JJ cord-293304-kakxmc14 180 24 and and CC cord-293304-kakxmc14 180 25 predictive predictive JJ cord-293304-kakxmc14 180 26 . . . cord-293304-kakxmc14 181 1 The the DT cord-293304-kakxmc14 181 2 criteria criterion NNS cord-293304-kakxmc14 181 3 for for IN cord-293304-kakxmc14 181 4 Y Y NNP cord-293304-kakxmc14 181 5 scrambling scramble VBG cord-293304-kakxmc14 181 6 R r NN cord-293304-kakxmc14 181 7 2 2 CD cord-293304-kakxmc14 182 1 y y NNP cord-293304-kakxmc14 182 2 scr scr NNP cord-293304-kakxmc14 182 3 < < NNP cord-293304-kakxmc14 182 4 0.2 0.2 CD cord-293304-kakxmc14 182 5 , , , cord-293304-kakxmc14 182 6 Q Q NNP cord-293304-kakxmc14 182 7 2 2 NNP cord-293304-kakxmc14 182 8 y y NNP cord-293304-kakxmc14 182 9 scr scr VBP cord-293304-kakxmc14 182 10 < < XX cord-293304-kakxmc14 182 11 0.2 0.2 CD cord-293304-kakxmc14 182 12 , , , cord-293304-kakxmc14 182 13 and and CC cord-293304-kakxmc14 182 14 R R NNP cord-293304-kakxmc14 182 15 2 2 CD cord-293304-kakxmc14 182 16 y y NN cord-293304-kakxmc14 182 17 scr scr NNP cord-293304-kakxmc14 183 1 > > XX cord-293304-kakxmc14 184 1 Q Q NNP cord-293304-kakxmc14 185 1 2 2 LS cord-293304-kakxmc14 185 2 y y NNP cord-293304-kakxmc14 185 3 scr scr NNP cord-293304-kakxmc14 185 4 implies imply VBZ cord-293304-kakxmc14 185 5 that that IN cord-293304-kakxmc14 185 6 there there EX cord-293304-kakxmc14 185 7 is be VBZ cord-293304-kakxmc14 185 8 no no DT cord-293304-kakxmc14 185 9 correlation correlation NN cord-293304-kakxmc14 185 10 between between IN cord-293304-kakxmc14 185 11 descriptors descriptor NNS cord-293304-kakxmc14 185 12 , , , cord-293304-kakxmc14 185 13 and and CC cord-293304-kakxmc14 185 14 hence hence RB cord-293304-kakxmc14 185 15 , , , cord-293304-kakxmc14 185 16 the the DT cord-293304-kakxmc14 185 17 model model NN cord-293304-kakxmc14 185 18 is be VBZ cord-293304-kakxmc14 185 19 not not RB cord-293304-kakxmc14 185 20 simply simply RB cord-293304-kakxmc14 185 21 correlated correlate VBN cord-293304-kakxmc14 185 22 by by IN cord-293304-kakxmc14 185 23 chance chance NN cord-293304-kakxmc14 185 24 . . . cord-293304-kakxmc14 186 1 Model model NN cord-293304-kakxmc14 186 2 2 2 CD cord-293304-kakxmc14 186 3 was be VBD cord-293304-kakxmc14 186 4 assessed assess VBN cord-293304-kakxmc14 186 5 with with IN cord-293304-kakxmc14 186 6 external external JJ cord-293304-kakxmc14 186 7 validation validation NN cord-293304-kakxmc14 186 8 parameters parameter NNS cord-293304-kakxmc14 186 9 R r NN cord-293304-kakxmc14 186 10 2 2 CD cord-293304-kakxmc14 186 11 ext ext NN cord-293304-kakxmc14 186 12 > > XX cord-293304-kakxmc14 186 13 0.6 0.6 CD cord-293304-kakxmc14 186 14 and and CC cord-293304-kakxmc14 186 15 small small JJ cord-293304-kakxmc14 186 16 difference difference NN cord-293304-kakxmc14 186 17 between between IN cord-293304-kakxmc14 186 18 RMSE RMSE NNP cord-293304-kakxmc14 186 19 ext ext NNP cord-293304-kakxmc14 186 20 and and CC cord-293304-kakxmc14 186 21 RMSE RMSE NNP cord-293304-kakxmc14 186 22 tr tr NN cord-293304-kakxmc14 186 23 and and CC cord-293304-kakxmc14 186 24 was be VBD cord-293304-kakxmc14 186 25 hence hence RB cord-293304-kakxmc14 186 26 acceptable acceptable JJ cord-293304-kakxmc14 186 27 due due IN cord-293304-kakxmc14 186 28 to to IN cord-293304-kakxmc14 186 29 its -PRON- PRP$ cord-293304-kakxmc14 186 30 high high JJ cord-293304-kakxmc14 186 31 predictivity predictivity NN cord-293304-kakxmc14 186 32 . . . cord-293304-kakxmc14 187 1 The the DT cord-293304-kakxmc14 187 2 predicted predict VBN cord-293304-kakxmc14 187 3 values value NNS cord-293304-kakxmc14 187 4 of of IN cord-293304-kakxmc14 187 5 binding bind VBG cord-293304-kakxmc14 187 6 energy energy NN cord-293304-kakxmc14 187 7 for for IN cord-293304-kakxmc14 187 8 both both DT cord-293304-kakxmc14 187 9 training training NN cord-293304-kakxmc14 187 10 and and CC cord-293304-kakxmc14 187 11 test test NN cord-293304-kakxmc14 187 12 set set VBN cord-293304-kakxmc14 187 13 of of IN cord-293304-kakxmc14 187 14 molecules molecule NNS cord-293304-kakxmc14 187 15 are be VBP cord-293304-kakxmc14 187 16 given give VBN cord-293304-kakxmc14 187 17 in in IN cord-293304-kakxmc14 187 18 Table Table NNP cord-293304-kakxmc14 187 19 _SP cord-293304-kakxmc14 187 20 S5 S5 NNP cord-293304-kakxmc14 187 21 . . . cord-293304-kakxmc14 188 1 The the DT cord-293304-kakxmc14 188 2 plot plot NN cord-293304-kakxmc14 188 3 of of IN cord-293304-kakxmc14 188 4 observed observe VBN cord-293304-kakxmc14 188 5 versus versus IN cord-293304-kakxmc14 188 6 predicted predict VBD cord-293304-kakxmc14 188 7 binding bind VBG cord-293304-kakxmc14 188 8 energy energy NN cord-293304-kakxmc14 188 9 of of IN cord-293304-kakxmc14 188 10 training training NN cord-293304-kakxmc14 188 11 and and CC cord-293304-kakxmc14 188 12 test test NN cord-293304-kakxmc14 188 13 set set NN cord-293304-kakxmc14 188 14 molecules molecule NNS cord-293304-kakxmc14 188 15 is be VBZ cord-293304-kakxmc14 188 16 given give VBN cord-293304-kakxmc14 188 17 in in IN cord-293304-kakxmc14 188 18 Figure Figure NNP cord-293304-kakxmc14 188 19 4 4 CD cord-293304-kakxmc14 188 20 . . . cord-293304-kakxmc14 189 1 Substitution substitution NN cord-293304-kakxmc14 189 2 of of IN cord-293304-kakxmc14 189 3 −Cl −cl NN cord-293304-kakxmc14 189 4 with with IN cord-293304-kakxmc14 189 5 −NH −NH NNP cord-293304-kakxmc14 189 6 2 2 CD cord-293304-kakxmc14 189 7 in in IN cord-293304-kakxmc14 189 8 quinoline quinoline JJ cord-293304-kakxmc14 189 9 scaffold scaffold NN cord-293304-kakxmc14 189 10 in in IN cord-293304-kakxmc14 189 11 compound compound NN cord-293304-kakxmc14 189 12 30 30 CD cord-293304-kakxmc14 189 13 led lead VBD cord-293304-kakxmc14 189 14 to to IN cord-293304-kakxmc14 189 15 inaccurate inaccurate JJ cord-293304-kakxmc14 189 16 prediction prediction NN cord-293304-kakxmc14 189 17 and and CC cord-293304-kakxmc14 189 18 hence hence RB cord-293304-kakxmc14 189 19 was be VBD cord-293304-kakxmc14 189 20 detected detect VBN cord-293304-kakxmc14 189 21 as as IN cord-293304-kakxmc14 189 22 an an DT cord-293304-kakxmc14 189 23 outlier outlier NN cord-293304-kakxmc14 189 24 . . . cord-293304-kakxmc14 190 1 Model model NN cord-293304-kakxmc14 190 2 2 2 CD cord-293304-kakxmc14 190 3 shows show VBZ cord-293304-kakxmc14 190 4 that that IN cord-293304-kakxmc14 190 5 the the DT cord-293304-kakxmc14 190 6 binding bind VBG cord-293304-kakxmc14 190 7 energy energy NN cord-293304-kakxmc14 190 8 is be VBZ cord-293304-kakxmc14 190 9 a a DT cord-293304-kakxmc14 190 10 linear linear JJ cord-293304-kakxmc14 190 11 combination combination NN cord-293304-kakxmc14 190 12 of of IN cord-293304-kakxmc14 190 13 the the DT cord-293304-kakxmc14 190 14 descriptors descriptor NNS cord-293304-kakxmc14 190 15 SCH-7 SCH-7 NNP cord-293304-kakxmc14 190 16 , , , cord-293304-kakxmc14 190 17 nHsNH2 nHsNH2 NNP cord-293304-kakxmc14 190 18 , , , cord-293304-kakxmc14 190 19 minHBint6 minHBint6 NNP cord-293304-kakxmc14 190 20 , , , cord-293304-kakxmc14 190 21 FP402 FP402 NNP cord-293304-kakxmc14 190 22 , , , cord-293304-kakxmc14 190 23 and and CC cord-293304-kakxmc14 190 24 KRFP402 KRFP402 NNP cord-293304-kakxmc14 190 25 . . . cord-293304-kakxmc14 191 1 SCH-7 SCH-7 NNP cord-293304-kakxmc14 191 2 is be VBZ cord-293304-kakxmc14 191 3 simple simple JJ cord-293304-kakxmc14 191 4 seventh seventh JJ cord-293304-kakxmc14 191 5 order order NN cord-293304-kakxmc14 191 6 chi chi NN cord-293304-kakxmc14 191 7 chain chain NN cord-293304-kakxmc14 191 8 that that WDT cord-293304-kakxmc14 191 9 is be VBZ cord-293304-kakxmc14 191 10 a a DT cord-293304-kakxmc14 191 11 topological topological JJ cord-293304-kakxmc14 191 12 descriptor descriptor NN cord-293304-kakxmc14 191 13 based base VBN cord-293304-kakxmc14 191 14 on on IN cord-293304-kakxmc14 191 15 interatomic interatomic JJ cord-293304-kakxmc14 191 16 distances distance NNS cord-293304-kakxmc14 191 17 calculated calculate VBN cord-293304-kakxmc14 191 18 by by IN cord-293304-kakxmc14 191 19 the the DT cord-293304-kakxmc14 191 20 bonds bond NNS cord-293304-kakxmc14 191 21 between between IN cord-293304-kakxmc14 191 22 them -PRON- PRP cord-293304-kakxmc14 191 23 representing represent VBG cord-293304-kakxmc14 191 24 molecular molecular JJ cord-293304-kakxmc14 191 25 connectivity connectivity NN cord-293304-kakxmc14 191 26 as as IN cord-293304-kakxmc14 191 27 a a DT cord-293304-kakxmc14 191 28 chemical chemical NN cord-293304-kakxmc14 191 29 graph graph NN cord-293304-kakxmc14 191 30 like like IN cord-293304-kakxmc14 191 31 a a DT cord-293304-kakxmc14 191 32 bond bond NN cord-293304-kakxmc14 191 33 - - HYPH cord-293304-kakxmc14 191 34 line line NN cord-293304-kakxmc14 191 35 formula formula NN cord-293304-kakxmc14 191 36 of of IN cord-293304-kakxmc14 191 37 chemical chemical JJ cord-293304-kakxmc14 191 38 structures structure NNS cord-293304-kakxmc14 191 39 . . . cord-293304-kakxmc14 192 1 It -PRON- PRP cord-293304-kakxmc14 192 2 considers consider VBZ cord-293304-kakxmc14 192 3 the the DT cord-293304-kakxmc14 192 4 specificity specificity NN cord-293304-kakxmc14 192 5 of of IN cord-293304-kakxmc14 192 6 the the DT cord-293304-kakxmc14 192 7 structures structure NNS cord-293304-kakxmc14 192 8 at at IN cord-293304-kakxmc14 192 9 a a DT cord-293304-kakxmc14 192 10 fragment fragment NN cord-293304-kakxmc14 192 11 level level NN cord-293304-kakxmc14 192 12 rather rather RB cord-293304-kakxmc14 192 13 than than IN cord-293304-kakxmc14 192 14 the the DT cord-293304-kakxmc14 192 15 whole whole JJ cord-293304-kakxmc14 192 16 molecule molecule NN cord-293304-kakxmc14 192 17 . . . cord-293304-kakxmc14 193 1 53 53 CD cord-293304-kakxmc14 194 1 The the DT cord-293304-kakxmc14 194 2 order order NN cord-293304-kakxmc14 194 3 7 7 CD cord-293304-kakxmc14 194 4 represents represent VBZ cord-293304-kakxmc14 194 5 the the DT cord-293304-kakxmc14 194 6 number number NN cord-293304-kakxmc14 194 7 of of IN cord-293304-kakxmc14 194 8 edges edge NNS cord-293304-kakxmc14 194 9 in in IN cord-293304-kakxmc14 194 10 the the DT cord-293304-kakxmc14 194 11 graph graph NN cord-293304-kakxmc14 194 12 , , , cord-293304-kakxmc14 194 13 which which WDT cord-293304-kakxmc14 194 14 indicates indicate VBZ cord-293304-kakxmc14 194 15 the the DT cord-293304-kakxmc14 194 16 branching branching NN cord-293304-kakxmc14 194 17 . . . cord-293304-kakxmc14 195 1 54 54 CD cord-293304-kakxmc14 195 2 , , , cord-293304-kakxmc14 195 3 55 55 CD cord-293304-kakxmc14 196 1 The the DT cord-293304-kakxmc14 196 2 negative negative JJ cord-293304-kakxmc14 196 3 value value NN cord-293304-kakxmc14 196 4 of of IN cord-293304-kakxmc14 196 5 its -PRON- PRP$ cord-293304-kakxmc14 196 6 coefficient coefficient NN cord-293304-kakxmc14 196 7 indicates indicate VBZ cord-293304-kakxmc14 196 8 its -PRON- PRP$ cord-293304-kakxmc14 196 9 negative negative JJ cord-293304-kakxmc14 196 10 impact impact NN cord-293304-kakxmc14 196 11 on on IN cord-293304-kakxmc14 196 12 biological biological JJ cord-293304-kakxmc14 196 13 activity activity NN cord-293304-kakxmc14 196 14 . . . cord-293304-kakxmc14 197 1 Thus thus RB cord-293304-kakxmc14 197 2 , , , cord-293304-kakxmc14 197 3 a a DT cord-293304-kakxmc14 197 4 low low JJ cord-293304-kakxmc14 197 5 value value NN cord-293304-kakxmc14 197 6 for for IN cord-293304-kakxmc14 197 7 SCH-7 SCH-7 NNP cord-293304-kakxmc14 197 8 is be VBZ cord-293304-kakxmc14 197 9 required require VBN cord-293304-kakxmc14 197 10 for for IN cord-293304-kakxmc14 197 11 a a DT cord-293304-kakxmc14 197 12 compound compound NN cord-293304-kakxmc14 197 13 to to TO cord-293304-kakxmc14 197 14 show show VB cord-293304-kakxmc14 197 15 low low JJ cord-293304-kakxmc14 197 16 binding bind VBG cord-293304-kakxmc14 197 17 energy energy NN cord-293304-kakxmc14 197 18 , , , cord-293304-kakxmc14 197 19 which which WDT cord-293304-kakxmc14 197 20 makes make VBZ cord-293304-kakxmc14 197 21 a a DT cord-293304-kakxmc14 197 22 restriction restriction NN cord-293304-kakxmc14 197 23 on on IN cord-293304-kakxmc14 197 24 branching branch VBG cord-293304-kakxmc14 197 25 . . . cord-293304-kakxmc14 198 1 nHsNH2 nHsNH2 NNP cord-293304-kakxmc14 198 2 represents represent VBZ cord-293304-kakxmc14 198 3 the the DT cord-293304-kakxmc14 198 4 number number NN cord-293304-kakxmc14 198 5 of of IN cord-293304-kakxmc14 198 6 NH NH NNP cord-293304-kakxmc14 198 7 2 2 CD cord-293304-kakxmc14 198 8 groups group NNS cord-293304-kakxmc14 198 9 and and CC cord-293304-kakxmc14 198 10 amine amine NN cord-293304-kakxmc14 198 11 hydrogens hydrogen NNS cord-293304-kakxmc14 198 12 . . . cord-293304-kakxmc14 199 1 56 56 CD cord-293304-kakxmc14 200 1 The the DT cord-293304-kakxmc14 200 2 positive positive JJ cord-293304-kakxmc14 200 3 coefficient coefficient NN cord-293304-kakxmc14 200 4 of of IN cord-293304-kakxmc14 200 5 1.0801 1.0801 CD cord-293304-kakxmc14 200 6 indicates indicate VBZ cord-293304-kakxmc14 200 7 that that IN cord-293304-kakxmc14 200 8 as as IN cord-293304-kakxmc14 200 9 the the DT cord-293304-kakxmc14 200 10 number number NN cord-293304-kakxmc14 200 11 of of IN cord-293304-kakxmc14 200 12 NH NH NNP cord-293304-kakxmc14 200 13 2 2 CD cord-293304-kakxmc14 200 14 groups group NNS cord-293304-kakxmc14 200 15 increases increase NNS cord-293304-kakxmc14 200 16 , , , cord-293304-kakxmc14 200 17 the the DT cord-293304-kakxmc14 200 18 binding bind VBG cord-293304-kakxmc14 200 19 energy energy NN cord-293304-kakxmc14 200 20 decreases decrease NNS cord-293304-kakxmc14 200 21 , , , cord-293304-kakxmc14 200 22 which which WDT cord-293304-kakxmc14 200 23 is be VBZ cord-293304-kakxmc14 200 24 in in IN cord-293304-kakxmc14 200 25 perfect perfect JJ cord-293304-kakxmc14 200 26 agreement agreement NN cord-293304-kakxmc14 200 27 57 57 CD cord-293304-kakxmc14 201 1 It -PRON- PRP cord-293304-kakxmc14 201 2 is be VBZ cord-293304-kakxmc14 201 3 an an DT cord-293304-kakxmc14 201 4 atom atom NN cord-293304-kakxmc14 201 5 - - HYPH cord-293304-kakxmc14 201 6 type type NN cord-293304-kakxmc14 201 7 electro electro JJ cord-293304-kakxmc14 201 8 - - HYPH cord-293304-kakxmc14 201 9 topological topological JJ cord-293304-kakxmc14 201 10 state state NN cord-293304-kakxmc14 201 11 descriptor descriptor NN cord-293304-kakxmc14 201 12 in in IN cord-293304-kakxmc14 201 13 which which WDT cord-293304-kakxmc14 201 14 both both CC cord-293304-kakxmc14 201 15 electronic electronic JJ cord-293304-kakxmc14 201 16 and and CC cord-293304-kakxmc14 201 17 topological topological JJ cord-293304-kakxmc14 201 18 functions function NNS cord-293304-kakxmc14 201 19 are be VBP cord-293304-kakxmc14 201 20 considered consider VBN cord-293304-kakxmc14 201 21 . . . cord-293304-kakxmc14 202 1 53 53 CD cord-293304-kakxmc14 203 1 There there EX cord-293304-kakxmc14 203 2 is be VBZ cord-293304-kakxmc14 203 3 a a DT cord-293304-kakxmc14 203 4 positive positive JJ cord-293304-kakxmc14 203 5 dependence dependence NN cord-293304-kakxmc14 203 6 of of IN cord-293304-kakxmc14 203 7 minHBint6 minhbint6 CD cord-293304-kakxmc14 203 8 with with IN cord-293304-kakxmc14 203 9 the the DT cord-293304-kakxmc14 203 10 binding bind VBG cord-293304-kakxmc14 203 11 energy energy NN cord-293304-kakxmc14 203 12 because because IN cord-293304-kakxmc14 203 13 as as IN cord-293304-kakxmc14 203 14 the the DT cord-293304-kakxmc14 203 15 chances chance NNS cord-293304-kakxmc14 203 16 of of IN cord-293304-kakxmc14 203 17 H h NN cord-293304-kakxmc14 203 18 - - HYPH cord-293304-kakxmc14 203 19 bond bond NN cord-293304-kakxmc14 203 20 increases increase NNS cord-293304-kakxmc14 203 21 , , , cord-293304-kakxmc14 203 22 the the DT cord-293304-kakxmc14 203 23 binding bind VBG cord-293304-kakxmc14 203 24 energy energy NN cord-293304-kakxmc14 203 25 will will MD cord-293304-kakxmc14 203 26 be be VB cord-293304-kakxmc14 203 27 more more RBR cord-293304-kakxmc14 203 28 negative negative JJ cord-293304-kakxmc14 203 29 . . . cord-293304-kakxmc14 204 1 FP402 FP402 NNP cord-293304-kakxmc14 205 1 and and CC cord-293304-kakxmc14 205 2 KRFPC476 KRFPC476 NNP cord-293304-kakxmc14 205 3 are be VBP cord-293304-kakxmc14 205 4 fingerprint fingerprint NN cord-293304-kakxmc14 205 5 descriptors descriptor NNS cord-293304-kakxmc14 205 6 , , , cord-293304-kakxmc14 205 7 which which WDT cord-293304-kakxmc14 205 8 account account VBP cord-293304-kakxmc14 205 9 for for IN cord-293304-kakxmc14 205 10 structure structure NN cord-293304-kakxmc14 205 11 , , , cord-293304-kakxmc14 205 12 specific specific JJ cord-293304-kakxmc14 205 13 properties property NNS cord-293304-kakxmc14 205 14 , , , cord-293304-kakxmc14 205 15 connectivity connectivity NN cord-293304-kakxmc14 205 16 , , , cord-293304-kakxmc14 205 17 or or CC cord-293304-kakxmc14 205 18 pharmacophores pharmacophore NNS cord-293304-kakxmc14 205 19 . . . cord-293304-kakxmc14 206 1 58 58 CD cord-293304-kakxmc14 207 1 KRFPC476 KRFPC476 NNP cord-293304-kakxmc14 207 2 accounts account VBZ cord-293304-kakxmc14 207 3 for for IN cord-293304-kakxmc14 207 4 the the DT cord-293304-kakxmc14 207 5 count count NN cord-293304-kakxmc14 207 6 of of IN cord-293304-kakxmc14 207 7 substructures substructure NNS cord-293304-kakxmc14 207 8 also also RB cord-293304-kakxmc14 207 9 . . . cord-293304-kakxmc14 208 1 56 56 CD cord-293304-kakxmc14 208 2 Both both DT cord-293304-kakxmc14 208 3 of of IN cord-293304-kakxmc14 208 4 these these DT cord-293304-kakxmc14 208 5 fingerprints fingerprint NNS cord-293304-kakxmc14 208 6 are be VBP cord-293304-kakxmc14 208 7 inversely inversely RB cord-293304-kakxmc14 208 8 related relate VBN cord-293304-kakxmc14 208 9 to to IN cord-293304-kakxmc14 208 10 binding bind VBG cord-293304-kakxmc14 208 11 energy energy NN cord-293304-kakxmc14 208 12 . . . cord-293304-kakxmc14 209 1 Designing design VBG cord-293304-kakxmc14 209 2 molecules molecule NNS cord-293304-kakxmc14 209 3 in in IN cord-293304-kakxmc14 209 4 such such PDT cord-293304-kakxmc14 209 5 a a DT cord-293304-kakxmc14 209 6 way way NN cord-293304-kakxmc14 209 7 that that WDT cord-293304-kakxmc14 209 8 having have VBG cord-293304-kakxmc14 209 9 high high JJ cord-293304-kakxmc14 209 10 values value NNS cord-293304-kakxmc14 209 11 for for IN cord-293304-kakxmc14 209 12 nHsNH2 nHsNH2 NNP cord-293304-kakxmc14 209 13 and and CC cord-293304-kakxmc14 209 14 minHBint6 minhbint6 CD cord-293304-kakxmc14 209 15 and and CC cord-293304-kakxmc14 209 16 low low JJ cord-293304-kakxmc14 209 17 values value NNS cord-293304-kakxmc14 209 18 for for IN cord-293304-kakxmc14 209 19 SCH-7 SCH-7 NNP cord-293304-kakxmc14 209 20 , , , cord-293304-kakxmc14 209 21 FP402 FP402 NNP cord-293304-kakxmc14 209 22 , , , cord-293304-kakxmc14 209 23 and and CC cord-293304-kakxmc14 209 24 KRFPC476 KRFPC476 NNP cord-293304-kakxmc14 209 25 will will MD cord-293304-kakxmc14 209 26 help help VB cord-293304-kakxmc14 209 27 to to TO cord-293304-kakxmc14 209 28 reduce reduce VB cord-293304-kakxmc14 209 29 the the DT cord-293304-kakxmc14 209 30 binding bind VBG cord-293304-kakxmc14 209 31 energy energy NN cord-293304-kakxmc14 209 32 considerably considerably RB cord-293304-kakxmc14 209 33 . . . cord-293304-kakxmc14 210 1 Compound compound NN cord-293304-kakxmc14 210 2 29 29 CD cord-293304-kakxmc14 210 3 , , , cord-293304-kakxmc14 210 4 primaquine primaquine NNP cord-293304-kakxmc14 210 5 , , , cord-293304-kakxmc14 210 6 shows show VBZ cord-293304-kakxmc14 210 7 the the DT cord-293304-kakxmc14 210 8 least least JJS cord-293304-kakxmc14 210 9 binding binding JJ cord-293304-kakxmc14 210 10 energy energy NN cord-293304-kakxmc14 210 11 among among IN cord-293304-kakxmc14 210 12 the the DT cord-293304-kakxmc14 210 13 CQ CQ NNP cord-293304-kakxmc14 210 14 analogs analog NNS cord-293304-kakxmc14 210 15 . . . cord-293304-kakxmc14 211 1 It -PRON- PRP cord-293304-kakxmc14 211 2 is be VBZ cord-293304-kakxmc14 211 3 the the DT cord-293304-kakxmc14 211 4 only only JJ cord-293304-kakxmc14 211 5 antimalarial antimalarial JJ cord-293304-kakxmc14 211 6 drug drug NN cord-293304-kakxmc14 211 7 that that WDT cord-293304-kakxmc14 211 8 can can MD cord-293304-kakxmc14 211 9 interfere interfere VB cord-293304-kakxmc14 211 10 with with IN cord-293304-kakxmc14 211 11 a a DT cord-293304-kakxmc14 211 12 majority majority NN cord-293304-kakxmc14 211 13 of of IN cord-293304-kakxmc14 211 14 the the DT cord-293304-kakxmc14 211 15 life life NN cord-293304-kakxmc14 211 16 cycle cycle NN cord-293304-kakxmc14 211 17 stages stage NNS cord-293304-kakxmc14 211 18 of of IN cord-293304-kakxmc14 211 19 the the DT cord-293304-kakxmc14 211 20 malarial malarial JJ cord-293304-kakxmc14 211 21 protozoan protozoan NN cord-293304-kakxmc14 211 22 species specie NNS cord-293304-kakxmc14 211 23 . . . cord-293304-kakxmc14 212 1 59 59 CD cord-293304-kakxmc14 212 2 , , , cord-293304-kakxmc14 212 3 60 60 CD cord-293304-kakxmc14 213 1 The the DT cord-293304-kakxmc14 213 2 combined combined JJ cord-293304-kakxmc14 213 3 usage usage NN cord-293304-kakxmc14 213 4 of of IN cord-293304-kakxmc14 213 5 chloroquine chloroquine NN cord-293304-kakxmc14 213 6 and and CC cord-293304-kakxmc14 213 7 primaquine primaquine NNP cord-293304-kakxmc14 213 8 may may MD cord-293304-kakxmc14 213 9 mask mask VB cord-293304-kakxmc14 213 10 chloroquine chloroquine NN cord-293304-kakxmc14 213 11 resistance resistance NN cord-293304-kakxmc14 213 12 . . . cord-293304-kakxmc14 214 1 61 61 CD cord-293304-kakxmc14 215 1 However however RB cord-293304-kakxmc14 215 2 , , , cord-293304-kakxmc14 215 3 its -PRON- PRP$ cord-293304-kakxmc14 215 4 toxic toxic JJ cord-293304-kakxmc14 215 5 effect effect NN cord-293304-kakxmc14 215 6 is be VBZ cord-293304-kakxmc14 215 7 mainly mainly RB cord-293304-kakxmc14 215 8 due due JJ cord-293304-kakxmc14 215 9 to to IN cord-293304-kakxmc14 215 10 the the DT cord-293304-kakxmc14 215 11 hemolytic hemolytic JJ cord-293304-kakxmc14 215 12 lesions lesion NNS cord-293304-kakxmc14 215 13 caused cause VBN cord-293304-kakxmc14 215 14 by by IN cord-293304-kakxmc14 215 15 methemoglobin methemoglobin NNP cord-293304-kakxmc14 215 16 production production NN cord-293304-kakxmc14 215 17 . . . cord-293304-kakxmc14 216 1 59 59 CD cord-293304-kakxmc14 216 2 , , , cord-293304-kakxmc14 216 3 60 60 CD cord-293304-kakxmc14 216 4 It -PRON- PRP cord-293304-kakxmc14 216 5 is be VBZ cord-293304-kakxmc14 216 6 reported report VBN cord-293304-kakxmc14 216 7 that that IN cord-293304-kakxmc14 216 8 introduction introduction NN cord-293304-kakxmc14 216 9 of of IN cord-293304-kakxmc14 216 10 a a DT cord-293304-kakxmc14 216 11 tert tert NN cord-293304-kakxmc14 216 12 - - HYPH cord-293304-kakxmc14 216 13 butyl butyl NN cord-293304-kakxmc14 216 14 group group NN cord-293304-kakxmc14 216 15 at at IN cord-293304-kakxmc14 216 16 C2 C2 NNP cord-293304-kakxmc14 216 17 position position NN cord-293304-kakxmc14 216 18 ( ( -LRB- cord-293304-kakxmc14 216 19 R1 r1 NN cord-293304-kakxmc14 216 20 in in IN cord-293304-kakxmc14 216 21 scaffold scaffold NN cord-293304-kakxmc14 216 22 given give VBN cord-293304-kakxmc14 216 23 in in IN cord-293304-kakxmc14 216 24 Table Table NNP cord-293304-kakxmc14 216 25 4 4 CD cord-293304-kakxmc14 216 26 ) ) -RRB- cord-293304-kakxmc14 216 27 will will MD cord-293304-kakxmc14 216 28 increase increase VB cord-293304-kakxmc14 216 29 the the DT cord-293304-kakxmc14 216 30 efficiency efficiency NN cord-293304-kakxmc14 216 31 and and CC cord-293304-kakxmc14 216 32 is be VBZ cord-293304-kakxmc14 216 33 completely completely RB cord-293304-kakxmc14 216 34 drained drain VBN cord-293304-kakxmc14 216 35 of of IN cord-293304-kakxmc14 216 36 from from IN cord-293304-kakxmc14 216 37 methemoglobin methemoglobin JJ cord-293304-kakxmc14 216 38 production production NN cord-293304-kakxmc14 216 39 as as IN cord-293304-kakxmc14 216 40 in in IN cord-293304-kakxmc14 216 41 compound compound NN cord-293304-kakxmc14 216 42 pq1 pq1 NNS cord-293304-kakxmc14 216 43 . . . cord-293304-kakxmc14 217 1 59,60 59,60 CD cord-293304-kakxmc14 218 1 By by IN cord-293304-kakxmc14 218 2 using use VBG cord-293304-kakxmc14 218 3 the the DT cord-293304-kakxmc14 218 4 formulated formulate VBN cord-293304-kakxmc14 218 5 regression regression NN cord-293304-kakxmc14 218 6 Model Model NNP cord-293304-kakxmc14 218 7 2 2 CD cord-293304-kakxmc14 218 8 , , , cord-293304-kakxmc14 218 9 we -PRON- PRP cord-293304-kakxmc14 218 10 predicted predict VBD cord-293304-kakxmc14 218 11 the the DT cord-293304-kakxmc14 218 12 binding bind VBG cord-293304-kakxmc14 218 13 energy energy NN cord-293304-kakxmc14 218 14 of of IN cord-293304-kakxmc14 218 15 some some DT cord-293304-kakxmc14 218 16 primaquine primaquine NN cord-293304-kakxmc14 218 17 analogs analog NNS cord-293304-kakxmc14 218 18 obtained obtain VBN cord-293304-kakxmc14 218 19 from from IN cord-293304-kakxmc14 218 20 the the DT cord-293304-kakxmc14 218 21 literature literature NN cord-293304-kakxmc14 218 22 and and CC cord-293304-kakxmc14 218 23 PubChem PubChem NNP cord-293304-kakxmc14 218 24 database database NN cord-293304-kakxmc14 218 25 and and CC cord-293304-kakxmc14 218 26 then then RB cord-293304-kakxmc14 218 27 carried carry VBD cord-293304-kakxmc14 218 28 out out RP cord-293304-kakxmc14 218 29 their -PRON- PRP$ cord-293304-kakxmc14 218 30 molecular molecular JJ cord-293304-kakxmc14 218 31 docking docking NN cord-293304-kakxmc14 218 32 studies study NNS cord-293304-kakxmc14 218 33 on on IN cord-293304-kakxmc14 218 34 3CL 3cl CD cord-293304-kakxmc14 218 35 pro pro JJ cord-293304-kakxmc14 218 36 target target NN cord-293304-kakxmc14 218 37 to to TO cord-293304-kakxmc14 218 38 check check VB cord-293304-kakxmc14 218 39 the the DT cord-293304-kakxmc14 218 40 inhibitory inhibitory JJ cord-293304-kakxmc14 218 41 potency potency NN cord-293304-kakxmc14 218 42 of of IN cord-293304-kakxmc14 218 43 the the DT cord-293304-kakxmc14 218 44 ligands ligand NNS cord-293304-kakxmc14 218 45 , , , cord-293304-kakxmc14 218 46 given give VBN cord-293304-kakxmc14 218 47 in in IN cord-293304-kakxmc14 218 48 Table Table NNP cord-293304-kakxmc14 218 49 4 4 CD cord-293304-kakxmc14 218 50 . . . cord-293304-kakxmc14 219 1 Also also RB cord-293304-kakxmc14 219 2 screened screen VBN cord-293304-kakxmc14 219 3 , , , cord-293304-kakxmc14 219 4 10,584 10,584 CD cord-293304-kakxmc14 219 5 Asinex Asinex NNP cord-293304-kakxmc14 219 6 compounds compound NNS cord-293304-kakxmc14 219 7 having have VBG cord-293304-kakxmc14 219 8 antiviral antiviral JJ cord-293304-kakxmc14 219 9 properties property NNS cord-293304-kakxmc14 219 10 using use VBG cord-293304-kakxmc14 219 11 the the DT cord-293304-kakxmc14 219 12 regression regression NN cord-293304-kakxmc14 219 13 model model NN cord-293304-kakxmc14 219 14 2 2 CD cord-293304-kakxmc14 219 15 . . . cord-293304-kakxmc14 220 1 It -PRON- PRP cord-293304-kakxmc14 220 2 was be VBD cord-293304-kakxmc14 220 3 observed observe VBN cord-293304-kakxmc14 220 4 that that IN cord-293304-kakxmc14 220 5 the the DT cord-293304-kakxmc14 220 6 predicted predict VBN cord-293304-kakxmc14 220 7 binding bind VBG cord-293304-kakxmc14 220 8 energy energy NN cord-293304-kakxmc14 220 9 of of IN cord-293304-kakxmc14 220 10 some some DT cord-293304-kakxmc14 220 11 compounds compound NNS cord-293304-kakxmc14 220 12 obtained obtain VBN cord-293304-kakxmc14 220 13 from from IN cord-293304-kakxmc14 220 14 Journal Journal NNP cord-293304-kakxmc14 220 15 of of IN cord-293304-kakxmc14 220 16 Proteome Proteome NNP cord-293304-kakxmc14 220 17 Research Research NNP cord-293304-kakxmc14 220 18 pubs.acs.org/jpr pubs.acs.org/jpr NNP cord-293304-kakxmc14 220 19 Article Article NNP cord-293304-kakxmc14 220 20 the the DT cord-293304-kakxmc14 220 21 Asinex Asinex NNP cord-293304-kakxmc14 220 22 database database NN cord-293304-kakxmc14 220 23 differed differ VBD cord-293304-kakxmc14 220 24 largely largely RB cord-293304-kakxmc14 220 25 from from IN cord-293304-kakxmc14 220 26 its -PRON- PRP$ cord-293304-kakxmc14 220 27 actual actual JJ cord-293304-kakxmc14 220 28 value value NN cord-293304-kakxmc14 220 29 , , , cord-293304-kakxmc14 220 30 which which WDT cord-293304-kakxmc14 220 31 was be VBD cord-293304-kakxmc14 220 32 obtained obtain VBN cord-293304-kakxmc14 220 33 from from IN cord-293304-kakxmc14 220 34 docking docking NN cord-293304-kakxmc14 220 35 analysis analysis NN cord-293304-kakxmc14 220 36 . . . cord-293304-kakxmc14 221 1 This this DT cord-293304-kakxmc14 221 2 may may MD cord-293304-kakxmc14 221 3 be be VB cord-293304-kakxmc14 221 4 due due JJ cord-293304-kakxmc14 221 5 to to IN cord-293304-kakxmc14 221 6 their -PRON- PRP$ cord-293304-kakxmc14 221 7 difference difference NN cord-293304-kakxmc14 221 8 in in IN cord-293304-kakxmc14 221 9 scaffold scaffold NN cord-293304-kakxmc14 221 10 from from IN cord-293304-kakxmc14 221 11 that that DT cord-293304-kakxmc14 221 12 of of IN cord-293304-kakxmc14 221 13 the the DT cord-293304-kakxmc14 221 14 compounds compound NNS cord-293304-kakxmc14 221 15 used use VBN cord-293304-kakxmc14 221 16 to to TO cord-293304-kakxmc14 221 17 build build VB cord-293304-kakxmc14 221 18 the the DT cord-293304-kakxmc14 221 19 regression regression NN cord-293304-kakxmc14 221 20 model model NN cord-293304-kakxmc14 221 21 . . . cord-293304-kakxmc14 222 1 Even even RB cord-293304-kakxmc14 222 2 though though IN cord-293304-kakxmc14 222 3 the the DT cord-293304-kakxmc14 222 4 predicted predict VBN cord-293304-kakxmc14 222 5 binding bind VBG cord-293304-kakxmc14 222 6 energy energy NN cord-293304-kakxmc14 222 7 was be VBD cord-293304-kakxmc14 222 8 less less RBR cord-293304-kakxmc14 222 9 accurate accurate JJ cord-293304-kakxmc14 222 10 , , , cord-293304-kakxmc14 222 11 they -PRON- PRP cord-293304-kakxmc14 222 12 have have VBP cord-293304-kakxmc14 222 13 furnished furnish VBN cord-293304-kakxmc14 222 14 better well RBR cord-293304-kakxmc14 222 15 binding bind VBG cord-293304-kakxmc14 222 16 energies energy NNS cord-293304-kakxmc14 222 17 on on IN cord-293304-kakxmc14 222 18 docking docking NN cord-293304-kakxmc14 222 19 with with IN cord-293304-kakxmc14 222 20 the the DT cord-293304-kakxmc14 222 21 target target NN cord-293304-kakxmc14 222 22 protein protein NN cord-293304-kakxmc14 222 23 implying imply VBG cord-293304-kakxmc14 222 24 the the DT cord-293304-kakxmc14 222 25 reliability reliability NN cord-293304-kakxmc14 222 26 of of IN cord-293304-kakxmc14 222 27 the the DT cord-293304-kakxmc14 222 28 model model NN cord-293304-kakxmc14 222 29 . . . cord-293304-kakxmc14 223 1 Thirty thirty CD cord-293304-kakxmc14 223 2 molecules molecule NNS cord-293304-kakxmc14 223 3 that that WDT cord-293304-kakxmc14 223 4 showed show VBD cord-293304-kakxmc14 223 5 lower low JJR cord-293304-kakxmc14 223 6 binding binding JJ cord-293304-kakxmc14 223 7 energies energy NNS cord-293304-kakxmc14 223 8 were be VBD cord-293304-kakxmc14 223 9 subjected subject VBN cord-293304-kakxmc14 223 10 to to IN cord-293304-kakxmc14 223 11 molecular molecular JJ cord-293304-kakxmc14 223 12 docking docking NN cord-293304-kakxmc14 223 13 analysis analysis NN cord-293304-kakxmc14 223 14 to to TO cord-293304-kakxmc14 223 15 identify identify VB cord-293304-kakxmc14 223 16 the the DT cord-293304-kakxmc14 223 17 potent potent JJ cord-293304-kakxmc14 223 18 3CL 3cl CD cord-293304-kakxmc14 223 19 pro pro JJ cord-293304-kakxmc14 223 20 inhibitors inhibitor NNS cord-293304-kakxmc14 223 21 ( ( -LRB- cord-293304-kakxmc14 223 22 Supplementary Supplementary NNP cord-293304-kakxmc14 223 23 Figure Figure NNP cord-293304-kakxmc14 223 24 _SP cord-293304-kakxmc14 223 25 S5 S5 NNP cord-293304-kakxmc14 223 26 ) ) -RRB- cord-293304-kakxmc14 223 27 . . . cord-293304-kakxmc14 224 1 Binding bind VBG cord-293304-kakxmc14 224 2 energies energy NNS cord-293304-kakxmc14 224 3 obtained obtain VBN cord-293304-kakxmc14 224 4 through through IN cord-293304-kakxmc14 224 5 both both CC cord-293304-kakxmc14 224 6 the the DT cord-293304-kakxmc14 224 7 methods method NNS cord-293304-kakxmc14 224 8 and and CC cord-293304-kakxmc14 224 9 their -PRON- PRP$ cord-293304-kakxmc14 224 10 interactions interaction NNS cord-293304-kakxmc14 224 11 with with IN cord-293304-kakxmc14 224 12 the the DT cord-293304-kakxmc14 224 13 receptor receptor NN cord-293304-kakxmc14 224 14 protein protein NN cord-293304-kakxmc14 224 15 are be VBP cord-293304-kakxmc14 224 16 given give VBN cord-293304-kakxmc14 224 17 in in IN cord-293304-kakxmc14 224 18 Table Table NNP cord-293304-kakxmc14 224 19 _SP cord-293304-kakxmc14 224 20 5 5 CD cord-293304-kakxmc14 224 21 . . . cord-293304-kakxmc14 225 1 All all PDT cord-293304-kakxmc14 225 2 the the DT cord-293304-kakxmc14 225 3 primaquine primaquine NN cord-293304-kakxmc14 225 4 analogs analog NNS cord-293304-kakxmc14 225 5 showed show VBD cord-293304-kakxmc14 225 6 lower low JJR cord-293304-kakxmc14 225 7 binding binding JJ cord-293304-kakxmc14 225 8 energies energy NNS cord-293304-kakxmc14 225 9 than than IN cord-293304-kakxmc14 225 10 CQ CQ NNP cord-293304-kakxmc14 225 11 and and CC cord-293304-kakxmc14 225 12 HCQ HCQ NNP cord-293304-kakxmc14 225 13 . . . cord-293304-kakxmc14 226 1 All all PDT cord-293304-kakxmc14 226 2 the the DT cord-293304-kakxmc14 226 3 compounds compound NNS cord-293304-kakxmc14 226 4 except except IN cord-293304-kakxmc14 226 5 pq5 pq5 NNP cord-293304-kakxmc14 226 6 furnished furnish VBN cord-293304-kakxmc14 226 7 binding binding JJ cord-293304-kakxmc14 226 8 energies energy NNS cord-293304-kakxmc14 226 9 lower low JJR cord-293304-kakxmc14 226 10 than than IN cord-293304-kakxmc14 226 11 that that DT cord-293304-kakxmc14 226 12 of of IN cord-293304-kakxmc14 226 13 primaquine primaquine NN cord-293304-kakxmc14 226 14 . . . cord-293304-kakxmc14 227 1 The the DT cord-293304-kakxmc14 227 2 binding bind VBG cord-293304-kakxmc14 227 3 energies energy NNS cord-293304-kakxmc14 227 4 calculated calculate VBN cord-293304-kakxmc14 227 5 using use VBG cord-293304-kakxmc14 227 6 the the DT cord-293304-kakxmc14 227 7 regression regression NN cord-293304-kakxmc14 227 8 Model Model NNP cord-293304-kakxmc14 227 9 2 2 CD cord-293304-kakxmc14 227 10 are be VBP cord-293304-kakxmc14 227 11 in in IN cord-293304-kakxmc14 227 12 good good JJ cord-293304-kakxmc14 227 13 agreement agreement NN cord-293304-kakxmc14 227 14 with with IN cord-293304-kakxmc14 227 15 the the DT cord-293304-kakxmc14 227 16 value value NN cord-293304-kakxmc14 227 17 obtained obtain VBN cord-293304-kakxmc14 227 18 from from IN cord-293304-kakxmc14 227 19 docking docking NN cord-293304-kakxmc14 227 20 analysis analysis NN cord-293304-kakxmc14 227 21 . . . cord-293304-kakxmc14 228 1 All all PDT cord-293304-kakxmc14 228 2 the the DT cord-293304-kakxmc14 228 3 compounds compound NNS cord-293304-kakxmc14 228 4 exhibited exhibit VBD cord-293304-kakxmc14 228 5 interactions interaction NNS cord-293304-kakxmc14 228 6 with with IN cord-293304-kakxmc14 228 7 some some DT cord-293304-kakxmc14 228 8 of of IN cord-293304-kakxmc14 228 9 the the DT cord-293304-kakxmc14 228 10 active active JJ cord-293304-kakxmc14 228 11 site site NN cord-293304-kakxmc14 228 12 residues residue NNS cord-293304-kakxmc14 228 13 including include VBG cord-293304-kakxmc14 228 14 the the DT cord-293304-kakxmc14 228 15 catalytic catalytic JJ cord-293304-kakxmc14 228 16 diad diad VBN cord-293304-kakxmc14 228 17 residues residue NNS cord-293304-kakxmc14 229 1 either either CC cord-293304-kakxmc14 229 2 Cys145 Cys145 NNP cord-293304-kakxmc14 230 1 or or CC cord-293304-kakxmc14 230 2 His41 His41 NNP cord-293304-kakxmc14 231 1 or or CC cord-293304-kakxmc14 231 2 both both DT cord-293304-kakxmc14 231 3 , , , cord-293304-kakxmc14 231 4 which which WDT cord-293304-kakxmc14 231 5 make make VBP cord-293304-kakxmc14 231 6 them -PRON- PRP cord-293304-kakxmc14 231 7 potent potent JJ cord-293304-kakxmc14 231 8 3CL 3cl CD cord-293304-kakxmc14 231 9 pro pro JJ cord-293304-kakxmc14 231 10 inhibitors inhibitor NNS cord-293304-kakxmc14 231 11 . . . cord-293304-kakxmc14 232 1 The the DT cord-293304-kakxmc14 232 2 compounds compound NNS cord-293304-kakxmc14 232 3 pq8 pq8 VBP cord-293304-kakxmc14 232 4 , , , cord-293304-kakxmc14 232 5 pq9 pq9 VBN cord-293304-kakxmc14 232 6 , , , cord-293304-kakxmc14 232 7 and and CC cord-293304-kakxmc14 232 8 pq10 pq10 NNP cord-293304-kakxmc14 232 9 exhibited exhibit VBD cord-293304-kakxmc14 232 10 lower lower RBR cord-293304-kakxmc14 232 11 binding bind VBG cord-293304-kakxmc14 232 12 energies energy NNS cord-293304-kakxmc14 232 13 of of IN cord-293304-kakxmc14 232 14 −8.58 −8.58 NNP cord-293304-kakxmc14 232 15 , , , cord-293304-kakxmc14 233 1 −8.48 −8.48 NNP cord-293304-kakxmc14 233 2 , , , cord-293304-kakxmc14 233 3 and and CC cord-293304-kakxmc14 233 4 −8.32 −8.32 NNP cord-293304-kakxmc14 233 5 kcal kcal NNP cord-293304-kakxmc14 233 6 / / SYM cord-293304-kakxmc14 233 7 mol mol NN cord-293304-kakxmc14 233 8 . . . cord-293304-kakxmc14 234 1 The the DT cord-293304-kakxmc14 234 2 2D 2d NN cord-293304-kakxmc14 234 3 interaction interaction NN cord-293304-kakxmc14 234 4 diagrams diagram NNS cord-293304-kakxmc14 234 5 of of IN cord-293304-kakxmc14 234 6 these these DT cord-293304-kakxmc14 234 7 ligands ligand NNS cord-293304-kakxmc14 234 8 with with IN cord-293304-kakxmc14 234 9 the the DT cord-293304-kakxmc14 234 10 protein protein NN cord-293304-kakxmc14 234 11 are be VBP cord-293304-kakxmc14 234 12 given give VBN cord-293304-kakxmc14 234 13 in in IN cord-293304-kakxmc14 234 14 Figure Figure NNP cord-293304-kakxmc14 234 15 5 5 CD cord-293304-kakxmc14 234 16 . . . cord-293304-kakxmc14 235 1 In in IN cord-293304-kakxmc14 235 2 accordance accordance NN cord-293304-kakxmc14 235 3 with with IN cord-293304-kakxmc14 235 4 the the DT cord-293304-kakxmc14 235 5 findings finding NNS cord-293304-kakxmc14 235 6 based base VBN cord-293304-kakxmc14 235 7 on on IN cord-293304-kakxmc14 235 8 docking docking NN cord-293304-kakxmc14 235 9 studies study NNS cord-293304-kakxmc14 235 10 , , , cord-293304-kakxmc14 235 11 the the DT cord-293304-kakxmc14 235 12 regression regression NN cord-293304-kakxmc14 235 13 analysis analysis NN cord-293304-kakxmc14 235 14 of of IN cord-293304-kakxmc14 235 15 CQ CQ NNP cord-293304-kakxmc14 235 16 analogs analog NNS cord-293304-kakxmc14 235 17 reveals reveal VBZ cord-293304-kakxmc14 235 18 the the DT cord-293304-kakxmc14 235 19 presence presence NN cord-293304-kakxmc14 235 20 of of IN cord-293304-kakxmc14 235 21 one one CD cord-293304-kakxmc14 235 22 extra extra JJ cord-293304-kakxmc14 235 23 −NH −nh NN cord-293304-kakxmc14 235 24 2 2 CD cord-293304-kakxmc14 235 25 bond bond NN cord-293304-kakxmc14 235 26 in in IN cord-293304-kakxmc14 235 27 their -PRON- PRP$ cord-293304-kakxmc14 235 28 structure structure NN cord-293304-kakxmc14 235 29 . . . cord-293304-kakxmc14 236 1 Inspecting inspect VBG cord-293304-kakxmc14 236 2 the the DT cord-293304-kakxmc14 236 3 2D 2d NN cord-293304-kakxmc14 236 4 interaction interaction NN cord-293304-kakxmc14 236 5 diagrams diagram NNS cord-293304-kakxmc14 236 6 of of IN cord-293304-kakxmc14 236 7 compounds compound NNS cord-293304-kakxmc14 236 8 A6 A6 NNP cord-293304-kakxmc14 236 9 , , , cord-293304-kakxmc14 236 10 A9 A9 NNP cord-293304-kakxmc14 236 11 , , , cord-293304-kakxmc14 236 12 A10 A10 NNP cord-293304-kakxmc14 236 13 , , , cord-293304-kakxmc14 236 14 A15 A15 NNP cord-293304-kakxmc14 236 15 , , , cord-293304-kakxmc14 236 16 A16 A16 NNP cord-293304-kakxmc14 236 17 , , , cord-293304-kakxmc14 236 18 A23 A23 NNP cord-293304-kakxmc14 236 19 , , , cord-293304-kakxmc14 236 20 A29 A29 NNP cord-293304-kakxmc14 236 21 , , , cord-293304-kakxmc14 236 22 A30 A30 NNP cord-293304-kakxmc14 236 23 it -PRON- PRP cord-293304-kakxmc14 236 24 can can MD cord-293304-kakxmc14 236 25 be be VB cord-293304-kakxmc14 236 26 seen see VBN cord-293304-kakxmc14 236 27 that that IN cord-293304-kakxmc14 236 28 there there EX cord-293304-kakxmc14 236 29 are be VBP cord-293304-kakxmc14 236 30 unfavorable unfavorable JJ cord-293304-kakxmc14 236 31 donor−donor donor−donor CD cord-293304-kakxmc14 236 32 or or CC cord-293304-kakxmc14 236 33 acceptor acceptor NN cord-293304-kakxmc14 236 34 - - HYPH cord-293304-kakxmc14 236 35 acceptor acceptor NN cord-293304-kakxmc14 236 36 interactions interaction NNS cord-293304-kakxmc14 236 37 present present JJ cord-293304-kakxmc14 236 38 between between IN cord-293304-kakxmc14 236 39 the the DT cord-293304-kakxmc14 236 40 compounds compound NNS cord-293304-kakxmc14 236 41 and and CC cord-293304-kakxmc14 236 42 target target NN cord-293304-kakxmc14 236 43 protein protein NN cord-293304-kakxmc14 236 44 which which WDT cord-293304-kakxmc14 236 45 may may MD cord-293304-kakxmc14 236 46 negatively negatively RB cord-293304-kakxmc14 236 47 affect affect VB cord-293304-kakxmc14 236 48 the the DT cord-293304-kakxmc14 236 49 stability stability NN cord-293304-kakxmc14 236 50 of of IN cord-293304-kakxmc14 236 51 the the DT cord-293304-kakxmc14 236 52 docked dock VBN cord-293304-kakxmc14 236 53 complexes complex NNS cord-293304-kakxmc14 236 54 ( ( -LRB- cord-293304-kakxmc14 236 55 Supplementary supplementary JJ cord-293304-kakxmc14 236 56 Figure figure NN cord-293304-kakxmc14 236 57 S6 S6 NNP cord-293304-kakxmc14 236 58 ) ) -RRB- cord-293304-kakxmc14 236 59 . . . cord-293304-kakxmc14 237 1 Hence hence RB cord-293304-kakxmc14 237 2 these these DT cord-293304-kakxmc14 237 3 can can MD cord-293304-kakxmc14 237 4 be be VB cord-293304-kakxmc14 237 5 considered consider VBN cord-293304-kakxmc14 237 6 as as IN cord-293304-kakxmc14 237 7 poor poor JJ cord-293304-kakxmc14 237 8 inhibitors inhibitor NNS cord-293304-kakxmc14 237 9 of of IN cord-293304-kakxmc14 237 10 3CL 3CL NNP cord-293304-kakxmc14 237 11 pro pro JJ cord-293304-kakxmc14 237 12 protein protein NN cord-293304-kakxmc14 237 13 even even RB cord-293304-kakxmc14 237 14 though though IN cord-293304-kakxmc14 237 15 they -PRON- PRP cord-293304-kakxmc14 237 16 have have VBP cord-293304-kakxmc14 237 17 binding bind VBG cord-293304-kakxmc14 237 18 energies energy NNS cord-293304-kakxmc14 237 19 less less JJR cord-293304-kakxmc14 237 20 than than IN cord-293304-kakxmc14 237 21 HCQ HCQ NNP cord-293304-kakxmc14 237 22 . . . cord-293304-kakxmc14 238 1 From from IN cord-293304-kakxmc14 238 2 these these DT cord-293304-kakxmc14 238 3 results result NNS cord-293304-kakxmc14 238 4 it -PRON- PRP cord-293304-kakxmc14 238 5 is be VBZ cord-293304-kakxmc14 238 6 clear clear JJ cord-293304-kakxmc14 238 7 that that IN cord-293304-kakxmc14 238 8 binding bind VBG cord-293304-kakxmc14 238 9 energy energy NN cord-293304-kakxmc14 238 10 as as RB cord-293304-kakxmc14 238 11 well well RB cord-293304-kakxmc14 238 12 as as IN cord-293304-kakxmc14 238 13 interactions interaction NNS cord-293304-kakxmc14 238 14 play play VBP cord-293304-kakxmc14 238 15 decisive decisive JJ cord-293304-kakxmc14 238 16 roles role NNS cord-293304-kakxmc14 238 17 in in IN cord-293304-kakxmc14 238 18 determining determine VBG cord-293304-kakxmc14 238 19 the the DT cord-293304-kakxmc14 238 20 druggability druggability NN cord-293304-kakxmc14 238 21 of of IN cord-293304-kakxmc14 238 22 compounds compound NNS cord-293304-kakxmc14 238 23 . . . cord-293304-kakxmc14 239 1 Asinex Asinex NNP cord-293304-kakxmc14 239 2 database database NN cord-293304-kakxmc14 239 3 compounds compound NNS cord-293304-kakxmc14 239 4 A12 A12 NNP cord-293304-kakxmc14 239 5 , , , cord-293304-kakxmc14 239 6 A5 A5 NNP cord-293304-kakxmc14 239 7 , , , cord-293304-kakxmc14 239 8 A13 A13 NNP cord-293304-kakxmc14 239 9 , , , cord-293304-kakxmc14 239 10 A11 A11 NNP cord-293304-kakxmc14 239 11 , , , cord-293304-kakxmc14 239 12 A20 A20 NNP cord-293304-kakxmc14 239 13 , , , cord-293304-kakxmc14 239 14 A19 A19 NNP cord-293304-kakxmc14 239 15 , , , cord-293304-kakxmc14 239 16 A18 A18 NNP cord-293304-kakxmc14 239 17 , , , cord-293304-kakxmc14 239 18 A4 A4 NNP cord-293304-kakxmc14 239 19 , , , cord-293304-kakxmc14 239 20 A14 A14 NNP cord-293304-kakxmc14 239 21 , , , cord-293304-kakxmc14 239 22 and and CC cord-293304-kakxmc14 239 23 A3 A3 NNP cord-293304-kakxmc14 239 24 obtained obtain VBD cord-293304-kakxmc14 239 25 lower low JJR cord-293304-kakxmc14 239 26 binding binding NN cord-293304-kakxmc14 239 27 energies energy NNS cord-293304-kakxmc14 239 28 among among IN cord-293304-kakxmc14 239 29 all all DT cord-293304-kakxmc14 240 1 ( ( -LRB- cord-293304-kakxmc14 240 2 Figure figure NN cord-293304-kakxmc14 240 3 5 5 CD cord-293304-kakxmc14 240 4 and and CC cord-293304-kakxmc14 240 5 Figure Figure NNP cord-293304-kakxmc14 240 6 S7 S7 NNP cord-293304-kakxmc14 240 7 ) ) -RRB- cord-293304-kakxmc14 240 8 . . . cord-293304-kakxmc14 241 1 These these DT cord-293304-kakxmc14 241 2 compounds compound NNS cord-293304-kakxmc14 241 3 form form VBP cord-293304-kakxmc14 241 4 interactions interaction NNS cord-293304-kakxmc14 241 5 with with IN cord-293304-kakxmc14 241 6 Cys145 cys145 ADD cord-293304-kakxmc14 241 7 , , , cord-293304-kakxmc14 241 8 His -PRON- PRP$ cord-293304-kakxmc14 241 9 41 41 CD cord-293304-kakxmc14 241 10 , , , cord-293304-kakxmc14 241 11 or or CC cord-293304-kakxmc14 241 12 both both DT cord-293304-kakxmc14 241 13 along along IN cord-293304-kakxmc14 241 14 with with IN cord-293304-kakxmc14 241 15 other other JJ cord-293304-kakxmc14 241 16 active active JJ cord-293304-kakxmc14 241 17 site site NN cord-293304-kakxmc14 241 18 residues residue NNS cord-293304-kakxmc14 241 19 , , , cord-293304-kakxmc14 241 20 which which WDT cord-293304-kakxmc14 241 21 are be VBP cord-293304-kakxmc14 241 22 responsible responsible JJ cord-293304-kakxmc14 241 23 for for IN cord-293304-kakxmc14 241 24 their -PRON- PRP$ cord-293304-kakxmc14 241 25 inhibitory inhibitory JJ cord-293304-kakxmc14 241 26 property property NN cord-293304-kakxmc14 241 27 . . . cord-293304-kakxmc14 242 1 The the DT cord-293304-kakxmc14 242 2 compounds compound NNS cord-293304-kakxmc14 242 3 A12 A12 NNP cord-293304-kakxmc14 242 4 , , , cord-293304-kakxmc14 242 5 A5 A5 NNP cord-293304-kakxmc14 242 6 , , , cord-293304-kakxmc14 242 7 A13 A13 NNP cord-293304-kakxmc14 242 8 , , , cord-293304-kakxmc14 242 9 A11 A11 NNP cord-293304-kakxmc14 242 10 , , , cord-293304-kakxmc14 242 11 A19 A19 NNP cord-293304-kakxmc14 242 12 , , , cord-293304-kakxmc14 242 13 and and CC cord-293304-kakxmc14 242 14 A14 A14 NNP cord-293304-kakxmc14 242 15 form form NN cord-293304-kakxmc14 242 16 hydrogen hydrogen NN cord-293304-kakxmc14 242 17 bonding bonding NN cord-293304-kakxmc14 242 18 interactions interaction NNS cord-293304-kakxmc14 242 19 with with IN cord-293304-kakxmc14 242 20 Cys145 Cys145 NNP cord-293304-kakxmc14 242 21 , , , cord-293304-kakxmc14 242 22 which which WDT cord-293304-kakxmc14 242 23 will will MD cord-293304-kakxmc14 242 24 obstruct obstruct VB cord-293304-kakxmc14 242 25 the the DT cord-293304-kakxmc14 242 26 initial initial JJ cord-293304-kakxmc14 242 27 deprotonation deprotonation NN cord-293304-kakxmc14 242 28 step step NN cord-293304-kakxmc14 242 29 in in IN cord-293304-kakxmc14 242 30 the the DT cord-293304-kakxmc14 242 31 catalytic catalytic JJ cord-293304-kakxmc14 242 32 cycle cycle NN cord-293304-kakxmc14 242 33 of of IN cord-293304-kakxmc14 242 34 3CL 3CL NNP cord-293304-kakxmc14 242 35 pro pro NNP cord-293304-kakxmc14 242 36 as as IN cord-293304-kakxmc14 242 37 shown show VBN cord-293304-kakxmc14 242 38 in in IN cord-293304-kakxmc14 242 39 Figure figure NN cord-293304-kakxmc14 242 40 1 1 CD cord-293304-kakxmc14 242 41 . . . cord-293304-kakxmc14 243 1 The the DT cord-293304-kakxmc14 243 2 π−π π−π NNP cord-293304-kakxmc14 243 3 interaction interaction NN cord-293304-kakxmc14 243 4 of of IN cord-293304-kakxmc14 243 5 His -PRON- PRP$ cord-293304-kakxmc14 243 6 41 41 CD cord-293304-kakxmc14 243 7 with with IN cord-293304-kakxmc14 243 8 π π CD cord-293304-kakxmc14 243 9 systems system NNS cord-293304-kakxmc14 243 10 of of IN cord-293304-kakxmc14 243 11 the the DT cord-293304-kakxmc14 243 12 compounds compound NNS cord-293304-kakxmc14 243 13 A12 A12 NNP cord-293304-kakxmc14 243 14 and and CC cord-293304-kakxmc14 243 15 A5 A5 NNP cord-293304-kakxmc14 243 16 will will MD cord-293304-kakxmc14 243 17 affect affect VB cord-293304-kakxmc14 243 18 the the DT cord-293304-kakxmc14 243 19 proton proton NN cord-293304-kakxmc14 243 20 accepting accept VBG cord-293304-kakxmc14 243 21 ability ability NN cord-293304-kakxmc14 243 22 of of IN cord-293304-kakxmc14 243 23 His41 His41 NNP cord-293304-kakxmc14 243 24 . . . cord-293304-kakxmc14 244 1 The the DT cord-293304-kakxmc14 244 2 π−sulfur π−sulfur CD cord-293304-kakxmc14 244 3 interactions interaction NNS cord-293304-kakxmc14 244 4 are be VBP cord-293304-kakxmc14 244 5 present present JJ cord-293304-kakxmc14 244 6 in in IN cord-293304-kakxmc14 244 7 aromatic aromatic JJ cord-293304-kakxmc14 244 8 rings ring NNS cord-293304-kakxmc14 244 9 with with IN cord-293304-kakxmc14 244 10 −SH −sh CD cord-293304-kakxmc14 244 11 group group NN cord-293304-kakxmc14 244 12 of of IN cord-293304-kakxmc14 244 13 the the DT cord-293304-kakxmc14 244 14 compounds compound NNS cord-293304-kakxmc14 244 15 A13 A13 NNP cord-293304-kakxmc14 244 16 , , , cord-293304-kakxmc14 244 17 A20 A20 NNP cord-293304-kakxmc14 244 18 , , , cord-293304-kakxmc14 244 19 A18 A18 NNP cord-293304-kakxmc14 244 20 , , , cord-293304-kakxmc14 244 21 A4 A4 NNP cord-293304-kakxmc14 244 22 , , , cord-293304-kakxmc14 244 23 A14 A14 NNP cord-293304-kakxmc14 244 24 , , , cord-293304-kakxmc14 244 25 and and CC cord-293304-kakxmc14 244 26 A3 A3 NNP cord-293304-kakxmc14 244 27 with with IN cord-293304-kakxmc14 244 28 Cys145 cys145 CD cord-293304-kakxmc14 244 29 residue residue NN cord-293304-kakxmc14 244 30 . . . cord-293304-kakxmc14 245 1 It -PRON- PRP cord-293304-kakxmc14 245 2 involves involve VBZ cord-293304-kakxmc14 245 3 the the DT cord-293304-kakxmc14 245 4 interaction interaction NN cord-293304-kakxmc14 245 5 with with IN cord-293304-kakxmc14 245 6 the the DT cord-293304-kakxmc14 245 7 aromatic aromatic JJ cord-293304-kakxmc14 245 8 π π NNP cord-293304-kakxmc14 245 9 orbitals orbital NNS cord-293304-kakxmc14 245 10 and and CC cord-293304-kakxmc14 245 11 σ σ NNP cord-293304-kakxmc14 245 12 * * NFP cord-293304-kakxmc14 245 13 acceptor acceptor NN cord-293304-kakxmc14 245 14 orbital orbital JJ cord-293304-kakxmc14 245 15 of of IN cord-293304-kakxmc14 245 16 SH SH NNP cord-293304-kakxmc14 245 17 bond bond NN cord-293304-kakxmc14 245 18 of of IN cord-293304-kakxmc14 245 19 Cys145 cys145 CD cord-293304-kakxmc14 245 20 . . . cord-293304-kakxmc14 246 1 S−H S−H NNP cord-293304-kakxmc14 247 1 / / NFP cord-293304-kakxmc14 248 1 π π LS cord-293304-kakxmc14 249 1 interactions interaction NNS cord-293304-kakxmc14 249 2 are be VBP cord-293304-kakxmc14 249 3 the the DT cord-293304-kakxmc14 249 4 important important JJ cord-293304-kakxmc14 249 5 contributors contributor NNS cord-293304-kakxmc14 249 6 to to IN cord-293304-kakxmc14 249 7 binding bind VBG cord-293304-kakxmc14 249 8 energy energy NN cord-293304-kakxmc14 249 9 . . . cord-293304-kakxmc14 250 1 62 62 CD cord-293304-kakxmc14 251 1 The the DT cord-293304-kakxmc14 251 2 thiol thiol NN cord-293304-kakxmc14 251 3 group group NN cord-293304-kakxmc14 251 4 of of IN cord-293304-kakxmc14 251 5 Cys145 Cys145 NNP cord-293304-kakxmc14 251 6 is be VBZ cord-293304-kakxmc14 251 7 engaged engage VBN cord-293304-kakxmc14 251 8 in in IN cord-293304-kakxmc14 251 9 S−H S−H NNP cord-293304-kakxmc14 251 10 / / SYM cord-293304-kakxmc14 251 11 π π NN cord-293304-kakxmc14 252 1 Comparing compare VBG cord-293304-kakxmc14 252 2 the the DT cord-293304-kakxmc14 252 3 structures structure NNS cord-293304-kakxmc14 252 4 of of IN cord-293304-kakxmc14 252 5 the the DT cord-293304-kakxmc14 252 6 hit hit NN cord-293304-kakxmc14 252 7 compounds compound NNS cord-293304-kakxmc14 252 8 pq8 pq8 JJ cord-293304-kakxmc14 252 9 , , , cord-293304-kakxmc14 252 10 pq9 pq9 VBN cord-293304-kakxmc14 252 11 , , , cord-293304-kakxmc14 252 12 pq10 pq10 NNP cord-293304-kakxmc14 252 13 , , , cord-293304-kakxmc14 252 14 and and CC cord-293304-kakxmc14 252 15 A12 A12 NNP cord-293304-kakxmc14 252 16 with with IN cord-293304-kakxmc14 252 17 the the DT cord-293304-kakxmc14 252 18 rest rest NN cord-293304-kakxmc14 252 19 , , , cord-293304-kakxmc14 252 20 it -PRON- PRP cord-293304-kakxmc14 252 21 was be VBD cord-293304-kakxmc14 252 22 clear clear JJ cord-293304-kakxmc14 252 23 that that IN cord-293304-kakxmc14 252 24 the the DT cord-293304-kakxmc14 252 25 high high JJ cord-293304-kakxmc14 252 26 flexibility flexibility NN cord-293304-kakxmc14 252 27 of of IN cord-293304-kakxmc14 252 28 the the DT cord-293304-kakxmc14 252 29 structures structure NNS cord-293304-kakxmc14 252 30 owing owe VBG cord-293304-kakxmc14 252 31 to to IN cord-293304-kakxmc14 252 32 more more JJR cord-293304-kakxmc14 252 33 single single JJ cord-293304-kakxmc14 252 34 bonds bond NNS cord-293304-kakxmc14 252 35 and and CC cord-293304-kakxmc14 252 36 less less RBR cord-293304-kakxmc14 252 37 compact compact JJ cord-293304-kakxmc14 252 38 rings ring NNS cord-293304-kakxmc14 252 39 makes make VBZ cord-293304-kakxmc14 252 40 them -PRON- PRP cord-293304-kakxmc14 252 41 able able JJ cord-293304-kakxmc14 252 42 to to TO cord-293304-kakxmc14 252 43 undergo undergo VB cord-293304-kakxmc14 252 44 conformational conformational JJ cord-293304-kakxmc14 252 45 changes change NNS cord-293304-kakxmc14 252 46 at at IN cord-293304-kakxmc14 252 47 the the DT cord-293304-kakxmc14 252 48 active active JJ cord-293304-kakxmc14 252 49 site site NN cord-293304-kakxmc14 252 50 of of IN cord-293304-kakxmc14 252 51 the the DT cord-293304-kakxmc14 252 52 target target NN cord-293304-kakxmc14 252 53 leading lead VBG cord-293304-kakxmc14 252 54 to to IN cord-293304-kakxmc14 252 55 more more JJR cord-293304-kakxmc14 252 56 interactions interaction NNS cord-293304-kakxmc14 252 57 with with IN cord-293304-kakxmc14 252 58 Cys145 cys145 ADD cord-293304-kakxmc14 252 59 and and CC cord-293304-kakxmc14 252 60 His41 His41 NNP cord-293304-kakxmc14 252 61 along along IN cord-293304-kakxmc14 252 62 with with IN cord-293304-kakxmc14 252 63 other other JJ cord-293304-kakxmc14 252 64 active active JJ cord-293304-kakxmc14 252 65 site site NN cord-293304-kakxmc14 252 66 residues residue NNS cord-293304-kakxmc14 252 67 . . . cord-293304-kakxmc14 253 1 Hence hence RB cord-293304-kakxmc14 253 2 , , , cord-293304-kakxmc14 253 3 these these DT cord-293304-kakxmc14 253 4 four four CD cord-293304-kakxmc14 253 5 compounds compound NNS cord-293304-kakxmc14 253 6 were be VBD cord-293304-kakxmc14 253 7 selected select VBN cord-293304-kakxmc14 253 8 for for IN cord-293304-kakxmc14 253 9 further further JJ cord-293304-kakxmc14 253 10 analysis analysis NN cord-293304-kakxmc14 253 11 . . . cord-293304-kakxmc14 254 1 Even even RB cord-293304-kakxmc14 254 2 though though IN cord-293304-kakxmc14 254 3 docking docking NN cord-293304-kakxmc14 254 4 studies study NNS cord-293304-kakxmc14 254 5 give give VBP cord-293304-kakxmc14 254 6 the the DT cord-293304-kakxmc14 254 7 best good JJS cord-293304-kakxmc14 254 8 binding binding NN cord-293304-kakxmc14 254 9 poses pose NNS cord-293304-kakxmc14 254 10 , , , cord-293304-kakxmc14 254 11 they -PRON- PRP cord-293304-kakxmc14 254 12 do do VBP cord-293304-kakxmc14 254 13 not not RB cord-293304-kakxmc14 254 14 account account VB cord-293304-kakxmc14 254 15 for for IN cord-293304-kakxmc14 254 16 the the DT cord-293304-kakxmc14 254 17 conformational conformational JJ cord-293304-kakxmc14 254 18 changes change NNS cord-293304-kakxmc14 254 19 taking take VBG cord-293304-kakxmc14 254 20 place place NN cord-293304-kakxmc14 254 21 upon upon IN cord-293304-kakxmc14 254 22 ligand ligand NN cord-293304-kakxmc14 254 23 binding binding NN cord-293304-kakxmc14 254 24 as as IN cord-293304-kakxmc14 254 25 the the DT cord-293304-kakxmc14 254 26 docking docking NN cord-293304-kakxmc14 254 27 analysis analysis NN cord-293304-kakxmc14 254 28 preferably preferably RB cord-293304-kakxmc14 254 29 treats treat VBZ cord-293304-kakxmc14 254 30 protein protein NN cord-293304-kakxmc14 254 31 as as IN cord-293304-kakxmc14 254 32 rigid rigid JJ cord-293304-kakxmc14 254 33 . . . cord-293304-kakxmc14 255 1 The the DT cord-293304-kakxmc14 255 2 conformational conformational JJ cord-293304-kakxmc14 255 3 changes change NNS cord-293304-kakxmc14 255 4 affecting affect VBG cord-293304-kakxmc14 255 5 the the DT cord-293304-kakxmc14 255 6 binding bind VBG cord-293304-kakxmc14 255 7 affinity affinity NN cord-293304-kakxmc14 255 8 could could MD cord-293304-kakxmc14 255 9 be be VB cord-293304-kakxmc14 255 10 analyzed analyze VBN cord-293304-kakxmc14 255 11 using use VBG cord-293304-kakxmc14 255 12 molecular molecular JJ cord-293304-kakxmc14 255 13 dynamic dynamic JJ cord-293304-kakxmc14 255 14 simulations simulation NNS cord-293304-kakxmc14 255 15 . . . cord-293304-kakxmc14 256 1 63 63 CD cord-293304-kakxmc14 256 2 Four four CD cord-293304-kakxmc14 256 3 top top NN cord-293304-kakxmc14 256 4 ranked rank VBN cord-293304-kakxmc14 256 5 compounds compound NNS cord-293304-kakxmc14 256 6 via via IN cord-293304-kakxmc14 256 7 docking docking NN cord-293304-kakxmc14 256 8 ( ( -LRB- cord-293304-kakxmc14 256 9 pq8 pq8 NNS cord-293304-kakxmc14 256 10 , , , cord-293304-kakxmc14 256 11 pq9 pq9 VBN cord-293304-kakxmc14 256 12 , , , cord-293304-kakxmc14 256 13 pq10 pq10 NNP cord-293304-kakxmc14 256 14 , , , cord-293304-kakxmc14 256 15 and and CC cord-293304-kakxmc14 256 16 A12 A12 NNP cord-293304-kakxmc14 256 17 ) ) -RRB- cord-293304-kakxmc14 256 18 were be VBD cord-293304-kakxmc14 256 19 selected select VBN cord-293304-kakxmc14 256 20 for for IN cord-293304-kakxmc14 256 21 20 20 CD cord-293304-kakxmc14 256 22 ns ns NNP cord-293304-kakxmc14 256 23 molecular molecular JJ cord-293304-kakxmc14 256 24 dynamics dynamic NNS cord-293304-kakxmc14 256 25 simulation simulation NN cord-293304-kakxmc14 256 26 studies study NNS cord-293304-kakxmc14 256 27 to to TO cord-293304-kakxmc14 256 28 understand understand VB cord-293304-kakxmc14 256 29 the the DT cord-293304-kakxmc14 256 30 conformational conformational JJ cord-293304-kakxmc14 256 31 changes change NNS cord-293304-kakxmc14 256 32 in in IN cord-293304-kakxmc14 256 33 the the DT cord-293304-kakxmc14 256 34 protein protein NN cord-293304-kakxmc14 256 35 on on IN cord-293304-kakxmc14 256 36 binding bind VBG cord-293304-kakxmc14 256 37 of of IN cord-293304-kakxmc14 256 38 the the DT cord-293304-kakxmc14 256 39 ligand ligand NN cord-293304-kakxmc14 256 40 . . . cord-293304-kakxmc14 257 1 RMSD RMSD NNP cord-293304-kakxmc14 257 2 , , , cord-293304-kakxmc14 257 3 RMSF RMSF NNP cord-293304-kakxmc14 257 4 , , , cord-293304-kakxmc14 257 5 and and CC cord-293304-kakxmc14 257 6 Radius Radius NNP cord-293304-kakxmc14 257 7 of of IN cord-293304-kakxmc14 257 8 gyration gyration NN cord-293304-kakxmc14 257 9 plots plot NNS cord-293304-kakxmc14 257 10 were be VBD cord-293304-kakxmc14 257 11 used use VBN cord-293304-kakxmc14 257 12 to to TO cord-293304-kakxmc14 257 13 evaluate evaluate VB cord-293304-kakxmc14 257 14 the the DT cord-293304-kakxmc14 257 15 stability stability NN cord-293304-kakxmc14 257 16 of of IN cord-293304-kakxmc14 257 17 the the DT cord-293304-kakxmc14 257 18 complexes complex NNS cord-293304-kakxmc14 257 19 . . . cord-293304-kakxmc14 258 1 The the DT cord-293304-kakxmc14 258 2 binding bind VBG cord-293304-kakxmc14 258 3 conformations conformation NNS cord-293304-kakxmc14 258 4 of of IN cord-293304-kakxmc14 258 5 the the DT cord-293304-kakxmc14 258 6 compounds compound NNS cord-293304-kakxmc14 258 7 at at IN cord-293304-kakxmc14 258 8 the the DT cord-293304-kakxmc14 258 9 last last JJ cord-293304-kakxmc14 258 10 frame frame NN cord-293304-kakxmc14 258 11 of of IN cord-293304-kakxmc14 258 12 simulation simulation NN cord-293304-kakxmc14 258 13 are be VBP cord-293304-kakxmc14 258 14 given give VBN cord-293304-kakxmc14 258 15 in in IN cord-293304-kakxmc14 258 16 Figure Figure NNP cord-293304-kakxmc14 258 17 _SP cord-293304-kakxmc14 258 18 6 6 CD cord-293304-kakxmc14 258 19 . . . cord-293304-kakxmc14 259 1 The the DT cord-293304-kakxmc14 259 2 root−mean−square root−mean−square JJ cord-293304-kakxmc14 259 3 deviation deviation NN cord-293304-kakxmc14 259 4 ( ( -LRB- cord-293304-kakxmc14 259 5 RMSD RMSD NNP cord-293304-kakxmc14 259 6 ) ) -RRB- cord-293304-kakxmc14 259 7 plot plot NN cord-293304-kakxmc14 259 8 of of IN cord-293304-kakxmc14 259 9 apoprotein apoprotein NNP cord-293304-kakxmc14 259 10 3CL 3CL NNP cord-293304-kakxmc14 259 11 pro pro JJ cord-293304-kakxmc14 259 12 , , , cord-293304-kakxmc14 259 13 pq8 pq8 JJ cord-293304-kakxmc14 259 14 , , , cord-293304-kakxmc14 259 15 pq9 pq9 VBN cord-293304-kakxmc14 259 16 , , , cord-293304-kakxmc14 259 17 pq10 pq10 NNP cord-293304-kakxmc14 259 18 , , , cord-293304-kakxmc14 259 19 and and CC cord-293304-kakxmc14 259 20 A12 A12 NNP cord-293304-kakxmc14 259 21 with with IN cord-293304-kakxmc14 259 22 average average JJ cord-293304-kakxmc14 259 23 RMSDs rmsd NNS cord-293304-kakxmc14 259 24 1.75 1.75 CD cord-293304-kakxmc14 259 25 , , , cord-293304-kakxmc14 259 26 1.65 1.65 CD cord-293304-kakxmc14 259 27 , , , cord-293304-kakxmc14 259 28 1.93 1.93 CD cord-293304-kakxmc14 259 29 , , , cord-293304-kakxmc14 259 30 2.02 2.02 CD cord-293304-kakxmc14 259 31 , , , cord-293304-kakxmc14 259 32 and and CC cord-293304-kakxmc14 259 33 1.86 1.86 CD cord-293304-kakxmc14 259 34 Å å NN cord-293304-kakxmc14 259 35 , , , cord-293304-kakxmc14 259 36 respectively respectively RB cord-293304-kakxmc14 259 37 , , , cord-293304-kakxmc14 259 38 is be VBZ cord-293304-kakxmc14 259 39 given give VBN cord-293304-kakxmc14 259 40 in in IN cord-293304-kakxmc14 259 41 Figure figure NN cord-293304-kakxmc14 259 42 7a 7a NN cord-293304-kakxmc14 259 43 . . . cord-293304-kakxmc14 260 1 It -PRON- PRP cord-293304-kakxmc14 260 2 can can MD cord-293304-kakxmc14 260 3 be be VB cord-293304-kakxmc14 260 4 inferred infer VBN cord-293304-kakxmc14 260 5 that that IN cord-293304-kakxmc14 260 6 for for IN cord-293304-kakxmc14 260 7 the the DT cord-293304-kakxmc14 260 8 apo apo NNP cord-293304-kakxmc14 260 9 structure structure NN cord-293304-kakxmc14 260 10 as as RB cord-293304-kakxmc14 260 11 well well RB cord-293304-kakxmc14 260 12 as as IN cord-293304-kakxmc14 260 13 the the DT cord-293304-kakxmc14 260 14 docked dock VBN cord-293304-kakxmc14 260 15 complexes complex NNS cord-293304-kakxmc14 260 16 except except IN cord-293304-kakxmc14 260 17 pq10 pq10 NNP cord-293304-kakxmc14 260 18 , , , cord-293304-kakxmc14 260 19 RMSD RMSD NNP cord-293304-kakxmc14 260 20 values value NNS cord-293304-kakxmc14 260 21 rose rise VBD cord-293304-kakxmc14 260 22 to to IN cord-293304-kakxmc14 260 23 2.54 2.54 CD cord-293304-kakxmc14 260 24 Å å NN cord-293304-kakxmc14 260 25 and and CC cord-293304-kakxmc14 260 26 then then RB cord-293304-kakxmc14 260 27 formed form VBD cord-293304-kakxmc14 260 28 a a DT cord-293304-kakxmc14 260 29 plateau plateau NN cord-293304-kakxmc14 260 30 after after IN cord-293304-kakxmc14 260 31 12 12 CD cord-293304-kakxmc14 260 32 ns n NNS cord-293304-kakxmc14 260 33 of of IN cord-293304-kakxmc14 260 34 simulation simulation NN cord-293304-kakxmc14 260 35 , , , cord-293304-kakxmc14 260 36 which which WDT cord-293304-kakxmc14 260 37 indicates indicate VBZ cord-293304-kakxmc14 260 38 that that IN cord-293304-kakxmc14 260 39 the the DT cord-293304-kakxmc14 260 40 system system NN cord-293304-kakxmc14 260 41 has have VBZ cord-293304-kakxmc14 260 42 reached reach VBN cord-293304-kakxmc14 260 43 stable stable JJ cord-293304-kakxmc14 260 44 equilibrium equilibrium NN cord-293304-kakxmc14 260 45 state state NN cord-293304-kakxmc14 260 46 and and CC cord-293304-kakxmc14 260 47 has have VBZ cord-293304-kakxmc14 260 48 been be VBN cord-293304-kakxmc14 260 49 confined confine VBN cord-293304-kakxmc14 260 50 in in IN cord-293304-kakxmc14 260 51 the the DT cord-293304-kakxmc14 260 52 active active JJ cord-293304-kakxmc14 260 53 site site NN cord-293304-kakxmc14 260 54 . . . cord-293304-kakxmc14 261 1 The the DT cord-293304-kakxmc14 261 2 RMSD RMSD NNP cord-293304-kakxmc14 261 3 of of IN cord-293304-kakxmc14 261 4 pq10 pq10 NNP cord-293304-kakxmc14 261 5 requires require VBZ cord-293304-kakxmc14 261 6 an an DT cord-293304-kakxmc14 261 7 extension extension NN cord-293304-kakxmc14 261 8 of of IN cord-293304-kakxmc14 261 9 stabilization stabilization NN cord-293304-kakxmc14 261 10 time time NN cord-293304-kakxmc14 261 11 to to TO cord-293304-kakxmc14 261 12 reach reach VB cord-293304-kakxmc14 262 1 The the DT cord-293304-kakxmc14 262 2 root−mean−square root−mean−square JJ cord-293304-kakxmc14 262 3 fluctuation fluctuation NN cord-293304-kakxmc14 262 4 ( ( -LRB- cord-293304-kakxmc14 262 5 RMSF RMSF NNP cord-293304-kakxmc14 262 6 ) ) -RRB- cord-293304-kakxmc14 262 7 plot plot NN cord-293304-kakxmc14 262 8 gives give VBZ cord-293304-kakxmc14 262 9 the the DT cord-293304-kakxmc14 262 10 fluctuations fluctuation NNS cord-293304-kakxmc14 262 11 of of IN cord-293304-kakxmc14 262 12 individual individual JJ cord-293304-kakxmc14 262 13 residues residue NNS cord-293304-kakxmc14 262 14 in in IN cord-293304-kakxmc14 262 15 the the DT cord-293304-kakxmc14 262 16 protein protein NN cord-293304-kakxmc14 262 17 backbone backbone NN cord-293304-kakxmc14 262 18 . . . cord-293304-kakxmc14 263 1 64 64 CD cord-293304-kakxmc14 263 2 Higher high JJR cord-293304-kakxmc14 263 3 RMSF RMSF NNP cord-293304-kakxmc14 263 4 denotes denote VBZ cord-293304-kakxmc14 263 5 higher high JJR cord-293304-kakxmc14 263 6 flexibility flexibility NN cord-293304-kakxmc14 263 7 and and CC cord-293304-kakxmc14 263 8 vice vice NN cord-293304-kakxmc14 263 9 versa versa RB cord-293304-kakxmc14 263 10 . . . cord-293304-kakxmc14 264 1 65 65 CD cord-293304-kakxmc14 265 1 The the DT cord-293304-kakxmc14 265 2 RMSF rmsf JJ cord-293304-kakxmc14 265 3 plot plot NN cord-293304-kakxmc14 265 4 ( ( -LRB- cord-293304-kakxmc14 265 5 Figure figure NN cord-293304-kakxmc14 265 6 7b 7b CD cord-293304-kakxmc14 265 7 ) ) -RRB- cord-293304-kakxmc14 265 8 showed show VBD cord-293304-kakxmc14 265 9 greater great JJR cord-293304-kakxmc14 265 10 residue residue NN cord-293304-kakxmc14 265 11 flexibility flexibility NN cord-293304-kakxmc14 265 12 for for IN cord-293304-kakxmc14 265 13 pq9 pq9 VBN cord-293304-kakxmc14 265 14 and and CC cord-293304-kakxmc14 265 15 pq10 pq10 NNS cord-293304-kakxmc14 265 16 compared compare VBN cord-293304-kakxmc14 265 17 to to IN cord-293304-kakxmc14 265 18 the the DT cord-293304-kakxmc14 265 19 unbound unbound JJ cord-293304-kakxmc14 265 20 form form NN cord-293304-kakxmc14 265 21 . . . cord-293304-kakxmc14 266 1 pq8 pq8 NNP cord-293304-kakxmc14 266 2 and and CC cord-293304-kakxmc14 266 3 A12 A12 NNP cord-293304-kakxmc14 266 4 have have VBP cord-293304-kakxmc14 266 5 comparable comparable JJ cord-293304-kakxmc14 266 6 RMSF rmsf JJ cord-293304-kakxmc14 266 7 values value NNS cord-293304-kakxmc14 266 8 with with IN cord-293304-kakxmc14 266 9 that that DT cord-293304-kakxmc14 266 10 of of IN cord-293304-kakxmc14 266 11 the the DT cord-293304-kakxmc14 266 12 apo apo NNP cord-293304-kakxmc14 266 13 form form NN cord-293304-kakxmc14 266 14 . . . cord-293304-kakxmc14 267 1 The the DT cord-293304-kakxmc14 267 2 Cys145 cys145 NN cord-293304-kakxmc14 267 3 and and CC cord-293304-kakxmc14 267 4 His41 His41 NNP cord-293304-kakxmc14 267 5 residues residue NNS cord-293304-kakxmc14 267 6 involved involve VBN cord-293304-kakxmc14 267 7 in in IN cord-293304-kakxmc14 267 8 the the DT cord-293304-kakxmc14 267 9 catalytic catalytic JJ cord-293304-kakxmc14 267 10 cycle cycle NN cord-293304-kakxmc14 267 11 have have VBP cord-293304-kakxmc14 267 12 fluctuations fluctuation NNS cord-293304-kakxmc14 267 13 with with IN cord-293304-kakxmc14 267 14 greater great JJR cord-293304-kakxmc14 267 15 than than IN cord-293304-kakxmc14 267 16 0.7 0.7 CD cord-293304-kakxmc14 267 17 Å å NN cord-293304-kakxmc14 267 18 in in IN cord-293304-kakxmc14 267 19 apoprotein apoprotein NNP cord-293304-kakxmc14 267 20 . . . cord-293304-kakxmc14 268 1 In in IN cord-293304-kakxmc14 268 2 pq8 pq8 JJ cord-293304-kakxmc14 268 3 and and CC cord-293304-kakxmc14 268 4 pq9 pq9 VBN cord-293304-kakxmc14 268 5 , , , cord-293304-kakxmc14 268 6 it -PRON- PRP cord-293304-kakxmc14 268 7 fluctuates fluctuate VBZ cord-293304-kakxmc14 268 8 more more JJR cord-293304-kakxmc14 268 9 than than IN cord-293304-kakxmc14 268 10 3 3 CD cord-293304-kakxmc14 268 11 Å å NN cord-293304-kakxmc14 268 12 , , , cord-293304-kakxmc14 268 13 while while IN cord-293304-kakxmc14 268 14 in in IN cord-293304-kakxmc14 268 15 pq10 pq10 NN cord-293304-kakxmc14 268 16 and and CC cord-293304-kakxmc14 268 17 A12 A12 NNP cord-293304-kakxmc14 268 18 , , , cord-293304-kakxmc14 268 19 there there EX cord-293304-kakxmc14 268 20 is be VBZ cord-293304-kakxmc14 268 21 fluctuation fluctuation NN cord-293304-kakxmc14 268 22 less less JJR cord-293304-kakxmc14 268 23 than than IN cord-293304-kakxmc14 268 24 0.6 0.6 CD cord-293304-kakxmc14 268 25 Å. å. NN cord-293304-kakxmc14 269 1 In in IN cord-293304-kakxmc14 269 2 all all PDT cord-293304-kakxmc14 269 3 the the DT cord-293304-kakxmc14 269 4 systems system NNS cord-293304-kakxmc14 269 5 , , , cord-293304-kakxmc14 269 6 the the DT cord-293304-kakxmc14 269 7 active active JJ cord-293304-kakxmc14 269 8 site site NN cord-293304-kakxmc14 269 9 residues residue NNS cord-293304-kakxmc14 269 10 from from IN cord-293304-kakxmc14 269 11 140 140 CD cord-293304-kakxmc14 269 12 to to TO cord-293304-kakxmc14 269 13 190 190 CD cord-293304-kakxmc14 269 14 have have VBP cord-293304-kakxmc14 269 15 the the DT cord-293304-kakxmc14 269 16 highest high JJS cord-293304-kakxmc14 269 17 fluctuations fluctuation NNS cord-293304-kakxmc14 269 18 . . . cord-293304-kakxmc14 270 1 The the DT cord-293304-kakxmc14 270 2 structural structural JJ cord-293304-kakxmc14 270 3 flexibility flexibility NN cord-293304-kakxmc14 270 4 or or CC cord-293304-kakxmc14 270 5 compactness compactness NN cord-293304-kakxmc14 270 6 of of IN cord-293304-kakxmc14 270 7 the the DT cord-293304-kakxmc14 270 8 protein protein NN cord-293304-kakxmc14 270 9 molecule molecule NN cord-293304-kakxmc14 270 10 is be VBZ cord-293304-kakxmc14 270 11 analyzed analyze VBN cord-293304-kakxmc14 270 12 by by IN cord-293304-kakxmc14 270 13 the the DT cord-293304-kakxmc14 270 14 radius radius NN cord-293304-kakxmc14 270 15 of of IN cord-293304-kakxmc14 270 16 gyration gyration NN cord-293304-kakxmc14 270 17 . . . cord-293304-kakxmc14 271 1 66 66 CD cord-293304-kakxmc14 272 1 The the DT cord-293304-kakxmc14 272 2 protein protein NN cord-293304-kakxmc14 272 3 is be VBZ cord-293304-kakxmc14 272 4 supposed suppose VBN cord-293304-kakxmc14 272 5 to to TO cord-293304-kakxmc14 272 6 maintain maintain VB cord-293304-kakxmc14 272 7 a a DT cord-293304-kakxmc14 272 8 relatively relatively RB cord-293304-kakxmc14 272 9 steady steady JJ cord-293304-kakxmc14 272 10 value value NN cord-293304-kakxmc14 272 11 for for IN cord-293304-kakxmc14 272 12 R r NN cord-293304-kakxmc14 272 13 g g NN cord-293304-kakxmc14 272 14 . . . cord-293304-kakxmc14 273 1 From from IN cord-293304-kakxmc14 273 2 inspection inspection NN cord-293304-kakxmc14 273 3 of of IN cord-293304-kakxmc14 273 4 Figure Figure NNP cord-293304-kakxmc14 273 5 7c 7c CD cord-293304-kakxmc14 273 6 , , , cord-293304-kakxmc14 273 7 it -PRON- PRP cord-293304-kakxmc14 273 8 can can MD cord-293304-kakxmc14 273 9 be be VB cord-293304-kakxmc14 273 10 seen see VBN cord-293304-kakxmc14 273 11 that that IN cord-293304-kakxmc14 273 12 R r NN cord-293304-kakxmc14 273 13 g g NN cord-293304-kakxmc14 273 14 has have VBZ cord-293304-kakxmc14 273 15 almost almost RB cord-293304-kakxmc14 273 16 no no DT cord-293304-kakxmc14 273 17 significant significant JJ cord-293304-kakxmc14 273 18 variance variance NN cord-293304-kakxmc14 273 19 with with IN cord-293304-kakxmc14 273 20 the the DT cord-293304-kakxmc14 273 21 average average JJ cord-293304-kakxmc14 273 22 R r NN cord-293304-kakxmc14 273 23 g g NN cord-293304-kakxmc14 273 24 values value NNS cord-293304-kakxmc14 273 25 of of IN cord-293304-kakxmc14 273 26 22 22 CD cord-293304-kakxmc14 273 27 Å. å. NN cord-293304-kakxmc14 274 1 The the DT cord-293304-kakxmc14 274 2 ligand ligand NN cord-293304-kakxmc14 274 3 bound bind VBN cord-293304-kakxmc14 274 4 form form NN cord-293304-kakxmc14 274 5 has have VBZ cord-293304-kakxmc14 274 6 lower low JJR cord-293304-kakxmc14 274 7 R r NN cord-293304-kakxmc14 274 8 g g NN cord-293304-kakxmc14 274 9 values value NNS cord-293304-kakxmc14 274 10 compared compare VBN cord-293304-kakxmc14 274 11 to to IN cord-293304-kakxmc14 274 12 apoprotein apoprotein NNP cord-293304-kakxmc14 274 13 , , , cord-293304-kakxmc14 274 14 which which WDT cord-293304-kakxmc14 274 15 indicates indicate VBZ cord-293304-kakxmc14 274 16 that that IN cord-293304-kakxmc14 274 17 the the DT cord-293304-kakxmc14 274 18 bound bind VBN cord-293304-kakxmc14 274 19 structures structure NNS cord-293304-kakxmc14 274 20 are be VBP cord-293304-kakxmc14 274 21 more more RBR cord-293304-kakxmc14 274 22 compact compact JJ cord-293304-kakxmc14 274 23 . . . cord-293304-kakxmc14 275 1 Molecular molecular JJ cord-293304-kakxmc14 275 2 docking docking NN cord-293304-kakxmc14 275 3 analysis analysis NN cord-293304-kakxmc14 275 4 of of IN cord-293304-kakxmc14 275 5 chloroquine chloroquine NNP cord-293304-kakxmc14 275 6 and and CC cord-293304-kakxmc14 275 7 hydroxychloroquine hydroxychloroquine NN cord-293304-kakxmc14 275 8 on on IN cord-293304-kakxmc14 275 9 main main JJ cord-293304-kakxmc14 275 10 protease protease NN cord-293304-kakxmc14 276 1 ( ( -LRB- cord-293304-kakxmc14 276 2 3CL 3CL NNP cord-293304-kakxmc14 276 3 pro pro JJ cord-293304-kakxmc14 276 4 ) ) -RRB- cord-293304-kakxmc14 276 5 protein protein NN cord-293304-kakxmc14 276 6 has have VBZ cord-293304-kakxmc14 276 7 shown show VBN cord-293304-kakxmc14 276 8 that that IN cord-293304-kakxmc14 276 9 HCQ HCQ NNP cord-293304-kakxmc14 276 10 is be VBZ cord-293304-kakxmc14 276 11 more more RBR cord-293304-kakxmc14 276 12 efficient efficient JJ cord-293304-kakxmc14 276 13 than than IN cord-293304-kakxmc14 276 14 CQ CQ NNP cord-293304-kakxmc14 276 15 . . . cord-293304-kakxmc14 277 1 More more RBR cord-293304-kakxmc14 277 2 potent potent JJ cord-293304-kakxmc14 277 3 inhibitors inhibitor NNS cord-293304-kakxmc14 277 4 of of IN cord-293304-kakxmc14 277 5 3CL 3CL NNP cord-293304-kakxmc14 277 6 pro pro JJ cord-293304-kakxmc14 277 7 have have VBP cord-293304-kakxmc14 277 8 been be VBN cord-293304-kakxmc14 277 9 identified identify VBN cord-293304-kakxmc14 277 10 through through IN cord-293304-kakxmc14 277 11 docking docking NN cord-293304-kakxmc14 277 12 studies study NNS cord-293304-kakxmc14 277 13 . . . cord-293304-kakxmc14 278 1 The the DT cord-293304-kakxmc14 278 2 interactions interaction NNS cord-293304-kakxmc14 278 3 with with IN cord-293304-kakxmc14 278 4 the the DT cord-293304-kakxmc14 278 5 active active JJ cord-293304-kakxmc14 278 6 site site NN cord-293304-kakxmc14 278 7 residues residue NNS cord-293304-kakxmc14 278 8 , , , cord-293304-kakxmc14 278 9 especially especially RB cord-293304-kakxmc14 278 10 with with IN cord-293304-kakxmc14 278 11 Cys145 cys145 ADD cord-293304-kakxmc14 278 12 and and CC cord-293304-kakxmc14 278 13 His41 His41 NNP cord-293304-kakxmc14 278 14 , , , cord-293304-kakxmc14 278 15 which which WDT cord-293304-kakxmc14 278 16 are be VBP cord-293304-kakxmc14 278 17 the the DT cord-293304-kakxmc14 278 18 key key JJ cord-293304-kakxmc14 278 19 residues residue NNS cord-293304-kakxmc14 278 20 involved involve VBN cord-293304-kakxmc14 278 21 in in IN cord-293304-kakxmc14 278 22 catalytic catalytic JJ cord-293304-kakxmc14 278 23 diad diad VBN cord-293304-kakxmc14 278 24 for for IN cord-293304-kakxmc14 278 25 proteolysis proteolysis NN cord-293304-kakxmc14 278 26 in in IN cord-293304-kakxmc14 278 27 the the DT cord-293304-kakxmc14 278 28 enzyme enzyme NN cord-293304-kakxmc14 278 29 , , , cord-293304-kakxmc14 278 30 are be VBP cord-293304-kakxmc14 278 31 responsible responsible JJ cord-293304-kakxmc14 278 32 for for IN cord-293304-kakxmc14 278 33 the the DT cord-293304-kakxmc14 278 34 activity activity NN cord-293304-kakxmc14 278 35 of of IN cord-293304-kakxmc14 278 36 these these DT cord-293304-kakxmc14 278 37 compounds compound NNS cord-293304-kakxmc14 278 38 . . . cord-293304-kakxmc14 279 1 A a DT cord-293304-kakxmc14 279 2 regression regression NN cord-293304-kakxmc14 279 3 model model NN cord-293304-kakxmc14 279 4 with with IN cord-293304-kakxmc14 279 5 R R NNP cord-293304-kakxmc14 279 6 2 2 CD cord-293304-kakxmc14 279 7 = = SYM cord-293304-kakxmc14 279 8 0.9039 0.9039 CD cord-293304-kakxmc14 279 9 and and CC cord-293304-kakxmc14 279 10 Q Q NNP cord-293304-kakxmc14 279 11 2 2 CD cord-293304-kakxmc14 279 12 = = SYM cord-293304-kakxmc14 279 13 0.8848 0.8848 CD cord-293304-kakxmc14 279 14 was be VBD cord-293304-kakxmc14 279 15 developed develop VBN cord-293304-kakxmc14 279 16 correlating correlate VBG cord-293304-kakxmc14 279 17 binding bind VBG cord-293304-kakxmc14 279 18 energy energy NN cord-293304-kakxmc14 279 19 with with IN cord-293304-kakxmc14 279 20 the the DT cord-293304-kakxmc14 279 21 molecular molecular JJ cord-293304-kakxmc14 279 22 descriptors descriptor NNS cord-293304-kakxmc14 279 23 . . . cord-293304-kakxmc14 280 1 This this DT cord-293304-kakxmc14 280 2 model model NN cord-293304-kakxmc14 280 3 was be VBD cord-293304-kakxmc14 280 4 used use VBN cord-293304-kakxmc14 280 5 to to TO cord-293304-kakxmc14 280 6 predict predict VB cord-293304-kakxmc14 280 7 the the DT cord-293304-kakxmc14 280 8 binding bind VBG cord-293304-kakxmc14 280 9 energies energy NNS cord-293304-kakxmc14 280 10 of of IN cord-293304-kakxmc14 280 11 novel novel JJ cord-293304-kakxmc14 280 12 molecules molecule NNS cord-293304-kakxmc14 280 13 . . . cord-293304-kakxmc14 281 1 The the DT cord-293304-kakxmc14 281 2 primaquine primaquine NN cord-293304-kakxmc14 281 3 derivatives derivative NNS cord-293304-kakxmc14 281 4 and and CC cord-293304-kakxmc14 281 5 antiviral antiviral JJ cord-293304-kakxmc14 281 6 compounds compound NNS cord-293304-kakxmc14 281 7 obtained obtain VBN cord-293304-kakxmc14 281 8 from from IN cord-293304-kakxmc14 281 9 Asinex Asinex NNP cord-293304-kakxmc14 281 10 compound compound NN cord-293304-kakxmc14 281 11 library library NN cord-293304-kakxmc14 281 12 were be VBD cord-293304-kakxmc14 281 13 screened screen VBN cord-293304-kakxmc14 281 14 using use VBG cord-293304-kakxmc14 281 15 the the DT cord-293304-kakxmc14 281 16 regression regression NN cord-293304-kakxmc14 281 17 model model NN cord-293304-kakxmc14 281 18 , , , cord-293304-kakxmc14 281 19 and and CC cord-293304-kakxmc14 281 20 the the DT cord-293304-kakxmc14 281 21 hit hit NN cord-293304-kakxmc14 281 22 compounds compound NNS cord-293304-kakxmc14 281 23 thus thus RB cord-293304-kakxmc14 281 24 obtained obtain VBN cord-293304-kakxmc14 281 25 were be VBD cord-293304-kakxmc14 281 26 further further RB cord-293304-kakxmc14 281 27 docked dock VBN cord-293304-kakxmc14 281 28 with with IN cord-293304-kakxmc14 281 29 3CL 3cl CD cord-293304-kakxmc14 281 30 pro pro JJ cord-293304-kakxmc14 281 31 protein protein NN cord-293304-kakxmc14 281 32 . . . cord-293304-kakxmc14 282 1 They -PRON- PRP cord-293304-kakxmc14 282 2 showed show VBD cord-293304-kakxmc14 282 3 less less RBR cord-293304-kakxmc14 282 4 binding binding JJ cord-293304-kakxmc14 282 5 energies energy NNS cord-293304-kakxmc14 282 6 and and CC cord-293304-kakxmc14 282 7 proper proper JJ cord-293304-kakxmc14 282 8 interactions interaction NNS cord-293304-kakxmc14 282 9 with with IN cord-293304-kakxmc14 282 10 the the DT cord-293304-kakxmc14 282 11 target target NN cord-293304-kakxmc14 282 12 , , , cord-293304-kakxmc14 282 13 main main JJ cord-293304-kakxmc14 282 14 protease protease NN cord-293304-kakxmc14 282 15 ( ( -LRB- cord-293304-kakxmc14 282 16 3CL 3CL NNP cord-293304-kakxmc14 282 17 pro pro JJ cord-293304-kakxmc14 282 18 ) ) -RRB- cord-293304-kakxmc14 282 19 . . . cord-293304-kakxmc14 283 1 Molecular molecular JJ cord-293304-kakxmc14 283 2 dynamics dynamic NNS cord-293304-kakxmc14 283 3 studies study NNS cord-293304-kakxmc14 283 4 on on IN cord-293304-kakxmc14 283 5 these these DT cord-293304-kakxmc14 283 6 top top JJ cord-293304-kakxmc14 283 7 four four CD cord-293304-kakxmc14 283 8 compounds compound NNS cord-293304-kakxmc14 283 9 pq8 pq8 JJ cord-293304-kakxmc14 283 10 , , , cord-293304-kakxmc14 283 11 pq9 pq9 VBN cord-293304-kakxmc14 283 12 , , , cord-293304-kakxmc14 283 13 pq10 pq10 NNP cord-293304-kakxmc14 283 14 , , , cord-293304-kakxmc14 283 15 and and CC cord-293304-kakxmc14 283 16 A12 A12 NNP cord-293304-kakxmc14 283 17 revealed reveal VBD cord-293304-kakxmc14 283 18 their -PRON- PRP$ cord-293304-kakxmc14 283 19 binding bind VBG cord-293304-kakxmc14 283 20 stability stability NN cord-293304-kakxmc14 283 21 and and CC cord-293304-kakxmc14 283 22 conformational conformational JJ cord-293304-kakxmc14 283 23 changes change NNS cord-293304-kakxmc14 283 24 associated associate VBN cord-293304-kakxmc14 283 25 with with IN cord-293304-kakxmc14 283 26 the the DT cord-293304-kakxmc14 283 27 protein−ligand protein−ligand NNP cord-293304-kakxmc14 283 28 complexes complex NNS cord-293304-kakxmc14 283 29 . . . cord-293304-kakxmc14 284 1 Hence hence RB cord-293304-kakxmc14 284 2 , , , cord-293304-kakxmc14 284 3 these these DT cord-293304-kakxmc14 284 4 four four CD cord-293304-kakxmc14 284 5 compounds compound NNS cord-293304-kakxmc14 284 6 are be VBP cord-293304-kakxmc14 284 7 proposed propose VBN cord-293304-kakxmc14 284 8 for for IN cord-293304-kakxmc14 284 9 validation validation NN cord-293304-kakxmc14 284 10 and and CC cord-293304-kakxmc14 284 11 further further JJ cord-293304-kakxmc14 284 12 studies study NNS cord-293304-kakxmc14 284 13 as as IN cord-293304-kakxmc14 284 14 more more RBR cord-293304-kakxmc14 284 15 efficient efficient JJ cord-293304-kakxmc14 284 16 medication medication NN cord-293304-kakxmc14 284 17 for for IN cord-293304-kakxmc14 284 18 COVID-19 COVID-19 NNP cord-293304-kakxmc14 284 19 . . . cord-293304-kakxmc14 285 1 The the DT cord-293304-kakxmc14 285 2 Supporting Supporting NNP cord-293304-kakxmc14 285 3 Information Information NNP cord-293304-kakxmc14 285 4 is be VBZ cord-293304-kakxmc14 285 5 available available JJ cord-293304-kakxmc14 285 6 free free JJ cord-293304-kakxmc14 285 7 of of IN cord-293304-kakxmc14 285 8 charge charge NN cord-293304-kakxmc14 285 9 at at IN cord-293304-kakxmc14 285 10 https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00683 https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00683 NNP cord-293304-kakxmc14 285 11 . . . cord-293304-kakxmc14 286 1 Binding bind VBG cord-293304-kakxmc14 286 2 energy energy NN cord-293304-kakxmc14 286 3 obtained obtain VBN cord-293304-kakxmc14 286 4 for for IN cord-293304-kakxmc14 286 5 docking docking NN cord-293304-kakxmc14 286 6 CQ CQ NNP cord-293304-kakxmc14 286 7 and and CC cord-293304-kakxmc14 286 8 HCQ HCQ NNP cord-293304-kakxmc14 286 9 with with IN cord-293304-kakxmc14 286 10 3CL 3cl CD cord-293304-kakxmc14 286 11 pro pro JJ cord-293304-kakxmc14 286 12 and and CC cord-293304-kakxmc14 286 13 PfDHFR PfDHFR NNP cord-293304-kakxmc14 286 14 - - HYPH cord-293304-kakxmc14 286 15 TS ts NN cord-293304-kakxmc14 286 16 ; ; : cord-293304-kakxmc14 286 17 structure structure NN cord-293304-kakxmc14 286 18 of of IN cord-293304-kakxmc14 286 19 CQ CQ NNP cord-293304-kakxmc14 286 20 analogs analog NNS cord-293304-kakxmc14 286 21 with with IN cord-293304-kakxmc14 286 22 4-aminoquinoline 4-aminoquinoline CD cord-293304-kakxmc14 286 23 scaffold scaffold NN cord-293304-kakxmc14 286 24 ; ; : cord-293304-kakxmc14 286 25 structure structure NN cord-293304-kakxmc14 286 26 of of IN cord-293304-kakxmc14 286 27 chloroquine chloroquine NN cord-293304-kakxmc14 286 28 analogs analog NNS cord-293304-kakxmc14 286 29 with with IN cord-293304-kakxmc14 286 30 quinoline quinoline NN cord-293304-kakxmc14 286 31 scaffold scaffold NN cord-293304-kakxmc14 286 32 , , , cord-293304-kakxmc14 286 33 values value NNS cord-293304-kakxmc14 286 34 for for IN cord-293304-kakxmc14 286 35 internal internal JJ cord-293304-kakxmc14 286 36 and and CC cord-293304-kakxmc14 286 37 external external JJ cord-293304-kakxmc14 286 38 validation validation NN cord-293304-kakxmc14 286 39 criteria criterion NNS cord-293304-kakxmc14 286 40 , , , cord-293304-kakxmc14 286 41 binding bind VBG cord-293304-kakxmc14 286 42 energy energy NN cord-293304-kakxmc14 286 43 values value NNS cord-293304-kakxmc14 286 44 of of IN cord-293304-kakxmc14 286 45 training training NN cord-293304-kakxmc14 286 46 and and CC cord-293304-kakxmc14 286 47 test test NN cord-293304-kakxmc14 286 48 molecules molecule NNS cord-293304-kakxmc14 286 49 predicted predict VBN cord-293304-kakxmc14 286 50 with with IN cord-293304-kakxmc14 286 51 Model Model NNP cord-293304-kakxmc14 286 52 2 2 CD cord-293304-kakxmc14 286 53 ; ; : cord-293304-kakxmc14 286 54 domains domain NNS cord-293304-kakxmc14 286 55 and and CC cord-293304-kakxmc14 286 56 active active JJ cord-293304-kakxmc14 286 57 site site NN cord-293304-kakxmc14 286 58 of of IN cord-293304-kakxmc14 286 59 6LU7 6lu7 CD cord-293304-kakxmc14 286 60 bound bind VBN cord-293304-kakxmc14 286 61 with with IN cord-293304-kakxmc14 286 62 inhibitor inhibitor NN cord-293304-kakxmc14 286 63 N3 n3 NN cord-293304-kakxmc14 286 64 ; ; : cord-293304-kakxmc14 286 65 2D 2D NNP cord-293304-kakxmc14 286 66 interaction interaction NN cord-293304-kakxmc14 286 67 diagrams diagram NNS cord-293304-kakxmc14 286 68 of of IN cord-293304-kakxmc14 286 69 docked dock VBN cord-293304-kakxmc14 286 70 complexes complex NNS cord-293304-kakxmc14 286 71 of of IN cord-293304-kakxmc14 286 72 CQ CQ NNP cord-293304-kakxmc14 286 73 , , , cord-293304-kakxmc14 286 74 HCQ HCQ NNP cord-293304-kakxmc14 286 75 with with IN cord-293304-kakxmc14 286 76 3CL 3cl CD cord-293304-kakxmc14 286 77 pro pro JJ cord-293304-kakxmc14 286 78 ; ; VBD cord-293304-kakxmc14 286 79 docked dock VBN cord-293304-kakxmc14 286 80 poses pose NNS cord-293304-kakxmc14 286 81 of of IN cord-293304-kakxmc14 286 82 CQ CQ NNP cord-293304-kakxmc14 286 83 and and CC cord-293304-kakxmc14 286 84 HCQ HCQ NNP cord-293304-kakxmc14 286 85 in in IN cord-293304-kakxmc14 286 86 active active JJ cord-293304-kakxmc14 286 87 site site NN cord-293304-kakxmc14 286 88 of of IN cord-293304-kakxmc14 286 89 6LU7 6lu7 CD cord-293304-kakxmc14 286 90 ; ; : cord-293304-kakxmc14 286 91 2D 2D NNP cord-293304-kakxmc14 286 92 interaction interaction NN cord-293304-kakxmc14 286 93 diagrams diagram NNS cord-293304-kakxmc14 286 94 of of IN cord-293304-kakxmc14 286 95 29 29 CD cord-293304-kakxmc14 286 96 , , , cord-293304-kakxmc14 286 97 25 25 CD cord-293304-kakxmc14 286 98 , , , cord-293304-kakxmc14 286 99 22 22 CD cord-293304-kakxmc14 286 100 , , , cord-293304-kakxmc14 286 101 8 8 CD cord-293304-kakxmc14 286 102 , , , cord-293304-kakxmc14 286 103 24 24 CD cord-293304-kakxmc14 286 104 , , , cord-293304-kakxmc14 286 105 1 1 CD cord-293304-kakxmc14 286 106 , , , cord-293304-kakxmc14 286 107 and and CC cord-293304-kakxmc14 286 108 10 10 CD cord-293304-kakxmc14 286 109 with with IN cord-293304-kakxmc14 286 110 6LU7 6lu7 CD cord-293304-kakxmc14 286 111 ; ; : cord-293304-kakxmc14 286 112 structures structure NNS cord-293304-kakxmc14 286 113 of of IN cord-293304-kakxmc14 286 114 screened screen VBN cord-293304-kakxmc14 286 115 compounds compound NNS cord-293304-kakxmc14 286 116 from from IN cord-293304-kakxmc14 286 117 Asinex Asinex NNP cord-293304-kakxmc14 286 118 compound compound NN cord-293304-kakxmc14 286 119 library library NN cord-293304-kakxmc14 286 120 ; ; : cord-293304-kakxmc14 286 121 2D 2D NNP cord-293304-kakxmc14 286 122 interaction interaction NN cord-293304-kakxmc14 286 123 diagram diagram NN cord-293304-kakxmc14 286 124 of of IN cord-293304-kakxmc14 286 125 compounds compound NNS cord-293304-kakxmc14 286 126 having have VBG cord-293304-kakxmc14 286 127 unfavorable unfavorable JJ cord-293304-kakxmc14 286 128 interaction interaction NN cord-293304-kakxmc14 286 129 with with IN cord-293304-kakxmc14 286 130 target target NN cord-293304-kakxmc14 286 131 ; ; : cord-293304-kakxmc14 286 132 2D 2D NNP cord-293304-kakxmc14 286 133 interaction interaction NN cord-293304-kakxmc14 286 134 diagrams diagram NNS cord-293304-kakxmc14 286 135 of of IN cord-293304-kakxmc14 286 136 Asinex Asinex NNP cord-293304-kakxmc14 286 137 compounds compound NNS cord-293304-kakxmc14 286 138 with with IN cord-293304-kakxmc14 286 139 6LU7 6lu7 CD cord-293304-kakxmc14 286 140 protein protein NN cord-293304-kakxmc14 286 141 ( ( -LRB- cord-293304-kakxmc14 286 142 PDF PDF NNP cord-293304-kakxmc14 286 143 ) ) -RRB- cord-293304-kakxmc14 286 144 Research Research NNP cord-293304-kakxmc14 286 145 and and CC cord-293304-kakxmc14 286 146 Development Development NNP cord-293304-kakxmc14 286 147 on on IN cord-293304-kakxmc14 286 148 Therapeutic therapeutic JJ cord-293304-kakxmc14 286 149 Agents Agents NNPS cord-293304-kakxmc14 286 150 and and CC cord-293304-kakxmc14 286 151 Vaccines Vaccines NNPS cord-293304-kakxmc14 286 152 for for IN cord-293304-kakxmc14 286 153 COVID-19 covid-19 CD cord-293304-kakxmc14 286 154 and and CC cord-293304-kakxmc14 286 155 Related Related NNP cord-293304-kakxmc14 286 156 Human Human NNP cord-293304-kakxmc14 286 157 Coronavirus Coronavirus NNP cord-293304-kakxmc14 286 158 Diseases Diseases NNPS cord-293304-kakxmc14 286 159 Diagnosing diagnose VBG cord-293304-kakxmc14 286 160 COVID-19 covid-19 CD cord-293304-kakxmc14 286 161 : : : cord-293304-kakxmc14 286 162 The the DT cord-293304-kakxmc14 286 163 Disease Disease NNP cord-293304-kakxmc14 286 164 and and CC cord-293304-kakxmc14 286 165 Tools Tools NNPS cord-293304-kakxmc14 286 166 for for IN cord-293304-kakxmc14 286 167 Detection Detection NNP cord-293304-kakxmc14 286 168 A A NNP cord-293304-kakxmc14 286 169 Review Review NNP cord-293304-kakxmc14 286 170 of of IN cord-293304-kakxmc14 286 171 the the DT cord-293304-kakxmc14 286 172 2019 2019 CD cord-293304-kakxmc14 286 173 Novel Novel NNP cord-293304-kakxmc14 286 174 Coronavirus Coronavirus NNP cord-293304-kakxmc14 286 175 ( ( -LRB- cord-293304-kakxmc14 286 176 COVID-19 COVID-19 NNP cord-293304-kakxmc14 286 177 ) ) -RRB- cord-293304-kakxmc14 286 178 Based base VBN cord-293304-kakxmc14 286 179 on on IN cord-293304-kakxmc14 286 180 Current current JJ cord-293304-kakxmc14 286 181 Evidence evidence NN cord-293304-kakxmc14 286 182 Coronavirus Coronavirus NNP cord-293304-kakxmc14 286 183 Disease Disease NNP cord-293304-kakxmc14 286 184 2019 2019 CD cord-293304-kakxmc14 286 185 : : : cord-293304-kakxmc14 286 186 Coronaviruses Coronaviruses NNP cord-293304-kakxmc14 286 187 and and CC cord-293304-kakxmc14 286 188 Blood Blood NNP cord-293304-kakxmc14 286 189 Safety Safety NNP cord-293304-kakxmc14 286 190 Severe Severe NNP cord-293304-kakxmc14 286 191 Acute acute JJ cord-293304-kakxmc14 286 192 Respiratory Respiratory NNP cord-293304-kakxmc14 286 193 Syndrome Syndrome NNP cord-293304-kakxmc14 286 194 Coronavirus Coronavirus NNP cord-293304-kakxmc14 286 195 2 2 CD cord-293304-kakxmc14 286 196 ( ( -LRB- cord-293304-kakxmc14 286 197 SARS SARS NNP cord-293304-kakxmc14 286 198 - - HYPH cord-293304-kakxmc14 286 199 CoV-2 CoV-2 NNP cord-293304-kakxmc14 286 200 ) ) -RRB- cord-293304-kakxmc14 286 201 : : : cord-293304-kakxmc14 287 1 An an DT cord-293304-kakxmc14 287 2 Overview Overview NNP cord-293304-kakxmc14 287 3 of of IN cord-293304-kakxmc14 287 4 Viral Viral NNP cord-293304-kakxmc14 287 5 Structure Structure NNP cord-293304-kakxmc14 287 6 and and CC cord-293304-kakxmc14 287 7 Host Host NNP cord-293304-kakxmc14 287 8 Response Response NNP cord-293304-kakxmc14 287 9 COVID-19 COVID-19 NNP cord-293304-kakxmc14 287 10 ) ) -RRB- cord-293304-kakxmc14 287 11 Weekly Weekly NNP cord-293304-kakxmc14 287 12 Epidemiological Epidemiological NNP cord-293304-kakxmc14 287 13 Update Update NNP cord-293304-kakxmc14 287 14 and and CC cord-293304-kakxmc14 287 15 Weekly Weekly NNP cord-293304-kakxmc14 287 16 Operational Operational NNP cord-293304-kakxmc14 287 17 Update Update NNP cord-293304-kakxmc14 287 18 ; ; : cord-293304-kakxmc14 287 19 WHO who WP cord-293304-kakxmc14 287 20 Potential Potential NNP cord-293304-kakxmc14 287 21 Interventions Interventions NNPS cord-293304-kakxmc14 287 22 for for IN cord-293304-kakxmc14 287 23 Novel Novel NNP cord-293304-kakxmc14 287 24 Coronavirus Coronavirus NNP cord-293304-kakxmc14 287 25 in in IN cord-293304-kakxmc14 287 26 China China NNP cord-293304-kakxmc14 287 27 : : : cord-293304-kakxmc14 288 1 A a DT cord-293304-kakxmc14 288 2 Systematic Systematic NNP cord-293304-kakxmc14 288 3 Review Review NNP cord-293304-kakxmc14 288 4 Structural Structural NNP cord-293304-kakxmc14 288 5 Basis Basis NNP cord-293304-kakxmc14 288 6 of of IN cord-293304-kakxmc14 288 7 SARS SARS NNP cord-293304-kakxmc14 288 8 - - HYPH cord-293304-kakxmc14 288 9 CoV-2 CoV-2 NNP cord-293304-kakxmc14 288 10 3CLpro 3clpro CD cord-293304-kakxmc14 288 11 and and CC cord-293304-kakxmc14 288 12 Anti Anti NNP cord-293304-kakxmc14 288 13 - - NNP cord-293304-kakxmc14 288 14 COVID-19 COVID-19 NNP cord-293304-kakxmc14 288 15 Drug Drug NNP cord-293304-kakxmc14 288 16 Discovery Discovery NNP cord-293304-kakxmc14 288 17 from from IN cord-293304-kakxmc14 288 18 Medicinal Medicinal NNP cord-293304-kakxmc14 288 19 Plants Plants NNPS cord-293304-kakxmc14 289 1 An an DT cord-293304-kakxmc14 289 2 Overview Overview NNP cord-293304-kakxmc14 289 3 of of IN cord-293304-kakxmc14 289 4 Severe severe JJ cord-293304-kakxmc14 289 5 Acute acute JJ cord-293304-kakxmc14 289 6 Respiratory Respiratory NNP cord-293304-kakxmc14 289 7 Syndrome Syndrome NNP cord-293304-kakxmc14 289 8 - - HYPH cord-293304-kakxmc14 289 9 Coronavirus Coronavirus NNP cord-293304-kakxmc14 289 10 ( ( -LRB- cord-293304-kakxmc14 289 11 SARS SARS NNP cord-293304-kakxmc14 289 12 - - HYPH cord-293304-kakxmc14 289 13 CoV CoV NNP cord-293304-kakxmc14 289 14 ) ) -RRB- cord-293304-kakxmc14 289 15 3CL 3CL NNP cord-293304-kakxmc14 289 16 Protease Protease NNP cord-293304-kakxmc14 289 17 Inhibitors Inhibitors NNP cord-293304-kakxmc14 289 18 : : : cord-293304-kakxmc14 289 19 Peptidomimetics Peptidomimetics NNP cord-293304-kakxmc14 289 20 and and CC cord-293304-kakxmc14 289 21 Small Small NNP cord-293304-kakxmc14 289 22 Molecule Molecule NNP cord-293304-kakxmc14 289 23 Chemotherapy Chemotherapy NNP cord-293304-kakxmc14 289 24 Department Department NNP cord-293304-kakxmc14 289 25 of of IN cord-293304-kakxmc14 289 26 Medicinal Medicinal NNP cord-293304-kakxmc14 289 27 Chemistry Chemistry NNP cord-293304-kakxmc14 289 28 , , , cord-293304-kakxmc14 289 29 Tokyo Tokyo NNP cord-293304-kakxmc14 289 30 University University NNP cord-293304-kakxmc14 289 31 of of IN cord-293304-kakxmc14 289 32 Pharmacy Pharmacy NNP cord-293304-kakxmc14 289 33 and and CC cord-293304-kakxmc14 289 34 Life Life NNP cord-293304-kakxmc14 289 35 Sciences Sciences NNPS cord-293304-kakxmc14 289 36 Structure Structure NNP cord-293304-kakxmc14 289 37 of of IN cord-293304-kakxmc14 289 38 Mpro Mpro NNP cord-293304-kakxmc14 289 39 from from IN cord-293304-kakxmc14 289 40 COVID-19 COVID-19 NNP cord-293304-kakxmc14 289 41 Virus Virus NNP cord-293304-kakxmc14 289 42 and and CC cord-293304-kakxmc14 289 43 Discovery Discovery NNP cord-293304-kakxmc14 289 44 of of IN cord-293304-kakxmc14 289 45 Its -PRON- PRP$ cord-293304-kakxmc14 289 46 Inhibitors Inhibitors NNP cord-293304-kakxmc14 289 47 Distinct distinct JJ cord-293304-kakxmc14 289 48 Roles role NNS cord-293304-kakxmc14 289 49 of of IN cord-293304-kakxmc14 289 50 Catalytic Catalytic NNP cord-293304-kakxmc14 289 51 Cysteine Cysteine NNP cord-293304-kakxmc14 289 52 and and CC cord-293304-kakxmc14 289 53 Histidine Histidine NNP cord-293304-kakxmc14 289 54 in in IN cord-293304-kakxmc14 289 55 the the DT cord-293304-kakxmc14 289 56 Protease Protease NNP cord-293304-kakxmc14 289 57 and and CC cord-293304-kakxmc14 289 58 Ligase Ligase NNP cord-293304-kakxmc14 289 59 Mechanisms Mechanisms NNPS cord-293304-kakxmc14 289 60 of of IN cord-293304-kakxmc14 289 61 Human Human NNP cord-293304-kakxmc14 289 62 Legumain Legumain NNP cord-293304-kakxmc14 290 1 As as IN cord-293304-kakxmc14 290 2 Revealed reveal VBN cord-293304-kakxmc14 290 3 by by IN cord-293304-kakxmc14 290 4 DFT DFT NNP cord-293304-kakxmc14 290 5 - - HYPH cord-293304-kakxmc14 290 6 Based base VBN cord-293304-kakxmc14 290 7 QM QM NNP cord-293304-kakxmc14 290 8 / / SYM cord-293304-kakxmc14 290 9 MM MM NNP cord-293304-kakxmc14 290 10 Simulations Simulations NNPS cord-293304-kakxmc14 290 11 Ongoing Ongoing NNP cord-293304-kakxmc14 290 12 Clinical Clinical NNP cord-293304-kakxmc14 290 13 Trials Trials NNPS cord-293304-kakxmc14 290 14 for for IN cord-293304-kakxmc14 290 15 the the DT cord-293304-kakxmc14 290 16 Management Management NNP cord-293304-kakxmc14 290 17 of of IN cord-293304-kakxmc14 290 18 the the DT cord-293304-kakxmc14 290 19 COVID-19 COVID-19 NNP cord-293304-kakxmc14 290 20 Pandemic Pandemic NNP cord-293304-kakxmc14 290 21 Chloroquine Chloroquine NNP cord-293304-kakxmc14 290 22 and and CC cord-293304-kakxmc14 290 23 Hydroxychloroquine Hydroxychloroquine NNP cord-293304-kakxmc14 290 24 in in IN cord-293304-kakxmc14 290 25 the the DT cord-293304-kakxmc14 290 26 Treatment Treatment NNP cord-293304-kakxmc14 290 27 of of IN cord-293304-kakxmc14 290 28 COVID-19 COVID-19 NNP cord-293304-kakxmc14 290 29 with with IN cord-293304-kakxmc14 290 30 or or CC cord-293304-kakxmc14 290 31 without without IN cord-293304-kakxmc14 290 32 Diabetes diabetes NN cord-293304-kakxmc14 290 33 : : : cord-293304-kakxmc14 291 1 A a DT cord-293304-kakxmc14 291 2 Systematic Systematic NNP cord-293304-kakxmc14 291 3 Search Search NNP cord-293304-kakxmc14 291 4 and and CC cord-293304-kakxmc14 291 5 a a DT cord-293304-kakxmc14 291 6 Narrative Narrative NNP cord-293304-kakxmc14 291 7 Review Review NNP cord-293304-kakxmc14 291 8 with with IN cord-293304-kakxmc14 291 9 a a DT cord-293304-kakxmc14 291 10 Special Special NNP cord-293304-kakxmc14 291 11 Reference reference NN cord-293304-kakxmc14 291 12 to to IN cord-293304-kakxmc14 291 13 India India NNP cord-293304-kakxmc14 291 14 and and CC cord-293304-kakxmc14 291 15 Other other JJ cord-293304-kakxmc14 291 16 Developing Developing NNP cord-293304-kakxmc14 291 17 Countries country NNS cord-293304-kakxmc14 292 1 Review review NN cord-293304-kakxmc14 292 2 : : : cord-293304-kakxmc14 293 1 Hydroxychloroquine Hydroxychloroquine NNP cord-293304-kakxmc14 293 2 and and CC cord-293304-kakxmc14 293 3 Chloroquine Chloroquine NNP cord-293304-kakxmc14 293 4 for for IN cord-293304-kakxmc14 293 5 Treatment Treatment NNP cord-293304-kakxmc14 293 6 of of IN cord-293304-kakxmc14 293 7 SARS SARS NNP cord-293304-kakxmc14 293 8 - - HYPH cord-293304-kakxmc14 293 9 CoV-2 CoV-2 NNP cord-293304-kakxmc14 293 10 ( ( -LRB- cord-293304-kakxmc14 293 11 COVID-19 covid-19 VB cord-293304-kakxmc14 293 12 ) ) -RRB- cord-293304-kakxmc14 293 13 New New NNP cord-293304-kakxmc14 293 14 Insights Insights NNPS cord-293304-kakxmc14 293 15 on on IN cord-293304-kakxmc14 293 16 the the DT cord-293304-kakxmc14 293 17 Antiviral Antiviral NNP cord-293304-kakxmc14 293 18 Effects effect NNS cord-293304-kakxmc14 293 19 of of IN cord-293304-kakxmc14 293 20 Chloroquine Chloroquine NNP cord-293304-kakxmc14 293 21 against against IN cord-293304-kakxmc14 293 22 Coronavirus Coronavirus NNP cord-293304-kakxmc14 293 23 : : : cord-293304-kakxmc14 293 24 What what WP cord-293304-kakxmc14 293 25 to to TO cord-293304-kakxmc14 293 26 Expect expect VB cord-293304-kakxmc14 293 27 for for IN cord-293304-kakxmc14 293 28 COVID-19 covid-19 NN cord-293304-kakxmc14 293 29 ? ? . cord-293304-kakxmc14 294 1 Recycling recycling NN cord-293304-kakxmc14 294 2 of of IN cord-293304-kakxmc14 294 3 Chloroquine Chloroquine NNP cord-293304-kakxmc14 294 4 and and CC cord-293304-kakxmc14 294 5 Its -PRON- PRP$ cord-293304-kakxmc14 294 6 Hydroxyl Hydroxyl NNP cord-293304-kakxmc14 294 7 Analogue Analogue NNP cord-293304-kakxmc14 294 8 to to TO cord-293304-kakxmc14 294 9 Face face VB cord-293304-kakxmc14 294 10 Bacterial bacterial JJ cord-293304-kakxmc14 294 11 , , , cord-293304-kakxmc14 294 12 Fungal fungal JJ cord-293304-kakxmc14 294 13 and and CC cord-293304-kakxmc14 294 14 Viral Viral NNP cord-293304-kakxmc14 294 15 Infections Infections NNPS cord-293304-kakxmc14 294 16 in in IN cord-293304-kakxmc14 294 17 the the DT cord-293304-kakxmc14 294 18 21st 21st JJ cord-293304-kakxmc14 294 19 Century Century NNP cord-293304-kakxmc14 294 20 Hydroxychloroquine Hydroxychloroquine NNP cord-293304-kakxmc14 294 21 , , , cord-293304-kakxmc14 294 22 a a DT cord-293304-kakxmc14 294 23 Less less RBR cord-293304-kakxmc14 294 24 Toxic toxic JJ cord-293304-kakxmc14 294 25 Derivative derivative NN cord-293304-kakxmc14 294 26 of of IN cord-293304-kakxmc14 294 27 Chloroquine Chloroquine NNP cord-293304-kakxmc14 294 28 , , , cord-293304-kakxmc14 294 29 Is be VBZ cord-293304-kakxmc14 294 30 Effective effective JJ cord-293304-kakxmc14 294 31 in in IN cord-293304-kakxmc14 294 32 Inhibiting inhibit VBG cord-293304-kakxmc14 294 33 SARS SARS NNP cord-293304-kakxmc14 294 34 - - HYPH cord-293304-kakxmc14 294 35 CoV-2 CoV-2 NNP cord-293304-kakxmc14 294 36 Infection infection NN cord-293304-kakxmc14 294 37 in in IN cord-293304-kakxmc14 294 38 Vitro Vitro NNP cord-293304-kakxmc14 294 39 Introducing introduce VBG cord-293304-kakxmc14 294 40 New New NNP cord-293304-kakxmc14 294 41 Antimalarial Antimalarial NNP cord-293304-kakxmc14 294 42 Analogues Analogues NNP cord-293304-kakxmc14 294 43 of of IN cord-293304-kakxmc14 294 44 Chloroquine Chloroquine NNP cord-293304-kakxmc14 294 45 and and CC cord-293304-kakxmc14 294 46 Amodiaquine Amodiaquine NNP cord-293304-kakxmc14 294 47 : : : cord-293304-kakxmc14 295 1 A a DT cord-293304-kakxmc14 295 2 Narrative Narrative NNP cord-293304-kakxmc14 295 3 Review Review NNP cord-293304-kakxmc14 295 4 . . . cord-293304-kakxmc14 296 1 Iran Iran NNP cord-293304-kakxmc14 296 2 Chloroquine Chloroquine NNP cord-293304-kakxmc14 296 3 Analogs Analogs NNP cord-293304-kakxmc14 296 4 as as IN cord-293304-kakxmc14 296 5 Antimalarial Antimalarial NNP cord-293304-kakxmc14 296 6 Candidates candidate NNS cord-293304-kakxmc14 296 7 with with IN cord-293304-kakxmc14 296 8 Potent potent JJ cord-293304-kakxmc14 296 9 in in IN cord-293304-kakxmc14 296 10 Vitro Vitro NNP cord-293304-kakxmc14 296 11 and and CC cord-293304-kakxmc14 296 12 in in IN cord-293304-kakxmc14 296 13 Vivo Vivo NNP cord-293304-kakxmc14 296 14 Activity Activity NNP cord-293304-kakxmc14 296 15 Chloroquine Chloroquine NNP cord-293304-kakxmc14 296 16 Analogues Analogues NNPS cord-293304-kakxmc14 296 17 in in IN cord-293304-kakxmc14 296 18 Drug Drug NNP cord-293304-kakxmc14 296 19 Discovery Discovery NNP cord-293304-kakxmc14 296 20 : : : cord-293304-kakxmc14 297 1 New New NNP cord-293304-kakxmc14 297 2 Directions direction NNS cord-293304-kakxmc14 297 3 of of IN cord-293304-kakxmc14 297 4 Uses Uses NNP cord-293304-kakxmc14 297 5 , , , cord-293304-kakxmc14 297 6 Mechanisms Mechanisms NNPS cord-293304-kakxmc14 297 7 of of IN cord-293304-kakxmc14 297 8 Actions Actions NNPS cord-293304-kakxmc14 297 9 and and CC cord-293304-kakxmc14 297 10 Toxic toxic JJ cord-293304-kakxmc14 297 11 Manifestations manifestation NNS cord-293304-kakxmc14 297 12 from from IN cord-293304-kakxmc14 297 13 Malaria Malaria NNP cord-293304-kakxmc14 297 14 to to IN cord-293304-kakxmc14 297 15 Multifarious multifarious JJ cord-293304-kakxmc14 297 16 Diseases Diseases NNPS cord-293304-kakxmc14 297 17 Update update NN cord-293304-kakxmc14 297 18 : : : cord-293304-kakxmc14 297 19 Improved Improved NNP cord-293304-kakxmc14 297 20 Access Access NNP cord-293304-kakxmc14 297 21 to to IN cord-293304-kakxmc14 297 22 Chemical Chemical NNP cord-293304-kakxmc14 297 23 Data Data NNP cord-293304-kakxmc14 297 24 Avogadro Avogadro NNP cord-293304-kakxmc14 297 25 : : : cord-293304-kakxmc14 297 26 An an DT cord-293304-kakxmc14 297 27 Advanced advanced JJ cord-293304-kakxmc14 297 28 Semantic Semantic NNP cord-293304-kakxmc14 297 29 Chemical Chemical NNP cord-293304-kakxmc14 297 30 Editor Editor NNP cord-293304-kakxmc14 297 31 , , , cord-293304-kakxmc14 297 32 Visualization Visualization NNP cord-293304-kakxmc14 297 33 , , , cord-293304-kakxmc14 297 34 and and CC cord-293304-kakxmc14 297 35 Analysis Analysis NNP cord-293304-kakxmc14 297 36 Platform Platform NNP cord-293304-kakxmc14 297 37 Avogadro Avogadro NNP cord-293304-kakxmc14 297 38 : : : cord-293304-kakxmc14 298 1 An an DT cord-293304-kakxmc14 298 2 Open open JJ cord-293304-kakxmc14 298 3 - - HYPH cord-293304-kakxmc14 298 4 Source source NN cord-293304-kakxmc14 298 5 Molecular Molecular NNP cord-293304-kakxmc14 298 6 Builder Builder NNP cord-293304-kakxmc14 298 7 and and CC cord-293304-kakxmc14 298 8 Visualization Visualization NNP cord-293304-kakxmc14 298 9 Tool Tool NNP cord-293304-kakxmc14 298 10 . . . cord-293304-kakxmc14 299 1 Version version NN cord-293304-kakxmc14 299 2 1.XX 1.xx CD cord-293304-kakxmc14 299 3 ; ; : cord-293304-kakxmc14 299 4 Avogadro Avogadro NNP cord-293304-kakxmc14 299 5 Chemistry Chemistry NNP cord-293304-kakxmc14 300 1 The the DT cord-293304-kakxmc14 301 1 Protein Protein NNP cord-293304-kakxmc14 301 2 Data Data NNP cord-293304-kakxmc14 301 3 Bank Bank NNP cord-293304-kakxmc14 301 4 An An NNP cord-293304-kakxmc14 301 5 Environment Environment NNP cord-293304-kakxmc14 301 6 for for IN cord-293304-kakxmc14 301 7 Comparative Comparative NNP cord-293304-kakxmc14 301 8 Protein Protein NNP cord-293304-kakxmc14 301 9 Modeling Modeling NNP cord-293304-kakxmc14 301 10 . . . cord-293304-kakxmc14 302 1 Electrophoresis Electrophoresis NNP cord-293304-kakxmc14 302 2 Software Software NNP cord-293304-kakxmc14 302 3 News News NNP cord-293304-kakxmc14 302 4 and and CC cord-293304-kakxmc14 302 5 Updates Updates NNPS cord-293304-kakxmc14 302 6 AutoDock4 AutoDock4 NNP cord-293304-kakxmc14 302 7 and and CC cord-293304-kakxmc14 302 8 AutoDockTools4 autodocktools4 NN cord-293304-kakxmc14 302 9 : : : cord-293304-kakxmc14 303 1 Automated automate VBN cord-293304-kakxmc14 303 2 Docking docking NN cord-293304-kakxmc14 303 3 with with IN cord-293304-kakxmc14 303 4 Selective selective JJ cord-293304-kakxmc14 303 5 Receptor receptor NN cord-293304-kakxmc14 303 6 Flexibility flexibility NN cord-293304-kakxmc14 304 1 A a DT cord-293304-kakxmc14 304 2 New New NNP cord-293304-kakxmc14 304 3 Software Software NNP cord-293304-kakxmc14 304 4 for for IN cord-293304-kakxmc14 304 5 the the DT cord-293304-kakxmc14 304 6 Development Development NNP cord-293304-kakxmc14 304 7 , , , cord-293304-kakxmc14 304 8 Analysis Analysis NNP cord-293304-kakxmc14 304 9 , , , cord-293304-kakxmc14 304 10 and and CC cord-293304-kakxmc14 304 11 Validation Validation NNP cord-293304-kakxmc14 304 12 of of IN cord-293304-kakxmc14 304 13 QSAR QSAR NNP cord-293304-kakxmc14 304 14 MLR MLR NNP cord-293304-kakxmc14 304 15 Models model NNS cord-293304-kakxmc14 305 1 Insubria Insubria NNP cord-293304-kakxmc14 305 2 Datasets Datasets NNP cord-293304-kakxmc14 305 3 and and CC cord-293304-kakxmc14 305 4 New New NNP cord-293304-kakxmc14 305 5 QSAR QSAR NNP cord-293304-kakxmc14 305 6 / / SYM cord-293304-kakxmc14 305 7 QSPR QSPR NNP cord-293304-kakxmc14 305 8 Models Models NNPS cord-293304-kakxmc14 305 9 for for IN cord-293304-kakxmc14 305 10 Environmental environmental JJ cord-293304-kakxmc14 305 11 Pollutants Pollutants NNPS cord-293304-kakxmc14 305 12 in in IN cord-293304-kakxmc14 305 13 QSARINS QSARINS NNP cord-293304-kakxmc14 305 14 PaDEL PaDEL NNP cord-293304-kakxmc14 305 15 - - HYPH cord-293304-kakxmc14 305 16 Descriptor Descriptor NNP cord-293304-kakxmc14 305 17 : : : cord-293304-kakxmc14 305 18 An an DT cord-293304-kakxmc14 305 19 Open open JJ cord-293304-kakxmc14 305 20 Source source NN cord-293304-kakxmc14 305 21 Software software NN cord-293304-kakxmc14 305 22 to to TO cord-293304-kakxmc14 305 23 Calculate calculate VB cord-293304-kakxmc14 305 24 Molecular molecular JJ cord-293304-kakxmc14 305 25 Descriptors descriptor NNS cord-293304-kakxmc14 305 26 and and CC cord-293304-kakxmc14 305 27 Fingerprints Fingerprints NNP cord-293304-kakxmc14 305 28 Comparative Comparative NNP cord-293304-kakxmc14 305 29 QSAR QSAR NNP cord-293304-kakxmc14 305 30 Model Model NNP cord-293304-kakxmc14 305 31 Generation Generation NNP cord-293304-kakxmc14 306 1 Using use VBG cord-293304-kakxmc14 306 2 Pyrazole Pyrazole NNP cord-293304-kakxmc14 306 3 Derivatives Derivatives NNP cord-293304-kakxmc14 306 4 for for IN cord-293304-kakxmc14 306 5 Screening screen VBG cord-293304-kakxmc14 306 6 Janus Janus NNP cord-293304-kakxmc14 307 1 Kinase-1 Kinase-1 NNP cord-293304-kakxmc14 308 1 Inhibitors Inhibitors NNP cord-293304-kakxmc14 308 2 Quantitative Quantitative NNP cord-293304-kakxmc14 308 3 Structure Structure NNP cord-293304-kakxmc14 308 4 Activity Activity NNP cord-293304-kakxmc14 308 5 Relationship Relationship NNP cord-293304-kakxmc14 308 6 Study Study NNP cord-293304-kakxmc14 308 7 of of IN cord-293304-kakxmc14 308 8 Anticonvulsant Anticonvulsant NNP cord-293304-kakxmc14 308 9 Activity Activity NNP cord-293304-kakxmc14 308 10 of of IN cord-293304-kakxmc14 308 11 α α NN cord-293304-kakxmc14 308 12 _ _ NN cord-293304-kakxmc14 308 13 Substituted Substituted NNP cord-293304-kakxmc14 308 14 Acetamido Acetamido NNP cord-293304-kakxmc14 308 15 - - HYPH cord-293304-kakxmc14 308 16 N N NNP cord-293304-kakxmc14 308 17 - - HYPH cord-293304-kakxmc14 308 18 Benzylacetamide Benzylacetamide NNP cord-293304-kakxmc14 308 19 Derivatives Derivatives NNP cord-293304-kakxmc14 308 20 Scalable Scalable NNP cord-293304-kakxmc14 308 21 Molecular Molecular NNP cord-293304-kakxmc14 308 22 Dynamics Dynamics NNPS cord-293304-kakxmc14 308 23 on on IN cord-293304-kakxmc14 308 24 CPU cpu NN cord-293304-kakxmc14 308 25 and and CC cord-293304-kakxmc14 308 26 GPU GPU NNP cord-293304-kakxmc14 308 27 Architectures architecture NNS cord-293304-kakxmc14 308 28 with with IN cord-293304-kakxmc14 308 29 NAMD NAMD NNP cord-293304-kakxmc14 308 30 Scalable Scalable NNP cord-293304-kakxmc14 308 31 Molecular Molecular NNP cord-293304-kakxmc14 308 32 Dynamics Dynamics NNPS cord-293304-kakxmc14 308 33 on on IN cord-293304-kakxmc14 308 34 CPU cpu NN cord-293304-kakxmc14 308 35 and and CC cord-293304-kakxmc14 308 36 GPU GPU NNP cord-293304-kakxmc14 308 37 Architectures architecture NNS cord-293304-kakxmc14 308 38 with with IN cord-293304-kakxmc14 308 39 NAMD NAMD NNP cord-293304-kakxmc14 308 40 Ligand Ligand NNP cord-293304-kakxmc14 308 41 Reader Reader NNP cord-293304-kakxmc14 308 42 & & CC cord-293304-kakxmc14 308 43 Modeler Modeler NNP cord-293304-kakxmc14 308 44 for for IN cord-293304-kakxmc14 308 45 CHARMM CHARMM NNP cord-293304-kakxmc14 308 46 Force Force NNP cord-293304-kakxmc14 308 47 Field Field NNP cord-293304-kakxmc14 308 48 Generation Generation NNP cord-293304-kakxmc14 308 49 of of IN cord-293304-kakxmc14 308 50 Small small JJ cord-293304-kakxmc14 308 51 Molecules molecule NNS cord-293304-kakxmc14 308 52 VMD VMD NNP cord-293304-kakxmc14 308 53 : : : cord-293304-kakxmc14 308 54 Visual Visual NNP cord-293304-kakxmc14 308 55 Molecular Molecular NNP cord-293304-kakxmc14 308 56 Dynamics Dynamics NNPS cord-293304-kakxmc14 308 57 Research Research NNP cord-293304-kakxmc14 308 58 Paper Paper NNP cord-293304-kakxmc14 308 59 State State NNP cord-293304-kakxmc14 308 60 - - HYPH cord-293304-kakxmc14 308 61 of of IN cord-293304-kakxmc14 308 62 - - HYPH cord-293304-kakxmc14 308 63 the the DT cord-293304-kakxmc14 308 64 - - HYPH cord-293304-kakxmc14 308 65 Art art NN cord-293304-kakxmc14 308 66 Tools tool NNS cord-293304-kakxmc14 308 67 Unveil unveil VBP cord-293304-kakxmc14 308 68 Potent potent JJ cord-293304-kakxmc14 308 69 Drug drug NN cord-293304-kakxmc14 308 70 Targets target NNS cord-293304-kakxmc14 308 71 amongst amongst IN cord-293304-kakxmc14 308 72 Clinically clinically RB cord-293304-kakxmc14 308 73 Approved approve VBN cord-293304-kakxmc14 308 74 Drugs drug NNS cord-293304-kakxmc14 308 75 to to IN cord-293304-kakxmc14 308 76 Inhibit Inhibit NNP cord-293304-kakxmc14 308 77 Helicase Helicase NNP cord-293304-kakxmc14 308 78 in in IN cord-293304-kakxmc14 308 79 SARS SARS NNP cord-293304-kakxmc14 308 80 - - HYPH cord-293304-kakxmc14 308 81 CoV-2 CoV-2 NNP cord-293304-kakxmc14 309 1 Physicochemical Physicochemical NNP cord-293304-kakxmc14 309 2 Characterization Characterization NNP cord-293304-kakxmc14 309 3 and and CC cord-293304-kakxmc14 309 4 Functional Functional NNP cord-293304-kakxmc14 309 5 Analysis Analysis NNP cord-293304-kakxmc14 309 6 of of IN cord-293304-kakxmc14 309 7 Some some DT cord-293304-kakxmc14 309 8 Snake snake NN cord-293304-kakxmc14 309 9 Venom venom NN cord-293304-kakxmc14 309 10 Toxin toxin NN cord-293304-kakxmc14 309 11 Proteins protein NNS cord-293304-kakxmc14 309 12 and and CC cord-293304-kakxmc14 309 13 Related relate VBN cord-293304-kakxmc14 309 14 Non Non NNP cord-293304-kakxmc14 309 15 - - JJ cord-293304-kakxmc14 309 16 Toxin toxin JJ cord-293304-kakxmc14 309 17 Proteins protein NNS cord-293304-kakxmc14 309 18 of of IN cord-293304-kakxmc14 309 19 Other Other NNP cord-293304-kakxmc14 309 20 Chordates Chordates NNP cord-293304-kakxmc14 309 21 Abstract Abstract NNP cord-293304-kakxmc14 309 22 : : : cord-293304-kakxmc14 310 1 Background background NN cord-293304-kakxmc14 310 2 : : : cord-293304-kakxmc14 311 1 Bioinformation Bioinformation NNP cord-293304-kakxmc14 311 2 Genetic Genetic NNP cord-293304-kakxmc14 311 3 Involvement Involvement NNP cord-293304-kakxmc14 311 4 of of IN cord-293304-kakxmc14 311 5 Interleukin Interleukin NNP cord-293304-kakxmc14 311 6 4 4 CD cord-293304-kakxmc14 311 7 for for IN cord-293304-kakxmc14 311 8 Asthma Asthma NNP cord-293304-kakxmc14 311 9 and and CC cord-293304-kakxmc14 311 10 Identification Identification NNP cord-293304-kakxmc14 311 11 of of IN cord-293304-kakxmc14 311 12 Potential potential JJ cord-293304-kakxmc14 311 13 Phytochemical Phytochemical NNP cord-293304-kakxmc14 311 14 Scaffold Scaffold NNP cord-293304-kakxmc14 311 15 Through through IN cord-293304-kakxmc14 311 16 Molecular Molecular NNP cord-293304-kakxmc14 311 17 Docking Docking NNP cord-293304-kakxmc14 311 18 Studies Studies NNPS cord-293304-kakxmc14 311 19 Understanding understand VBG cord-293304-kakxmc14 311 20 the the DT cord-293304-kakxmc14 311 21 Relationship relationship NN cord-293304-kakxmc14 311 22 between between IN cord-293304-kakxmc14 311 23 the the DT cord-293304-kakxmc14 311 24 Primary Primary NNP cord-293304-kakxmc14 311 25 Structure Structure NNP cord-293304-kakxmc14 311 26 of of IN cord-293304-kakxmc14 311 27 Proteins Proteins NNPS cord-293304-kakxmc14 311 28 and and CC cord-293304-kakxmc14 311 29 Its -PRON- PRP$ cord-293304-kakxmc14 311 30 Propensity Propensity NNP cord-293304-kakxmc14 311 31 to to TO cord-293304-kakxmc14 311 32 Be be VB cord-293304-kakxmc14 311 33 Soluble soluble JJ cord-293304-kakxmc14 311 34 on on IN cord-293304-kakxmc14 311 35 Overexpression Overexpression NNP cord-293304-kakxmc14 311 36 in in IN cord-293304-kakxmc14 311 37 Escherichia Escherichia NNP cord-293304-kakxmc14 311 38 Coli Coli NNP cord-293304-kakxmc14 311 39 Structure Structure NNP cord-293304-kakxmc14 311 40 of of IN cord-293304-kakxmc14 311 41 Mpro Mpro NNP cord-293304-kakxmc14 311 42 from from IN cord-293304-kakxmc14 311 43 COVID-19 COVID-19 NNP cord-293304-kakxmc14 311 44 Virus Virus NNP cord-293304-kakxmc14 311 45 and and CC cord-293304-kakxmc14 311 46 Discovery Discovery NNP cord-293304-kakxmc14 311 47 of of IN cord-293304-kakxmc14 311 48 Its -PRON- PRP$ cord-293304-kakxmc14 311 49 Inhibitors Inhibitors NNP cord-293304-kakxmc14 311 50 Structure Structure NNP cord-293304-kakxmc14 312 1 -Activity -Activity NNP cord-293304-kakxmc14 312 2 Relationship Relationship NNP cord-293304-kakxmc14 312 3 and and CC cord-293304-kakxmc14 312 4 Comparative Comparative NNP cord-293304-kakxmc14 312 5 Docking Docking NNP cord-293304-kakxmc14 312 6 Studies Studies NNPS cord-293304-kakxmc14 312 7 for for IN cord-293304-kakxmc14 312 8 Cycloguanil Cycloguanil NNP cord-293304-kakxmc14 312 9 Analogs Analogs NNP cord-293304-kakxmc14 312 10 as as IN cord-293304-kakxmc14 312 11 PfDHFR PfDHFR NNP cord-293304-kakxmc14 312 12 - - HYPH cord-293304-kakxmc14 312 13 TS TS NNP cord-293304-kakxmc14 312 14 Inhibitors Inhibitors NNP cord-293304-kakxmc14 312 15 Chalcone Chalcone NNP cord-293304-kakxmc14 312 16 Analogue Analogue NNP cord-293304-kakxmc14 312 17 as as IN cord-293304-kakxmc14 312 18 Potent Potent NNP cord-293304-kakxmc14 312 19 Anti anti JJ cord-293304-kakxmc14 312 20 - - JJ cord-293304-kakxmc14 312 21 Malarial malarial JJ cord-293304-kakxmc14 312 22 Compounds compound NNS cord-293304-kakxmc14 312 23 against against IN cord-293304-kakxmc14 312 24 Plasmodium Plasmodium NNP cord-293304-kakxmc14 312 25 Falciparum Falciparum NNP cord-293304-kakxmc14 312 26 : : : cord-293304-kakxmc14 312 27 Synthesis Synthesis NNP cord-293304-kakxmc14 312 28 , , , cord-293304-kakxmc14 312 29 Biological Biological NNP cord-293304-kakxmc14 312 30 Evaluation Evaluation NNP cord-293304-kakxmc14 312 31 , , , cord-293304-kakxmc14 312 32 and and CC cord-293304-kakxmc14 312 33 Docking Docking NNP cord-293304-kakxmc14 312 34 Simulation Simulation NNP cord-293304-kakxmc14 312 35 Study Study NNP cord-293304-kakxmc14 312 36 . . . cord-293304-kakxmc14 313 1 Asian asian JJ cord-293304-kakxmc14 313 2 Pac Pac NNP cord-293304-kakxmc14 313 3 Pi Pi NNP cord-293304-kakxmc14 313 4 - - HYPH cord-293304-kakxmc14 313 5 Interactions Interactions NNPS cord-293304-kakxmc14 313 6 in in IN cord-293304-kakxmc14 313 7 Proteins Proteins NNP cord-293304-kakxmc14 313 8 PH PH NNP cord-293304-kakxmc14 313 9 - - HYPH cord-293304-kakxmc14 313 10 Dependent Dependent NNP cord-293304-kakxmc14 313 11 Entry Entry NNP cord-293304-kakxmc14 313 12 of of IN cord-293304-kakxmc14 313 13 Severe severe JJ cord-293304-kakxmc14 313 14 Acute acute JJ cord-293304-kakxmc14 313 15 Respiratory Respiratory NNP cord-293304-kakxmc14 313 16 Syndrome Syndrome NNP cord-293304-kakxmc14 313 17 Coronavirus Coronavirus NNP cord-293304-kakxmc14 313 18 Is be VBZ cord-293304-kakxmc14 313 19 Mediated mediate VBN cord-293304-kakxmc14 313 20 by by IN cord-293304-kakxmc14 313 21 the the DT cord-293304-kakxmc14 313 22 Spike Spike NNP cord-293304-kakxmc14 313 23 Glycoprotein Glycoprotein NNP cord-293304-kakxmc14 313 24 and and CC cord-293304-kakxmc14 313 25 Enhanced enhance VBN cord-293304-kakxmc14 313 26 by by IN cord-293304-kakxmc14 313 27 Dendritic Dendritic NNP cord-293304-kakxmc14 313 28 Cell Cell NNP cord-293304-kakxmc14 313 29 Transfer Transfer NNP cord-293304-kakxmc14 313 30 through through IN cord-293304-kakxmc14 313 31 DC DC NNP cord-293304-kakxmc14 313 32 - - HYPH cord-293304-kakxmc14 313 33 SIGN SIGN NNP cord-293304-kakxmc14 313 34 Primaquine Primaquine NNP cord-293304-kakxmc14 313 35 or or CC cord-293304-kakxmc14 313 36 Other Other NNP cord-293304-kakxmc14 313 37 8-Aminoquinolines 8-aminoquinolines CD cord-293304-kakxmc14 313 38 for for IN cord-293304-kakxmc14 313 39 Reducing reduce VBG cord-293304-kakxmc14 313 40 Plasmodium Plasmodium NNP cord-293304-kakxmc14 313 41 Falciparum Falciparum NNP cord-293304-kakxmc14 313 42 Transmission Transmission NNP cord-293304-kakxmc14 313 43 Primaquine Primaquine NNP cord-293304-kakxmc14 313 44 Therapy Therapy NNP cord-293304-kakxmc14 313 45 for for IN cord-293304-kakxmc14 313 46 Malaria Malaria NNP cord-293304-kakxmc14 313 47 Analysis Analysis NNP cord-293304-kakxmc14 313 48 for for IN cord-293304-kakxmc14 313 49 Antioxidant antioxidant NN cord-293304-kakxmc14 313 50 Activity Activity NNP cord-293304-kakxmc14 313 51 of of IN cord-293304-kakxmc14 313 52 Dipicolinic Dipicolinic NNP cord-293304-kakxmc14 313 53 Acid Acid NNP cord-293304-kakxmc14 313 54 Derivatives Derivatives NNPS cord-293304-kakxmc14 313 55 QSAR QSAR NNP cord-293304-kakxmc14 313 56 Study Study NNP cord-293304-kakxmc14 313 57 of of IN cord-293304-kakxmc14 313 58 Anti Anti NNP cord-293304-kakxmc14 313 59 - - JJ cord-293304-kakxmc14 313 60 Human human JJ cord-293304-kakxmc14 313 61 African African NNP cord-293304-kakxmc14 313 62 Trypanosomiasis Trypanosomiasis NNP cord-293304-kakxmc14 313 63 Activity Activity NNP cord-293304-kakxmc14 313 64 for for IN cord-293304-kakxmc14 313 65 2-Phenylimidazopyridines 2-phenylimidazopyridines CD cord-293304-kakxmc14 313 66 Derivatives derivative NNS cord-293304-kakxmc14 314 1 Using use VBG cord-293304-kakxmc14 314 2 DFT DFT NNP cord-293304-kakxmc14 314 3 and and CC cord-293304-kakxmc14 314 4 Lipinski Lipinski NNP cord-293304-kakxmc14 314 5 's 's POS cord-293304-kakxmc14 314 6 Descriptors descriptor NNS cord-293304-kakxmc14 314 7 . . . cord-293304-kakxmc14 315 1 Heliyon Heliyon NNP cord-293304-kakxmc14 315 2 QSAR QSAR NNP cord-293304-kakxmc14 315 3 with with IN cord-293304-kakxmc14 315 4 Electro Electro NNP cord-293304-kakxmc14 315 5 Topological Topological NNP cord-293304-kakxmc14 315 6 State State NNP cord-293304-kakxmc14 315 7 Atom Atom NNP cord-293304-kakxmc14 315 8 Index Index NNP cord-293304-kakxmc14 315 9 : : : cord-293304-kakxmc14 316 1 Antialirenergic Antialirenergic NNP cord-293304-kakxmc14 316 2 Activi Activi NNP cord-293304-kakxmc14 316 3 Ty Ty NNP cord-293304-kakxmc14 316 4 of of IN cord-293304-kakxmc14 316 5 N N NNP cord-293304-kakxmc14 316 6 , , , cord-293304-kakxmc14 316 7 N n CD cord-293304-kakxmc14 316 8 - - HYPH cord-293304-kakxmc14 316 9 Dimethyl-2-Bromo-2-Phenylethylamines Dimethyl-2-Bromo-2-Phenylethylamines NNPS cord-293304-kakxmc14 317 1 The the DT cord-293304-kakxmc14 317 2 Molecular Molecular NNP cord-293304-kakxmc14 317 3 Connectivity Connectivity NNP cord-293304-kakxmc14 317 4 Chi Chi NNP cord-293304-kakxmc14 317 5 Indexes Indexes NNP cord-293304-kakxmc14 317 6 and and CC cord-293304-kakxmc14 317 7 Kappa Kappa NNP cord-293304-kakxmc14 317 8 Shape Shape NNP cord-293304-kakxmc14 317 9 Indexes Indexes NNP cord-293304-kakxmc14 317 10 in in IN cord-293304-kakxmc14 317 11 Structure Structure NNP cord-293304-kakxmc14 317 12 - - HYPH cord-293304-kakxmc14 317 13 Property Property NNP cord-293304-kakxmc14 317 14 Modeling Modeling NNP cord-293304-kakxmc14 317 15 . . . cord-293304-kakxmc14 318 1 Reviews review NNS cord-293304-kakxmc14 318 2 in in IN cord-293304-kakxmc14 318 3 Computational Computational NNP cord-293304-kakxmc14 318 4 Chemistry Chemistry NNP cord-293304-kakxmc14 318 5 ) ) -RRB- cord-293304-kakxmc14 319 1 Yap Yap NNP cord-293304-kakxmc14 319 2 , , , cord-293304-kakxmc14 319 3 C. C. NNP cord-293304-kakxmc14 319 4 W. W. NNP cord-293304-kakxmc14 319 5 PaDEL PaDEL NNP cord-293304-kakxmc14 319 6 - - HYPH cord-293304-kakxmc14 319 7 Descriptor Descriptor NNP cord-293304-kakxmc14 319 8 : : : cord-293304-kakxmc14 319 9 An an DT cord-293304-kakxmc14 319 10 open open JJ cord-293304-kakxmc14 319 11 source source NN cord-293304-kakxmc14 319 12 software software NN cord-293304-kakxmc14 319 13 to to TO cord-293304-kakxmc14 319 14 calculate calculate VB cord-293304-kakxmc14 319 15 molecular molecular JJ cord-293304-kakxmc14 319 16 descriptors descriptor NNS cord-293304-kakxmc14 319 17 and and CC cord-293304-kakxmc14 319 18 fingerprints fingerprint NNS cord-293304-kakxmc14 319 19 Investigation Investigation NNP cord-293304-kakxmc14 319 20 of of IN cord-293304-kakxmc14 319 21 5,6-Dihydro-2-Pyrones 5,6-dihydro-2-pyrones CD cord-293304-kakxmc14 319 22 Derivatives Derivatives NNPS cord-293304-kakxmc14 319 23 as as IN cord-293304-kakxmc14 319 24 Potent Potent NNP cord-293304-kakxmc14 319 25 Anti Anti NNP cord-293304-kakxmc14 319 26 - - JJ cord-293304-kakxmc14 319 27 HIV HIV NNP cord-293304-kakxmc14 319 28 Agents Agents NNPS cord-293304-kakxmc14 319 29 Inhibitors Inhibitors NNP cord-293304-kakxmc14 319 30 Quantitative Quantitative NNP cord-293304-kakxmc14 319 31 Regression Regression NNP cord-293304-kakxmc14 319 32 Models Models NNPS cord-293304-kakxmc14 319 33 for for IN cord-293304-kakxmc14 319 34 the the DT cord-293304-kakxmc14 319 35 Prediction Prediction NNP cord-293304-kakxmc14 319 36 of of IN cord-293304-kakxmc14 319 37 Chemical Chemical NNP cord-293304-kakxmc14 319 38 Properties Properties NNPS cord-293304-kakxmc14 319 39 by by IN cord-293304-kakxmc14 319 40 an an DT cord-293304-kakxmc14 319 41 Efficient Efficient NNP cord-293304-kakxmc14 319 42 Workflow Workflow NNP cord-293304-kakxmc14 319 43 Synthesis Synthesis NNP cord-293304-kakxmc14 319 44 and and CC cord-293304-kakxmc14 319 45 Blood blood NN cord-293304-kakxmc14 319 46 - - HYPH cord-293304-kakxmc14 319 47 Schizontocidal Schizontocidal NNP cord-293304-kakxmc14 319 48 Antimalarial Antimalarial NNP cord-293304-kakxmc14 319 49 Activities Activities NNPS cord-293304-kakxmc14 319 50 of of IN cord-293304-kakxmc14 319 51 2-Substituted/2 2-substituted/2 CD cord-293304-kakxmc14 319 52 , , , cord-293304-kakxmc14 319 53 5-Disubstituted-8-Quinolinamines 5-disubstituted-8-quinolinamines CD cord-293304-kakxmc14 319 54 and and CC cord-293304-kakxmc14 319 55 Some some DT cord-293304-kakxmc14 319 56 of of IN cord-293304-kakxmc14 319 57 Their -PRON- PRP$ cord-293304-kakxmc14 319 58 Amino amino NN cord-293304-kakxmc14 319 59 Acid Acid NNP cord-293304-kakxmc14 319 60 Conjugates Conjugates NNP cord-293304-kakxmc14 319 61 Discovery Discovery NNP cord-293304-kakxmc14 319 62 of of IN cord-293304-kakxmc14 319 63 a a DT cord-293304-kakxmc14 319 64 Bulky bulky JJ cord-293304-kakxmc14 319 65 2-Tert 2-tert CD cord-293304-kakxmc14 320 1 -Butyl -Butyl : cord-293304-kakxmc14 320 2 Group Group NNP cord-293304-kakxmc14 320 3 Containing Containing NNP cord-293304-kakxmc14 320 4 Primaquine Primaquine NNP cord-293304-kakxmc14 320 5 Analogue Analogue NNP cord-293304-kakxmc14 321 1 That that DT cord-293304-kakxmc14 321 2 Exhibits exhibit VBZ cord-293304-kakxmc14 321 3 Potent potent JJ cord-293304-kakxmc14 321 4 Blood Blood NNP cord-293304-kakxmc14 321 5 - - HYPH cord-293304-kakxmc14 321 6 Schizontocidal Schizontocidal NNP cord-293304-kakxmc14 321 7 Antimalarial Antimalarial NNP cord-293304-kakxmc14 321 8 Activities Activities NNPS cord-293304-kakxmc14 321 9 and and CC cord-293304-kakxmc14 321 10 Complete complete JJ cord-293304-kakxmc14 321 11 Elimination elimination NN cord-293304-kakxmc14 321 12 of of IN cord-293304-kakxmc14 321 13 Methemoglobin Methemoglobin NNP cord-293304-kakxmc14 321 14 Toxicity toxicity NN cord-293304-kakxmc14 321 15 Blood blood NN cord-293304-kakxmc14 321 16 Stage stage NN cord-293304-kakxmc14 321 17 Antimalarial Antimalarial NNP cord-293304-kakxmc14 321 18 Efficacy Efficacy NNP cord-293304-kakxmc14 321 19 of of IN cord-293304-kakxmc14 321 20 Primaquine Primaquine NNP cord-293304-kakxmc14 321 21 in in IN cord-293304-kakxmc14 321 22 Plasmodium Plasmodium NNP cord-293304-kakxmc14 321 23 Vivax Vivax NNP cord-293304-kakxmc14 321 24 Malaria Malaria NNP cord-293304-kakxmc14 321 25 Insights Insights NNPS cord-293304-kakxmc14 321 26 into into IN cord-293304-kakxmc14 321 27 Thiol Thiol NNP cord-293304-kakxmc14 321 28 - - HYPH cord-293304-kakxmc14 321 29 Aromatic Aromatic NNP cord-293304-kakxmc14 321 30 Interactions Interactions NNPS cord-293304-kakxmc14 321 31 : : : cord-293304-kakxmc14 322 1 A a DT cord-293304-kakxmc14 322 2 Stereoelectronic Stereoelectronic NNP cord-293304-kakxmc14 322 3 Basis Basis NNP cord-293304-kakxmc14 322 4 for for IN cord-293304-kakxmc14 322 5 S S NNP cord-293304-kakxmc14 322 6 -H -h ADD cord-293304-kakxmc14 323 1 / / NFP cord-293304-kakxmc14 324 1 π π LS cord-293304-kakxmc14 325 1 Interactions Interactions NNP cord-293304-kakxmc14 325 2 Docking Docking NNP cord-293304-kakxmc14 325 3 Studies Studies NNPS cord-293304-kakxmc14 325 4 and and CC cord-293304-kakxmc14 325 5 Molecular Molecular NNP cord-293304-kakxmc14 325 6 Dynamics Dynamics NNPS cord-293304-kakxmc14 325 7 Simulations Simulations NNPS cord-293304-kakxmc14 325 8 of of IN cord-293304-kakxmc14 325 9 the the DT cord-293304-kakxmc14 325 10 Binding Binding NNP cord-293304-kakxmc14 325 11 Characteristics Characteristics NNP cord-293304-kakxmc14 325 12 of of IN cord-293304-kakxmc14 325 13 Waldiomycin Waldiomycin NNP cord-293304-kakxmc14 325 14 and and CC cord-293304-kakxmc14 325 15 Its -PRON- PRP$ cord-293304-kakxmc14 325 16 Methyl Methyl NNP cord-293304-kakxmc14 325 17 Ester Ester NNP cord-293304-kakxmc14 325 18 Analog Analog NNP cord-293304-kakxmc14 325 19 to to IN cord-293304-kakxmc14 325 20 Staphylococcus Staphylococcus NNP cord-293304-kakxmc14 325 21 Aureus Aureus NNP cord-293304-kakxmc14 325 22 Histidine Histidine NNP cord-293304-kakxmc14 325 23 Kinase Kinase NNP cord-293304-kakxmc14 325 24 Understanding understand VBG cord-293304-kakxmc14 325 25 the the DT cord-293304-kakxmc14 325 26 Structural Structural NNP cord-293304-kakxmc14 325 27 Features Features NNPS cord-293304-kakxmc14 325 28 of of IN cord-293304-kakxmc14 325 29 JAK2 JAK2 NNP cord-293304-kakxmc14 325 30 Inhibitors Inhibitors NNP cord-293304-kakxmc14 325 31 : : : cord-293304-kakxmc14 325 32 A a DT cord-293304-kakxmc14 325 33 Combined combined JJ cord-293304-kakxmc14 325 34 3D 3d NN cord-293304-kakxmc14 325 35 - - HYPH cord-293304-kakxmc14 325 36 QSAR QSAR NNP cord-293304-kakxmc14 325 37 , , , cord-293304-kakxmc14 325 38 DFT DFT NNP cord-293304-kakxmc14 325 39 and and CC cord-293304-kakxmc14 325 40 Molecular Molecular NNP cord-293304-kakxmc14 325 41 Dynamics Dynamics NNPS cord-293304-kakxmc14 325 42 Study Study NNP cord-293304-kakxmc14 325 43 Molecular Molecular NNP cord-293304-kakxmc14 325 44 Docking Docking NNP cord-293304-kakxmc14 325 45 and and CC cord-293304-kakxmc14 325 46 Molecular Molecular NNP cord-293304-kakxmc14 325 47 Dynamics Dynamics NNPS cord-293304-kakxmc14 326 1 to to TO cord-293304-kakxmc14 326 2 Identify identify VB cord-293304-kakxmc14 326 3 a a DT cord-293304-kakxmc14 326 4 Novel Novel NNP cord-293304-kakxmc14 326 5 Human Human NNP cord-293304-kakxmc14 326 6 Immunodeficiency Immunodeficiency NNP cord-293304-kakxmc14 326 7 Virus Virus NNP cord-293304-kakxmc14 326 8 Inhibitor Inhibitor NNP cord-293304-kakxmc14 326 9 from from IN cord-293304-kakxmc14 326 10 Alkaloids alkaloid NNS cord-293304-kakxmc14 326 11 of of IN cord-293304-kakxmc14 326 12 Toddalia Toddalia NNP cord-293304-kakxmc14 326 13 Asiatica Asiatica NNP cord-293304-kakxmc14 326 14 Molecular Molecular NNP cord-293304-kakxmc14 326 15 Docking Docking NNP cord-293304-kakxmc14 326 16 and and CC cord-293304-kakxmc14 326 17 Molecular Molecular NNP cord-293304-kakxmc14 326 18 Dynamics Dynamics NNPS cord-293304-kakxmc14 326 19 Simulation Simulation NNP cord-293304-kakxmc14 326 20 Studies Studies NNPS cord-293304-kakxmc14 326 21 to to TO cord-293304-kakxmc14 326 22 Identify identify VB cord-293304-kakxmc14 326 23 Potent potent JJ cord-293304-kakxmc14 326 24 AURKA AURKA NNP cord-293304-kakxmc14 326 25 Inhibitors Inhibitors NNP cord-293304-kakxmc14 326 26 : : : cord-293304-kakxmc14 326 27 Assessing assess VBG cord-293304-kakxmc14 326 28 the the DT cord-293304-kakxmc14 326 29 Performance Performance NNP cord-293304-kakxmc14 326 30 of of IN cord-293304-kakxmc14 326 31 Density Density NNP cord-293304-kakxmc14 326 32 Functional Functional NNP cord-293304-kakxmc14 326 33 Theory Theory NNP cord-293304-kakxmc14 326 34 , , , cord-293304-kakxmc14 326 35 MM MM NNP cord-293304-kakxmc14 326 36 - - HYPH cord-293304-kakxmc14 326 37 GBSA GBSA NNP cord-293304-kakxmc14 326 38 and and CC cord-293304-kakxmc14 326 39 Mass Mass NNP cord-293304-kakxmc14 326 40 Action Action NNP cord-293304-kakxmc14 326 41 Kinetics Kinetics NNP cord-293304-kakxmc14 326 42 Calculations Calculations NNPS cord-293304-kakxmc14 327 1 The the DT cord-293304-kakxmc14 327 2 authors author NNS cord-293304-kakxmc14 327 3 declare declare VBP cord-293304-kakxmc14 327 4 no no DT cord-293304-kakxmc14 327 5 competing compete VBG cord-293304-kakxmc14 327 6 financial financial JJ cord-293304-kakxmc14 327 7 interest interest NN cord-293304-kakxmc14 327 8 . . . cord-293304-kakxmc14 328 1 The the DT cord-293304-kakxmc14 328 2 authors author NNS cord-293304-kakxmc14 328 3 gratefully gratefully RB cord-293304-kakxmc14 328 4 acknowledge acknowledge VBP cord-293304-kakxmc14 328 5 generous generous JJ cord-293304-kakxmc14 328 6 funding funding NN cord-293304-kakxmc14 328 7 from from IN cord-293304-kakxmc14 328 8 Kerala Kerala NNP cord-293304-kakxmc14 328 9 State State NNP cord-293304-kakxmc14 328 10 Council Council NNP cord-293304-kakxmc14 328 11 for for IN cord-293304-kakxmc14 328 12 Science Science NNP cord-293304-kakxmc14 328 13 , , , cord-293304-kakxmc14 328 14 Technology Technology NNP cord-293304-kakxmc14 328 15 and and CC cord-293304-kakxmc14 328 16 Environment Environment NNP cord-293304-kakxmc14 328 17 ( ( -LRB- cord-293304-kakxmc14 328 18 KSCSTE KSCSTE NNP cord-293304-kakxmc14 328 19 ) ) -RRB- cord-293304-kakxmc14 328 20 for for IN cord-293304-kakxmc14 328 21 the the DT cord-293304-kakxmc14 328 22 Junior Junior NNP cord-293304-kakxmc14 328 23 Research Research NNP cord-293304-kakxmc14 328 24 Fellowship Fellowship NNP cord-293304-kakxmc14 328 25 ( ( -LRB- cord-293304-kakxmc14 328 26 No no NN cord-293304-kakxmc14 328 27 . . NN cord-293304-kakxmc14 328 28 414/2020 414/2020 CD cord-293304-kakxmc14 328 29 / / SYM cord-293304-kakxmc14 328 30 KSCSTE KSCSTE NNP cord-293304-kakxmc14 328 31 ) ) -RRB- cord-293304-kakxmc14 328 32 . . .