id	sid	tid	token	lemma	pos
cord-002728-6oyw5sqv	1	1	key	key	JJ
cord-002728-6oyw5sqv	1	2	:	:	:
cord-002728-6oyw5sqv	1	3	cord-002728	cord-002728	NNP
cord-002728-6oyw5sqv	1	4	-	-	HYPH
cord-002728-6oyw5sqv	1	5	6oyw5sqv	6oyw5sqv	CD
cord-002728-6oyw5sqv	1	6	authors	author	NNS
cord-002728-6oyw5sqv	1	7	:	:	:
cord-002728-6oyw5sqv	1	8	Carding	Carding	NNP
cord-002728-6oyw5sqv	1	9	,	,	,
cord-002728-6oyw5sqv	1	10	S.	S.	NNP
cord-002728-6oyw5sqv	1	11	R.	R.	NNP
cord-002728-6oyw5sqv	1	12	;	;	:
cord-002728-6oyw5sqv	1	13	Davis	Davis	NNP
cord-002728-6oyw5sqv	1	14	,	,	,
cord-002728-6oyw5sqv	1	15	N.	N.	NNP
cord-002728-6oyw5sqv	1	16	;	;	:
cord-002728-6oyw5sqv	1	17	Hoyles	Hoyles	NNP
cord-002728-6oyw5sqv	1	18	,	,	,
cord-002728-6oyw5sqv	1	19	L.	L.	NNP
cord-002728-6oyw5sqv	1	20	title	title	NN
cord-002728-6oyw5sqv	1	21	:	:	:
cord-002728-6oyw5sqv	2	1	Review	Review	NNP
cord-002728-6oyw5sqv	2	2	article	article	NN
cord-002728-6oyw5sqv	2	3	:	:	:
cord-002728-6oyw5sqv	2	4	the	the	DT
cord-002728-6oyw5sqv	2	5	human	human	JJ
cord-002728-6oyw5sqv	2	6	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	2	7	virome	virome	NN
cord-002728-6oyw5sqv	2	8	in	in	IN
cord-002728-6oyw5sqv	2	9	health	health	NN
cord-002728-6oyw5sqv	2	10	and	and	CC
cord-002728-6oyw5sqv	2	11	disease	disease	NN
cord-002728-6oyw5sqv	2	12	date	date	NN
cord-002728-6oyw5sqv	2	13	:	:	:
cord-002728-6oyw5sqv	2	14	2017	2017	CD
cord-002728-6oyw5sqv	2	15	-	-	HYPH
cord-002728-6oyw5sqv	2	16	09	09	CD
cord-002728-6oyw5sqv	2	17	-	-	HYPH
cord-002728-6oyw5sqv	2	18	04	04	CD
cord-002728-6oyw5sqv	2	19	journal	journal	NN
cord-002728-6oyw5sqv	2	20	:	:	:
cord-002728-6oyw5sqv	3	1	Aliment	Aliment	NNP
cord-002728-6oyw5sqv	3	2	Pharmacol	Pharmacol	NNP
cord-002728-6oyw5sqv	4	1	Ther	ther	JJ
cord-002728-6oyw5sqv	4	2	DOI	DOI	NNP
cord-002728-6oyw5sqv	4	3	:	:	:
cord-002728-6oyw5sqv	5	1	10.1111	10.1111	CD
cord-002728-6oyw5sqv	5	2	/	/	SYM
cord-002728-6oyw5sqv	5	3	apt.14280	apt.14280	NNP
cord-002728-6oyw5sqv	5	4	sha	sha	NNP
cord-002728-6oyw5sqv	5	5	:	:	:
cord-002728-6oyw5sqv	5	6	16406822b5673734cefa5a986007b6fff662c7b5	16406822b5673734cefa5a986007b6fff662c7b5	CD
cord-002728-6oyw5sqv	5	7	doc_id	doc_id	CD
cord-002728-6oyw5sqv	5	8	:	:	:
cord-002728-6oyw5sqv	5	9	2728	2728	CD
cord-002728-6oyw5sqv	5	10	cord_uid	cord_uid	NNS
cord-002728-6oyw5sqv	5	11	:	:	:
cord-002728-6oyw5sqv	5	12	6oyw5sqv	6oyw5sqv	.
cord-002728-6oyw5sqv	6	1	BACKGROUND	background	NN
cord-002728-6oyw5sqv	6	2	:	:	:
cord-002728-6oyw5sqv	7	1	The	the	DT
cord-002728-6oyw5sqv	7	2	human	human	JJ
cord-002728-6oyw5sqv	7	3	virome	virome	NN
cord-002728-6oyw5sqv	7	4	consists	consist	VBZ
cord-002728-6oyw5sqv	7	5	of	of	IN
cord-002728-6oyw5sqv	7	6	animal‐cell	animal‐cell	NNP
cord-002728-6oyw5sqv	7	7	viruses	virus	NNS
cord-002728-6oyw5sqv	7	8	causing	cause	VBG
cord-002728-6oyw5sqv	7	9	transient	transient	JJ
cord-002728-6oyw5sqv	7	10	infections	infection	NNS
cord-002728-6oyw5sqv	7	11	,	,	,
cord-002728-6oyw5sqv	8	1	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	8	2	(	(	-LRB-
cord-002728-6oyw5sqv	8	3	phage	phage	NN
cord-002728-6oyw5sqv	8	4	)	)	-RRB-
cord-002728-6oyw5sqv	8	5	predators	predator	NNS
cord-002728-6oyw5sqv	8	6	of	of	IN
cord-002728-6oyw5sqv	8	7	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	8	8	and	and	CC
cord-002728-6oyw5sqv	8	9	archaea	archaea	NNS
cord-002728-6oyw5sqv	8	10	,	,	,
cord-002728-6oyw5sqv	8	11	endogenous	endogenous	JJ
cord-002728-6oyw5sqv	8	12	retroviruses	retrovirus	NNS
cord-002728-6oyw5sqv	8	13	and	and	CC
cord-002728-6oyw5sqv	8	14	viruses	virus	NNS
cord-002728-6oyw5sqv	8	15	causing	cause	VBG
cord-002728-6oyw5sqv	8	16	persistent	persistent	JJ
cord-002728-6oyw5sqv	8	17	and	and	CC
cord-002728-6oyw5sqv	8	18	latent	latent	JJ
cord-002728-6oyw5sqv	8	19	infections	infection	NNS
cord-002728-6oyw5sqv	8	20	.	.	.
cord-002728-6oyw5sqv	9	1	High‐throughput	High‐throughput	NNP
cord-002728-6oyw5sqv	9	2	,	,	,
cord-002728-6oyw5sqv	9	3	inexpensive	inexpensive	JJ
cord-002728-6oyw5sqv	9	4	,	,	,
cord-002728-6oyw5sqv	9	5	sensitive	sensitive	JJ
cord-002728-6oyw5sqv	9	6	sequencing	sequencing	NN
cord-002728-6oyw5sqv	9	7	methods	method	NNS
cord-002728-6oyw5sqv	9	8	and	and	CC
cord-002728-6oyw5sqv	9	9	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	9	10	now	now	RB
cord-002728-6oyw5sqv	9	11	make	make	VBP
cord-002728-6oyw5sqv	9	12	it	-PRON-	PRP
cord-002728-6oyw5sqv	9	13	possible	possible	JJ
cord-002728-6oyw5sqv	9	14	to	to	TO
cord-002728-6oyw5sqv	9	15	study	study	VB
cord-002728-6oyw5sqv	9	16	the	the	DT
cord-002728-6oyw5sqv	9	17	contribution	contribution	NN
cord-002728-6oyw5sqv	9	18	dsDNA	dsdna	RB
cord-002728-6oyw5sqv	9	19	,	,	,
cord-002728-6oyw5sqv	9	20	ssDNA	ssdna	JJ
cord-002728-6oyw5sqv	9	21	and	and	CC
cord-002728-6oyw5sqv	9	22	RNA	RNA	NNP
cord-002728-6oyw5sqv	9	23	virus‐like	virus‐like	NNP
cord-002728-6oyw5sqv	9	24	particles	particle	NNS
cord-002728-6oyw5sqv	9	25	make	make	VBP
cord-002728-6oyw5sqv	9	26	to	to	IN
cord-002728-6oyw5sqv	9	27	the	the	DT
cord-002728-6oyw5sqv	9	28	human	human	JJ
cord-002728-6oyw5sqv	9	29	virome	virome	NN
cord-002728-6oyw5sqv	9	30	,	,	,
cord-002728-6oyw5sqv	9	31	and	and	CC
cord-002728-6oyw5sqv	9	32	in	in	IN
cord-002728-6oyw5sqv	9	33	particular	particular	JJ
cord-002728-6oyw5sqv	9	34	the	the	DT
cord-002728-6oyw5sqv	9	35	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	9	36	virome	virome	NN
cord-002728-6oyw5sqv	9	37	.	.	.
cord-002728-6oyw5sqv	10	1	AIM	aim	VB
cord-002728-6oyw5sqv	10	2	:	:	:
cord-002728-6oyw5sqv	11	1	To	to	TO
cord-002728-6oyw5sqv	11	2	review	review	VB
cord-002728-6oyw5sqv	11	3	and	and	CC
cord-002728-6oyw5sqv	11	4	evaluate	evaluate	VB
cord-002728-6oyw5sqv	11	5	the	the	DT
cord-002728-6oyw5sqv	11	6	pioneering	pioneering	JJ
cord-002728-6oyw5sqv	11	7	studies	study	NNS
cord-002728-6oyw5sqv	11	8	that	that	WDT
cord-002728-6oyw5sqv	11	9	have	have	VBP
cord-002728-6oyw5sqv	11	10	attempted	attempt	VBN
cord-002728-6oyw5sqv	11	11	to	to	TO
cord-002728-6oyw5sqv	11	12	characterise	characterise	VB
cord-002728-6oyw5sqv	11	13	the	the	DT
cord-002728-6oyw5sqv	11	14	human	human	JJ
cord-002728-6oyw5sqv	11	15	virome	virome	NN
cord-002728-6oyw5sqv	11	16	and	and	CC
cord-002728-6oyw5sqv	11	17	generated	generate	VBD
cord-002728-6oyw5sqv	11	18	an	an	DT
cord-002728-6oyw5sqv	11	19	increased	increase	VBN
cord-002728-6oyw5sqv	11	20	interest	interest	NN
cord-002728-6oyw5sqv	11	21	in	in	IN
cord-002728-6oyw5sqv	11	22	understanding	understand	VBG
cord-002728-6oyw5sqv	11	23	how	how	WRB
cord-002728-6oyw5sqv	11	24	the	the	DT
cord-002728-6oyw5sqv	11	25	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	11	26	virome	virome	NN
cord-002728-6oyw5sqv	11	27	might	may	MD
cord-002728-6oyw5sqv	11	28	contribute	contribute	VB
cord-002728-6oyw5sqv	11	29	to	to	IN
cord-002728-6oyw5sqv	11	30	maintaining	maintain	VBG
cord-002728-6oyw5sqv	11	31	health	health	NN
cord-002728-6oyw5sqv	11	32	,	,	,
cord-002728-6oyw5sqv	11	33	and	and	CC
cord-002728-6oyw5sqv	11	34	the	the	DT
cord-002728-6oyw5sqv	11	35	pathogenesis	pathogenesis	NN
cord-002728-6oyw5sqv	11	36	of	of	IN
cord-002728-6oyw5sqv	11	37	chronic	chronic	JJ
cord-002728-6oyw5sqv	11	38	diseases	disease	NNS
cord-002728-6oyw5sqv	11	39	.	.	.
cord-002728-6oyw5sqv	12	1	METHODS	methods	NN
cord-002728-6oyw5sqv	12	2	:	:	:
cord-002728-6oyw5sqv	13	1	Relevant	relevant	JJ
cord-002728-6oyw5sqv	13	2	virome‐related	virome‐related	JJ
cord-002728-6oyw5sqv	13	3	articles	article	NNS
cord-002728-6oyw5sqv	13	4	were	be	VBD
cord-002728-6oyw5sqv	13	5	selected	select	VBN
cord-002728-6oyw5sqv	13	6	for	for	IN
cord-002728-6oyw5sqv	13	7	review	review	NN
cord-002728-6oyw5sqv	13	8	following	follow	VBG
cord-002728-6oyw5sqv	13	9	extensive	extensive	JJ
cord-002728-6oyw5sqv	13	10	language‐	language‐	NN
cord-002728-6oyw5sqv	13	11	and	and	CC
cord-002728-6oyw5sqv	13	12	date‐unrestricted	date‐unrestricted	JJ
cord-002728-6oyw5sqv	13	13	,	,	,
cord-002728-6oyw5sqv	13	14	electronic	electronic	JJ
cord-002728-6oyw5sqv	13	15	searches	search	NNS
cord-002728-6oyw5sqv	13	16	of	of	IN
cord-002728-6oyw5sqv	13	17	the	the	DT
cord-002728-6oyw5sqv	13	18	literature	literature	NN
cord-002728-6oyw5sqv	13	19	.	.	.
cord-002728-6oyw5sqv	14	1	RESULTS	result	NNS
cord-002728-6oyw5sqv	14	2	:	:	:
cord-002728-6oyw5sqv	15	1	The	the	DT
cord-002728-6oyw5sqv	15	2	human	human	JJ
cord-002728-6oyw5sqv	15	3	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	15	4	virome	virome	NN
cord-002728-6oyw5sqv	15	5	is	be	VBZ
cord-002728-6oyw5sqv	15	6	personalised	personalised	JJ
cord-002728-6oyw5sqv	15	7	and	and	CC
cord-002728-6oyw5sqv	15	8	stable	stable	JJ
cord-002728-6oyw5sqv	15	9	,	,	,
cord-002728-6oyw5sqv	15	10	and	and	CC
cord-002728-6oyw5sqv	15	11	dominated	dominate	VBN
cord-002728-6oyw5sqv	15	12	by	by	IN
cord-002728-6oyw5sqv	15	13	phages	phage	NNS
cord-002728-6oyw5sqv	15	14	.	.	.
cord-002728-6oyw5sqv	16	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	16	2	develops	develop	VBZ
cord-002728-6oyw5sqv	16	3	soon	soon	RB
cord-002728-6oyw5sqv	16	4	after	after	IN
cord-002728-6oyw5sqv	16	5	birth	birth	NN
cord-002728-6oyw5sqv	16	6	in	in	IN
cord-002728-6oyw5sqv	16	7	parallel	parallel	NN
cord-002728-6oyw5sqv	16	8	with	with	IN
cord-002728-6oyw5sqv	16	9	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	16	10	communities	community	NNS
cord-002728-6oyw5sqv	16	11	of	of	IN
cord-002728-6oyw5sqv	16	12	the	the	DT
cord-002728-6oyw5sqv	16	13	microbiota	microbiota	NN
cord-002728-6oyw5sqv	16	14	,	,	,
cord-002728-6oyw5sqv	16	15	becoming	become	VBG
cord-002728-6oyw5sqv	16	16	established	establish	VBN
cord-002728-6oyw5sqv	16	17	during	during	IN
cord-002728-6oyw5sqv	16	18	the	the	DT
cord-002728-6oyw5sqv	16	19	first	first	JJ
cord-002728-6oyw5sqv	16	20	few	few	JJ
cord-002728-6oyw5sqv	16	21	years	year	NNS
cord-002728-6oyw5sqv	16	22	of	of	IN
cord-002728-6oyw5sqv	16	23	life	life	NN
cord-002728-6oyw5sqv	16	24	.	.	.
cord-002728-6oyw5sqv	17	1	By	by	IN
cord-002728-6oyw5sqv	17	2	infecting	infect	VBG
cord-002728-6oyw5sqv	17	3	specific	specific	JJ
cord-002728-6oyw5sqv	17	4	populations	population	NNS
cord-002728-6oyw5sqv	17	5	of	of	IN
cord-002728-6oyw5sqv	17	6	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	17	7	,	,	,
cord-002728-6oyw5sqv	17	8	phages	phage	NNS
cord-002728-6oyw5sqv	17	9	can	can	MD
cord-002728-6oyw5sqv	17	10	alter	alter	VB
cord-002728-6oyw5sqv	17	11	microbiota	microbiota	NN
cord-002728-6oyw5sqv	17	12	structure	structure	NN
cord-002728-6oyw5sqv	17	13	by	by	IN
cord-002728-6oyw5sqv	17	14	killing	kill	VBG
cord-002728-6oyw5sqv	17	15	host	host	NN
cord-002728-6oyw5sqv	17	16	cells	cell	NNS
cord-002728-6oyw5sqv	17	17	or	or	CC
cord-002728-6oyw5sqv	17	18	altering	alter	VBG
cord-002728-6oyw5sqv	17	19	their	-PRON-	PRP$
cord-002728-6oyw5sqv	17	20	phenotype	phenotype	NN
cord-002728-6oyw5sqv	17	21	,	,	,
cord-002728-6oyw5sqv	17	22	enabling	enable	VBG
cord-002728-6oyw5sqv	17	23	phages	phage	NNS
cord-002728-6oyw5sqv	17	24	to	to	TO
cord-002728-6oyw5sqv	17	25	contribute	contribute	VB
cord-002728-6oyw5sqv	17	26	to	to	IN
cord-002728-6oyw5sqv	17	27	maintaining	maintain	VBG
cord-002728-6oyw5sqv	17	28	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	17	29	homeostasis	homeostasis	NN
cord-002728-6oyw5sqv	17	30	or	or	CC
cord-002728-6oyw5sqv	17	31	microbial	microbial	JJ
cord-002728-6oyw5sqv	17	32	imbalance	imbalance	NN
cord-002728-6oyw5sqv	17	33	(	(	-LRB-
cord-002728-6oyw5sqv	17	34	dysbiosis	dysbiosis	NN
cord-002728-6oyw5sqv	17	35	)	)	-RRB-
cord-002728-6oyw5sqv	17	36	,	,	,
cord-002728-6oyw5sqv	17	37	and	and	CC
cord-002728-6oyw5sqv	17	38	the	the	DT
cord-002728-6oyw5sqv	17	39	development	development	NN
cord-002728-6oyw5sqv	17	40	of	of	IN
cord-002728-6oyw5sqv	17	41	chronic	chronic	JJ
cord-002728-6oyw5sqv	17	42	infectious	infectious	JJ
cord-002728-6oyw5sqv	17	43	and	and	CC
cord-002728-6oyw5sqv	17	44	autoimmune	autoimmune	JJ
cord-002728-6oyw5sqv	17	45	diseases	disease	NNS
cord-002728-6oyw5sqv	17	46	including	include	VBG
cord-002728-6oyw5sqv	17	47	HIV	HIV	NNP
cord-002728-6oyw5sqv	17	48	infection	infection	NN
cord-002728-6oyw5sqv	17	49	and	and	CC
cord-002728-6oyw5sqv	17	50	Crohn	Crohn	NNP
cord-002728-6oyw5sqv	17	51	's	's	POS
cord-002728-6oyw5sqv	17	52	disease	disease	NN
cord-002728-6oyw5sqv	17	53	,	,	,
cord-002728-6oyw5sqv	17	54	respectively	respectively	RB
cord-002728-6oyw5sqv	17	55	.	.	.
cord-002728-6oyw5sqv	18	1	CONCLUSIONS	conclusion	NNS
cord-002728-6oyw5sqv	18	2	:	:	:
cord-002728-6oyw5sqv	19	1	Our	-PRON-	PRP$
cord-002728-6oyw5sqv	19	2	understanding	understanding	NN
cord-002728-6oyw5sqv	19	3	of	of	IN
cord-002728-6oyw5sqv	19	4	the	the	DT
cord-002728-6oyw5sqv	19	5	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	19	6	virome	virome	NN
cord-002728-6oyw5sqv	19	7	is	be	VBZ
cord-002728-6oyw5sqv	19	8	fragmented	fragmented	JJ
cord-002728-6oyw5sqv	19	9	and	and	CC
cord-002728-6oyw5sqv	19	10	requires	require	VBZ
cord-002728-6oyw5sqv	19	11	standardised	standardised	JJ
cord-002728-6oyw5sqv	19	12	methods	method	NNS
cord-002728-6oyw5sqv	19	13	for	for	IN
cord-002728-6oyw5sqv	19	14	virus	virus	NN
cord-002728-6oyw5sqv	19	15	isolation	isolation	NN
cord-002728-6oyw5sqv	19	16	and	and	CC
cord-002728-6oyw5sqv	19	17	sequencing	sequencing	NN
cord-002728-6oyw5sqv	19	18	to	to	TO
cord-002728-6oyw5sqv	19	19	provide	provide	VB
cord-002728-6oyw5sqv	19	20	a	a	DT
cord-002728-6oyw5sqv	19	21	more	more	RBR
cord-002728-6oyw5sqv	19	22	complete	complete	JJ
cord-002728-6oyw5sqv	19	23	picture	picture	NN
cord-002728-6oyw5sqv	19	24	of	of	IN
cord-002728-6oyw5sqv	19	25	the	the	DT
cord-002728-6oyw5sqv	19	26	virome	virome	NN
cord-002728-6oyw5sqv	19	27	,	,	,
cord-002728-6oyw5sqv	19	28	which	which	WDT
cord-002728-6oyw5sqv	19	29	is	be	VBZ
cord-002728-6oyw5sqv	19	30	key	key	JJ
cord-002728-6oyw5sqv	19	31	to	to	IN
cord-002728-6oyw5sqv	19	32	explaining	explain	VBG
cord-002728-6oyw5sqv	19	33	the	the	DT
cord-002728-6oyw5sqv	19	34	basis	basis	NN
cord-002728-6oyw5sqv	19	35	of	of	IN
cord-002728-6oyw5sqv	19	36	virome‐disease	virome‐disease	JJ
cord-002728-6oyw5sqv	19	37	associations	association	NNS
cord-002728-6oyw5sqv	19	38	,	,	,
cord-002728-6oyw5sqv	19	39	and	and	CC
cord-002728-6oyw5sqv	19	40	how	how	WRB
cord-002728-6oyw5sqv	19	41	enteric	enteric	JJ
cord-002728-6oyw5sqv	19	42	viruses	virus	NNS
cord-002728-6oyw5sqv	19	43	can	can	MD
cord-002728-6oyw5sqv	19	44	contribute	contribute	VB
cord-002728-6oyw5sqv	19	45	to	to	IN
cord-002728-6oyw5sqv	19	46	disease	disease	NN
cord-002728-6oyw5sqv	19	47	aetiologies	aetiology	NNS
cord-002728-6oyw5sqv	19	48	and	and	CC
cord-002728-6oyw5sqv	19	49	be	be	VB
cord-002728-6oyw5sqv	19	50	rationalised	rationalise	VBN
cord-002728-6oyw5sqv	19	51	as	as	IN
cord-002728-6oyw5sqv	19	52	targets	target	NNS
cord-002728-6oyw5sqv	19	53	for	for	IN
cord-002728-6oyw5sqv	19	54	interventions	intervention	NNS
cord-002728-6oyw5sqv	19	55	.	.	.
cord-002728-6oyw5sqv	20	1	Viruses	virus	NNS
cord-002728-6oyw5sqv	20	2	are	be	VBP
cord-002728-6oyw5sqv	20	3	thought	think	VBN
cord-002728-6oyw5sqv	20	4	to	to	TO
cord-002728-6oyw5sqv	20	5	be	be	VB
cord-002728-6oyw5sqv	20	6	the	the	DT
cord-002728-6oyw5sqv	20	7	most	most	RBS
cord-002728-6oyw5sqv	20	8	abundant	abundant	JJ
cord-002728-6oyw5sqv	20	9	and	and	CC
cord-002728-6oyw5sqv	20	10	diverse	diverse	JJ
cord-002728-6oyw5sqv	20	11	entities	entity	NNS
cord-002728-6oyw5sqv	20	12	on	on	IN
cord-002728-6oyw5sqv	20	13	Earth	Earth	NNP
cord-002728-6oyw5sqv	20	14	,	,	,
cord-002728-6oyw5sqv	20	15	numbering	number	VBG
cord-002728-6oyw5sqv	20	16	as	as	RB
cord-002728-6oyw5sqv	20	17	many	many	JJ
cord-002728-6oyw5sqv	20	18	as	as	IN
cord-002728-6oyw5sqv	20	19	10	10	CD
cord-002728-6oyw5sqv	20	20	31	31	CD
cord-002728-6oyw5sqv	20	21	virus	virus	NN
cord-002728-6oyw5sqv	20	22	-	-	HYPH
cord-002728-6oyw5sqv	20	23	like	like	JJ
cord-002728-6oyw5sqv	20	24	particles	particle	NNS
cord-002728-6oyw5sqv	20	25	(	(	-LRB-
cord-002728-6oyw5sqv	20	26	VLPs	VLPs	NNP
cord-002728-6oyw5sqv	20	27	)	)	-RRB-
cord-002728-6oyw5sqv	20	28	,	,	,
cord-002728-6oyw5sqv	20	29	1	1	CD
cord-002728-6oyw5sqv	20	30	though	though	IN
cord-002728-6oyw5sqv	20	31	this	this	DT
cord-002728-6oyw5sqv	20	32	paradigm	paradigm	NN
cord-002728-6oyw5sqv	20	33	is	be	VBZ
cord-002728-6oyw5sqv	20	34	likely	likely	JJ
cord-002728-6oyw5sqv	20	35	to	to	TO
cord-002728-6oyw5sqv	20	36	change	change	VB
cord-002728-6oyw5sqv	20	37	in	in	IN
cord-002728-6oyw5sqv	20	38	light	light	NN
cord-002728-6oyw5sqv	20	39	of	of	IN
cord-002728-6oyw5sqv	20	40	information	information	NN
cord-002728-6oyw5sqv	20	41	from	from	IN
cord-002728-6oyw5sqv	20	42	large	large	JJ
cord-002728-6oyw5sqv	20	43	-	-	HYPH
cord-002728-6oyw5sqv	20	44	scale	scale	NN
cord-002728-6oyw5sqv	20	45	sequencing	sequencing	NN
cord-002728-6oyw5sqv	20	46	surveys	survey	NNS
cord-002728-6oyw5sqv	20	47	of	of	IN
cord-002728-6oyw5sqv	20	48	marine	marine	JJ
cord-002728-6oyw5sqv	20	49	environments	environment	NNS
cord-002728-6oyw5sqv	20	50	and	and	CC
cord-002728-6oyw5sqv	20	51	improved	improve	VBN
cord-002728-6oyw5sqv	20	52	analytical	analytical	JJ
cord-002728-6oyw5sqv	20	53	tools	tool	NNS
cord-002728-6oyw5sqv	20	54	.	.	.
cord-002728-6oyw5sqv	21	1	2	2	LS
cord-002728-6oyw5sqv	22	1	With	with	IN
cord-002728-6oyw5sqv	22	2	the	the	DT
cord-002728-6oyw5sqv	22	3	advent	advent	NN
cord-002728-6oyw5sqv	22	4	of	of	IN
cord-002728-6oyw5sqv	22	5	new	new	JJ
cord-002728-6oyw5sqv	22	6	,	,	,
cord-002728-6oyw5sqv	22	7	sequence	sequence	NN
cord-002728-6oyw5sqv	22	8	-	-	HYPH
cord-002728-6oyw5sqv	22	9	based	base	VBN
cord-002728-6oyw5sqv	22	10	technologies	technology	NNS
cord-002728-6oyw5sqv	22	11	that	that	WDT
cord-002728-6oyw5sqv	22	12	do	do	VBP
cord-002728-6oyw5sqv	22	13	not	not	RB
cord-002728-6oyw5sqv	22	14	rely	rely	VB
cord-002728-6oyw5sqv	22	15	on	on	IN
cord-002728-6oyw5sqv	22	16	the	the	DT
cord-002728-6oyw5sqv	22	17	ability	ability	NN
cord-002728-6oyw5sqv	22	18	to	to	TO
cord-002728-6oyw5sqv	22	19	isolate	isolate	VB
cord-002728-6oyw5sqv	22	20	viruses	virus	NNS
cord-002728-6oyw5sqv	22	21	for	for	IN
cord-002728-6oyw5sqv	22	22	their	-PRON-	PRP$
cord-002728-6oyw5sqv	22	23	identification	identification	NN
cord-002728-6oyw5sqv	22	24	,	,	,
cord-002728-6oyw5sqv	22	25	it	-PRON-	PRP
cord-002728-6oyw5sqv	22	26	is	be	VBZ
cord-002728-6oyw5sqv	22	27	now	now	RB
cord-002728-6oyw5sqv	22	28	possible	possible	JJ
cord-002728-6oyw5sqv	22	29	to	to	TO
cord-002728-6oyw5sqv	22	30	define	define	VB
cord-002728-6oyw5sqv	22	31	and	and	CC
cord-002728-6oyw5sqv	22	32	characterise	characterise	VB
cord-002728-6oyw5sqv	22	33	viruses	virus	NNS
cord-002728-6oyw5sqv	22	34	in	in	IN
cord-002728-6oyw5sqv	22	35	different	different	JJ
cord-002728-6oyw5sqv	22	36	environmental	environmental	JJ
cord-002728-6oyw5sqv	22	37	samples	sample	NNS
cord-002728-6oyw5sqv	22	38	in	in	IN
cord-002728-6oyw5sqv	22	39	greater	great	JJR
cord-002728-6oyw5sqv	22	40	detail	detail	NN
cord-002728-6oyw5sqv	22	41	than	than	IN
cord-002728-6oyw5sqv	22	42	ever	ever	RB
cord-002728-6oyw5sqv	22	43	before	before	RB
cord-002728-6oyw5sqv	22	44	,	,	,
cord-002728-6oyw5sqv	22	45	which	which	WDT
cord-002728-6oyw5sqv	22	46	has	have	VBZ
cord-002728-6oyw5sqv	22	47	resulted	result	VBN
cord-002728-6oyw5sqv	22	48	in	in	IN
cord-002728-6oyw5sqv	22	49	an	an	DT
cord-002728-6oyw5sqv	22	50	increased	increase	VBN
cord-002728-6oyw5sqv	22	51	interest	interest	NN
cord-002728-6oyw5sqv	22	52	in	in	IN
cord-002728-6oyw5sqv	22	53	the	the	DT
cord-002728-6oyw5sqv	22	54	role	role	NN
cord-002728-6oyw5sqv	23	1	the	the	DT
cord-002728-6oyw5sqv	23	2	viral	viral	JJ
cord-002728-6oyw5sqv	23	3	assemblage	assemblage	NN
cord-002728-6oyw5sqv	23	4	of	of	IN
cord-002728-6oyw5sqv	23	5	the	the	DT
cord-002728-6oyw5sqv	23	6	human	human	JJ
cord-002728-6oyw5sqv	23	7	gut	gut	NN
cord-002728-6oyw5sqv	23	8	microbiota	microbiota	NN
cord-002728-6oyw5sqv	23	9	plays	play	NNS
cord-002728-6oyw5sqv	23	10	in	in	IN
cord-002728-6oyw5sqv	23	11	health	health	NN
cord-002728-6oyw5sqv	23	12	and	and	CC
cord-002728-6oyw5sqv	23	13	disease	disease	NN
cord-002728-6oyw5sqv	23	14	.	.	.
cord-002728-6oyw5sqv	24	1	The	the	DT
cord-002728-6oyw5sqv	24	2	following	follow	VBG
cord-002728-6oyw5sqv	24	3	reviews	review	NNS
cord-002728-6oyw5sqv	24	4	our	-PRON-	PRP$
cord-002728-6oyw5sqv	24	5	current	current	JJ
cord-002728-6oyw5sqv	24	6	knowledge	knowledge	NN
cord-002728-6oyw5sqv	24	7	on	on	IN
cord-002728-6oyw5sqv	24	8	the	the	DT
cord-002728-6oyw5sqv	24	9	human	human	JJ
cord-002728-6oyw5sqv	24	10	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	24	11	virome	virome	NN
cord-002728-6oyw5sqv	24	12	.	.	.
cord-002728-6oyw5sqv	25	1	A	a	DT
cord-002728-6oyw5sqv	25	2	virome	virome	NN
cord-002728-6oyw5sqv	25	3	comprises	comprise	VBZ
cord-002728-6oyw5sqv	25	4	all	all	PDT
cord-002728-6oyw5sqv	25	5	the	the	DT
cord-002728-6oyw5sqv	25	6	nucleic	nucleic	JJ
cord-002728-6oyw5sqv	25	7	acids	acid	NNS
cord-002728-6oyw5sqv	25	8	(	(	-LRB-
cord-002728-6oyw5sqv	25	9	ssDNA	ssdna	RB
cord-002728-6oyw5sqv	25	10	,	,	,
cord-002728-6oyw5sqv	25	11	dsDNA	dsdna	RB
cord-002728-6oyw5sqv	25	12	,	,	,
cord-002728-6oyw5sqv	25	13	ssRNA	ssrna	NN
cord-002728-6oyw5sqv	25	14	and	and	CC
cord-002728-6oyw5sqv	25	15	dsRNA	dsrna	NN
cord-002728-6oyw5sqv	25	16	)	)	-RRB-
cord-002728-6oyw5sqv	25	17	belonging	belong	VBG
cord-002728-6oyw5sqv	25	18	to	to	IN
cord-002728-6oyw5sqv	25	19	the	the	DT
cord-002728-6oyw5sqv	25	20	VLPs	vlp	NNS
cord-002728-6oyw5sqv	25	21	associated	associate	VBN
cord-002728-6oyw5sqv	25	22	with	with	IN
cord-002728-6oyw5sqv	25	23	a	a	DT
cord-002728-6oyw5sqv	25	24	particular	particular	JJ
cord-002728-6oyw5sqv	25	25	ecosystem	ecosystem	NN
cord-002728-6oyw5sqv	25	26	.	.	.
cord-002728-6oyw5sqv	26	1	The	the	DT
cord-002728-6oyw5sqv	26	2	human	human	JJ
cord-002728-6oyw5sqv	26	3	virome	virome	NN
cord-002728-6oyw5sqv	26	4	is	be	VBZ
cord-002728-6oyw5sqv	26	5	a	a	DT
cord-002728-6oyw5sqv	26	6	genetically	genetically	RB
cord-002728-6oyw5sqv	26	7	complex	complex	JJ
cord-002728-6oyw5sqv	26	8	component	component	NN
cord-002728-6oyw5sqv	26	9	of	of	IN
cord-002728-6oyw5sqv	26	10	the	the	DT
cord-002728-6oyw5sqv	26	11	microbiome	microbiome	NN
cord-002728-6oyw5sqv	26	12	,	,	,
cord-002728-6oyw5sqv	26	13	with	with	IN
cord-002728-6oyw5sqv	26	14	the	the	DT
cord-002728-6oyw5sqv	26	15	blood	blood	NN
cord-002728-6oyw5sqv	26	16	,	,	,
cord-002728-6oyw5sqv	26	17	nose	nose	NN
cord-002728-6oyw5sqv	26	18	,	,	,
cord-002728-6oyw5sqv	26	19	skin	skin	NN
cord-002728-6oyw5sqv	26	20	,	,	,
cord-002728-6oyw5sqv	26	21	conjunctiva	conjunctiva	NN
cord-002728-6oyw5sqv	26	22	,	,	,
cord-002728-6oyw5sqv	26	23	mouth	mouth	NN
cord-002728-6oyw5sqv	26	24	,	,	,
cord-002728-6oyw5sqv	26	25	vagina	vagina	NN
cord-002728-6oyw5sqv	26	26	,	,	,
cord-002728-6oyw5sqv	26	27	lungs	lung	NNS
cord-002728-6oyw5sqv	26	28	and	and	CC
cord-002728-6oyw5sqv	26	29	gastrointestinal	gastrointestinal	JJ
cord-002728-6oyw5sqv	26	30	(	(	-LRB-
cord-002728-6oyw5sqv	26	31	GI	GI	NNP
cord-002728-6oyw5sqv	26	32	)	)	-RRB-
cord-002728-6oyw5sqv	26	33	tract	tract	NN
cord-002728-6oyw5sqv	26	34	harbouring	harbour	VBG
cord-002728-6oyw5sqv	26	35	their	-PRON-	PRP$
cord-002728-6oyw5sqv	26	36	own	own	JJ
cord-002728-6oyw5sqv	26	37	distinct	distinct	JJ
cord-002728-6oyw5sqv	26	38	virus	virus	NN
cord-002728-6oyw5sqv	26	39	assemblages	assemblage	NNS
cord-002728-6oyw5sqv	26	40	(	(	-LRB-
cord-002728-6oyw5sqv	26	41	Table	Table	NNP
cord-002728-6oyw5sqv	26	42	S1	S1	NNP
cord-002728-6oyw5sqv	26	43	)	)	-RRB-
cord-002728-6oyw5sqv	26	44	.	.	.
cord-002728-6oyw5sqv	27	1	The	the	DT
cord-002728-6oyw5sqv	27	2	genetic	genetic	JJ
cord-002728-6oyw5sqv	27	3	content	content	NN
cord-002728-6oyw5sqv	27	4	of	of	IN
cord-002728-6oyw5sqv	27	5	VLPs	vlp	NNS
cord-002728-6oyw5sqv	27	6	comprising	comprise	VBG
cord-002728-6oyw5sqv	27	7	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	27	8	(	(	-LRB-
cord-002728-6oyw5sqv	27	9	phages	phage	NNS
cord-002728-6oyw5sqv	27	10	)	)	-RRB-
cord-002728-6oyw5sqv	27	11	that	that	WDT
cord-002728-6oyw5sqv	27	12	infect	infect	VBP
cord-002728-6oyw5sqv	27	13	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	27	14	and	and	CC
cord-002728-6oyw5sqv	27	15	archaea	archaea	NNS
cord-002728-6oyw5sqv	27	16	and	and	CC
cord-002728-6oyw5sqv	27	17	,	,	,
cord-002728-6oyw5sqv	27	18	to	to	IN
cord-002728-6oyw5sqv	27	19	a	a	DT
cord-002728-6oyw5sqv	27	20	much	much	RB
cord-002728-6oyw5sqv	27	21	lesser	less	JJR
cord-002728-6oyw5sqv	27	22	extent	extent	NN
cord-002728-6oyw5sqv	27	23	,	,	,
cord-002728-6oyw5sqv	27	24	human-	human-	NN
cord-002728-6oyw5sqv	27	25	,	,	,
cord-002728-6oyw5sqv	27	26	plant-	plant-	JJ
cord-002728-6oyw5sqv	27	27	,	,	,
cord-002728-6oyw5sqv	27	28	amoebae	amoebae	NN
cord-002728-6oyw5sqv	27	29	-	-	HYPH
cord-002728-6oyw5sqv	27	30	and	and	CC
cord-002728-6oyw5sqv	27	31	animal	animal	NN
cord-002728-6oyw5sqv	27	32	-	-	HYPH
cord-002728-6oyw5sqv	27	33	infecting	infect	VBG
cord-002728-6oyw5sqv	27	34	viruses	virus	NNS
cord-002728-6oyw5sqv	27	35	found	find	VBN
cord-002728-6oyw5sqv	27	36	along	along	IN
cord-002728-6oyw5sqv	27	37	the	the	DT
cord-002728-6oyw5sqv	27	38	GI	GI	NNP
cord-002728-6oyw5sqv	27	39	tract	tract	NN
cord-002728-6oyw5sqv	27	40	constitute	constitute	VBP
cord-002728-6oyw5sqv	27	41	the	the	DT
cord-002728-6oyw5sqv	27	42	human	human	JJ
cord-002728-6oyw5sqv	27	43	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	27	44	virome	virome	NN
cord-002728-6oyw5sqv	27	45	(	(	-LRB-
cord-002728-6oyw5sqv	27	46	Figure	figure	NN
cord-002728-6oyw5sqv	27	47	1	1	CD
cord-002728-6oyw5sqv	27	48	)	)	-RRB-
cord-002728-6oyw5sqv	27	49	.	.	.
cord-002728-6oyw5sqv	28	1	Phages	phage	NNS
cord-002728-6oyw5sqv	28	2	can	can	MD
cord-002728-6oyw5sqv	28	3	be	be	VB
cord-002728-6oyw5sqv	28	4	lytic	lytic	JJ
cord-002728-6oyw5sqv	28	5	or	or	CC
cord-002728-6oyw5sqv	28	6	lysogenic	lysogenic	JJ
cord-002728-6oyw5sqv	28	7	.	.	.
cord-002728-6oyw5sqv	29	1	Lytic	lytic	JJ
cord-002728-6oyw5sqv	29	2	(	(	-LRB-
cord-002728-6oyw5sqv	29	3	virulent	virulent	JJ
cord-002728-6oyw5sqv	29	4	)	)	-RRB-
cord-002728-6oyw5sqv	29	5	phages	phage	NNS
cord-002728-6oyw5sqv	29	6	bind	bind	VBP
cord-002728-6oyw5sqv	29	7	to	to	IN
cord-002728-6oyw5sqv	29	8	specific	specific	JJ
cord-002728-6oyw5sqv	29	9	host	host	NN
cord-002728-6oyw5sqv	29	10	-	-	HYPH
cord-002728-6oyw5sqv	29	11	cell	cell	NN
cord-002728-6oyw5sqv	29	12	receptors	receptor	NNS
cord-002728-6oyw5sqv	29	13	,	,	,
cord-002728-6oyw5sqv	29	14	then	then	RB
cord-002728-6oyw5sqv	29	15	penetrate	penetrate	VB
cord-002728-6oyw5sqv	29	16	and	and	CC
cord-002728-6oyw5sqv	29	17	infect	infect	VB
cord-002728-6oyw5sqv	29	18	their	-PRON-	PRP$
cord-002728-6oyw5sqv	29	19	host	host	NN
cord-002728-6oyw5sqv	29	20	cell	cell	NN
cord-002728-6oyw5sqv	29	21	to	to	TO
cord-002728-6oyw5sqv	29	22	hijack	hijack	VB
cord-002728-6oyw5sqv	29	23	its	-PRON-	PRP$
cord-002728-6oyw5sqv	29	24	replication	replication	NN
cord-002728-6oyw5sqv	29	25	and	and	CC
cord-002728-6oyw5sqv	29	26	translation	translation	NN
cord-002728-6oyw5sqv	29	27	machinery	machinery	NN
cord-002728-6oyw5sqv	29	28	to	to	TO
cord-002728-6oyw5sqv	29	29	produce	produce	VB
cord-002728-6oyw5sqv	29	30	virions	virion	NNS
cord-002728-6oyw5sqv	29	31	;	;	:
cord-002728-6oyw5sqv	29	32	once	once	IN
cord-002728-6oyw5sqv	29	33	sufficient	sufficient	JJ
cord-002728-6oyw5sqv	29	34	virions	virion	NNS
cord-002728-6oyw5sqv	29	35	have	have	VBP
cord-002728-6oyw5sqv	29	36	accumulated	accumulate	VBN
cord-002728-6oyw5sqv	29	37	(	(	-LRB-
cord-002728-6oyw5sqv	29	38	tens	ten	NNS
cord-002728-6oyw5sqv	29	39	to	to	IN
cord-002728-6oyw5sqv	29	40	thousands	thousand	NNS
cord-002728-6oyw5sqv	29	41	,	,	,
cord-002728-6oyw5sqv	29	42	depending	depend	VBG
cord-002728-6oyw5sqv	29	43	on	on	IN
cord-002728-6oyw5sqv	29	44	the	the	DT
cord-002728-6oyw5sqv	29	45	phage	phage	NN
cord-002728-6oyw5sqv	29	46	)	)	-RRB-
cord-002728-6oyw5sqv	30	1	,	,	,
cord-002728-6oyw5sqv	30	2	the	the	DT
cord-002728-6oyw5sqv	30	3	lytic	lytic	JJ
cord-002728-6oyw5sqv	30	4	enzymes	enzyme	NNS
cord-002728-6oyw5sqv	30	5	they	-PRON-	PRP
cord-002728-6oyw5sqv	30	6	produce	produce	VBP
cord-002728-6oyw5sqv	30	7	cause	cause	VB
cord-002728-6oyw5sqv	30	8	the	the	DT
cord-002728-6oyw5sqv	30	9	host	host	NN
cord-002728-6oyw5sqv	30	10	cell	cell	NN
cord-002728-6oyw5sqv	30	11	to	to	TO
cord-002728-6oyw5sqv	30	12	lyse	lyse	VB
cord-002728-6oyw5sqv	30	13	,	,	,
cord-002728-6oyw5sqv	30	14	releasing	release	VBG
cord-002728-6oyw5sqv	30	15	the	the	DT
cord-002728-6oyw5sqv	30	16	virions	virion	NNS
cord-002728-6oyw5sqv	30	17	into	into	IN
cord-002728-6oyw5sqv	30	18	the	the	DT
cord-002728-6oyw5sqv	30	19	surrounding	surround	VBG
cord-002728-6oyw5sqv	30	20	environment	environment	NN
cord-002728-6oyw5sqv	30	21	where	where	WRB
cord-002728-6oyw5sqv	30	22	they	-PRON-	PRP
cord-002728-6oyw5sqv	30	23	can	can	MD
cord-002728-6oyw5sqv	30	24	infect	infect	VB
cord-002728-6oyw5sqv	30	25	new	new	JJ
cord-002728-6oyw5sqv	30	26	host	host	NN
cord-002728-6oyw5sqv	30	27	cells	cell	NNS
cord-002728-6oyw5sqv	30	28	.	.	.
cord-002728-6oyw5sqv	31	1	Lytic	lytic	JJ
cord-002728-6oyw5sqv	31	2	phages	phage	NNS
cord-002728-6oyw5sqv	31	3	can	can	MD
cord-002728-6oyw5sqv	31	4	have	have	VB
cord-002728-6oyw5sqv	31	5	narrow	narrow	JJ
cord-002728-6oyw5sqv	31	6	or	or	CC
cord-002728-6oyw5sqv	31	7	broad	broad	JJ
cord-002728-6oyw5sqv	31	8	host	host	NN
cord-002728-6oyw5sqv	31	9	ranges	range	NNS
cord-002728-6oyw5sqv	31	10	,	,	,
cord-002728-6oyw5sqv	31	11	infecting	infect	VBG
cord-002728-6oyw5sqv	31	12	only	only	RB
cord-002728-6oyw5sqv	31	13	one	one	CD
cord-002728-6oyw5sqv	31	14	strain	strain	NN
cord-002728-6oyw5sqv	31	15	of	of	IN
cord-002728-6oyw5sqv	31	16	a	a	DT
cord-002728-6oyw5sqv	31	17	prokaryote	prokaryote	NN
cord-002728-6oyw5sqv	31	18	or	or	CC
cord-002728-6oyw5sqv	31	19	multiple	multiple	JJ
cord-002728-6oyw5sqv	31	20	species	specie	NNS
cord-002728-6oyw5sqv	31	21	of	of	IN
cord-002728-6oyw5sqv	31	22	closely	closely	RB
cord-002728-6oyw5sqv	31	23	related	related	JJ
cord-002728-6oyw5sqv	31	24	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	31	25	.	.	.
cord-002728-6oyw5sqv	32	1	These	these	DT
cord-002728-6oyw5sqv	32	2	entities	entity	NNS
cord-002728-6oyw5sqv	32	3	have	have	VBP
cord-002728-6oyw5sqv	32	4	been	be	VBN
cord-002728-6oyw5sqv	32	5	used	use	VBN
cord-002728-6oyw5sqv	32	6	in	in	IN
cord-002728-6oyw5sqv	32	7	the	the	DT
cord-002728-6oyw5sqv	32	8	past	past	NN
cord-002728-6oyw5sqv	32	9	to	to	TO
cord-002728-6oyw5sqv	32	10	treat	treat	VB
cord-002728-6oyw5sqv	32	11	infections	infection	NNS
cord-002728-6oyw5sqv	32	12	,	,	,
cord-002728-6oyw5sqv	32	13	and	and	CC
cord-002728-6oyw5sqv	32	14	have	have	VBP
cord-002728-6oyw5sqv	32	15	recently	recently	RB
cord-002728-6oyw5sqv	32	16	been	be	VBN
cord-002728-6oyw5sqv	32	17	revisited	revisit	VBN
cord-002728-6oyw5sqv	32	18	as	as	IN
cord-002728-6oyw5sqv	32	19	alternatives	alternative	NNS
cord-002728-6oyw5sqv	32	20	to	to	IN
cord-002728-6oyw5sqv	32	21	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	32	22	therapies	therapy	NNS
cord-002728-6oyw5sqv	32	23	for	for	IN
cord-002728-6oyw5sqv	32	24	a	a	DT
cord-002728-6oyw5sqv	32	25	range	range	NN
cord-002728-6oyw5sqv	32	26	of	of	IN
cord-002728-6oyw5sqv	32	27	infections	infection	NNS
cord-002728-6oyw5sqv	32	28	and	and	CC
cord-002728-6oyw5sqv	32	29	as	as	IN
cord-002728-6oyw5sqv	32	30	means	mean	NNS
cord-002728-6oyw5sqv	32	31	of	of	IN
cord-002728-6oyw5sqv	32	32	controlling	control	VBG
cord-002728-6oyw5sqv	32	33	food	food	NN
cord-002728-6oyw5sqv	32	34	-	-	HYPH
cord-002728-6oyw5sqv	32	35	contaminating	contaminate	VBG
cord-002728-6oyw5sqv	32	36	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	32	37	such	such	JJ
cord-002728-6oyw5sqv	32	38	as	as	IN
cord-002728-6oyw5sqv	32	39	Listeria	Listeria	NNP
cord-002728-6oyw5sqv	32	40	spp	spp	NNP
cord-002728-6oyw5sqv	32	41	.	.	.
cord-002728-6oyw5sqv	33	1	3	3	LS
cord-002728-6oyw5sqv	34	1	Their	-PRON-	PRP$
cord-002728-6oyw5sqv	34	2	gene	gene	NN
cord-002728-6oyw5sqv	34	3	products	product	NNS
cord-002728-6oyw5sqv	34	4	are	be	VBP
cord-002728-6oyw5sqv	34	5	also	also	RB
cord-002728-6oyw5sqv	34	6	of	of	IN
cord-002728-6oyw5sqv	34	7	interest	interest	NN
cord-002728-6oyw5sqv	34	8	in	in	IN
cord-002728-6oyw5sqv	34	9	biotechnological	biotechnological	JJ
cord-002728-6oyw5sqv	34	10	and	and	CC
cord-002728-6oyw5sqv	34	11	medical	medical	JJ
cord-002728-6oyw5sqv	34	12	applications	application	NNS
cord-002728-6oyw5sqv	34	13	.	.	.
cord-002728-6oyw5sqv	35	1	4	4	LS
cord-002728-6oyw5sqv	36	1	The	the	DT
cord-002728-6oyw5sqv	36	2	mammalian	mammalian	JJ
cord-002728-6oyw5sqv	36	3	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	36	4	virome	virome	NN
cord-002728-6oyw5sqv	36	5	comprises	comprise	VBZ
cord-002728-6oyw5sqv	36	6	viruses	virus	NNS
cord-002728-6oyw5sqv	36	7	that	that	WDT
cord-002728-6oyw5sqv	36	8	infect	infect	VBP
cord-002728-6oyw5sqv	36	9	eukaryotic	eukaryotic	JJ
cord-002728-6oyw5sqv	36	10	and	and	CC
cord-002728-6oyw5sqv	36	11	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	36	12	cells	cell	NNS
cord-002728-6oyw5sqv	36	13	.	.	.
cord-002728-6oyw5sqv	37	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	37	2	is	be	VBZ
cord-002728-6oyw5sqv	37	3	established	establish	VBN
cord-002728-6oyw5sqv	37	4	soon	soon	RB
cord-002728-6oyw5sqv	37	5	after	after	IN
cord-002728-6oyw5sqv	37	6	birth	birth	NN
cord-002728-6oyw5sqv	37	7	and	and	CC
cord-002728-6oyw5sqv	37	8	is	be	VBZ
cord-002728-6oyw5sqv	37	9	dominated	dominate	VBN
cord-002728-6oyw5sqv	37	10	by	by	IN
cord-002728-6oyw5sqv	37	11	viruses	virus	NNS
cord-002728-6oyw5sqv	37	12	that	that	WDT
cord-002728-6oyw5sqv	37	13	infect	infect	VBP
cord-002728-6oyw5sqv	37	14	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	37	15	(	(	-LRB-
cord-002728-6oyw5sqv	37	16	ie	ie	NNS
cord-002728-6oyw5sqv	37	17	,	,	,
cord-002728-6oyw5sqv	37	18	phages	phage	NNS
cord-002728-6oyw5sqv	37	19	)	)	-RRB-
cord-002728-6oyw5sqv	37	20	.	.	.
cord-002728-6oyw5sqv	38	1	The	the	DT
cord-002728-6oyw5sqv	38	2	virome	virome	NN
cord-002728-6oyw5sqv	38	3	establishes	establish	VBZ
cord-002728-6oyw5sqv	38	4	a	a	DT
cord-002728-6oyw5sqv	38	5	mutualistic	mutualistic	JJ
cord-002728-6oyw5sqv	38	6	relationship	relationship	NN
cord-002728-6oyw5sqv	38	7	with	with	IN
cord-002728-6oyw5sqv	38	8	eukaryotes	eukaryote	NNS
cord-002728-6oyw5sqv	38	9	/	/	SYM
cord-002728-6oyw5sqv	38	10	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	38	11	,	,	,
cord-002728-6oyw5sqv	38	12	contributing	contribute	VBG
cord-002728-6oyw5sqv	38	13	to	to	IN
cord-002728-6oyw5sqv	38	14	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	38	15	homeostasis	homeostasis	NN
cord-002728-6oyw5sqv	38	16	by	by	IN
cord-002728-6oyw5sqv	38	17	influencing	influence	VBG
cord-002728-6oyw5sqv	38	18	microbial	microbial	JJ
cord-002728-6oyw5sqv	38	19	ecology	ecology	NN
cord-002728-6oyw5sqv	38	20	and	and	CC
cord-002728-6oyw5sqv	38	21	host	host	NN
cord-002728-6oyw5sqv	38	22	immunity	immunity	NN
cord-002728-6oyw5sqv	38	23	.	.	.
cord-002728-6oyw5sqv	39	1	Composition	composition	NN
cord-002728-6oyw5sqv	39	2	of	of	IN
cord-002728-6oyw5sqv	39	3	the	the	DT
cord-002728-6oyw5sqv	39	4	virome	virome	NN
cord-002728-6oyw5sqv	39	5	is	be	VBZ
cord-002728-6oyw5sqv	39	6	influenced	influence	VBN
cord-002728-6oyw5sqv	39	7	by	by	IN
cord-002728-6oyw5sqv	39	8	numerous	numerous	JJ
cord-002728-6oyw5sqv	39	9	factors	factor	NNS
cord-002728-6oyw5sqv	39	10	that	that	WDT
cord-002728-6oyw5sqv	39	11	affect	affect	VBP
cord-002728-6oyw5sqv	39	12	viruses	virus	NNS
cord-002728-6oyw5sqv	39	13	directly	directly	RB
cord-002728-6oyw5sqv	39	14	(	(	-LRB-
cord-002728-6oyw5sqv	39	15	infection	infection	NN
cord-002728-6oyw5sqv	39	16	)	)	-RRB-
cord-002728-6oyw5sqv	39	17	or	or	CC
cord-002728-6oyw5sqv	39	18	change	change	VB
cord-002728-6oyw5sqv	39	19	host	host	NN
cord-002728-6oyw5sqv	39	20	-	-	HYPH
cord-002728-6oyw5sqv	39	21	cell	cell	NN
cord-002728-6oyw5sqv	39	22	populations	population	NNS
cord-002728-6oyw5sqv	39	23	(	(	-LRB-
cord-002728-6oyw5sqv	39	24	eg	eg	RB
cord-002728-6oyw5sqv	39	25	,	,	,
cord-002728-6oyw5sqv	39	26	antibiotics	antibiotic	NNS
cord-002728-6oyw5sqv	39	27	,	,	,
cord-002728-6oyw5sqv	39	28	diet	diet	NN
cord-002728-6oyw5sqv	39	29	)	)	-RRB-
cord-002728-6oyw5sqv	39	30	.	.	.
cord-002728-6oyw5sqv	40	1	Members	member	NNS
cord-002728-6oyw5sqv	40	2	of	of	IN
cord-002728-6oyw5sqv	40	3	the	the	DT
cord-002728-6oyw5sqv	40	4	virome	virome	NN
cord-002728-6oyw5sqv	40	5	may	may	MD
cord-002728-6oyw5sqv	40	6	contribute	contribute	VB
cord-002728-6oyw5sqv	40	7	to	to	IN
cord-002728-6oyw5sqv	40	8	the	the	DT
cord-002728-6oyw5sqv	40	9	pathogenesis	pathogenesis	NN
cord-002728-6oyw5sqv	40	10	of	of	IN
cord-002728-6oyw5sqv	40	11	certain	certain	JJ
cord-002728-6oyw5sqv	40	12	diseases	disease	NNS
cord-002728-6oyw5sqv	40	13	via	via	IN
cord-002728-6oyw5sqv	40	14	microbial	microbial	JJ
cord-002728-6oyw5sqv	40	15	host	host	NN
cord-002728-6oyw5sqv	40	16	lysis	lysis	NN
cord-002728-6oyw5sqv	40	17	leading	lead	VBG
cord-002728-6oyw5sqv	40	18	to	to	IN
cord-002728-6oyw5sqv	40	19	dysbiosis	dysbiosis	NN
cord-002728-6oyw5sqv	40	20	,	,	,
cord-002728-6oyw5sqv	40	21	infection	infection	NN
cord-002728-6oyw5sqv	40	22	of	of	IN
cord-002728-6oyw5sqv	40	23	epithelial	epithelial	JJ
cord-002728-6oyw5sqv	40	24	cells	cell	NNS
cord-002728-6oyw5sqv	40	25	,	,	,
cord-002728-6oyw5sqv	40	26	and/or	and/or	CC
cord-002728-6oyw5sqv	40	27	translocation	translocation	NN
cord-002728-6oyw5sqv	40	28	of	of	IN
cord-002728-6oyw5sqv	40	29	the	the	DT
cord-002728-6oyw5sqv	40	30	compromised	compromised	JJ
cord-002728-6oyw5sqv	40	31	or	or	CC
cord-002728-6oyw5sqv	40	32	damaged	damage	VBN
cord-002728-6oyw5sqv	40	33	mucosal	mucosal	JJ
cord-002728-6oyw5sqv	40	34	barrier	barrier	NN
cord-002728-6oyw5sqv	40	35	to	to	TO
cord-002728-6oyw5sqv	40	36	gain	gain	VB
cord-002728-6oyw5sqv	40	37	access	access	NN
cord-002728-6oyw5sqv	40	38	to	to	IN
cord-002728-6oyw5sqv	40	39	underlying	underlie	VBG
cord-002728-6oyw5sqv	40	40	tissues	tissue	NNS
cord-002728-6oyw5sqv	40	41	and	and	CC
cord-002728-6oyw5sqv	40	42	immune	immune	JJ
cord-002728-6oyw5sqv	40	43	cells	cell	NNS
cord-002728-6oyw5sqv	40	44	,	,	,
cord-002728-6oyw5sqv	40	45	leading	lead	VBG
cord-002728-6oyw5sqv	40	46	to	to	IN
cord-002728-6oyw5sqv	40	47	immune	immune	JJ
cord-002728-6oyw5sqv	40	48	activation	activation	NN
cord-002728-6oyw5sqv	40	49	.	.	.
cord-002728-6oyw5sqv	41	1	Dysbiosis	Dysbiosis	NNP
cord-002728-6oyw5sqv	41	2	can	can	MD
cord-002728-6oyw5sqv	41	3	be	be	VB
cord-002728-6oyw5sqv	41	4	defined	define	VBN
cord-002728-6oyw5sqv	41	5	as	as	IN
cord-002728-6oyw5sqv	41	6	a	a	DT
cord-002728-6oyw5sqv	41	7	microbial	microbial	JJ
cord-002728-6oyw5sqv	41	8	imbalance	imbalance	NN
cord-002728-6oyw5sqv	41	9	or	or	CC
cord-002728-6oyw5sqv	41	10	any	any	DT
cord-002728-6oyw5sqv	41	11	changes	change	NNS
cord-002728-6oyw5sqv	41	12	to	to	IN
cord-002728-6oyw5sqv	41	13	the	the	DT
cord-002728-6oyw5sqv	41	14	composition	composition	NN
cord-002728-6oyw5sqv	41	15	of	of	IN
cord-002728-6oyw5sqv	41	16	resident	resident	JJ
cord-002728-6oyw5sqv	41	17	microbial	microbial	JJ
cord-002728-6oyw5sqv	41	18	communities	community	NNS
cord-002728-6oyw5sqv	41	19	relative	relative	JJ
cord-002728-6oyw5sqv	41	20	to	to	IN
cord-002728-6oyw5sqv	41	21	the	the	DT
cord-002728-6oyw5sqv	41	22	community	community	NN
cord-002728-6oyw5sqv	41	23	found	find	VBN
cord-002728-6oyw5sqv	41	24	in	in	IN
cord-002728-6oyw5sqv	41	25	healthy	healthy	JJ
cord-002728-6oyw5sqv	41	26	individuals	individual	NNS
cord-002728-6oyw5sqv	41	27	.	.	.
cord-002728-6oyw5sqv	42	1	[	[	-LRB-
cord-002728-6oyw5sqv	42	2	101	101	CD
cord-002728-6oyw5sqv	42	3	]	]	-RRB-
cord-002728-6oyw5sqv	42	4	[	[	-LRB-
cord-002728-6oyw5sqv	42	5	102	102	CD
cord-002728-6oyw5sqv	42	6	]	]	-RRB-
cord-002728-6oyw5sqv	42	7	[	[	-LRB-
cord-002728-6oyw5sqv	42	8	103	103	CD
cord-002728-6oyw5sqv	42	9	]	]	-RRB-
cord-002728-6oyw5sqv	43	1	Virome	Virome	NNP
cord-002728-6oyw5sqv	43	2	association	association	NN
cord-002728-6oyw5sqv	43	3	with	with	IN
cord-002728-6oyw5sqv	43	4	certain	certain	JJ
cord-002728-6oyw5sqv	43	5	disease	disease	NN
cord-002728-6oyw5sqv	43	6	states	state	NNS
cord-002728-6oyw5sqv	43	7	is	be	VBZ
cord-002728-6oyw5sqv	43	8	characterised	characterise	VBN
cord-002728-6oyw5sqv	43	9	by	by	IN
cord-002728-6oyw5sqv	43	10	changes	change	NNS
cord-002728-6oyw5sqv	43	11	in	in	IN
cord-002728-6oyw5sqv	43	12	diversity	diversity	NN
cord-002728-6oyw5sqv	43	13	,	,	,
cord-002728-6oyw5sqv	43	14	and	and	CC
cord-002728-6oyw5sqv	43	15	predominance	predominance	NN
cord-002728-6oyw5sqv	43	16	of	of	IN
cord-002728-6oyw5sqv	43	17	specific	specific	JJ
cord-002728-6oyw5sqv	43	18	virotypes	virotype	NNS
cord-002728-6oyw5sqv	43	19	(	(	-LRB-
cord-002728-6oyw5sqv	43	20	eg	eg	UH
cord-002728-6oyw5sqv	43	21	,	,	,
cord-002728-6oyw5sqv	43	22	members	member	NNS
cord-002728-6oyw5sqv	43	23	of	of	IN
cord-002728-6oyw5sqv	43	24	the	the	DT
cord-002728-6oyw5sqv	43	25	order	order	NN
cord-002728-6oyw5sqv	43	26	Caudovirales	Caudovirales	NNP
cord-002728-6oyw5sqv	43	27	in	in	IN
cord-002728-6oyw5sqv	43	28	IBD	IBD	NNP
cord-002728-6oyw5sqv	43	29	)	)	-RRB-
cord-002728-6oyw5sqv	43	30	(	(	-LRB-
cord-002728-6oyw5sqv	43	31	temperate	temperate	JJ
cord-002728-6oyw5sqv	43	32	)	)	-RRB-
cord-002728-6oyw5sqv	43	33	phages	phage	NNS
cord-002728-6oyw5sqv	43	34	do	do	VBP
cord-002728-6oyw5sqv	43	35	not	not	RB
cord-002728-6oyw5sqv	43	36	kill	kill	VB
cord-002728-6oyw5sqv	43	37	their	-PRON-	PRP$
cord-002728-6oyw5sqv	43	38	host	host	NN
cord-002728-6oyw5sqv	43	39	but	but	CC
cord-002728-6oyw5sqv	43	40	instead	instead	RB
cord-002728-6oyw5sqv	43	41	integrate	integrate	VB
cord-002728-6oyw5sqv	43	42	into	into	IN
cord-002728-6oyw5sqv	43	43	their	-PRON-	PRP$
cord-002728-6oyw5sqv	43	44	host	host	NN
cord-002728-6oyw5sqv	43	45	's	's	POS
cord-002728-6oyw5sqv	43	46	genome	genome	NN
cord-002728-6oyw5sqv	43	47	without	without	IN
cord-002728-6oyw5sqv	43	48	interfering	interfere	VBG
cord-002728-6oyw5sqv	43	49	with	with	IN
cord-002728-6oyw5sqv	43	50	its	-PRON-	PRP$
cord-002728-6oyw5sqv	43	51	replication	replication	NN
cord-002728-6oyw5sqv	43	52	,	,	,
cord-002728-6oyw5sqv	43	53	incorporating	incorporate	VBG
cord-002728-6oyw5sqv	43	54	the	the	DT
cord-002728-6oyw5sqv	43	55	phage	phage	NN
cord-002728-6oyw5sqv	43	56	into	into	IN
cord-002728-6oyw5sqv	43	57	its	-PRON-	PRP$
cord-002728-6oyw5sqv	43	58	genome	genome	NN
cord-002728-6oyw5sqv	43	59	as	as	IN
cord-002728-6oyw5sqv	43	60	a	a	DT
cord-002728-6oyw5sqv	43	61	prophage	prophage	NN
cord-002728-6oyw5sqv	43	62	that	that	WDT
cord-002728-6oyw5sqv	43	63	is	be	VBZ
cord-002728-6oyw5sqv	43	64	transmitted	transmit	VBN
cord-002728-6oyw5sqv	43	65	to	to	IN
cord-002728-6oyw5sqv	43	66	its	-PRON-	PRP$
cord-002728-6oyw5sqv	43	67	progeny	progeny	NN
cord-002728-6oyw5sqv	43	68	at	at	IN
cord-002728-6oyw5sqv	43	69	each	each	DT
cord-002728-6oyw5sqv	43	70	cell	cell	NN
cord-002728-6oyw5sqv	43	71	division	division	NN
cord-002728-6oyw5sqv	43	72	.	.	.
cord-002728-6oyw5sqv	44	1	Lysogenic	Lysogenic	NNP
cord-002728-6oyw5sqv	44	2	phages	phage	NNS
cord-002728-6oyw5sqv	44	3	can	can	MD
cord-002728-6oyw5sqv	44	4	be	be	VB
cord-002728-6oyw5sqv	44	5	converted	convert	VBN
cord-002728-6oyw5sqv	44	6	to	to	IN
cord-002728-6oyw5sqv	44	7	a	a	DT
cord-002728-6oyw5sqv	44	8	lytic	lytic	JJ
cord-002728-6oyw5sqv	44	9	cycle	cycle	NN
cord-002728-6oyw5sqv	44	10	in	in	IN
cord-002728-6oyw5sqv	44	11	response	response	NN
cord-002728-6oyw5sqv	44	12	to	to	IN
cord-002728-6oyw5sqv	44	13	environmental	environmental	JJ
cord-002728-6oyw5sqv	44	14	stressors	stressor	NNS
cord-002728-6oyw5sqv	44	15	(	(	-LRB-
cord-002728-6oyw5sqv	44	16	eg	eg	RB
cord-002728-6oyw5sqv	44	17	,	,	,
cord-002728-6oyw5sqv	44	18	antibiotics	antibiotic	NNS
cord-002728-6oyw5sqv	44	19	)	)	-RRB-
cord-002728-6oyw5sqv	44	20	.	.	.
cord-002728-6oyw5sqv	45	1	Phage	phage	NN
cord-002728-6oyw5sqv	45	2	-	-	HYPH
cord-002728-6oyw5sqv	45	3	host	host	NN
cord-002728-6oyw5sqv	45	4	interactions	interaction	NNS
cord-002728-6oyw5sqv	45	5	influence	influence	VBP
cord-002728-6oyw5sqv	45	6	host	host	NN
cord-002728-6oyw5sqv	45	7	and	and	CC
cord-002728-6oyw5sqv	45	8	viral	viral	JJ
cord-002728-6oyw5sqv	45	9	evolution	evolution	NN
cord-002728-6oyw5sqv	45	10	.	.	.
cord-002728-6oyw5sqv	46	1	The	the	DT
cord-002728-6oyw5sqv	46	2	ability	ability	NN
cord-002728-6oyw5sqv	46	3	of	of	IN
cord-002728-6oyw5sqv	46	4	phages	phage	NNS
cord-002728-6oyw5sqv	46	5	to	to	TO
cord-002728-6oyw5sqv	46	6	transfer	transfer	VB
cord-002728-6oyw5sqv	46	7	genes	gene	NNS
cord-002728-6oyw5sqv	46	8	from	from	IN
cord-002728-6oyw5sqv	46	9	one	one	CD
cord-002728-6oyw5sqv	46	10	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	46	11	host	host	NN
cord-002728-6oyw5sqv	46	12	to	to	IN
cord-002728-6oyw5sqv	46	13	another	another	DT
cord-002728-6oyw5sqv	46	14	can	can	MD
cord-002728-6oyw5sqv	46	15	lead	lead	VB
cord-002728-6oyw5sqv	46	16	to	to	IN
cord-002728-6oyw5sqv	46	17	increased	increase	VBN
cord-002728-6oyw5sqv	46	18	diversification	diversification	NN
cord-002728-6oyw5sqv	46	19	of	of	IN
cord-002728-6oyw5sqv	46	20	viral	viral	JJ
cord-002728-6oyw5sqv	46	21	species	specie	NNS
cord-002728-6oyw5sqv	46	22	,	,	,
cord-002728-6oyw5sqv	46	23	and	and	CC
cord-002728-6oyw5sqv	46	24	increased	increase	VBN
cord-002728-6oyw5sqv	46	25	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	46	26	resistance	resistance	NN
cord-002728-6oyw5sqv	46	27	and/or	and/or	CC
cord-002728-6oyw5sqv	46	28	induction	induction	NN
cord-002728-6oyw5sqv	46	29	of	of	IN
cord-002728-6oyw5sqv	46	30	toxins	toxin	NNS
cord-002728-6oyw5sqv	46	31	or	or	CC
cord-002728-6oyw5sqv	46	32	virulence	virulence	NN
cord-002728-6oyw5sqv	46	33	factors	factor	NNS
cord-002728-6oyw5sqv	46	34	in	in	IN
cord-002728-6oyw5sqv	46	35	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	46	36	.	.	.
cord-002728-6oyw5sqv	47	1	5	5	LS
cord-002728-6oyw5sqv	48	1	Some	some	DT
cord-002728-6oyw5sqv	48	2	phages	phage	NNS
cord-002728-6oyw5sqv	48	3	alter	alter	VBP
cord-002728-6oyw5sqv	48	4	the	the	DT
cord-002728-6oyw5sqv	48	5	antigenicity	antigenicity	NN
cord-002728-6oyw5sqv	48	6	of	of	IN
cord-002728-6oyw5sqv	48	7	their	-PRON-	PRP$
cord-002728-6oyw5sqv	48	8	hosts	host	NNS
cord-002728-6oyw5sqv	48	9	by	by	IN
cord-002728-6oyw5sqv	48	10	producing	produce	VBG
cord-002728-6oyw5sqv	48	11	enzymes	enzyme	NNS
cord-002728-6oyw5sqv	48	12	that	that	WDT
cord-002728-6oyw5sqv	48	13	modify	modify	VBP
cord-002728-6oyw5sqv	48	14	the	the	DT
cord-002728-6oyw5sqv	48	15	O	o	NN
cord-002728-6oyw5sqv	48	16	-	-	HYPH
cord-002728-6oyw5sqv	48	17	antigen	antigen	NN
cord-002728-6oyw5sqv	48	18	component	component	NN
cord-002728-6oyw5sqv	48	19	of	of	IN
cord-002728-6oyw5sqv	48	20	lipopolysaccharides	lipopolysaccharides	NNP
cord-002728-6oyw5sqv	48	21	.	.	.
cord-002728-6oyw5sqv	49	1	6	6	CD
cord-002728-6oyw5sqv	49	2	Modification	modification	NN
cord-002728-6oyw5sqv	49	3	of	of	IN
cord-002728-6oyw5sqv	49	4	surface	surface	NN
cord-002728-6oyw5sqv	49	5	structures	structure	NNS
cord-002728-6oyw5sqv	49	6	of	of	IN
cord-002728-6oyw5sqv	49	7	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	49	8	has	have	VBZ
cord-002728-6oyw5sqv	49	9	the	the	DT
cord-002728-6oyw5sqv	49	10	potential	potential	NN
cord-002728-6oyw5sqv	49	11	to	to	TO
cord-002728-6oyw5sqv	49	12	affect	affect	VB
cord-002728-6oyw5sqv	49	13	microbial	microbial	JJ
cord-002728-6oyw5sqv	49	14	interactions	interaction	NNS
cord-002728-6oyw5sqv	49	15	with	with	IN
cord-002728-6oyw5sqv	49	16	the	the	DT
cord-002728-6oyw5sqv	49	17	human	human	JJ
cord-002728-6oyw5sqv	49	18	host	host	NN
cord-002728-6oyw5sqv	49	19	,	,	,
cord-002728-6oyw5sqv	49	20	and	and	CC
cord-002728-6oyw5sqv	49	21	influence	influence	NN
cord-002728-6oyw5sqv	49	22	niche	niche	NN
cord-002728-6oyw5sqv	49	23	specialisation	specialisation	NN
cord-002728-6oyw5sqv	49	24	within	within	IN
cord-002728-6oyw5sqv	49	25	the	the	DT
cord-002728-6oyw5sqv	49	26	GI	GI	NNP
cord-002728-6oyw5sqv	49	27	tract	tract	NN
cord-002728-6oyw5sqv	49	28	.	.	.
cord-002728-6oyw5sqv	50	1	7	7	CD
cord-002728-6oyw5sqv	50	2	Presence	presence	NN
cord-002728-6oyw5sqv	50	3	of	of	IN
cord-002728-6oyw5sqv	50	4	clustered	cluster	VBN
cord-002728-6oyw5sqv	50	5	regularly	regularly	RB
cord-002728-6oyw5sqv	50	6	interspaced	interspace	VBD
cord-002728-6oyw5sqv	50	7	short	short	JJ
cord-002728-6oyw5sqv	50	8	palindromic	palindromic	JJ
cord-002728-6oyw5sqv	50	9	repeats	repeat	NNS
cord-002728-6oyw5sqv	50	10	(	(	-LRB-
cord-002728-6oyw5sqv	50	11	CRISPRs	CRISPRs	NNP
cord-002728-6oyw5sqv	50	12	)	)	-RRB-
cord-002728-6oyw5sqv	50	13	confers	confer	VBZ
cord-002728-6oyw5sqv	50	14	upon	upon	IN
cord-002728-6oyw5sqv	50	15	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	50	16	resistance	resistance	NN
cord-002728-6oyw5sqv	50	17	to	to	IN
cord-002728-6oyw5sqv	50	18	phage	phage	NN
cord-002728-6oyw5sqv	50	19	infection	infection	NN
cord-002728-6oyw5sqv	50	20	and	and	CC
cord-002728-6oyw5sqv	50	21	contributes	contribute	VBZ
cord-002728-6oyw5sqv	50	22	to	to	IN
cord-002728-6oyw5sqv	50	23	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	50	24	adaptive	adaptive	JJ
cord-002728-6oyw5sqv	50	25	immunity	immunity	NN
cord-002728-6oyw5sqv	50	26	.	.	.
cord-002728-6oyw5sqv	51	1	Analyses	analysis	NNS
cord-002728-6oyw5sqv	51	2	of	of	IN
cord-002728-6oyw5sqv	51	3	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	51	4	sequence	sequence	NN
cord-002728-6oyw5sqv	51	5	data	datum	NNS
cord-002728-6oyw5sqv	51	6	provide	provide	VBP
cord-002728-6oyw5sqv	51	7	detailed	detailed	JJ
cord-002728-6oyw5sqv	51	8	information	information	NN
cord-002728-6oyw5sqv	51	9	on	on	IN
cord-002728-6oyw5sqv	51	10	phage	phage	NN
cord-002728-6oyw5sqv	51	11	-	-	HYPH
cord-002728-6oyw5sqv	51	12	host	host	NN
cord-002728-6oyw5sqv	51	13	and	and	CC
cord-002728-6oyw5sqv	51	14	phage	phage	NN
cord-002728-6oyw5sqv	51	15	-	-	HYPH
cord-002728-6oyw5sqv	51	16	phage	phage	NN
cord-002728-6oyw5sqv	51	17	competition	competition	NN
cord-002728-6oyw5sqv	51	18	within	within	IN
cord-002728-6oyw5sqv	51	19	the	the	DT
cord-002728-6oyw5sqv	51	20	human	human	JJ
cord-002728-6oyw5sqv	51	21	faecal	faecal	JJ
cord-002728-6oyw5sqv	51	22	microbiome	microbiome	NN
cord-002728-6oyw5sqv	51	23	,	,	,
cord-002728-6oyw5sqv	51	24	implying	imply	VBG
cord-002728-6oyw5sqv	51	25	CRISPR	CRISPR	NNP
cord-002728-6oyw5sqv	51	26	spacers	spacer	NNS
cord-002728-6oyw5sqv	51	27	are	be	VBP
cord-002728-6oyw5sqv	51	28	actively	actively	RB
cord-002728-6oyw5sqv	51	29	and	and	CC
cord-002728-6oyw5sqv	51	30	continuously	continuously	RB
cord-002728-6oyw5sqv	51	31	acquired	acquire	VBN
cord-002728-6oyw5sqv	51	32	by	by	IN
cord-002728-6oyw5sqv	51	33	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	51	34	in	in	IN
cord-002728-6oyw5sqv	51	35	response	response	NN
cord-002728-6oyw5sqv	51	36	to	to	IN
cord-002728-6oyw5sqv	51	37	the	the	DT
cord-002728-6oyw5sqv	51	38	presence	presence	NN
cord-002728-6oyw5sqv	51	39	of	of	IN
cord-002728-6oyw5sqv	51	40	phages	phage	NNS
cord-002728-6oyw5sqv	51	41	in	in	IN
cord-002728-6oyw5sqv	51	42	the	the	DT
cord-002728-6oyw5sqv	51	43	GI	GI	NNP
cord-002728-6oyw5sqv	51	44	tract	tract	NN
cord-002728-6oyw5sqv	51	45	.	.	.
cord-002728-6oyw5sqv	52	1	8	8	CD
cord-002728-6oyw5sqv	53	1	The	the	DT
cord-002728-6oyw5sqv	53	2	potential	potential	JJ
cord-002728-6oyw5sqv	53	3	effects	effect	NNS
cord-002728-6oyw5sqv	53	4	of	of	IN
cord-002728-6oyw5sqv	53	5	such	such	JJ
cord-002728-6oyw5sqv	53	6	phage	phage	NN
cord-002728-6oyw5sqv	53	7	-	-	HYPH
cord-002728-6oyw5sqv	53	8	host	host	NN
cord-002728-6oyw5sqv	53	9	interactions	interaction	NNS
cord-002728-6oyw5sqv	53	10	on	on	IN
cord-002728-6oyw5sqv	53	11	microbiota	microbiota	NN
cord-002728-6oyw5sqv	53	12	composition	composition	NN
cord-002728-6oyw5sqv	53	13	/	/	SYM
cord-002728-6oyw5sqv	53	14	function	function	NN
cord-002728-6oyw5sqv	53	15	or	or	CC
cord-002728-6oyw5sqv	53	16	host	host	NN
cord-002728-6oyw5sqv	53	17	health	health	NN
cord-002728-6oyw5sqv	53	18	are	be	VBP
cord-002728-6oyw5sqv	53	19	unknown	unknown	JJ
cord-002728-6oyw5sqv	53	20	.	.	.
cord-002728-6oyw5sqv	54	1	Viruses	virus	NNS
cord-002728-6oyw5sqv	54	2	do	do	VBP
cord-002728-6oyw5sqv	54	3	not	not	RB
cord-002728-6oyw5sqv	54	4	encode	encode	VB
cord-002728-6oyw5sqv	54	5	universally	universally	RB
cord-002728-6oyw5sqv	54	6	conserved	conserve	VBN
cord-002728-6oyw5sqv	54	7	genes	gene	NNS
cord-002728-6oyw5sqv	54	8	such	such	JJ
cord-002728-6oyw5sqv	54	9	as	as	IN
cord-002728-6oyw5sqv	54	10	the	the	DT
cord-002728-6oyw5sqv	54	11	16S	16S	NNPS
cord-002728-6oyw5sqv	54	12	or	or	CC
cord-002728-6oyw5sqv	54	13	18S	18S	NNPS
cord-002728-6oyw5sqv	55	1	rRNA	rrna	JJ
cord-002728-6oyw5sqv	55	2	genes	gene	NNS
cord-002728-6oyw5sqv	55	3	of	of	IN
cord-002728-6oyw5sqv	55	4	prokaryotes	prokaryote	NNS
cord-002728-6oyw5sqv	55	5	and	and	CC
cord-002728-6oyw5sqv	55	6	eukaryotes	eukaryote	NNS
cord-002728-6oyw5sqv	55	7	,	,	,
cord-002728-6oyw5sqv	55	8	respectively	respectively	RB
cord-002728-6oyw5sqv	55	9	,	,	,
cord-002728-6oyw5sqv	55	10	and	and	CC
cord-002728-6oyw5sqv	55	11	are	be	VBP
cord-002728-6oyw5sqv	55	12	genetically	genetically	RB
cord-002728-6oyw5sqv	55	13	highly	highly	RB
cord-002728-6oyw5sqv	55	14	diverse	diverse	JJ
cord-002728-6oyw5sqv	55	15	.	.	.
cord-002728-6oyw5sqv	56	1	Consequently	consequently	RB
cord-002728-6oyw5sqv	56	2	,	,	,
cord-002728-6oyw5sqv	56	3	it	-PRON-	PRP
cord-002728-6oyw5sqv	56	4	is	be	VBZ
cord-002728-6oyw5sqv	56	5	not	not	RB
cord-002728-6oyw5sqv	56	6	possible	possible	JJ
cord-002728-6oyw5sqv	56	7	to	to	TO
cord-002728-6oyw5sqv	56	8	use	use	VB
cord-002728-6oyw5sqv	56	9	metataxonomic	metataxonomic	JJ
cord-002728-6oyw5sqv	56	10	approaches	approach	NNS
cord-002728-6oyw5sqv	56	11	such	such	JJ
cord-002728-6oyw5sqv	56	12	as	as	IN
cord-002728-6oyw5sqv	56	13	16S	16S	NNP
cord-002728-6oyw5sqv	56	14	rRNA	rrna	NN
cord-002728-6oyw5sqv	56	15	gene	gene	NN
cord-002728-6oyw5sqv	56	16	sequencing	sequencing	NN
cord-002728-6oyw5sqv	56	17	to	to	TO
cord-002728-6oyw5sqv	56	18	characterise	characterise	VB
cord-002728-6oyw5sqv	56	19	VLPs	vlp	NNS
cord-002728-6oyw5sqv	56	20	within	within	IN
cord-002728-6oyw5sqv	56	21	ecosystems	ecosystem	NNS
cord-002728-6oyw5sqv	56	22	.	.	.
cord-002728-6oyw5sqv	57	1	Traditionally	traditionally	RB
cord-002728-6oyw5sqv	57	2	,	,	,
cord-002728-6oyw5sqv	57	3	classical	classical	JJ
cord-002728-6oyw5sqv	57	4	approaches	approach	NNS
cord-002728-6oyw5sqv	57	5	-	-	:
cord-002728-6oyw5sqv	57	6	mainly	mainly	RB
cord-002728-6oyw5sqv	57	7	microscopy	microscopy	NN
cord-002728-6oyw5sqv	57	8	and	and	CC
cord-002728-6oyw5sqv	57	9	cultivation	cultivation	NN
cord-002728-6oyw5sqv	57	10	-	-	,
cord-002728-6oyw5sqv	57	11	have	have	VBP
cord-002728-6oyw5sqv	57	12	been	be	VBN
cord-002728-6oyw5sqv	57	13	relied	rely	VBN
cord-002728-6oyw5sqv	57	14	upon	upon	IN
cord-002728-6oyw5sqv	57	15	to	to	TO
cord-002728-6oyw5sqv	57	16	characterise	characterise	VB
cord-002728-6oyw5sqv	57	17	VLPs	vlp	NNS
cord-002728-6oyw5sqv	57	18	in	in	IN
cord-002728-6oyw5sqv	57	19	the	the	DT
cord-002728-6oyw5sqv	57	20	human	human	JJ
cord-002728-6oyw5sqv	57	21	gut	gut	NN
cord-002728-6oyw5sqv	57	22	.	.	.
cord-002728-6oyw5sqv	58	1	Based	base	VBN
cord-002728-6oyw5sqv	58	2	on	on	IN
cord-002728-6oyw5sqv	58	3	transmission	transmission	NN
cord-002728-6oyw5sqv	58	4	electron	electron	NN
cord-002728-6oyw5sqv	58	5	microscopy	microscopy	NN
cord-002728-6oyw5sqv	58	6	(	(	-LRB-
cord-002728-6oyw5sqv	58	7	TEM	TEM	NNP
cord-002728-6oyw5sqv	58	8	)	)	-RRB-
cord-002728-6oyw5sqv	58	9	,	,	,
cord-002728-6oyw5sqv	58	10	mucosal	mucosal	JJ
cord-002728-6oyw5sqv	58	11	samples	sample	NNS
cord-002728-6oyw5sqv	58	12	contain~1.2	contain~1.2	CD
cord-002728-6oyw5sqv	58	13	9	9	CD
cord-002728-6oyw5sqv	58	14	10	10	CD
cord-002728-6oyw5sqv	58	15	9	9	CD
cord-002728-6oyw5sqv	58	16	VLPs	vlp	NNS
cord-002728-6oyw5sqv	58	17	/	/	SYM
cord-002728-6oyw5sqv	58	18	biopsy	biopsy	NN
cord-002728-6oyw5sqv	58	19	.	.	.
cord-002728-6oyw5sqv	59	1	9	9	CD
cord-002728-6oyw5sqv	59	2	VLPs	vlp	NNS
cord-002728-6oyw5sqv	59	3	have	have	VBP
cord-002728-6oyw5sqv	59	4	been	be	VBN
cord-002728-6oyw5sqv	59	5	detected	detect	VBN
cord-002728-6oyw5sqv	59	6	in	in	IN
cord-002728-6oyw5sqv	59	7	caecal	caecal	JJ
cord-002728-6oyw5sqv	59	8	contents	content	NNS
cord-002728-6oyw5sqv	59	9	at	at	IN
cord-002728-6oyw5sqv	59	10	10	10	CD
cord-002728-6oyw5sqv	59	11	6	6	CD
cord-002728-6oyw5sqv	59	12	/mL	/mL	.
cord-002728-6oyw5sqv	59	13	using	use	VBG
cord-002728-6oyw5sqv	59	14	TEM	TEM	NNP
cord-002728-6oyw5sqv	59	15	10	10	CD
cord-002728-6oyw5sqv	59	16	with	with	IN
cord-002728-6oyw5sqv	59	17	faeces	faece	NNS
cord-002728-6oyw5sqv	59	18	harbouring	harbour	VBG
cord-002728-6oyw5sqv	59	19	10	10	CD
cord-002728-6oyw5sqv	59	20	8	8	CD
cord-002728-6oyw5sqv	59	21	-10	-10	CD
cord-002728-6oyw5sqv	59	22	9	9	CD
cord-002728-6oyw5sqv	59	23	VLPs	vlp	NNS
cord-002728-6oyw5sqv	59	24	/	/	SYM
cord-002728-6oyw5sqv	59	25	g	g	NN
cord-002728-6oyw5sqv	59	26	wet	wet	JJ
cord-002728-6oyw5sqv	59	27	weight	weight	NN
cord-002728-6oyw5sqv	59	28	.	.	.
cord-002728-6oyw5sqv	60	1	10	10	CD
cord-002728-6oyw5sqv	60	2	,	,	,
cord-002728-6oyw5sqv	60	3	11	11	CD
cord-002728-6oyw5sqv	60	4	In	in	IN
cord-002728-6oyw5sqv	60	5	all	all	DT
cord-002728-6oyw5sqv	60	6	GI	GI	NNP
cord-002728-6oyw5sqv	60	7	contents	content	NNS
cord-002728-6oyw5sqv	60	8	examined	examine	VBN
cord-002728-6oyw5sqv	60	9	to	to	IN
cord-002728-6oyw5sqv	60	10	date	date	NN
cord-002728-6oyw5sqv	60	11	by	by	IN
cord-002728-6oyw5sqv	60	12	microscopy	microscopy	NNS
cord-002728-6oyw5sqv	60	13	,	,	,
cord-002728-6oyw5sqv	60	14	the	the	DT
cord-002728-6oyw5sqv	60	15	overwhelming	overwhelming	JJ
cord-002728-6oyw5sqv	60	16	majority	majority	NN
cord-002728-6oyw5sqv	60	17	of	of	IN
cord-002728-6oyw5sqv	60	18	VLPs	vlp	NNS
cord-002728-6oyw5sqv	60	19	have	have	VBP
cord-002728-6oyw5sqv	60	20	been	be	VBN
cord-002728-6oyw5sqv	60	21	phages	phage	NNS
cord-002728-6oyw5sqv	60	22	of	of	IN
cord-002728-6oyw5sqv	60	23	the	the	DT
cord-002728-6oyw5sqv	60	24	order	order	NN
cord-002728-6oyw5sqv	61	1	Caudovirales	Caudovirales	NNP
cord-002728-6oyw5sqv	61	2	,	,	,
cord-002728-6oyw5sqv	61	3	with	with	IN
cord-002728-6oyw5sqv	61	4	the	the	DT
cord-002728-6oyw5sqv	61	5	human	human	JJ
cord-002728-6oyw5sqv	61	6	GI	GI	NNP
cord-002728-6oyw5sqv	61	7	tract	tract	NN
cord-002728-6oyw5sqv	61	8	estimated	estimate	VBN
cord-002728-6oyw5sqv	61	9	to	to	TO
cord-002728-6oyw5sqv	61	10	harbour	harbour	VB
cord-002728-6oyw5sqv	61	11	10	10	CD
cord-002728-6oyw5sqv	61	12	15	15	CD
cord-002728-6oyw5sqv	61	13	phages	phage	NNS
cord-002728-6oyw5sqv	61	14	in	in	IN
cord-002728-6oyw5sqv	61	15	total	total	NN
cord-002728-6oyw5sqv	61	16	.	.	.
cord-002728-6oyw5sqv	62	1	3	3	CD
cord-002728-6oyw5sqv	62	2	,	,	,
cord-002728-6oyw5sqv	62	3	9	9	CD
cord-002728-6oyw5sqv	62	4	,	,	,
cord-002728-6oyw5sqv	62	5	10	10	CD
cord-002728-6oyw5sqv	62	6	,	,	,
cord-002728-6oyw5sqv	62	7	12	12	CD
cord-002728-6oyw5sqv	63	1	The	the	DT
cord-002728-6oyw5sqv	63	2	order	order	NN
cord-002728-6oyw5sqv	64	1	Caudovirales	Caudovirales	NNP
cord-002728-6oyw5sqv	64	2	encompasses	encompass	VBZ
cord-002728-6oyw5sqv	64	3	most	most	RBS
cord-002728-6oyw5sqv	64	4	known	know	VBN
cord-002728-6oyw5sqv	64	5	phages	phage	NNS
cord-002728-6oyw5sqv	64	6	(	(	-LRB-
cord-002728-6oyw5sqv	64	7	Figure	figure	NN
cord-002728-6oyw5sqv	64	8	2	2	CD
cord-002728-6oyw5sqv	64	9	)	)	-RRB-
cord-002728-6oyw5sqv	64	10	,	,	,
cord-002728-6oyw5sqv	64	11	comprising	comprise	VBG
cord-002728-6oyw5sqv	64	12	the	the	DT
cord-002728-6oyw5sqv	64	13	families	family	NNS
cord-002728-6oyw5sqv	64	14	 	 	_SP
cord-002728-6oyw5sqv	64	15	The	the	DT
cord-002728-6oyw5sqv	64	16	only	only	JJ
cord-002728-6oyw5sqv	64	17	reliable	reliable	JJ
cord-002728-6oyw5sqv	64	18	molecular	molecular	JJ
cord-002728-6oyw5sqv	64	19	method	method	NN
cord-002728-6oyw5sqv	64	20	currently	currently	RB
cord-002728-6oyw5sqv	64	21	available	available	JJ
cord-002728-6oyw5sqv	64	22	for	for	IN
cord-002728-6oyw5sqv	64	23	routine	routine	JJ
cord-002728-6oyw5sqv	64	24	surveys	survey	NNS
cord-002728-6oyw5sqv	64	25	of	of	IN
cord-002728-6oyw5sqv	64	26	the	the	DT
cord-002728-6oyw5sqv	64	27	human	human	JJ
cord-002728-6oyw5sqv	64	28	virome	virome	NNP
cord-002728-6oyw5sqv	64	29	is	be	VBZ
cord-002728-6oyw5sqv	64	30	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	64	31	.	.	.
cord-002728-6oyw5sqv	65	1	Metagenomics	Metagenomics	NNP
cord-002728-6oyw5sqv	65	2	is	be	VBZ
cord-002728-6oyw5sqv	65	3	a	a	DT
cord-002728-6oyw5sqv	65	4	culture	culture	NN
cord-002728-6oyw5sqv	65	5	-	-	HYPH
cord-002728-6oyw5sqv	65	6	independent	independent	JJ
cord-002728-6oyw5sqv	65	7	,	,	,
cord-002728-6oyw5sqv	65	8	molecular	molecular	JJ
cord-002728-6oyw5sqv	65	9	-	-	HYPH
cord-002728-6oyw5sqv	65	10	based	base	VBN
cord-002728-6oyw5sqv	65	11	approach	approach	NN
cord-002728-6oyw5sqv	65	12	that	that	WDT
cord-002728-6oyw5sqv	65	13	allows	allow	VBZ
cord-002728-6oyw5sqv	65	14	functional	functional	JJ
cord-002728-6oyw5sqv	65	15	and	and	CC
cord-002728-6oyw5sqv	65	16	sequence	sequence	NN
cord-002728-6oyw5sqv	65	17	-	-	HYPH
cord-002728-6oyw5sqv	65	18	based	base	VBN
cord-002728-6oyw5sqv	65	19	analyses	analysis	NNS
cord-002728-6oyw5sqv	65	20	of	of	IN
cord-002728-6oyw5sqv	65	21	the	the	DT
cord-002728-6oyw5sqv	65	22	collective	collective	JJ
cord-002728-6oyw5sqv	65	23	microbial	microbial	JJ
cord-002728-6oyw5sqv	65	24	genomes	genome	NNS
cord-002728-6oyw5sqv	65	25	contained	contain	VBN
cord-002728-6oyw5sqv	65	26	in	in	IN
cord-002728-6oyw5sqv	65	27	an	an	DT
cord-002728-6oyw5sqv	65	28	environmental	environmental	JJ
cord-002728-6oyw5sqv	65	29	sample	sample	NN
cord-002728-6oyw5sqv	65	30	,	,	,
cord-002728-6oyw5sqv	65	31	providing	provide	VBG
cord-002728-6oyw5sqv	65	32	a	a	DT
cord-002728-6oyw5sqv	65	33	powerful	powerful	JJ
cord-002728-6oyw5sqv	65	34	approach	approach	NN
cord-002728-6oyw5sqv	65	35	for	for	IN
cord-002728-6oyw5sqv	65	36	exploring	explore	VBG
cord-002728-6oyw5sqv	65	37	the	the	DT
cord-002728-6oyw5sqv	65	38	ecology	ecology	NN
cord-002728-6oyw5sqv	65	39	of	of	IN
cord-002728-6oyw5sqv	65	40	complex	complex	JJ
cord-002728-6oyw5sqv	65	41	microbial	microbial	JJ
cord-002728-6oyw5sqv	65	42	communities	community	NNS
cord-002728-6oyw5sqv	65	43	.	.	.
cord-002728-6oyw5sqv	66	1	14	14	CD
cord-002728-6oyw5sqv	67	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	67	2	has	have	VBZ
cord-002728-6oyw5sqv	67	3	been	be	VBN
cord-002728-6oyw5sqv	67	4	used	use	VBN
cord-002728-6oyw5sqv	67	5	to	to	TO
cord-002728-6oyw5sqv	67	6	examine	examine	VB
cord-002728-6oyw5sqv	67	7	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	67	8	communities	community	NNS
cord-002728-6oyw5sqv	67	9	associated	associate	VBN
cord-002728-6oyw5sqv	67	10	with	with	IN
cord-002728-6oyw5sqv	67	11	the	the	DT
cord-002728-6oyw5sqv	67	12	human	human	JJ
cord-002728-6oyw5sqv	67	13	gut	gut	NN
cord-002728-6oyw5sqv	67	14	microbiome	microbiome	NN
cord-002728-6oyw5sqv	67	15	in	in	IN
cord-002728-6oyw5sqv	67	16	health	health	NN
cord-002728-6oyw5sqv	67	17	and	and	CC
cord-002728-6oyw5sqv	67	18	disease	disease	NN
cord-002728-6oyw5sqv	67	19	,	,	,
cord-002728-6oyw5sqv	67	20	[	[	-LRB-
cord-002728-6oyw5sqv	67	21	15	15	CD
cord-002728-6oyw5sqv	67	22	]	]	-RRB-
cord-002728-6oyw5sqv	67	23	[	[	-LRB-
cord-002728-6oyw5sqv	67	24	16	16	CD
cord-002728-6oyw5sqv	67	25	]	]	-RRB-
cord-002728-6oyw5sqv	67	26	[	[	-LRB-
cord-002728-6oyw5sqv	67	27	17	17	CD
cord-002728-6oyw5sqv	67	28	]	]	-RRB-
cord-002728-6oyw5sqv	67	29	[	[	-LRB-
cord-002728-6oyw5sqv	67	30	18	18	CD
cord-002728-6oyw5sqv	67	31	]	]	-RRB-
cord-002728-6oyw5sqv	67	32	and	and	CC
cord-002728-6oyw5sqv	67	33	to	to	TO
cord-002728-6oyw5sqv	67	34	examine	examine	VB
cord-002728-6oyw5sqv	67	35	viromes	virome	NNS
cord-002728-6oyw5sqv	67	36	associated	associate	VBN
cord-002728-6oyw5sqv	67	37	with	with	IN
cord-002728-6oyw5sqv	67	38	different	different	JJ
cord-002728-6oyw5sqv	67	39	regions	region	NNS
cord-002728-6oyw5sqv	67	40	of	of	IN
cord-002728-6oyw5sqv	67	41	the	the	DT
cord-002728-6oyw5sqv	67	42	human	human	JJ
cord-002728-6oyw5sqv	67	43	body	body	NN
cord-002728-6oyw5sqv	67	44	(	(	-LRB-
cord-002728-6oyw5sqv	67	45	Table	Table	NNP
cord-002728-6oyw5sqv	67	46	S1	S1	NNP
cord-002728-6oyw5sqv	67	47	)	)	-RRB-
cord-002728-6oyw5sqv	67	48	.	.	.
cord-002728-6oyw5sqv	68	1	A	a	DT
cord-002728-6oyw5sqv	68	2	protocol	protocol	NN
cord-002728-6oyw5sqv	68	3	involving	involve	VBG
cord-002728-6oyw5sqv	68	4	homogenisation	homogenisation	NN
cord-002728-6oyw5sqv	68	5	of	of	IN
cord-002728-6oyw5sqv	68	6	faeces	faece	NNS
cord-002728-6oyw5sqv	68	7	in	in	IN
cord-002728-6oyw5sqv	68	8	buffer	buffer	NN
cord-002728-6oyw5sqv	68	9	,	,	,
cord-002728-6oyw5sqv	68	10	centrifugation	centrifugation	NN
cord-002728-6oyw5sqv	68	11	(	(	-LRB-
cord-002728-6oyw5sqv	68	12	to	to	TO
cord-002728-6oyw5sqv	68	13	remove	remove	VB
cord-002728-6oyw5sqv	68	14	cell	cell	NN
cord-002728-6oyw5sqv	68	15	debris	debris	NN
cord-002728-6oyw5sqv	68	16	)	)	-RRB-
cord-002728-6oyw5sqv	68	17	,	,	,
cord-002728-6oyw5sqv	68	18	tangential	tangential	JJ
cord-002728-6oyw5sqv	68	19	flow	flow	NN
cord-002728-6oyw5sqv	68	20	filtration	filtration	NN
cord-002728-6oyw5sqv	68	21	(	(	-LRB-
cord-002728-6oyw5sqv	68	22	TFF	TFF	NNP
cord-002728-6oyw5sqv	68	23	)	)	-RRB-
cord-002728-6oyw5sqv	68	24	(	(	-LRB-
cord-002728-6oyw5sqv	68	25	to	to	TO
cord-002728-6oyw5sqv	68	26	concentrate	concentrate	VB
cord-002728-6oyw5sqv	68	27	large	large	JJ
cord-002728-6oyw5sqv	68	28	-	-	HYPH
cord-002728-6oyw5sqv	68	29	volume	volume	NN
cord-002728-6oyw5sqv	68	30	samples	sample	NNS
cord-002728-6oyw5sqv	68	31	and	and	CC
cord-002728-6oyw5sqv	68	32	isolate	isolate	VBP
cord-002728-6oyw5sqv	68	33	VLPs	vlp	NNS
cord-002728-6oyw5sqv	68	34	)	)	-RRB-
cord-002728-6oyw5sqv	68	35	,	,	,
cord-002728-6oyw5sqv	68	36	ultracentrifugation	ultracentrifugation	NN
cord-002728-6oyw5sqv	68	37	and	and	CC
cord-002728-6oyw5sqv	68	38	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	68	39	reconstruction	reconstruction	NN
cord-002728-6oyw5sqv	68	40	was	be	VBD
cord-002728-6oyw5sqv	68	41	used	use	VBN
cord-002728-6oyw5sqv	68	42	to	to	TO
cord-002728-6oyw5sqv	68	43	characterise	characterise	VB
cord-002728-6oyw5sqv	68	44	the	the	DT
cord-002728-6oyw5sqv	68	45	first	first	JJ
cord-002728-6oyw5sqv	68	46	human	human	JJ
cord-002728-6oyw5sqv	68	47	faecal	faecal	JJ
cord-002728-6oyw5sqv	68	48	virome	virome	NN
cord-002728-6oyw5sqv	68	49	.	.	.
cord-002728-6oyw5sqv	69	1	19	19	CD
cord-002728-6oyw5sqv	70	1	However	however	RB
cord-002728-6oyw5sqv	70	2	,	,	,
cord-002728-6oyw5sqv	70	3	recent	recent	JJ
cord-002728-6oyw5sqv	70	4	improvements	improvement	NNS
cord-002728-6oyw5sqv	70	5	in	in	IN
cord-002728-6oyw5sqv	70	6	recovery	recovery	NN
cord-002728-6oyw5sqv	70	7	methods	method	NNS
cord-002728-6oyw5sqv	70	8	give	give	VBP
cord-002728-6oyw5sqv	70	9	the	the	DT
cord-002728-6oyw5sqv	70	10	potential	potential	NN
cord-002728-6oyw5sqv	70	11	to	to	TO
cord-002728-6oyw5sqv	70	12	characterise	characterise	VB
cord-002728-6oyw5sqv	70	13	human	human	JJ
cord-002728-6oyw5sqv	70	14	-	-	HYPH
cord-002728-6oyw5sqv	70	15	associated	associate	VBN
cord-002728-6oyw5sqv	70	16	VLP	VLP	NNP
cord-002728-6oyw5sqv	70	17	assemblages	assemblage	NNS
cord-002728-6oyw5sqv	70	18	at	at	IN
cord-002728-6oyw5sqv	70	19	the	the	DT
cord-002728-6oyw5sqv	70	20	molecular	molecular	JJ
cord-002728-6oyw5sqv	70	21	level	level	NN
cord-002728-6oyw5sqv	70	22	in	in	IN
cord-002728-6oyw5sqv	70	23	greater	great	JJR
cord-002728-6oyw5sqv	70	24	detail	detail	NN
cord-002728-6oyw5sqv	70	25	than	than	IN
cord-002728-6oyw5sqv	70	26	ever	ever	RB
cord-002728-6oyw5sqv	70	27	before	before	RB
cord-002728-6oyw5sqv	70	28	(	(	-LRB-
cord-002728-6oyw5sqv	70	29	Sequences	sequence	NNS
cord-002728-6oyw5sqv	70	30	associated	associate	VBN
cord-002728-6oyw5sqv	70	31	with	with	IN
cord-002728-6oyw5sqv	70	32	this	this	DT
cord-002728-6oyw5sqv	70	33	phage	phage	NN
cord-002728-6oyw5sqv	70	34	were	be	VBD
cord-002728-6oyw5sqv	70	35	not	not	RB
cord-002728-6oyw5sqv	70	36	found	find	VBN
cord-002728-6oyw5sqv	70	37	in	in	IN
cord-002728-6oyw5sqv	70	38	American	american	JJ
cord-002728-6oyw5sqv	70	39	gut	gut	NN
cord-002728-6oyw5sqv	70	40	-	-	HYPH
cord-002728-6oyw5sqv	70	41	associated	associate	VBN
cord-002728-6oyw5sqv	70	42	datasets	dataset	NNS
cord-002728-6oyw5sqv	70	43	(	(	-LRB-
cord-002728-6oyw5sqv	70	44	metagenome	metagenome	NNP
cord-002728-6oyw5sqv	70	45	or	or	CC
cord-002728-6oyw5sqv	70	46	virome	virome	NNP
cord-002728-6oyw5sqv	70	47	)	)	-RRB-
cord-002728-6oyw5sqv	70	48	,	,	,
cord-002728-6oyw5sqv	70	49	suggesting	suggest	VBG
cord-002728-6oyw5sqv	70	50	geographical	geographical	JJ
cord-002728-6oyw5sqv	70	51	variation	variation	NN
cord-002728-6oyw5sqv	70	52	in	in	IN
cord-002728-6oyw5sqv	70	53	distribution	distribution	NN
cord-002728-6oyw5sqv	70	54	of	of	IN
cord-002728-6oyw5sqv	70	55	gut	gut	NN
cord-002728-6oyw5sqv	70	56	-	-	HYPH
cord-002728-6oyw5sqv	70	57	associated	associate	VBN
cord-002728-6oyw5sqv	70	58	phages	phage	NNS
cord-002728-6oyw5sqv	70	59	.	.	.
cord-002728-6oyw5sqv	71	1	7	7	CD
cord-002728-6oyw5sqv	72	1	Using	use	VBG
cord-002728-6oyw5sqv	72	2	a	a	DT
cord-002728-6oyw5sqv	72	3	similar	similar	JJ
cord-002728-6oyw5sqv	72	4	metagenomic	metagenomic	NN
cord-002728-6oyw5sqv	72	5	mining	mining	NN
cord-002728-6oyw5sqv	72	6	approach	approach	NN
cord-002728-6oyw5sqv	72	7	but	but	CC
cord-002728-6oyw5sqv	72	8	with	with	IN
cord-002728-6oyw5sqv	72	9	major	major	JJ
cord-002728-6oyw5sqv	72	10	capsid	capsid	NN
cord-002728-6oyw5sqv	72	11	protein	protein	NN
cord-002728-6oyw5sqv	72	12	VP1	vp1	NN
cord-002728-6oyw5sqv	72	13	specific	specific	JJ
cord-002728-6oyw5sqv	72	14	for	for	IN
cord-002728-6oyw5sqv	72	15	the	the	DT
cord-002728-6oyw5sqv	72	16	ssDNA	ssdna	JJ
cord-002728-6oyw5sqv	72	17	phage	phage	NN
cord-002728-6oyw5sqv	72	18	family	family	NN
cord-002728-6oyw5sqv	72	19	Microviridae	Microviridae	NNP
cord-002728-6oyw5sqv	72	20	,	,	,
cord-002728-6oyw5sqv	72	21	members	member	NNS
cord-002728-6oyw5sqv	72	22	of	of	IN
cord-002728-6oyw5sqv	72	23	the	the	DT
cord-002728-6oyw5sqv	72	24	subfamilies	subfamily	NNS
cord-002728-6oyw5sqv	72	25	Gokushovirinae	Gokushovirinae	NNP
cord-002728-6oyw5sqv	72	26	,	,	,
cord-002728-6oyw5sqv	72	27	Alpnavirinae	Alpnavirinae	NNP
cord-002728-6oyw5sqv	72	28	and	and	CC
cord-002728-6oyw5sqv	72	29	Pichovirinae	Pichovirinae	NNP
cord-002728-6oyw5sqv	72	30	were	be	VBD
cord-002728-6oyw5sqv	72	31	detected	detect	VBN
cord-002728-6oyw5sqv	72	32	in	in	IN
cord-002728-6oyw5sqv	72	33	faecal	faecal	JJ
cord-002728-6oyw5sqv	72	34	metagenomes	metagenome	NNS
cord-002728-6oyw5sqv	72	35	.	.	.
cord-002728-6oyw5sqv	73	1	24	24	CD
cord-002728-6oyw5sqv	74	1	By	by	IN
cord-002728-6oyw5sqv	74	2	using	use	VBG
cord-002728-6oyw5sqv	74	3	phage	phage	NN
cord-002728-6oyw5sqv	74	4	genome	genome	NN
cord-002728-6oyw5sqv	74	5	signature	signature	NN
cord-002728-6oyw5sqv	74	6	-	-	HYPH
cord-002728-6oyw5sqv	74	7	based	base	VBN
cord-002728-6oyw5sqv	74	8	recovery	recovery	NN
cord-002728-6oyw5sqv	74	9	with	with	IN
cord-002728-6oyw5sqv	74	10	metagenomes	metagenomes	NNP
cord-002728-6oyw5sqv	74	11	,	,	,
cord-002728-6oyw5sqv	74	12	several	several	JJ
cord-002728-6oyw5sqv	74	13	(	(	-LRB-
cord-002728-6oyw5sqv	74	14	predominantly	predominantly	RB
cord-002728-6oyw5sqv	74	15	temperate	temperate	JJ
cord-002728-6oyw5sqv	74	16	)	)	-RRB-
cord-002728-6oyw5sqv	74	17	potential	potential	JJ
cord-002728-6oyw5sqv	74	18	gut	gut	NN
cord-002728-6oyw5sqv	74	19	-	-	HYPH
cord-002728-6oyw5sqv	74	20	specific	specific	JJ
cord-002728-6oyw5sqv	74	21	phages	phage	NNS
cord-002728-6oyw5sqv	74	22	infecting	infect	VBG
cord-002728-6oyw5sqv	74	23	members	member	NNS
cord-002728-6oyw5sqv	74	24	of	of	IN
cord-002728-6oyw5sqv	74	25	the	the	DT
cord-002728-6oyw5sqv	74	26	order	order	NN
cord-002728-6oyw5sqv	74	27	Bacteroidales	Bacteroidales	NNPS
cord-002728-6oyw5sqv	74	28	were	be	VBD
cord-002728-6oyw5sqv	74	29	identified	identify	VBN
cord-002728-6oyw5sqv	74	30	.	.	.
cord-002728-6oyw5sqv	75	1	21	21	CD
cord-002728-6oyw5sqv	76	1	This	this	DT
cord-002728-6oyw5sqv	76	2	alignment	alignment	NN
cord-002728-6oyw5sqv	76	3	-	-	HYPH
cord-002728-6oyw5sqv	76	4	free	free	JJ
cord-002728-6oyw5sqv	76	5	approach	approach	NN
cord-002728-6oyw5sqv	76	6	was	be	VBD
cord-002728-6oyw5sqv	76	7	able	able	JJ
cord-002728-6oyw5sqv	76	8	to	to	TO
cord-002728-6oyw5sqv	76	9	resolve	resolve	VB
cord-002728-6oyw5sqv	76	10	phage	phage	NN
cord-002728-6oyw5sqv	76	11	sequences	sequence	NNS
cord-002728-6oyw5sqv	76	12	not	not	RB
cord-002728-6oyw5sqv	76	13	readily	readily	RB
cord-002728-6oyw5sqv	76	14	detected	detect	VBN
cord-002728-6oyw5sqv	76	15	by	by	IN
cord-002728-6oyw5sqv	76	16	conventional	conventional	JJ
cord-002728-6oyw5sqv	76	17	alignment	alignment	NN
cord-002728-6oyw5sqv	76	18	-	-	HYPH
cord-002728-6oyw5sqv	76	19	driven	drive	VBN
cord-002728-6oyw5sqv	76	20	approaches	approach	NNS
cord-002728-6oyw5sqv	76	21	.	.	.
cord-002728-6oyw5sqv	77	1	The	the	DT
cord-002728-6oyw5sqv	77	2	main	main	JJ
cord-002728-6oyw5sqv	77	3	limitation	limitation	NN
cord-002728-6oyw5sqv	77	4	of	of	IN
cord-002728-6oyw5sqv	77	5	this	this	DT
cord-002728-6oyw5sqv	77	6	method	method	NN
cord-002728-6oyw5sqv	77	7	is	be	VBZ
cord-002728-6oyw5sqv	77	8	the	the	DT
cord-002728-6oyw5sqv	77	9	lack	lack	NN
cord-002728-6oyw5sqv	77	10	of	of	IN
cord-002728-6oyw5sqv	77	11	available	available	JJ
cord-002728-6oyw5sqv	77	12	genome	genome	NN
cord-002728-6oyw5sqv	77	13	sequences	sequence	NNS
cord-002728-6oyw5sqv	77	14	from	from	IN
cord-002728-6oyw5sqv	77	15	isolated	isolate	VBN
cord-002728-6oyw5sqv	77	16	phages	phage	NNS
cord-002728-6oyw5sqv	77	17	,	,	,
cord-002728-6oyw5sqv	77	18	as	as	IN
cord-002728-6oyw5sqv	77	19	"	"	``
cord-002728-6oyw5sqv	77	20	driver	driver	NN
cord-002728-6oyw5sqv	77	21	sequences	sequence	NNS
cord-002728-6oyw5sqv	77	22	"	"	''
cord-002728-6oyw5sqv	77	23	are	be	VBP
cord-002728-6oyw5sqv	77	24	required	require	VBN
cord-002728-6oyw5sqv	77	25	to	to	TO
cord-002728-6oyw5sqv	77	26	provide	provide	VB
cord-002728-6oyw5sqv	77	27	baseline	baseline	JJ
cord-002728-6oyw5sqv	77	28	information	information	NN
cord-002728-6oyw5sqv	77	29	upon	upon	IN
cord-002728-6oyw5sqv	77	30	which	which	WDT
cord-002728-6oyw5sqv	77	31	inferences	inference	NNS
cord-002728-6oyw5sqv	77	32	can	can	MD
cord-002728-6oyw5sqv	77	33	be	be	VB
cord-002728-6oyw5sqv	77	34	made	make	VBN
cord-002728-6oyw5sqv	77	35	regarding	regard	VBG
cord-002728-6oyw5sqv	77	36	sequence	sequence	NN
cord-002728-6oyw5sqv	77	37	data	datum	NNS
cord-002728-6oyw5sqv	77	38	and	and	CC
cord-002728-6oyw5sqv	77	39	host	host	NN
cord-002728-6oyw5sqv	77	40	phylogeny	phylogeny	NN
cord-002728-6oyw5sqv	77	41	(	(	-LRB-
cord-002728-6oyw5sqv	77	42	only	only	RB
cord-002728-6oyw5sqv	77	43	four	four	CD
cord-002728-6oyw5sqv	77	44	such	such	JJ
cord-002728-6oyw5sqv	77	45	"	"	``
cord-002728-6oyw5sqv	77	46	driver	driver	NN
cord-002728-6oyw5sqv	77	47	sequences	sequence	NNS
cord-002728-6oyw5sqv	77	48	"	"	''
cord-002728-6oyw5sqv	77	49	were	be	VBD
cord-002728-6oyw5sqv	77	50	required	require	VBN
cord-002728-6oyw5sqv	77	51	in	in	IN
cord-002728-6oyw5sqv	77	52	the	the	DT
cord-002728-6oyw5sqv	77	53	Bacteroidales	Bacteroidales	NNP
cord-002728-6oyw5sqv	77	54	study	study	NN
cord-002728-6oyw5sqv	77	55	)	)	-RRB-
cord-002728-6oyw5sqv	77	56	.	.	.
cord-002728-6oyw5sqv	78	1	21	21	CD
cord-002728-6oyw5sqv	79	1	Using	use	VBG
cord-002728-6oyw5sqv	79	2	co	co	JJ
cord-002728-6oyw5sqv	79	3	-	-	JJ
cord-002728-6oyw5sqv	79	4	occurrence	occurrence	JJ
cord-002728-6oyw5sqv	79	5	profiling	profiling	NN
cord-002728-6oyw5sqv	79	6	,	,	,
cord-002728-6oyw5sqv	79	7	crAssphage	crAssphage	NNP
cord-002728-6oyw5sqv	79	8	was	be	VBD
cord-002728-6oyw5sqv	79	9	identified	identify	VBN
cord-002728-6oyw5sqv	79	10	in	in	IN
cord-002728-6oyw5sqv	79	11	publicly	publicly	RB
cord-002728-6oyw5sqv	79	12	available	available	JJ
cord-002728-6oyw5sqv	79	13	metagenomes	metagenomes	NNP
cord-002728-6oyw5sqv	79	14	,	,	,
cord-002728-6oyw5sqv	79	15	and	and	CC
cord-002728-6oyw5sqv	79	16	by	by	IN
cord-002728-6oyw5sqv	79	17	CRISPR	CRISPR	NNP
cord-002728-6oyw5sqv	79	18	analysis	analysis	NN
cord-002728-6oyw5sqv	79	19	and	and	CC
cord-002728-6oyw5sqv	79	20	co	co	NN
cord-002728-6oyw5sqv	79	21	-	-	JJ
cord-002728-6oyw5sqv	79	22	occurrence	occurrence	JJ
cord-002728-6oyw5sqv	79	23	profiling	profiling	NN
cord-002728-6oyw5sqv	79	24	predicted	predict	VBN
cord-002728-6oyw5sqv	79	25	to	to	TO
cord-002728-6oyw5sqv	79	26	infect	infect	VB
cord-002728-6oyw5sqv	79	27	Bacteroides	Bacteroides	NNP
cord-002728-6oyw5sqv	79	28	or	or	CC
cord-002728-6oyw5sqv	79	29	Prevotella	Prevotella	NNP
cord-002728-6oyw5sqv	79	30	spp	spp	NNS
cord-002728-6oyw5sqv	79	31	.	.	.
cord-002728-6oyw5sqv	80	1	22	22	CD
cord-002728-6oyw5sqv	80	2	Assembly	assembly	NN
cord-002728-6oyw5sqv	80	3	of	of	IN
cord-002728-6oyw5sqv	80	4	sequence	sequence	NN
cord-002728-6oyw5sqv	80	5	data	datum	NNS
cord-002728-6oyw5sqv	80	6	from	from	IN
cord-002728-6oyw5sqv	80	7	four	four	CD
cord-002728-6oyw5sqv	80	8	deep	deep	RB
cord-002728-6oyw5sqv	80	9	-	-	HYPH
cord-002728-6oyw5sqv	80	10	sequenced	sequence	VBN
cord-002728-6oyw5sqv	80	11	DNA	dna	NN
cord-002728-6oyw5sqv	80	12	viromes	virome	NNS
cord-002728-6oyw5sqv	80	13	(	(	-LRB-
cord-002728-6oyw5sqv	80	14	8.1	8.1	CD
cord-002728-6oyw5sqv	80	15	Gb	Gb	NNP
cord-002728-6oyw5sqv	80	16	sequence	sequence	NN
cord-002728-6oyw5sqv	80	17	data	datum	NNS
cord-002728-6oyw5sqv	80	18	in	in	IN
cord-002728-6oyw5sqv	80	19	total	total	NN
cord-002728-6oyw5sqv	80	20	)	)	-RRB-
cord-002728-6oyw5sqv	80	21	from	from	IN
cord-002728-6oyw5sqv	80	22	two	two	CD
cord-002728-6oyw5sqv	80	23	healthy	healthy	JJ
cord-002728-6oyw5sqv	80	24	individuals	individual	NNS
cord-002728-6oyw5sqv	80	25	led	lead	VBD
cord-002728-6oyw5sqv	80	26	to	to	IN
cord-002728-6oyw5sqv	80	27	recovery	recovery	NN
cord-002728-6oyw5sqv	80	28	of	of	IN
cord-002728-6oyw5sqv	80	29	4301	4301	CD
cord-002728-6oyw5sqv	80	30	contigs	contigs	NNP
cord-002728-6oyw5sqv	80	31	,	,	,
cord-002728-6oyw5sqv	80	32	representing	represent	VBG
cord-002728-6oyw5sqv	80	33	72	72	CD
cord-002728-6oyw5sqv	80	34	complete	complete	JJ
cord-002728-6oyw5sqv	80	35	phage	phage	NN
cord-002728-6oyw5sqv	80	36	genomes	genome	NNS
cord-002728-6oyw5sqv	80	37	plus	plus	CC
cord-002728-6oyw5sqv	80	38	potentially	potentially	RB
cord-002728-6oyw5sqv	80	39	complete	complete	JJ
cord-002728-6oyw5sqv	80	40	and	and	CC
cord-002728-6oyw5sqv	80	41	partial	partial	JJ
cord-002728-6oyw5sqv	80	42	phage	phage	NN
cord-002728-6oyw5sqv	80	43	genomes	genome	NNS
cord-002728-6oyw5sqv	80	44	.	.	.
cord-002728-6oyw5sqv	81	1	28	28	CD
cord-002728-6oyw5sqv	81	2	mapped	map	VBD
cord-002728-6oyw5sqv	81	3	to	to	IN
cord-002728-6oyw5sqv	81	4	160	160	CD
cord-002728-6oyw5sqv	81	5	contigs	contig	NNS
cord-002728-6oyw5sqv	81	6	.	.	.
cord-002728-6oyw5sqv	82	1	A	a	DT
cord-002728-6oyw5sqv	82	2	consortium	consortium	NN
cord-002728-6oyw5sqv	82	3	of	of	IN
cord-002728-6oyw5sqv	82	4	155	155	CD
cord-002728-6oyw5sqv	82	5	phages	phage	NNS
cord-002728-6oyw5sqv	82	6	contributed	contribute	VBD
cord-002728-6oyw5sqv	82	7	to	to	IN
cord-002728-6oyw5sqv	82	8	the	the	DT
cord-002728-6oyw5sqv	82	9	"	"	``
cord-002728-6oyw5sqv	82	10	healthy	healthy	JJ
cord-002728-6oyw5sqv	82	11	gut	gut	NN
cord-002728-6oyw5sqv	82	12	phageome	phageome	NN
cord-002728-6oyw5sqv	82	13	"	"	''
cord-002728-6oyw5sqv	82	14	(	(	-LRB-
cord-002728-6oyw5sqv	82	15	HGP	HGP	NNP
cord-002728-6oyw5sqv	82	16	)	)	-RRB-
cord-002728-6oyw5sqv	82	17	,	,	,
cord-002728-6oyw5sqv	82	18	though	though	IN
cord-002728-6oyw5sqv	82	19	only	only	RB
cord-002728-6oyw5sqv	82	20	23	23	CD
cord-002728-6oyw5sqv	82	21	phages	phage	NNS
cord-002728-6oyw5sqv	82	22	were	be	VBD
cord-002728-6oyw5sqv	82	23	present	present	JJ
cord-002728-6oyw5sqv	82	24	in	in	IN
cord-002728-6oyw5sqv	82	25	>	>	$
cord-002728-6oyw5sqv	82	26	50	50	CD
cord-002728-6oyw5sqv	82	27	%	%	NN
cord-002728-6oyw5sqv	82	28	of	of	IN
cord-002728-6oyw5sqv	82	29	samples	sample	NNS
cord-002728-6oyw5sqv	82	30	(	(	-LRB-
cord-002728-6oyw5sqv	82	31	"	"	``
cord-002728-6oyw5sqv	82	32	core	core	NN
cord-002728-6oyw5sqv	82	33	"	"	''
cord-002728-6oyw5sqv	82	34	phages	phage	NNS
cord-002728-6oyw5sqv	82	35	,	,	,
cord-002728-6oyw5sqv	82	36	including	include	VBG
cord-002728-6oyw5sqv	82	37	crAssphage	crassphage	NN
cord-002728-6oyw5sqv	82	38	and	and	CC
cord-002728-6oyw5sqv	82	39	nine	nine	CD
cord-002728-6oyw5sqv	82	40	other	other	JJ
cord-002728-6oyw5sqv	82	41	complete	complete	JJ
cord-002728-6oyw5sqv	82	42	genomes	genome	NNS
cord-002728-6oyw5sqv	82	43	)	)	-RRB-
cord-002728-6oyw5sqv	82	44	,	,	,
cord-002728-6oyw5sqv	82	45	and	and	CC
cord-002728-6oyw5sqv	82	46	132	132	CD
cord-002728-6oyw5sqv	82	47	were	be	VBD
cord-002728-6oyw5sqv	82	48	present	present	JJ
cord-002728-6oyw5sqv	82	49	in	in	IN
cord-002728-6oyw5sqv	82	50	20%-50	20%-50	CD
cord-002728-6oyw5sqv	82	51	%	%	NN
cord-002728-6oyw5sqv	82	52	of	of	IN
cord-002728-6oyw5sqv	82	53	samples	sample	NNS
cord-002728-6oyw5sqv	82	54	(	(	-LRB-
cord-002728-6oyw5sqv	82	55	"	"	``
cord-002728-6oyw5sqv	82	56	common	common	JJ
cord-002728-6oyw5sqv	82	57	"	"	''
cord-002728-6oyw5sqv	82	58	phages	phage	NNS
cord-002728-6oyw5sqv	82	59	)	)	-RRB-
cord-002728-6oyw5sqv	82	60	;	;	:
cord-002728-6oyw5sqv	82	61	1679	1679	CD
cord-002728-6oyw5sqv	82	62	were	be	VBD
cord-002728-6oyw5sqv	82	63	present	present	JJ
cord-002728-6oyw5sqv	82	64	in	in	IN
cord-002728-6oyw5sqv	82	65	2%-19	2%-19	CD
cord-002728-6oyw5sqv	82	66	%	%	NN
cord-002728-6oyw5sqv	82	67	(	(	-LRB-
cord-002728-6oyw5sqv	82	68	"	"	``
cord-002728-6oyw5sqv	82	69	low	low	JJ
cord-002728-6oyw5sqv	82	70	overlap	overlap	NN
cord-002728-6oyw5sqv	82	71	"	"	''
cord-002728-6oyw5sqv	82	72	phages	phage	NNS
cord-002728-6oyw5sqv	82	73	)	)	-RRB-
cord-002728-6oyw5sqv	82	74	.	.	.
cord-002728-6oyw5sqv	83	1	The	the	DT
cord-002728-6oyw5sqv	83	2	HGP	HGP	NNP
cord-002728-6oyw5sqv	83	3	represented	represent	VBD
cord-002728-6oyw5sqv	83	4	only	only	RB
cord-002728-6oyw5sqv	83	5	4	4	CD
cord-002728-6oyw5sqv	83	6	%	%	NN
cord-002728-6oyw5sqv	83	7	of	of	IN
cord-002728-6oyw5sqv	83	8	the	the	DT
cord-002728-6oyw5sqv	83	9	total	total	JJ
cord-002728-6oyw5sqv	83	10	phage	phage	NN
cord-002728-6oyw5sqv	83	11	community	community	NN
cord-002728-6oyw5sqv	83	12	,	,	,
cord-002728-6oyw5sqv	83	13	with	with	IN
cord-002728-6oyw5sqv	83	14	the	the	DT
cord-002728-6oyw5sqv	83	15	expectation	expectation	NN
cord-002728-6oyw5sqv	83	16	that	that	IN
cord-002728-6oyw5sqv	83	17	the	the	DT
cord-002728-6oyw5sqv	83	18	HGP	HGP	NNP
cord-002728-6oyw5sqv	83	19	will	will	MD
cord-002728-6oyw5sqv	83	20	increase	increase	VB
cord-002728-6oyw5sqv	83	21	in	in	IN
cord-002728-6oyw5sqv	83	22	size	size	NN
cord-002728-6oyw5sqv	83	23	by	by	IN
cord-002728-6oyw5sqv	83	24	analysing	analyse	VBG
cord-002728-6oyw5sqv	83	25	additional	additional	JJ
cord-002728-6oyw5sqv	83	26	healthy	healthy	JJ
cord-002728-6oyw5sqv	83	27	individuals	individual	NNS
cord-002728-6oyw5sqv	83	28	using	use	VBG
cord-002728-6oyw5sqv	83	29	deep	deep	JJ
cord-002728-6oyw5sqv	83	30	sequencing	sequencing	NN
cord-002728-6oyw5sqv	83	31	.	.	.
cord-002728-6oyw5sqv	84	1	28	28	CD
cord-002728-6oyw5sqv	85	1	Although	although	IN
cord-002728-6oyw5sqv	85	2	it	-PRON-	PRP
cord-002728-6oyw5sqv	85	3	has	have	VBZ
cord-002728-6oyw5sqv	85	4	been	be	VBN
cord-002728-6oyw5sqv	85	5	proposed	propose	VBN
cord-002728-6oyw5sqv	85	6	the	the	DT
cord-002728-6oyw5sqv	85	7	HGP	HGP	NNP
cord-002728-6oyw5sqv	85	8	may	may	MD
cord-002728-6oyw5sqv	85	9	play	play	VB
cord-002728-6oyw5sqv	85	10	a	a	DT
cord-002728-6oyw5sqv	85	11	role	role	NN
cord-002728-6oyw5sqv	85	12	in	in	IN
cord-002728-6oyw5sqv	85	13	maintaining	maintain	VBG
cord-002728-6oyw5sqv	85	14	and	and	CC
cord-002728-6oyw5sqv	85	15	possibly	possibly	RB
cord-002728-6oyw5sqv	85	16	restoring	restore	VBG
cord-002728-6oyw5sqv	85	17	a	a	DT
cord-002728-6oyw5sqv	85	18	dysbiotic	dysbiotic	JJ
cord-002728-6oyw5sqv	85	19	microbiota	microbiota	NN
cord-002728-6oyw5sqv	85	20	,	,	,
cord-002728-6oyw5sqv	85	21	30	30	CD
cord-002728-6oyw5sqv	85	22	(	(	-LRB-
cord-002728-6oyw5sqv	85	23	Table	Table	NNP
cord-002728-6oyw5sqv	85	24	S1	S1	NNP
cord-002728-6oyw5sqv	85	25	)	)	-RRB-
cord-002728-6oyw5sqv	85	26	.	.	.
cord-002728-6oyw5sqv	86	1	Later	later	RB
cord-002728-6oyw5sqv	86	2	work	work	VB
cord-002728-6oyw5sqv	86	3	on	on	IN
cord-002728-6oyw5sqv	86	4	oral	oral	JJ
cord-002728-6oyw5sqv	86	5	and	and	CC
cord-002728-6oyw5sqv	86	6	faecal	faecal	JJ
cord-002728-6oyw5sqv	86	7	viromes	virome	NNS
cord-002728-6oyw5sqv	86	8	of	of	IN
cord-002728-6oyw5sqv	86	9	20	20	CD
cord-002728-6oyw5sqv	86	10	individuals	individual	NNS
cord-002728-6oyw5sqv	86	11	over	over	IN
cord-002728-6oyw5sqv	86	12	a	a	DT
cord-002728-6oyw5sqv	86	13	6-month	6-month	CD
cord-002728-6oyw5sqv	86	14	period	period	NN
cord-002728-6oyw5sqv	86	15	confirmed	confirm	VBD
cord-002728-6oyw5sqv	86	16	this	this	DT
cord-002728-6oyw5sqv	86	17	,	,	,
cord-002728-6oyw5sqv	86	18	demonstrating	demonstrate	VBG
cord-002728-6oyw5sqv	86	19	phages	phage	NNS
cord-002728-6oyw5sqv	86	20	were	be	VBD
cord-002728-6oyw5sqv	86	21	persistent	persistent	JJ
cord-002728-6oyw5sqv	86	22	in	in	IN
cord-002728-6oyw5sqv	86	23	these	these	DT
cord-002728-6oyw5sqv	86	24	viromes	virome	NNS
cord-002728-6oyw5sqv	86	25	and	and	CC
cord-002728-6oyw5sqv	86	26	readily	readily	RB
cord-002728-6oyw5sqv	86	27	shared	share	VBN
cord-002728-6oyw5sqv	86	28	among	among	IN
cord-002728-6oyw5sqv	86	29	related	related	JJ
cord-002728-6oyw5sqv	86	30	and	and	CC
cord-002728-6oyw5sqv	86	31	unrelated	unrelated	JJ
cord-002728-6oyw5sqv	86	32	members	member	NNS
cord-002728-6oyw5sqv	86	33	of	of	IN
cord-002728-6oyw5sqv	86	34	the	the	DT
cord-002728-6oyw5sqv	86	35	same	same	JJ
cord-002728-6oyw5sqv	86	36	household	household	NN
cord-002728-6oyw5sqv	86	37	.	.	.
cord-002728-6oyw5sqv	87	1	38	38	CD
cord-002728-6oyw5sqv	87	2	Sharing	sharing	NN
cord-002728-6oyw5sqv	87	3	of	of	IN
cord-002728-6oyw5sqv	87	4	phages	phage	NNS
cord-002728-6oyw5sqv	87	5	encoding	encode	VBG
cord-002728-6oyw5sqv	87	6	virulence	virulence	NN
cord-002728-6oyw5sqv	87	7	or	or	CC
cord-002728-6oyw5sqv	87	8	antibiotic	antibiotic	NN
cord-002728-6oyw5sqv	87	9	-	-	HYPH
cord-002728-6oyw5sqv	87	10	resistance	resistance	NN
cord-002728-6oyw5sqv	87	11	genes	gene	NNS
cord-002728-6oyw5sqv	87	12	has	have	VBZ
cord-002728-6oyw5sqv	87	13	implications	implication	NNS
cord-002728-6oyw5sqv	87	14	for	for	IN
cord-002728-6oyw5sqv	87	15	shaping	shape	VBG
cord-002728-6oyw5sqv	87	16	of	of	IN
cord-002728-6oyw5sqv	87	17	microbiomes	microbiome	NNS
cord-002728-6oyw5sqv	87	18	of	of	IN
cord-002728-6oyw5sqv	87	19	those	those	DT
cord-002728-6oyw5sqv	87	20	in	in	IN
cord-002728-6oyw5sqv	87	21	close	close	JJ
cord-002728-6oyw5sqv	87	22	contact	contact	NN
cord-002728-6oyw5sqv	87	23	with	with	IN
cord-002728-6oyw5sqv	87	24	one	one	CD
cord-002728-6oyw5sqv	87	25	another	another	DT
cord-002728-6oyw5sqv	87	26	,	,	,
cord-002728-6oyw5sqv	87	27	and	and	CC
cord-002728-6oyw5sqv	87	28	warrants	warrant	NNS
cord-002728-6oyw5sqv	87	29	further	further	JJ
cord-002728-6oyw5sqv	87	30	study	study	NN
cord-002728-6oyw5sqv	87	31	.	.	.
cord-002728-6oyw5sqv	88	1	With	with	IN
cord-002728-6oyw5sqv	88	2	respect	respect	NN
cord-002728-6oyw5sqv	88	3	to	to	IN
cord-002728-6oyw5sqv	88	4	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	88	5	-	-	HYPH
cord-002728-6oyw5sqv	88	6	resistance	resistance	NN
cord-002728-6oyw5sqv	88	7	genes	gene	NNS
cord-002728-6oyw5sqv	88	8	,	,	,
cord-002728-6oyw5sqv	88	9	their	-PRON-	PRP$
cord-002728-6oyw5sqv	88	10	presence	presence	NN
cord-002728-6oyw5sqv	88	11	may	may	MD
cord-002728-6oyw5sqv	88	12	have	have	VB
cord-002728-6oyw5sqv	88	13	been	be	VBN
cord-002728-6oyw5sqv	88	14	over	over	RB
cord-002728-6oyw5sqv	88	15	-	-	HYPH
cord-002728-6oyw5sqv	88	16	estimated	estimate	VBN
cord-002728-6oyw5sqv	88	17	in	in	IN
cord-002728-6oyw5sqv	88	18	human	human	JJ
cord-002728-6oyw5sqv	88	19	viromes	virome	NNS
cord-002728-6oyw5sqv	88	20	11	11	CD
cord-002728-6oyw5sqv	88	21	,	,	,
cord-002728-6oyw5sqv	88	22	20	20	CD
cord-002728-6oyw5sqv	88	23	,	,	,
cord-002728-6oyw5sqv	88	24	27	27	CD
cord-002728-6oyw5sqv	88	25	,	,	,
cord-002728-6oyw5sqv	88	26	31	31	CD
cord-002728-6oyw5sqv	88	27	,	,	,
cord-002728-6oyw5sqv	88	28	35	35	CD
cord-002728-6oyw5sqv	88	29	,	,	,
cord-002728-6oyw5sqv	88	30	37	37	CD
cord-002728-6oyw5sqv	88	31	as	as	IN
cord-002728-6oyw5sqv	88	32	these	these	DT
cord-002728-6oyw5sqv	88	33	entities	entity	NNS
cord-002728-6oyw5sqv	88	34	are	be	VBP
cord-002728-6oyw5sqv	88	35	thought	think	VBN
cord-002728-6oyw5sqv	88	36	to	to	TO
cord-002728-6oyw5sqv	88	37	be	be	VB
cord-002728-6oyw5sqv	88	38	rarely	rarely	RB
cord-002728-6oyw5sqv	88	39	encoded	encode	VBN
cord-002728-6oyw5sqv	88	40	in	in	IN
cord-002728-6oyw5sqv	88	41	phages	phage	NNS
cord-002728-6oyw5sqv	88	42	.	.	.
cord-002728-6oyw5sqv	89	1	39	39	CD
cord-002728-6oyw5sqv	89	2	Consequently	consequently	RB
cord-002728-6oyw5sqv	89	3	,	,	,
cord-002728-6oyw5sqv	89	4	care	care	NN
cord-002728-6oyw5sqv	89	5	should	should	MD
cord-002728-6oyw5sqv	89	6	be	be	VB
cord-002728-6oyw5sqv	89	7	taken	take	VBN
cord-002728-6oyw5sqv	89	8	when	when	WRB
cord-002728-6oyw5sqv	89	9	analysing	analyse	VBG
cord-002728-6oyw5sqv	89	10	data	datum	NNS
cord-002728-6oyw5sqv	89	11	:	:	:
cord-002728-6oyw5sqv	89	12	proper	proper	JJ
cord-002728-6oyw5sqv	89	13	in	in	IN
cord-002728-6oyw5sqv	89	14	silico	silico	NN
cord-002728-6oyw5sqv	89	15	checks	check	NNS
cord-002728-6oyw5sqv	89	16	with	with	IN
cord-002728-6oyw5sqv	89	17	conservative	conservative	JJ
cord-002728-6oyw5sqv	89	18	cut	cut	VBN
cord-002728-6oyw5sqv	89	19	-	-	HYPH
cord-002728-6oyw5sqv	89	20	offs	off	NNS
cord-002728-6oyw5sqv	89	21	are	be	VBP
cord-002728-6oyw5sqv	89	22	required	require	VBN
cord-002728-6oyw5sqv	89	23	to	to	TO
cord-002728-6oyw5sqv	89	24	refine	refine	VB
cord-002728-6oyw5sqv	89	25	functional	functional	JJ
cord-002728-6oyw5sqv	89	26	assignments	assignment	NNS
cord-002728-6oyw5sqv	89	27	and	and	CC
cord-002728-6oyw5sqv	89	28	avoid	avoid	VB
cord-002728-6oyw5sqv	89	29	over	over	IN
cord-002728-6oyw5sqv	89	30	-	-	HYPH
cord-002728-6oyw5sqv	89	31	interpretation	interpretation	NN
cord-002728-6oyw5sqv	89	32	of	of	IN
cord-002728-6oyw5sqv	89	33	data	datum	NNS
cord-002728-6oyw5sqv	89	34	.	.	.
cord-002728-6oyw5sqv	90	1	39	39	CD
cord-002728-6oyw5sqv	90	2	and	and	CC
cord-002728-6oyw5sqv	90	3	geminiviruses	geminiviruse	NNS
cord-002728-6oyw5sqv	90	4	were	be	VBD
cord-002728-6oyw5sqv	90	5	detected	detect	VBN
cord-002728-6oyw5sqv	90	6	in	in	IN
cord-002728-6oyw5sqv	90	7	at	at	RB
cord-002728-6oyw5sqv	90	8	least	least	RBS
cord-002728-6oyw5sqv	90	9	one	one	CD
cord-002728-6oyw5sqv	90	10	twin	twin	NN
cord-002728-6oyw5sqv	90	11	of	of	IN
cord-002728-6oyw5sqv	90	12	each	each	DT
cord-002728-6oyw5sqv	90	13	pair	pair	NN
cord-002728-6oyw5sqv	90	14	between	between	IN
cord-002728-6oyw5sqv	90	15	months	month	NNS
cord-002728-6oyw5sqv	90	16	3	3	CD
cord-002728-6oyw5sqv	90	17	and	and	CC
cord-002728-6oyw5sqv	90	18	24	24	CD
cord-002728-6oyw5sqv	90	19	of	of	IN
cord-002728-6oyw5sqv	90	20	the	the	DT
cord-002728-6oyw5sqv	90	21	study	study	NN
cord-002728-6oyw5sqv	90	22	.	.	.
cord-002728-6oyw5sqv	91	1	46	46	CD
cord-002728-6oyw5sqv	91	2	Anelloviruses	Anelloviruses	NNPS
cord-002728-6oyw5sqv	91	3	,	,	,
cord-002728-6oyw5sqv	91	4	associated	associate	VBN
cord-002728-6oyw5sqv	91	5	with	with	IN
cord-002728-6oyw5sqv	91	6	host	host	NN
cord-002728-6oyw5sqv	91	7	immune	immune	JJ
cord-002728-6oyw5sqv	91	8	status	status	NN
cord-002728-6oyw5sqv	91	9	,	,	,
cord-002728-6oyw5sqv	91	10	were	be	VBD
cord-002728-6oyw5sqv	91	11	most	most	RBS
cord-002728-6oyw5sqv	91	12	prevalent	prevalent	JJ
cord-002728-6oyw5sqv	91	13	from	from	IN
cord-002728-6oyw5sqv	91	14	3	3	CD
cord-002728-6oyw5sqv	91	15	months	month	NNS
cord-002728-6oyw5sqv	91	16	of	of	IN
cord-002728-6oyw5sqv	91	17	age	age	NN
cord-002728-6oyw5sqv	91	18	and	and	CC
cord-002728-6oyw5sqv	91	19	highly	highly	RB
cord-002728-6oyw5sqv	91	20	divergent	divergent	JJ
cord-002728-6oyw5sqv	91	21	from	from	IN
cord-002728-6oyw5sqv	91	22	known	know	VBN
cord-002728-6oyw5sqv	91	23	anelloviruses	anelloviruse	NNS
cord-002728-6oyw5sqv	91	24	,	,	,
cord-002728-6oyw5sqv	91	25	with	with	IN
cord-002728-6oyw5sqv	91	26	their	-PRON-	PRP$
cord-002728-6oyw5sqv	91	27	abundance	abundance	NN
cord-002728-6oyw5sqv	91	28	peaking	peak	VBG
cord-002728-6oyw5sqv	91	29	at	at	IN
cord-002728-6oyw5sqv	91	30	6	6	CD
cord-002728-6oyw5sqv	91	31	-	-	SYM
cord-002728-6oyw5sqv	91	32	12	12	CD
cord-002728-6oyw5sqv	91	33	months	month	NNS
cord-002728-6oyw5sqv	91	34	of	of	IN
cord-002728-6oyw5sqv	91	35	age	age	NN
cord-002728-6oyw5sqv	91	36	.	.	.
cord-002728-6oyw5sqv	92	1	The	the	DT
cord-002728-6oyw5sqv	92	2	same	same	JJ
cord-002728-6oyw5sqv	92	3	anelloviruses	anelloviruse	NNS
cord-002728-6oyw5sqv	92	4	were	be	VBD
cord-002728-6oyw5sqv	92	5	detected	detect	VBN
cord-002728-6oyw5sqv	92	6	in	in	IN
cord-002728-6oyw5sqv	92	7	faecal	faecal	JJ
cord-002728-6oyw5sqv	92	8	samples	sample	NNS
cord-002728-6oyw5sqv	92	9	of	of	IN
cord-002728-6oyw5sqv	92	10	the	the	DT
cord-002728-6oyw5sqv	92	11	same	same	JJ
cord-002728-6oyw5sqv	92	12	infant	infant	NN
cord-002728-6oyw5sqv	92	13	collected	collect	VBD
cord-002728-6oyw5sqv	92	14	12	12	CD
cord-002728-6oyw5sqv	92	15	months	month	NNS
cord-002728-6oyw5sqv	92	16	apart	apart	RB
cord-002728-6oyw5sqv	92	17	,	,	,
cord-002728-6oyw5sqv	92	18	suggesting	suggest	VBG
cord-002728-6oyw5sqv	92	19	a	a	DT
cord-002728-6oyw5sqv	92	20	persistent	persistent	JJ
cord-002728-6oyw5sqv	92	21	or	or	CC
cord-002728-6oyw5sqv	92	22	stable	stable	JJ
cord-002728-6oyw5sqv	92	23	source	source	NN
cord-002728-6oyw5sqv	92	24	of	of	IN
cord-002728-6oyw5sqv	92	25	recurring	recur	VBG
cord-002728-6oyw5sqv	92	26	infection	infection	NN
cord-002728-6oyw5sqv	92	27	.	.	.
cord-002728-6oyw5sqv	93	1	46	46	CD
cord-002728-6oyw5sqv	94	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	94	2	was	be	VBD
cord-002728-6oyw5sqv	94	3	speculated	speculate	VBN
cord-002728-6oyw5sqv	94	4	the	the	DT
cord-002728-6oyw5sqv	94	5	increase	increase	NN
cord-002728-6oyw5sqv	94	6	in	in	IN
cord-002728-6oyw5sqv	94	7	anelloviruses	anelloviruse	NNS
cord-002728-6oyw5sqv	94	8	between	between	IN
cord-002728-6oyw5sqv	94	9	6	6	CD
cord-002728-6oyw5sqv	94	10	46	46	CD
cord-002728-6oyw5sqv	95	1	The	the	DT
cord-002728-6oyw5sqv	95	2	initially	initially	RB
cord-002728-6oyw5sqv	95	3	high	high	JJ
cord-002728-6oyw5sqv	95	4	phage	phage	NN
cord-002728-6oyw5sqv	95	5	population	population	NN
cord-002728-6oyw5sqv	95	6	is	be	VBZ
cord-002728-6oyw5sqv	95	7	unsustainable	unsustainable	JJ
cord-002728-6oyw5sqv	95	8	because	because	IN
cord-002728-6oyw5sqv	95	9	of	of	IN
cord-002728-6oyw5sqv	95	10	low	low	JJ
cord-002728-6oyw5sqv	95	11	numbers	number	NNS
cord-002728-6oyw5sqv	95	12	of	of	IN
cord-002728-6oyw5sqv	95	13	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	95	14	colonising	colonise	VBG
cord-002728-6oyw5sqv	95	15	the	the	DT
cord-002728-6oyw5sqv	95	16	GI	GI	NNP
cord-002728-6oyw5sqv	95	17	tract	tract	NN
cord-002728-6oyw5sqv	95	18	.	.	.
cord-002728-6oyw5sqv	96	1	Consequently	consequently	RB
cord-002728-6oyw5sqv	96	2	,	,	,
cord-002728-6oyw5sqv	96	3	the	the	DT
cord-002728-6oyw5sqv	96	4	phage	phage	NN
cord-002728-6oyw5sqv	96	5	assemblage	assemblage	NN
cord-002728-6oyw5sqv	96	6	shrinks	shrink	VBZ
cord-002728-6oyw5sqv	96	7	in	in	IN
cord-002728-6oyw5sqv	96	8	size	size	NN
cord-002728-6oyw5sqv	96	9	and	and	CC
cord-002728-6oyw5sqv	96	10	diversity	diversity	NN
cord-002728-6oyw5sqv	96	11	,	,	,
cord-002728-6oyw5sqv	96	12	relieving	relieve	VBG
cord-002728-6oyw5sqv	96	13	pressure	pressure	NN
cord-002728-6oyw5sqv	96	14	on	on	IN
cord-002728-6oyw5sqv	96	15	the	the	DT
cord-002728-6oyw5sqv	96	16	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	96	17	community	community	NN
cord-002728-6oyw5sqv	96	18	and	and	CC
cord-002728-6oyw5sqv	96	19	allowing	allow	VBG
cord-002728-6oyw5sqv	96	20	it	-PRON-	PRP
cord-002728-6oyw5sqv	96	21	to	to	TO
cord-002728-6oyw5sqv	96	22	establish	establish	VB
cord-002728-6oyw5sqv	96	23	and	and	CC
cord-002728-6oyw5sqv	96	24	colonise	colonise	VB
cord-002728-6oyw5sqv	96	25	the	the	DT
cord-002728-6oyw5sqv	96	26	gut	gut	NN
cord-002728-6oyw5sqv	96	27	.	.	.
cord-002728-6oyw5sqv	97	1	Differences	difference	NNS
cord-002728-6oyw5sqv	97	2	in	in	IN
cord-002728-6oyw5sqv	97	3	birth	birth	NN
cord-002728-6oyw5sqv	97	4	mode	mode	NN
cord-002728-6oyw5sqv	98	1	(	(	-LRB-
cord-002728-6oyw5sqv	98	2	Caesarean	Caesarean	NNP
cord-002728-6oyw5sqv	98	3	vs	vs	IN
cord-002728-6oyw5sqv	98	4	vaginal	vaginal	JJ
cord-002728-6oyw5sqv	98	5	delivery	delivery	NN
cord-002728-6oyw5sqv	98	6	)	)	-RRB-
cord-002728-6oyw5sqv	98	7	and	and	CC
cord-002728-6oyw5sqv	98	8	diet	diet	NN
cord-002728-6oyw5sqv	98	9	(	(	-LRB-
cord-002728-6oyw5sqv	98	10	breast	breast	NN
cord-002728-6oyw5sqv	98	11	-	-	HYPH
cord-002728-6oyw5sqv	98	12	vs	vs	RP
cord-002728-6oyw5sqv	98	13	formula	formula	NN
cord-002728-6oyw5sqv	98	14	-	-	HYPH
cord-002728-6oyw5sqv	98	15	feeding	feeding	NN
cord-002728-6oyw5sqv	98	16	;	;	:
cord-002728-6oyw5sqv	98	17	age	age	NN
cord-002728-6oyw5sqv	98	18	at	at	IN
cord-002728-6oyw5sqv	98	19	which	which	WDT
cord-002728-6oyw5sqv	98	20	weaning	weaning	NN
cord-002728-6oyw5sqv	98	21	began	begin	VBD
cord-002728-6oyw5sqv	98	22	)	)	-RRB-
cord-002728-6oyw5sqv	98	23	were	be	VBD
cord-002728-6oyw5sqv	98	24	confounders	confounder	NNS
cord-002728-6oyw5sqv	98	25	in	in	IN
cord-002728-6oyw5sqv	98	26	the	the	DT
cord-002728-6oyw5sqv	98	27	study	study	NN
cord-002728-6oyw5sqv	98	28	of	of	IN
cord-002728-6oyw5sqv	98	29	Lim	Lim	NNP
cord-002728-6oyw5sqv	98	30	et	et	NNP
cord-002728-6oyw5sqv	98	31	al	al	NNP
cord-002728-6oyw5sqv	98	32	.	.	.
cord-002728-6oyw5sqv	99	1	46	46	CD
cord-002728-6oyw5sqv	99	2	51	51	CD
cord-002728-6oyw5sqv	99	3	,	,	,
cord-002728-6oyw5sqv	99	4	54	54	CD
cord-002728-6oyw5sqv	99	5	Circulating	circulate	VBG
cord-002728-6oyw5sqv	99	6	phages	phage	NNS
cord-002728-6oyw5sqv	99	7	have	have	VBP
cord-002728-6oyw5sqv	99	8	also	also	RB
cord-002728-6oyw5sqv	99	9	been	be	VBN
cord-002728-6oyw5sqv	99	10	detected	detect	VBN
cord-002728-6oyw5sqv	99	11	in	in	IN
cord-002728-6oyw5sqv	99	12	blood	blood	NN
cord-002728-6oyw5sqv	99	13	samples	sample	NNS
cord-002728-6oyw5sqv	99	14	after	after	IN
cord-002728-6oyw5sqv	99	15	oral	oral	JJ
cord-002728-6oyw5sqv	99	16	administration	administration	NN
cord-002728-6oyw5sqv	99	17	of	of	IN
cord-002728-6oyw5sqv	99	18	antibiotics	antibiotic	NNS
cord-002728-6oyw5sqv	99	19	to	to	IN
cord-002728-6oyw5sqv	99	20	patients	patient	NNS
cord-002728-6oyw5sqv	99	21	with	with	IN
cord-002728-6oyw5sqv	99	22	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	99	23	infections	infection	NNS
cord-002728-6oyw5sqv	99	24	,	,	,
cord-002728-6oyw5sqv	99	25	whereas	whereas	IN
cord-002728-6oyw5sqv	99	26	no	no	DT
cord-002728-6oyw5sqv	99	27	phages	phage	NNS
cord-002728-6oyw5sqv	99	28	could	could	MD
cord-002728-6oyw5sqv	99	29	be	be	VB
cord-002728-6oyw5sqv	99	30	detected	detect	VBN
cord-002728-6oyw5sqv	99	31	in	in	IN
cord-002728-6oyw5sqv	99	32	their	-PRON-	PRP$
cord-002728-6oyw5sqv	99	33	blood	blood	NN
cord-002728-6oyw5sqv	99	34	prior	prior	RB
cord-002728-6oyw5sqv	99	35	to	to	IN
cord-002728-6oyw5sqv	99	36	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	99	37	therapy	therapy	NN
cord-002728-6oyw5sqv	99	38	.	.	.
cord-002728-6oyw5sqv	100	1	51	51	CD
cord-002728-6oyw5sqv	101	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	101	2	is	be	VBZ
cord-002728-6oyw5sqv	101	3	not	not	RB
cord-002728-6oyw5sqv	101	4	known	know	VBN
cord-002728-6oyw5sqv	101	5	if	if	IN
cord-002728-6oyw5sqv	101	6	these	these	DT
cord-002728-6oyw5sqv	101	7	phages	phage	NNS
cord-002728-6oyw5sqv	101	8	were	be	VBD
cord-002728-6oyw5sqv	101	9	of	of	IN
cord-002728-6oyw5sqv	101	10	GI	GI	NNP
cord-002728-6oyw5sqv	101	11	origin	origin	NN
cord-002728-6oyw5sqv	101	12	.	.	.
cord-002728-6oyw5sqv	102	1	The	the	DT
cord-002728-6oyw5sqv	102	2	presence	presence	NN
cord-002728-6oyw5sqv	102	3	of	of	IN
cord-002728-6oyw5sqv	102	4	phages	phage	NNS
cord-002728-6oyw5sqv	102	5	in	in	IN
cord-002728-6oyw5sqv	102	6	the	the	DT
cord-002728-6oyw5sqv	102	7	peripheral	peripheral	JJ
cord-002728-6oyw5sqv	102	8	blood	blood	NN
cord-002728-6oyw5sqv	102	9	has	have	VBZ
cord-002728-6oyw5sqv	102	10	been	be	VBN
cord-002728-6oyw5sqv	102	11	termed	term	VBN
cord-002728-6oyw5sqv	102	12	"	"	``
cord-002728-6oyw5sqv	102	13	phagemia	phagemia	NN
cord-002728-6oyw5sqv	102	14	"	"	''
cord-002728-6oyw5sqv	102	15	.	.	.
cord-002728-6oyw5sqv	103	1	51	51	CD
cord-002728-6oyw5sqv	104	1	However	however	RB
cord-002728-6oyw5sqv	104	2	,	,	,
cord-002728-6oyw5sqv	104	3	whether	whether	IN
cord-002728-6oyw5sqv	104	4	the	the	DT
cord-002728-6oyw5sqv	104	5	blood	blood	NN
cord-002728-6oyw5sqv	104	6	contains	contain	VBZ
cord-002728-6oyw5sqv	104	7	its	-PRON-	PRP$
cord-002728-6oyw5sqv	104	8	own	own	JJ
cord-002728-6oyw5sqv	104	9	"	"	``
cord-002728-6oyw5sqv	104	10	baseline	baseline	JJ
cord-002728-6oyw5sqv	104	11	"	"	''
cord-002728-6oyw5sqv	104	12	VLP	VLP	NNP
cord-002728-6oyw5sqv	104	13	population	population	NN
cord-002728-6oyw5sqv	104	14	to	to	TO
cord-002728-6oyw5sqv	104	15	which	which	WDT
cord-002728-6oyw5sqv	104	16	the	the	DT
cord-002728-6oyw5sqv	104	17	GI	GI	NNP
cord-002728-6oyw5sqv	104	18	virome	virome	NN
cord-002728-6oyw5sqv	104	19	can	can	MD
cord-002728-6oyw5sqv	104	20	contribute	contribute	VB
cord-002728-6oyw5sqv	104	21	in	in	IN
cord-002728-6oyw5sqv	104	22	disease	disease	NN
cord-002728-6oyw5sqv	104	23	is	be	VBZ
cord-002728-6oyw5sqv	104	24	unknown	unknown	JJ
cord-002728-6oyw5sqv	104	25	.	.	.
cord-002728-6oyw5sqv	105	1	in	in	IN
cord-002728-6oyw5sqv	105	2	colonic	colonic	JJ
cord-002728-6oyw5sqv	105	3	biopsies	biopsy	NNS
cord-002728-6oyw5sqv	105	4	than	than	IN
cord-002728-6oyw5sqv	105	5	healthy	healthy	JJ
cord-002728-6oyw5sqv	105	6	individuals	individual	NNS
cord-002728-6oyw5sqv	105	7	(	(	-LRB-
cord-002728-6oyw5sqv	105	8	n	n	NN
cord-002728-6oyw5sqv	105	9	=	=	SYM
cord-002728-6oyw5sqv	105	10	10	10	CD
cord-002728-6oyw5sqv	105	11	)	)	-RRB-
cord-002728-6oyw5sqv	105	12	(	(	-LRB-
cord-002728-6oyw5sqv	105	13	2.9	2.9	CD
cord-002728-6oyw5sqv	105	14	9	9	CD
cord-002728-6oyw5sqv	105	15	10	10	CD
cord-002728-6oyw5sqv	105	16	9	9	CD
cord-002728-6oyw5sqv	105	17	vs	vs	IN
cord-002728-6oyw5sqv	105	18	1.2	1.2	CD
cord-002728-6oyw5sqv	105	19	9	9	CD
cord-002728-6oyw5sqv	105	20	10	10	CD
cord-002728-6oyw5sqv	105	21	8	8	CD
cord-002728-6oyw5sqv	105	22	VLPs	vlp	NNS
cord-002728-6oyw5sqv	105	23	/	/	SYM
cord-002728-6oyw5sqv	105	24	biopsy	biopsy	NN
cord-002728-6oyw5sqv	105	25	)	)	-RRB-
cord-002728-6oyw5sqv	105	26	,	,	,
cord-002728-6oyw5sqv	105	27	and	and	CC
cord-002728-6oyw5sqv	105	28	for	for	IN
cord-002728-6oyw5sqv	105	29	the	the	DT
cord-002728-6oyw5sqv	105	30	CD	CD	NNP
cord-002728-6oyw5sqv	105	31	patients	patient	NNS
cord-002728-6oyw5sqv	105	32	ulcerated	ulcerated	JJ
cord-002728-6oyw5sqv	105	33	mucosa	mucosa	RB
cord-002728-6oyw5sqv	105	34	had	have	VBD
cord-002728-6oyw5sqv	105	35	significantly	significantly	RB
cord-002728-6oyw5sqv	105	36	fewer	few	JJR
cord-002728-6oyw5sqv	105	37	VLPs	vlp	NNS
cord-002728-6oyw5sqv	105	38	than	than	IN
cord-002728-6oyw5sqv	105	39	nonulcerated	nonulcerated	JJ
cord-002728-6oyw5sqv	105	40	mucosa	mucosa	NN
cord-002728-6oyw5sqv	105	41	(	(	-LRB-
cord-002728-6oyw5sqv	105	42	2.1	2.1	CD
cord-002728-6oyw5sqv	105	43	9	9	CD
cord-002728-6oyw5sqv	105	44	10	10	CD
cord-002728-6oyw5sqv	105	45	9	9	CD
cord-002728-6oyw5sqv	105	46	vs	vs	IN
cord-002728-6oyw5sqv	105	47	4.1	4.1	CD
cord-002728-6oyw5sqv	105	48	9	9	CD
cord-002728-6oyw5sqv	105	49	10	10	CD
cord-002728-6oyw5sqv	105	50	9	9	CD
cord-002728-6oyw5sqv	105	51	VLPs	vlp	NNS
cord-002728-6oyw5sqv	105	52	/	/	SYM
cord-002728-6oyw5sqv	105	53	biopsy	biopsy	NN
cord-002728-6oyw5sqv	105	54	)	)	-RRB-
cord-002728-6oyw5sqv	105	55	.	.	.
cord-002728-6oyw5sqv	106	1	9	9	LS
cord-002728-6oyw5sqv	106	2	More	more	RBR
cord-002728-6oyw5sqv	106	3	recent	recent	JJ
cord-002728-6oyw5sqv	106	4	,	,	,
cord-002728-6oyw5sqv	106	5	small	small	JJ
cord-002728-6oyw5sqv	106	6	-	-	HYPH
cord-002728-6oyw5sqv	106	7	scale	scale	NN
cord-002728-6oyw5sqv	106	8	studies	study	NNS
cord-002728-6oyw5sqv	106	9	have	have	VBP
cord-002728-6oyw5sqv	106	10	been	be	VBN
cord-002728-6oyw5sqv	106	11	undertaken	undertake	VBN
cord-002728-6oyw5sqv	106	12	to	to	TO
cord-002728-6oyw5sqv	106	13	characterise	characterise	VB
cord-002728-6oyw5sqv	106	14	the	the	DT
cord-002728-6oyw5sqv	106	15	gut	gut	NN
cord-002728-6oyw5sqv	106	16	virome	virome	NN
cord-002728-6oyw5sqv	106	17	of	of	IN
cord-002728-6oyw5sqv	106	18	IBD	IBD	NNP
cord-002728-6oyw5sqv	106	19	.	.	.
cord-002728-6oyw5sqv	107	1	29,62	29,62	CD
cord-002728-6oyw5sqv	107	2	-	-	SYM
cord-002728-6oyw5sqv	107	3	64	64	CD
cord-002728-6oyw5sqv	108	1	A	a	DT
cord-002728-6oyw5sqv	108	2	pilot	pilot	NN
cord-002728-6oyw5sqv	108	3	metagenomic	metagenomic	JJ
cord-002728-6oyw5sqv	108	4	study	study	NN
cord-002728-6oyw5sqv	108	5	of	of	IN
cord-002728-6oyw5sqv	108	6	ileal	ileal	JJ
cord-002728-6oyw5sqv	108	7	and	and	CC
cord-002728-6oyw5sqv	108	8	colonic	colonic	JJ
cord-002728-6oyw5sqv	108	9	contents	content	NNS
cord-002728-6oyw5sqv	108	10	of	of	IN
cord-002728-6oyw5sqv	108	11	six	six	CD
cord-002728-6oyw5sqv	108	12	CD	cd	NN
cord-002728-6oyw5sqv	108	13	patients	patient	NNS
cord-002728-6oyw5sqv	108	14	and	and	CC
cord-002728-6oyw5sqv	108	15	ileal	ileal	JJ
cord-002728-6oyw5sqv	108	16	samples	sample	NNS
cord-002728-6oyw5sqv	108	17	from	from	IN
cord-002728-6oyw5sqv	108	18	six	six	CD
cord-002728-6oyw5sqv	108	19	non	non	JJ
cord-002728-6oyw5sqv	108	20	-	-	JJ
cord-002728-6oyw5sqv	108	21	IBD	ibd	JJ
cord-002728-6oyw5sqv	108	22	controls	control	NNS
cord-002728-6oyw5sqv	108	23	showed	show	VBD
cord-002728-6oyw5sqv	108	24	CD	CD	NNP
cord-002728-6oyw5sqv	108	25	DNA	dna	NN
cord-002728-6oyw5sqv	108	26	-	-	HYPH
cord-002728-6oyw5sqv	108	27	based	base	VBN
cord-002728-6oyw5sqv	108	28	viromes	virome	NNS
cord-002728-6oyw5sqv	108	29	had	have	VBD
cord-002728-6oyw5sqv	108	30	higher	high	JJR
cord-002728-6oyw5sqv	108	31	phage	phage	NN
cord-002728-6oyw5sqv	108	32	abundance	abundance	NN
cord-002728-6oyw5sqv	108	33	than	than	IN
cord-002728-6oyw5sqv	108	34	control	control	NN
cord-002728-6oyw5sqv	108	35	samples	sample	NNS
cord-002728-6oyw5sqv	108	36	.	.	.
cord-002728-6oyw5sqv	109	1	62	62	CD
cord-002728-6oyw5sqv	110	1	However	however	RB
cord-002728-6oyw5sqv	110	2	,	,	,
cord-002728-6oyw5sqv	110	3	the	the	DT
cord-002728-6oyw5sqv	110	4	ways	way	NNS
cord-002728-6oyw5sqv	110	5	in	in	IN
cord-002728-6oyw5sqv	110	6	which	which	WDT
cord-002728-6oyw5sqv	110	7	virome	virome	NNP
cord-002728-6oyw5sqv	110	8	data	datum	NNS
cord-002728-6oyw5sqv	110	9	from	from	IN
cord-002728-6oyw5sqv	110	10	healthy	healthy	JJ
cord-002728-6oyw5sqv	110	11	controls	control	NNS
cord-002728-6oyw5sqv	110	12	(	(	-LRB-
cord-002728-6oyw5sqv	110	13	n	n	NN
cord-002728-6oyw5sqv	110	14	=	=	SYM
cord-002728-6oyw5sqv	110	15	8)	8)	NN
cord-002728-6oyw5sqv	110	16	and	and	CC
cord-002728-6oyw5sqv	110	17	patients	patient	NNS
cord-002728-6oyw5sqv	110	18	with	with	IN
cord-002728-6oyw5sqv	110	19	ileocolic	ileocolic	JJ
cord-002728-6oyw5sqv	110	20	CD	CD	NNP
cord-002728-6oyw5sqv	110	21	(	(	-LRB-
cord-002728-6oyw5sqv	110	22	n	n	NN
cord-002728-6oyw5sqv	110	23	=	=	SYM
cord-002728-6oyw5sqv	110	24	11	11	CD
cord-002728-6oyw5sqv	110	25	)	)	-RRB-
cord-002728-6oyw5sqv	110	26	were	be	VBD
cord-002728-6oyw5sqv	110	27	analysed	analyse	VBN
cord-002728-6oyw5sqv	110	28	were	be	VBD
cord-002728-6oyw5sqv	110	29	found	find	VBN
cord-002728-6oyw5sqv	110	30	to	to	TO
cord-002728-6oyw5sqv	110	31	contribute	contribute	VB
cord-002728-6oyw5sqv	110	32	to	to	IN
cord-002728-6oyw5sqv	110	33	interpretation	interpretation	NN
cord-002728-6oyw5sqv	110	34	of	of	IN
cord-002728-6oyw5sqv	110	35	results	result	NNS
cord-002728-6oyw5sqv	110	36	.	.	.
cord-002728-6oyw5sqv	111	1	63	63	CD
cord-002728-6oyw5sqv	111	2	Prophages	Prophages	NNP
cord-002728-6oyw5sqv	111	3	represented	represent	VBD
cord-002728-6oyw5sqv	111	4	the	the	DT
cord-002728-6oyw5sqv	111	5	most	most	JJS
cord-002728-6oyw5sqv	111	6	hits	hit	NNS
cord-002728-6oyw5sqv	111	7	in	in	IN
cord-002728-6oyw5sqv	111	8	the	the	DT
cord-002728-6oyw5sqv	111	9	CD	cd	NN
cord-002728-6oyw5sqv	111	10	samples	sample	NNS
cord-002728-6oyw5sqv	111	11	when	when	WRB
cord-002728-6oyw5sqv	111	12	unassembled	unassembled	JJ
cord-002728-6oyw5sqv	111	13	reads	read	NNS
cord-002728-6oyw5sqv	111	14	were	be	VBD
cord-002728-6oyw5sqv	111	15	compared	compare	VBN
cord-002728-6oyw5sqv	111	16	,	,	,
cord-002728-6oyw5sqv	111	17	but	but	CC
cord-002728-6oyw5sqv	111	18	were	be	VBD
cord-002728-6oyw5sqv	111	19	higher	high	JJR
cord-002728-6oyw5sqv	111	20	in	in	IN
cord-002728-6oyw5sqv	111	21	the	the	DT
cord-002728-6oyw5sqv	111	22	control	control	NN
cord-002728-6oyw5sqv	111	23	group	group	NN
cord-002728-6oyw5sqv	111	24	when	when	WRB
cord-002728-6oyw5sqv	111	25	the	the	DT
cord-002728-6oyw5sqv	111	26	assembled	assemble	VBN
cord-002728-6oyw5sqv	111	27	data	datum	NNS
cord-002728-6oyw5sqv	111	28	were	be	VBD
cord-002728-6oyw5sqv	111	29	compared	compare	VBN
cord-002728-6oyw5sqv	111	30	.	.	.
cord-002728-6oyw5sqv	112	1	Analysis	analysis	NN
cord-002728-6oyw5sqv	112	2	based	base	VBN
cord-002728-6oyw5sqv	112	3	on	on	IN
cord-002728-6oyw5sqv	112	4	assembled	assemble	VBN
cord-002728-6oyw5sqv	112	5	data	datum	NNS
cord-002728-6oyw5sqv	112	6	showed	show	VBD
cord-002728-6oyw5sqv	112	7	fewer	few	JJR
cord-002728-6oyw5sqv	112	8	differences	difference	NNS
cord-002728-6oyw5sqv	112	9	between	between	IN
cord-002728-6oyw5sqv	112	10	the	the	DT
cord-002728-6oyw5sqv	112	11	CD	CD	NNP
cord-002728-6oyw5sqv	112	12	and	and	CC
cord-002728-6oyw5sqv	112	13	control	control	NN
cord-002728-6oyw5sqv	112	14	group	group	NN
cord-002728-6oyw5sqv	112	15	.	.	.
cord-002728-6oyw5sqv	113	1	Nonrarefied	nonrarefied	JJ
cord-002728-6oyw5sqv	113	2	data	datum	NNS
cord-002728-6oyw5sqv	113	3	were	be	VBD
cord-002728-6oyw5sqv	113	4	used	use	VBN
cord-002728-6oyw5sqv	113	5	to	to	TO
cord-002728-6oyw5sqv	113	6	generate	generate	VB
cord-002728-6oyw5sqv	113	7	estimators	estimator	NNS
cord-002728-6oyw5sqv	113	8	of	of	IN
cord-002728-6oyw5sqv	113	9	species	species	NN
cord-002728-6oyw5sqv	113	10	richness	richness	NN
cord-002728-6oyw5sqv	113	11	:	:	:
cord-002728-6oyw5sqv	113	12	the	the	DT
cord-002728-6oyw5sqv	113	13	viromes	virome	NNS
cord-002728-6oyw5sqv	113	14	of	of	IN
cord-002728-6oyw5sqv	113	15	CD	cd	NN
cord-002728-6oyw5sqv	113	16	patients	patient	NNS
cord-002728-6oyw5sqv	113	17	were	be	VBD
cord-002728-6oyw5sqv	113	18	less	less	RBR
cord-002728-6oyw5sqv	113	19	diverse	diverse	JJ
cord-002728-6oyw5sqv	113	20	than	than	IN
cord-002728-6oyw5sqv	113	21	the	the	DT
cord-002728-6oyw5sqv	113	22	healthy	healthy	JJ
cord-002728-6oyw5sqv	113	23	patients	patient	NNS
cord-002728-6oyw5sqv	113	24	,	,	,
cord-002728-6oyw5sqv	113	25	but	but	CC
cord-002728-6oyw5sqv	113	26	showed	show	VBD
cord-002728-6oyw5sqv	113	27	greater	great	JJR
cord-002728-6oyw5sqv	113	28	heterogeneity	heterogeneity	NN
cord-002728-6oyw5sqv	113	29	across	across	IN
cord-002728-6oyw5sqv	113	30	samples	sample	NNS
cord-002728-6oyw5sqv	113	31	.	.	.
cord-002728-6oyw5sqv	114	1	The	the	DT
cord-002728-6oyw5sqv	114	2	CD	cd	NN
cord-002728-6oyw5sqv	114	3	and	and	CC
cord-002728-6oyw5sqv	114	4	control	control	NN
cord-002728-6oyw5sqv	114	5	samples	sample	NNS
cord-002728-6oyw5sqv	114	6	could	could	MD
cord-002728-6oyw5sqv	114	7	not	not	RB
cord-002728-6oyw5sqv	114	8	be	be	VB
cord-002728-6oyw5sqv	114	9	fully	fully	RB
cord-002728-6oyw5sqv	114	10	separated	separate	VBN
cord-002728-6oyw5sqv	114	11	into	into	IN
cord-002728-6oyw5sqv	114	12	two	two	CD
cord-002728-6oyw5sqv	114	13	groups	group	NNS
cord-002728-6oyw5sqv	114	14	based	base	VBN
cord-002728-6oyw5sqv	114	15	on	on	IN
cord-002728-6oyw5sqv	114	16	VLP	VLP	NNP
cord-002728-6oyw5sqv	114	17	composition	composition	NN
cord-002728-6oyw5sqv	114	18	and	and	CC
cord-002728-6oyw5sqv	114	19	abundance	abundance	NN
cord-002728-6oyw5sqv	114	20	.	.	.
cord-002728-6oyw5sqv	115	1	A	a	DT
cord-002728-6oyw5sqv	115	2	later	later	JJ
cord-002728-6oyw5sqv	115	3	DNA	dna	NN
cord-002728-6oyw5sqv	115	4	-	-	HYPH
cord-002728-6oyw5sqv	115	5	based	base	VBN
cord-002728-6oyw5sqv	115	6	study	study	NN
cord-002728-6oyw5sqv	115	7	showed	show	VBD
cord-002728-6oyw5sqv	115	8	differences	difference	NNS
cord-002728-6oyw5sqv	115	9	in	in	IN
cord-002728-6oyw5sqv	115	10	CD	cd	NN
cord-002728-6oyw5sqv	115	11	patients	patient	NNS
cord-002728-6oyw5sqv	115	12	related	relate	VBN
cord-002728-6oyw5sqv	115	13	to	to	IN
cord-002728-6oyw5sqv	115	14	disease	disease	NN
cord-002728-6oyw5sqv	115	15	status	status	NN
cord-002728-6oyw5sqv	115	16	(	(	-LRB-
cord-002728-6oyw5sqv	115	17	newly	newly	RB
cord-002728-6oyw5sqv	115	18	diagnosed	diagnose	VBN
cord-002728-6oyw5sqv	115	19	,	,	,
cord-002728-6oyw5sqv	115	20	active	active	JJ
cord-002728-6oyw5sqv	115	21	onset	onset	NN
cord-002728-6oyw5sqv	115	22	,	,	,
cord-002728-6oyw5sqv	115	23	active	active	JJ
cord-002728-6oyw5sqv	115	24	presurgery	presurgery	NN
cord-002728-6oyw5sqv	115	25	)	)	-RRB-
cord-002728-6oyw5sqv	115	26	and	and	CC
cord-002728-6oyw5sqv	115	27	therapy	therapy	NN
cord-002728-6oyw5sqv	115	28	.	.	.
cord-002728-6oyw5sqv	116	1	65	65	CD
cord-002728-6oyw5sqv	117	1	Similar	similar	JJ
cord-002728-6oyw5sqv	117	2	to	to	IN
cord-002728-6oyw5sqv	117	3	their	-PRON-	PRP$
cord-002728-6oyw5sqv	117	4	previous	previous	JJ
cord-002728-6oyw5sqv	117	5	study	study	NN
cord-002728-6oyw5sqv	117	6	,	,	,
cord-002728-6oyw5sqv	117	7	individual	individual	JJ
cord-002728-6oyw5sqv	117	8	variability	variability	NN
cord-002728-6oyw5sqv	117	9	and	and	CC
cord-002728-6oyw5sqv	117	10	sample	sample	NN
cord-002728-6oyw5sqv	117	11	origin	origin	NN
cord-002728-6oyw5sqv	117	12	had	have	VBD
cord-002728-6oyw5sqv	117	13	a	a	DT
cord-002728-6oyw5sqv	117	14	greater	great	JJR
cord-002728-6oyw5sqv	117	15	effect	effect	NN
cord-002728-6oyw5sqv	117	16	on	on	IN
cord-002728-6oyw5sqv	117	17	the	the	DT
cord-002728-6oyw5sqv	117	18	virome	virome	NN
cord-002728-6oyw5sqv	117	19	than	than	IN
cord-002728-6oyw5sqv	117	20	CD	CD	NNP
cord-002728-6oyw5sqv	117	21	,	,	,
cord-002728-6oyw5sqv	117	22	although	although	IN
cord-002728-6oyw5sqv	117	23	more	more	JJR
cord-002728-6oyw5sqv	117	24	over	over	RB
cord-002728-6oyw5sqv	117	25	-	-	HYPH
cord-002728-6oyw5sqv	117	26	represented	represent	VBN
cord-002728-6oyw5sqv	117	27	viruses	virus	NNS
cord-002728-6oyw5sqv	117	28	were	be	VBD
cord-002728-6oyw5sqv	117	29	found	find	VBN
cord-002728-6oyw5sqv	117	30	in	in	IN
cord-002728-6oyw5sqv	117	31	the	the	DT
cord-002728-6oyw5sqv	117	32	CD	CD	NNP
cord-002728-6oyw5sqv	117	33	viromes	virome	NNS
cord-002728-6oyw5sqv	117	34	than	than	IN
cord-002728-6oyw5sqv	117	35	the	the	DT
cord-002728-6oyw5sqv	117	36	healthy	healthy	JJ
cord-002728-6oyw5sqv	117	37	,	,	,
cord-002728-6oyw5sqv	117	38	and	and	CC
cord-002728-6oyw5sqv	117	39	newly	newly	RB
cord-002728-6oyw5sqv	117	40	diagnosed	diagnose	VBN
cord-002728-6oyw5sqv	117	41	patients	patient	NNS
cord-002728-6oyw5sqv	117	42	had	have	VBD
cord-002728-6oyw5sqv	117	43	higher	high	JJR
cord-002728-6oyw5sqv	117	44	diversity	diversity	NN
cord-002728-6oyw5sqv	117	45	in	in	IN
cord-002728-6oyw5sqv	117	46	faecal	faecal	JJ
cord-002728-6oyw5sqv	117	47	and	and	CC
cord-002728-6oyw5sqv	117	48	biopsy	biopsy	JJ
cord-002728-6oyw5sqv	117	49	viromes	virome	NNS
cord-002728-6oyw5sqv	117	50	than	than	IN
cord-002728-6oyw5sqv	117	51	those	those	DT
cord-002728-6oyw5sqv	117	52	with	with	IN
cord-002728-6oyw5sqv	117	53	active	active	JJ
cord-002728-6oyw5sqv	117	54	disease	disease	NN
cord-002728-6oyw5sqv	117	55	.	.	.
cord-002728-6oyw5sqv	118	1	Patients	patient	NNS
cord-002728-6oyw5sqv	118	2	on	on	IN
cord-002728-6oyw5sqv	118	3	steroids	steroid	NNS
cord-002728-6oyw5sqv	118	4	and/or	and/or	CC
cord-002728-6oyw5sqv	118	5	immunosuppressors	immunosuppressor	NNS
cord-002728-6oyw5sqv	118	6	had	have	VBD
cord-002728-6oyw5sqv	118	7	lower	low	JJR
cord-002728-6oyw5sqv	118	8	diversity	diversity	NN
cord-002728-6oyw5sqv	118	9	than	than	IN
cord-002728-6oyw5sqv	118	10	untreated	untreated	JJ
cord-002728-6oyw5sqv	118	11	patients	patient	NNS
cord-002728-6oyw5sqv	118	12	,	,	,
cord-002728-6oyw5sqv	118	13	while	while	IN
cord-002728-6oyw5sqv	118	14	those	those	DT
cord-002728-6oyw5sqv	118	15	on	on	IN
cord-002728-6oyw5sqv	118	16	immunosuppressors	immunosuppressor	NNS
cord-002728-6oyw5sqv	118	17	only	only	RB
cord-002728-6oyw5sqv	118	18	had	have	VBD
cord-002728-6oyw5sqv	118	19	lower	low	JJR
cord-002728-6oyw5sqv	118	20	diversity	diversity	NN
cord-002728-6oyw5sqv	118	21	than	than	IN
cord-002728-6oyw5sqv	118	22	those	those	DT
cord-002728-6oyw5sqv	118	23	on	on	IN
cord-002728-6oyw5sqv	118	24	combination	combination	NN
cord-002728-6oyw5sqv	118	25	therapy	therapy	NN
cord-002728-6oyw5sqv	118	26	or	or	CC
cord-002728-6oyw5sqv	118	27	steroids	steroid	NNS
cord-002728-6oyw5sqv	118	28	only	only	RB
cord-002728-6oyw5sqv	118	29	.	.	.
cord-002728-6oyw5sqv	119	1	The	the	DT
cord-002728-6oyw5sqv	119	2	study	study	NN
cord-002728-6oyw5sqv	119	3	benefitted	benefit	VBD
cord-002728-6oyw5sqv	119	4	from	from	IN
cord-002728-6oyw5sqv	119	5	recruiting	recruit	VBG
cord-002728-6oyw5sqv	119	6	CD	cd	NN
cord-002728-6oyw5sqv	119	7	and	and	CC
cord-002728-6oyw5sqv	119	8	ulcerative	ulcerative	JJ
cord-002728-6oyw5sqv	119	9	colitis	colitis	NN
cord-002728-6oyw5sqv	119	10	(	(	-LRB-
cord-002728-6oyw5sqv	119	11	UC	UC	NNP
cord-002728-6oyw5sqv	119	12	)	)	-RRB-
cord-002728-6oyw5sqv	119	13	patients	patient	NNS
cord-002728-6oyw5sqv	119	14	and	and	CC
cord-002728-6oyw5sqv	119	15	their	-PRON-	PRP$
cord-002728-6oyw5sqv	119	16	family	family	NN
cord-002728-6oyw5sqv	119	17	members	member	NNS
cord-002728-6oyw5sqv	119	18	in	in	IN
cord-002728-6oyw5sqv	119	19	the	the	DT
cord-002728-6oyw5sqv	119	20	UK	UK	NNP
cord-002728-6oyw5sqv	119	21	(	(	-LRB-
cord-002728-6oyw5sqv	119	22	Cambridge	Cambridge	NNP
cord-002728-6oyw5sqv	119	23	)	)	-RRB-
cord-002728-6oyw5sqv	119	24	and	and	CC
cord-002728-6oyw5sqv	119	25	USA	USA	NNP
cord-002728-6oyw5sqv	119	26	(	(	-LRB-
cord-002728-6oyw5sqv	119	27	Los	Los	NNP
cord-002728-6oyw5sqv	119	28	Angeles	Angeles	NNP
cord-002728-6oyw5sqv	119	29	)	)	-RRB-
cord-002728-6oyw5sqv	119	30	,	,	,
cord-002728-6oyw5sqv	119	31	thereby	thereby	RB
cord-002728-6oyw5sqv	119	32	controlling	control	VBG
cord-002728-6oyw5sqv	119	33	for	for	IN
cord-002728-6oyw5sqv	119	34	household	household	NN
cord-002728-6oyw5sqv	119	35	factors	factor	NNS
cord-002728-6oyw5sqv	119	36	that	that	WDT
cord-002728-6oyw5sqv	119	37	may	may	MD
cord-002728-6oyw5sqv	119	38	influence	influence	VB
cord-002728-6oyw5sqv	119	39	the	the	DT
cord-002728-6oyw5sqv	119	40	microbiome	microbiome	NN
cord-002728-6oyw5sqv	119	41	.	.	.
cord-002728-6oyw5sqv	120	1	29	29	CD
cord-002728-6oyw5sqv	121	1	An	an	DT
cord-002728-6oyw5sqv	121	2	increase	increase	NN
cord-002728-6oyw5sqv	121	3	in	in	IN
cord-002728-6oyw5sqv	121	4	phage	phage	NN
cord-002728-6oyw5sqv	121	5	-	-	HYPH
cord-002728-6oyw5sqv	121	6	associated	associate	VBN
cord-002728-6oyw5sqv	121	7	richness	richness	NN
cord-002728-6oyw5sqv	121	8	(	(	-LRB-
cord-002728-6oyw5sqv	121	9	predominantly	predominantly	RB
cord-002728-6oyw5sqv	121	10	Caudovirales	Caudovirales	NNP
cord-002728-6oyw5sqv	121	11	and	and	CC
cord-002728-6oyw5sqv	121	12	Microviridae	Microviridae	NNP
cord-002728-6oyw5sqv	121	13	)	)	-RRB-
cord-002728-6oyw5sqv	121	14	was	be	VBD
cord-002728-6oyw5sqv	121	15	seen	see	VBN
cord-002728-6oyw5sqv	121	16	in	in	IN
cord-002728-6oyw5sqv	121	17	IBD	IBD	NNP
cord-002728-6oyw5sqv	121	18	faecal	faecal	JJ
cord-002728-6oyw5sqv	121	19	viromes	virome	NNS
cord-002728-6oyw5sqv	121	20	compared	compare	VBN
cord-002728-6oyw5sqv	121	21	with	with	IN
cord-002728-6oyw5sqv	121	22	those	those	DT
cord-002728-6oyw5sqv	121	23	of	of	IN
cord-002728-6oyw5sqv	121	24	controls	control	NNS
cord-002728-6oyw5sqv	121	25	.	.	.
cord-002728-6oyw5sqv	122	1	Initial	initial	JJ
cord-002728-6oyw5sqv	122	2	findings	finding	NNS
cord-002728-6oyw5sqv	122	3	were	be	VBD
cord-002728-6oyw5sqv	122	4	confirmed	confirm	VBN
cord-002728-6oyw5sqv	122	5	using	use	VBG
cord-002728-6oyw5sqv	122	6	two	two	CD
cord-002728-6oyw5sqv	122	7	independent	independent	JJ
cord-002728-6oyw5sqv	122	8	and	and	CC
cord-002728-6oyw5sqv	122	9	geographically	geographically	RB
cord-002728-6oyw5sqv	122	10	distinct	distinct	JJ
cord-002728-6oyw5sqv	122	11	US	US	NNP
cord-002728-6oyw5sqv	122	12	(	(	-LRB-
cord-002728-6oyw5sqv	122	13	Boston	Boston	NNP
cord-002728-6oyw5sqv	122	14	,	,	,
cord-002728-6oyw5sqv	122	15	Chicago	Chicago	NNP
cord-002728-6oyw5sqv	122	16	)	)	-RRB-
cord-002728-6oyw5sqv	122	17	patient	patient	JJ
cord-002728-6oyw5sqv	122	18	cohorts	cohort	NNS
cord-002728-6oyw5sqv	122	19	with	with	IN
cord-002728-6oyw5sqv	122	20	matched	matched	JJ
cord-002728-6oyw5sqv	122	21	controls	control	NNS
cord-002728-6oyw5sqv	122	22	.	.	.
cord-002728-6oyw5sqv	123	1	29	29	CD
cord-002728-6oyw5sqv	124	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	124	2	was	be	VBD
cord-002728-6oyw5sqv	124	3	suggested	suggest	VBN
cord-002728-6oyw5sqv	124	4	decreases	decrease	NNS
cord-002728-6oyw5sqv	124	5	in	in	IN
cord-002728-6oyw5sqv	124	6	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	124	7	richness	richness	NN
cord-002728-6oyw5sqv	124	8	concomitant	concomitant	JJ
cord-002728-6oyw5sqv	124	9	with	with	IN
cord-002728-6oyw5sqv	124	10	increases	increase	NNS
cord-002728-6oyw5sqv	124	11	in	in	IN
cord-002728-6oyw5sqv	124	12	phage	phage	NN
cord-002728-6oyw5sqv	124	13	richness	richness	NN
cord-002728-6oyw5sqv	124	14	may	may	MD
cord-002728-6oyw5sqv	124	15	be	be	VB
cord-002728-6oyw5sqv	124	16	due	due	JJ
cord-002728-6oyw5sqv	124	17	to	to	IN
cord-002728-6oyw5sqv	124	18	predator	predator	NN
cord-002728-6oyw5sqv	124	19	-	-	HYPH
cord-002728-6oyw5sqv	124	20	prey	prey	NN
cord-002728-6oyw5sqv	124	21	dynamics	dynamic	NNS
cord-002728-6oyw5sqv	124	22	,	,	,
cord-002728-6oyw5sqv	124	23	but	but	CC
cord-002728-6oyw5sqv	124	24	it	-PRON-	PRP
cord-002728-6oyw5sqv	124	25	was	be	VBD
cord-002728-6oyw5sqv	124	26	unclear	unclear	JJ
cord-002728-6oyw5sqv	124	27	how	how	WRB
cord-002728-6oyw5sqv	124	28	these	these	DT
cord-002728-6oyw5sqv	124	29	contribute	contribute	VBP
cord-002728-6oyw5sqv	124	30	to	to	IN
cord-002728-6oyw5sqv	124	31	the	the	DT
cord-002728-6oyw5sqv	124	32	pathogenesis	pathogenesis	NN
cord-002728-6oyw5sqv	124	33	of	of	IN
cord-002728-6oyw5sqv	124	34	IBD	IBD	NNP
cord-002728-6oyw5sqv	124	35	.	.	.
cord-002728-6oyw5sqv	125	1	Also	also	RB
cord-002728-6oyw5sqv	125	2	proposed	propose	VBN
cord-002728-6oyw5sqv	125	3	was	be	VBD
cord-002728-6oyw5sqv	125	4	the	the	DT
cord-002728-6oyw5sqv	125	5	virome	virome	NN
cord-002728-6oyw5sqv	125	6	as	as	IN
cord-002728-6oyw5sqv	125	7	a	a	DT
cord-002728-6oyw5sqv	125	8	target	target	NN
cord-002728-6oyw5sqv	125	9	for	for	IN
cord-002728-6oyw5sqv	125	10	therapeutic	therapeutic	JJ
cord-002728-6oyw5sqv	125	11	modulation	modulation	NN
cord-002728-6oyw5sqv	125	12	.	.	.
cord-002728-6oyw5sqv	126	1	29	29	CD
cord-002728-6oyw5sqv	126	2	 	 	_SP
cord-002728-6oyw5sqv	127	1	Few	few	JJ
cord-002728-6oyw5sqv	127	2	studies	study	NNS
cord-002728-6oyw5sqv	127	3	of	of	IN
cord-002728-6oyw5sqv	127	4	the	the	DT
cord-002728-6oyw5sqv	127	5	human	human	JJ
cord-002728-6oyw5sqv	127	6	virome	virome	NNP
cord-002728-6oyw5sqv	127	7	have	have	VBP
cord-002728-6oyw5sqv	127	8	considered	consider	VBN
cord-002728-6oyw5sqv	127	9	the	the	DT
cord-002728-6oyw5sqv	127	10	effects	effect	NNS
cord-002728-6oyw5sqv	127	11	of	of	IN
cord-002728-6oyw5sqv	127	12	contaminants	contaminant	NNS
cord-002728-6oyw5sqv	127	13	in	in	IN
cord-002728-6oyw5sqv	127	14	reagents	reagent	NNS
cord-002728-6oyw5sqv	127	15	and	and	CC
cord-002728-6oyw5sqv	127	16	nucleic	nucleic	JJ
cord-002728-6oyw5sqv	127	17	acid	acid	NN
cord-002728-6oyw5sqv	127	18	extraction	extraction	NN
cord-002728-6oyw5sqv	127	19	kits	kit	NNS
cord-002728-6oyw5sqv	127	20	on	on	IN
cord-002728-6oyw5sqv	127	21	viral	viral	JJ
cord-002728-6oyw5sqv	127	22	metagenomes	metagenome	NNS
cord-002728-6oyw5sqv	127	23	(	(	-LRB-
cord-002728-6oyw5sqv	127	24	Table	Table	NNP
cord-002728-6oyw5sqv	127	25	S1	S1	NNP
cord-002728-6oyw5sqv	127	26	)	)	-RRB-
cord-002728-6oyw5sqv	127	27	,	,	,
cord-002728-6oyw5sqv	127	28	though	though	IN
cord-002728-6oyw5sqv	127	29	these	these	DT
cord-002728-6oyw5sqv	127	30	are	be	VBP
cord-002728-6oyw5sqv	127	31	being	be	VBG
cord-002728-6oyw5sqv	127	32	increasingly	increasingly	RB
cord-002728-6oyw5sqv	127	33	recognised	recognise	VBN
cord-002728-6oyw5sqv	127	34	in	in	IN
cord-002728-6oyw5sqv	127	35	prokaryote	prokaryote	NN
cord-002728-6oyw5sqv	127	36	-	-	HYPH
cord-002728-6oyw5sqv	127	37	focused	focus	VBN
cord-002728-6oyw5sqv	127	38	studies	study	NNS
cord-002728-6oyw5sqv	127	39	.	.	.
cord-002728-6oyw5sqv	128	1	26	26	CD
cord-002728-6oyw5sqv	128	2	,	,	,
cord-002728-6oyw5sqv	128	3	69	69	CD
cord-002728-6oyw5sqv	128	4	,	,	,
cord-002728-6oyw5sqv	128	5	70	70	CD
cord-002728-6oyw5sqv	128	6	Nucleases	nuclease	NNS
cord-002728-6oyw5sqv	128	7	,	,	,
cord-002728-6oyw5sqv	128	8	proteases	protease	NNS
cord-002728-6oyw5sqv	128	9	and	and	CC
cord-002728-6oyw5sqv	128	10	polymerases	polymerase	NNS
cord-002728-6oyw5sqv	128	11	used	use	VBN
cord-002728-6oyw5sqv	128	12	in	in	IN
cord-002728-6oyw5sqv	128	13	studies	study	NNS
cord-002728-6oyw5sqv	128	14	are	be	VBP
cord-002728-6oyw5sqv	128	15	produced	produce	VBN
cord-002728-6oyw5sqv	128	16	in	in	IN
cord-002728-6oyw5sqv	128	17	protein	protein	NN
cord-002728-6oyw5sqv	128	18	expression	expression	NN
cord-002728-6oyw5sqv	128	19	systems	system	NNS
cord-002728-6oyw5sqv	128	20	,	,	,
cord-002728-6oyw5sqv	128	21	and	and	CC
cord-002728-6oyw5sqv	128	22	sequences	sequence	NNS
cord-002728-6oyw5sqv	128	23	associated	associate	VBN
cord-002728-6oyw5sqv	128	24	with	with	IN
cord-002728-6oyw5sqv	128	25	these	these	DT
cord-002728-6oyw5sqv	128	26	expression	expression	NN
cord-002728-6oyw5sqv	128	27	vectors	vector	NNS
cord-002728-6oyw5sqv	128	28	have	have	VBP
cord-002728-6oyw5sqv	128	29	been	be	VBN
cord-002728-6oyw5sqv	128	30	detected	detect	VBN
cord-002728-6oyw5sqv	128	31	in	in	IN
cord-002728-6oyw5sqv	128	32	virome	virome	NNP
cord-002728-6oyw5sqv	128	33	studies	study	NNS
cord-002728-6oyw5sqv	128	34	.	.	.
cord-002728-6oyw5sqv	129	1	70	70	CD
cord-002728-6oyw5sqv	129	2	Columns	column	NNS
cord-002728-6oyw5sqv	129	3	used	use	VBD
cord-002728-6oyw5sqv	129	4	to	to	TO
cord-002728-6oyw5sqv	129	5	purify	purify	VB
cord-002728-6oyw5sqv	129	6	DNA	DNA	NNP
cord-002728-6oyw5sqv	129	7	may	may	MD
cord-002728-6oyw5sqv	129	8	introduce	introduce	VB
cord-002728-6oyw5sqv	129	9	parvovirus	parvovirus	NN
cord-002728-6oyw5sqv	129	10	-	-	HYPH
cord-002728-6oyw5sqv	129	11	like	like	JJ
cord-002728-6oyw5sqv	129	12	,	,	,
cord-002728-6oyw5sqv	129	13	circoviruses	circoviruses	NNP
cord-002728-6oyw5sqv	129	14	/	/	SYM
cord-002728-6oyw5sqv	129	15	densoviruses	densoviruses	NNP
cord-002728-6oyw5sqv	129	16	and	and	CC
cord-002728-6oyw5sqv	129	17	iridoviruses	iridoviruses	NNP
cord-002728-6oyw5sqv	129	18	sequences	sequence	NNS
cord-002728-6oyw5sqv	129	19	into	into	IN
cord-002728-6oyw5sqv	129	20	samples	sample	NNS
cord-002728-6oyw5sqv	129	21	,	,	,
cord-002728-6oyw5sqv	129	22	and	and	CC
cord-002728-6oyw5sqv	129	23	it	-PRON-	PRP
cord-002728-6oyw5sqv	129	24	has	have	VBZ
cord-002728-6oyw5sqv	129	25	been	be	VBN
cord-002728-6oyw5sqv	129	26	suggested	suggest	VBN
cord-002728-6oyw5sqv	129	27	their	-PRON-	PRP$
cord-002728-6oyw5sqv	129	28	use	use	NN
cord-002728-6oyw5sqv	129	29	should	should	MD
cord-002728-6oyw5sqv	129	30	be	be	VB
cord-002728-6oyw5sqv	129	31	avoided	avoid	VBN
cord-002728-6oyw5sqv	129	32	in	in	IN
cord-002728-6oyw5sqv	129	33	virome	virome	NNP
cord-002728-6oyw5sqv	129	34	studies	study	NNS
cord-002728-6oyw5sqv	129	35	.	.	.
cord-002728-6oyw5sqv	130	1	26	26	CD
cord-002728-6oyw5sqv	130	2	,	,	,
cord-002728-6oyw5sqv	130	3	70	70	CD
cord-002728-6oyw5sqv	130	4	Efforts	effort	NNS
cord-002728-6oyw5sqv	130	5	should	should	MD
cord-002728-6oyw5sqv	130	6	be	be	VB
cord-002728-6oyw5sqv	130	7	made	make	VBN
cord-002728-6oyw5sqv	130	8	to	to	TO
cord-002728-6oyw5sqv	130	9	prevent	prevent	VB
cord-002728-6oyw5sqv	130	10	cross	cross	NN
cord-002728-6oyw5sqv	130	11	-	-	NN
cord-002728-6oyw5sqv	130	12	contamination	contamination	NN
cord-002728-6oyw5sqv	130	13	of	of	IN
cord-002728-6oyw5sqv	130	14	samples	sample	NNS
cord-002728-6oyw5sqv	130	15	when	when	WRB
cord-002728-6oyw5sqv	130	16	processing	processing	NN
cord-002728-6oyw5sqv	130	17	samples	sample	NNS
cord-002728-6oyw5sqv	130	18	for	for	IN
cord-002728-6oyw5sqv	130	19	nucleic	nucleic	JJ
cord-002728-6oyw5sqv	130	20	acid	acid	NN
cord-002728-6oyw5sqv	130	21	extraction	extraction	NN
cord-002728-6oyw5sqv	130	22	and	and	CC
cord-002728-6oyw5sqv	130	23	sequencing	sequencing	NN
cord-002728-6oyw5sqv	130	24	.	.	.
cord-002728-6oyw5sqv	131	1	26	26	CD
cord-002728-6oyw5sqv	131	2	,	,	,
cord-002728-6oyw5sqv	131	3	70	70	CD
cord-002728-6oyw5sqv	131	4	Low	low	JJ
cord-002728-6oyw5sqv	131	5	-	-	HYPH
cord-002728-6oyw5sqv	131	6	biomass	biomass	NN
cord-002728-6oyw5sqv	131	7	samples	sample	NNS
cord-002728-6oyw5sqv	131	8	obtained	obtain	VBN
cord-002728-6oyw5sqv	131	9	from	from	IN
cord-002728-6oyw5sqv	131	10	non	non	JJ
cord-002728-6oyw5sqv	131	11	-	-	JJ
cord-002728-6oyw5sqv	131	12	GI	gi	JJ
cord-002728-6oyw5sqv	131	13	sites	site	NNS
cord-002728-6oyw5sqv	131	14	will	will	MD
cord-002728-6oyw5sqv	131	15	be	be	VB
cord-002728-6oyw5sqv	131	16	reliant	reliant	JJ
cord-002728-6oyw5sqv	131	17	on	on	IN
cord-002728-6oyw5sqv	131	18	PCR	PCR	NNP
cord-002728-6oyw5sqv	131	19	-	-	HYPH
cord-002728-6oyw5sqv	131	20	based	base	VBN
cord-002728-6oyw5sqv	131	21	approaches	approach	NNS
cord-002728-6oyw5sqv	131	22	for	for	IN
cord-002728-6oyw5sqv	131	23	the	the	DT
cord-002728-6oyw5sqv	131	24	foreseeable	foreseeable	JJ
cord-002728-6oyw5sqv	131	25	future	future	NN
cord-002728-6oyw5sqv	131	26	,	,	,
cord-002728-6oyw5sqv	131	27	and	and	CC
cord-002728-6oyw5sqv	131	28	these	these	DT
cord-002728-6oyw5sqv	131	29	are	be	VBP
cord-002728-6oyw5sqv	131	30	most	most	RBS
cord-002728-6oyw5sqv	131	31	likely	likely	JJ
cord-002728-6oyw5sqv	131	32	to	to	TO
cord-002728-6oyw5sqv	131	33	be	be	VB
cord-002728-6oyw5sqv	131	34	affected	affect	VBN
cord-002728-6oyw5sqv	131	35	by	by	IN
cord-002728-6oyw5sqv	131	36	contaminants	contaminant	NNS
cord-002728-6oyw5sqv	131	37	in	in	IN
cord-002728-6oyw5sqv	131	38	reagents	reagent	NNS
cord-002728-6oyw5sqv	131	39	.	.	.
cord-002728-6oyw5sqv	132	1	Therefore	therefore	RB
cord-002728-6oyw5sqv	132	2	,	,	,
cord-002728-6oyw5sqv	132	3	appropriate	appropriate	JJ
cord-002728-6oyw5sqv	132	4	negative	negative	JJ
cord-002728-6oyw5sqv	132	5	controls	control	NNS
cord-002728-6oyw5sqv	132	6	should	should	MD
cord-002728-6oyw5sqv	132	7	be	be	VB
cord-002728-6oyw5sqv	132	8	included	include	VBN
cord-002728-6oyw5sqv	132	9	in	in	IN
cord-002728-6oyw5sqv	132	10	sequencing	sequencing	NN
cord-002728-6oyw5sqv	132	11	studies	study	NNS
cord-002728-6oyw5sqv	132	12	,	,	,
cord-002728-6oyw5sqv	132	13	to	to	TO
cord-002728-6oyw5sqv	132	14	allow	allow	VB
cord-002728-6oyw5sqv	132	15	the	the	DT
cord-002728-6oyw5sqv	132	16	identification	identification	NN
cord-002728-6oyw5sqv	132	17	of	of	IN
cord-002728-6oyw5sqv	132	18	sample	sample	NN
cord-002728-6oyw5sqv	132	19	-	-	HYPH
cord-002728-6oyw5sqv	132	20	associated	associate	VBN
cord-002728-6oyw5sqv	132	21	sequences	sequence	NNS
cord-002728-6oyw5sqv	132	22	rather	rather	RB
cord-002728-6oyw5sqv	132	23	than	than	IN
cord-002728-6oyw5sqv	132	24	those	those	DT
cord-002728-6oyw5sqv	132	25	from	from	IN
cord-002728-6oyw5sqv	132	26	contaminants	contaminant	NNS
cord-002728-6oyw5sqv	132	27	.	.	.
cord-002728-6oyw5sqv	133	1	Those	those	DT
cord-002728-6oyw5sqv	133	2	studies	study	NNS
cord-002728-6oyw5sqv	133	3	targeting	target	VBG
cord-002728-6oyw5sqv	133	4	only	only	RB
cord-002728-6oyw5sqv	133	5	the	the	DT
cord-002728-6oyw5sqv	133	6	VLPs	vlp	NNS
cord-002728-6oyw5sqv	133	7	of	of	IN
cord-002728-6oyw5sqv	133	8	the	the	DT
cord-002728-6oyw5sqv	133	9	microbiota	microbiota	NN
cord-002728-6oyw5sqv	133	10	will	will	MD
cord-002728-6oyw5sqv	133	11	not	not	RB
cord-002728-6oyw5sqv	133	12	capture	capture	VB
cord-002728-6oyw5sqv	133	13	prophage	prophage	NN
cord-002728-6oyw5sqv	133	14	diversity	diversity	NN
cord-002728-6oyw5sqv	133	15	within	within	IN
cord-002728-6oyw5sqv	133	16	samples	sample	NNS
cord-002728-6oyw5sqv	133	17	,	,	,
cord-002728-6oyw5sqv	133	18	and	and	CC
cord-002728-6oyw5sqv	133	19	will	will	MD
cord-002728-6oyw5sqv	133	20	contain	contain	VB
cord-002728-6oyw5sqv	133	21	little	little	JJ
cord-002728-6oyw5sqv	133	22	information	information	NN
cord-002728-6oyw5sqv	133	23	to	to	TO
cord-002728-6oyw5sqv	133	24	allow	allow	VB
cord-002728-6oyw5sqv	133	25	studies	study	NNS
cord-002728-6oyw5sqv	133	26	of	of	IN
cord-002728-6oyw5sqv	133	27	phage	phage	NN
cord-002728-6oyw5sqv	133	28	-	-	HYPH
cord-002728-6oyw5sqv	133	29	host	host	NN
cord-002728-6oyw5sqv	133	30	interactions	interaction	NNS
cord-002728-6oyw5sqv	133	31	or	or	CC
cord-002728-6oyw5sqv	133	32	host	host	NN
cord-002728-6oyw5sqv	133	33	ranges	range	NNS
cord-002728-6oyw5sqv	133	34	,	,	,
cord-002728-6oyw5sqv	133	35	limiting	limit	VBG
cord-002728-6oyw5sqv	133	36	in	in	IN
cord-002728-6oyw5sqv	133	37	-	-	HYPH
cord-002728-6oyw5sqv	133	38	depth	depth	NN
cord-002728-6oyw5sqv	133	39	analyses	analysis	NNS
cord-002728-6oyw5sqv	133	40	of	of	IN
cord-002728-6oyw5sqv	133	41	the	the	DT
cord-002728-6oyw5sqv	133	42	overall	overall	JJ
cord-002728-6oyw5sqv	133	43	ecology	ecology	NN
cord-002728-6oyw5sqv	133	44	of	of	IN
cord-002728-6oyw5sqv	133	45	the	the	DT
cord-002728-6oyw5sqv	133	46	gut	gut	NN
cord-002728-6oyw5sqv	133	47	microbiome	microbiome	NN
cord-002728-6oyw5sqv	133	48	.	.	.
cord-002728-6oyw5sqv	134	1	21	21	CD
cord-002728-6oyw5sqv	135	1	Studying	study	VBG
cord-002728-6oyw5sqv	135	2	total	total	JJ
cord-002728-6oyw5sqv	135	3	community	community	NN
cord-002728-6oyw5sqv	135	4	metagenomes	metagenome	VBZ
cord-002728-6oyw5sqv	135	5	in	in	IN
cord-002728-6oyw5sqv	135	6	conjunction	conjunction	NN
cord-002728-6oyw5sqv	135	7	with	with	IN
cord-002728-6oyw5sqv	135	8	VLP	VLP	NNP
cord-002728-6oyw5sqv	135	9	-	-	HYPH
cord-002728-6oyw5sqv	135	10	derived	derive	VBN
cord-002728-6oyw5sqv	135	11	metagenomes	metagenomes	NNP
cord-002728-6oyw5sqv	135	12	will	will	MD
cord-002728-6oyw5sqv	135	13	provide	provide	VB
cord-002728-6oyw5sqv	135	14	a	a	DT
cord-002728-6oyw5sqv	135	15	more	more	RBR
cord-002728-6oyw5sqv	135	16	-	-	HYPH
cord-002728-6oyw5sqv	135	17	complete	complete	JJ
cord-002728-6oyw5sqv	135	18	picture	picture	NN
cord-002728-6oyw5sqv	135	19	of	of	IN
cord-002728-6oyw5sqv	135	20	virus	virus	NN
cord-002728-6oyw5sqv	135	21	-	-	HYPH
cord-002728-6oyw5sqv	135	22	host	host	NN
cord-002728-6oyw5sqv	135	23	interactions	interaction	NNS
cord-002728-6oyw5sqv	135	24	in	in	IN
cord-002728-6oyw5sqv	135	25	the	the	DT
cord-002728-6oyw5sqv	135	26	human	human	JJ
cord-002728-6oyw5sqv	135	27	gut	gut	NN
cord-002728-6oyw5sqv	135	28	.	.	.
cord-002728-6oyw5sqv	136	1	21	21	CD
cord-002728-6oyw5sqv	137	1	The	the	DT
cord-002728-6oyw5sqv	137	2	greatest	great	JJS
cord-002728-6oyw5sqv	137	3	challenge	challenge	NN
cord-002728-6oyw5sqv	137	4	to	to	IN
cord-002728-6oyw5sqv	137	5	integrated	integrate	VBN
cord-002728-6oyw5sqv	137	6	studies	study	NNS
cord-002728-6oyw5sqv	137	7	of	of	IN
cord-002728-6oyw5sqv	137	8	the	the	DT
cord-002728-6oyw5sqv	137	9	whole	whole	JJ
cord-002728-6oyw5sqv	137	10	gut	gut	NN
cord-002728-6oyw5sqv	137	11	microbiome	microbiome	NN
cord-002728-6oyw5sqv	137	12	is	be	VBZ
cord-002728-6oyw5sqv	137	13	71	71	CD
cord-002728-6oyw5sqv	138	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	138	2	has	have	VBZ
cord-002728-6oyw5sqv	138	3	been	be	VBN
cord-002728-6oyw5sqv	138	4	stated	state	VBN
cord-002728-6oyw5sqv	138	5	that	that	IN
cord-002728-6oyw5sqv	138	6	isolating	isolate	VBG
cord-002728-6oyw5sqv	138	7	"	"	``
cord-002728-6oyw5sqv	138	8	just	just	RB
cord-002728-6oyw5sqv	138	9	a	a	DT
cord-002728-6oyw5sqv	138	10	few	few	JJ
cord-002728-6oyw5sqv	138	11	phage	phage	NN
cord-002728-6oyw5sqv	138	12	genomes	genome	NNS
cord-002728-6oyw5sqv	138	13	from	from	IN
cord-002728-6oyw5sqv	138	14	novel	novel	JJ
cord-002728-6oyw5sqv	138	15	environments	environment	NNS
cord-002728-6oyw5sqv	138	16	will	will	MD
cord-002728-6oyw5sqv	138	17	greatly	greatly	RB
cord-002728-6oyw5sqv	138	18	increase	increase	VB
cord-002728-6oyw5sqv	138	19	our	-PRON-	PRP$
cord-002728-6oyw5sqv	138	20	understanding	understanding	NN
cord-002728-6oyw5sqv	138	21	of	of	IN
cord-002728-6oyw5sqv	138	22	viral	viral	JJ
cord-002728-6oyw5sqv	138	23	diversity	diversity	NN
cord-002728-6oyw5sqv	138	24	in	in	IN
cord-002728-6oyw5sqv	138	25	these	these	DT
cord-002728-6oyw5sqv	138	26	environments	environment	NNS
cord-002728-6oyw5sqv	138	27	"	"	''
cord-002728-6oyw5sqv	138	28	.	.	.
cord-002728-6oyw5sqv	139	1	72	72	CD
cord-002728-6oyw5sqv	139	2	(	(	-LRB-
cord-002728-6oyw5sqv	139	3	2	2	LS
cord-002728-6oyw5sqv	139	4	)	)	-RRB-
cord-002728-6oyw5sqv	139	5	there	there	EX
cord-002728-6oyw5sqv	139	6	are	be	VBP
cord-002728-6oyw5sqv	139	7	a	a	DT
cord-002728-6oyw5sqv	139	8	number	number	NN
cord-002728-6oyw5sqv	139	9	of	of	IN
cord-002728-6oyw5sqv	139	10	medical	medical	JJ
cord-002728-6oyw5sqv	139	11	conditions	condition	NNS
cord-002728-6oyw5sqv	139	12	speculated	speculate	VBN
cord-002728-6oyw5sqv	139	13	to	to	TO
cord-002728-6oyw5sqv	139	14	be	be	VB
cord-002728-6oyw5sqv	139	15	linked	link	VBN
cord-002728-6oyw5sqv	139	16	with	with	IN
cord-002728-6oyw5sqv	139	17	viral	viral	JJ
cord-002728-6oyw5sqv	139	18	infections	infection	NNS
cord-002728-6oyw5sqv	139	19	(	(	-LRB-
cord-002728-6oyw5sqv	139	20	eg	eg	UH
cord-002728-6oyw5sqv	139	21	,	,	,
cord-002728-6oyw5sqv	139	22	type	type	NN
cord-002728-6oyw5sqv	139	23	I	-PRON-	PRP
cord-002728-6oyw5sqv	139	24	diabetes	diabete	VBZ
cord-002728-6oyw5sqv	139	25	,	,	,
cord-002728-6oyw5sqv	139	26	chronic	chronic	JJ
cord-002728-6oyw5sqv	139	27	fatigue	fatigue	NN
cord-002728-6oyw5sqv	139	28	syndrome	syndrome	NN
cord-002728-6oyw5sqv	139	29	,	,	,
cord-002728-6oyw5sqv	139	30	obesity	obesity	NN
cord-002728-6oyw5sqv	139	31	)	)	-RRB-
cord-002728-6oyw5sqv	139	32	but	but	CC
cord-002728-6oyw5sqv	139	33	for	for	IN
cord-002728-6oyw5sqv	139	34	which	which	WDT
cord-002728-6oyw5sqv	139	35	no	no	DT
cord-002728-6oyw5sqv	139	36	infectious	infectious	JJ
cord-002728-6oyw5sqv	139	37	agent	agent	NN
cord-002728-6oyw5sqv	139	38	has	have	VBZ
cord-002728-6oyw5sqv	139	39	been	be	VBN
cord-002728-6oyw5sqv	139	40	found	find	VBN
cord-002728-6oyw5sqv	139	41	.	.	.
cord-002728-6oyw5sqv	140	1	It	-PRON-	PRP
cord-002728-6oyw5sqv	140	2	has	have	VBZ
cord-002728-6oyw5sqv	140	3	been	be	VBN
cord-002728-6oyw5sqv	140	4	estimated	estimate	VBN
cord-002728-6oyw5sqv	140	5	over	over	IN
cord-002728-6oyw5sqv	140	6	half	half	DT
cord-002728-6oyw5sqv	140	7	of	of	IN
cord-002728-6oyw5sqv	140	8	humaninfecting	humaninfecte	VBG
cord-002728-6oyw5sqv	140	9	viruses	virus	NNS
cord-002728-6oyw5sqv	140	10	remain	remain	VBP
cord-002728-6oyw5sqv	140	11	to	to	TO
cord-002728-6oyw5sqv	140	12	be	be	VB
cord-002728-6oyw5sqv	140	13	discovered	discover	VBN
cord-002728-6oyw5sqv	140	14	.	.	.
cord-002728-6oyw5sqv	141	1	76	76	CD
cord-002728-6oyw5sqv	141	2	Interactions	interaction	NNS
cord-002728-6oyw5sqv	141	3	with	with	IN
cord-002728-6oyw5sqv	141	4	pets	pet	NNS
cord-002728-6oyw5sqv	141	5	,	,	,
cord-002728-6oyw5sqv	141	6	insects	insect	NNS
cord-002728-6oyw5sqv	141	7	and	and	CC
cord-002728-6oyw5sqv	141	8	wild	wild	JJ
cord-002728-6oyw5sqv	141	9	animals	animal	NNS
cord-002728-6oyw5sqv	141	10	will	will	MD
cord-002728-6oyw5sqv	141	11	also	also	RB
cord-002728-6oyw5sqv	141	12	influence	influence	VB
cord-002728-6oyw5sqv	141	13	the	the	DT
cord-002728-6oyw5sqv	141	14	composition	composition	NN
cord-002728-6oyw5sqv	141	15	of	of	IN
cord-002728-6oyw5sqv	141	16	the	the	DT
cord-002728-6oyw5sqv	141	17	human	human	JJ
cord-002728-6oyw5sqv	141	18	virome	virome	NN
cord-002728-6oyw5sqv	141	19	.	.	.
cord-002728-6oyw5sqv	142	1	From	from	IN
cord-002728-6oyw5sqv	142	2	a	a	DT
cord-002728-6oyw5sqv	142	3	pathogen	pathogen	NN
cord-002728-6oyw5sqv	142	4	perspective	perspective	NN
cord-002728-6oyw5sqv	142	5	,	,	,
cord-002728-6oyw5sqv	142	6	bush	bush	NNP
cord-002728-6oyw5sqv	142	7	-	-	HYPH
cord-002728-6oyw5sqv	142	8	workers	worker	NNS
cord-002728-6oyw5sqv	142	9	,	,	,
cord-002728-6oyw5sqv	142	10	abattoir	abattoir	NN
cord-002728-6oyw5sqv	142	11	workers	worker	NNS
cord-002728-6oyw5sqv	142	12	and	and	CC
cord-002728-6oyw5sqv	142	13	individuals	individual	NNS
cord-002728-6oyw5sqv	142	14	exposed	expose	VBN
cord-002728-6oyw5sqv	142	15	to	to	IN
cord-002728-6oyw5sqv	142	16	insect	insect	NN
cord-002728-6oyw5sqv	142	17	bites	bite	NNS
cord-002728-6oyw5sqv	142	18	have	have	VBP
cord-002728-6oyw5sqv	142	19	been	be	VBN
cord-002728-6oyw5sqv	142	20	highlighted	highlight	VBN
cord-002728-6oyw5sqv	142	21	as	as	IN
cord-002728-6oyw5sqv	142	22	likely	likely	JJ
cord-002728-6oyw5sqv	142	23	sources	source	NNS
cord-002728-6oyw5sqv	142	24	of	of	IN
cord-002728-6oyw5sqv	142	25	new	new	JJ
cord-002728-6oyw5sqv	142	26	humaninfecting	humaninfecting	NN
cord-002728-6oyw5sqv	142	27	viruses	virus	NNS
cord-002728-6oyw5sqv	142	28	.	.	.
cord-002728-6oyw5sqv	143	1	75	75	CD
cord-002728-6oyw5sqv	144	1	With	with	IN
cord-002728-6oyw5sqv	144	2	the	the	DT
cord-002728-6oyw5sqv	144	3	advent	advent	NN
cord-002728-6oyw5sqv	144	4	of	of	IN
cord-002728-6oyw5sqv	144	5	high	high	JJ
cord-002728-6oyw5sqv	144	6	-	-	HYPH
cord-002728-6oyw5sqv	144	7	throughput	throughput	NN
cord-002728-6oyw5sqv	144	8	,	,	,
cord-002728-6oyw5sqv	144	9	inexpensive	inexpensive	JJ
cord-002728-6oyw5sqv	144	10	,	,	,
cord-002728-6oyw5sqv	144	11	sensitive	sensitive	JJ
cord-002728-6oyw5sqv	144	12	sequencing	sequencing	NN
cord-002728-6oyw5sqv	144	13	methods	method	NNS
cord-002728-6oyw5sqv	144	14	,	,	,
cord-002728-6oyw5sqv	144	15	it	-PRON-	PRP
cord-002728-6oyw5sqv	144	16	has	have	VBZ
cord-002728-6oyw5sqv	144	17	become	become	VBN
cord-002728-6oyw5sqv	144	18	possible	possible	JJ
cord-002728-6oyw5sqv	144	19	to	to	TO
cord-002728-6oyw5sqv	144	20	study	study	VB
cord-002728-6oyw5sqv	144	21	the	the	DT
cord-002728-6oyw5sqv	144	22	contribution	contribution	NN
cord-002728-6oyw5sqv	144	23	of	of	IN
cord-002728-6oyw5sqv	144	24	dsDNA	dsdna	NN
cord-002728-6oyw5sqv	144	25	,	,	,
cord-002728-6oyw5sqv	144	26	ssDNA	ssdna	JJ
cord-002728-6oyw5sqv	144	27	and	and	CC
cord-002728-6oyw5sqv	144	28	RNA	RNA	NNP
cord-002728-6oyw5sqv	144	29	VLPs	vlp	NNS
cord-002728-6oyw5sqv	144	30	to	to	IN
cord-002728-6oyw5sqv	144	31	the	the	DT
cord-002728-6oyw5sqv	144	32	human	human	JJ
cord-002728-6oyw5sqv	144	33	virome	virome	NN
cord-002728-6oyw5sqv	144	34	.	.	.
cord-002728-6oyw5sqv	145	1	Gene	gene	NN
cord-002728-6oyw5sqv	145	2	transfer	transfer	NN
cord-002728-6oyw5sqv	145	3	agents	agent	NNS
cord-002728-6oyw5sqv	145	4	,	,	,
cord-002728-6oyw5sqv	145	5	which	which	WDT
cord-002728-6oyw5sqv	145	6	appear	appear	VBP
cord-002728-6oyw5sqv	145	7	to	to	TO
cord-002728-6oyw5sqv	145	8	represent	represent	VB
cord-002728-6oyw5sqv	145	9	defective	defective	JJ
cord-002728-6oyw5sqv	145	10	phages	phage	NNS
cord-002728-6oyw5sqv	145	11	,	,	,
cord-002728-6oyw5sqv	145	12	have	have	VBP
cord-002728-6oyw5sqv	145	13	not	not	RB
cord-002728-6oyw5sqv	145	14	been	be	VBN
cord-002728-6oyw5sqv	145	15	examined	examine	VBN
cord-002728-6oyw5sqv	145	16	in	in	IN
cord-002728-6oyw5sqv	145	17	the	the	DT
cord-002728-6oyw5sqv	145	18	context	context	NN
cord-002728-6oyw5sqv	145	19	of	of	IN
cord-002728-6oyw5sqv	145	20	the	the	DT
cord-002728-6oyw5sqv	145	21	human	human	JJ
cord-002728-6oyw5sqv	145	22	microbiome	microbiome	NN
cord-002728-6oyw5sqv	145	23	or	or	CC
cord-002728-6oyw5sqv	145	24	virome	virome	NN
cord-002728-6oyw5sqv	145	25	,	,	,
cord-002728-6oyw5sqv	145	26	but	but	CC
cord-002728-6oyw5sqv	145	27	may	may	MD
cord-002728-6oyw5sqv	145	28	also	also	RB
cord-002728-6oyw5sqv	145	29	make	make	VB
cord-002728-6oyw5sqv	145	30	a	a	DT
cord-002728-6oyw5sqv	145	31	contribution	contribution	NN
cord-002728-6oyw5sqv	145	32	to	to	IN
cord-002728-6oyw5sqv	145	33	its	-PRON-	PRP$
cord-002728-6oyw5sqv	145	34	genetic	genetic	JJ
cord-002728-6oyw5sqv	145	35	content	content	NN
cord-002728-6oyw5sqv	145	36	.	.	.
cord-002728-6oyw5sqv	146	1	77	77	CD
cord-002728-6oyw5sqv	146	2	,	,	,
cord-002728-6oyw5sqv	146	3	78	78	CD
cord-002728-6oyw5sqv	147	1	Similarly	similarly	RB
cord-002728-6oyw5sqv	147	2	,	,	,
cord-002728-6oyw5sqv	147	3	exosomes	exosome	VBN
cord-002728-6oyw5sqv	147	4	-	-	HYPH
cord-002728-6oyw5sqv	147	5	extracellular	extracellular	JJ
cord-002728-6oyw5sqv	147	6	vesicles	vesicle	NNS
cord-002728-6oyw5sqv	147	7	of	of	IN
cord-002728-6oyw5sqv	147	8	40	40	CD
cord-002728-6oyw5sqv	147	9	-	-	SYM
cord-002728-6oyw5sqv	147	10	100	100	CD
cord-002728-6oyw5sqv	147	11	nm	nm	NN
cord-002728-6oyw5sqv	147	12	in	in	IN
cord-002728-6oyw5sqv	147	13	diameter	diameter	NN
cord-002728-6oyw5sqv	147	14	consisting	consist	VBG
cord-002728-6oyw5sqv	147	15	of	of	IN
cord-002728-6oyw5sqv	147	16	proteins	protein	NNS
cord-002728-6oyw5sqv	147	17	,	,	,
cord-002728-6oyw5sqv	147	18	lipids	lipid	NNS
cord-002728-6oyw5sqv	147	19	,	,	,
cord-002728-6oyw5sqv	147	20	miRNA	miRNA	NNP
cord-002728-6oyw5sqv	147	21	,	,	,
cord-002728-6oyw5sqv	147	22	mRNA	mRNA	NNP
cord-002728-6oyw5sqv	147	23	and	and	CC
cord-002728-6oyw5sqv	147	24	DNA	dna	NN
cord-002728-6oyw5sqv	147	25	-	-	HYPH
cord-002728-6oyw5sqv	147	26	derived	derive	VBN
cord-002728-6oyw5sqv	147	27	from	from	IN
cord-002728-6oyw5sqv	147	28	cells	cell	NNS
cord-002728-6oyw5sqv	147	29	lining	line	VBG
cord-002728-6oyw5sqv	147	30	the	the	DT
cord-002728-6oyw5sqv	147	31	GI	GI	NNP
cord-002728-6oyw5sqv	147	32	epithelium	epithelium	NN
cord-002728-6oyw5sqv	147	33	are	be	VBP
cord-002728-6oyw5sqv	147	34	likely	likely	JJ
cord-002728-6oyw5sqv	147	35	to	to	TO
cord-002728-6oyw5sqv	147	36	contribute	contribute	VB
cord-002728-6oyw5sqv	147	37	to	to	IN
cord-002728-6oyw5sqv	147	38	nucleic	nucleic	JJ
cord-002728-6oyw5sqv	147	39	acids	acid	NNS
cord-002728-6oyw5sqv	147	40	found	find	VBN
cord-002728-6oyw5sqv	147	41	in	in	IN
cord-002728-6oyw5sqv	147	42	viromes	virome	NNS
cord-002728-6oyw5sqv	147	43	.	.	.
cord-002728-6oyw5sqv	148	1	79	79	CD
cord-002728-6oyw5sqv	148	2	,	,	,
cord-002728-6oyw5sqv	148	3	80	80	CD
cord-002728-6oyw5sqv	148	4	Outer	outer	JJ
cord-002728-6oyw5sqv	148	5	-	-	HYPH
cord-002728-6oyw5sqv	148	6	membrane	membrane	NN
cord-002728-6oyw5sqv	148	7	vesicles	vesicle	NNS
cord-002728-6oyw5sqv	148	8	,	,	,
cord-002728-6oyw5sqv	148	9	the	the	DT
cord-002728-6oyw5sqv	148	10	equivalent	equivalent	NN
cord-002728-6oyw5sqv	148	11	(	(	-LRB-
cord-002728-6oyw5sqv	148	12	in	in	IN
cord-002728-6oyw5sqv	148	13	size	size	NN
cord-002728-6oyw5sqv	148	14	and	and	CC
cord-002728-6oyw5sqv	148	15	composition	composition	NN
cord-002728-6oyw5sqv	148	16	)	)	-RRB-
cord-002728-6oyw5sqv	148	17	of	of	IN
cord-002728-6oyw5sqv	148	18	eukaryotic	eukaryotic	JJ
cord-002728-6oyw5sqv	148	19	exosomes	exosome	NNS
cord-002728-6oyw5sqv	148	20	for	for	IN
cord-002728-6oyw5sqv	148	21	Gram	gram	NN
cord-002728-6oyw5sqv	148	22	-	-	HYPH
cord-002728-6oyw5sqv	148	23	negative	negative	JJ
cord-002728-6oyw5sqv	148	24	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	148	25	,	,	,
cord-002728-6oyw5sqv	148	26	may	may	MD
cord-002728-6oyw5sqv	148	27	also	also	RB
cord-002728-6oyw5sqv	148	28	contribute	contribute	VB
cord-002728-6oyw5sqv	148	29	to	to	IN
cord-002728-6oyw5sqv	148	30	what	what	WP
cord-002728-6oyw5sqv	148	31	we	-PRON-	PRP
cord-002728-6oyw5sqv	148	32	currently	currently	RB
cord-002728-6oyw5sqv	148	33	call	call	VBP
cord-002728-6oyw5sqv	148	34	the	the	DT
cord-002728-6oyw5sqv	148	35	virome	virome	NN
cord-002728-6oyw5sqv	148	36	,	,	,
cord-002728-6oyw5sqv	148	37	as	as	IN
cord-002728-6oyw5sqv	148	38	these	these	DT
cord-002728-6oyw5sqv	148	39	vesicles	vesicle	NNS
cord-002728-6oyw5sqv	148	40	have	have	VBP
cord-002728-6oyw5sqv	148	41	recently	recently	RB
cord-002728-6oyw5sqv	148	42	been	be	VBN
cord-002728-6oyw5sqv	148	43	reported	report	VBN
cord-002728-6oyw5sqv	148	44	to	to	TO
cord-002728-6oyw5sqv	148	45	contain	contain	VB
cord-002728-6oyw5sqv	148	46	DNA	DNA	NNP
cord-002728-6oyw5sqv	148	47	as	as	RB
cord-002728-6oyw5sqv	148	48	well	well	RB
cord-002728-6oyw5sqv	148	49	as	as	IN
cord-002728-6oyw5sqv	148	50	RNA	RNA	NNP
cord-002728-6oyw5sqv	148	51	.	.	.
cord-002728-6oyw5sqv	149	1	81	81	CD
cord-002728-6oyw5sqv	149	2	 	 	_SP
cord-002728-6oyw5sqv	150	1	Whereas	whereas	IN
cord-002728-6oyw5sqv	150	2	16S	16S	NNP
cord-002728-6oyw5sqv	150	3	rRNA	rrna	NN
cord-002728-6oyw5sqv	150	4	gene	gene	NN
cord-002728-6oyw5sqv	150	5	sequence	sequence	NN
cord-002728-6oyw5sqv	150	6	data	datum	NNS
cord-002728-6oyw5sqv	150	7	are	be	VBP
cord-002728-6oyw5sqv	150	8	readily	readily	RB
cord-002728-6oyw5sqv	150	9	processed	process	VBN
cord-002728-6oyw5sqv	150	10	and	and	CC
cord-002728-6oyw5sqv	150	11	analysed	analyse	VBN
cord-002728-6oyw5sqv	150	12	using	use	VBG
cord-002728-6oyw5sqv	150	13	packages	package	NNS
cord-002728-6oyw5sqv	150	14	such	such	JJ
cord-002728-6oyw5sqv	150	15	as	as	IN
cord-002728-6oyw5sqv	150	16	QIIME	QIIME	NNP
cord-002728-6oyw5sqv	150	17	and	and	CC
cord-002728-6oyw5sqv	150	18	Mothur	Mothur	NNP
cord-002728-6oyw5sqv	150	19	,	,	,
cord-002728-6oyw5sqv	150	20	no	no	DT
cord-002728-6oyw5sqv	150	21	such	such	JJ
cord-002728-6oyw5sqv	150	22	tools	tool	NNS
cord-002728-6oyw5sqv	150	23	exist	exist	VBP
cord-002728-6oyw5sqv	150	24	for	for	IN
cord-002728-6oyw5sqv	150	25	the	the	DT
cord-002728-6oyw5sqv	150	26	analyses	analysis	NNS
cord-002728-6oyw5sqv	150	27	of	of	IN
cord-002728-6oyw5sqv	150	28	sequence	sequence	NN
cord-002728-6oyw5sqv	150	29	data	datum	NNS
cord-002728-6oyw5sqv	150	30	derived	derive	VBN
cord-002728-6oyw5sqv	150	31	from	from	IN
cord-002728-6oyw5sqv	150	32	host	host	NN
cord-002728-6oyw5sqv	150	33	-	-	HYPH
cord-002728-6oyw5sqv	150	34	associated	associate	VBN
cord-002728-6oyw5sqv	150	35	viromes	virome	NNS
cord-002728-6oyw5sqv	150	36	.	.	.
cord-002728-6oyw5sqv	151	1	35	35	CD
cord-002728-6oyw5sqv	151	2	Tools	tool	NNS
cord-002728-6oyw5sqv	151	3	exist	exist	VBP
cord-002728-6oyw5sqv	151	4	for	for	IN
cord-002728-6oyw5sqv	151	5	functional	functional	JJ
cord-002728-6oyw5sqv	151	6	annotation	annotation	NN
cord-002728-6oyw5sqv	151	7	of	of	IN
cord-002728-6oyw5sqv	151	8	viromes	virome	NNS
cord-002728-6oyw5sqv	151	9	and	and	CC
cord-002728-6oyw5sqv	151	10	estimating	estimate	VBG
cord-002728-6oyw5sqv	151	11	viral	viral	JJ
cord-002728-6oyw5sqv	151	12	diversity	diversity	NN
cord-002728-6oyw5sqv	151	13	(	(	-LRB-
cord-002728-6oyw5sqv	151	14	Table	Table	NNP
cord-002728-6oyw5sqv	151	15	3	3	CD
cord-002728-6oyw5sqv	151	16	)	)	-RRB-
cord-002728-6oyw5sqv	151	17	.	.	.
cord-002728-6oyw5sqv	152	1	No	no	DT
cord-002728-6oyw5sqv	152	2	easy	easy	JJ
cord-002728-6oyw5sqv	152	3	-	-	HYPH
cord-002728-6oyw5sqv	152	4	to	to	IN
cord-002728-6oyw5sqv	152	5	-	-	HYPH
cord-002728-6oyw5sqv	152	6	use	use	NN
cord-002728-6oyw5sqv	152	7	pipeline	pipeline	NN
cord-002728-6oyw5sqv	152	8	that	that	WDT
cord-002728-6oyw5sqv	152	9	takes	take	VBZ
cord-002728-6oyw5sqv	152	10	raw	raw	JJ
cord-002728-6oyw5sqv	152	11	reads	read	NNS
cord-002728-6oyw5sqv	152	12	,	,	,
cord-002728-6oyw5sqv	152	13	strips	strip	VBZ
cord-002728-6oyw5sqv	152	14	out	out	RP
cord-002728-6oyw5sqv	152	15	host	host	NN
cord-002728-6oyw5sqv	152	16	DNA	dna	NN
cord-002728-6oyw5sqv	152	17	,	,	,
cord-002728-6oyw5sqv	152	18	looks	look	VBZ
cord-002728-6oyw5sqv	152	19	for	for	IN
cord-002728-6oyw5sqv	152	20	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	152	21	contaminants	contaminant	NNS
cord-002728-6oyw5sqv	152	22	then	then	RB
cord-002728-6oyw5sqv	152	23	assigns	assign	VBZ
cord-002728-6oyw5sqv	152	24	taxonomy	taxonomy	NN
cord-002728-6oyw5sqv	152	25	and	and	CC
cord-002728-6oyw5sqv	152	26	functionality	functionality	NN
cord-002728-6oyw5sqv	152	27	to	to	IN
cord-002728-6oyw5sqv	152	28	prokaryote	prokaryote	NN
cord-002728-6oyw5sqv	152	29	and	and	CC
cord-002728-6oyw5sqv	152	30	eukaryote	eukaryote	NN
cord-002728-6oyw5sqv	152	31	viruses	virus	NNS
cord-002728-6oyw5sqv	152	32	within	within	IN
cord-002728-6oyw5sqv	152	33	samples	sample	NNS
cord-002728-6oyw5sqv	153	1	exists	exist	VBZ
cord-002728-6oyw5sqv	153	2	,	,	,
cord-002728-6oyw5sqv	153	3	though	though	IN
cord-002728-6oyw5sqv	153	4	efforts	effort	NNS
cord-002728-6oyw5sqv	153	5	are	be	VBP
cord-002728-6oyw5sqv	153	6	being	be	VBG
cord-002728-6oyw5sqv	153	7	made	make	VBN
cord-002728-6oyw5sqv	153	8	to	to	TO
cord-002728-6oyw5sqv	153	9	generate	generate	VB
cord-002728-6oyw5sqv	153	10	such	such	JJ
cord-002728-6oyw5sqv	153	11	tools	tool	NNS
cord-002728-6oyw5sqv	153	12	.	.	.
cord-002728-6oyw5sqv	154	1	These	these	DT
cord-002728-6oyw5sqv	154	2	will	will	MD
cord-002728-6oyw5sqv	154	3	need	need	VB
cord-002728-6oyw5sqv	154	4	to	to	TO
cord-002728-6oyw5sqv	154	5	take	take	VB
cord-002728-6oyw5sqv	154	6	into	into	IN
cord-002728-6oyw5sqv	154	7	account	account	NN
cord-002728-6oyw5sqv	154	8	the	the	DT
cord-002728-6oyw5sqv	154	9	presence	presence	NN
cord-002728-6oyw5sqv	154	10	of	of	IN
cord-002728-6oyw5sqv	154	11	human	human	JJ
cord-002728-6oyw5sqv	154	12	endogenous	endogenous	JJ
cord-002728-6oyw5sqv	154	13	retroviruses	retrovirus	NNS
cord-002728-6oyw5sqv	154	14	,	,	,
cord-002728-6oyw5sqv	154	15	which	which	WDT
cord-002728-6oyw5sqv	154	16	comprise~8	comprise~8	VBZ
cord-002728-6oyw5sqv	154	17	%	%	NN
cord-002728-6oyw5sqv	154	18	of	of	IN
cord-002728-6oyw5sqv	154	19	the	the	DT
cord-002728-6oyw5sqv	154	20	human	human	JJ
cord-002728-6oyw5sqv	154	21	genome	genome	NN
cord-002728-6oyw5sqv	154	22	and	and	CC
cord-002728-6oyw5sqv	154	23	still	still	RB
cord-002728-6oyw5sqv	154	24	possess	possess	VB
cord-002728-6oyw5sqv	154	25	the	the	DT
cord-002728-6oyw5sqv	154	26	ability	ability	NN
cord-002728-6oyw5sqv	154	27	to	to	TO
cord-002728-6oyw5sqv	154	28	encode	encode	VB
cord-002728-6oyw5sqv	154	29	retrovirus	retrovirus	NN
cord-002728-6oyw5sqv	154	30	polymerase	polymerase	NN
cord-002728-6oyw5sqv	154	31	and	and	CC
cord-002728-6oyw5sqv	154	32	envelope	envelope	NN
cord-002728-6oyw5sqv	154	33	protein	protein	NN
cord-002728-6oyw5sqv	154	34	and	and	CC
cord-002728-6oyw5sqv	154	35	can	can	MD
cord-002728-6oyw5sqv	154	36	be	be	VB
cord-002728-6oyw5sqv	154	37	reactivated	reactivate	VBN
cord-002728-6oyw5sqv	154	38	by	by	IN
cord-002728-6oyw5sqv	154	39	exogenous	exogenous	JJ
cord-002728-6oyw5sqv	154	40	retroviruses	retrovirus	NNS
cord-002728-6oyw5sqv	154	41	such	such	JJ
cord-002728-6oyw5sqv	154	42	as	as	IN
cord-002728-6oyw5sqv	154	43	HIV	HIV	NNP
cord-002728-6oyw5sqv	154	44	.	.	.
cord-002728-6oyw5sqv	155	1	53	53	CD
cord-002728-6oyw5sqv	155	2	 	 	_SP
cord-002728-6oyw5sqv	156	1	The	the	DT
cord-002728-6oyw5sqv	156	2	authors	author	NNS
cord-002728-6oyw5sqv	156	3	would	would	MD
cord-002728-6oyw5sqv	156	4	like	like	VB
cord-002728-6oyw5sqv	156	5	to	to	TO
cord-002728-6oyw5sqv	156	6	thank	thank	VB
cord-002728-6oyw5sqv	156	7	Sam	Sam	NNP
cord-002728-6oyw5sqv	156	8	Carding	Carding	NNP
cord-002728-6oyw5sqv	156	9	for	for	IN
cord-002728-6oyw5sqv	156	10	creating	create	VBG
cord-002728-6oyw5sqv	156	11	Figure	figure	NN
cord-002728-6oyw5sqv	156	12	1	1	CD
cord-002728-6oyw5sqv	156	13	.	.	.
cord-002728-6oyw5sqv	157	1	Declaration	declaration	NN
cord-002728-6oyw5sqv	157	2	of	of	IN
cord-002728-6oyw5sqv	157	3	personal	personal	JJ
cord-002728-6oyw5sqv	157	4	interest	interest	NN
cord-002728-6oyw5sqv	157	5	:	:	:
cord-002728-6oyw5sqv	157	6	None	none	NN
cord-002728-6oyw5sqv	157	7	.	.	.
cord-002728-6oyw5sqv	157	8	 	 	_SP
cord-002728-6oyw5sqv	158	1	Here	here	RB
cord-002728-6oyw5sqv	158	2	a	a	DT
cord-002728-6oyw5sqv	158	3	virus	virus	NN
cord-002728-6oyw5sqv	158	4	,	,	,
cord-002728-6oyw5sqv	158	5	there	there	EX
cord-002728-6oyw5sqv	158	6	a	a	DT
cord-002728-6oyw5sqv	158	7	virus	virus	NN
cord-002728-6oyw5sqv	158	8	,	,	,
cord-002728-6oyw5sqv	158	9	everywhere	everywhere	RB
cord-002728-6oyw5sqv	158	10	the	the	DT
cord-002728-6oyw5sqv	158	11	same	same	JJ
cord-002728-6oyw5sqv	158	12	virus	virus	NN
cord-002728-6oyw5sqv	158	13	?	?	.
cord-002728-6oyw5sqv	159	1	Viral	viral	JJ
cord-002728-6oyw5sqv	159	2	ecology	ecology	NN
cord-002728-6oyw5sqv	159	3	comes	come	VBZ
cord-002728-6oyw5sqv	159	4	of	of	IN
cord-002728-6oyw5sqv	159	5	age	age	NN
cord-002728-6oyw5sqv	159	6	.	.	.
cord-002728-6oyw5sqv	160	1	Environ	Environ	NNP
cord-002728-6oyw5sqv	160	2	Microbiol	Microbiol	NNP
cord-002728-6oyw5sqv	160	3	Rep	Rep	NNP
cord-002728-6oyw5sqv	160	4	Exploiting	exploit	VBG
cord-002728-6oyw5sqv	160	5	gut	gut	NN
cord-002728-6oyw5sqv	160	6	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	160	7	for	for	IN
cord-002728-6oyw5sqv	160	8	human	human	JJ
cord-002728-6oyw5sqv	160	9	health	health	NN
cord-002728-6oyw5sqv	160	10	Characterization	characterization	NN
cord-002728-6oyw5sqv	160	11	of	of	IN
cord-002728-6oyw5sqv	160	12	a	a	DT
cord-002728-6oyw5sqv	160	13	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	160	14	-	-	HYPH
cord-002728-6oyw5sqv	160	15	derived	derive	VBN
cord-002728-6oyw5sqv	160	16	murein	murein	JJ
cord-002728-6oyw5sqv	160	17	peptidase	peptidase	NN
cord-002728-6oyw5sqv	160	18	for	for	IN
cord-002728-6oyw5sqv	160	19	elimination	elimination	NN
cord-002728-6oyw5sqv	160	20	of	of	IN
cord-002728-6oyw5sqv	160	21	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	160	22	-	-	HYPH
cord-002728-6oyw5sqv	160	23	resistant	resistant	JJ
cord-002728-6oyw5sqv	160	24	Staphylococcus	Staphylococcus	NNP
cord-002728-6oyw5sqv	160	25	aureus	aureus	NN
cord-002728-6oyw5sqv	160	26	Ecology	Ecology	NNP
cord-002728-6oyw5sqv	160	27	of	of	IN
cord-002728-6oyw5sqv	160	28	prokaryotic	prokaryotic	JJ
cord-002728-6oyw5sqv	160	29	viruses	virus	NNS
cord-002728-6oyw5sqv	160	30	Bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	160	31	receptors	receptor	NNS
cord-002728-6oyw5sqv	160	32	,	,	,
cord-002728-6oyw5sqv	160	33	mechanisms	mechanism	NNS
cord-002728-6oyw5sqv	160	34	of	of	IN
cord-002728-6oyw5sqv	160	35	phage	phage	NN
cord-002728-6oyw5sqv	160	36	adsorption	adsorption	NN
cord-002728-6oyw5sqv	160	37	and	and	CC
cord-002728-6oyw5sqv	160	38	penetration	penetration	NN
cord-002728-6oyw5sqv	160	39	into	into	IN
cord-002728-6oyw5sqv	160	40	host	host	NN
cord-002728-6oyw5sqv	160	41	cell	cell	NN
cord-002728-6oyw5sqv	160	42	Comparative	Comparative	NNP
cord-002728-6oyw5sqv	160	43	(	(	-LRB-
cord-002728-6oyw5sqv	160	44	meta)genomic	meta)genomic	NNP
cord-002728-6oyw5sqv	160	45	analysis	analysis	NN
cord-002728-6oyw5sqv	160	46	and	and	CC
cord-002728-6oyw5sqv	160	47	ecological	ecological	JJ
cord-002728-6oyw5sqv	160	48	profiling	profiling	NN
cord-002728-6oyw5sqv	160	49	of	of	IN
cord-002728-6oyw5sqv	160	50	human	human	JJ
cord-002728-6oyw5sqv	160	51	gut	gut	NN
cord-002728-6oyw5sqv	160	52	-	-	HYPH
cord-002728-6oyw5sqv	160	53	specific	specific	JJ
cord-002728-6oyw5sqv	160	54	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	160	55	φB124	φb124	CD
cord-002728-6oyw5sqv	160	56	-	-	HYPH
cord-002728-6oyw5sqv	160	57	14	14	CD
cord-002728-6oyw5sqv	160	58	CRISPR	CRISPR	NNP
cord-002728-6oyw5sqv	160	59	targeting	targeting	NN
cord-002728-6oyw5sqv	160	60	reveals	reveal	VBZ
cord-002728-6oyw5sqv	160	61	a	a	DT
cord-002728-6oyw5sqv	160	62	reservoir	reservoir	NN
cord-002728-6oyw5sqv	160	63	of	of	IN
cord-002728-6oyw5sqv	160	64	common	common	JJ
cord-002728-6oyw5sqv	160	65	phages	phage	NNS
cord-002728-6oyw5sqv	160	66	associated	associate	VBN
cord-002728-6oyw5sqv	160	67	with	with	IN
cord-002728-6oyw5sqv	160	68	the	the	DT
cord-002728-6oyw5sqv	160	69	human	human	JJ
cord-002728-6oyw5sqv	160	70	gut	gut	NN
cord-002728-6oyw5sqv	160	71	microbiome	microbiome	NN
cord-002728-6oyw5sqv	160	72	Dysbiosis	Dysbiosis	NNP
cord-002728-6oyw5sqv	160	73	in	in	IN
cord-002728-6oyw5sqv	160	74	inflammatory	inflammatory	JJ
cord-002728-6oyw5sqv	160	75	bowel	bowel	NN
cord-002728-6oyw5sqv	160	76	disease	disease	NN
cord-002728-6oyw5sqv	160	77	:	:	:
cord-002728-6oyw5sqv	160	78	a	a	DT
cord-002728-6oyw5sqv	160	79	role	role	NN
cord-002728-6oyw5sqv	160	80	for	for	IN
cord-002728-6oyw5sqv	160	81	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	160	82	?	?	.
cord-002728-6oyw5sqv	161	1	Characterization	characterization	NN
cord-002728-6oyw5sqv	161	2	of	of	IN
cord-002728-6oyw5sqv	161	3	viruslike	viruslike	JJ
cord-002728-6oyw5sqv	161	4	particles	particle	NNS
cord-002728-6oyw5sqv	161	5	associated	associate	VBN
cord-002728-6oyw5sqv	161	6	with	with	IN
cord-002728-6oyw5sqv	161	7	the	the	DT
cord-002728-6oyw5sqv	161	8	human	human	JJ
cord-002728-6oyw5sqv	161	9	faecal	faecal	JJ
cord-002728-6oyw5sqv	161	10	and	and	CC
cord-002728-6oyw5sqv	161	11	caecal	caecal	JJ
cord-002728-6oyw5sqv	161	12	microbiota	microbiota	NN
cord-002728-6oyw5sqv	161	13	Diversity	diversity	NN
cord-002728-6oyw5sqv	161	14	and	and	CC
cord-002728-6oyw5sqv	161	15	abundance	abundance	NN
cord-002728-6oyw5sqv	161	16	of	of	IN
cord-002728-6oyw5sqv	161	17	single	single	RB
cord-002728-6oyw5sqv	161	18	-	-	HYPH
cord-002728-6oyw5sqv	161	19	stranded	strand	VBN
cord-002728-6oyw5sqv	161	20	DNA	dna	NN
cord-002728-6oyw5sqv	161	21	viruses	virus	NNS
cord-002728-6oyw5sqv	161	22	in	in	IN
cord-002728-6oyw5sqv	161	23	human	human	JJ
cord-002728-6oyw5sqv	161	24	feces	fece	NNS
cord-002728-6oyw5sqv	161	25	Optimizing	optimize	VBG
cord-002728-6oyw5sqv	161	26	protocols	protocol	NNS
cord-002728-6oyw5sqv	161	27	for	for	IN
cord-002728-6oyw5sqv	161	28	extraction	extraction	NN
cord-002728-6oyw5sqv	161	29	of	of	IN
cord-002728-6oyw5sqv	161	30	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	161	31	prior	prior	RB
cord-002728-6oyw5sqv	161	32	to	to	IN
cord-002728-6oyw5sqv	161	33	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	161	34	analyses	analysis	NNS
cord-002728-6oyw5sqv	161	35	of	of	IN
cord-002728-6oyw5sqv	161	36	phage	phage	NN
cord-002728-6oyw5sqv	161	37	communities	community	NNS
cord-002728-6oyw5sqv	161	38	in	in	IN
cord-002728-6oyw5sqv	161	39	the	the	DT
cord-002728-6oyw5sqv	161	40	human	human	JJ
cord-002728-6oyw5sqv	161	41	gut	gut	NN
cord-002728-6oyw5sqv	161	42	Virome	Virome	NNP
cord-002728-6oyw5sqv	161	43	capture	capture	NN
cord-002728-6oyw5sqv	161	44	sequencing	sequencing	NN
cord-002728-6oyw5sqv	161	45	enables	enable	VBZ
cord-002728-6oyw5sqv	161	46	sensitive	sensitive	JJ
cord-002728-6oyw5sqv	161	47	viral	viral	JJ
cord-002728-6oyw5sqv	161	48	diagnosis	diagnosis	NN
cord-002728-6oyw5sqv	161	49	and	and	CC
cord-002728-6oyw5sqv	161	50	comprehensive	comprehensive	JJ
cord-002728-6oyw5sqv	161	51	virome	virome	NN
cord-002728-6oyw5sqv	161	52	analysis	analysis	NN
cord-002728-6oyw5sqv	161	53	Metagenomics	Metagenomics	NNPS
cord-002728-6oyw5sqv	161	54	:	:	:
cord-002728-6oyw5sqv	162	1	genomic	genomic	JJ
cord-002728-6oyw5sqv	162	2	analysis	analysis	NN
cord-002728-6oyw5sqv	162	3	of	of	IN
cord-002728-6oyw5sqv	162	4	microbial	microbial	JJ
cord-002728-6oyw5sqv	162	5	communities	community	NNS
cord-002728-6oyw5sqv	162	6	Richness	Richness	NNP
cord-002728-6oyw5sqv	162	7	of	of	IN
cord-002728-6oyw5sqv	162	8	human	human	JJ
cord-002728-6oyw5sqv	162	9	gut	gut	NN
cord-002728-6oyw5sqv	162	10	microbiome	microbiome	NN
cord-002728-6oyw5sqv	162	11	correlates	correlate	VBZ
cord-002728-6oyw5sqv	162	12	with	with	IN
cord-002728-6oyw5sqv	162	13	metabolic	metabolic	JJ
cord-002728-6oyw5sqv	162	14	markers	marker	NNS
cord-002728-6oyw5sqv	162	15	Dietary	dietary	JJ
cord-002728-6oyw5sqv	162	16	intervention	intervention	NN
cord-002728-6oyw5sqv	162	17	impact	impact	NN
cord-002728-6oyw5sqv	162	18	on	on	IN
cord-002728-6oyw5sqv	162	19	gut	gut	NN
cord-002728-6oyw5sqv	162	20	microbial	microbial	JJ
cord-002728-6oyw5sqv	162	21	gene	gene	NN
cord-002728-6oyw5sqv	163	1	richness	richness	NNP
cord-002728-6oyw5sqv	163	2	Alterations	alteration	NNS
cord-002728-6oyw5sqv	163	3	of	of	IN
cord-002728-6oyw5sqv	163	4	the	the	DT
cord-002728-6oyw5sqv	163	5	human	human	JJ
cord-002728-6oyw5sqv	163	6	gut	gut	NN
cord-002728-6oyw5sqv	163	7	microbiome	microbiome	NN
cord-002728-6oyw5sqv	163	8	in	in	IN
cord-002728-6oyw5sqv	163	9	liver	liver	NN
cord-002728-6oyw5sqv	163	10	cirrhosis	cirrhosis	NN
cord-002728-6oyw5sqv	163	11	Shotgun	shotgun	NN
cord-002728-6oyw5sqv	163	12	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	163	13	of	of	IN
cord-002728-6oyw5sqv	163	14	250	250	CD
cord-002728-6oyw5sqv	163	15	adult	adult	NN
cord-002728-6oyw5sqv	163	16	twins	twin	NNS
cord-002728-6oyw5sqv	163	17	reveals	reveal	VBZ
cord-002728-6oyw5sqv	163	18	genetic	genetic	JJ
cord-002728-6oyw5sqv	163	19	and	and	CC
cord-002728-6oyw5sqv	163	20	environmental	environmental	JJ
cord-002728-6oyw5sqv	163	21	impacts	impact	NNS
cord-002728-6oyw5sqv	163	22	on	on	IN
cord-002728-6oyw5sqv	163	23	the	the	DT
cord-002728-6oyw5sqv	163	24	gut	gut	NN
cord-002728-6oyw5sqv	163	25	microbiome	microbiome	NN
cord-002728-6oyw5sqv	164	1	Metagenomic	Metagenomic	NNP
cord-002728-6oyw5sqv	164	2	analyses	analysis	NNS
cord-002728-6oyw5sqv	164	3	of	of	IN
cord-002728-6oyw5sqv	164	4	an	an	DT
cord-002728-6oyw5sqv	164	5	uncultured	uncultured	JJ
cord-002728-6oyw5sqv	164	6	viral	viral	JJ
cord-002728-6oyw5sqv	164	7	community	community	NN
cord-002728-6oyw5sqv	164	8	from	from	IN
cord-002728-6oyw5sqv	164	9	human	human	JJ
cord-002728-6oyw5sqv	164	10	feces	fece	NNS
cord-002728-6oyw5sqv	165	1	The	the	DT
cord-002728-6oyw5sqv	165	2	human	human	JJ
cord-002728-6oyw5sqv	165	3	gut	gut	NN
cord-002728-6oyw5sqv	165	4	virome	virome	NNP
cord-002728-6oyw5sqv	165	5	:	:	:
cord-002728-6oyw5sqv	165	6	inter	inter	JJ
cord-002728-6oyw5sqv	165	7	-	-	JJ
cord-002728-6oyw5sqv	165	8	individual	individual	JJ
cord-002728-6oyw5sqv	165	9	variation	variation	NN
cord-002728-6oyw5sqv	165	10	and	and	CC
cord-002728-6oyw5sqv	165	11	dynamic	dynamic	JJ
cord-002728-6oyw5sqv	165	12	response	response	NN
cord-002728-6oyw5sqv	165	13	to	to	IN
cord-002728-6oyw5sqv	165	14	diet	diet	NNP
cord-002728-6oyw5sqv	165	15	Genome	Genome	NNP
cord-002728-6oyw5sqv	165	16	signature	signature	NN
cord-002728-6oyw5sqv	165	17	-	-	HYPH
cord-002728-6oyw5sqv	165	18	based	base	VBN
cord-002728-6oyw5sqv	165	19	dissection	dissection	NN
cord-002728-6oyw5sqv	165	20	of	of	IN
cord-002728-6oyw5sqv	165	21	human	human	JJ
cord-002728-6oyw5sqv	165	22	gut	gut	NN
cord-002728-6oyw5sqv	165	23	metagenomes	metagenome	NNS
cord-002728-6oyw5sqv	165	24	to	to	TO
cord-002728-6oyw5sqv	165	25	extract	extract	VB
cord-002728-6oyw5sqv	165	26	subliminal	subliminal	JJ
cord-002728-6oyw5sqv	165	27	viral	viral	JJ
cord-002728-6oyw5sqv	165	28	sequences	sequence	NNS
cord-002728-6oyw5sqv	165	29	A	a	DT
cord-002728-6oyw5sqv	165	30	highly	highly	RB
cord-002728-6oyw5sqv	165	31	abundant	abundant	JJ
cord-002728-6oyw5sqv	165	32	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	165	33	discovered	discover	VBN
cord-002728-6oyw5sqv	165	34	in	in	IN
cord-002728-6oyw5sqv	165	35	the	the	DT
cord-002728-6oyw5sqv	165	36	unknown	unknown	JJ
cord-002728-6oyw5sqv	165	37	sequences	sequence	NNS
cord-002728-6oyw5sqv	165	38	of	of	IN
cord-002728-6oyw5sqv	165	39	human	human	JJ
cord-002728-6oyw5sqv	165	40	faecal	faecal	JJ
cord-002728-6oyw5sqv	165	41	metagenomes	metagenomes	NNP
cord-002728-6oyw5sqv	166	1	The	the	DT
cord-002728-6oyw5sqv	166	2	application	application	NN
cord-002728-6oyw5sqv	166	3	of	of	IN
cord-002728-6oyw5sqv	166	4	a	a	DT
cord-002728-6oyw5sqv	166	5	recently	recently	RB
cord-002728-6oyw5sqv	166	6	isolated	isolate	VBN
cord-002728-6oyw5sqv	166	7	strain	strain	NN
cord-002728-6oyw5sqv	166	8	of	of	IN
cord-002728-6oyw5sqv	166	9	Bacteroides	Bacteroides	NNP
cord-002728-6oyw5sqv	166	10	(	(	-LRB-
cord-002728-6oyw5sqv	166	11	GB-124	GB-124	NNP
cord-002728-6oyw5sqv	166	12	)	)	-RRB-
cord-002728-6oyw5sqv	166	13	to	to	TO
cord-002728-6oyw5sqv	166	14	identify	identify	VB
cord-002728-6oyw5sqv	166	15	human	human	JJ
cord-002728-6oyw5sqv	166	16	sources	source	NNS
cord-002728-6oyw5sqv	166	17	of	of	IN
cord-002728-6oyw5sqv	166	18	faecal	faecal	JJ
cord-002728-6oyw5sqv	166	19	pollution	pollution	NN
cord-002728-6oyw5sqv	166	20	in	in	IN
cord-002728-6oyw5sqv	166	21	a	a	DT
cord-002728-6oyw5sqv	166	22	temperate	temperate	JJ
cord-002728-6oyw5sqv	166	23	river	river	NN
cord-002728-6oyw5sqv	166	24	catchment	catchment	NN
cord-002728-6oyw5sqv	166	25	Evolution	evolution	NN
cord-002728-6oyw5sqv	166	26	and	and	CC
cord-002728-6oyw5sqv	166	27	diversity	diversity	NN
cord-002728-6oyw5sqv	166	28	of	of	IN
cord-002728-6oyw5sqv	166	29	the	the	DT
cord-002728-6oyw5sqv	166	30	Microviridae	Microviridae	NNP
cord-002728-6oyw5sqv	166	31	viral	viral	JJ
cord-002728-6oyw5sqv	166	32	family	family	NN
cord-002728-6oyw5sqv	166	33	through	through	IN
cord-002728-6oyw5sqv	166	34	a	a	DT
cord-002728-6oyw5sqv	166	35	collection	collection	NN
cord-002728-6oyw5sqv	166	36	of	of	IN
cord-002728-6oyw5sqv	166	37	81	81	CD
cord-002728-6oyw5sqv	166	38	new	new	JJ
cord-002728-6oyw5sqv	166	39	complete	complete	JJ
cord-002728-6oyw5sqv	166	40	genomes	genome	NNS
cord-002728-6oyw5sqv	166	41	assembled	assemble	VBN
cord-002728-6oyw5sqv	166	42	from	from	IN
cord-002728-6oyw5sqv	166	43	virome	virome	NNP
cord-002728-6oyw5sqv	166	44	reads	read	VBZ
cord-002728-6oyw5sqv	166	45	New	new	JJ
cord-002728-6oyw5sqv	166	46	viruses	virus	NNS
cord-002728-6oyw5sqv	166	47	in	in	IN
cord-002728-6oyw5sqv	166	48	idiopathic	idiopathic	JJ
cord-002728-6oyw5sqv	166	49	human	human	JJ
cord-002728-6oyw5sqv	166	50	diarrhea	diarrhea	NN
cord-002728-6oyw5sqv	166	51	cases	case	NNS
cord-002728-6oyw5sqv	166	52	,	,	,
cord-002728-6oyw5sqv	166	53	the	the	DT
cord-002728-6oyw5sqv	166	54	Netherlands	Netherlands	NNP
cord-002728-6oyw5sqv	166	55	Viral	Viral	NNP
cord-002728-6oyw5sqv	166	56	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	166	57	applied	apply	VBN
cord-002728-6oyw5sqv	166	58	to	to	IN
cord-002728-6oyw5sqv	166	59	blood	blood	NN
cord-002728-6oyw5sqv	166	60	donors	donor	NNS
cord-002728-6oyw5sqv	166	61	and	and	CC
cord-002728-6oyw5sqv	166	62	recipients	recipient	NNS
cord-002728-6oyw5sqv	166	63	at	at	IN
cord-002728-6oyw5sqv	166	64	high	high	JJ
cord-002728-6oyw5sqv	166	65	risk	risk	NN
cord-002728-6oyw5sqv	166	66	for	for	IN
cord-002728-6oyw5sqv	166	67	blood	blood	NN
cord-002728-6oyw5sqv	166	68	-	-	HYPH
cord-002728-6oyw5sqv	166	69	borne	bear	VBN
cord-002728-6oyw5sqv	166	70	infections	infection	NNS
cord-002728-6oyw5sqv	166	71	Viruses	virus	NNS
cord-002728-6oyw5sqv	166	72	in	in	IN
cord-002728-6oyw5sqv	166	73	the	the	DT
cord-002728-6oyw5sqv	166	74	faecal	faecal	JJ
cord-002728-6oyw5sqv	166	75	microbiota	microbiota	NN
cord-002728-6oyw5sqv	166	76	of	of	IN
cord-002728-6oyw5sqv	166	77	monozygotic	monozygotic	JJ
cord-002728-6oyw5sqv	166	78	twins	twin	NNS
cord-002728-6oyw5sqv	166	79	and	and	CC
cord-002728-6oyw5sqv	166	80	their	-PRON-	PRP$
cord-002728-6oyw5sqv	166	81	mothers	mother	NNS
cord-002728-6oyw5sqv	166	82	Healthy	healthy	JJ
cord-002728-6oyw5sqv	166	83	human	human	JJ
cord-002728-6oyw5sqv	166	84	gut	gut	NN
cord-002728-6oyw5sqv	166	85	phageome	phageome	NN
cord-002728-6oyw5sqv	166	86	Disease	Disease	NNP
cord-002728-6oyw5sqv	166	87	-	-	HYPH
cord-002728-6oyw5sqv	166	88	specific	specific	JJ
cord-002728-6oyw5sqv	166	89	alterations	alteration	NNS
cord-002728-6oyw5sqv	166	90	in	in	IN
cord-002728-6oyw5sqv	166	91	the	the	DT
cord-002728-6oyw5sqv	166	92	enteric	enteric	JJ
cord-002728-6oyw5sqv	166	93	virome	virome	NN
cord-002728-6oyw5sqv	166	94	in	in	IN
cord-002728-6oyw5sqv	166	95	inflammatory	inflammatory	JJ
cord-002728-6oyw5sqv	166	96	bowel	bowel	NN
cord-002728-6oyw5sqv	166	97	disease	disease	NN
cord-002728-6oyw5sqv	167	1	The	the	DT
cord-002728-6oyw5sqv	167	2	human	human	JJ
cord-002728-6oyw5sqv	167	3	gut	gut	NN
cord-002728-6oyw5sqv	167	4	phage	phage	NN
cord-002728-6oyw5sqv	167	5	community	community	NN
cord-002728-6oyw5sqv	167	6	and	and	CC
cord-002728-6oyw5sqv	167	7	its	-PRON-	PRP$
cord-002728-6oyw5sqv	167	8	implications	implication	NNS
cord-002728-6oyw5sqv	167	9	for	for	IN
cord-002728-6oyw5sqv	167	10	health	health	NN
cord-002728-6oyw5sqv	167	11	and	and	CC
cord-002728-6oyw5sqv	167	12	disease	disease	NN
cord-002728-6oyw5sqv	167	13	Hypervariable	hypervariable	JJ
cord-002728-6oyw5sqv	167	14	loci	locus	NNS
cord-002728-6oyw5sqv	167	15	in	in	IN
cord-002728-6oyw5sqv	167	16	the	the	DT
cord-002728-6oyw5sqv	167	17	human	human	JJ
cord-002728-6oyw5sqv	167	18	gut	gut	NN
cord-002728-6oyw5sqv	167	19	virome	virome	NN
cord-002728-6oyw5sqv	167	20	Viral	viral	JJ
cord-002728-6oyw5sqv	167	21	diversity	diversity	NN
cord-002728-6oyw5sqv	167	22	and	and	CC
cord-002728-6oyw5sqv	167	23	dynamics	dynamic	NNS
cord-002728-6oyw5sqv	167	24	in	in	IN
cord-002728-6oyw5sqv	167	25	an	an	DT
cord-002728-6oyw5sqv	167	26	infant	infant	NN
cord-002728-6oyw5sqv	167	27	gut	gut	NN
cord-002728-6oyw5sqv	167	28	Rapid	rapid	JJ
cord-002728-6oyw5sqv	167	29	evolution	evolution	NN
cord-002728-6oyw5sqv	167	30	of	of	IN
cord-002728-6oyw5sqv	167	31	the	the	DT
cord-002728-6oyw5sqv	167	32	human	human	JJ
cord-002728-6oyw5sqv	167	33	gut	gut	NN
cord-002728-6oyw5sqv	167	34	virome	virome	NNP
cord-002728-6oyw5sqv	167	35	Bacteriophage	Bacteriophage	NNP
cord-002728-6oyw5sqv	167	36	adhering	adhere	VBG
cord-002728-6oyw5sqv	167	37	to	to	IN
cord-002728-6oyw5sqv	167	38	mucus	mucus	NN
cord-002728-6oyw5sqv	167	39	provide	provide	VB
cord-002728-6oyw5sqv	167	40	a	a	DT
cord-002728-6oyw5sqv	167	41	non	non	JJ
cord-002728-6oyw5sqv	167	42	-	-	JJ
cord-002728-6oyw5sqv	167	43	host	host	JJ
cord-002728-6oyw5sqv	167	44	-	-	HYPH
cord-002728-6oyw5sqv	167	45	derived	derive	VBN
cord-002728-6oyw5sqv	167	46	immunity	immunity	NN
cord-002728-6oyw5sqv	167	47	Effects	effect	NNS
cord-002728-6oyw5sqv	167	48	of	of	IN
cord-002728-6oyw5sqv	167	49	long	long	JJ
cord-002728-6oyw5sqv	167	50	term	term	NN
cord-002728-6oyw5sqv	167	51	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	167	52	therapy	therapy	NN
cord-002728-6oyw5sqv	167	53	on	on	IN
cord-002728-6oyw5sqv	167	54	human	human	JJ
cord-002728-6oyw5sqv	167	55	oral	oral	JJ
cord-002728-6oyw5sqv	167	56	and	and	CC
cord-002728-6oyw5sqv	167	57	fecal	fecal	JJ
cord-002728-6oyw5sqv	167	58	viromes	virome	NNS
cord-002728-6oyw5sqv	168	1	Quinolone	Quinolone	NNP
cord-002728-6oyw5sqv	168	2	antibiotics	antibiotic	NNS
cord-002728-6oyw5sqv	168	3	induce	induce	VBP
cord-002728-6oyw5sqv	168	4	Shiga	Shiga	NNP
cord-002728-6oyw5sqv	168	5	toxin	toxin	NN
cord-002728-6oyw5sqv	168	6	-	-	HYPH
cord-002728-6oyw5sqv	168	7	encoding	encode	VBG
cord-002728-6oyw5sqv	168	8	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	168	9	,	,	,
cord-002728-6oyw5sqv	168	10	toxin	toxin	NN
cord-002728-6oyw5sqv	168	11	production	production	NN
cord-002728-6oyw5sqv	168	12	,	,	,
cord-002728-6oyw5sqv	168	13	and	and	CC
cord-002728-6oyw5sqv	168	14	death	death	NN
cord-002728-6oyw5sqv	168	15	in	in	IN
cord-002728-6oyw5sqv	168	16	mice	mouse	NNS
cord-002728-6oyw5sqv	168	17	Metagenomic	Metagenomic	NNP
cord-002728-6oyw5sqv	168	18	analysis	analysis	NN
cord-002728-6oyw5sqv	168	19	of	of	IN
cord-002728-6oyw5sqv	168	20	respiratory	respiratory	JJ
cord-002728-6oyw5sqv	168	21	tract	tract	NN
cord-002728-6oyw5sqv	168	22	DNA	dna	NN
cord-002728-6oyw5sqv	168	23	viral	viral	JJ
cord-002728-6oyw5sqv	168	24	communities	community	NNS
cord-002728-6oyw5sqv	168	25	in	in	IN
cord-002728-6oyw5sqv	168	26	cystic	cystic	JJ
cord-002728-6oyw5sqv	168	27	fibrosis	fibrosis	NN
cord-002728-6oyw5sqv	168	28	and	and	CC
cord-002728-6oyw5sqv	169	1	non	non	JJ
cord-002728-6oyw5sqv	169	2	-	-	JJ
cord-002728-6oyw5sqv	169	3	cystic	cystic	JJ
cord-002728-6oyw5sqv	169	4	fibrosis	fibrosis	NN
cord-002728-6oyw5sqv	169	5	individuals	individual	NNS
cord-002728-6oyw5sqv	169	6	Transmission	Transmission	NNP
cord-002728-6oyw5sqv	169	7	of	of	IN
cord-002728-6oyw5sqv	169	8	viruses	virus	NNS
cord-002728-6oyw5sqv	169	9	via	via	IN
cord-002728-6oyw5sqv	169	10	our	-PRON-	PRP$
cord-002728-6oyw5sqv	169	11	microbiomes	microbiome	NNS
cord-002728-6oyw5sqv	169	12	Phages	Phages	NNPS
cord-002728-6oyw5sqv	169	13	rarely	rarely	RB
cord-002728-6oyw5sqv	169	14	encode	encode	VBP
cord-002728-6oyw5sqv	169	15	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	169	16	resistance	resistance	NN
cord-002728-6oyw5sqv	169	17	genes	gene	NNS
cord-002728-6oyw5sqv	169	18	:	:	:
cord-002728-6oyw5sqv	169	19	a	a	DT
cord-002728-6oyw5sqv	169	20	cautionary	cautionary	JJ
cord-002728-6oyw5sqv	169	21	tale	tale	NN
cord-002728-6oyw5sqv	169	22	for	for	IN
cord-002728-6oyw5sqv	169	23	virome	virome	NN
cord-002728-6oyw5sqv	169	24	analyses	analyse	VBZ
cord-002728-6oyw5sqv	169	25	Single	Single	NNP
cord-002728-6oyw5sqv	169	26	-	-	HYPH
cord-002728-6oyw5sqv	169	27	stranded	strand	VBN
cord-002728-6oyw5sqv	169	28	DNA	dna	NN
cord-002728-6oyw5sqv	169	29	library	library	NN
cord-002728-6oyw5sqv	169	30	preparation	preparation	NN
cord-002728-6oyw5sqv	169	31	for	for	IN
cord-002728-6oyw5sqv	169	32	the	the	DT
cord-002728-6oyw5sqv	169	33	sequencing	sequencing	NN
cord-002728-6oyw5sqv	169	34	of	of	IN
cord-002728-6oyw5sqv	169	35	ancient	ancient	JJ
cord-002728-6oyw5sqv	169	36	or	or	CC
cord-002728-6oyw5sqv	169	37	damaged	damaged	JJ
cord-002728-6oyw5sqv	169	38	DNA	DNA	NNP
cord-002728-6oyw5sqv	169	39	Structure	Structure	NNP
cord-002728-6oyw5sqv	169	40	and	and	CC
cord-002728-6oyw5sqv	169	41	diversity	diversity	NN
cord-002728-6oyw5sqv	169	42	of	of	IN
cord-002728-6oyw5sqv	169	43	ssDNA	ssDNA	VBG
cord-002728-6oyw5sqv	169	44	Microviridae	Microviridae	NNP
cord-002728-6oyw5sqv	169	45	viruses	virus	NNS
cord-002728-6oyw5sqv	169	46	in	in	IN
cord-002728-6oyw5sqv	169	47	two	two	CD
cord-002728-6oyw5sqv	169	48	peri	peri	JJ
cord-002728-6oyw5sqv	169	49	-	-	HYPH
cord-002728-6oyw5sqv	169	50	alpine	alpine	JJ
cord-002728-6oyw5sqv	169	51	lakes	lake	NNS
cord-002728-6oyw5sqv	169	52	(	(	-LRB-
cord-002728-6oyw5sqv	169	53	Annecy	Annecy	NNP
cord-002728-6oyw5sqv	169	54	and	and	CC
cord-002728-6oyw5sqv	169	55	Bourget	Bourget	NNP
cord-002728-6oyw5sqv	169	56	,	,	,
cord-002728-6oyw5sqv	169	57	France	France	NNP
cord-002728-6oyw5sqv	169	58	)	)	-RRB-
cord-002728-6oyw5sqv	170	1	Towards	towards	IN
cord-002728-6oyw5sqv	170	2	quantitative	quantitative	JJ
cord-002728-6oyw5sqv	170	3	viromics	viromic	NNS
cord-002728-6oyw5sqv	170	4	for	for	IN
cord-002728-6oyw5sqv	170	5	both	both	DT
cord-002728-6oyw5sqv	170	6	double	double	RB
cord-002728-6oyw5sqv	170	7	-	-	HYPH
cord-002728-6oyw5sqv	170	8	stranded	stranded	JJ
cord-002728-6oyw5sqv	170	9	and	and	CC
cord-002728-6oyw5sqv	170	10	single	single	RB
cord-002728-6oyw5sqv	170	11	-	-	HYPH
cord-002728-6oyw5sqv	170	12	stranded	strand	VBN
cord-002728-6oyw5sqv	170	13	DNA	dna	NN
cord-002728-6oyw5sqv	170	14	viruses	virus	NNS
cord-002728-6oyw5sqv	170	15	Distribution	distribution	NN
cord-002728-6oyw5sqv	170	16	of	of	IN
cord-002728-6oyw5sqv	170	17	ribonucleic	ribonucleic	JJ
cord-002728-6oyw5sqv	170	18	acid	acid	NN
cord-002728-6oyw5sqv	170	19	coliphages	coliphage	NNS
cord-002728-6oyw5sqv	170	20	in	in	IN
cord-002728-6oyw5sqv	170	21	animals	animal	NNS
cord-002728-6oyw5sqv	170	22	RNA	RNA	NNP
cord-002728-6oyw5sqv	170	23	viral	viral	JJ
cord-002728-6oyw5sqv	170	24	community	community	NN
cord-002728-6oyw5sqv	170	25	in	in	IN
cord-002728-6oyw5sqv	170	26	human	human	JJ
cord-002728-6oyw5sqv	170	27	feces	fece	NNS
cord-002728-6oyw5sqv	170	28	:	:	:
cord-002728-6oyw5sqv	170	29	prevalence	prevalence	NN
cord-002728-6oyw5sqv	170	30	of	of	IN
cord-002728-6oyw5sqv	170	31	plant	plant	NN
cord-002728-6oyw5sqv	170	32	pathogenic	pathogenic	JJ
cord-002728-6oyw5sqv	170	33	viruses	virus	NNS
cord-002728-6oyw5sqv	170	34	Direct	direct	JJ
cord-002728-6oyw5sqv	170	35	metagenomic	metagenomic	JJ
cord-002728-6oyw5sqv	170	36	detection	detection	NN
cord-002728-6oyw5sqv	170	37	of	of	IN
cord-002728-6oyw5sqv	170	38	viral	viral	JJ
cord-002728-6oyw5sqv	170	39	pathogens	pathogen	NNS
cord-002728-6oyw5sqv	170	40	in	in	IN
cord-002728-6oyw5sqv	170	41	nasal	nasal	NN
cord-002728-6oyw5sqv	170	42	and	and	CC
cord-002728-6oyw5sqv	170	43	fecal	fecal	JJ
cord-002728-6oyw5sqv	170	44	specimens	specimen	NNS
cord-002728-6oyw5sqv	170	45	using	use	VBG
cord-002728-6oyw5sqv	170	46	an	an	DT
cord-002728-6oyw5sqv	170	47	unbiased	unbiased	JJ
cord-002728-6oyw5sqv	170	48	high	high	JJ
cord-002728-6oyw5sqv	170	49	-	-	HYPH
cord-002728-6oyw5sqv	170	50	throughput	throughput	NN
cord-002728-6oyw5sqv	170	51	sequencing	sequencing	NN
cord-002728-6oyw5sqv	170	52	approach	approach	NN
cord-002728-6oyw5sqv	170	53	Early	early	JJ
cord-002728-6oyw5sqv	170	54	life	life	NN
cord-002728-6oyw5sqv	170	55	dynamics	dynamic	NNS
cord-002728-6oyw5sqv	170	56	of	of	IN
cord-002728-6oyw5sqv	170	57	the	the	DT
cord-002728-6oyw5sqv	170	58	human	human	JJ
cord-002728-6oyw5sqv	170	59	gut	gut	NN
cord-002728-6oyw5sqv	170	60	virome	virome	NN
cord-002728-6oyw5sqv	170	61	and	and	CC
cord-002728-6oyw5sqv	170	62	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	170	63	microbiome	microbiome	NN
cord-002728-6oyw5sqv	170	64	in	in	IN
cord-002728-6oyw5sqv	170	65	infants	infant	NNS
cord-002728-6oyw5sqv	171	1	Longitudinal	longitudinal	JJ
cord-002728-6oyw5sqv	171	2	investigation	investigation	NN
cord-002728-6oyw5sqv	171	3	of	of	IN
cord-002728-6oyw5sqv	171	4	the	the	DT
cord-002728-6oyw5sqv	171	5	faecal	faecal	JJ
cord-002728-6oyw5sqv	171	6	microbiota	microbiota	NN
cord-002728-6oyw5sqv	171	7	of	of	IN
cord-002728-6oyw5sqv	171	8	healthy	healthy	JJ
cord-002728-6oyw5sqv	171	9	full	full	JJ
cord-002728-6oyw5sqv	171	10	-	-	HYPH
cord-002728-6oyw5sqv	171	11	term	term	NN
cord-002728-6oyw5sqv	171	12	infants	infant	NNS
cord-002728-6oyw5sqv	171	13	using	use	VBG
cord-002728-6oyw5sqv	171	14	fluorescence	fluorescence	NN
cord-002728-6oyw5sqv	171	15	in	in	IN
cord-002728-6oyw5sqv	171	16	situ	situ	NN
cord-002728-6oyw5sqv	171	17	hybridization	hybridization	NN
cord-002728-6oyw5sqv	171	18	and	and	CC
cord-002728-6oyw5sqv	171	19	denaturing	denature	VBG
cord-002728-6oyw5sqv	171	20	gradient	gradient	NN
cord-002728-6oyw5sqv	171	21	gel	gel	NN
cord-002728-6oyw5sqv	171	22	electrophoresis	electrophoresis	NN
cord-002728-6oyw5sqv	171	23	.	.	.
cord-002728-6oyw5sqv	172	1	Microbiology	Microbiology	NNP
cord-002728-6oyw5sqv	172	2	Improved	Improved	NNP
cord-002728-6oyw5sqv	172	3	detection	detection	NN
cord-002728-6oyw5sqv	172	4	of	of	IN
cord-002728-6oyw5sqv	172	5	bifidobacteria	bifidobacteria	NNP
cord-002728-6oyw5sqv	172	6	with	with	IN
cord-002728-6oyw5sqv	172	7	optimised	optimise	VBN
cord-002728-6oyw5sqv	172	8	16S	16S	NNP
cord-002728-6oyw5sqv	172	9	rRNA	rrna	NN
cord-002728-6oyw5sqv	172	10	-	-	HYPH
cord-002728-6oyw5sqv	172	11	gene	gene	NN
cord-002728-6oyw5sqv	172	12	based	base	VBN
cord-002728-6oyw5sqv	172	13	pyrosequencing	pyrosequencing	NNP
cord-002728-6oyw5sqv	172	14	16S	16S	NNP
cord-002728-6oyw5sqv	172	15	rRNA	rRNA	NNP
cord-002728-6oyw5sqv	172	16	gene	gene	NN
cord-002728-6oyw5sqv	172	17	-	-	HYPH
cord-002728-6oyw5sqv	172	18	based	base	VBN
cord-002728-6oyw5sqv	172	19	profiling	profiling	NN
cord-002728-6oyw5sqv	172	20	of	of	IN
cord-002728-6oyw5sqv	172	21	the	the	DT
cord-002728-6oyw5sqv	172	22	human	human	JJ
cord-002728-6oyw5sqv	172	23	infant	infant	NN
cord-002728-6oyw5sqv	172	24	gut	gut	NN
cord-002728-6oyw5sqv	172	25	microbiota	microbiota	NN
cord-002728-6oyw5sqv	172	26	is	be	VBZ
cord-002728-6oyw5sqv	172	27	strongly	strongly	RB
cord-002728-6oyw5sqv	172	28	influenced	influence	VBN
cord-002728-6oyw5sqv	172	29	by	by	IN
cord-002728-6oyw5sqv	172	30	sample	sample	NN
cord-002728-6oyw5sqv	172	31	processing	processing	NN
cord-002728-6oyw5sqv	172	32	and	and	CC
cord-002728-6oyw5sqv	172	33	PCR	PCR	NNP
cord-002728-6oyw5sqv	172	34	primer	primer	NN
cord-002728-6oyw5sqv	172	35	choice	choice	NN
cord-002728-6oyw5sqv	173	1	Gut	gut	NN
cord-002728-6oyw5sqv	173	2	DNA	dna	NN
cord-002728-6oyw5sqv	173	3	viromes	virome	NNS
cord-002728-6oyw5sqv	173	4	of	of	IN
cord-002728-6oyw5sqv	173	5	Malawian	malawian	JJ
cord-002728-6oyw5sqv	173	6	twins	twin	NNS
cord-002728-6oyw5sqv	173	7	discordant	discordant	JJ
cord-002728-6oyw5sqv	173	8	for	for	IN
cord-002728-6oyw5sqv	173	9	severe	severe	JJ
cord-002728-6oyw5sqv	173	10	acute	acute	JJ
cord-002728-6oyw5sqv	173	11	malnutrition	malnutrition	NN
cord-002728-6oyw5sqv	173	12	Bacteriophage	Bacteriophage	NNP
cord-002728-6oyw5sqv	173	13	translocation	translocation	NN
cord-002728-6oyw5sqv	173	14	Altered	alter	VBD
cord-002728-6oyw5sqv	173	15	virome	virome	NN
cord-002728-6oyw5sqv	173	16	and	and	CC
cord-002728-6oyw5sqv	173	17	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	173	18	microbiome	microbiome	NN
cord-002728-6oyw5sqv	173	19	in	in	IN
cord-002728-6oyw5sqv	173	20	human	human	JJ
cord-002728-6oyw5sqv	173	21	immunodeficiency	immunodeficiency	NN
cord-002728-6oyw5sqv	173	22	virus	virus	NN
cord-002728-6oyw5sqv	173	23	-	-	HYPH
cord-002728-6oyw5sqv	173	24	associated	associate	VBN
cord-002728-6oyw5sqv	173	25	acquired	acquire	VBN
cord-002728-6oyw5sqv	173	26	immunodeficiency	immunodeficiency	NN
cord-002728-6oyw5sqv	173	27	syndrome	syndrome	NN
cord-002728-6oyw5sqv	173	28	Detection	detection	NN
cord-002728-6oyw5sqv	173	29	and	and	CC
cord-002728-6oyw5sqv	173	30	identification	identification	NN
cord-002728-6oyw5sqv	173	31	of	of	IN
cord-002728-6oyw5sqv	173	32	plasma	plasma	NN
cord-002728-6oyw5sqv	173	33	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	173	34	and	and	CC
cord-002728-6oyw5sqv	173	35	viral	viral	JJ
cord-002728-6oyw5sqv	173	36	elements	element	NNS
cord-002728-6oyw5sqv	173	37	in	in	IN
cord-002728-6oyw5sqv	173	38	HIV	HIV	NNP
cord-002728-6oyw5sqv	173	39	/	/	SYM
cord-002728-6oyw5sqv	173	40	AIDS	AIDS	NNP
cord-002728-6oyw5sqv	173	41	patients	patient	NNS
cord-002728-6oyw5sqv	173	42	in	in	IN
cord-002728-6oyw5sqv	173	43	comparison	comparison	NN
cord-002728-6oyw5sqv	173	44	to	to	IN
cord-002728-6oyw5sqv	173	45	healthy	healthy	JJ
cord-002728-6oyw5sqv	173	46	adults	adult	NNS
cord-002728-6oyw5sqv	173	47	Method	Method	NNP
cord-002728-6oyw5sqv	173	48	for	for	IN
cord-002728-6oyw5sqv	173	49	discovering	discover	VBG
cord-002728-6oyw5sqv	173	50	novel	novel	JJ
cord-002728-6oyw5sqv	173	51	DNA	dna	NN
cord-002728-6oyw5sqv	173	52	viruses	virus	NNS
cord-002728-6oyw5sqv	173	53	in	in	IN
cord-002728-6oyw5sqv	173	54	blood	blood	NN
cord-002728-6oyw5sqv	173	55	using	use	VBG
cord-002728-6oyw5sqv	173	56	viral	viral	JJ
cord-002728-6oyw5sqv	173	57	particle	particle	NN
cord-002728-6oyw5sqv	173	58	selection	selection	NN
cord-002728-6oyw5sqv	173	59	and	and	CC
cord-002728-6oyw5sqv	173	60	shotgun	shotgun	NN
cord-002728-6oyw5sqv	173	61	sequencing	sequence	VBG
cord-002728-6oyw5sqv	173	62	The	the	DT
cord-002728-6oyw5sqv	173	63	antibody	antibody	NN
cord-002728-6oyw5sqv	173	64	response	response	NN
cord-002728-6oyw5sqv	173	65	to	to	IN
cord-002728-6oyw5sqv	173	66	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	173	67	phi	phi	NNP
cord-002728-6oyw5sqv	173	68	-	-	HYPH
cord-002728-6oyw5sqv	173	69	X	X	NNP
cord-002728-6oyw5sqv	173	70	174	174	CD
cord-002728-6oyw5sqv	173	71	in	in	IN
cord-002728-6oyw5sqv	173	72	newborn	newborn	JJ
cord-002728-6oyw5sqv	173	73	premature	premature	JJ
cord-002728-6oyw5sqv	173	74	infants	infant	NNS
cord-002728-6oyw5sqv	173	75	Tumor	tumor	NN
cord-002728-6oyw5sqv	173	76	-	-	HYPH
cord-002728-6oyw5sqv	173	77	specific	specific	JJ
cord-002728-6oyw5sqv	173	78	bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	173	79	induce	induce	VBP
cord-002728-6oyw5sqv	173	80	tumor	tumor	NN
cord-002728-6oyw5sqv	173	81	destruction	destruction	NN
cord-002728-6oyw5sqv	173	82	through	through	IN
cord-002728-6oyw5sqv	173	83	activation	activation	NN
cord-002728-6oyw5sqv	173	84	of	of	IN
cord-002728-6oyw5sqv	173	85	tumor	tumor	NN
cord-002728-6oyw5sqv	173	86	-	-	HYPH
cord-002728-6oyw5sqv	173	87	associated	associate	VBN
cord-002728-6oyw5sqv	173	88	macrophages	macrophage	NNS
cord-002728-6oyw5sqv	174	1	An	an	DT
cord-002728-6oyw5sqv	174	2	enteric	enteric	JJ
cord-002728-6oyw5sqv	174	3	virus	virus	NN
cord-002728-6oyw5sqv	174	4	can	can	MD
cord-002728-6oyw5sqv	174	5	replace	replace	VB
cord-002728-6oyw5sqv	174	6	the	the	DT
cord-002728-6oyw5sqv	174	7	beneficial	beneficial	JJ
cord-002728-6oyw5sqv	174	8	function	function	NN
cord-002728-6oyw5sqv	174	9	of	of	IN
cord-002728-6oyw5sqv	174	10	commensal	commensal	JJ
cord-002728-6oyw5sqv	174	11	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	174	12	Efficacy	Efficacy	NNP
cord-002728-6oyw5sqv	174	13	of	of	IN
cord-002728-6oyw5sqv	174	14	sterile	sterile	JJ
cord-002728-6oyw5sqv	174	15	fecal	fecal	JJ
cord-002728-6oyw5sqv	174	16	filtrate	filtrate	NN
cord-002728-6oyw5sqv	174	17	transfer	transfer	NN
cord-002728-6oyw5sqv	174	18	for	for	IN
cord-002728-6oyw5sqv	174	19	treating	treat	VBG
cord-002728-6oyw5sqv	174	20	patients	patient	NNS
cord-002728-6oyw5sqv	174	21	with	with	IN
cord-002728-6oyw5sqv	174	22	Clostridium	clostridium	NN
cord-002728-6oyw5sqv	174	23	difficile	difficile	NN
cord-002728-6oyw5sqv	174	24	infection	infection	NN
cord-002728-6oyw5sqv	174	25	Bacteriophage	Bacteriophage	NNP
cord-002728-6oyw5sqv	174	26	transfer	transfer	NN
cord-002728-6oyw5sqv	174	27	during	during	IN
cord-002728-6oyw5sqv	174	28	faecal	faecal	JJ
cord-002728-6oyw5sqv	174	29	microbiota	microbiota	NN
cord-002728-6oyw5sqv	174	30	transplantation	transplantation	NN
cord-002728-6oyw5sqv	174	31	in	in	IN
cord-002728-6oyw5sqv	174	32	Clostridium	clostridium	NN
cord-002728-6oyw5sqv	174	33	difficile	difficile	NN
cord-002728-6oyw5sqv	174	34	infection	infection	NN
cord-002728-6oyw5sqv	174	35	is	be	VBZ
cord-002728-6oyw5sqv	174	36	associated	associate	VBN
cord-002728-6oyw5sqv	174	37	with	with	IN
cord-002728-6oyw5sqv	174	38	treatment	treatment	NN
cord-002728-6oyw5sqv	174	39	outcome	outcome	NN
cord-002728-6oyw5sqv	174	40	Virus	virus	NN
cord-002728-6oyw5sqv	174	41	-	-	HYPH
cord-002728-6oyw5sqv	174	42	plus	plus	CC
cord-002728-6oyw5sqv	174	43	-	-	HYPH
cord-002728-6oyw5sqv	174	44	susceptibility	susceptibility	NN
cord-002728-6oyw5sqv	174	45	gene	gene	NN
cord-002728-6oyw5sqv	174	46	interaction	interaction	NN
cord-002728-6oyw5sqv	174	47	determines	determine	VBZ
cord-002728-6oyw5sqv	174	48	Crohn	Crohn	NNP
cord-002728-6oyw5sqv	174	49	's	's	POS
cord-002728-6oyw5sqv	174	50	disease	disease	NN
cord-002728-6oyw5sqv	174	51	gene	gene	NN
cord-002728-6oyw5sqv	174	52	Atg16L1	Atg16L1	NNP
cord-002728-6oyw5sqv	174	53	phenotypes	phenotype	NNS
cord-002728-6oyw5sqv	174	54	in	in	IN
cord-002728-6oyw5sqv	174	55	intestine	intestine	NN
cord-002728-6oyw5sqv	174	56	Enteric	enteric	JJ
cord-002728-6oyw5sqv	174	57	viruses	virus	NNS
cord-002728-6oyw5sqv	174	58	ameliorate	ameliorate	VBP
cord-002728-6oyw5sqv	174	59	gut	gut	NN
cord-002728-6oyw5sqv	174	60	inflammation	inflammation	NN
cord-002728-6oyw5sqv	174	61	via	via	IN
cord-002728-6oyw5sqv	174	62	Toll	toll	NN
cord-002728-6oyw5sqv	174	63	-	-	HYPH
cord-002728-6oyw5sqv	174	64	like	like	JJ
cord-002728-6oyw5sqv	174	65	receptor	receptor	NN
cord-002728-6oyw5sqv	174	66	3	3	CD
cord-002728-6oyw5sqv	174	67	and	and	CC
cord-002728-6oyw5sqv	174	68	Toll	Toll	NNP
cord-002728-6oyw5sqv	174	69	-	-	HYPH
cord-002728-6oyw5sqv	174	70	like	like	JJ
cord-002728-6oyw5sqv	174	71	receptor	receptor	NN
cord-002728-6oyw5sqv	174	72	7-mediated	7-mediated	CD
cord-002728-6oyw5sqv	174	73	interferon	interferon	NN
cord-002728-6oyw5sqv	174	74	-	-	HYPH
cord-002728-6oyw5sqv	174	75	b	b	NN
cord-002728-6oyw5sqv	174	76	production	production	NN
cord-002728-6oyw5sqv	174	77	Bacteriophages	bacteriophage	NNS
cord-002728-6oyw5sqv	174	78	in	in	IN
cord-002728-6oyw5sqv	174	79	gut	gut	NN
cord-002728-6oyw5sqv	174	80	samples	sample	NNS
cord-002728-6oyw5sqv	174	81	from	from	IN
cord-002728-6oyw5sqv	174	82	pediatric	pediatric	JJ
cord-002728-6oyw5sqv	174	83	Crohn	Crohn	NNP
cord-002728-6oyw5sqv	174	84	's	's	POS
cord-002728-6oyw5sqv	174	85	disease	disease	NN
cord-002728-6oyw5sqv	174	86	patients	patient	NNS
cord-002728-6oyw5sqv	174	87	:	:	:
cord-002728-6oyw5sqv	174	88	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	174	89	analysis	analysis	NN
cord-002728-6oyw5sqv	174	90	using	use	VBG
cord-002728-6oyw5sqv	174	91	454	454	CD
cord-002728-6oyw5sqv	174	92	pyrosequencing	pyrosequencing	NNP
cord-002728-6oyw5sqv	174	93	Study	Study	NNP
cord-002728-6oyw5sqv	174	94	of	of	IN
cord-002728-6oyw5sqv	174	95	the	the	DT
cord-002728-6oyw5sqv	174	96	viral	viral	JJ
cord-002728-6oyw5sqv	174	97	and	and	CC
cord-002728-6oyw5sqv	174	98	microbial	microbial	JJ
cord-002728-6oyw5sqv	174	99	communities	community	NNS
cord-002728-6oyw5sqv	174	100	associated	associate	VBN
cord-002728-6oyw5sqv	174	101	with	with	IN
cord-002728-6oyw5sqv	174	102	Crohn	Crohn	NNP
cord-002728-6oyw5sqv	174	103	's	's	POS
cord-002728-6oyw5sqv	174	104	disease	disease	NN
cord-002728-6oyw5sqv	174	105	:	:	:
cord-002728-6oyw5sqv	174	106	a	a	DT
cord-002728-6oyw5sqv	174	107	metagenomic	metagenomic	NN
cord-002728-6oyw5sqv	174	108	approach	approach	NN
cord-002728-6oyw5sqv	174	109	Metagenomic	Metagenomic	NNP
cord-002728-6oyw5sqv	174	110	analysis	analysis	NN
cord-002728-6oyw5sqv	174	111	of	of	IN
cord-002728-6oyw5sqv	174	112	microbiome	microbiome	NN
cord-002728-6oyw5sqv	174	113	in	in	IN
cord-002728-6oyw5sqv	174	114	colon	colon	NN
cord-002728-6oyw5sqv	174	115	tissue	tissue	NN
cord-002728-6oyw5sqv	174	116	from	from	IN
cord-002728-6oyw5sqv	174	117	subjects	subject	NNS
cord-002728-6oyw5sqv	174	118	with	with	IN
cord-002728-6oyw5sqv	174	119	inflammatory	inflammatory	JJ
cord-002728-6oyw5sqv	174	120	bowel	bowel	NN
cord-002728-6oyw5sqv	174	121	diseases	disease	NNS
cord-002728-6oyw5sqv	174	122	reveals	reveal	VBZ
cord-002728-6oyw5sqv	174	123	interplay	interplay	JJ
cord-002728-6oyw5sqv	174	124	of	of	IN
cord-002728-6oyw5sqv	174	125	viruses	virus	NNS
cord-002728-6oyw5sqv	174	126	and	and	CC
cord-002728-6oyw5sqv	174	127	bacteria	bacteria	NNS
cord-002728-6oyw5sqv	174	128	Metagenomic	Metagenomic	NNP
cord-002728-6oyw5sqv	174	129	analysis	analysis	NN
cord-002728-6oyw5sqv	174	130	of	of	IN
cord-002728-6oyw5sqv	174	131	Crohn	Crohn	NNP
cord-002728-6oyw5sqv	174	132	's	's	POS
cord-002728-6oyw5sqv	174	133	disease	disease	NN
cord-002728-6oyw5sqv	174	134	patients	patient	NNS
cord-002728-6oyw5sqv	174	135	identifies	identify	VBZ
cord-002728-6oyw5sqv	174	136	changes	change	NNS
cord-002728-6oyw5sqv	174	137	in	in	IN
cord-002728-6oyw5sqv	174	138	the	the	DT
cord-002728-6oyw5sqv	174	139	virome	virome	NN
cord-002728-6oyw5sqv	174	140	and	and	CC
cord-002728-6oyw5sqv	174	141	microbiome	microbiome	NN
cord-002728-6oyw5sqv	174	142	related	relate	VBN
cord-002728-6oyw5sqv	174	143	to	to	IN
cord-002728-6oyw5sqv	174	144	disease	disease	NN
cord-002728-6oyw5sqv	174	145	status	status	NN
cord-002728-6oyw5sqv	174	146	and	and	CC
cord-002728-6oyw5sqv	174	147	therapy	therapy	NN
cord-002728-6oyw5sqv	174	148	,	,	,
cord-002728-6oyw5sqv	174	149	and	and	CC
cord-002728-6oyw5sqv	174	150	detects	detect	VBZ
cord-002728-6oyw5sqv	174	151	potential	potential	JJ
cord-002728-6oyw5sqv	174	152	interactions	interaction	NNS
cord-002728-6oyw5sqv	174	153	and	and	CC
cord-002728-6oyw5sqv	174	154	biomarkers	biomarker	NNS
cord-002728-6oyw5sqv	175	1	Modular	modular	JJ
cord-002728-6oyw5sqv	175	2	approach	approach	NN
cord-002728-6oyw5sqv	175	3	to	to	TO
cord-002728-6oyw5sqv	175	4	customise	customise	VB
cord-002728-6oyw5sqv	175	5	sample	sample	NN
cord-002728-6oyw5sqv	175	6	preparation	preparation	NN
cord-002728-6oyw5sqv	175	7	procedures	procedure	NNS
cord-002728-6oyw5sqv	175	8	for	for	IN
cord-002728-6oyw5sqv	175	9	viral	viral	JJ
cord-002728-6oyw5sqv	175	10	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	175	11	:	:	:
cord-002728-6oyw5sqv	175	12	a	a	DT
cord-002728-6oyw5sqv	175	13	reproducible	reproducible	JJ
cord-002728-6oyw5sqv	175	14	protocol	protocol	NN
cord-002728-6oyw5sqv	175	15	for	for	IN
cord-002728-6oyw5sqv	175	16	virome	virome	NNP
cord-002728-6oyw5sqv	175	17	analysis	analysis	NN
cord-002728-6oyw5sqv	175	18	Evaluation	Evaluation	NNP
cord-002728-6oyw5sqv	175	19	of	of	IN
cord-002728-6oyw5sqv	175	20	methods	method	NNS
cord-002728-6oyw5sqv	175	21	to	to	TO
cord-002728-6oyw5sqv	175	22	purify	purify	VB
cord-002728-6oyw5sqv	175	23	virus	virus	NN
cord-002728-6oyw5sqv	175	24	-	-	HYPH
cord-002728-6oyw5sqv	175	25	like	like	JJ
cord-002728-6oyw5sqv	175	26	particles	particle	NNS
cord-002728-6oyw5sqv	175	27	for	for	IN
cord-002728-6oyw5sqv	175	28	metagenomic	metagenomic	JJ
cord-002728-6oyw5sqv	175	29	sequencing	sequencing	NN
cord-002728-6oyw5sqv	175	30	of	of	IN
cord-002728-6oyw5sqv	175	31	intestinal	intestinal	JJ
cord-002728-6oyw5sqv	175	32	viromes	virome	NNS
cord-002728-6oyw5sqv	176	1	The	the	DT
cord-002728-6oyw5sqv	176	2	perioperative	perioperative	JJ
cord-002728-6oyw5sqv	176	3	lung	lung	NN
cord-002728-6oyw5sqv	176	4	transplant	transplant	NN
cord-002728-6oyw5sqv	176	5	virome	virome	NNP
cord-002728-6oyw5sqv	176	6	:	:	:
cord-002728-6oyw5sqv	177	1	Torque	Torque	NNP
cord-002728-6oyw5sqv	177	2	teno	teno	NNP
cord-002728-6oyw5sqv	177	3	viruses	virus	NNS
cord-002728-6oyw5sqv	177	4	are	be	VBP
cord-002728-6oyw5sqv	177	5	elevated	elevate	VBN
cord-002728-6oyw5sqv	177	6	in	in	IN
cord-002728-6oyw5sqv	177	7	donor	donor	NN
cord-002728-6oyw5sqv	177	8	lungs	lung	NNS
cord-002728-6oyw5sqv	177	9	and	and	CC
cord-002728-6oyw5sqv	177	10	show	show	VB
cord-002728-6oyw5sqv	177	11	divergent	divergent	JJ
cord-002728-6oyw5sqv	177	12	dynamics	dynamic	NNS
cord-002728-6oyw5sqv	177	13	in	in	IN
cord-002728-6oyw5sqv	177	14	primary	primary	JJ
cord-002728-6oyw5sqv	177	15	graft	graft	NN
cord-002728-6oyw5sqv	177	16	dysfunction	dysfunction	NN
cord-002728-6oyw5sqv	177	17	Reagent	reagent	NN
cord-002728-6oyw5sqv	177	18	and	and	CC
cord-002728-6oyw5sqv	177	19	laboratory	laboratory	NN
cord-002728-6oyw5sqv	177	20	contamination	contamination	NN
cord-002728-6oyw5sqv	177	21	can	can	MD
cord-002728-6oyw5sqv	177	22	critically	critically	RB
cord-002728-6oyw5sqv	177	23	impact	impact	VB
cord-002728-6oyw5sqv	177	24	sequence	sequence	NN
cord-002728-6oyw5sqv	177	25	-	-	HYPH
cord-002728-6oyw5sqv	177	26	based	base	VBN
cord-002728-6oyw5sqv	177	27	microbiome	microbiome	NN
cord-002728-6oyw5sqv	177	28	analyses	analysis	NNS
cord-002728-6oyw5sqv	177	29	Direct	direct	VBP
cord-002728-6oyw5sqv	177	30	multiplexed	multiplexed	JJ
cord-002728-6oyw5sqv	177	31	whole	whole	JJ
cord-002728-6oyw5sqv	177	32	genome	genome	NN
cord-002728-6oyw5sqv	177	33	sequencing	sequencing	NN
cord-002728-6oyw5sqv	177	34	of	of	IN
cord-002728-6oyw5sqv	177	35	respiratory	respiratory	JJ
cord-002728-6oyw5sqv	177	36	tract	tract	NN
cord-002728-6oyw5sqv	177	37	samples	sample	NNS
cord-002728-6oyw5sqv	177	38	reveals	reveal	VBZ
cord-002728-6oyw5sqv	177	39	full	full	JJ
cord-002728-6oyw5sqv	177	40	viral	viral	JJ
cord-002728-6oyw5sqv	177	41	genomic	genomic	JJ
cord-002728-6oyw5sqv	177	42	information	information	NN
cord-002728-6oyw5sqv	177	43	Analysis	Analysis	NNP
cord-002728-6oyw5sqv	177	44	of	of	IN
cord-002728-6oyw5sqv	177	45	the	the	DT
cord-002728-6oyw5sqv	177	46	virus	virus	NN
cord-002728-6oyw5sqv	177	47	population	population	NN
cord-002728-6oyw5sqv	177	48	present	present	JJ
cord-002728-6oyw5sqv	177	49	in	in	IN
cord-002728-6oyw5sqv	177	50	equine	equine	JJ
cord-002728-6oyw5sqv	177	51	faeces	faece	NNS
cord-002728-6oyw5sqv	177	52	indicates	indicate	VBZ
cord-002728-6oyw5sqv	177	53	the	the	DT
cord-002728-6oyw5sqv	177	54	presence	presence	NN
cord-002728-6oyw5sqv	177	55	of	of	IN
cord-002728-6oyw5sqv	177	56	hundreds	hundred	NNS
cord-002728-6oyw5sqv	177	57	of	of	IN
cord-002728-6oyw5sqv	177	58	uncharacterized	uncharacterized	JJ
cord-002728-6oyw5sqv	177	59	virus	virus	NN
cord-002728-6oyw5sqv	177	60	genomes	genome	NNS
cord-002728-6oyw5sqv	177	61	The	the	DT
cord-002728-6oyw5sqv	177	62	marine	marine	JJ
cord-002728-6oyw5sqv	177	63	viromes	virome	NNS
cord-002728-6oyw5sqv	177	64	of	of	IN
cord-002728-6oyw5sqv	177	65	four	four	CD
cord-002728-6oyw5sqv	177	66	oceanic	oceanic	JJ
cord-002728-6oyw5sqv	177	67	regions	region	NNS
cord-002728-6oyw5sqv	177	68	VirFinder	VirFinder	NNP
cord-002728-6oyw5sqv	177	69	:	:	:
cord-002728-6oyw5sqv	177	70	a	a	DT
cord-002728-6oyw5sqv	177	71	novel	novel	JJ
cord-002728-6oyw5sqv	177	72	kmer	kmer	NN
cord-002728-6oyw5sqv	177	73	based	base	VBN
cord-002728-6oyw5sqv	177	74	tool	tool	NN
cord-002728-6oyw5sqv	177	75	for	for	IN
cord-002728-6oyw5sqv	177	76	identifying	identify	VBG
cord-002728-6oyw5sqv	177	77	viral	viral	JJ
cord-002728-6oyw5sqv	177	78	sequences	sequence	NNS
cord-002728-6oyw5sqv	177	79	from	from	IN
cord-002728-6oyw5sqv	177	80	assembled	assemble	VBN
cord-002728-6oyw5sqv	177	81	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	177	82	data	data	NNP
cord-002728-6oyw5sqv	177	83	Alignment	Alignment	NNP
cord-002728-6oyw5sqv	177	84	-	-	HYPH
cord-002728-6oyw5sqv	177	85	free	free	JJ
cord-002728-6oyw5sqv	177	86	d	d	NN
cord-002728-6oyw5sqv	177	87	2	2	CD
cord-002728-6oyw5sqv	178	1	*	*	NFP
cord-002728-6oyw5sqv	178	2	oligonucleotide	oligonucleotide	JJ
cord-002728-6oyw5sqv	178	3	frequency	frequency	NN
cord-002728-6oyw5sqv	178	4	dissimilarity	dissimilarity	NN
cord-002728-6oyw5sqv	178	5	measure	measure	NN
cord-002728-6oyw5sqv	178	6	improves	improve	VBZ
cord-002728-6oyw5sqv	178	7	prediction	prediction	NN
cord-002728-6oyw5sqv	178	8	of	of	IN
cord-002728-6oyw5sqv	178	9	hosts	host	NNS
cord-002728-6oyw5sqv	178	10	from	from	IN
cord-002728-6oyw5sqv	178	11	metagenomically	metagenomically	RB
cord-002728-6oyw5sqv	178	12	-	-	HYPH
cord-002728-6oyw5sqv	178	13	derived	derive	VBN
cord-002728-6oyw5sqv	178	14	viral	viral	JJ
cord-002728-6oyw5sqv	178	15	sequences	sequence	NNS
cord-002728-6oyw5sqv	179	1	A	a	DT
cord-002728-6oyw5sqv	179	2	roadmap	roadmap	NN
cord-002728-6oyw5sqv	179	3	to	to	IN
cord-002728-6oyw5sqv	179	4	the	the	DT
cord-002728-6oyw5sqv	179	5	human	human	JJ
cord-002728-6oyw5sqv	179	6	virome	virome	NNP
cord-002728-6oyw5sqv	179	7	Human	Human	NNP
cord-002728-6oyw5sqv	179	8	viruses	virus	NNS
cord-002728-6oyw5sqv	179	9	:	:	:
cord-002728-6oyw5sqv	179	10	discovery	discovery	NN
cord-002728-6oyw5sqv	179	11	and	and	CC
cord-002728-6oyw5sqv	179	12	emergence	emergence	NN
cord-002728-6oyw5sqv	179	13	Prophage	Prophage	NNP
cord-002728-6oyw5sqv	179	14	-	-	HYPH
cord-002728-6oyw5sqv	179	15	like	like	JJ
cord-002728-6oyw5sqv	180	1	gene	gene	NN
cord-002728-6oyw5sqv	180	2	transfer	transfer	NN
cord-002728-6oyw5sqv	180	3	agents	agent	NNS
cord-002728-6oyw5sqv	180	4	-	-	HYPH
cord-002728-6oyw5sqv	180	5	novel	novel	NN
cord-002728-6oyw5sqv	180	6	mechanisms	mechanism	NNS
cord-002728-6oyw5sqv	180	7	of	of	IN
cord-002728-6oyw5sqv	180	8	gene	gene	NN
cord-002728-6oyw5sqv	180	9	exchange	exchange	NN
cord-002728-6oyw5sqv	180	10	for	for	IN
cord-002728-6oyw5sqv	180	11	Methanococcus	Methanococcus	NNP
cord-002728-6oyw5sqv	180	12	,	,	,
cord-002728-6oyw5sqv	180	13	Desulfovibrio	Desulfovibrio	NNP
cord-002728-6oyw5sqv	180	14	,	,	,
cord-002728-6oyw5sqv	180	15	Brachyspira	Brachyspira	NNP
cord-002728-6oyw5sqv	180	16	,	,	,
cord-002728-6oyw5sqv	180	17	and	and	CC
cord-002728-6oyw5sqv	180	18	Rhodobacter	Rhodobacter	NNP
cord-002728-6oyw5sqv	180	19	species	specie	NNS
cord-002728-6oyw5sqv	180	20	Transfer	transfer	NN
cord-002728-6oyw5sqv	180	21	of	of	IN
cord-002728-6oyw5sqv	180	22	antibiotic	antibiotic	JJ
cord-002728-6oyw5sqv	180	23	-	-	HYPH
cord-002728-6oyw5sqv	180	24	resistance	resistance	NN
cord-002728-6oyw5sqv	180	25	genes	gene	NNS
cord-002728-6oyw5sqv	180	26	via	via	IN
cord-002728-6oyw5sqv	180	27	phage	phage	NN
cord-002728-6oyw5sqv	180	28	-	-	HYPH
cord-002728-6oyw5sqv	180	29	related	relate	VBN
cord-002728-6oyw5sqv	180	30	mobile	mobile	JJ
cord-002728-6oyw5sqv	180	31	elements	element	NNS
cord-002728-6oyw5sqv	180	32	Exosome	Exosome	NNP
cord-002728-6oyw5sqv	180	33	can	can	MD
cord-002728-6oyw5sqv	180	34	prevent	prevent	VB
cord-002728-6oyw5sqv	180	35	RNase	rnase	NN
cord-002728-6oyw5sqv	180	36	from	from	IN
cord-002728-6oyw5sqv	180	37	degrading	degrade	VBG
cord-002728-6oyw5sqv	180	38	microRNA	microRNA	NNP
cord-002728-6oyw5sqv	180	39	in	in	IN
cord-002728-6oyw5sqv	180	40	feces	fece	NNS
cord-002728-6oyw5sqv	181	1	Q&A	Q&A	NNP
cord-002728-6oyw5sqv	181	2	:	:	:
cord-002728-6oyw5sqv	182	1	What	what	WP
cord-002728-6oyw5sqv	182	2	are	be	VBP
cord-002728-6oyw5sqv	182	3	exosomes	exosome	NNS
cord-002728-6oyw5sqv	182	4	,	,	,
cord-002728-6oyw5sqv	182	5	exactly	exactly	RB
cord-002728-6oyw5sqv	182	6	?	?	.
cord-002728-6oyw5sqv	183	1	Membrane	membrane	NN
cord-002728-6oyw5sqv	183	2	vesiclemediated	vesiclemediated	JJ
cord-002728-6oyw5sqv	183	3	release	release	NN
cord-002728-6oyw5sqv	183	4	of	of	IN
cord-002728-6oyw5sqv	183	5	bacterial	bacterial	JJ
cord-002728-6oyw5sqv	183	6	Klebsiella	Klebsiella	NNP
cord-002728-6oyw5sqv	183	7	pneumoniae	pneumoniae	NN
cord-002728-6oyw5sqv	183	8	subsp	subsp	NN
cord-002728-6oyw5sqv	183	9	.	.	.
cord-002728-6oyw5sqv	184	1	pneumoniae	pneumoniae	NN
cord-002728-6oyw5sqv	184	2	-	-	HYPH
cord-002728-6oyw5sqv	184	3	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	184	4	combination	combination	NN
cord-002728-6oyw5sqv	184	5	from	from	IN
cord-002728-6oyw5sqv	184	6	the	the	DT
cord-002728-6oyw5sqv	184	7	caecal	caecal	JJ
cord-002728-6oyw5sqv	184	8	effluent	effluent	NN
cord-002728-6oyw5sqv	184	9	of	of	IN
cord-002728-6oyw5sqv	184	10	a	a	DT
cord-002728-6oyw5sqv	184	11	healthy	healthy	JJ
cord-002728-6oyw5sqv	184	12	woman	woman	NN
cord-002728-6oyw5sqv	185	1	Phage	phage	NN
cord-002728-6oyw5sqv	185	2	tail	tail	NN
cord-002728-6oyw5sqv	185	3	-	-	HYPH
cord-002728-6oyw5sqv	185	4	like	like	JJ
cord-002728-6oyw5sqv	185	5	particles	particle	NNS
cord-002728-6oyw5sqv	185	6	kill	kill	VBP
cord-002728-6oyw5sqv	185	7	Clostridium	clostridium	NN
cord-002728-6oyw5sqv	185	8	difficile	difficile	NN
cord-002728-6oyw5sqv	185	9	and	and	CC
cord-002728-6oyw5sqv	185	10	represent	represent	VB
cord-002728-6oyw5sqv	185	11	an	an	DT
cord-002728-6oyw5sqv	185	12	alternative	alternative	NN
cord-002728-6oyw5sqv	185	13	to	to	IN
cord-002728-6oyw5sqv	185	14	conventional	conventional	JJ
cord-002728-6oyw5sqv	185	15	antibiotics	antibiotic	NNS
cord-002728-6oyw5sqv	185	16	Three	three	CD
cord-002728-6oyw5sqv	185	17	new	new	JJ
cord-002728-6oyw5sqv	185	18	Escherichia	Escherichia	NNP
cord-002728-6oyw5sqv	185	19	coli	coli	NNS
cord-002728-6oyw5sqv	185	20	phages	phage	NNS
cord-002728-6oyw5sqv	185	21	from	from	IN
cord-002728-6oyw5sqv	185	22	the	the	DT
cord-002728-6oyw5sqv	185	23	human	human	JJ
cord-002728-6oyw5sqv	185	24	gut	gut	NN
cord-002728-6oyw5sqv	185	25	show	show	NN
cord-002728-6oyw5sqv	185	26	promising	promise	VBG
cord-002728-6oyw5sqv	185	27	potential	potential	NN
cord-002728-6oyw5sqv	185	28	for	for	IN
cord-002728-6oyw5sqv	185	29	phage	phage	NN
cord-002728-6oyw5sqv	185	30	therapy	therapy	NN
cord-002728-6oyw5sqv	185	31	Lytic	lytic	JJ
cord-002728-6oyw5sqv	185	32	bacteriophage	bacteriophage	NN
cord-002728-6oyw5sqv	185	33	PM16	PM16	NNP
cord-002728-6oyw5sqv	185	34	specific	specific	JJ
cord-002728-6oyw5sqv	185	35	for	for	IN
cord-002728-6oyw5sqv	185	36	Proteus	Proteus	NNP
cord-002728-6oyw5sqv	185	37	mirabilis	mirabilis	NNP
cord-002728-6oyw5sqv	185	38	:	:	:
cord-002728-6oyw5sqv	185	39	a	a	DT
cord-002728-6oyw5sqv	185	40	novel	novel	JJ
cord-002728-6oyw5sqv	185	41	member	member	NN
cord-002728-6oyw5sqv	185	42	of	of	IN
cord-002728-6oyw5sqv	185	43	the	the	DT
cord-002728-6oyw5sqv	185	44	genus	genus	NN
cord-002728-6oyw5sqv	185	45	Phikmvvirus	Phikmvvirus	NNP
cord-002728-6oyw5sqv	185	46	Full	Full	NNP
cord-002728-6oyw5sqv	185	47	genome	genome	NN
cord-002728-6oyw5sqv	185	48	virus	virus	NN
cord-002728-6oyw5sqv	185	49	detection	detection	NN
cord-002728-6oyw5sqv	185	50	in	in	IN
cord-002728-6oyw5sqv	185	51	fecal	fecal	JJ
cord-002728-6oyw5sqv	185	52	samples	sample	NNS
cord-002728-6oyw5sqv	185	53	using	use	VBG
cord-002728-6oyw5sqv	185	54	sensitive	sensitive	JJ
cord-002728-6oyw5sqv	185	55	nucleic	nucleic	JJ
cord-002728-6oyw5sqv	185	56	acid	acid	NN
cord-002728-6oyw5sqv	185	57	preparation	preparation	NN
cord-002728-6oyw5sqv	185	58	,	,	,
cord-002728-6oyw5sqv	185	59	deep	deep	JJ
cord-002728-6oyw5sqv	185	60	sequencing	sequencing	NN
cord-002728-6oyw5sqv	185	61	,	,	,
cord-002728-6oyw5sqv	185	62	and	and	CC
cord-002728-6oyw5sqv	185	63	a	a	DT
cord-002728-6oyw5sqv	185	64	novel	novel	JJ
cord-002728-6oyw5sqv	185	65	iterative	iterative	JJ
cord-002728-6oyw5sqv	185	66	sequence	sequence	NN
cord-002728-6oyw5sqv	185	67	classification	classification	NN
cord-002728-6oyw5sqv	185	68	algorithm	algorithm	NN
cord-002728-6oyw5sqv	185	69	Direct	direct	JJ
cord-002728-6oyw5sqv	185	70	sequencing	sequencing	NN
cord-002728-6oyw5sqv	185	71	of	of	IN
cord-002728-6oyw5sqv	185	72	human	human	JJ
cord-002728-6oyw5sqv	185	73	gut	gut	NN
cord-002728-6oyw5sqv	185	74	virome	virome	NNP
cord-002728-6oyw5sqv	185	75	fractions	fraction	NNS
cord-002728-6oyw5sqv	185	76	obtained	obtain	VBN
cord-002728-6oyw5sqv	185	77	by	by	IN
cord-002728-6oyw5sqv	185	78	flow	flow	NN
cord-002728-6oyw5sqv	185	79	cytometry	cytometry	NN
cord-002728-6oyw5sqv	186	1	Comparing	compare	VBG
cord-002728-6oyw5sqv	186	2	viral	viral	JJ
cord-002728-6oyw5sqv	186	3	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	186	4	methods	method	NNS
cord-002728-6oyw5sqv	186	5	using	use	VBG
cord-002728-6oyw5sqv	186	6	a	a	DT
cord-002728-6oyw5sqv	186	7	highly	highly	RB
cord-002728-6oyw5sqv	186	8	multiplexed	multiplexe	VBN
cord-002728-6oyw5sqv	186	9	human	human	JJ
cord-002728-6oyw5sqv	186	10	viral	viral	JJ
cord-002728-6oyw5sqv	186	11	pathogens	pathogen	NNS
cord-002728-6oyw5sqv	186	12	reagent	reagent	JJ
cord-002728-6oyw5sqv	186	13	PHACCS	PHACCS	NNP
cord-002728-6oyw5sqv	186	14	,	,	,
cord-002728-6oyw5sqv	186	15	an	an	DT
cord-002728-6oyw5sqv	186	16	online	online	JJ
cord-002728-6oyw5sqv	186	17	tool	tool	NN
cord-002728-6oyw5sqv	186	18	for	for	IN
cord-002728-6oyw5sqv	186	19	estimating	estimate	VBG
cord-002728-6oyw5sqv	186	20	the	the	DT
cord-002728-6oyw5sqv	186	21	structure	structure	NN
cord-002728-6oyw5sqv	186	22	and	and	CC
cord-002728-6oyw5sqv	186	23	diversity	diversity	NN
cord-002728-6oyw5sqv	186	24	of	of	IN
cord-002728-6oyw5sqv	186	25	uncultured	uncultured	JJ
cord-002728-6oyw5sqv	186	26	viral	viral	JJ
cord-002728-6oyw5sqv	186	27	communities	community	NNS
cord-002728-6oyw5sqv	186	28	using	use	VBG
cord-002728-6oyw5sqv	186	29	metagenomic	metagenomic	JJ
cord-002728-6oyw5sqv	186	30	information	information	NN
cord-002728-6oyw5sqv	186	31	ACLAME	ACLAME	NNP
cord-002728-6oyw5sqv	186	32	:	:	:
cord-002728-6oyw5sqv	187	1	a	a	DT
cord-002728-6oyw5sqv	187	2	CLAssification	classification	NN
cord-002728-6oyw5sqv	187	3	of	of	IN
cord-002728-6oyw5sqv	187	4	Mobile	mobile	JJ
cord-002728-6oyw5sqv	187	5	genetic	genetic	JJ
cord-002728-6oyw5sqv	187	6	Elements	Elements	NNP
cord-002728-6oyw5sqv	187	7	,	,	,
cord-002728-6oyw5sqv	187	8	update	update	NN
cord-002728-6oyw5sqv	187	9	2010	2010	CD
cord-002728-6oyw5sqv	187	10	Metavir	Metavir	NNP
cord-002728-6oyw5sqv	187	11	:	:	:
cord-002728-6oyw5sqv	187	12	a	a	DT
cord-002728-6oyw5sqv	187	13	web	web	NN
cord-002728-6oyw5sqv	187	14	server	server	NN
cord-002728-6oyw5sqv	187	15	dedicated	dedicate	VBN
cord-002728-6oyw5sqv	187	16	to	to	IN
cord-002728-6oyw5sqv	187	17	virome	virome	NNP
cord-002728-6oyw5sqv	187	18	analysis	analysis	NN
cord-002728-6oyw5sqv	188	1	Metavir	Metavir	NNP
cord-002728-6oyw5sqv	188	2	2	2	CD
cord-002728-6oyw5sqv	188	3	:	:	:
cord-002728-6oyw5sqv	188	4	new	new	JJ
cord-002728-6oyw5sqv	188	5	tools	tool	NNS
cord-002728-6oyw5sqv	188	6	for	for	IN
cord-002728-6oyw5sqv	188	7	viral	viral	JJ
cord-002728-6oyw5sqv	188	8	metagenome	metagenome	NN
cord-002728-6oyw5sqv	188	9	comparison	comparison	NN
cord-002728-6oyw5sqv	188	10	and	and	CC
cord-002728-6oyw5sqv	188	11	assembled	assemble	VBD
cord-002728-6oyw5sqv	188	12	virome	virome	JJ
cord-002728-6oyw5sqv	188	13	analysis	analysis	NN
cord-002728-6oyw5sqv	188	14	VIROME	VIROME	NNP
cord-002728-6oyw5sqv	188	15	:	:	:
cord-002728-6oyw5sqv	188	16	a	a	DT
cord-002728-6oyw5sqv	188	17	standard	standard	JJ
cord-002728-6oyw5sqv	188	18	operating	operating	NN
cord-002728-6oyw5sqv	188	19	procedure	procedure	NN
cord-002728-6oyw5sqv	188	20	for	for	IN
cord-002728-6oyw5sqv	188	21	analysis	analysis	NN
cord-002728-6oyw5sqv	188	22	of	of	IN
cord-002728-6oyw5sqv	188	23	viral	viral	JJ
cord-002728-6oyw5sqv	188	24	metagenome	metagenome	NN
cord-002728-6oyw5sqv	188	25	sequences	sequence	NNS
cord-002728-6oyw5sqv	188	26	Molecular	molecular	JJ
cord-002728-6oyw5sqv	188	27	methods	method	NNS
cord-002728-6oyw5sqv	188	28	of	of	IN
cord-002728-6oyw5sqv	188	29	virus	virus	NN
cord-002728-6oyw5sqv	188	30	detection	detection	NN
cord-002728-6oyw5sqv	188	31	in	in	IN
cord-002728-6oyw5sqv	188	32	lymphoma	lymphoma	NN
cord-002728-6oyw5sqv	188	33	VirSorter	VirSorter	NNP
cord-002728-6oyw5sqv	188	34	:	:	:
cord-002728-6oyw5sqv	189	1	mining	mining	NN
cord-002728-6oyw5sqv	189	2	viral	viral	JJ
cord-002728-6oyw5sqv	189	3	signal	signal	NN
cord-002728-6oyw5sqv	189	4	from	from	IN
cord-002728-6oyw5sqv	189	5	microbial	microbial	JJ
cord-002728-6oyw5sqv	189	6	genomic	genomic	JJ
cord-002728-6oyw5sqv	189	7	data	datum	NNS
cord-002728-6oyw5sqv	189	8	ViromeScan	ViromeScan	NNP
cord-002728-6oyw5sqv	189	9	:	:	:
cord-002728-6oyw5sqv	189	10	a	a	DT
cord-002728-6oyw5sqv	189	11	new	new	JJ
cord-002728-6oyw5sqv	189	12	tool	tool	NN
cord-002728-6oyw5sqv	189	13	for	for	IN
cord-002728-6oyw5sqv	189	14	metagenomic	metagenomic	NNP
cord-002728-6oyw5sqv	189	15	viral	viral	JJ
cord-002728-6oyw5sqv	189	16	community	community	NN
cord-002728-6oyw5sqv	189	17	profiling	profile	VBG
cord-002728-6oyw5sqv	189	18	VIP	vip	NN
cord-002728-6oyw5sqv	189	19	:	:	:
cord-002728-6oyw5sqv	189	20	an	an	DT
cord-002728-6oyw5sqv	189	21	integrated	integrated	JJ
cord-002728-6oyw5sqv	189	22	pipeline	pipeline	NN
cord-002728-6oyw5sqv	189	23	for	for	IN
cord-002728-6oyw5sqv	189	24	metagenomics	metagenomic	NNS
cord-002728-6oyw5sqv	189	25	of	of	IN
cord-002728-6oyw5sqv	189	26	virus	virus	NN
cord-002728-6oyw5sqv	189	27	identification	identification	NN
cord-002728-6oyw5sqv	189	28	and	and	CC
cord-002728-6oyw5sqv	189	29	discovery	discovery	NN
cord-002728-6oyw5sqv	189	30	VirusDetect	VirusDetect	NNP
cord-002728-6oyw5sqv	189	31	:	:	:
cord-002728-6oyw5sqv	189	32	An	an	DT
cord-002728-6oyw5sqv	189	33	automated	automated	JJ
cord-002728-6oyw5sqv	189	34	pipeline	pipeline	NN
cord-002728-6oyw5sqv	189	35	for	for	IN
cord-002728-6oyw5sqv	189	36	efficient	efficient	JJ
cord-002728-6oyw5sqv	189	37	virus	virus	NN
cord-002728-6oyw5sqv	189	38	discovery	discovery	NN
cord-002728-6oyw5sqv	189	39	using	use	VBG
cord-002728-6oyw5sqv	189	40	deep	deep	JJ
cord-002728-6oyw5sqv	189	41	sequencing	sequencing	NN
cord-002728-6oyw5sqv	189	42	of	of	IN
cord-002728-6oyw5sqv	189	43	small	small	JJ
cord-002728-6oyw5sqv	189	44	RNAs	rna	NNS
cord-002728-6oyw5sqv	189	45	PHASTER	PHASTER	NNP
cord-002728-6oyw5sqv	189	46	:	:	:
cord-002728-6oyw5sqv	189	47	a	a	DT
cord-002728-6oyw5sqv	189	48	better	well	JJR
cord-002728-6oyw5sqv	189	49	,	,	,
cord-002728-6oyw5sqv	189	50	faster	fast	JJR
cord-002728-6oyw5sqv	189	51	version	version	NN
cord-002728-6oyw5sqv	189	52	of	of	IN
cord-002728-6oyw5sqv	189	53	the	the	DT
cord-002728-6oyw5sqv	189	54	PHAST	PHAST	NNP
cord-002728-6oyw5sqv	189	55	phage	phage	NN
cord-002728-6oyw5sqv	189	56	search	search	NN
cord-002728-6oyw5sqv	189	57	tool	tool	NN
cord-002728-6oyw5sqv	189	58	VirusSeeker	VirusSeeker	NNP
cord-002728-6oyw5sqv	189	59	,	,	,
cord-002728-6oyw5sqv	189	60	a	a	DT
cord-002728-6oyw5sqv	189	61	computational	computational	JJ
cord-002728-6oyw5sqv	189	62	pipeline	pipeline	NN
cord-002728-6oyw5sqv	189	63	for	for	IN
cord-002728-6oyw5sqv	189	64	virus	virus	NN
cord-002728-6oyw5sqv	189	65	discovery	discovery	NN
cord-002728-6oyw5sqv	189	66	and	and	CC
cord-002728-6oyw5sqv	190	1	virome	virome	NNP
cord-002728-6oyw5sqv	190	2	composition	composition	NN
cord-002728-6oyw5sqv	190	3	analysis	analysis	NN
cord-002728-6oyw5sqv	191	1	Defining	define	VBG
cord-002728-6oyw5sqv	191	2	dysbiosis	dysbiosis	NN
cord-002728-6oyw5sqv	191	3	and	and	CC
cord-002728-6oyw5sqv	191	4	its	-PRON-	PRP$
cord-002728-6oyw5sqv	191	5	influence	influence	NN
cord-002728-6oyw5sqv	191	6	on	on	IN
cord-002728-6oyw5sqv	191	7	host	host	NN
cord-002728-6oyw5sqv	191	8	immunity	immunity	NN
cord-002728-6oyw5sqv	191	9	and	and	CC
cord-002728-6oyw5sqv	191	10	disease	disease	NN
cord-002728-6oyw5sqv	191	11	Dysbiosis	Dysbiosis	NNP
cord-002728-6oyw5sqv	191	12	in	in	IN
cord-002728-6oyw5sqv	191	13	inflammatory	inflammatory	JJ
cord-002728-6oyw5sqv	191	14	bowel	bowel	NN
cord-002728-6oyw5sqv	191	15	disease	disease	NN
cord-002728-6oyw5sqv	191	16	Microbiota	Microbiota	NNP
cord-002728-6oyw5sqv	191	17	and	and	CC
cord-002728-6oyw5sqv	191	18	neurological	neurological	JJ
cord-002728-6oyw5sqv	191	19	disorders	disorder	NNS
cord-002728-6oyw5sqv	191	20	:	:	:
cord-002728-6oyw5sqv	191	21	a	a	DT
cord-002728-6oyw5sqv	191	22	gut	gut	NN
cord-002728-6oyw5sqv	191	23	feeling	feeling	NN