id author title date pages extension mime words sentences flesch summary cache txt cord-292699-855am0mv Engbert, Ralf Sequential data assimilation of the stochastic SEIR epidemic model for regional COVID-19 dynamics 2020-04-17 .txt text/plain 5369 363 54 The key motivation of the current study was to apply sequential data assimilation of the stochastic SEIR model to estimate the contact parameter. An approximative instantaneous negative log-likelihood L(t k , β) of the contact parameter β at observation time t k is obtained from the ensemble Kalman filter (see Model inference based on sequential data assimilation). Forward iteration with the estimated time-varying contact parameter show that the slope of the epidemic curve is approximately reproduced by the model (Fig. 3a ,c; grey lines indicate the ensemble of simulated trajectories; blue points are observed data). In scenario I, we started with the adapted ensemble of internal model states after data assimilation (April 4th) and iterated the model forward with the mean contact parameter estimated in the week March 29th to April 4th after implementation of interventions (Fig. 4 , green area). ./cache/cord-292699-855am0mv.txt ./txt/cord-292699-855am0mv.txt