id	sid	tid	token	lemma	pos
cord-345211-4ivqlsgt	1	1	key	key	NN
cord-345211-4ivqlsgt	1	2	:	:	:
cord-345211-4ivqlsgt	2	1	cord-345211	cord-345211	NNP
cord-345211-4ivqlsgt	2	2	-	-	:
cord-345211-4ivqlsgt	2	3	4ivqlsgt	4ivqlsgt	CD
cord-345211-4ivqlsgt	2	4	authors	author	NNS
cord-345211-4ivqlsgt	2	5	:	:	:
cord-345211-4ivqlsgt	2	6	Murdoch	Murdoch	NNP
cord-345211-4ivqlsgt	2	7	,	,	,
cord-345211-4ivqlsgt	2	8	David	David	NNP
cord-345211-4ivqlsgt	2	9	R.	R.	NNP
cord-345211-4ivqlsgt	2	10	title	title	NN
cord-345211-4ivqlsgt	2	11	:	:	:
cord-345211-4ivqlsgt	2	12	How	how	WRB
cord-345211-4ivqlsgt	2	13	recent	recent	JJ
cord-345211-4ivqlsgt	2	14	advances	advance	NNS
cord-345211-4ivqlsgt	2	15	in	in	IN
cord-345211-4ivqlsgt	2	16	molecular	molecular	JJ
cord-345211-4ivqlsgt	2	17	tests	test	NNS
cord-345211-4ivqlsgt	2	18	could	could	MD
cord-345211-4ivqlsgt	2	19	impact	impact	VB
cord-345211-4ivqlsgt	2	20	the	the	DT
cord-345211-4ivqlsgt	2	21	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	2	22	of	of	IN
cord-345211-4ivqlsgt	2	23	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	2	24	date	date	NN
cord-345211-4ivqlsgt	2	25	:	:	:
cord-345211-4ivqlsgt	2	26	2016	2016	CD
cord-345211-4ivqlsgt	2	27	-	-	HYPH
cord-345211-4ivqlsgt	2	28	03	03	CD
cord-345211-4ivqlsgt	2	29	-	-	HYPH
cord-345211-4ivqlsgt	2	30	07	07	CD
cord-345211-4ivqlsgt	2	31	journal	journal	NN
cord-345211-4ivqlsgt	2	32	:	:	:
cord-345211-4ivqlsgt	3	1	Expert	Expert	NNP
cord-345211-4ivqlsgt	3	2	Rev	Rev	NNP
cord-345211-4ivqlsgt	3	3	Mol	Mol	NNP
cord-345211-4ivqlsgt	3	4	Diagn	Diagn	NNP
cord-345211-4ivqlsgt	3	5	DOI	doi	NN
cord-345211-4ivqlsgt	3	6	:	:	:
cord-345211-4ivqlsgt	4	1	10.1586/14737159.2016.1156536	10.1586/14737159.2016.1156536	NNP
cord-345211-4ivqlsgt	4	2	sha	sha	NNP
cord-345211-4ivqlsgt	4	3	:	:	:
cord-345211-4ivqlsgt	5	1	9775b80a0f13a6b29c78338b26f40316bec7b71f	9775b80a0f13a6b29c78338b26f40316bec7b71f	NNP
cord-345211-4ivqlsgt	5	2	doc_id	doc_id	CD
cord-345211-4ivqlsgt	6	1	:	:	:
cord-345211-4ivqlsgt	6	2	345211	345211	CD
cord-345211-4ivqlsgt	6	3	cord_uid	cord_uid	NN
cord-345211-4ivqlsgt	6	4	:	:	:
cord-345211-4ivqlsgt	7	1	4ivqlsgt	4ivqlsgt	LS
cord-345211-4ivqlsgt	7	2	Molecular	molecular	JJ
cord-345211-4ivqlsgt	7	3	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	7	4	tests	test	NNS
cord-345211-4ivqlsgt	7	5	have	have	VBP
cord-345211-4ivqlsgt	7	6	been	be	VBN
cord-345211-4ivqlsgt	7	7	the	the	DT
cord-345211-4ivqlsgt	7	8	single	single	JJ
cord-345211-4ivqlsgt	7	9	major	major	JJ
cord-345211-4ivqlsgt	7	10	development	development	NN
cord-345211-4ivqlsgt	7	11	in	in	IN
cord-345211-4ivqlsgt	7	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	7	13	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	7	14	over	over	IN
cord-345211-4ivqlsgt	7	15	recent	recent	JJ
cord-345211-4ivqlsgt	7	16	years	year	NNS
cord-345211-4ivqlsgt	7	17	.	.	.
cord-345211-4ivqlsgt	8	1	Nucleic	nucleic	JJ
cord-345211-4ivqlsgt	8	2	acid	acid	NN
cord-345211-4ivqlsgt	8	3	detection	detection	NN
cord-345211-4ivqlsgt	8	4	tests	test	NNS
cord-345211-4ivqlsgt	8	5	(	(	-LRB-
cord-345211-4ivqlsgt	8	6	NATs	NATs	NNP
cord-345211-4ivqlsgt	8	7	)	)	-RRB-
cord-345211-4ivqlsgt	8	8	have	have	VBP
cord-345211-4ivqlsgt	8	9	greatly	greatly	RB
cord-345211-4ivqlsgt	8	10	improved	improve	VBN
cord-345211-4ivqlsgt	8	11	the	the	DT
cord-345211-4ivqlsgt	8	12	ability	ability	NN
cord-345211-4ivqlsgt	8	13	to	to	TO
cord-345211-4ivqlsgt	8	14	detect	detect	VB
cord-345211-4ivqlsgt	8	15	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	8	16	viruses	virus	NNS
cord-345211-4ivqlsgt	8	17	and	and	CC
cord-345211-4ivqlsgt	8	18	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	8	19	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	8	20	that	that	WDT
cord-345211-4ivqlsgt	8	21	do	do	VBP
cord-345211-4ivqlsgt	8	22	not	not	RB
cord-345211-4ivqlsgt	8	23	normally	normally	RB
cord-345211-4ivqlsgt	8	24	colonize	colonize	VB
cord-345211-4ivqlsgt	8	25	the	the	DT
cord-345211-4ivqlsgt	8	26	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	8	27	tract	tract	NN
cord-345211-4ivqlsgt	8	28	.	.	.
cord-345211-4ivqlsgt	9	1	In	in	IN
cord-345211-4ivqlsgt	9	2	contrast	contrast	NN
cord-345211-4ivqlsgt	9	3	,	,	,
cord-345211-4ivqlsgt	9	4	NATs	NATs	NNP
cord-345211-4ivqlsgt	9	5	do	do	VBP
cord-345211-4ivqlsgt	9	6	not	not	RB
cord-345211-4ivqlsgt	9	7	yet	yet	RB
cord-345211-4ivqlsgt	9	8	have	have	VB
cord-345211-4ivqlsgt	9	9	an	an	DT
cord-345211-4ivqlsgt	9	10	established	establish	VBN
cord-345211-4ivqlsgt	9	11	role	role	NN
cord-345211-4ivqlsgt	9	12	for	for	IN
cord-345211-4ivqlsgt	9	13	diagnosing	diagnose	VBG
cord-345211-4ivqlsgt	9	14	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	9	15	caused	cause	VBN
cord-345211-4ivqlsgt	9	16	by	by	IN
cord-345211-4ivqlsgt	9	17	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	9	18	that	that	WDT
cord-345211-4ivqlsgt	9	19	commonly	commonly	RB
cord-345211-4ivqlsgt	9	20	colonize	colonize	VBP
cord-345211-4ivqlsgt	9	21	the	the	DT
cord-345211-4ivqlsgt	9	22	nasopharynx	nasopharynx	NN
cord-345211-4ivqlsgt	9	23	due	due	JJ
cord-345211-4ivqlsgt	9	24	to	to	IN
cord-345211-4ivqlsgt	9	25	difficulties	difficulty	NNS
cord-345211-4ivqlsgt	9	26	discriminating	discriminate	VBG
cord-345211-4ivqlsgt	9	27	between	between	IN
cord-345211-4ivqlsgt	9	28	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	9	29	and	and	CC
cord-345211-4ivqlsgt	9	30	coincidental	coincidental	JJ
cord-345211-4ivqlsgt	9	31	carriage	carriage	NN
cord-345211-4ivqlsgt	9	32	strains	strain	NNS
cord-345211-4ivqlsgt	9	33	.	.	.
cord-345211-4ivqlsgt	10	1	New	new	JJ
cord-345211-4ivqlsgt	10	2	approaches	approach	NNS
cord-345211-4ivqlsgt	10	3	are	be	VBP
cord-345211-4ivqlsgt	10	4	needed	need	VBN
cord-345211-4ivqlsgt	10	5	to	to	TO
cord-345211-4ivqlsgt	10	6	distinguish	distinguish	VB
cord-345211-4ivqlsgt	10	7	infection	infection	NN
cord-345211-4ivqlsgt	10	8	from	from	IN
cord-345211-4ivqlsgt	10	9	colonization	colonization	NN
cord-345211-4ivqlsgt	10	10	,	,	,
cord-345211-4ivqlsgt	10	11	such	such	JJ
cord-345211-4ivqlsgt	10	12	as	as	IN
cord-345211-4ivqlsgt	10	13	through	through	IN
cord-345211-4ivqlsgt	10	14	use	use	NN
cord-345211-4ivqlsgt	10	15	of	of	IN
cord-345211-4ivqlsgt	10	16	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	10	17	methods	method	NNS
cord-345211-4ivqlsgt	10	18	and	and	CC
cord-345211-4ivqlsgt	10	19	identification	identification	NN
cord-345211-4ivqlsgt	10	20	of	of	IN
cord-345211-4ivqlsgt	10	21	discriminating	discriminate	VBG
cord-345211-4ivqlsgt	10	22	cut	cut	VB
cord-345211-4ivqlsgt	10	23	-	-	HYPH
cord-345211-4ivqlsgt	10	24	off	off	RP
cord-345211-4ivqlsgt	10	25	levels	level	NNS
cord-345211-4ivqlsgt	10	26	.	.	.
cord-345211-4ivqlsgt	11	1	The	the	DT
cord-345211-4ivqlsgt	11	2	recent	recent	JJ
cord-345211-4ivqlsgt	11	3	realization	realization	NN
cord-345211-4ivqlsgt	11	4	that	that	IN
cord-345211-4ivqlsgt	11	5	the	the	DT
cord-345211-4ivqlsgt	11	6	lung	lung	NN
cord-345211-4ivqlsgt	11	7	microbiome	microbiome	NN
cord-345211-4ivqlsgt	11	8	exists	exist	VBZ
cord-345211-4ivqlsgt	11	9	has	have	VBZ
cord-345211-4ivqlsgt	11	10	provided	provide	VBN
cord-345211-4ivqlsgt	11	11	new	new	JJ
cord-345211-4ivqlsgt	11	12	insights	insight	NNS
cord-345211-4ivqlsgt	11	13	into	into	IN
cord-345211-4ivqlsgt	11	14	the	the	DT
cord-345211-4ivqlsgt	11	15	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	11	16	of	of	IN
cord-345211-4ivqlsgt	11	17	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	11	18	involving	involve	VBG
cord-345211-4ivqlsgt	11	19	the	the	DT
cord-345211-4ivqlsgt	11	20	interaction	interaction	NN
cord-345211-4ivqlsgt	11	21	between	between	IN
cord-345211-4ivqlsgt	11	22	multiple	multiple	JJ
cord-345211-4ivqlsgt	11	23	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	11	24	.	.	.
cord-345211-4ivqlsgt	12	1	New	new	JJ
cord-345211-4ivqlsgt	12	2	developments	development	NNS
cord-345211-4ivqlsgt	12	3	in	in	IN
cord-345211-4ivqlsgt	12	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	12	5	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	12	6	must	must	MD
cord-345211-4ivqlsgt	12	7	account	account	VB
cord-345211-4ivqlsgt	12	8	for	for	IN
cord-345211-4ivqlsgt	12	9	this	this	DT
cord-345211-4ivqlsgt	12	10	new	new	JJ
cord-345211-4ivqlsgt	12	11	paradigm	paradigm	NN
cord-345211-4ivqlsgt	12	12	.	.	.
cord-345211-4ivqlsgt	13	1	Pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	13	2	continues	continue	VBZ
cord-345211-4ivqlsgt	13	3	to	to	TO
cord-345211-4ivqlsgt	13	4	provide	provide	VB
cord-345211-4ivqlsgt	13	5	a	a	DT
cord-345211-4ivqlsgt	13	6	huge	huge	JJ
cord-345211-4ivqlsgt	13	7	global	global	JJ
cord-345211-4ivqlsgt	13	8	burden	burden	NN
cord-345211-4ivqlsgt	13	9	of	of	IN
cord-345211-4ivqlsgt	13	10	disease	disease	NN
cord-345211-4ivqlsgt	13	11	[	[	-LRB-
cord-345211-4ivqlsgt	13	12	1	1	CD
cord-345211-4ivqlsgt	13	13	]	]	-RRB-
cord-345211-4ivqlsgt	13	14	.	.	.
cord-345211-4ivqlsgt	14	1	Although	although	IN
cord-345211-4ivqlsgt	14	2	the	the	DT
cord-345211-4ivqlsgt	14	3	incidence	incidence	NN
cord-345211-4ivqlsgt	14	4	of	of	IN
cord-345211-4ivqlsgt	14	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	14	6	increases	increase	VBZ
cord-345211-4ivqlsgt	14	7	with	with	IN
cord-345211-4ivqlsgt	14	8	increasing	increase	VBG
cord-345211-4ivqlsgt	14	9	age	age	NN
cord-345211-4ivqlsgt	14	10	,	,	,
cord-345211-4ivqlsgt	14	11	it	-PRON-	PRP
cord-345211-4ivqlsgt	14	12	is	be	VBZ
cord-345211-4ivqlsgt	14	13	not	not	RB
cord-345211-4ivqlsgt	14	14	widely	widely	RB
cord-345211-4ivqlsgt	14	15	appreciated	appreciate	VBN
cord-345211-4ivqlsgt	14	16	that	that	IN
cord-345211-4ivqlsgt	14	17	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	14	18	is	be	VBZ
cord-345211-4ivqlsgt	14	19	also	also	RB
cord-345211-4ivqlsgt	14	20	the	the	DT
cord-345211-4ivqlsgt	14	21	world	world	NN
cord-345211-4ivqlsgt	14	22	's	's	POS
cord-345211-4ivqlsgt	14	23	biggest	big	JJS
cord-345211-4ivqlsgt	14	24	killer	killer	NN
cord-345211-4ivqlsgt	14	25	of	of	IN
cord-345211-4ivqlsgt	14	26	young	young	JJ
cord-345211-4ivqlsgt	14	27	children	child	NNS
cord-345211-4ivqlsgt	14	28	[	[	-LRB-
cord-345211-4ivqlsgt	14	29	2	2	CD
cord-345211-4ivqlsgt	14	30	]	]	-RRB-
cord-345211-4ivqlsgt	14	31	.	.	.
cord-345211-4ivqlsgt	15	1	A	a	DT
cord-345211-4ivqlsgt	15	2	wide	wide	JJ
cord-345211-4ivqlsgt	15	3	variety	variety	NN
cord-345211-4ivqlsgt	15	4	of	of	IN
cord-345211-4ivqlsgt	15	5	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	15	6	are	be	VBP
cord-345211-4ivqlsgt	15	7	listed	list	VBN
cord-345211-4ivqlsgt	15	8	as	as	IN
cord-345211-4ivqlsgt	15	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	15	10	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	15	11	[	[	-LRB-
cord-345211-4ivqlsgt	15	12	3	3	CD
cord-345211-4ivqlsgt	15	13	]	]	-RRB-
cord-345211-4ivqlsgt	15	14	,	,	,
cord-345211-4ivqlsgt	15	15	and	and	CC
cord-345211-4ivqlsgt	15	16	identification	identification	NN
cord-345211-4ivqlsgt	15	17	of	of	IN
cord-345211-4ivqlsgt	15	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	15	19	etiology	etiology	NN
cord-345211-4ivqlsgt	15	20	is	be	VBZ
cord-345211-4ivqlsgt	15	21	useful	useful	JJ
cord-345211-4ivqlsgt	15	22	for	for	IN
cord-345211-4ivqlsgt	15	23	both	both	DT
cord-345211-4ivqlsgt	15	24	patient	patient	JJ
cord-345211-4ivqlsgt	15	25	management	management	NN
cord-345211-4ivqlsgt	15	26	and	and	CC
cord-345211-4ivqlsgt	15	27	surveillance	surveillance	NN
cord-345211-4ivqlsgt	15	28	purposes	purpose	NNS
cord-345211-4ivqlsgt	15	29	.	.	.
cord-345211-4ivqlsgt	16	1	However	however	RB
cord-345211-4ivqlsgt	16	2	,	,	,
cord-345211-4ivqlsgt	16	3	despite	despite	IN
cord-345211-4ivqlsgt	16	4	increased	increase	VBN
cord-345211-4ivqlsgt	16	5	recognition	recognition	NN
cord-345211-4ivqlsgt	16	6	of	of	IN
cord-345211-4ivqlsgt	16	7	the	the	DT
cord-345211-4ivqlsgt	16	8	burden	burden	NN
cord-345211-4ivqlsgt	16	9	of	of	IN
cord-345211-4ivqlsgt	16	10	disease	disease	NN
cord-345211-4ivqlsgt	16	11	and	and	CC
cord-345211-4ivqlsgt	16	12	advances	advance	NNS
cord-345211-4ivqlsgt	16	13	in	in	IN
cord-345211-4ivqlsgt	16	14	effective	effective	JJ
cord-345211-4ivqlsgt	16	15	vaccines	vaccine	NNS
cord-345211-4ivqlsgt	16	16	against	against	IN
cord-345211-4ivqlsgt	16	17	major	major	JJ
cord-345211-4ivqlsgt	16	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	16	19	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	16	20	,	,	,
cord-345211-4ivqlsgt	16	21	we	-PRON-	PRP
cord-345211-4ivqlsgt	16	22	continue	continue	VBP
cord-345211-4ivqlsgt	16	23	to	to	TO
cord-345211-4ivqlsgt	16	24	struggle	struggle	VB
cord-345211-4ivqlsgt	16	25	in	in	IN
cord-345211-4ivqlsgt	16	26	our	-PRON-	PRP$
cord-345211-4ivqlsgt	16	27	efforts	effort	NNS
cord-345211-4ivqlsgt	16	28	to	to	TO
cord-345211-4ivqlsgt	16	29	identify	identify	VB
cord-345211-4ivqlsgt	16	30	the	the	DT
cord-345211-4ivqlsgt	16	31	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	16	32	that	that	WDT
cord-345211-4ivqlsgt	16	33	cause	cause	VBP
cord-345211-4ivqlsgt	16	34	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	16	35	in	in	IN
cord-345211-4ivqlsgt	16	36	individual	individual	JJ
cord-345211-4ivqlsgt	16	37	patients	patient	NNS
cord-345211-4ivqlsgt	16	38	[	[	-LRB-
cord-345211-4ivqlsgt	16	39	4	4	CD
cord-345211-4ivqlsgt	16	40	]	]	-RRB-
cord-345211-4ivqlsgt	16	41	.	.	.
cord-345211-4ivqlsgt	17	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	17	2	,	,	,
cord-345211-4ivqlsgt	17	3	historically	historically	RB
cord-345211-4ivqlsgt	17	4	,	,	,
cord-345211-4ivqlsgt	17	5	we	-PRON-	PRP
cord-345211-4ivqlsgt	17	6	have	have	VBP
cord-345211-4ivqlsgt	17	7	been	be	VBN
cord-345211-4ivqlsgt	17	8	unable	unable	JJ
cord-345211-4ivqlsgt	17	9	to	to	TO
cord-345211-4ivqlsgt	17	10	define	define	VB
cord-345211-4ivqlsgt	17	11	a	a	DT
cord-345211-4ivqlsgt	17	12	causative	causative	JJ
cord-345211-4ivqlsgt	17	13	pathogen	pathogen	NN
cord-345211-4ivqlsgt	17	14	in	in	IN
cord-345211-4ivqlsgt	17	15	a	a	DT
cord-345211-4ivqlsgt	17	16	significant	significant	JJ
cord-345211-4ivqlsgt	17	17	proportion	proportion	NN
cord-345211-4ivqlsgt	17	18	of	of	IN
cord-345211-4ivqlsgt	17	19	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	17	20	episodes	episode	NNS
cord-345211-4ivqlsgt	17	21	,	,	,
cord-345211-4ivqlsgt	17	22	even	even	RB
cord-345211-4ivqlsgt	17	23	with	with	IN
cord-345211-4ivqlsgt	17	24	the	the	DT
cord-345211-4ivqlsgt	17	25	best	good	JJS
cord-345211-4ivqlsgt	17	26	methods	method	NNS
cord-345211-4ivqlsgt	17	27	.	.	.
cord-345211-4ivqlsgt	18	1	Determining	determine	VBG
cord-345211-4ivqlsgt	18	2	the	the	DT
cord-345211-4ivqlsgt	18	3	microbial	microbial	JJ
cord-345211-4ivqlsgt	18	4	etiology	etiology	NN
cord-345211-4ivqlsgt	18	5	of	of	IN
cord-345211-4ivqlsgt	18	6	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	18	7	in	in	IN
cord-345211-4ivqlsgt	18	8	children	child	NNS
cord-345211-4ivqlsgt	18	9	has	have	VBZ
cord-345211-4ivqlsgt	18	10	been	be	VBN
cord-345211-4ivqlsgt	18	11	a	a	DT
cord-345211-4ivqlsgt	18	12	particular	particular	JJ
cord-345211-4ivqlsgt	18	13	challenge	challenge	NN
cord-345211-4ivqlsgt	18	14	[	[	-LRB-
cord-345211-4ivqlsgt	18	15	5	5	CD
cord-345211-4ivqlsgt	18	16	]	]	-RRB-
cord-345211-4ivqlsgt	18	17	.	.	.
cord-345211-4ivqlsgt	19	1	The	the	DT
cord-345211-4ivqlsgt	19	2	implications	implication	NNS
cord-345211-4ivqlsgt	19	3	of	of	IN
cord-345211-4ivqlsgt	19	4	poor	poor	JJ
cord-345211-4ivqlsgt	19	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	19	6	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	19	7	extend	extend	VBP
cord-345211-4ivqlsgt	19	8	to	to	IN
cord-345211-4ivqlsgt	19	9	the	the	DT
cord-345211-4ivqlsgt	19	10	population	population	NN
cord-345211-4ivqlsgt	19	11	level	level	NN
cord-345211-4ivqlsgt	19	12	as	as	RB
cord-345211-4ivqlsgt	19	13	well	well	RB
cord-345211-4ivqlsgt	19	14	;	;	:
cord-345211-4ivqlsgt	19	15	assessment	assessment	NN
cord-345211-4ivqlsgt	19	16	of	of	IN
cord-345211-4ivqlsgt	19	17	interventions	intervention	NNS
cord-345211-4ivqlsgt	19	18	,	,	,
cord-345211-4ivqlsgt	19	19	such	such	JJ
cord-345211-4ivqlsgt	19	20	as	as	IN
cord-345211-4ivqlsgt	19	21	vaccines	vaccine	NNS
cord-345211-4ivqlsgt	19	22	,	,	,
cord-345211-4ivqlsgt	19	23	is	be	VBZ
cord-345211-4ivqlsgt	19	24	hindered	hinder	VBN
cord-345211-4ivqlsgt	19	25	by	by	IN
cord-345211-4ivqlsgt	19	26	suboptimal	suboptimal	JJ
cord-345211-4ivqlsgt	19	27	measures	measure	NNS
cord-345211-4ivqlsgt	19	28	of	of	IN
cord-345211-4ivqlsgt	19	29	disease	disease	NN
cord-345211-4ivqlsgt	19	30	impact	impact	NN
cord-345211-4ivqlsgt	19	31	that	that	WDT
cord-345211-4ivqlsgt	19	32	often	often	RB
cord-345211-4ivqlsgt	19	33	rely	rely	VBP
cord-345211-4ivqlsgt	19	34	on	on	IN
cord-345211-4ivqlsgt	19	35	accurate	accurate	JJ
cord-345211-4ivqlsgt	19	36	surveillance	surveillance	NN
cord-345211-4ivqlsgt	19	37	data	datum	NNS
cord-345211-4ivqlsgt	19	38	[	[	-LRB-
cord-345211-4ivqlsgt	19	39	6	6	CD
cord-345211-4ivqlsgt	19	40	]	]	-RRB-
cord-345211-4ivqlsgt	19	41	.	.	.
cord-345211-4ivqlsgt	20	1	Why	why	WRB
cord-345211-4ivqlsgt	20	2	is	be	VBZ
cord-345211-4ivqlsgt	20	3	it	-PRON-	PRP
cord-345211-4ivqlsgt	20	4	so	so	RB
cord-345211-4ivqlsgt	20	5	difficult	difficult	JJ
cord-345211-4ivqlsgt	20	6	to	to	TO
cord-345211-4ivqlsgt	20	7	determine	determine	VB
cord-345211-4ivqlsgt	20	8	the	the	DT
cord-345211-4ivqlsgt	20	9	microbial	microbial	JJ
cord-345211-4ivqlsgt	20	10	etiology	etiology	NN
cord-345211-4ivqlsgt	20	11	of	of	IN
cord-345211-4ivqlsgt	20	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	20	13	?	?	.
cord-345211-4ivqlsgt	21	1	The	the	DT
cord-345211-4ivqlsgt	21	2	inability	inability	NN
cord-345211-4ivqlsgt	21	3	to	to	TO
cord-345211-4ivqlsgt	21	4	obtain	obtain	VB
cord-345211-4ivqlsgt	21	5	good	good	JJ
cord-345211-4ivqlsgt	21	6	quality	quality	NN
cord-345211-4ivqlsgt	21	7	specimens	specimen	NNS
cord-345211-4ivqlsgt	21	8	from	from	IN
cord-345211-4ivqlsgt	21	9	the	the	DT
cord-345211-4ivqlsgt	21	10	lower	low	JJR
cord-345211-4ivqlsgt	21	11	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	21	12	tract	tract	NN
cord-345211-4ivqlsgt	21	13	is	be	VBZ
cord-345211-4ivqlsgt	21	14	one	one	CD
cord-345211-4ivqlsgt	21	15	fundamental	fundamental	JJ
cord-345211-4ivqlsgt	21	16	problem	problem	NN
cord-345211-4ivqlsgt	21	17	with	with	IN
cord-345211-4ivqlsgt	21	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	21	19	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	21	20	.	.	.
cord-345211-4ivqlsgt	22	1	Whereas	whereas	IN
cord-345211-4ivqlsgt	22	2	,	,	,
cord-345211-4ivqlsgt	22	3	it	-PRON-	PRP
cord-345211-4ivqlsgt	22	4	is	be	VBZ
cord-345211-4ivqlsgt	22	5	relatively	relatively	RB
cord-345211-4ivqlsgt	22	6	easy	easy	JJ
cord-345211-4ivqlsgt	22	7	to	to	TO
cord-345211-4ivqlsgt	22	8	get	get	VB
cord-345211-4ivqlsgt	22	9	specimens	specimen	NNS
cord-345211-4ivqlsgt	22	10	from	from	IN
cord-345211-4ivqlsgt	22	11	the	the	DT
cord-345211-4ivqlsgt	22	12	site	site	NN
cord-345211-4ivqlsgt	22	13	of	of	IN
cord-345211-4ivqlsgt	22	14	infection	infection	NN
cord-345211-4ivqlsgt	22	15	with	with	IN
cord-345211-4ivqlsgt	22	16	diseases	disease	NNS
cord-345211-4ivqlsgt	22	17	such	such	JJ
cord-345211-4ivqlsgt	22	18	as	as	IN
cord-345211-4ivqlsgt	22	19	meningitis	meningitis	NN
cord-345211-4ivqlsgt	22	20	,	,	,
cord-345211-4ivqlsgt	22	21	gastroenteritis	gastroenteritis	NN
cord-345211-4ivqlsgt	22	22	,	,	,
cord-345211-4ivqlsgt	22	23	and	and	CC
cord-345211-4ivqlsgt	22	24	endocarditis	endocarditis	NN
cord-345211-4ivqlsgt	22	25	,	,	,
cord-345211-4ivqlsgt	23	1	obtaining	obtain	VBG
cord-345211-4ivqlsgt	23	2	representative	representative	JJ
cord-345211-4ivqlsgt	23	3	and	and	CC
cord-345211-4ivqlsgt	23	4	uncontaminated	uncontaminated	JJ
cord-345211-4ivqlsgt	23	5	specimens	specimen	NNS
cord-345211-4ivqlsgt	23	6	from	from	IN
cord-345211-4ivqlsgt	23	7	the	the	DT
cord-345211-4ivqlsgt	23	8	lungs	lung	NNS
cord-345211-4ivqlsgt	23	9	in	in	IN
cord-345211-4ivqlsgt	23	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	23	11	is	be	VBZ
cord-345211-4ivqlsgt	23	12	a	a	DT
cord-345211-4ivqlsgt	23	13	challenge	challenge	NN
cord-345211-4ivqlsgt	23	14	.	.	.
cord-345211-4ivqlsgt	24	1	Sputum	Sputum	NNP
cord-345211-4ivqlsgt	24	2	and	and	CC
cord-345211-4ivqlsgt	24	3	bronchoscopic	bronchoscopic	NNP
cord-345211-4ivqlsgt	24	4	specimens	specimen	NNS
cord-345211-4ivqlsgt	24	5	may	may	MD
cord-345211-4ivqlsgt	24	6	be	be	VB
cord-345211-4ivqlsgt	24	7	contaminated	contaminate	VBN
cord-345211-4ivqlsgt	24	8	by	by	IN
cord-345211-4ivqlsgt	24	9	normal	normal	JJ
cord-345211-4ivqlsgt	24	10	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	24	11	flora	flora	NNS
cord-345211-4ivqlsgt	24	12	,	,	,
cord-345211-4ivqlsgt	24	13	and	and	CC
cord-345211-4ivqlsgt	24	14	transthoracic	transthoracic	NNP
cord-345211-4ivqlsgt	24	15	lung	lung	NNP
cord-345211-4ivqlsgt	24	16	aspirates	aspirate	NNS
cord-345211-4ivqlsgt	24	17	are	be	VBP
cord-345211-4ivqlsgt	24	18	rarely	rarely	RB
cord-345211-4ivqlsgt	24	19	performed	perform	VBN
cord-345211-4ivqlsgt	24	20	despite	despite	IN
cord-345211-4ivqlsgt	24	21	a	a	DT
cord-345211-4ivqlsgt	24	22	good	good	JJ
cord-345211-4ivqlsgt	24	23	safety	safety	NN
cord-345211-4ivqlsgt	24	24	profile	profile	NN
cord-345211-4ivqlsgt	24	25	[	[	-LRB-
cord-345211-4ivqlsgt	24	26	7	7	CD
cord-345211-4ivqlsgt	24	27	]	]	-RRB-
cord-345211-4ivqlsgt	24	28	.	.	.
cord-345211-4ivqlsgt	25	1	Instead	instead	RB
cord-345211-4ivqlsgt	25	2	,	,	,
cord-345211-4ivqlsgt	25	3	we	-PRON-	PRP
cord-345211-4ivqlsgt	25	4	are	be	VBP
cord-345211-4ivqlsgt	25	5	currently	currently	RB
cord-345211-4ivqlsgt	25	6	reliant	reliant	JJ
cord-345211-4ivqlsgt	25	7	on	on	IN
cord-345211-4ivqlsgt	25	8	testing	test	VBG
cord-345211-4ivqlsgt	25	9	more	more	RBR
cord-345211-4ivqlsgt	25	10	distant	distant	JJ
cord-345211-4ivqlsgt	25	11	clinical	clinical	JJ
cord-345211-4ivqlsgt	25	12	specimens	specimen	NNS
cord-345211-4ivqlsgt	25	13	,	,	,
cord-345211-4ivqlsgt	25	14	particularly	particularly	RB
cord-345211-4ivqlsgt	25	15	from	from	IN
cord-345211-4ivqlsgt	25	16	the	the	DT
cord-345211-4ivqlsgt	25	17	upper	upper	JJ
cord-345211-4ivqlsgt	25	18	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	25	19	tract	tract	NN
cord-345211-4ivqlsgt	25	20	,	,	,
cord-345211-4ivqlsgt	25	21	blood	blood	NN
cord-345211-4ivqlsgt	25	22	,	,	,
cord-345211-4ivqlsgt	25	23	or	or	CC
cord-345211-4ivqlsgt	25	24	urine	urine	NN
cord-345211-4ivqlsgt	25	25	.	.	.
cord-345211-4ivqlsgt	26	1	In	in	IN
cord-345211-4ivqlsgt	26	2	general	general	JJ
cord-345211-4ivqlsgt	26	3	,	,	,
cord-345211-4ivqlsgt	26	4	testing	test	VBG
cord-345211-4ivqlsgt	26	5	these	these	DT
cord-345211-4ivqlsgt	26	6	specimens	specimen	NNS
cord-345211-4ivqlsgt	26	7	has	have	VBZ
cord-345211-4ivqlsgt	26	8	suboptimal	suboptimal	JJ
cord-345211-4ivqlsgt	26	9	sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	26	10	and/or	and/or	CC
cord-345211-4ivqlsgt	26	11	specificity	specificity	NN
cord-345211-4ivqlsgt	26	12	for	for	IN
cord-345211-4ivqlsgt	26	13	determining	determine	VBG
cord-345211-4ivqlsgt	26	14	the	the	DT
cord-345211-4ivqlsgt	26	15	microbial	microbial	JJ
cord-345211-4ivqlsgt	26	16	etiology	etiology	NN
cord-345211-4ivqlsgt	26	17	of	of	IN
cord-345211-4ivqlsgt	26	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	26	19	with	with	IN
cord-345211-4ivqlsgt	26	20	confidence	confidence	NN
cord-345211-4ivqlsgt	26	21	.	.	.
cord-345211-4ivqlsgt	27	1	A	a	DT
cord-345211-4ivqlsgt	27	2	second	second	JJ
cord-345211-4ivqlsgt	27	3	important	important	JJ
cord-345211-4ivqlsgt	27	4	issue	issue	NN
cord-345211-4ivqlsgt	27	5	hindering	hinder	VBG
cord-345211-4ivqlsgt	27	6	our	-PRON-	PRP$
cord-345211-4ivqlsgt	27	7	ability	ability	NN
cord-345211-4ivqlsgt	27	8	to	to	TO
cord-345211-4ivqlsgt	27	9	determine	determine	VB
cord-345211-4ivqlsgt	27	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	27	11	etiology	etiology	NN
cord-345211-4ivqlsgt	27	12	is	be	VBZ
cord-345211-4ivqlsgt	27	13	the	the	DT
cord-345211-4ivqlsgt	27	14	fact	fact	NN
cord-345211-4ivqlsgt	27	15	that	that	IN
cord-345211-4ivqlsgt	27	16	some	some	DT
cord-345211-4ivqlsgt	27	17	major	major	JJ
cord-345211-4ivqlsgt	27	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	27	19	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	27	20	,	,	,
cord-345211-4ivqlsgt	27	21	such	such	JJ
cord-345211-4ivqlsgt	27	22	as	as	IN
cord-345211-4ivqlsgt	27	23	Streptococcus	streptococcus	NN
cord-345211-4ivqlsgt	27	24	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	27	25	,	,	,
cord-345211-4ivqlsgt	27	26	Haemophilus	haemophilus	JJ
cord-345211-4ivqlsgt	27	27	influenzae	influenzae	NN
cord-345211-4ivqlsgt	27	28	,	,	,
cord-345211-4ivqlsgt	27	29	and	and	CC
cord-345211-4ivqlsgt	27	30	Staphylococcus	Staphylococcus	NNP
cord-345211-4ivqlsgt	27	31	aureus	aureus	NN
cord-345211-4ivqlsgt	27	32	,	,	,
cord-345211-4ivqlsgt	27	33	may	may	MD
cord-345211-4ivqlsgt	27	34	also	also	RB
cord-345211-4ivqlsgt	27	35	asymptomatically	asymptomatically	RB
cord-345211-4ivqlsgt	27	36	colonize	colonize	VB
cord-345211-4ivqlsgt	27	37	the	the	DT
cord-345211-4ivqlsgt	27	38	upper	upper	JJ
cord-345211-4ivqlsgt	27	39	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	27	40	tract	tract	NN
cord-345211-4ivqlsgt	27	41	as	as	IN
cord-345211-4ivqlsgt	27	42	part	part	NN
cord-345211-4ivqlsgt	27	43	of	of	IN
cord-345211-4ivqlsgt	27	44	normal	normal	JJ
cord-345211-4ivqlsgt	27	45	oropharyngeal	oropharyngeal	JJ
cord-345211-4ivqlsgt	27	46	flora	flora	NNS
cord-345211-4ivqlsgt	27	47	.	.	.
cord-345211-4ivqlsgt	28	1	Consequently	consequently	RB
cord-345211-4ivqlsgt	28	2	,	,	,
cord-345211-4ivqlsgt	28	3	the	the	DT
cord-345211-4ivqlsgt	28	4	detection	detection	NN
cord-345211-4ivqlsgt	28	5	of	of	IN
cord-345211-4ivqlsgt	28	6	these	these	DT
cord-345211-4ivqlsgt	28	7	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	28	8	is	be	VBZ
cord-345211-4ivqlsgt	28	9	insufficient	insufficient	JJ
cord-345211-4ivqlsgt	28	10	by	by	IN
cord-345211-4ivqlsgt	28	11	itself	-PRON-	PRP
cord-345211-4ivqlsgt	28	12	in	in	IN
cord-345211-4ivqlsgt	28	13	order	order	NN
cord-345211-4ivqlsgt	28	14	to	to	TO
cord-345211-4ivqlsgt	28	15	attribute	attribute	VB
cord-345211-4ivqlsgt	28	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	28	17	causation	causation	NN
cord-345211-4ivqlsgt	28	18	.	.	.
cord-345211-4ivqlsgt	29	1	This	this	DT
cord-345211-4ivqlsgt	29	2	perspective	perspective	NN
cord-345211-4ivqlsgt	29	3	reviews	review	VBZ
cord-345211-4ivqlsgt	29	4	the	the	DT
cord-345211-4ivqlsgt	29	5	current	current	JJ
cord-345211-4ivqlsgt	29	6	use	use	NN
cord-345211-4ivqlsgt	29	7	of	of	IN
cord-345211-4ivqlsgt	29	8	molecular	molecular	JJ
cord-345211-4ivqlsgt	29	9	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	29	10	for	for	IN
cord-345211-4ivqlsgt	29	11	determining	determine	VBG
cord-345211-4ivqlsgt	29	12	the	the	DT
cord-345211-4ivqlsgt	29	13	microbial	microbial	JJ
cord-345211-4ivqlsgt	29	14	etiology	etiology	NN
cord-345211-4ivqlsgt	29	15	of	of	IN
cord-345211-4ivqlsgt	29	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	29	17	and	and	CC
cord-345211-4ivqlsgt	29	18	future	future	JJ
cord-345211-4ivqlsgt	29	19	prospects	prospect	NNS
cord-345211-4ivqlsgt	29	20	for	for	IN
cord-345211-4ivqlsgt	29	21	this	this	DT
cord-345211-4ivqlsgt	29	22	purpose	purpose	NN
cord-345211-4ivqlsgt	29	23	.	.	.
cord-345211-4ivqlsgt	30	1	The	the	DT
cord-345211-4ivqlsgt	30	2	focus	focus	NN
cord-345211-4ivqlsgt	30	3	is	be	VBZ
cord-345211-4ivqlsgt	30	4	on	on	IN
cord-345211-4ivqlsgt	30	5	recent	recent	JJ
cord-345211-4ivqlsgt	30	6	advances	advance	NNS
cord-345211-4ivqlsgt	30	7	and	and	CC
cord-345211-4ivqlsgt	30	8	their	-PRON-	PRP$
cord-345211-4ivqlsgt	30	9	clinical	clinical	JJ
cord-345211-4ivqlsgt	30	10	applications	application	NNS
cord-345211-4ivqlsgt	30	11	rather	rather	RB
cord-345211-4ivqlsgt	30	12	than	than	IN
cord-345211-4ivqlsgt	30	13	detailed	detailed	JJ
cord-345211-4ivqlsgt	30	14	description	description	NN
cord-345211-4ivqlsgt	30	15	of	of	IN
cord-345211-4ivqlsgt	30	16	specific	specific	JJ
cord-345211-4ivqlsgt	30	17	technologies	technology	NNS
cord-345211-4ivqlsgt	30	18	.	.	.
cord-345211-4ivqlsgt	31	1	Presently	presently	RB
cord-345211-4ivqlsgt	31	2	,	,	,
cord-345211-4ivqlsgt	31	3	we	-PRON-	PRP
cord-345211-4ivqlsgt	31	4	are	be	VBP
cord-345211-4ivqlsgt	31	5	still	still	RB
cord-345211-4ivqlsgt	31	6	reliant	reliant	JJ
cord-345211-4ivqlsgt	31	7	on	on	IN
cord-345211-4ivqlsgt	31	8	traditional	traditional	JJ
cord-345211-4ivqlsgt	31	9	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	31	10	tools	tool	NNS
cord-345211-4ivqlsgt	31	11	that	that	WDT
cord-345211-4ivqlsgt	31	12	have	have	VBP
cord-345211-4ivqlsgt	31	13	been	be	VBN
cord-345211-4ivqlsgt	31	14	used	use	VBN
cord-345211-4ivqlsgt	31	15	for	for	IN
cord-345211-4ivqlsgt	31	16	decades	decade	NNS
cord-345211-4ivqlsgt	31	17	to	to	TO
cord-345211-4ivqlsgt	31	18	determine	determine	VB
cord-345211-4ivqlsgt	31	19	the	the	DT
cord-345211-4ivqlsgt	31	20	microbial	microbial	JJ
cord-345211-4ivqlsgt	31	21	etiology	etiology	NN
cord-345211-4ivqlsgt	31	22	of	of	IN
cord-345211-4ivqlsgt	31	23	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	31	24	.	.	.
cord-345211-4ivqlsgt	32	1	Current	current	JJ
cord-345211-4ivqlsgt	32	2	guidelines	guideline	NNS
cord-345211-4ivqlsgt	32	3	for	for	IN
cord-345211-4ivqlsgt	32	4	the	the	DT
cord-345211-4ivqlsgt	32	5	management	management	NN
cord-345211-4ivqlsgt	32	6	of	of	IN
cord-345211-4ivqlsgt	32	7	community	community	NN
cord-345211-4ivqlsgt	32	8	-	-	HYPH
cord-345211-4ivqlsgt	32	9	acquired	acquire	VBN
cord-345211-4ivqlsgt	32	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	32	11	in	in	IN
cord-345211-4ivqlsgt	32	12	adults	adult	NNS
cord-345211-4ivqlsgt	32	13	typically	typically	RB
cord-345211-4ivqlsgt	32	14	recommend	recommend	VBP
cord-345211-4ivqlsgt	32	15	that	that	IN
cord-345211-4ivqlsgt	32	16	microbiologic	microbiologic	JJ
cord-345211-4ivqlsgt	32	17	testing	testing	NN
cord-345211-4ivqlsgt	32	18	should	should	MD
cord-345211-4ivqlsgt	32	19	be	be	VB
cord-345211-4ivqlsgt	32	20	largely	largely	RB
cord-345211-4ivqlsgt	32	21	restricted	restrict	VBN
cord-345211-4ivqlsgt	32	22	to	to	IN
cord-345211-4ivqlsgt	32	23	patients	patient	NNS
cord-345211-4ivqlsgt	32	24	with	with	IN
cord-345211-4ivqlsgt	32	25	more	more	RBR
cord-345211-4ivqlsgt	32	26	severe	severe	JJ
cord-345211-4ivqlsgt	32	27	disease	disease	NN
cord-345211-4ivqlsgt	32	28	,	,	,
cord-345211-4ivqlsgt	32	29	and	and	CC
cord-345211-4ivqlsgt	32	30	give	give	VB
cord-345211-4ivqlsgt	32	31	guidance	guidance	NN
cord-345211-4ivqlsgt	32	32	about	about	IN
cord-345211-4ivqlsgt	32	33	the	the	DT
cord-345211-4ivqlsgt	32	34	judicious	judicious	JJ
cord-345211-4ivqlsgt	32	35	use	use	NN
cord-345211-4ivqlsgt	32	36	of	of	IN
cord-345211-4ivqlsgt	32	37	blood	blood	NN
cord-345211-4ivqlsgt	32	38	cultures	culture	NNS
cord-345211-4ivqlsgt	32	39	,	,	,
cord-345211-4ivqlsgt	32	40	sputum	sputum	NN
cord-345211-4ivqlsgt	32	41	microscopy	microscopy	NNS
cord-345211-4ivqlsgt	32	42	and	and	CC
cord-345211-4ivqlsgt	32	43	culture	culture	NN
cord-345211-4ivqlsgt	32	44	,	,	,
cord-345211-4ivqlsgt	32	45	urinary	urinary	JJ
cord-345211-4ivqlsgt	32	46	antigen	antigen	NN
cord-345211-4ivqlsgt	32	47	tests	test	NNS
cord-345211-4ivqlsgt	32	48	,	,	,
cord-345211-4ivqlsgt	32	49	and	and	CC
cord-345211-4ivqlsgt	32	50	serology	serology	NN
cord-345211-4ivqlsgt	32	51	[	[	-LRB-
cord-345211-4ivqlsgt	32	52	8	8	CD
cord-345211-4ivqlsgt	32	53	]	]	-RRB-
cord-345211-4ivqlsgt	32	54	[	[	-LRB-
cord-345211-4ivqlsgt	32	55	9	9	CD
cord-345211-4ivqlsgt	32	56	]	]	-RRB-
cord-345211-4ivqlsgt	32	57	[	[	-LRB-
cord-345211-4ivqlsgt	32	58	10	10	CD
cord-345211-4ivqlsgt	32	59	]	]	-RRB-
cord-345211-4ivqlsgt	32	60	.	.	.
cord-345211-4ivqlsgt	33	1	Guidelines	guideline	NNS
cord-345211-4ivqlsgt	33	2	for	for	IN
cord-345211-4ivqlsgt	33	3	the	the	DT
cord-345211-4ivqlsgt	33	4	management	management	NN
cord-345211-4ivqlsgt	33	5	of	of	IN
cord-345211-4ivqlsgt	33	6	community	community	NN
cord-345211-4ivqlsgt	33	7	-	-	HYPH
cord-345211-4ivqlsgt	33	8	acquired	acquire	VBN
cord-345211-4ivqlsgt	33	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	33	10	in	in	IN
cord-345211-4ivqlsgt	33	11	children	child	NNS
cord-345211-4ivqlsgt	33	12	are	be	VBP
cord-345211-4ivqlsgt	33	13	even	even	RB
cord-345211-4ivqlsgt	33	14	more	more	RBR
cord-345211-4ivqlsgt	33	15	restrictive	restrictive	JJ
cord-345211-4ivqlsgt	33	16	,	,	,
cord-345211-4ivqlsgt	33	17	again	again	RB
cord-345211-4ivqlsgt	33	18	recommending	recommend	VBG
cord-345211-4ivqlsgt	33	19	that	that	IN
cord-345211-4ivqlsgt	33	20	tests	test	NNS
cord-345211-4ivqlsgt	33	21	should	should	MD
cord-345211-4ivqlsgt	33	22	mainly	mainly	RB
cord-345211-4ivqlsgt	33	23	be	be	VB
cord-345211-4ivqlsgt	33	24	used	use	VBN
cord-345211-4ivqlsgt	33	25	on	on	IN
cord-345211-4ivqlsgt	33	26	patients	patient	NNS
cord-345211-4ivqlsgt	33	27	with	with	IN
cord-345211-4ivqlsgt	33	28	severe	severe	JJ
cord-345211-4ivqlsgt	33	29	disease	disease	NN
cord-345211-4ivqlsgt	33	30	,	,	,
cord-345211-4ivqlsgt	33	31	with	with	IN
cord-345211-4ivqlsgt	33	32	a	a	DT
cord-345211-4ivqlsgt	33	33	focus	focus	NN
cord-345211-4ivqlsgt	33	34	on	on	IN
cord-345211-4ivqlsgt	33	35	blood	blood	NN
cord-345211-4ivqlsgt	33	36	cultures	culture	NNS
cord-345211-4ivqlsgt	33	37	and	and	CC
cord-345211-4ivqlsgt	33	38	detection	detection	NN
cord-345211-4ivqlsgt	33	39	of	of	IN
cord-345211-4ivqlsgt	33	40	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	33	41	viruses	virus	NNS
cord-345211-4ivqlsgt	33	42	[	[	-LRB-
cord-345211-4ivqlsgt	33	43	11	11	CD
cord-345211-4ivqlsgt	33	44	,	,	,
cord-345211-4ivqlsgt	33	45	12	12	CD
cord-345211-4ivqlsgt	33	46	]	]	-RRB-
cord-345211-4ivqlsgt	33	47	.	.	.
cord-345211-4ivqlsgt	34	1	Common	common	JJ
cord-345211-4ivqlsgt	34	2	to	to	IN
cord-345211-4ivqlsgt	34	3	these	these	DT
cord-345211-4ivqlsgt	34	4	guidelines	guideline	NNS
cord-345211-4ivqlsgt	34	5	is	be	VBZ
cord-345211-4ivqlsgt	34	6	a	a	DT
cord-345211-4ivqlsgt	34	7	cautious	cautious	JJ
cord-345211-4ivqlsgt	34	8	approach	approach	NN
cord-345211-4ivqlsgt	34	9	to	to	IN
cord-345211-4ivqlsgt	34	10	the	the	DT
cord-345211-4ivqlsgt	34	11	use	use	NN
cord-345211-4ivqlsgt	34	12	of	of	IN
cord-345211-4ivqlsgt	34	13	molecular	molecular	JJ
cord-345211-4ivqlsgt	34	14	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	34	15	,	,	,
cord-345211-4ivqlsgt	34	16	although	although	IN
cord-345211-4ivqlsgt	34	17	this	this	DT
cord-345211-4ivqlsgt	34	18	may	may	MD
cord-345211-4ivqlsgt	34	19	change	change	VB
cord-345211-4ivqlsgt	34	20	with	with	IN
cord-345211-4ivqlsgt	34	21	ongoing	ongoing	JJ
cord-345211-4ivqlsgt	34	22	reviews	review	NNS
cord-345211-4ivqlsgt	34	23	.	.	.
cord-345211-4ivqlsgt	35	1	This	this	DT
cord-345211-4ivqlsgt	35	2	caution	caution	NN
cord-345211-4ivqlsgt	35	3	is	be	VBZ
cord-345211-4ivqlsgt	35	4	driven	drive	VBN
cord-345211-4ivqlsgt	35	5	partly	partly	RB
cord-345211-4ivqlsgt	35	6	by	by	IN
cord-345211-4ivqlsgt	35	7	the	the	DT
cord-345211-4ivqlsgt	35	8	perceived	perceive	VBN
cord-345211-4ivqlsgt	35	9	and	and	CC
cord-345211-4ivqlsgt	35	10	real	real	JJ
cord-345211-4ivqlsgt	35	11	lack	lack	NN
cord-345211-4ivqlsgt	35	12	of	of	IN
cord-345211-4ivqlsgt	35	13	commercial	commercial	JJ
cord-345211-4ivqlsgt	35	14	and	and	CC
cord-345211-4ivqlsgt	35	15	standardized	standardized	JJ
cord-345211-4ivqlsgt	35	16	assays	assay	NNS
cord-345211-4ivqlsgt	35	17	and	and	CC
cord-345211-4ivqlsgt	35	18	partly	partly	RB
cord-345211-4ivqlsgt	35	19	by	by	IN
cord-345211-4ivqlsgt	35	20	lack	lack	NN
cord-345211-4ivqlsgt	35	21	of	of	IN
cord-345211-4ivqlsgt	35	22	good	good	JJ
cord-345211-4ivqlsgt	35	23	data	datum	NNS
cord-345211-4ivqlsgt	35	24	on	on	IN
cord-345211-4ivqlsgt	35	25	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	35	26	accuracy	accuracy	NN
cord-345211-4ivqlsgt	35	27	.	.	.
cord-345211-4ivqlsgt	36	1	There	there	EX
cord-345211-4ivqlsgt	36	2	is	be	VBZ
cord-345211-4ivqlsgt	36	3	also	also	RB
cord-345211-4ivqlsgt	36	4	a	a	DT
cord-345211-4ivqlsgt	36	5	lingering	linger	VBG
cord-345211-4ivqlsgt	36	6	perception	perception	NN
cord-345211-4ivqlsgt	36	7	that	that	IN
cord-345211-4ivqlsgt	36	8	molecular	molecular	JJ
cord-345211-4ivqlsgt	36	9	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	36	10	are	be	VBP
cord-345211-4ivqlsgt	36	11	expensive	expensive	JJ
cord-345211-4ivqlsgt	36	12	tests	test	NNS
cord-345211-4ivqlsgt	36	13	and	and	CC
cord-345211-4ivqlsgt	36	14	that	that	IN
cord-345211-4ivqlsgt	36	15	use	use	NN
cord-345211-4ivqlsgt	36	16	should	should	MD
cord-345211-4ivqlsgt	36	17	be	be	VB
cord-345211-4ivqlsgt	36	18	restricted	restrict	VBN
cord-345211-4ivqlsgt	36	19	on	on	IN
cord-345211-4ivqlsgt	36	20	this	this	DT
cord-345211-4ivqlsgt	36	21	basis	basis	NN
cord-345211-4ivqlsgt	36	22	.	.	.
cord-345211-4ivqlsgt	37	1	Cost	cost	NN
cord-345211-4ivqlsgt	37	2	is	be	VBZ
cord-345211-4ivqlsgt	37	3	not	not	RB
cord-345211-4ivqlsgt	37	4	the	the	DT
cord-345211-4ivqlsgt	37	5	barrier	barrier	NN
cord-345211-4ivqlsgt	37	6	it	-PRON-	PRP
cord-345211-4ivqlsgt	37	7	used	use	VBD
cord-345211-4ivqlsgt	37	8	to	to	TO
cord-345211-4ivqlsgt	37	9	be	be	VB
cord-345211-4ivqlsgt	37	10	,	,	,
cord-345211-4ivqlsgt	37	11	and	and	CC
cord-345211-4ivqlsgt	37	12	the	the	DT
cord-345211-4ivqlsgt	37	13	relative	relative	JJ
cord-345211-4ivqlsgt	37	14	price	price	NN
cord-345211-4ivqlsgt	37	15	of	of	IN
cord-345211-4ivqlsgt	37	16	molecular	molecular	JJ
cord-345211-4ivqlsgt	37	17	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	37	18	has	have	VBZ
cord-345211-4ivqlsgt	37	19	actually	actually	RB
cord-345211-4ivqlsgt	37	20	fallen	fall	VBN
cord-345211-4ivqlsgt	37	21	over	over	IN
cord-345211-4ivqlsgt	37	22	recent	recent	JJ
cord-345211-4ivqlsgt	37	23	years	year	NNS
cord-345211-4ivqlsgt	37	24	.	.	.
cord-345211-4ivqlsgt	38	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	38	2	,	,	,
cord-345211-4ivqlsgt	38	3	many	many	JJ
cord-345211-4ivqlsgt	38	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	38	5	assays	assay	NNS
cord-345211-4ivqlsgt	38	6	are	be	VBP
cord-345211-4ivqlsgt	38	7	now	now	RB
cord-345211-4ivqlsgt	38	8	comparable	comparable	JJ
cord-345211-4ivqlsgt	38	9	in	in	IN
cord-345211-4ivqlsgt	38	10	cost	cost	NN
cord-345211-4ivqlsgt	38	11	to	to	IN
cord-345211-4ivqlsgt	38	12	conventional	conventional	JJ
cord-345211-4ivqlsgt	38	13	culture	culture	NN
cord-345211-4ivqlsgt	38	14	-	-	HYPH
cord-345211-4ivqlsgt	38	15	based	base	VBN
cord-345211-4ivqlsgt	38	16	methods	method	NNS
cord-345211-4ivqlsgt	38	17	.	.	.
cord-345211-4ivqlsgt	39	1	Molecular	molecular	JJ
cord-345211-4ivqlsgt	39	2	methods	method	NNS
cord-345211-4ivqlsgt	39	3	have	have	VBP
cord-345211-4ivqlsgt	39	4	been	be	VBN
cord-345211-4ivqlsgt	39	5	a	a	DT
cord-345211-4ivqlsgt	39	6	particularly	particularly	RB
cord-345211-4ivqlsgt	39	7	welcome	welcome	JJ
cord-345211-4ivqlsgt	39	8	addition	addition	NN
cord-345211-4ivqlsgt	39	9	to	to	IN
cord-345211-4ivqlsgt	39	10	the	the	DT
cord-345211-4ivqlsgt	39	11	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	39	12	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	39	13	toolbox	toolbox	NN
cord-345211-4ivqlsgt	39	14	.	.	.
cord-345211-4ivqlsgt	40	1	Collectively	collectively	RB
cord-345211-4ivqlsgt	40	2	,	,	,
cord-345211-4ivqlsgt	40	3	they	-PRON-	PRP
cord-345211-4ivqlsgt	40	4	represent	represent	VBP
cord-345211-4ivqlsgt	40	5	the	the	DT
cord-345211-4ivqlsgt	40	6	single	single	JJ
cord-345211-4ivqlsgt	40	7	biggest	big	JJS
cord-345211-4ivqlsgt	40	8	recent	recent	JJ
cord-345211-4ivqlsgt	40	9	advance	advance	NN
cord-345211-4ivqlsgt	40	10	in	in	IN
cord-345211-4ivqlsgt	40	11	the	the	DT
cord-345211-4ivqlsgt	40	12	field	field	NN
cord-345211-4ivqlsgt	40	13	.	.	.
cord-345211-4ivqlsgt	41	1	While	while	IN
cord-345211-4ivqlsgt	41	2	not	not	RB
cord-345211-4ivqlsgt	41	3	exactly	exactly	RB
cord-345211-4ivqlsgt	41	4	new	new	JJ
cord-345211-4ivqlsgt	41	5	(	(	-LRB-
cord-345211-4ivqlsgt	41	6	polymerase	polymerase	NN
cord-345211-4ivqlsgt	41	7	chain	chain	NN
cord-345211-4ivqlsgt	41	8	reaction	reaction	NN
cord-345211-4ivqlsgt	41	9	(	(	-LRB-
cord-345211-4ivqlsgt	41	10	PCR	PCR	NNP
cord-345211-4ivqlsgt	41	11	)	)	-RRB-
cord-345211-4ivqlsgt	41	12	assays	assay	NNS
cord-345211-4ivqlsgt	41	13	for	for	IN
cord-345211-4ivqlsgt	41	14	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	41	15	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	41	16	have	have	VBP
cord-345211-4ivqlsgt	41	17	been	be	VBN
cord-345211-4ivqlsgt	41	18	around	around	RB
cord-345211-4ivqlsgt	41	19	for	for	IN
cord-345211-4ivqlsgt	41	20	over	over	IN
cord-345211-4ivqlsgt	41	21	20	20	CD
cord-345211-4ivqlsgt	41	22	years	year	NNS
cord-345211-4ivqlsgt	41	23	)	)	-RRB-
cord-345211-4ivqlsgt	41	24	,	,	,
cord-345211-4ivqlsgt	41	25	the	the	DT
cord-345211-4ivqlsgt	41	26	widespread	widespread	JJ
cord-345211-4ivqlsgt	41	27	adoption	adoption	NN
cord-345211-4ivqlsgt	41	28	of	of	IN
cord-345211-4ivqlsgt	41	29	nucleic	nucleic	JJ
cord-345211-4ivqlsgt	41	30	acid	acid	NN
cord-345211-4ivqlsgt	41	31	detection	detection	NN
cord-345211-4ivqlsgt	41	32	tests	test	NNS
cord-345211-4ivqlsgt	41	33	(	(	-LRB-
cord-345211-4ivqlsgt	41	34	NATs	NATs	NNP
cord-345211-4ivqlsgt	41	35	)	)	-RRB-
cord-345211-4ivqlsgt	41	36	by	by	IN
cord-345211-4ivqlsgt	41	37	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	41	38	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	41	39	has	have	VBZ
cord-345211-4ivqlsgt	41	40	been	be	VBN
cord-345211-4ivqlsgt	41	41	relatively	relatively	RB
cord-345211-4ivqlsgt	41	42	slow	slow	JJ
cord-345211-4ivqlsgt	41	43	.	.	.
cord-345211-4ivqlsgt	42	1	This	this	DT
cord-345211-4ivqlsgt	42	2	contrasts	contrast	VBZ
cord-345211-4ivqlsgt	42	3	to	to	IN
cord-345211-4ivqlsgt	42	4	NATs	NATs	NNP
cord-345211-4ivqlsgt	42	5	for	for	IN
cord-345211-4ivqlsgt	42	6	other	other	JJ
cord-345211-4ivqlsgt	42	7	infectious	infectious	JJ
cord-345211-4ivqlsgt	42	8	diseases	disease	NNS
cord-345211-4ivqlsgt	42	9	,	,	,
cord-345211-4ivqlsgt	42	10	which	which	WDT
cord-345211-4ivqlsgt	42	11	have	have	VBP
cord-345211-4ivqlsgt	42	12	been	be	VBN
cord-345211-4ivqlsgt	42	13	more	more	RBR
cord-345211-4ivqlsgt	42	14	quickly	quickly	RB
cord-345211-4ivqlsgt	42	15	embraced	embrace	VBN
cord-345211-4ivqlsgt	42	16	by	by	IN
cord-345211-4ivqlsgt	42	17	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	42	18	and	and	CC
cord-345211-4ivqlsgt	42	19	clinicians	clinician	NNS
cord-345211-4ivqlsgt	42	20	[	[	-LRB-
cord-345211-4ivqlsgt	42	21	13	13	CD
cord-345211-4ivqlsgt	42	22	]	]	-RRB-
cord-345211-4ivqlsgt	42	23	.	.	.
cord-345211-4ivqlsgt	43	1	A	a	DT
cord-345211-4ivqlsgt	43	2	major	major	JJ
cord-345211-4ivqlsgt	43	3	reason	reason	NN
cord-345211-4ivqlsgt	43	4	for	for	IN
cord-345211-4ivqlsgt	43	5	the	the	DT
cord-345211-4ivqlsgt	43	6	slow	slow	JJ
cord-345211-4ivqlsgt	43	7	uptake	uptake	NN
cord-345211-4ivqlsgt	43	8	and	and	CC
cord-345211-4ivqlsgt	43	9	acceptance	acceptance	NN
cord-345211-4ivqlsgt	43	10	of	of	IN
cord-345211-4ivqlsgt	43	11	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	43	12	NATs	nat	NNS
cord-345211-4ivqlsgt	43	13	has	have	VBZ
cord-345211-4ivqlsgt	43	14	been	be	VBN
cord-345211-4ivqlsgt	43	15	the	the	DT
cord-345211-4ivqlsgt	43	16	lack	lack	NN
cord-345211-4ivqlsgt	43	17	of	of	IN
cord-345211-4ivqlsgt	43	18	commercial	commercial	JJ
cord-345211-4ivqlsgt	43	19	assays	assay	NNS
cord-345211-4ivqlsgt	43	20	.	.	.
cord-345211-4ivqlsgt	44	1	This	this	DT
cord-345211-4ivqlsgt	44	2	situation	situation	NN
cord-345211-4ivqlsgt	44	3	is	be	VBZ
cord-345211-4ivqlsgt	44	4	changing	change	VBG
cord-345211-4ivqlsgt	44	5	rapidly	rapidly	RB
cord-345211-4ivqlsgt	44	6	,	,	,
cord-345211-4ivqlsgt	44	7	undoubtedly	undoubtedly	RB
cord-345211-4ivqlsgt	44	8	spurred	spur	VBN
cord-345211-4ivqlsgt	44	9	on	on	RP
cord-345211-4ivqlsgt	44	10	by	by	IN
cord-345211-4ivqlsgt	44	11	recent	recent	JJ
cord-345211-4ivqlsgt	44	12	outbreaks	outbreak	NNS
cord-345211-4ivqlsgt	44	13	of	of	IN
cord-345211-4ivqlsgt	44	14	global	global	JJ
cord-345211-4ivqlsgt	44	15	concern	concern	NN
cord-345211-4ivqlsgt	44	16	,	,	,
cord-345211-4ivqlsgt	44	17	such	such	JJ
cord-345211-4ivqlsgt	44	18	as	as	IN
cord-345211-4ivqlsgt	44	19	pandemic	pandemic	NN
cord-345211-4ivqlsgt	44	20	influenza	influenza	NN
cord-345211-4ivqlsgt	44	21	,	,	,
cord-345211-4ivqlsgt	44	22	Middle	Middle	NNP
cord-345211-4ivqlsgt	44	23	East	East	NNP
cord-345211-4ivqlsgt	44	24	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	44	25	syndrome	syndrome	NN
cord-345211-4ivqlsgt	44	26	(	(	-LRB-
cord-345211-4ivqlsgt	44	27	MERS	MERS	NNP
cord-345211-4ivqlsgt	44	28	)	)	-RRB-
cord-345211-4ivqlsgt	44	29	,	,	,
cord-345211-4ivqlsgt	44	30	and	and	CC
cord-345211-4ivqlsgt	44	31	Ebola	Ebola	NNP
cord-345211-4ivqlsgt	44	32	[	[	-LRB-
cord-345211-4ivqlsgt	44	33	14	14	CD
cord-345211-4ivqlsgt	44	34	]	]	-RRB-
cord-345211-4ivqlsgt	44	35	[	[	-LRB-
cord-345211-4ivqlsgt	44	36	15	15	CD
cord-345211-4ivqlsgt	44	37	]	]	-RRB-
cord-345211-4ivqlsgt	44	38	[	[	-LRB-
cord-345211-4ivqlsgt	44	39	16	16	CD
cord-345211-4ivqlsgt	44	40	]	]	-RRB-
cord-345211-4ivqlsgt	44	41	.	.	.
cord-345211-4ivqlsgt	45	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	45	2	,	,	,
cord-345211-4ivqlsgt	45	3	the	the	DT
cord-345211-4ivqlsgt	45	4	increased	increase	VBN
cord-345211-4ivqlsgt	45	5	availability	availability	NN
cord-345211-4ivqlsgt	45	6	of	of	IN
cord-345211-4ivqlsgt	45	7	commercial	commercial	JJ
cord-345211-4ivqlsgt	45	8	assays	assay	NNS
cord-345211-4ivqlsgt	45	9	is	be	VBZ
cord-345211-4ivqlsgt	45	10	the	the	DT
cord-345211-4ivqlsgt	45	11	major	major	JJ
cord-345211-4ivqlsgt	45	12	change	change	NN
cord-345211-4ivqlsgt	45	13	in	in	IN
cord-345211-4ivqlsgt	45	14	the	the	DT
cord-345211-4ivqlsgt	45	15	area	area	NN
cord-345211-4ivqlsgt	45	16	since	since	IN
cord-345211-4ivqlsgt	45	17	I	-PRON-	PRP
cord-345211-4ivqlsgt	45	18	first	first	RB
cord-345211-4ivqlsgt	45	19	started	start	VBD
cord-345211-4ivqlsgt	45	20	reviewing	review	VBG
cord-345211-4ivqlsgt	45	21	the	the	DT
cord-345211-4ivqlsgt	45	22	role	role	NN
cord-345211-4ivqlsgt	45	23	of	of	IN
cord-345211-4ivqlsgt	45	24	molecular	molecular	JJ
cord-345211-4ivqlsgt	45	25	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	45	26	in	in	IN
cord-345211-4ivqlsgt	45	27	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	45	28	over	over	IN
cord-345211-4ivqlsgt	45	29	10	10	CD
cord-345211-4ivqlsgt	45	30	years	year	NNS
cord-345211-4ivqlsgt	45	31	ago	ago	RB
cord-345211-4ivqlsgt	45	32	[	[	-LRB-
cord-345211-4ivqlsgt	45	33	17	17	CD
cord-345211-4ivqlsgt	45	34	,	,	,
cord-345211-4ivqlsgt	45	35	18	18	CD
cord-345211-4ivqlsgt	45	36	]	]	-RRB-
cord-345211-4ivqlsgt	45	37	.	.	.
cord-345211-4ivqlsgt	46	1	To	to	IN
cord-345211-4ivqlsgt	46	2	date	date	NN
cord-345211-4ivqlsgt	46	3	,	,	,
cord-345211-4ivqlsgt	46	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	46	5	tests	test	NNS
cord-345211-4ivqlsgt	46	6	for	for	IN
cord-345211-4ivqlsgt	46	7	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	46	8	have	have	VBP
cord-345211-4ivqlsgt	46	9	mainly	mainly	RB
cord-345211-4ivqlsgt	46	10	focused	focus	VBN
cord-345211-4ivqlsgt	46	11	on	on	IN
cord-345211-4ivqlsgt	46	12	detection	detection	NN
cord-345211-4ivqlsgt	46	13	of	of	IN
cord-345211-4ivqlsgt	46	14	specific	specific	JJ
cord-345211-4ivqlsgt	46	15	known	know	VBN
cord-345211-4ivqlsgt	46	16	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	46	17	by	by	IN
cord-345211-4ivqlsgt	46	18	NATs	NATs	NNP
cord-345211-4ivqlsgt	46	19	.	.	.
cord-345211-4ivqlsgt	47	1	NATs	nat	NNS
cord-345211-4ivqlsgt	47	2	have	have	VBP
cord-345211-4ivqlsgt	47	3	several	several	JJ
cord-345211-4ivqlsgt	47	4	advantages	advantage	NNS
cord-345211-4ivqlsgt	47	5	over	over	IN
cord-345211-4ivqlsgt	47	6	other	other	JJ
cord-345211-4ivqlsgt	47	7	existing	exist	VBG
cord-345211-4ivqlsgt	47	8	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	47	9	tools	tool	NNS
cord-345211-4ivqlsgt	47	10	.	.	.
cord-345211-4ivqlsgt	48	1	They	-PRON-	PRP
cord-345211-4ivqlsgt	48	2	potentially	potentially	RB
cord-345211-4ivqlsgt	48	3	detect	detect	VBP
cord-345211-4ivqlsgt	48	4	low	low	JJ
cord-345211-4ivqlsgt	48	5	levels	level	NNS
cord-345211-4ivqlsgt	48	6	of	of	IN
cord-345211-4ivqlsgt	48	7	all	all	RB
cord-345211-4ivqlsgt	48	8	-	-	HYPH
cord-345211-4ivqlsgt	48	9	known	know	VBN
cord-345211-4ivqlsgt	48	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	48	11	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	48	12	in	in	IN
cord-345211-4ivqlsgt	48	13	clinical	clinical	JJ
cord-345211-4ivqlsgt	48	14	specimens	specimen	NNS
cord-345211-4ivqlsgt	48	15	,	,	,
cord-345211-4ivqlsgt	48	16	do	do	VBP
cord-345211-4ivqlsgt	48	17	not	not	RB
cord-345211-4ivqlsgt	48	18	depend	depend	VB
cord-345211-4ivqlsgt	48	19	on	on	IN
cord-345211-4ivqlsgt	48	20	the	the	DT
cord-345211-4ivqlsgt	48	21	viability	viability	NN
cord-345211-4ivqlsgt	48	22	of	of	IN
cord-345211-4ivqlsgt	48	23	the	the	DT
cord-345211-4ivqlsgt	48	24	target	target	NN
cord-345211-4ivqlsgt	48	25	microbe	microbe	NN
cord-345211-4ivqlsgt	48	26	,	,	,
cord-345211-4ivqlsgt	48	27	and	and	CC
cord-345211-4ivqlsgt	48	28	can	can	MD
cord-345211-4ivqlsgt	48	29	provide	provide	VB
cord-345211-4ivqlsgt	48	30	results	result	NNS
cord-345211-4ivqlsgt	48	31	within	within	IN
cord-345211-4ivqlsgt	48	32	a	a	DT
cord-345211-4ivqlsgt	48	33	clinically	clinically	RB
cord-345211-4ivqlsgt	48	34	relevant	relevant	JJ
cord-345211-4ivqlsgt	48	35	time	time	NN
cord-345211-4ivqlsgt	48	36	frame	frame	NN
cord-345211-4ivqlsgt	48	37	.	.	.
cord-345211-4ivqlsgt	49	1	They	-PRON-	PRP
cord-345211-4ivqlsgt	49	2	are	be	VBP
cord-345211-4ivqlsgt	49	3	also	also	RB
cord-345211-4ivqlsgt	49	4	probably	probably	RB
cord-345211-4ivqlsgt	49	5	less	less	RBR
cord-345211-4ivqlsgt	49	6	affected	affect	VBN
cord-345211-4ivqlsgt	49	7	by	by	IN
cord-345211-4ivqlsgt	49	8	previous	previous	JJ
cord-345211-4ivqlsgt	49	9	antimicrobial	antimicrobial	JJ
cord-345211-4ivqlsgt	49	10	therapy	therapy	NN
cord-345211-4ivqlsgt	49	11	than	than	IN
cord-345211-4ivqlsgt	49	12	are	be	VBP
cord-345211-4ivqlsgt	49	13	culturebased	culturebase	VBN
cord-345211-4ivqlsgt	49	14	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	49	15	methods	method	NNS
cord-345211-4ivqlsgt	49	16	.	.	.
cord-345211-4ivqlsgt	50	1	There	there	EX
cord-345211-4ivqlsgt	50	2	are	be	VBP
cord-345211-4ivqlsgt	50	3	now	now	RB
cord-345211-4ivqlsgt	50	4	a	a	DT
cord-345211-4ivqlsgt	50	5	wide	wide	JJ
cord-345211-4ivqlsgt	50	6	variety	variety	NN
cord-345211-4ivqlsgt	50	7	of	of	IN
cord-345211-4ivqlsgt	50	8	user	user	NN
cord-345211-4ivqlsgt	50	9	-	-	HYPH
cord-345211-4ivqlsgt	50	10	friendly	friendly	JJ
cord-345211-4ivqlsgt	50	11	platforms	platform	NNS
cord-345211-4ivqlsgt	50	12	that	that	WDT
cord-345211-4ivqlsgt	50	13	have	have	VBP
cord-345211-4ivqlsgt	50	14	enabled	enable	VBN
cord-345211-4ivqlsgt	50	15	NATs	nat	NNS
cord-345211-4ivqlsgt	50	16	to	to	TO
cord-345211-4ivqlsgt	50	17	be	be	VB
cord-345211-4ivqlsgt	50	18	deployed	deploy	VBN
cord-345211-4ivqlsgt	50	19	in	in	IN
cord-345211-4ivqlsgt	50	20	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	50	21	outside	outside	RB
cord-345211-4ivqlsgt	50	22	of	of	IN
cord-345211-4ivqlsgt	50	23	specialist	specialist	JJ
cord-345211-4ivqlsgt	50	24	tertiary	tertiary	JJ
cord-345211-4ivqlsgt	50	25	referral	referral	NN
cord-345211-4ivqlsgt	50	26	centers	center	NNS
cord-345211-4ivqlsgt	50	27	.	.	.
cord-345211-4ivqlsgt	51	1	Although	although	IN
cord-345211-4ivqlsgt	51	2	NATs	nat	NNS
cord-345211-4ivqlsgt	51	3	have	have	VBP
cord-345211-4ivqlsgt	51	4	mainly	mainly	RB
cord-345211-4ivqlsgt	51	5	focused	focus	VBN
cord-345211-4ivqlsgt	51	6	on	on	IN
cord-345211-4ivqlsgt	51	7	detecting	detect	VBG
cord-345211-4ivqlsgt	51	8	the	the	DT
cord-345211-4ivqlsgt	51	9	presence	presence	NN
cord-345211-4ivqlsgt	51	10	of	of	IN
cord-345211-4ivqlsgt	51	11	a	a	DT
cord-345211-4ivqlsgt	51	12	particular	particular	JJ
cord-345211-4ivqlsgt	51	13	microorganism	microorganism	NN
cord-345211-4ivqlsgt	51	14	,	,	,
cord-345211-4ivqlsgt	51	15	they	-PRON-	PRP
cord-345211-4ivqlsgt	51	16	may	may	MD
cord-345211-4ivqlsgt	51	17	also	also	RB
cord-345211-4ivqlsgt	51	18	provide	provide	VB
cord-345211-4ivqlsgt	51	19	additional	additional	JJ
cord-345211-4ivqlsgt	51	20	information	information	NN
cord-345211-4ivqlsgt	51	21	,	,	,
cord-345211-4ivqlsgt	51	22	such	such	JJ
cord-345211-4ivqlsgt	51	23	as	as	IN
cord-345211-4ivqlsgt	51	24	data	datum	NNS
cord-345211-4ivqlsgt	51	25	on	on	IN
cord-345211-4ivqlsgt	51	26	antimicrobial	antimicrobial	JJ
cord-345211-4ivqlsgt	51	27	resistance	resistance	NN
cord-345211-4ivqlsgt	51	28	and	and	CC
cord-345211-4ivqlsgt	51	29	strain	strain	NN
cord-345211-4ivqlsgt	51	30	typing	typing	NN
cord-345211-4ivqlsgt	51	31	.	.	.
cord-345211-4ivqlsgt	52	1	The	the	DT
cord-345211-4ivqlsgt	52	2	NATs	nat	NNS
cord-345211-4ivqlsgt	52	3	that	that	WDT
cord-345211-4ivqlsgt	52	4	are	be	VBP
cord-345211-4ivqlsgt	52	5	most	most	RBS
cord-345211-4ivqlsgt	52	6	widely	widely	RB
cord-345211-4ivqlsgt	52	7	used	use	VBN
cord-345211-4ivqlsgt	52	8	in	in	IN
cord-345211-4ivqlsgt	52	9	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	52	10	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	52	11	are	be	VBP
cord-345211-4ivqlsgt	52	12	those	those	DT
cord-345211-4ivqlsgt	52	13	that	that	WDT
cord-345211-4ivqlsgt	52	14	detect	detect	VBP
cord-345211-4ivqlsgt	52	15	potential	potential	JJ
cord-345211-4ivqlsgt	52	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	52	17	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	52	18	that	that	WDT
cord-345211-4ivqlsgt	52	19	are	be	VBP
cord-345211-4ivqlsgt	52	20	not	not	RB
cord-345211-4ivqlsgt	52	21	part	part	NN
cord-345211-4ivqlsgt	52	22	of	of	IN
cord-345211-4ivqlsgt	52	23	the	the	DT
cord-345211-4ivqlsgt	52	24	normal	normal	JJ
cord-345211-4ivqlsgt	52	25	flora	flora	NNS
cord-345211-4ivqlsgt	52	26	,	,	,
cord-345211-4ivqlsgt	52	27	namely	namely	RB
cord-345211-4ivqlsgt	52	28	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	52	29	viruses	virus	NNS
cord-345211-4ivqlsgt	52	30	and	and	CC
cord-345211-4ivqlsgt	52	31	selected	select	VBN
cord-345211-4ivqlsgt	52	32	non	non	JJ
cord-345211-4ivqlsgt	52	33	-	-	JJ
cord-345211-4ivqlsgt	52	34	colonizing	colonizing	JJ
cord-345211-4ivqlsgt	52	35	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	52	36	.	.	.
cord-345211-4ivqlsgt	53	1	For	for	IN
cord-345211-4ivqlsgt	53	2	these	these	DT
cord-345211-4ivqlsgt	53	3	microbes	microbe	NNS
cord-345211-4ivqlsgt	53	4	,	,	,
cord-345211-4ivqlsgt	53	5	simply	simply	RB
cord-345211-4ivqlsgt	53	6	detecting	detect	VBG
cord-345211-4ivqlsgt	53	7	their	-PRON-	PRP$
cord-345211-4ivqlsgt	53	8	presence	presence	NN
cord-345211-4ivqlsgt	53	9	in	in	IN
cord-345211-4ivqlsgt	53	10	a	a	DT
cord-345211-4ivqlsgt	53	11	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	53	12	sample	sample	NN
cord-345211-4ivqlsgt	53	13	has	have	VBZ
cord-345211-4ivqlsgt	53	14	been	be	VBN
cord-345211-4ivqlsgt	53	15	regarded	regard	VBN
cord-345211-4ivqlsgt	53	16	as	as	IN
cord-345211-4ivqlsgt	53	17	sufficient	sufficient	JJ
cord-345211-4ivqlsgt	53	18	evidence	evidence	NN
cord-345211-4ivqlsgt	53	19	to	to	TO
cord-345211-4ivqlsgt	53	20	assign	assign	VB
cord-345211-4ivqlsgt	53	21	causation	causation	NN
cord-345211-4ivqlsgt	53	22	.	.	.
cord-345211-4ivqlsgt	54	1	In	in	IN
cord-345211-4ivqlsgt	54	2	contrast	contrast	NN
cord-345211-4ivqlsgt	54	3	,	,	,
cord-345211-4ivqlsgt	54	4	NATs	NATs	NNP
cord-345211-4ivqlsgt	54	5	for	for	IN
cord-345211-4ivqlsgt	54	6	other	other	JJ
cord-345211-4ivqlsgt	54	7	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	54	8	,	,	,
cord-345211-4ivqlsgt	54	9	including	include	VBG
cord-345211-4ivqlsgt	54	10	some	some	DT
cord-345211-4ivqlsgt	54	11	of	of	IN
cord-345211-4ivqlsgt	54	12	the	the	DT
cord-345211-4ivqlsgt	54	13	most	most	RBS
cord-345211-4ivqlsgt	54	14	important	important	JJ
cord-345211-4ivqlsgt	54	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	54	16	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	54	17	,	,	,
cord-345211-4ivqlsgt	54	18	have	have	VBP
cord-345211-4ivqlsgt	54	19	struggled	struggle	VBN
cord-345211-4ivqlsgt	54	20	for	for	IN
cord-345211-4ivqlsgt	54	21	a	a	DT
cord-345211-4ivqlsgt	54	22	defined	define	VBN
cord-345211-4ivqlsgt	54	23	role	role	NN
cord-345211-4ivqlsgt	54	24	outside	outside	IN
cord-345211-4ivqlsgt	54	25	research	research	NN
cord-345211-4ivqlsgt	54	26	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	54	27	.	.	.
cord-345211-4ivqlsgt	55	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	55	2	for	for	IN
cord-345211-4ivqlsgt	55	3	detection	detection	NN
cord-345211-4ivqlsgt	55	4	of	of	IN
cord-345211-4ivqlsgt	55	5	the	the	DT
cord-345211-4ivqlsgt	55	6	following	follow	VBG
cord-345211-4ivqlsgt	55	7	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	55	8	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	55	9	now	now	RB
cord-345211-4ivqlsgt	55	10	have	have	VBP
cord-345211-4ivqlsgt	55	11	established	establish	VBN
cord-345211-4ivqlsgt	55	12	roles	role	NNS
cord-345211-4ivqlsgt	55	13	.	.	.
cord-345211-4ivqlsgt	56	1	NATs	nat	NNS
cord-345211-4ivqlsgt	56	2	have	have	VBP
cord-345211-4ivqlsgt	56	3	revolutionized	revolutionize	VBN
cord-345211-4ivqlsgt	56	4	the	the	DT
cord-345211-4ivqlsgt	56	5	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	56	6	of	of	IN
cord-345211-4ivqlsgt	56	7	viral	viral	JJ
cord-345211-4ivqlsgt	56	8	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	56	9	tract	tract	NN
cord-345211-4ivqlsgt	56	10	infections	infection	NNS
cord-345211-4ivqlsgt	56	11	[	[	-LRB-
cord-345211-4ivqlsgt	56	12	19	19	CD
cord-345211-4ivqlsgt	56	13	,	,	,
cord-345211-4ivqlsgt	56	14	20	20	CD
cord-345211-4ivqlsgt	56	15	]	]	-RRB-
cord-345211-4ivqlsgt	56	16	.	.	.
cord-345211-4ivqlsgt	57	1	With	with	IN
cord-345211-4ivqlsgt	57	2	high	high	JJ
cord-345211-4ivqlsgt	57	3	sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	57	4	and	and	CC
cord-345211-4ivqlsgt	57	5	specificity	specificity	NN
cord-345211-4ivqlsgt	57	6	,	,	,
cord-345211-4ivqlsgt	57	7	rapid	rapid	JJ
cord-345211-4ivqlsgt	57	8	turnaround	turnaround	NN
cord-345211-4ivqlsgt	57	9	time	time	NN
cord-345211-4ivqlsgt	57	10	,	,	,
cord-345211-4ivqlsgt	57	11	and	and	CC
cord-345211-4ivqlsgt	57	12	availability	availability	NN
cord-345211-4ivqlsgt	57	13	as	as	IN
cord-345211-4ivqlsgt	57	14	commercial	commercial	JJ
cord-345211-4ivqlsgt	57	15	assays	assay	NNS
cord-345211-4ivqlsgt	57	16	,	,	,
cord-345211-4ivqlsgt	57	17	NATs	NATs	NNP
cord-345211-4ivqlsgt	57	18	are	be	VBP
cord-345211-4ivqlsgt	57	19	now	now	RB
cord-345211-4ivqlsgt	57	20	the	the	DT
cord-345211-4ivqlsgt	57	21	testing	testing	NN
cord-345211-4ivqlsgt	57	22	method	method	NN
cord-345211-4ivqlsgt	57	23	of	of	IN
cord-345211-4ivqlsgt	57	24	choice	choice	NN
cord-345211-4ivqlsgt	57	25	for	for	IN
cord-345211-4ivqlsgt	57	26	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	57	27	viruses	virus	NNS
cord-345211-4ivqlsgt	57	28	.	.	.
cord-345211-4ivqlsgt	58	1	Respiratory	respiratory	JJ
cord-345211-4ivqlsgt	58	2	viruses	virus	NNS
cord-345211-4ivqlsgt	58	3	commonly	commonly	RB
cord-345211-4ivqlsgt	58	4	detected	detect	VBN
cord-345211-4ivqlsgt	58	5	by	by	IN
cord-345211-4ivqlsgt	58	6	NATs	NATs	NNP
cord-345211-4ivqlsgt	58	7	,	,	,
cord-345211-4ivqlsgt	58	8	often	often	RB
cord-345211-4ivqlsgt	58	9	in	in	IN
cord-345211-4ivqlsgt	58	10	large	large	JJ
cord-345211-4ivqlsgt	58	11	multiplex	multiplex	JJ
cord-345211-4ivqlsgt	58	12	panels	panel	NNS
cord-345211-4ivqlsgt	58	13	,	,	,
cord-345211-4ivqlsgt	58	14	include	include	VBP
cord-345211-4ivqlsgt	58	15	influenza	influenza	NN
cord-345211-4ivqlsgt	58	16	A	a	NN
cord-345211-4ivqlsgt	58	17	and	and	CC
cord-345211-4ivqlsgt	58	18	B	b	NN
cord-345211-4ivqlsgt	58	19	viruses	virus	NNS
cord-345211-4ivqlsgt	58	20	,	,	,
cord-345211-4ivqlsgt	58	21	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	58	22	syncytial	syncytial	JJ
cord-345211-4ivqlsgt	58	23	virus	virus	NN
cord-345211-4ivqlsgt	58	24	,	,	,
cord-345211-4ivqlsgt	58	25	parainfluenza	parainfluenza	NNP
cord-345211-4ivqlsgt	58	26	viruses	virus	NNS
cord-345211-4ivqlsgt	58	27	,	,	,
cord-345211-4ivqlsgt	58	28	human	human	JJ
cord-345211-4ivqlsgt	58	29	metapneumovirus	metapneumovirus	NNP
cord-345211-4ivqlsgt	58	30	,	,	,
cord-345211-4ivqlsgt	58	31	human	human	JJ
cord-345211-4ivqlsgt	58	32	rhinoviruses	rhinovirus	NNS
cord-345211-4ivqlsgt	58	33	,	,	,
cord-345211-4ivqlsgt	58	34	enteroviruses	enterovirus	NNS
cord-345211-4ivqlsgt	58	35	,	,	,
cord-345211-4ivqlsgt	58	36	adenoviruses	adenovirus	NNS
cord-345211-4ivqlsgt	58	37	,	,	,
cord-345211-4ivqlsgt	58	38	human	human	JJ
cord-345211-4ivqlsgt	58	39	bocavirus	bocavirus	NN
cord-345211-4ivqlsgt	58	40	,	,	,
cord-345211-4ivqlsgt	58	41	and	and	CC
cord-345211-4ivqlsgt	58	42	several	several	JJ
cord-345211-4ivqlsgt	58	43	coronaviruses	coronaviruse	NNS
cord-345211-4ivqlsgt	58	44	(	(	-LRB-
cord-345211-4ivqlsgt	58	45	OC43	OC43	NNP
cord-345211-4ivqlsgt	58	46	,	,	,
cord-345211-4ivqlsgt	58	47	229E	229e	CD
cord-345211-4ivqlsgt	58	48	,	,	,
cord-345211-4ivqlsgt	58	49	NL63	NL63	NNP
cord-345211-4ivqlsgt	58	50	,	,	,
cord-345211-4ivqlsgt	58	51	and	and	CC
cord-345211-4ivqlsgt	58	52	HKU1	HKU1	NNP
cord-345211-4ivqlsgt	58	53	)	)	-RRB-
cord-345211-4ivqlsgt	58	54	.	.	.
cord-345211-4ivqlsgt	59	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	59	2	are	be	VBP
cord-345211-4ivqlsgt	59	3	also	also	RB
cord-345211-4ivqlsgt	59	4	established	establish	VBN
cord-345211-4ivqlsgt	59	5	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	59	6	tools	tool	NNS
cord-345211-4ivqlsgt	59	7	for	for	IN
cord-345211-4ivqlsgt	59	8	detection	detection	NN
cord-345211-4ivqlsgt	59	9	of	of	IN
cord-345211-4ivqlsgt	59	10	severe	severe	JJ
cord-345211-4ivqlsgt	59	11	acute	acute	JJ
cord-345211-4ivqlsgt	59	12	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	59	13	syndromecoronavirus	syndromecoronavirus	NN
cord-345211-4ivqlsgt	59	14	and	and	CC
cord-345211-4ivqlsgt	59	15	MERS	MERS	NNP
cord-345211-4ivqlsgt	59	16	-	-	HYPH
cord-345211-4ivqlsgt	59	17	coronavirus	coronavirus	NN
cord-345211-4ivqlsgt	59	18	[	[	-LRB-
cord-345211-4ivqlsgt	59	19	16	16	CD
cord-345211-4ivqlsgt	59	20	,	,	,
cord-345211-4ivqlsgt	59	21	20	20	CD
cord-345211-4ivqlsgt	59	22	]	]	-RRB-
cord-345211-4ivqlsgt	59	23	.	.	.
cord-345211-4ivqlsgt	60	1	In	in	IN
cord-345211-4ivqlsgt	60	2	the	the	DT
cord-345211-4ivqlsgt	60	3	context	context	NN
cord-345211-4ivqlsgt	60	4	of	of	IN
cord-345211-4ivqlsgt	60	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	60	6	,	,	,
cord-345211-4ivqlsgt	60	7	the	the	DT
cord-345211-4ivqlsgt	60	8	detection	detection	NN
cord-345211-4ivqlsgt	60	9	of	of	IN
cord-345211-4ivqlsgt	60	10	a	a	DT
cord-345211-4ivqlsgt	60	11	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	60	12	virus	virus	NN
cord-345211-4ivqlsgt	60	13	in	in	IN
cord-345211-4ivqlsgt	60	14	an	an	DT
cord-345211-4ivqlsgt	60	15	upper	upper	JJ
cord-345211-4ivqlsgt	60	16	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	60	17	specimen	specimen	NN
cord-345211-4ivqlsgt	60	18	by	by	IN
cord-345211-4ivqlsgt	60	19	a	a	DT
cord-345211-4ivqlsgt	60	20	NAT	NAT	NNP
cord-345211-4ivqlsgt	60	21	has	have	VBZ
cord-345211-4ivqlsgt	60	22	been	be	VBN
cord-345211-4ivqlsgt	60	23	regarded	regard	VBN
cord-345211-4ivqlsgt	60	24	as	as	IN
cord-345211-4ivqlsgt	60	25	sufficient	sufficient	JJ
cord-345211-4ivqlsgt	60	26	to	to	TO
cord-345211-4ivqlsgt	60	27	assign	assign	VB
cord-345211-4ivqlsgt	60	28	causation	causation	NN
cord-345211-4ivqlsgt	60	29	in	in	IN
cord-345211-4ivqlsgt	60	30	both	both	DT
cord-345211-4ivqlsgt	60	31	children	child	NNS
cord-345211-4ivqlsgt	60	32	and	and	CC
cord-345211-4ivqlsgt	60	33	adults	adult	NNS
cord-345211-4ivqlsgt	60	34	[	[	-LRB-
cord-345211-4ivqlsgt	60	35	21	21	CD
cord-345211-4ivqlsgt	60	36	]	]	-RRB-
cord-345211-4ivqlsgt	60	37	.	.	.
cord-345211-4ivqlsgt	61	1	However	however	RB
cord-345211-4ivqlsgt	61	2	,	,	,
cord-345211-4ivqlsgt	61	3	this	this	DT
cord-345211-4ivqlsgt	61	4	assumption	assumption	NN
cord-345211-4ivqlsgt	61	5	is	be	VBZ
cord-345211-4ivqlsgt	61	6	not	not	RB
cord-345211-4ivqlsgt	61	7	always	always	RB
cord-345211-4ivqlsgt	61	8	reliable	reliable	JJ
cord-345211-4ivqlsgt	61	9	.	.	.
cord-345211-4ivqlsgt	62	1	There	there	EX
cord-345211-4ivqlsgt	62	2	is	be	VBZ
cord-345211-4ivqlsgt	62	3	still	still	RB
cord-345211-4ivqlsgt	62	4	debate	debate	NN
cord-345211-4ivqlsgt	62	5	about	about	IN
cord-345211-4ivqlsgt	62	6	the	the	DT
cord-345211-4ivqlsgt	62	7	exact	exact	JJ
cord-345211-4ivqlsgt	62	8	role	role	NN
cord-345211-4ivqlsgt	62	9	(	(	-LRB-
cord-345211-4ivqlsgt	62	10	if	if	IN
cord-345211-4ivqlsgt	62	11	any	any	DT
cord-345211-4ivqlsgt	62	12	)	)	-RRB-
cord-345211-4ivqlsgt	62	13	of	of	IN
cord-345211-4ivqlsgt	62	14	some	some	DT
cord-345211-4ivqlsgt	62	15	viruses	virus	NNS
cord-345211-4ivqlsgt	62	16	in	in	IN
cord-345211-4ivqlsgt	62	17	the	the	DT
cord-345211-4ivqlsgt	62	18	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	62	19	of	of	IN
cord-345211-4ivqlsgt	62	20	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	62	21	,	,	,
cord-345211-4ivqlsgt	62	22	including	include	VBG
cord-345211-4ivqlsgt	62	23	human	human	JJ
cord-345211-4ivqlsgt	62	24	rhinoviruses	rhinovirus	NNS
cord-345211-4ivqlsgt	62	25	and	and	CC
cord-345211-4ivqlsgt	62	26	human	human	JJ
cord-345211-4ivqlsgt	62	27	bocavirus	bocavirus	NN
cord-345211-4ivqlsgt	62	28	[	[	-LRB-
cord-345211-4ivqlsgt	62	29	22	22	CD
cord-345211-4ivqlsgt	62	30	]	]	-RRB-
cord-345211-4ivqlsgt	62	31	.	.	.
cord-345211-4ivqlsgt	63	1	This	this	DT
cord-345211-4ivqlsgt	63	2	has	have	VBZ
cord-345211-4ivqlsgt	63	3	led	lead	VBN
cord-345211-4ivqlsgt	63	4	some	some	DT
cord-345211-4ivqlsgt	63	5	to	to	TO
cord-345211-4ivqlsgt	63	6	question	question	VB
cord-345211-4ivqlsgt	63	7	the	the	DT
cord-345211-4ivqlsgt	63	8	wisdom	wisdom	NN
cord-345211-4ivqlsgt	63	9	of	of	IN
cord-345211-4ivqlsgt	63	10	using	use	VBG
cord-345211-4ivqlsgt	63	11	large	large	JJ
cord-345211-4ivqlsgt	63	12	multiplex	multiplex	JJ
cord-345211-4ivqlsgt	63	13	NAT	NAT	NNP
cord-345211-4ivqlsgt	63	14	panels	panel	NNS
cord-345211-4ivqlsgt	63	15	as	as	IN
cord-345211-4ivqlsgt	63	16	first	first	JJ
cord-345211-4ivqlsgt	63	17	-	-	HYPH
cord-345211-4ivqlsgt	63	18	line	line	NN
cord-345211-4ivqlsgt	63	19	tests	test	NNS
cord-345211-4ivqlsgt	63	20	for	for	IN
cord-345211-4ivqlsgt	63	21	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	63	22	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	63	23	given	give	VBN
cord-345211-4ivqlsgt	63	24	potential	potential	JJ
cord-345211-4ivqlsgt	63	25	problems	problem	NNS
cord-345211-4ivqlsgt	63	26	with	with	IN
cord-345211-4ivqlsgt	63	27	interpretation	interpretation	NN
cord-345211-4ivqlsgt	63	28	of	of	IN
cord-345211-4ivqlsgt	63	29	positive	positive	JJ
cord-345211-4ivqlsgt	63	30	results	result	NNS
cord-345211-4ivqlsgt	63	31	[	[	-LRB-
cord-345211-4ivqlsgt	63	32	23	23	CD
cord-345211-4ivqlsgt	63	33	]	]	-RRB-
cord-345211-4ivqlsgt	63	34	.	.	.
cord-345211-4ivqlsgt	64	1	In	in	IN
cord-345211-4ivqlsgt	64	2	addition	addition	NN
cord-345211-4ivqlsgt	64	3	,	,	,
cord-345211-4ivqlsgt	64	4	when	when	WRB
cord-345211-4ivqlsgt	64	5	control	control	NN
cord-345211-4ivqlsgt	64	6	groups	group	NNS
cord-345211-4ivqlsgt	64	7	are	be	VBP
cord-345211-4ivqlsgt	64	8	used	use	VBN
cord-345211-4ivqlsgt	64	9	in	in	IN
cord-345211-4ivqlsgt	64	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	64	11	etiology	etiology	NN
cord-345211-4ivqlsgt	64	12	studies	study	NNS
cord-345211-4ivqlsgt	64	13	,	,	,
cord-345211-4ivqlsgt	64	14	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	64	15	viruses	virus	NNS
cord-345211-4ivqlsgt	64	16	are	be	VBP
cord-345211-4ivqlsgt	64	17	often	often	RB
cord-345211-4ivqlsgt	64	18	detected	detect	VBN
cord-345211-4ivqlsgt	64	19	in	in	IN
cord-345211-4ivqlsgt	64	20	a	a	DT
cord-345211-4ivqlsgt	64	21	similar	similar	JJ
cord-345211-4ivqlsgt	64	22	proportion	proportion	NN
cord-345211-4ivqlsgt	64	23	of	of	IN
cord-345211-4ivqlsgt	64	24	both	both	DT
cord-345211-4ivqlsgt	64	25	subjects	subject	NNS
cord-345211-4ivqlsgt	64	26	with	with	IN
cord-345211-4ivqlsgt	64	27	and	and	CC
cord-345211-4ivqlsgt	64	28	without	without	IN
cord-345211-4ivqlsgt	64	29	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	64	30	,	,	,
cord-345211-4ivqlsgt	64	31	especially	especially	RB
cord-345211-4ivqlsgt	64	32	in	in	IN
cord-345211-4ivqlsgt	64	33	children	child	NNS
cord-345211-4ivqlsgt	64	34	[	[	-LRB-
cord-345211-4ivqlsgt	64	35	24	24	CD
cord-345211-4ivqlsgt	64	36	,	,	,
cord-345211-4ivqlsgt	64	37	25	25	CD
cord-345211-4ivqlsgt	64	38	]	]	-RRB-
cord-345211-4ivqlsgt	64	39	.	.	.
cord-345211-4ivqlsgt	65	1	These	these	DT
cord-345211-4ivqlsgt	65	2	findings	finding	NNS
cord-345211-4ivqlsgt	65	3	vary	vary	VBP
cord-345211-4ivqlsgt	65	4	by	by	IN
cord-345211-4ivqlsgt	65	5	specific	specific	JJ
cord-345211-4ivqlsgt	65	6	virus	virus	NN
cord-345211-4ivqlsgt	65	7	,	,	,
cord-345211-4ivqlsgt	65	8	with	with	IN
cord-345211-4ivqlsgt	65	9	influenza	influenza	NN
cord-345211-4ivqlsgt	65	10	A	a	NN
cord-345211-4ivqlsgt	65	11	and	and	CC
cord-345211-4ivqlsgt	65	12	B	b	NN
cord-345211-4ivqlsgt	65	13	viruses	virus	NNS
cord-345211-4ivqlsgt	65	14	,	,	,
cord-345211-4ivqlsgt	65	15	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	65	16	syncytial	syncytial	JJ
cord-345211-4ivqlsgt	65	17	virus	virus	NN
cord-345211-4ivqlsgt	65	18	,	,	,
cord-345211-4ivqlsgt	65	19	and	and	CC
cord-345211-4ivqlsgt	65	20	human	human	NN
cord-345211-4ivqlsgt	65	21	metapneumovirus	metapneumovirus	NN
cord-345211-4ivqlsgt	65	22	being	be	VBG
cord-345211-4ivqlsgt	65	23	typically	typically	RB
cord-345211-4ivqlsgt	65	24	detected	detect	VBN
cord-345211-4ivqlsgt	65	25	in	in	IN
cord-345211-4ivqlsgt	65	26	a	a	DT
cord-345211-4ivqlsgt	65	27	significantly	significantly	RB
cord-345211-4ivqlsgt	65	28	higher	high	JJR
cord-345211-4ivqlsgt	65	29	proportion	proportion	NN
cord-345211-4ivqlsgt	65	30	of	of	IN
cord-345211-4ivqlsgt	65	31	cases	case	NNS
cord-345211-4ivqlsgt	65	32	with	with	IN
cord-345211-4ivqlsgt	65	33	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	65	34	than	than	IN
cord-345211-4ivqlsgt	65	35	controls	control	NNS
cord-345211-4ivqlsgt	65	36	.	.	.
cord-345211-4ivqlsgt	66	1	Environmental	environmental	JJ
cord-345211-4ivqlsgt	66	2	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	66	3	of	of	IN
cord-345211-4ivqlsgt	66	4	the	the	DT
cord-345211-4ivqlsgt	66	5	genus	genus	NN
cord-345211-4ivqlsgt	66	6	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	66	7	are	be	VBP
cord-345211-4ivqlsgt	66	8	the	the	DT
cord-345211-4ivqlsgt	66	9	cause	cause	NN
cord-345211-4ivqlsgt	66	10	of	of	IN
cord-345211-4ivqlsgt	66	11	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	66	12	'	'	POS
cord-345211-4ivqlsgt	66	13	disease	disease	NN
cord-345211-4ivqlsgt	66	14	,	,	,
cord-345211-4ivqlsgt	66	15	a	a	DT
cord-345211-4ivqlsgt	66	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	66	17	that	that	WDT
cord-345211-4ivqlsgt	66	18	requires	require	VBZ
cord-345211-4ivqlsgt	66	19	specific	specific	JJ
cord-345211-4ivqlsgt	66	20	antimicrobial	antimicrobial	JJ
cord-345211-4ivqlsgt	66	21	treatment	treatment	NN
cord-345211-4ivqlsgt	66	22	and	and	CC
cord-345211-4ivqlsgt	66	23	is	be	VBZ
cord-345211-4ivqlsgt	66	24	often	often	RB
cord-345211-4ivqlsgt	66	25	associated	associate	VBN
cord-345211-4ivqlsgt	66	26	with	with	IN
cord-345211-4ivqlsgt	66	27	outbreaks	outbreak	NNS
cord-345211-4ivqlsgt	66	28	[	[	-LRB-
cord-345211-4ivqlsgt	66	29	26	26	CD
cord-345211-4ivqlsgt	66	30	]	]	-RRB-
cord-345211-4ivqlsgt	66	31	.	.	.
cord-345211-4ivqlsgt	67	1	Of	of	IN
cord-345211-4ivqlsgt	67	2	the	the	DT
cord-345211-4ivqlsgt	67	3	many	many	JJ
cord-345211-4ivqlsgt	67	4	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	67	5	species	specie	NNS
cord-345211-4ivqlsgt	67	6	that	that	WDT
cord-345211-4ivqlsgt	67	7	can	can	MD
cord-345211-4ivqlsgt	67	8	cause	cause	VB
cord-345211-4ivqlsgt	67	9	human	human	JJ
cord-345211-4ivqlsgt	67	10	infection	infection	NN
cord-345211-4ivqlsgt	67	11	,	,	,
cord-345211-4ivqlsgt	67	12	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	67	13	pneumophila	pneumophila	NN
cord-345211-4ivqlsgt	67	14	is	be	VBZ
cord-345211-4ivqlsgt	67	15	the	the	DT
cord-345211-4ivqlsgt	67	16	most	most	RBS
cord-345211-4ivqlsgt	67	17	common	common	JJ
cord-345211-4ivqlsgt	67	18	cause	cause	NN
cord-345211-4ivqlsgt	67	19	globally	globally	RB
cord-345211-4ivqlsgt	67	20	,	,	,
cord-345211-4ivqlsgt	67	21	with	with	IN
cord-345211-4ivqlsgt	67	22	infection	infection	NN
cord-345211-4ivqlsgt	67	23	usually	usually	RB
cord-345211-4ivqlsgt	67	24	acquired	acquire	VBN
cord-345211-4ivqlsgt	67	25	from	from	IN
cord-345211-4ivqlsgt	67	26	water	water	NN
cord-345211-4ivqlsgt	67	27	sources	source	NNS
cord-345211-4ivqlsgt	67	28	.	.	.
cord-345211-4ivqlsgt	68	1	Other	other	JJ
cord-345211-4ivqlsgt	68	2	species	specie	NNS
cord-345211-4ivqlsgt	68	3	predominate	predominate	VBP
cord-345211-4ivqlsgt	68	4	in	in	IN
cord-345211-4ivqlsgt	68	5	some	some	DT
cord-345211-4ivqlsgt	68	6	geographic	geographic	JJ
cord-345211-4ivqlsgt	68	7	locations	location	NNS
cord-345211-4ivqlsgt	68	8	,	,	,
cord-345211-4ivqlsgt	68	9	particularly	particularly	RB
cord-345211-4ivqlsgt	68	10	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	68	11	longbeachae	longbeachae	NN
cord-345211-4ivqlsgt	68	12	which	which	WDT
cord-345211-4ivqlsgt	68	13	is	be	VBZ
cord-345211-4ivqlsgt	68	14	an	an	DT
cord-345211-4ivqlsgt	68	15	inhabitant	inhabitant	NN
cord-345211-4ivqlsgt	68	16	of	of	IN
cord-345211-4ivqlsgt	68	17	soil	soil	NN
cord-345211-4ivqlsgt	68	18	and	and	CC
cord-345211-4ivqlsgt	68	19	compost	compost	NN
cord-345211-4ivqlsgt	68	20	.	.	.
cord-345211-4ivqlsgt	69	1	There	there	EX
cord-345211-4ivqlsgt	69	2	is	be	VBZ
cord-345211-4ivqlsgt	69	3	no	no	DT
cord-345211-4ivqlsgt	69	4	human	human	NN
cord-345211-4ivqlsgt	69	5	-	-	HYPH
cord-345211-4ivqlsgt	69	6	to	to	IN
cord-345211-4ivqlsgt	69	7	-	-	HYPH
cord-345211-4ivqlsgt	69	8	human	human	JJ
cord-345211-4ivqlsgt	69	9	spread	spread	NN
cord-345211-4ivqlsgt	69	10	of	of	IN
cord-345211-4ivqlsgt	69	11	Legionnaires	Legionnaires	NNPS
cord-345211-4ivqlsgt	69	12	'	'	POS
cord-345211-4ivqlsgt	69	13	disease	disease	NN
cord-345211-4ivqlsgt	69	14	,	,	,
cord-345211-4ivqlsgt	69	15	and	and	CC
cord-345211-4ivqlsgt	69	16	human	human	JJ
cord-345211-4ivqlsgt	69	17	infection	infection	NN
cord-345211-4ivqlsgt	69	18	follows	follow	VBZ
cord-345211-4ivqlsgt	69	19	environmental	environmental	JJ
cord-345211-4ivqlsgt	69	20	exposure	exposure	NN
cord-345211-4ivqlsgt	69	21	to	to	IN
cord-345211-4ivqlsgt	69	22	the	the	DT
cord-345211-4ivqlsgt	69	23	causative	causative	JJ
cord-345211-4ivqlsgt	69	24	microorganism	microorganism	NN
cord-345211-4ivqlsgt	69	25	.	.	.
cord-345211-4ivqlsgt	70	1	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	70	2	spp	spp	NNS
cord-345211-4ivqlsgt	70	3	.	.	.
cord-345211-4ivqlsgt	71	1	are	be	VBP
cord-345211-4ivqlsgt	71	2	fastidious	fastidious	JJ
cord-345211-4ivqlsgt	71	3	organisms	organism	NNS
cord-345211-4ivqlsgt	71	4	and	and	CC
cord-345211-4ivqlsgt	71	5	the	the	DT
cord-345211-4ivqlsgt	71	6	traditional	traditional	JJ
cord-345211-4ivqlsgt	71	7	reliance	reliance	NN
cord-345211-4ivqlsgt	71	8	on	on	IN
cord-345211-4ivqlsgt	71	9	culture	culture	NN
cord-345211-4ivqlsgt	71	10	,	,	,
cord-345211-4ivqlsgt	71	11	serology	serology	NN
cord-345211-4ivqlsgt	71	12	,	,	,
cord-345211-4ivqlsgt	71	13	and	and	CC
cord-345211-4ivqlsgt	71	14	urinary	urinary	JJ
cord-345211-4ivqlsgt	71	15	antigen	antigen	NN
cord-345211-4ivqlsgt	71	16	tests	test	NNS
cord-345211-4ivqlsgt	71	17	has	have	VBZ
cord-345211-4ivqlsgt	71	18	led	lead	VBN
cord-345211-4ivqlsgt	71	19	to	to	IN
cord-345211-4ivqlsgt	71	20	underdiagnosis	underdiagnosis	NN
cord-345211-4ivqlsgt	71	21	of	of	IN
cord-345211-4ivqlsgt	71	22	Legionnaires	Legionnaires	NNPS
cord-345211-4ivqlsgt	71	23	'	'	POS
cord-345211-4ivqlsgt	71	24	disease	disease	NN
cord-345211-4ivqlsgt	71	25	globally	globally	RB
cord-345211-4ivqlsgt	71	26	[	[	-LRB-
cord-345211-4ivqlsgt	71	27	27	27	CD
cord-345211-4ivqlsgt	71	28	]	]	-RRB-
cord-345211-4ivqlsgt	71	29	.	.	.
cord-345211-4ivqlsgt	72	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	72	2	,	,	,
cord-345211-4ivqlsgt	72	3	the	the	DT
cord-345211-4ivqlsgt	72	4	almost	almost	RB
cord-345211-4ivqlsgt	72	5	sole	sole	JJ
cord-345211-4ivqlsgt	72	6	reliance	reliance	NN
cord-345211-4ivqlsgt	72	7	on	on	IN
cord-345211-4ivqlsgt	72	8	the	the	DT
cord-345211-4ivqlsgt	72	9	urinary	urinary	JJ
cord-345211-4ivqlsgt	72	10	antigen	antigen	NN
cord-345211-4ivqlsgt	72	11	test	test	NN
cord-345211-4ivqlsgt	72	12	,	,	,
cord-345211-4ivqlsgt	72	13	which	which	WDT
cord-345211-4ivqlsgt	72	14	can	can	MD
cord-345211-4ivqlsgt	72	15	only	only	RB
cord-345211-4ivqlsgt	72	16	detect	detect	VB
cord-345211-4ivqlsgt	72	17	L.	L.	NNP
cord-345211-4ivqlsgt	72	18	pneumophila	pneumophila	NN
cord-345211-4ivqlsgt	72	19	serogroup	serogroup	NNP
cord-345211-4ivqlsgt	72	20	1	1	CD
cord-345211-4ivqlsgt	72	21	,	,	,
cord-345211-4ivqlsgt	72	22	in	in	IN
cord-345211-4ivqlsgt	72	23	some	some	DT
cord-345211-4ivqlsgt	72	24	parts	part	NNS
cord-345211-4ivqlsgt	72	25	of	of	IN
cord-345211-4ivqlsgt	72	26	the	the	DT
cord-345211-4ivqlsgt	72	27	world	world	NN
cord-345211-4ivqlsgt	72	28	has	have	VBZ
cord-345211-4ivqlsgt	72	29	created	create	VBN
cord-345211-4ivqlsgt	72	30	a	a	DT
cord-345211-4ivqlsgt	72	31	'	'	``
cord-345211-4ivqlsgt	72	32	blind	blind	JJ
cord-345211-4ivqlsgt	72	33	spot	spot	NN
cord-345211-4ivqlsgt	72	34	'	'	''
cord-345211-4ivqlsgt	72	35	for	for	IN
cord-345211-4ivqlsgt	72	36	Legionnaires	Legionnaires	NNPS
cord-345211-4ivqlsgt	72	37	'	'	POS
cord-345211-4ivqlsgt	72	38	disease	disease	NN
cord-345211-4ivqlsgt	72	39	caused	cause	VBN
cord-345211-4ivqlsgt	72	40	by	by	IN
cord-345211-4ivqlsgt	72	41	other	other	JJ
cord-345211-4ivqlsgt	72	42	species	specie	NNS
cord-345211-4ivqlsgt	72	43	and	and	CC
cord-345211-4ivqlsgt	72	44	serogroups	serogroup	NNS
cord-345211-4ivqlsgt	72	45	[	[	-LRB-
cord-345211-4ivqlsgt	72	46	27	27	CD
cord-345211-4ivqlsgt	72	47	]	]	-RRB-
cord-345211-4ivqlsgt	72	48	.	.	.
cord-345211-4ivqlsgt	73	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	73	2	have	have	VBP
cord-345211-4ivqlsgt	73	3	long	long	RB
cord-345211-4ivqlsgt	73	4	been	be	VBN
cord-345211-4ivqlsgt	73	5	used	use	VBN
cord-345211-4ivqlsgt	73	6	to	to	TO
cord-345211-4ivqlsgt	73	7	detect	detect	VB
cord-345211-4ivqlsgt	73	8	Legionella	legionella	NN
cord-345211-4ivqlsgt	73	9	infection	infection	NN
cord-345211-4ivqlsgt	73	10	[	[	-LRB-
cord-345211-4ivqlsgt	73	11	27	27	CD
cord-345211-4ivqlsgt	73	12	]	]	-RRB-
cord-345211-4ivqlsgt	73	13	and	and	CC
cord-345211-4ivqlsgt	73	14	are	be	VBP
cord-345211-4ivqlsgt	73	15	well	well	RB
cord-345211-4ivqlsgt	73	16	-	-	HYPH
cord-345211-4ivqlsgt	73	17	suited	suit	VBN
cord-345211-4ivqlsgt	73	18	for	for	IN
cord-345211-4ivqlsgt	73	19	this	this	DT
cord-345211-4ivqlsgt	73	20	purpose	purpose	NN
cord-345211-4ivqlsgt	73	21	.	.	.
cord-345211-4ivqlsgt	74	1	Legionella	legionella	NN
cord-345211-4ivqlsgt	74	2	are	be	VBP
cord-345211-4ivqlsgt	74	3	not	not	RB
cord-345211-4ivqlsgt	74	4	regarded	regard	VBN
cord-345211-4ivqlsgt	74	5	as	as	IN
cord-345211-4ivqlsgt	74	6	human	human	JJ
cord-345211-4ivqlsgt	74	7	colonizers	colonizer	NNS
cord-345211-4ivqlsgt	74	8	[	[	-LRB-
cord-345211-4ivqlsgt	74	9	28	28	CD
cord-345211-4ivqlsgt	74	10	]	]	-RRB-
cord-345211-4ivqlsgt	74	11	,	,	,
cord-345211-4ivqlsgt	74	12	and	and	CC
cord-345211-4ivqlsgt	74	13	the	the	DT
cord-345211-4ivqlsgt	74	14	detection	detection	NN
cord-345211-4ivqlsgt	74	15	of	of	IN
cord-345211-4ivqlsgt	74	16	any	any	DT
cord-345211-4ivqlsgt	74	17	amount	amount	NN
cord-345211-4ivqlsgt	74	18	of	of	IN
cord-345211-4ivqlsgt	74	19	legionellae	legionellae	NNS
cord-345211-4ivqlsgt	74	20	in	in	IN
cord-345211-4ivqlsgt	74	21	a	a	DT
cord-345211-4ivqlsgt	74	22	clinical	clinical	JJ
cord-345211-4ivqlsgt	74	23	specimen	specimen	NN
cord-345211-4ivqlsgt	74	24	is	be	VBZ
cord-345211-4ivqlsgt	74	25	regarded	regard	VBN
cord-345211-4ivqlsgt	74	26	as	as	RB
cord-345211-4ivqlsgt	74	27	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	74	28	for	for	IN
cord-345211-4ivqlsgt	74	29	infection	infection	NN
cord-345211-4ivqlsgt	74	30	,	,	,
cord-345211-4ivqlsgt	74	31	assuming	assume	VBG
cord-345211-4ivqlsgt	74	32	contamination	contamination	NN
cord-345211-4ivqlsgt	74	33	has	have	VBZ
cord-345211-4ivqlsgt	74	34	not	not	RB
cord-345211-4ivqlsgt	74	35	occurred	occur	VBN
cord-345211-4ivqlsgt	74	36	during	during	IN
cord-345211-4ivqlsgt	74	37	the	the	DT
cord-345211-4ivqlsgt	74	38	testing	testing	NN
cord-345211-4ivqlsgt	74	39	process	process	NN
cord-345211-4ivqlsgt	74	40	.	.	.
cord-345211-4ivqlsgt	75	1	Furthermore	furthermore	RB
cord-345211-4ivqlsgt	75	2	,	,	,
cord-345211-4ivqlsgt	75	3	all	all	DT
cord-345211-4ivqlsgt	75	4	species	specie	NNS
cord-345211-4ivqlsgt	75	5	and	and	CC
cord-345211-4ivqlsgt	75	6	serogroups	serogroup	NNS
cord-345211-4ivqlsgt	75	7	can	can	MD
cord-345211-4ivqlsgt	75	8	be	be	VB
cord-345211-4ivqlsgt	75	9	detected	detect	VBN
cord-345211-4ivqlsgt	75	10	.	.	.
cord-345211-4ivqlsgt	76	1	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	76	2	DNA	DNA	NNP
cord-345211-4ivqlsgt	76	3	has	have	VBZ
cord-345211-4ivqlsgt	76	4	been	be	VBN
cord-345211-4ivqlsgt	76	5	detected	detect	VBN
cord-345211-4ivqlsgt	76	6	in	in	IN
cord-345211-4ivqlsgt	76	7	both	both	CC
cord-345211-4ivqlsgt	76	8	upper	upper	JJ
cord-345211-4ivqlsgt	76	9	and	and	CC
cord-345211-4ivqlsgt	76	10	lower	low	JJR
cord-345211-4ivqlsgt	76	11	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	76	12	samples	sample	NNS
cord-345211-4ivqlsgt	76	13	,	,	,
cord-345211-4ivqlsgt	76	14	urine	urine	NN
cord-345211-4ivqlsgt	76	15	,	,	,
cord-345211-4ivqlsgt	76	16	and	and	CC
cord-345211-4ivqlsgt	76	17	blood	blood	NN
cord-345211-4ivqlsgt	76	18	from	from	IN
cord-345211-4ivqlsgt	76	19	patients	patient	NNS
cord-345211-4ivqlsgt	76	20	with	with	IN
cord-345211-4ivqlsgt	76	21	Legionnaires	Legionnaires	NNPS
cord-345211-4ivqlsgt	76	22	'	'	POS
cord-345211-4ivqlsgt	76	23	disease	disease	NN
cord-345211-4ivqlsgt	76	24	[	[	-LRB-
cord-345211-4ivqlsgt	76	25	29	29	CD
cord-345211-4ivqlsgt	76	26	]	]	-RRB-
cord-345211-4ivqlsgt	76	27	[	[	-LRB-
cord-345211-4ivqlsgt	76	28	30	30	CD
cord-345211-4ivqlsgt	76	29	]	]	-RRB-
cord-345211-4ivqlsgt	76	30	[	[	-LRB-
cord-345211-4ivqlsgt	76	31	31	31	CD
cord-345211-4ivqlsgt	76	32	]	]	-RRB-
cord-345211-4ivqlsgt	77	1	[	[	-LRB-
cord-345211-4ivqlsgt	77	2	32	32	CD
cord-345211-4ivqlsgt	77	3	]	]	-RRB-
cord-345211-4ivqlsgt	77	4	[	[	-LRB-
cord-345211-4ivqlsgt	77	5	33	33	CD
cord-345211-4ivqlsgt	77	6	]	]	-RRB-
cord-345211-4ivqlsgt	77	7	[	[	-LRB-
cord-345211-4ivqlsgt	77	8	34	34	CD
cord-345211-4ivqlsgt	77	9	]	]	-RRB-
cord-345211-4ivqlsgt	77	10	,	,	,
cord-345211-4ivqlsgt	77	11	although	although	IN
cord-345211-4ivqlsgt	77	12	sputum	sputum	NN
cord-345211-4ivqlsgt	77	13	and	and	CC
cord-345211-4ivqlsgt	77	14	other	other	JJ
cord-345211-4ivqlsgt	77	15	lower	low	JJR
cord-345211-4ivqlsgt	77	16	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	77	17	samples	sample	NNS
cord-345211-4ivqlsgt	77	18	are	be	VBP
cord-345211-4ivqlsgt	77	19	regarded	regard	VBN
cord-345211-4ivqlsgt	77	20	as	as	IN
cord-345211-4ivqlsgt	77	21	the	the	DT
cord-345211-4ivqlsgt	77	22	specimens	specimen	NNS
cord-345211-4ivqlsgt	77	23	of	of	IN
cord-345211-4ivqlsgt	77	24	choice	choice	NN
cord-345211-4ivqlsgt	77	25	[	[	-LRB-
cord-345211-4ivqlsgt	77	26	31	31	CD
cord-345211-4ivqlsgt	77	27	]	]	-RRB-
cord-345211-4ivqlsgt	77	28	.	.	.
cord-345211-4ivqlsgt	78	1	Recently	recently	RB
cord-345211-4ivqlsgt	78	2	,	,	,
cord-345211-4ivqlsgt	78	3	the	the	DT
cord-345211-4ivqlsgt	78	4	systematic	systematic	JJ
cord-345211-4ivqlsgt	78	5	use	use	NN
cord-345211-4ivqlsgt	78	6	of	of	IN
cord-345211-4ivqlsgt	78	7	PCR	PCR	NNP
cord-345211-4ivqlsgt	78	8	[	[	-LRB-
cord-345211-4ivqlsgt	78	9	31	31	CD
cord-345211-4ivqlsgt	78	10	]	]	-RRB-
cord-345211-4ivqlsgt	78	11	and	and	CC
cord-345211-4ivqlsgt	78	12	collection	collection	NN
cord-345211-4ivqlsgt	78	13	of	of	IN
cord-345211-4ivqlsgt	78	14	induced	induce	VBN
cord-345211-4ivqlsgt	78	15	sputum	sputum	NN
cord-345211-4ivqlsgt	78	16	from	from	IN
cord-345211-4ivqlsgt	78	17	patients	patient	NNS
cord-345211-4ivqlsgt	78	18	unable	unable	JJ
cord-345211-4ivqlsgt	78	19	to	to	TO
cord-345211-4ivqlsgt	78	20	expectorate	expectorate	VB
cord-345211-4ivqlsgt	78	21	[	[	-LRB-
cord-345211-4ivqlsgt	78	22	35	35	CD
cord-345211-4ivqlsgt	78	23	]	]	-RRB-
cord-345211-4ivqlsgt	78	24	have	have	VBP
cord-345211-4ivqlsgt	78	25	uncovered	uncover	VBN
cord-345211-4ivqlsgt	78	26	a	a	DT
cord-345211-4ivqlsgt	78	27	hidden	hide	VBN
cord-345211-4ivqlsgt	78	28	burden	burden	NN
cord-345211-4ivqlsgt	78	29	of	of	IN
cord-345211-4ivqlsgt	78	30	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	78	31	'	'	POS
cord-345211-4ivqlsgt	78	32	disease	disease	NN
cord-345211-4ivqlsgt	78	33	and	and	CC
cord-345211-4ivqlsgt	78	34	have	have	VBP
cord-345211-4ivqlsgt	78	35	demonstrated	demonstrate	VBN
cord-345211-4ivqlsgt	78	36	the	the	DT
cord-345211-4ivqlsgt	78	37	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	78	38	utility	utility	NN
cord-345211-4ivqlsgt	78	39	of	of	IN
cord-345211-4ivqlsgt	78	40	NATs	NATs	NNP
cord-345211-4ivqlsgt	78	41	for	for	IN
cord-345211-4ivqlsgt	78	42	this	this	DT
cord-345211-4ivqlsgt	78	43	disease	disease	NN
cord-345211-4ivqlsgt	78	44	.	.	.
cord-345211-4ivqlsgt	79	1	Arguably	arguably	RB
cord-345211-4ivqlsgt	79	2	,	,	,
cord-345211-4ivqlsgt	79	3	NATs	NATs	NNP
cord-345211-4ivqlsgt	79	4	are	be	VBP
cord-345211-4ivqlsgt	79	5	now	now	RB
cord-345211-4ivqlsgt	79	6	the	the	DT
cord-345211-4ivqlsgt	79	7	test	test	NN
cord-345211-4ivqlsgt	79	8	of	of	IN
cord-345211-4ivqlsgt	79	9	choice	choice	NN
cord-345211-4ivqlsgt	79	10	for	for	IN
cord-345211-4ivqlsgt	79	11	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	79	12	'	'	POS
cord-345211-4ivqlsgt	79	13	disease	disease	NN
cord-345211-4ivqlsgt	79	14	.	.	.
cord-345211-4ivqlsgt	80	1	Being	be	VBG
cord-345211-4ivqlsgt	80	2	an	an	DT
cord-345211-4ivqlsgt	80	3	environmental	environmental	JJ
cord-345211-4ivqlsgt	80	4	organism	organism	NN
cord-345211-4ivqlsgt	80	5	,	,	,
cord-345211-4ivqlsgt	80	6	there	there	EX
cord-345211-4ivqlsgt	80	7	has	have	VBZ
cord-345211-4ivqlsgt	80	8	been	be	VBN
cord-345211-4ivqlsgt	80	9	concern	concern	NN
cord-345211-4ivqlsgt	80	10	about	about	IN
cord-345211-4ivqlsgt	80	11	Legionella	legionella	NN
cord-345211-4ivqlsgt	80	12	contamination	contamination	NN
cord-345211-4ivqlsgt	80	13	during	during	IN
cord-345211-4ivqlsgt	80	14	testing	testing	NN
cord-345211-4ivqlsgt	80	15	,	,	,
cord-345211-4ivqlsgt	80	16	highlighted	highlight	VBN
cord-345211-4ivqlsgt	80	17	by	by	IN
cord-345211-4ivqlsgt	80	18	the	the	DT
cord-345211-4ivqlsgt	80	19	occasional	occasional	JJ
cord-345211-4ivqlsgt	80	20	documented	document	VBN
cord-345211-4ivqlsgt	80	21	contamination	contamination	NN
cord-345211-4ivqlsgt	80	22	of	of	IN
cord-345211-4ivqlsgt	80	23	nucleic	nucleic	JJ
cord-345211-4ivqlsgt	80	24	acid	acid	NN
cord-345211-4ivqlsgt	80	25	extraction	extraction	NN
cord-345211-4ivqlsgt	80	26	kits	kit	NNS
cord-345211-4ivqlsgt	80	27	[	[	-LRB-
cord-345211-4ivqlsgt	80	28	36	36	CD
cord-345211-4ivqlsgt	80	29	]	]	-RRB-
cord-345211-4ivqlsgt	80	30	.	.	.
cord-345211-4ivqlsgt	81	1	This	this	DT
cord-345211-4ivqlsgt	81	2	problem	problem	NN
cord-345211-4ivqlsgt	81	3	can	can	MD
cord-345211-4ivqlsgt	81	4	be	be	VB
cord-345211-4ivqlsgt	81	5	overcome	overcome	VBN
cord-345211-4ivqlsgt	81	6	by	by	IN
cord-345211-4ivqlsgt	81	7	strict	strict	JJ
cord-345211-4ivqlsgt	81	8	adherence	adherence	NN
cord-345211-4ivqlsgt	81	9	to	to	IN
cord-345211-4ivqlsgt	81	10	good	good	JJ
cord-345211-4ivqlsgt	81	11	laboratory	laboratory	NN
cord-345211-4ivqlsgt	81	12	practice	practice	NN
cord-345211-4ivqlsgt	81	13	.	.	.
cord-345211-4ivqlsgt	82	1	Mycoplasma	mycoplasma	NN
cord-345211-4ivqlsgt	82	2	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	82	3	is	be	VBZ
cord-345211-4ivqlsgt	82	4	associated	associate	VBN
cord-345211-4ivqlsgt	82	5	with	with	IN
cord-345211-4ivqlsgt	82	6	a	a	DT
cord-345211-4ivqlsgt	82	7	variety	variety	NN
cord-345211-4ivqlsgt	82	8	of	of	IN
cord-345211-4ivqlsgt	82	9	both	both	CC
cord-345211-4ivqlsgt	82	10	upper	upper	JJ
cord-345211-4ivqlsgt	82	11	and	and	CC
cord-345211-4ivqlsgt	82	12	lower	low	JJR
cord-345211-4ivqlsgt	82	13	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	82	14	tract	tract	NN
cord-345211-4ivqlsgt	82	15	infections	infection	NNS
cord-345211-4ivqlsgt	82	16	and	and	CC
cord-345211-4ivqlsgt	82	17	is	be	VBZ
cord-345211-4ivqlsgt	82	18	an	an	DT
cord-345211-4ivqlsgt	82	19	important	important	JJ
cord-345211-4ivqlsgt	82	20	cause	cause	NN
cord-345211-4ivqlsgt	82	21	of	of	IN
cord-345211-4ivqlsgt	82	22	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	82	23	,	,	,
cord-345211-4ivqlsgt	82	24	frequently	frequently	RB
cord-345211-4ivqlsgt	82	25	occurring	occur	VBG
cord-345211-4ivqlsgt	82	26	in	in	IN
cord-345211-4ivqlsgt	82	27	outbreaks	outbreak	NNS
cord-345211-4ivqlsgt	82	28	.	.	.
cord-345211-4ivqlsgt	83	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	83	2	are	be	VBP
cord-345211-4ivqlsgt	83	3	now	now	RB
cord-345211-4ivqlsgt	83	4	widely	widely	RB
cord-345211-4ivqlsgt	83	5	regarded	regard	VBN
cord-345211-4ivqlsgt	83	6	as	as	IN
cord-345211-4ivqlsgt	83	7	the	the	DT
cord-345211-4ivqlsgt	83	8	methods	method	NNS
cord-345211-4ivqlsgt	83	9	of	of	IN
cord-345211-4ivqlsgt	83	10	choice	choice	NN
cord-345211-4ivqlsgt	83	11	for	for	IN
cord-345211-4ivqlsgt	83	12	detection	detection	NN
cord-345211-4ivqlsgt	83	13	of	of	IN
cord-345211-4ivqlsgt	83	14	M.	M.	NNP
cord-345211-4ivqlsgt	83	15	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	83	16	infections	infection	NNS
cord-345211-4ivqlsgt	83	17	[	[	-LRB-
cord-345211-4ivqlsgt	83	18	37	37	CD
cord-345211-4ivqlsgt	83	19	,	,	,
cord-345211-4ivqlsgt	83	20	38	38	CD
cord-345211-4ivqlsgt	83	21	]	]	-RRB-
cord-345211-4ivqlsgt	83	22	,	,	,
cord-345211-4ivqlsgt	83	23	and	and	CC
cord-345211-4ivqlsgt	83	24	a	a	DT
cord-345211-4ivqlsgt	83	25	M.	M.	NNP
cord-345211-4ivqlsgt	83	26	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	83	27	target	target	NN
cord-345211-4ivqlsgt	83	28	has	have	VBZ
cord-345211-4ivqlsgt	83	29	been	be	VBN
cord-345211-4ivqlsgt	83	30	incorporated	incorporate	VBN
cord-345211-4ivqlsgt	83	31	alongside	alongside	IN
cord-345211-4ivqlsgt	83	32	viral	viral	JJ
cord-345211-4ivqlsgt	83	33	targets	target	NNS
cord-345211-4ivqlsgt	83	34	in	in	IN
cord-345211-4ivqlsgt	83	35	many	many	JJ
cord-345211-4ivqlsgt	83	36	large	large	JJ
cord-345211-4ivqlsgt	83	37	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	83	38	multiplex	multiplex	NN
cord-345211-4ivqlsgt	83	39	panels	panel	NNS
cord-345211-4ivqlsgt	83	40	.	.	.
cord-345211-4ivqlsgt	84	1	In	in	IN
cord-345211-4ivqlsgt	84	2	practice	practice	NN
cord-345211-4ivqlsgt	84	3	,	,	,
cord-345211-4ivqlsgt	84	4	NATs	nat	NNS
cord-345211-4ivqlsgt	84	5	have	have	VBP
cord-345211-4ivqlsgt	84	6	also	also	RB
cord-345211-4ivqlsgt	84	7	been	be	VBN
cord-345211-4ivqlsgt	84	8	useful	useful	JJ
cord-345211-4ivqlsgt	84	9	for	for	IN
cord-345211-4ivqlsgt	84	10	M.	M.	NNP
cord-345211-4ivqlsgt	84	11	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	84	12	outbreak	outbreak	NN
cord-345211-4ivqlsgt	84	13	identification	identification	NN
cord-345211-4ivqlsgt	84	14	and	and	CC
cord-345211-4ivqlsgt	84	15	management	management	NN
cord-345211-4ivqlsgt	84	16	[	[	-LRB-
cord-345211-4ivqlsgt	84	17	39	39	CD
cord-345211-4ivqlsgt	84	18	]	]	-RRB-
cord-345211-4ivqlsgt	84	19	.	.	.
cord-345211-4ivqlsgt	85	1	Both	both	DT
cord-345211-4ivqlsgt	85	2	upper	upper	JJ
cord-345211-4ivqlsgt	85	3	and	and	CC
cord-345211-4ivqlsgt	85	4	lower	low	JJR
cord-345211-4ivqlsgt	85	5	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	85	6	tract	tract	NN
cord-345211-4ivqlsgt	85	7	specimens	specimen	NNS
cord-345211-4ivqlsgt	85	8	are	be	VBP
cord-345211-4ivqlsgt	85	9	suitable	suitable	JJ
cord-345211-4ivqlsgt	85	10	for	for	IN
cord-345211-4ivqlsgt	85	11	testing	testing	NN
cord-345211-4ivqlsgt	85	12	by	by	IN
cord-345211-4ivqlsgt	85	13	NATs	NATs	NNP
cord-345211-4ivqlsgt	85	14	,	,	,
cord-345211-4ivqlsgt	85	15	and	and	CC
cord-345211-4ivqlsgt	85	16	a	a	DT
cord-345211-4ivqlsgt	85	17	positive	positive	JJ
cord-345211-4ivqlsgt	85	18	result	result	NN
cord-345211-4ivqlsgt	85	19	in	in	IN
cord-345211-4ivqlsgt	85	20	the	the	DT
cord-345211-4ivqlsgt	85	21	context	context	NN
cord-345211-4ivqlsgt	85	22	of	of	IN
cord-345211-4ivqlsgt	85	23	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	85	24	is	be	VBZ
cord-345211-4ivqlsgt	85	25	regarded	regard	VBN
cord-345211-4ivqlsgt	85	26	as	as	IN
cord-345211-4ivqlsgt	85	27	being	be	VBG
cord-345211-4ivqlsgt	85	28	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	85	29	,	,	,
cord-345211-4ivqlsgt	85	30	as	as	IN
cord-345211-4ivqlsgt	85	31	asymptomatic	asymptomatic	JJ
cord-345211-4ivqlsgt	85	32	carriage	carriage	NN
cord-345211-4ivqlsgt	85	33	of	of	IN
cord-345211-4ivqlsgt	85	34	M.	M.	NNP
cord-345211-4ivqlsgt	85	35	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	85	36	is	be	VBZ
cord-345211-4ivqlsgt	85	37	uncommon	uncommon	JJ
cord-345211-4ivqlsgt	85	38	[	[	-LRB-
cord-345211-4ivqlsgt	85	39	40	40	CD
cord-345211-4ivqlsgt	85	40	]	]	-RRB-
cord-345211-4ivqlsgt	85	41	.	.	.
cord-345211-4ivqlsgt	86	1	Chlamydophila	chlamydophila	NN
cord-345211-4ivqlsgt	86	2	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	86	3	is	be	VBZ
cord-345211-4ivqlsgt	86	4	a	a	DT
cord-345211-4ivqlsgt	86	5	relatively	relatively	RB
cord-345211-4ivqlsgt	86	6	common	common	JJ
cord-345211-4ivqlsgt	86	7	cause	cause	NN
cord-345211-4ivqlsgt	86	8	of	of	IN
cord-345211-4ivqlsgt	86	9	community	community	NN
cord-345211-4ivqlsgt	86	10	-	-	HYPH
cord-345211-4ivqlsgt	86	11	acquired	acquire	VBN
cord-345211-4ivqlsgt	86	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	86	13	in	in	IN
cord-345211-4ivqlsgt	86	14	some	some	DT
cord-345211-4ivqlsgt	86	15	geographic	geographic	JJ
cord-345211-4ivqlsgt	86	16	regions	region	NNS
cord-345211-4ivqlsgt	86	17	,	,	,
cord-345211-4ivqlsgt	86	18	but	but	CC
cord-345211-4ivqlsgt	86	19	is	be	VBZ
cord-345211-4ivqlsgt	86	20	not	not	RB
cord-345211-4ivqlsgt	86	21	typically	typically	RB
cord-345211-4ivqlsgt	86	22	associated	associate	VBN
cord-345211-4ivqlsgt	86	23	with	with	IN
cord-345211-4ivqlsgt	86	24	severe	severe	JJ
cord-345211-4ivqlsgt	86	25	disease	disease	NN
cord-345211-4ivqlsgt	86	26	[	[	-LRB-
cord-345211-4ivqlsgt	86	27	41	41	CD
cord-345211-4ivqlsgt	86	28	,	,	,
cord-345211-4ivqlsgt	86	29	42	42	CD
cord-345211-4ivqlsgt	86	30	]	]	-RRB-
cord-345211-4ivqlsgt	86	31	.	.	.
cord-345211-4ivqlsgt	87	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	87	2	have	have	VBP
cord-345211-4ivqlsgt	87	3	long	long	RB
cord-345211-4ivqlsgt	87	4	been	be	VBN
cord-345211-4ivqlsgt	87	5	used	use	VBN
cord-345211-4ivqlsgt	87	6	for	for	IN
cord-345211-4ivqlsgt	87	7	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	87	8	purposes	purpose	NNS
cord-345211-4ivqlsgt	87	9	and	and	CC
cord-345211-4ivqlsgt	87	10	,	,	,
cord-345211-4ivqlsgt	87	11	indeed	indeed	RB
cord-345211-4ivqlsgt	87	12	,	,	,
cord-345211-4ivqlsgt	87	13	C.	C.	NNP
cord-345211-4ivqlsgt	87	14	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	87	15	NATs	NATs	NNPS
cord-345211-4ivqlsgt	87	16	were	be	VBD
cord-345211-4ivqlsgt	87	17	the	the	DT
cord-345211-4ivqlsgt	87	18	focus	focus	NN
cord-345211-4ivqlsgt	87	19	of	of	IN
cord-345211-4ivqlsgt	87	20	some	some	DT
cord-345211-4ivqlsgt	87	21	of	of	IN
cord-345211-4ivqlsgt	87	22	the	the	DT
cord-345211-4ivqlsgt	87	23	earliest	early	JJS
cord-345211-4ivqlsgt	87	24	efforts	effort	NNS
cord-345211-4ivqlsgt	87	25	to	to	TO
cord-345211-4ivqlsgt	87	26	standardize	standardize	VB
cord-345211-4ivqlsgt	87	27	NATs	nat	NNS
cord-345211-4ivqlsgt	87	28	for	for	IN
cord-345211-4ivqlsgt	87	29	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	87	30	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	87	31	[	[	-LRB-
cord-345211-4ivqlsgt	87	32	43	43	CD
cord-345211-4ivqlsgt	87	33	]	]	-RRB-
cord-345211-4ivqlsgt	87	34	.	.	.
cord-345211-4ivqlsgt	88	1	Perhaps	perhaps	RB
cord-345211-4ivqlsgt	88	2	because	because	IN
cord-345211-4ivqlsgt	88	3	of	of	IN
cord-345211-4ivqlsgt	88	4	the	the	DT
cord-345211-4ivqlsgt	88	5	association	association	NN
cord-345211-4ivqlsgt	88	6	with	with	IN
cord-345211-4ivqlsgt	88	7	milder	mild	JJR
cord-345211-4ivqlsgt	88	8	disease	disease	NN
cord-345211-4ivqlsgt	88	9	,	,	,
cord-345211-4ivqlsgt	88	10	C.	C.	NNP
cord-345211-4ivqlsgt	88	11	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	88	12	targets	target	NNS
cord-345211-4ivqlsgt	88	13	have	have	VBP
cord-345211-4ivqlsgt	88	14	not	not	RB
cord-345211-4ivqlsgt	88	15	been	be	VBN
cord-345211-4ivqlsgt	88	16	a	a	DT
cord-345211-4ivqlsgt	88	17	priority	priority	NN
cord-345211-4ivqlsgt	88	18	for	for	IN
cord-345211-4ivqlsgt	88	19	incorporation	incorporation	NN
cord-345211-4ivqlsgt	88	20	into	into	IN
cord-345211-4ivqlsgt	88	21	multiplex	multiplex	JJ
cord-345211-4ivqlsgt	88	22	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	88	23	panels	panel	NNS
cord-345211-4ivqlsgt	88	24	.	.	.
cord-345211-4ivqlsgt	89	1	Colonization	colonization	NN
cord-345211-4ivqlsgt	89	2	with	with	IN
cord-345211-4ivqlsgt	89	3	Pneumocystis	Pneumocystis	NNP
cord-345211-4ivqlsgt	89	4	jirovecii	jirovecii	NNP
cord-345211-4ivqlsgt	89	5	is	be	VBZ
cord-345211-4ivqlsgt	89	6	common	common	JJ
cord-345211-4ivqlsgt	89	7	among	among	IN
cord-345211-4ivqlsgt	89	8	the	the	DT
cord-345211-4ivqlsgt	89	9	general	general	JJ
cord-345211-4ivqlsgt	89	10	population	population	NN
cord-345211-4ivqlsgt	89	11	and	and	CC
cord-345211-4ivqlsgt	89	12	is	be	VBZ
cord-345211-4ivqlsgt	89	13	associated	associate	VBN
cord-345211-4ivqlsgt	89	14	with	with	IN
cord-345211-4ivqlsgt	89	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	89	16	in	in	IN
cord-345211-4ivqlsgt	89	17	immunocompromised	immunocompromised	JJ
cord-345211-4ivqlsgt	89	18	individuals	individual	NNS
cord-345211-4ivqlsgt	89	19	.	.	.
cord-345211-4ivqlsgt	90	1	NATs	nat	NNS
cord-345211-4ivqlsgt	90	2	have	have	VBP
cord-345211-4ivqlsgt	90	3	advantages	advantage	NNS
cord-345211-4ivqlsgt	90	4	over	over	IN
cord-345211-4ivqlsgt	90	5	traditional	traditional	JJ
cord-345211-4ivqlsgt	90	6	microscopy	microscopy	NNS
cord-345211-4ivqlsgt	90	7	-	-	HYPH
cord-345211-4ivqlsgt	90	8	based	base	VBN
cord-345211-4ivqlsgt	90	9	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	90	10	tools	tool	NNS
cord-345211-4ivqlsgt	90	11	,	,	,
cord-345211-4ivqlsgt	90	12	detecting	detect	VBG
cord-345211-4ivqlsgt	90	13	P.	P.	NNP
cord-345211-4ivqlsgt	90	14	jirovecii	jirovecii	NN
cord-345211-4ivqlsgt	90	15	in	in	IN
cord-345211-4ivqlsgt	90	16	induced	induce	VBN
cord-345211-4ivqlsgt	90	17	sputum	sputum	NN
cord-345211-4ivqlsgt	90	18	,	,	,
cord-345211-4ivqlsgt	90	19	bronchoscopic	bronchoscopic	NNP
cord-345211-4ivqlsgt	90	20	,	,	,
cord-345211-4ivqlsgt	90	21	or	or	CC
cord-345211-4ivqlsgt	90	22	oropharyngeal	oropharyngeal	JJ
cord-345211-4ivqlsgt	90	23	specimens	specimen	NNS
cord-345211-4ivqlsgt	90	24	with	with	IN
cord-345211-4ivqlsgt	90	25	high	high	JJ
cord-345211-4ivqlsgt	90	26	sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	90	27	[	[	-LRB-
cord-345211-4ivqlsgt	90	28	44	44	CD
cord-345211-4ivqlsgt	90	29	]	]	-RRB-
cord-345211-4ivqlsgt	90	30	.	.	.
cord-345211-4ivqlsgt	91	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	91	2	,	,	,
cord-345211-4ivqlsgt	91	3	it	-PRON-	PRP
cord-345211-4ivqlsgt	91	4	was	be	VBD
cord-345211-4ivqlsgt	91	5	PCRbased	pcrbase	VBN
cord-345211-4ivqlsgt	91	6	methods	method	NNS
cord-345211-4ivqlsgt	91	7	that	that	WDT
cord-345211-4ivqlsgt	91	8	provided	provide	VBD
cord-345211-4ivqlsgt	91	9	some	some	DT
cord-345211-4ivqlsgt	91	10	of	of	IN
cord-345211-4ivqlsgt	91	11	the	the	DT
cord-345211-4ivqlsgt	91	12	early	early	JJ
cord-345211-4ivqlsgt	91	13	evidence	evidence	NN
cord-345211-4ivqlsgt	91	14	of	of	IN
cord-345211-4ivqlsgt	91	15	the	the	DT
cord-345211-4ivqlsgt	91	16	existence	existence	NN
cord-345211-4ivqlsgt	91	17	of	of	IN
cord-345211-4ivqlsgt	91	18	P.	P.	NNP
cord-345211-4ivqlsgt	91	19	jirovecii	jirovecii	NNP
cord-345211-4ivqlsgt	91	20	colonization	colonization	NNP
cord-345211-4ivqlsgt	91	21	[	[	-LRB-
cord-345211-4ivqlsgt	91	22	45	45	CD
cord-345211-4ivqlsgt	91	23	]	]	-RRB-
cord-345211-4ivqlsgt	91	24	.	.	.
cord-345211-4ivqlsgt	92	1	The	the	DT
cord-345211-4ivqlsgt	92	2	use	use	NN
cord-345211-4ivqlsgt	92	3	of	of	IN
cord-345211-4ivqlsgt	92	4	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	92	5	methods	method	NNS
cord-345211-4ivqlsgt	92	6	has	have	VBZ
cord-345211-4ivqlsgt	92	7	been	be	VBN
cord-345211-4ivqlsgt	92	8	necessary	necessary	JJ
cord-345211-4ivqlsgt	92	9	in	in	IN
cord-345211-4ivqlsgt	92	10	order	order	NN
cord-345211-4ivqlsgt	92	11	to	to	TO
cord-345211-4ivqlsgt	92	12	discriminate	discriminate	VB
cord-345211-4ivqlsgt	92	13	between	between	IN
cord-345211-4ivqlsgt	92	14	colonization	colonization	NN
cord-345211-4ivqlsgt	92	15	and	and	CC
cord-345211-4ivqlsgt	92	16	disease	disease	NN
cord-345211-4ivqlsgt	92	17	;	;	:
cord-345211-4ivqlsgt	92	18	thus	thus	RB
cord-345211-4ivqlsgt	92	19	,	,	,
cord-345211-4ivqlsgt	92	20	at	at	IN
cord-345211-4ivqlsgt	92	21	least	least	JJS
cord-345211-4ivqlsgt	92	22	partially	partially	RB
cord-345211-4ivqlsgt	92	23	overcoming	overcome	VBG
cord-345211-4ivqlsgt	92	24	the	the	DT
cord-345211-4ivqlsgt	92	25	problem	problem	NN
cord-345211-4ivqlsgt	92	26	of	of	IN
cord-345211-4ivqlsgt	92	27	false	false	JJ
cord-345211-4ivqlsgt	92	28	-	-	HYPH
cord-345211-4ivqlsgt	92	29	positive	positive	JJ
cord-345211-4ivqlsgt	92	30	results	result	NNS
cord-345211-4ivqlsgt	92	31	.	.	.
cord-345211-4ivqlsgt	93	1	Although	although	IN
cord-345211-4ivqlsgt	93	2	promising	promise	VBG
cord-345211-4ivqlsgt	93	3	,	,	,
cord-345211-4ivqlsgt	93	4	the	the	DT
cord-345211-4ivqlsgt	93	5	cut	cut	VB
cord-345211-4ivqlsgt	93	6	-	-	HYPH
cord-345211-4ivqlsgt	93	7	off	off	RP
cord-345211-4ivqlsgt	93	8	values	value	NNS
cord-345211-4ivqlsgt	93	9	remain	remain	VBP
cord-345211-4ivqlsgt	93	10	to	to	TO
cord-345211-4ivqlsgt	93	11	be	be	VB
cord-345211-4ivqlsgt	93	12	standardized	standardize	VBN
cord-345211-4ivqlsgt	93	13	for	for	IN
cord-345211-4ivqlsgt	93	14	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	93	15	NATs	NATs	NNP
cord-345211-4ivqlsgt	93	16	and	and	CC
cord-345211-4ivqlsgt	93	17	may	may	MD
cord-345211-4ivqlsgt	93	18	vary	vary	VB
cord-345211-4ivqlsgt	93	19	with	with	IN
cord-345211-4ivqlsgt	93	20	patient	patient	JJ
cord-345211-4ivqlsgt	93	21	population	population	NN
cord-345211-4ivqlsgt	93	22	[	[	-LRB-
cord-345211-4ivqlsgt	93	23	46	46	CD
cord-345211-4ivqlsgt	93	24	]	]	-RRB-
cord-345211-4ivqlsgt	93	25	.	.	.
cord-345211-4ivqlsgt	94	1	Microscopy	Microscopy	NNS
cord-345211-4ivqlsgt	94	2	and	and	CC
cord-345211-4ivqlsgt	94	3	culture	culture	NN
cord-345211-4ivqlsgt	94	4	of	of	IN
cord-345211-4ivqlsgt	94	5	lower	low	JJR
cord-345211-4ivqlsgt	94	6	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	94	7	samples	sample	NNS
cord-345211-4ivqlsgt	94	8	remain	remain	VBP
cord-345211-4ivqlsgt	94	9	the	the	DT
cord-345211-4ivqlsgt	94	10	standard	standard	JJ
cord-345211-4ivqlsgt	94	11	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	94	12	tools	tool	NNS
cord-345211-4ivqlsgt	94	13	for	for	IN
cord-345211-4ivqlsgt	94	14	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	94	15	.	.	.
cord-345211-4ivqlsgt	95	1	Despite	despite	IN
cord-345211-4ivqlsgt	95	2	improvements	improvement	NNS
cord-345211-4ivqlsgt	95	3	in	in	IN
cord-345211-4ivqlsgt	95	4	culture	culture	NN
cord-345211-4ivqlsgt	95	5	-	-	HYPH
cord-345211-4ivqlsgt	95	6	based	base	VBN
cord-345211-4ivqlsgt	95	7	methods	method	NNS
cord-345211-4ivqlsgt	95	8	,	,	,
cord-345211-4ivqlsgt	95	9	the	the	DT
cord-345211-4ivqlsgt	95	10	slow	slow	JJ
cord-345211-4ivqlsgt	95	11	turnaround	turnaround	NN
cord-345211-4ivqlsgt	95	12	time	time	NN
cord-345211-4ivqlsgt	95	13	for	for	IN
cord-345211-4ivqlsgt	95	14	laboratory	laboratory	NN
cord-345211-4ivqlsgt	95	15	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	95	16	and	and	CC
cord-345211-4ivqlsgt	95	17	global	global	JJ
cord-345211-4ivqlsgt	95	18	concern	concern	NN
cord-345211-4ivqlsgt	95	19	about	about	IN
cord-345211-4ivqlsgt	95	20	disease	disease	NN
cord-345211-4ivqlsgt	95	21	burden	burden	NN
cord-345211-4ivqlsgt	95	22	and	and	CC
cord-345211-4ivqlsgt	95	23	multidrug	multidrug	NN
cord-345211-4ivqlsgt	95	24	resistance	resistance	NN
cord-345211-4ivqlsgt	95	25	has	have	VBZ
cord-345211-4ivqlsgt	95	26	provided	provide	VBN
cord-345211-4ivqlsgt	95	27	the	the	DT
cord-345211-4ivqlsgt	95	28	impetus	impetus	NN
cord-345211-4ivqlsgt	95	29	for	for	IN
cord-345211-4ivqlsgt	95	30	the	the	DT
cord-345211-4ivqlsgt	95	31	development	development	NN
cord-345211-4ivqlsgt	95	32	of	of	IN
cord-345211-4ivqlsgt	95	33	rapid	rapid	JJ
cord-345211-4ivqlsgt	95	34	testing	testing	NN
cord-345211-4ivqlsgt	95	35	methods	method	NNS
cord-345211-4ivqlsgt	95	36	[	[	-LRB-
cord-345211-4ivqlsgt	95	37	47	47	CD
cord-345211-4ivqlsgt	95	38	]	]	-RRB-
cord-345211-4ivqlsgt	95	39	.	.	.
cord-345211-4ivqlsgt	96	1	Considerable	considerable	JJ
cord-345211-4ivqlsgt	96	2	effort	effort	NN
cord-345211-4ivqlsgt	96	3	has	have	VBZ
cord-345211-4ivqlsgt	96	4	been	be	VBN
cord-345211-4ivqlsgt	96	5	put	put	VBN
cord-345211-4ivqlsgt	96	6	into	into	IN
cord-345211-4ivqlsgt	96	7	the	the	DT
cord-345211-4ivqlsgt	96	8	development	development	NN
cord-345211-4ivqlsgt	96	9	of	of	IN
cord-345211-4ivqlsgt	96	10	NATs	NATs	NNP
cord-345211-4ivqlsgt	96	11	for	for	IN
cord-345211-4ivqlsgt	96	12	Mycobacterium	Mycobacterium	NNP
cord-345211-4ivqlsgt	96	13	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	96	14	,	,	,
cord-345211-4ivqlsgt	96	15	and	and	CC
cord-345211-4ivqlsgt	96	16	several	several	JJ
cord-345211-4ivqlsgt	96	17	commercial	commercial	JJ
cord-345211-4ivqlsgt	96	18	assays	assay	NNS
cord-345211-4ivqlsgt	96	19	are	be	VBP
cord-345211-4ivqlsgt	96	20	now	now	RB
cord-345211-4ivqlsgt	96	21	widely	widely	RB
cord-345211-4ivqlsgt	96	22	available	available	JJ
cord-345211-4ivqlsgt	96	23	[	[	-LRB-
cord-345211-4ivqlsgt	96	24	48	48	CD
cord-345211-4ivqlsgt	96	25	]	]	-RRB-
cord-345211-4ivqlsgt	96	26	.	.	.
cord-345211-4ivqlsgt	97	1	Interestingly	interestingly	RB
cord-345211-4ivqlsgt	97	2	,	,	,
cord-345211-4ivqlsgt	97	3	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	97	4	is	be	VBZ
cord-345211-4ivqlsgt	97	5	unusual	unusual	JJ
cord-345211-4ivqlsgt	97	6	among	among	IN
cord-345211-4ivqlsgt	97	7	infectious	infectious	JJ
cord-345211-4ivqlsgt	97	8	diseases	disease	NNS
cord-345211-4ivqlsgt	97	9	in	in	IN
cord-345211-4ivqlsgt	97	10	that	that	IN
cord-345211-4ivqlsgt	97	11	NATs	NATs	NNP
cord-345211-4ivqlsgt	97	12	are	be	VBP
cord-345211-4ivqlsgt	97	13	less	less	RBR
cord-345211-4ivqlsgt	97	14	sensitive	sensitive	JJ
cord-345211-4ivqlsgt	97	15	than	than	IN
cord-345211-4ivqlsgt	97	16	culture	culture	NN
cord-345211-4ivqlsgt	97	17	,	,	,
cord-345211-4ivqlsgt	97	18	a	a	DT
cord-345211-4ivqlsgt	97	19	possible	possible	JJ
cord-345211-4ivqlsgt	97	20	consequence	consequence	NN
cord-345211-4ivqlsgt	97	21	of	of	IN
cord-345211-4ivqlsgt	97	22	difficulty	difficulty	NN
cord-345211-4ivqlsgt	97	23	with	with	IN
cord-345211-4ivqlsgt	97	24	DNA	dna	NN
cord-345211-4ivqlsgt	97	25	extraction	extraction	NN
cord-345211-4ivqlsgt	97	26	.	.	.
cord-345211-4ivqlsgt	98	1	Sensitivities	sensitivity	NNS
cord-345211-4ivqlsgt	98	2	are	be	VBP
cord-345211-4ivqlsgt	98	3	typically	typically	RB
cord-345211-4ivqlsgt	98	4	92	92	CD
cord-345211-4ivqlsgt	98	5	-	-	SYM
cord-345211-4ivqlsgt	98	6	100	100	CD
cord-345211-4ivqlsgt	98	7	%	%	NN
cord-345211-4ivqlsgt	98	8	for	for	IN
cord-345211-4ivqlsgt	98	9	smear	smear	NN
cord-345211-4ivqlsgt	98	10	-	-	HYPH
cord-345211-4ivqlsgt	98	11	positive	positive	JJ
cord-345211-4ivqlsgt	98	12	specimens	specimen	NNS
cord-345211-4ivqlsgt	98	13	and	and	CC
cord-345211-4ivqlsgt	98	14	40	40	CD
cord-345211-4ivqlsgt	98	15	-	-	SYM
cord-345211-4ivqlsgt	98	16	93	93	CD
cord-345211-4ivqlsgt	98	17	%	%	NN
cord-345211-4ivqlsgt	98	18	for	for	IN
cord-345211-4ivqlsgt	98	19	smear	smear	NN
cord-345211-4ivqlsgt	98	20	-	-	HYPH
cord-345211-4ivqlsgt	98	21	negative	negative	JJ
cord-345211-4ivqlsgt	98	22	specimens	specimen	NNS
cord-345211-4ivqlsgt	98	23	[	[	-LRB-
cord-345211-4ivqlsgt	98	24	48	48	CD
cord-345211-4ivqlsgt	98	25	]	]	-RRB-
cord-345211-4ivqlsgt	98	26	.	.	.
cord-345211-4ivqlsgt	99	1	Importantly	importantly	RB
cord-345211-4ivqlsgt	99	2	,	,	,
cord-345211-4ivqlsgt	99	3	small	small	JJ
cord-345211-4ivqlsgt	99	4	,	,	,
cord-345211-4ivqlsgt	99	5	user	user	NN
cord-345211-4ivqlsgt	99	6	-	-	HYPH
cord-345211-4ivqlsgt	99	7	friendly	friendly	JJ
cord-345211-4ivqlsgt	99	8	platforms	platform	NNS
cord-345211-4ivqlsgt	99	9	(	(	-LRB-
cord-345211-4ivqlsgt	99	10	such	such	JJ
cord-345211-4ivqlsgt	99	11	as	as	IN
cord-345211-4ivqlsgt	99	12	the	the	DT
cord-345211-4ivqlsgt	99	13	Xpert	Xpert	NNP
cord-345211-4ivqlsgt	99	14	MTB	MTB	NNP
cord-345211-4ivqlsgt	99	15	/	/	SYM
cord-345211-4ivqlsgt	99	16	RIF	RIF	NNP
cord-345211-4ivqlsgt	99	17	assay	assay	NN
cord-345211-4ivqlsgt	99	18	)	)	-RRB-
cord-345211-4ivqlsgt	99	19	have	have	VBP
cord-345211-4ivqlsgt	99	20	been	be	VBN
cord-345211-4ivqlsgt	99	21	developed	develop	VBN
cord-345211-4ivqlsgt	99	22	to	to	IN
cord-345211-4ivqlsgt	99	23	an	an	DT
cord-345211-4ivqlsgt	99	24	extent	extent	NN
cord-345211-4ivqlsgt	99	25	that	that	IN
cord-345211-4ivqlsgt	99	26	they	-PRON-	PRP
cord-345211-4ivqlsgt	99	27	have	have	VBP
cord-345211-4ivqlsgt	99	28	been	be	VBN
cord-345211-4ivqlsgt	99	29	successfully	successfully	RB
cord-345211-4ivqlsgt	99	30	deployed	deploy	VBN
cord-345211-4ivqlsgt	99	31	in	in	IN
cord-345211-4ivqlsgt	99	32	many	many	JJ
cord-345211-4ivqlsgt	99	33	resource	resource	NN
cord-345211-4ivqlsgt	99	34	-	-	HYPH
cord-345211-4ivqlsgt	99	35	poor	poor	JJ
cord-345211-4ivqlsgt	99	36	locations	location	NNS
cord-345211-4ivqlsgt	99	37	where	where	WRB
cord-345211-4ivqlsgt	99	38	rapid	rapid	JJ
cord-345211-4ivqlsgt	99	39	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	99	40	for	for	IN
cord-345211-4ivqlsgt	99	41	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	99	42	are	be	VBP
cord-345211-4ivqlsgt	99	43	most	most	RBS
cord-345211-4ivqlsgt	99	44	needed	need	VBN
cord-345211-4ivqlsgt	99	45	[	[	-LRB-
cord-345211-4ivqlsgt	99	46	47	47	CD
cord-345211-4ivqlsgt	99	47	,	,	,
cord-345211-4ivqlsgt	99	48	49	49	CD
cord-345211-4ivqlsgt	99	49	]	]	-RRB-
cord-345211-4ivqlsgt	99	50	.	.	.
cord-345211-4ivqlsgt	100	1	This	this	DT
cord-345211-4ivqlsgt	100	2	is	be	VBZ
cord-345211-4ivqlsgt	100	3	a	a	DT
cord-345211-4ivqlsgt	100	4	real	real	JJ
cord-345211-4ivqlsgt	100	5	success	success	NN
cord-345211-4ivqlsgt	100	6	story	story	NN
cord-345211-4ivqlsgt	100	7	and	and	CC
cord-345211-4ivqlsgt	100	8	highlights	highlight	NNS
cord-345211-4ivqlsgt	100	9	what	what	WP
cord-345211-4ivqlsgt	100	10	can	can	MD
cord-345211-4ivqlsgt	100	11	be	be	VB
cord-345211-4ivqlsgt	100	12	achieved	achieve	VBN
cord-345211-4ivqlsgt	100	13	with	with	IN
cord-345211-4ivqlsgt	100	14	molecular	molecular	JJ
cord-345211-4ivqlsgt	100	15	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	100	16	outside	outside	IN
cord-345211-4ivqlsgt	100	17	major	major	JJ
cord-345211-4ivqlsgt	100	18	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	100	19	.	.	.
cord-345211-4ivqlsgt	101	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	101	2	are	be	VBP
cord-345211-4ivqlsgt	101	3	now	now	RB
cord-345211-4ivqlsgt	101	4	established	establish	VBN
cord-345211-4ivqlsgt	101	5	tests	test	NNS
cord-345211-4ivqlsgt	101	6	for	for	IN
cord-345211-4ivqlsgt	101	7	the	the	DT
cord-345211-4ivqlsgt	101	8	detection	detection	NN
cord-345211-4ivqlsgt	101	9	of	of	IN
cord-345211-4ivqlsgt	101	10	the	the	DT
cord-345211-4ivqlsgt	101	11	causative	causative	JJ
cord-345211-4ivqlsgt	101	12	agents	agent	NNS
cord-345211-4ivqlsgt	101	13	of	of	IN
cord-345211-4ivqlsgt	101	14	pertussis	pertussis	NN
cord-345211-4ivqlsgt	101	15	[	[	-LRB-
cord-345211-4ivqlsgt	101	16	50	50	CD
cord-345211-4ivqlsgt	101	17	]	]	-RRB-
cord-345211-4ivqlsgt	101	18	[	[	-LRB-
cord-345211-4ivqlsgt	101	19	51	51	CD
cord-345211-4ivqlsgt	101	20	]	]	-RRB-
cord-345211-4ivqlsgt	101	21	[	[	-LRB-
cord-345211-4ivqlsgt	101	22	52	52	CD
cord-345211-4ivqlsgt	101	23	]	]	-RRB-
cord-345211-4ivqlsgt	101	24	.	.	.
cord-345211-4ivqlsgt	102	1	While	while	IN
cord-345211-4ivqlsgt	102	2	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	102	3	pertussis	pertussis	NN
cord-345211-4ivqlsgt	102	4	is	be	VBZ
cord-345211-4ivqlsgt	102	5	the	the	DT
cord-345211-4ivqlsgt	102	6	major	major	JJ
cord-345211-4ivqlsgt	102	7	cause	cause	NN
cord-345211-4ivqlsgt	102	8	of	of	IN
cord-345211-4ivqlsgt	102	9	pertussis	pertussis	NN
cord-345211-4ivqlsgt	102	10	in	in	IN
cord-345211-4ivqlsgt	102	11	humans	human	NNS
cord-345211-4ivqlsgt	102	12	and	and	CC
cord-345211-4ivqlsgt	102	13	can	can	MD
cord-345211-4ivqlsgt	102	14	be	be	VB
cord-345211-4ivqlsgt	102	15	complicated	complicate	VBN
cord-345211-4ivqlsgt	102	16	by	by	IN
cord-345211-4ivqlsgt	102	17	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	102	18	[	[	-LRB-
cord-345211-4ivqlsgt	102	19	53	53	CD
cord-345211-4ivqlsgt	102	20	,	,	,
cord-345211-4ivqlsgt	102	21	54	54	CD
cord-345211-4ivqlsgt	102	22	]	]	-RRB-
cord-345211-4ivqlsgt	102	23	,	,	,
cord-345211-4ivqlsgt	102	24	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	102	25	bronchiseptica	bronchiseptica	NNP
cord-345211-4ivqlsgt	102	26	,	,	,
cord-345211-4ivqlsgt	102	27	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	102	28	holmesii	holmesii	NNP
cord-345211-4ivqlsgt	102	29	,	,	,
cord-345211-4ivqlsgt	102	30	and	and	CC
cord-345211-4ivqlsgt	102	31	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	102	32	parapertussis	parapertussi	NNS
cord-345211-4ivqlsgt	102	33	have	have	VBP
cord-345211-4ivqlsgt	102	34	all	all	DT
cord-345211-4ivqlsgt	102	35	been	be	VBN
cord-345211-4ivqlsgt	102	36	occasionally	occasionally	RB
cord-345211-4ivqlsgt	102	37	associated	associate	VBN
cord-345211-4ivqlsgt	102	38	with	with	IN
cord-345211-4ivqlsgt	102	39	(	(	-LRB-
cord-345211-4ivqlsgt	102	40	often	often	RB
cord-345211-4ivqlsgt	102	41	milder	mild	JJR
cord-345211-4ivqlsgt	102	42	)	)	-RRB-
cord-345211-4ivqlsgt	102	43	pertussis	pertussis	NN
cord-345211-4ivqlsgt	102	44	-	-	HYPH
cord-345211-4ivqlsgt	102	45	like	like	JJ
cord-345211-4ivqlsgt	102	46	illnesses	illness	NNS
cord-345211-4ivqlsgt	102	47	[	[	-LRB-
cord-345211-4ivqlsgt	102	48	50	50	CD
cord-345211-4ivqlsgt	102	49	]	]	-RRB-
cord-345211-4ivqlsgt	102	50	.	.	.
cord-345211-4ivqlsgt	103	1	NATs	NATs	NNP
cord-345211-4ivqlsgt	103	2	are	be	VBP
cord-345211-4ivqlsgt	103	3	the	the	DT
cord-345211-4ivqlsgt	103	4	most	most	RBS
cord-345211-4ivqlsgt	103	5	sensitive	sensitive	JJ
cord-345211-4ivqlsgt	103	6	methods	method	NNS
cord-345211-4ivqlsgt	103	7	for	for	IN
cord-345211-4ivqlsgt	103	8	the	the	DT
cord-345211-4ivqlsgt	103	9	detection	detection	NN
cord-345211-4ivqlsgt	103	10	of	of	IN
cord-345211-4ivqlsgt	103	11	B.	B.	NNP
cord-345211-4ivqlsgt	103	12	pertussis	pertussis	NN
cord-345211-4ivqlsgt	103	13	and	and	CC
cord-345211-4ivqlsgt	103	14	,	,	,
cord-345211-4ivqlsgt	103	15	with	with	IN
cord-345211-4ivqlsgt	103	16	rapid	rapid	JJ
cord-345211-4ivqlsgt	103	17	turnaround	turnaround	NN
cord-345211-4ivqlsgt	103	18	times	time	NNS
cord-345211-4ivqlsgt	103	19	,	,	,
cord-345211-4ivqlsgt	103	20	have	have	VBP
cord-345211-4ivqlsgt	103	21	been	be	VBN
cord-345211-4ivqlsgt	103	22	invaluable	invaluable	JJ
cord-345211-4ivqlsgt	103	23	tools	tool	NNS
cord-345211-4ivqlsgt	103	24	in	in	IN
cord-345211-4ivqlsgt	103	25	outbreak	outbreak	NN
cord-345211-4ivqlsgt	103	26	management	management	NN
cord-345211-4ivqlsgt	103	27	[	[	-LRB-
cord-345211-4ivqlsgt	103	28	55	55	CD
cord-345211-4ivqlsgt	103	29	,	,	,
cord-345211-4ivqlsgt	103	30	56	56	CD
cord-345211-4ivqlsgt	103	31	]	]	-RRB-
cord-345211-4ivqlsgt	103	32	.	.	.
cord-345211-4ivqlsgt	104	1	The	the	DT
cord-345211-4ivqlsgt	104	2	main	main	JJ
cord-345211-4ivqlsgt	104	3	limitation	limitation	NN
cord-345211-4ivqlsgt	104	4	of	of	IN
cord-345211-4ivqlsgt	104	5	B.	B.	NNP
cord-345211-4ivqlsgt	104	6	pertussis	pertussis	NN
cord-345211-4ivqlsgt	104	7	NATs	NATs	NNP
cord-345211-4ivqlsgt	104	8	is	be	VBZ
cord-345211-4ivqlsgt	104	9	specificity	specificity	NN
cord-345211-4ivqlsgt	104	10	,	,	,
cord-345211-4ivqlsgt	104	11	particularly	particularly	RB
cord-345211-4ivqlsgt	104	12	the	the	DT
cord-345211-4ivqlsgt	104	13	ability	ability	NN
cord-345211-4ivqlsgt	104	14	of	of	IN
cord-345211-4ivqlsgt	104	15	the	the	DT
cord-345211-4ivqlsgt	104	16	most	most	RBS
cord-345211-4ivqlsgt	104	17	widely	widely	RB
cord-345211-4ivqlsgt	104	18	used	use	VBN
cord-345211-4ivqlsgt	104	19	(	(	-LRB-
cord-345211-4ivqlsgt	104	20	IS481-based	is481-base	VBN
cord-345211-4ivqlsgt	104	21	)	)	-RRB-
cord-345211-4ivqlsgt	104	22	assays	assay	NNS
cord-345211-4ivqlsgt	104	23	to	to	TO
cord-345211-4ivqlsgt	104	24	also	also	RB
cord-345211-4ivqlsgt	104	25	detect	detect	VB
cord-345211-4ivqlsgt	104	26	B.	B.	NNP
cord-345211-4ivqlsgt	104	27	holmesii	holmesii	NNP
cord-345211-4ivqlsgt	104	28	,	,	,
cord-345211-4ivqlsgt	104	29	which	which	WDT
cord-345211-4ivqlsgt	104	30	is	be	VBZ
cord-345211-4ivqlsgt	104	31	generally	generally	RB
cord-345211-4ivqlsgt	104	32	considered	consider	VBN
cord-345211-4ivqlsgt	104	33	a	a	DT
cord-345211-4ivqlsgt	104	34	false	false	JJ
cord-345211-4ivqlsgt	104	35	positive	positive	JJ
cord-345211-4ivqlsgt	104	36	result	result	NN
cord-345211-4ivqlsgt	104	37	[	[	-LRB-
cord-345211-4ivqlsgt	104	38	50	50	CD
cord-345211-4ivqlsgt	104	39	]	]	-RRB-
cord-345211-4ivqlsgt	104	40	.	.	.
cord-345211-4ivqlsgt	105	1	The	the	DT
cord-345211-4ivqlsgt	105	2	use	use	NN
cord-345211-4ivqlsgt	105	3	of	of	IN
cord-345211-4ivqlsgt	105	4	dual	dual	JJ
cord-345211-4ivqlsgt	105	5	target	target	NN
cord-345211-4ivqlsgt	105	6	assays	assay	NNS
cord-345211-4ivqlsgt	105	7	has	have	VBZ
cord-345211-4ivqlsgt	105	8	been	be	VBN
cord-345211-4ivqlsgt	105	9	advocated	advocate	VBN
cord-345211-4ivqlsgt	105	10	to	to	TO
cord-345211-4ivqlsgt	105	11	overcome	overcome	VB
cord-345211-4ivqlsgt	105	12	this	this	DT
cord-345211-4ivqlsgt	105	13	potential	potential	JJ
cord-345211-4ivqlsgt	105	14	problem	problem	NN
cord-345211-4ivqlsgt	105	15	[	[	-LRB-
cord-345211-4ivqlsgt	105	16	52	52	CD
cord-345211-4ivqlsgt	105	17	]	]	-RRB-
cord-345211-4ivqlsgt	105	18	.	.	.
cord-345211-4ivqlsgt	106	1	What	what	WP
cord-345211-4ivqlsgt	106	2	are	be	VBP
cord-345211-4ivqlsgt	106	3	the	the	DT
cord-345211-4ivqlsgt	106	4	limitations	limitation	NNS
cord-345211-4ivqlsgt	106	5	of	of	IN
cord-345211-4ivqlsgt	106	6	molecular	molecular	JJ
cord-345211-4ivqlsgt	106	7	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	106	8	tests	test	NNS
cord-345211-4ivqlsgt	106	9	for	for	IN
cord-345211-4ivqlsgt	106	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	106	11	and	and	CC
cord-345211-4ivqlsgt	106	12	what	what	WP
cord-345211-4ivqlsgt	106	13	needs	need	VBZ
cord-345211-4ivqlsgt	106	14	to	to	TO
cord-345211-4ivqlsgt	106	15	be	be	VB
cord-345211-4ivqlsgt	106	16	addressed	address	VBN
cord-345211-4ivqlsgt	106	17	in	in	IN
cord-345211-4ivqlsgt	106	18	order	order	NN
cord-345211-4ivqlsgt	106	19	to	to	TO
cord-345211-4ivqlsgt	106	20	progress	progress	VB
cord-345211-4ivqlsgt	106	21	with	with	IN
cord-345211-4ivqlsgt	106	22	development	development	NN
cord-345211-4ivqlsgt	106	23	?	?	.
cord-345211-4ivqlsgt	107	1	Common	common	JJ
cord-345211-4ivqlsgt	107	2	to	to	IN
cord-345211-4ivqlsgt	107	3	all	all	DT
cord-345211-4ivqlsgt	107	4	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	107	5	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	107	6	testing	testing	NN
cord-345211-4ivqlsgt	107	7	,	,	,
cord-345211-4ivqlsgt	107	8	the	the	DT
cord-345211-4ivqlsgt	107	9	inability	inability	NN
cord-345211-4ivqlsgt	107	10	to	to	TO
cord-345211-4ivqlsgt	107	11	obtain	obtain	VB
cord-345211-4ivqlsgt	107	12	good	good	JJ
cord-345211-4ivqlsgt	107	13	quality	quality	NN
cord-345211-4ivqlsgt	107	14	specimens	specimen	NNS
cord-345211-4ivqlsgt	107	15	from	from	IN
cord-345211-4ivqlsgt	107	16	the	the	DT
cord-345211-4ivqlsgt	107	17	lower	low	JJR
cord-345211-4ivqlsgt	107	18	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	107	19	tract	tract	NN
cord-345211-4ivqlsgt	107	20	is	be	VBZ
cord-345211-4ivqlsgt	107	21	a	a	DT
cord-345211-4ivqlsgt	107	22	major	major	JJ
cord-345211-4ivqlsgt	107	23	problem	problem	NN
cord-345211-4ivqlsgt	107	24	that	that	WDT
cord-345211-4ivqlsgt	107	25	will	will	MD
cord-345211-4ivqlsgt	107	26	only	only	RB
cord-345211-4ivqlsgt	107	27	be	be	VB
cord-345211-4ivqlsgt	107	28	overcome	overcome	VBN
cord-345211-4ivqlsgt	107	29	through	through	IN
cord-345211-4ivqlsgt	107	30	new	new	JJ
cord-345211-4ivqlsgt	107	31	innovative	innovative	JJ
cord-345211-4ivqlsgt	107	32	and	and	CC
cord-345211-4ivqlsgt	107	33	safe	safe	JJ
cord-345211-4ivqlsgt	107	34	methods	method	NNS
cord-345211-4ivqlsgt	107	35	of	of	IN
cord-345211-4ivqlsgt	107	36	specimen	specimen	JJ
cord-345211-4ivqlsgt	107	37	collection	collection	NN
cord-345211-4ivqlsgt	107	38	and	and	CC
cord-345211-4ivqlsgt	107	39	a	a	DT
cord-345211-4ivqlsgt	107	40	greater	great	JJR
cord-345211-4ivqlsgt	107	41	understanding	understanding	NN
cord-345211-4ivqlsgt	107	42	of	of	IN
cord-345211-4ivqlsgt	107	43	the	the	DT
cord-345211-4ivqlsgt	107	44	relationships	relationship	NNS
cord-345211-4ivqlsgt	107	45	between	between	IN
cord-345211-4ivqlsgt	107	46	changes	change	NNS
cord-345211-4ivqlsgt	107	47	in	in	IN
cord-345211-4ivqlsgt	107	48	the	the	DT
cord-345211-4ivqlsgt	107	49	lung	lung	NN
cord-345211-4ivqlsgt	107	50	and	and	CC
cord-345211-4ivqlsgt	107	51	in	in	IN
cord-345211-4ivqlsgt	107	52	more	more	RBR
cord-345211-4ivqlsgt	107	53	distant	distant	JJ
cord-345211-4ivqlsgt	107	54	specimens	specimen	NNS
cord-345211-4ivqlsgt	107	55	in	in	IN
cord-345211-4ivqlsgt	107	56	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	107	57	.	.	.
cord-345211-4ivqlsgt	108	1	A	a	DT
cord-345211-4ivqlsgt	108	2	second	second	JJ
cord-345211-4ivqlsgt	108	3	-	-	HYPH
cord-345211-4ivqlsgt	108	4	major	major	JJ
cord-345211-4ivqlsgt	108	5	limitation	limitation	NN
cord-345211-4ivqlsgt	108	6	of	of	IN
cord-345211-4ivqlsgt	108	7	NATs	NATs	NNP
cord-345211-4ivqlsgt	108	8	is	be	VBZ
cord-345211-4ivqlsgt	108	9	their	-PRON-	PRP$
cord-345211-4ivqlsgt	108	10	inability	inability	NN
cord-345211-4ivqlsgt	108	11	to	to	TO
cord-345211-4ivqlsgt	108	12	distinguish	distinguish	VB
cord-345211-4ivqlsgt	108	13	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	108	14	from	from	IN
cord-345211-4ivqlsgt	108	15	innocent	innocent	JJ
cord-345211-4ivqlsgt	108	16	bystanders	bystander	NNS
cord-345211-4ivqlsgt	108	17	.	.	.
cord-345211-4ivqlsgt	109	1	In	in	IN
cord-345211-4ivqlsgt	109	2	essence	essence	NN
cord-345211-4ivqlsgt	109	3	,	,	,
cord-345211-4ivqlsgt	109	4	we	-PRON-	PRP
cord-345211-4ivqlsgt	109	5	need	need	VBP
cord-345211-4ivqlsgt	109	6	two	two	CD
cord-345211-4ivqlsgt	109	7	pieces	piece	NNS
cord-345211-4ivqlsgt	109	8	of	of	IN
cord-345211-4ivqlsgt	109	9	information	information	NN
cord-345211-4ivqlsgt	109	10	.	.	.
cord-345211-4ivqlsgt	110	1	First	first	RB
cord-345211-4ivqlsgt	110	2	,	,	,
cord-345211-4ivqlsgt	110	3	is	be	VBZ
cord-345211-4ivqlsgt	110	4	a	a	DT
cord-345211-4ivqlsgt	110	5	particular	particular	JJ
cord-345211-4ivqlsgt	110	6	microorganism	microorganism	NN
cord-345211-4ivqlsgt	110	7	present	present	JJ
cord-345211-4ivqlsgt	110	8	in	in	IN
cord-345211-4ivqlsgt	110	9	the	the	DT
cord-345211-4ivqlsgt	110	10	clinical	clinical	JJ
cord-345211-4ivqlsgt	110	11	specimen	specimen	NN
cord-345211-4ivqlsgt	110	12	?	?	.
cord-345211-4ivqlsgt	111	1	Second	second	RB
cord-345211-4ivqlsgt	111	2	,	,	,
cord-345211-4ivqlsgt	111	3	if	if	IN
cord-345211-4ivqlsgt	111	4	the	the	DT
cord-345211-4ivqlsgt	111	5	microorganism	microorganism	NN
cord-345211-4ivqlsgt	111	6	is	be	VBZ
cord-345211-4ivqlsgt	111	7	present	present	JJ
cord-345211-4ivqlsgt	111	8	,	,	,
cord-345211-4ivqlsgt	111	9	is	be	VBZ
cord-345211-4ivqlsgt	111	10	it	-PRON-	PRP
cord-345211-4ivqlsgt	111	11	causing	cause	VBG
cord-345211-4ivqlsgt	111	12	this	this	DT
cord-345211-4ivqlsgt	111	13	episode	episode	NN
cord-345211-4ivqlsgt	111	14	of	of	IN
cord-345211-4ivqlsgt	111	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	111	16	?	?	.
cord-345211-4ivqlsgt	112	1	To	to	IN
cord-345211-4ivqlsgt	112	2	date	date	NN
cord-345211-4ivqlsgt	112	3	,	,	,
cord-345211-4ivqlsgt	112	4	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	112	5	efforts	effort	NNS
cord-345211-4ivqlsgt	112	6	have	have	VBP
cord-345211-4ivqlsgt	112	7	focused	focus	VBN
cord-345211-4ivqlsgt	112	8	almost	almost	RB
cord-345211-4ivqlsgt	112	9	exclusively	exclusively	RB
cord-345211-4ivqlsgt	112	10	on	on	IN
cord-345211-4ivqlsgt	112	11	the	the	DT
cord-345211-4ivqlsgt	112	12	first	first	JJ
cord-345211-4ivqlsgt	112	13	question	question	NN
cord-345211-4ivqlsgt	112	14	and	and	CC
cord-345211-4ivqlsgt	112	15	have	have	VBP
cord-345211-4ivqlsgt	112	16	ignored	ignore	VBN
cord-345211-4ivqlsgt	112	17	the	the	DT
cord-345211-4ivqlsgt	112	18	second	second	JJ
cord-345211-4ivqlsgt	112	19	,	,	,
cord-345211-4ivqlsgt	112	20	which	which	WDT
cord-345211-4ivqlsgt	112	21	is	be	VBZ
cord-345211-4ivqlsgt	112	22	usually	usually	RB
cord-345211-4ivqlsgt	112	23	much	much	RB
cord-345211-4ivqlsgt	112	24	more	more	RBR
cord-345211-4ivqlsgt	112	25	difficult	difficult	JJ
cord-345211-4ivqlsgt	112	26	to	to	TO
cord-345211-4ivqlsgt	112	27	answer	answer	VB
cord-345211-4ivqlsgt	112	28	unless	unless	IN
cord-345211-4ivqlsgt	112	29	the	the	DT
cord-345211-4ivqlsgt	112	30	microorganism	microorganism	NN
cord-345211-4ivqlsgt	112	31	is	be	VBZ
cord-345211-4ivqlsgt	112	32	never	never	RB
cord-345211-4ivqlsgt	112	33	present	present	JJ
cord-345211-4ivqlsgt	112	34	as	as	IN
cord-345211-4ivqlsgt	112	35	a	a	DT
cord-345211-4ivqlsgt	112	36	colonizer	colonizer	NN
cord-345211-4ivqlsgt	112	37	(	(	-LRB-
cord-345211-4ivqlsgt	112	38	e.g.	e.g.	RB
cord-345211-4ivqlsgt	112	39	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	112	40	spp	spp	NNP
cord-345211-4ivqlsgt	112	41	.	.	.
cord-345211-4ivqlsgt	112	42	)	)	-RRB-
cord-345211-4ivqlsgt	112	43	.	.	.
cord-345211-4ivqlsgt	113	1	The	the	DT
cord-345211-4ivqlsgt	113	2	efforts	effort	NNS
cord-345211-4ivqlsgt	113	3	to	to	TO
cord-345211-4ivqlsgt	113	4	use	use	VB
cord-345211-4ivqlsgt	113	5	NATs	NATs	NNP
cord-345211-4ivqlsgt	113	6	as	as	IN
cord-345211-4ivqlsgt	113	7	a	a	DT
cord-345211-4ivqlsgt	113	8	diagnostic	diagnostic	NN
cord-345211-4ivqlsgt	113	9	for	for	IN
cord-345211-4ivqlsgt	113	10	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	113	11	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	113	12	illustrate	illustrate	VBP
cord-345211-4ivqlsgt	113	13	some	some	DT
cord-345211-4ivqlsgt	113	14	of	of	IN
cord-345211-4ivqlsgt	113	15	the	the	DT
cord-345211-4ivqlsgt	113	16	key	key	JJ
cord-345211-4ivqlsgt	113	17	issues	issue	NNS
cord-345211-4ivqlsgt	113	18	.	.	.
cord-345211-4ivqlsgt	114	1	S.	S.	NNP
cord-345211-4ivqlsgt	114	2	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	114	3	is	be	VBZ
cord-345211-4ivqlsgt	114	4	regarded	regard	VBN
cord-345211-4ivqlsgt	114	5	as	as	IN
cord-345211-4ivqlsgt	114	6	the	the	DT
cord-345211-4ivqlsgt	114	7	most	most	RBS
cord-345211-4ivqlsgt	114	8	common	common	JJ
cord-345211-4ivqlsgt	114	9	cause	cause	NN
cord-345211-4ivqlsgt	114	10	of	of	IN
cord-345211-4ivqlsgt	114	11	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	114	12	in	in	IN
cord-345211-4ivqlsgt	114	13	all	all	DT
cord-345211-4ivqlsgt	114	14	age	age	NN
cord-345211-4ivqlsgt	114	15	groups	group	NNS
cord-345211-4ivqlsgt	114	16	and	and	CC
cord-345211-4ivqlsgt	114	17	yet	yet	RB
cord-345211-4ivqlsgt	114	18	,	,	,
cord-345211-4ivqlsgt	114	19	molecular	molecular	JJ
cord-345211-4ivqlsgt	114	20	tests	test	NNS
cord-345211-4ivqlsgt	114	21	do	do	VBP
cord-345211-4ivqlsgt	114	22	not	not	RB
cord-345211-4ivqlsgt	114	23	have	have	VB
cord-345211-4ivqlsgt	114	24	an	an	DT
cord-345211-4ivqlsgt	114	25	established	establish	VBN
cord-345211-4ivqlsgt	114	26	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	114	27	role	role	NN
cord-345211-4ivqlsgt	114	28	[	[	-LRB-
cord-345211-4ivqlsgt	114	29	57	57	CD
cord-345211-4ivqlsgt	114	30	]	]	-RRB-
cord-345211-4ivqlsgt	114	31	.	.	.
cord-345211-4ivqlsgt	115	1	S.	S.	NNP
cord-345211-4ivqlsgt	115	2	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	115	3	is	be	VBZ
cord-345211-4ivqlsgt	115	4	also	also	RB
cord-345211-4ivqlsgt	115	5	a	a	DT
cord-345211-4ivqlsgt	115	6	common	common	JJ
cord-345211-4ivqlsgt	115	7	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	115	8	colonizer	colonizer	NN
cord-345211-4ivqlsgt	115	9	,	,	,
cord-345211-4ivqlsgt	115	10	with	with	IN
cord-345211-4ivqlsgt	115	11	carriage	carriage	NN
cord-345211-4ivqlsgt	115	12	prevalence	prevalence	NN
cord-345211-4ivqlsgt	115	13	exceeding	exceed	VBG
cord-345211-4ivqlsgt	115	14	50	50	CD
cord-345211-4ivqlsgt	115	15	%	%	NN
cord-345211-4ivqlsgt	115	16	among	among	IN
cord-345211-4ivqlsgt	115	17	children	child	NNS
cord-345211-4ivqlsgt	115	18	in	in	IN
cord-345211-4ivqlsgt	115	19	some	some	DT
cord-345211-4ivqlsgt	115	20	regions	region	NNS
cord-345211-4ivqlsgt	115	21	of	of	IN
cord-345211-4ivqlsgt	115	22	the	the	DT
cord-345211-4ivqlsgt	115	23	world	world	NN
cord-345211-4ivqlsgt	115	24	[	[	-LRB-
cord-345211-4ivqlsgt	115	25	58	58	CD
cord-345211-4ivqlsgt	115	26	]	]	-RRB-
cord-345211-4ivqlsgt	115	27	.	.	.
cord-345211-4ivqlsgt	116	1	Earlier	early	RBR
cord-345211-4ivqlsgt	116	2	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	116	3	PCR	pcr	NN
cord-345211-4ivqlsgt	116	4	assays	assay	NNS
cord-345211-4ivqlsgt	116	5	,	,	,
cord-345211-4ivqlsgt	116	6	such	such	JJ
cord-345211-4ivqlsgt	116	7	as	as	IN
cord-345211-4ivqlsgt	116	8	those	those	DT
cord-345211-4ivqlsgt	116	9	targeting	target	VBG
cord-345211-4ivqlsgt	116	10	the	the	DT
cord-345211-4ivqlsgt	116	11	pneumolysin	pneumolysin	NNP
cord-345211-4ivqlsgt	116	12	gene	gene	NN
cord-345211-4ivqlsgt	116	13	,	,	,
cord-345211-4ivqlsgt	116	14	had	have	VBD
cord-345211-4ivqlsgt	116	15	problems	problem	NNS
cord-345211-4ivqlsgt	116	16	of	of	IN
cord-345211-4ivqlsgt	116	17	poor	poor	JJ
cord-345211-4ivqlsgt	116	18	specificity	specificity	NN
cord-345211-4ivqlsgt	116	19	due	due	IN
cord-345211-4ivqlsgt	116	20	to	to	IN
cord-345211-4ivqlsgt	116	21	detection	detection	NN
cord-345211-4ivqlsgt	116	22	of	of	IN
cord-345211-4ivqlsgt	116	23	other	other	JJ
cord-345211-4ivqlsgt	116	24	,	,	,
cord-345211-4ivqlsgt	116	25	closely	closely	RB
cord-345211-4ivqlsgt	116	26	related	related	JJ
cord-345211-4ivqlsgt	116	27	streptococci	streptococcus	NNS
cord-345211-4ivqlsgt	116	28	[	[	-LRB-
cord-345211-4ivqlsgt	116	29	59	59	CD
cord-345211-4ivqlsgt	116	30	]	]	-RRB-
cord-345211-4ivqlsgt	116	31	,	,	,
cord-345211-4ivqlsgt	116	32	although	although	IN
cord-345211-4ivqlsgt	116	33	false	false	JJ
cord-345211-4ivqlsgt	116	34	-	-	HYPH
cord-345211-4ivqlsgt	116	35	positive	positive	JJ
cord-345211-4ivqlsgt	116	36	results	result	NNS
cord-345211-4ivqlsgt	116	37	are	be	VBP
cord-345211-4ivqlsgt	116	38	less	less	RBR
cord-345211-4ivqlsgt	116	39	likely	likely	JJ
cord-345211-4ivqlsgt	116	40	with	with	IN
cord-345211-4ivqlsgt	116	41	some	some	DT
cord-345211-4ivqlsgt	116	42	of	of	IN
cord-345211-4ivqlsgt	116	43	the	the	DT
cord-345211-4ivqlsgt	116	44	currently	currently	RB
cord-345211-4ivqlsgt	116	45	more	more	RBR
cord-345211-4ivqlsgt	116	46	widely	widely	RB
cord-345211-4ivqlsgt	116	47	used	use	VBN
cord-345211-4ivqlsgt	116	48	targets	target	NNS
cord-345211-4ivqlsgt	116	49	(	(	-LRB-
cord-345211-4ivqlsgt	116	50	e.g.	e.g.	RB
cord-345211-4ivqlsgt	116	51	autolysin	autolysin	NNP
cord-345211-4ivqlsgt	116	52	gene	gene	NN
cord-345211-4ivqlsgt	116	53	)	)	-RRB-
cord-345211-4ivqlsgt	116	54	[	[	-LRB-
cord-345211-4ivqlsgt	116	55	60	60	CD
cord-345211-4ivqlsgt	116	56	]	]	-RRB-
cord-345211-4ivqlsgt	116	57	.	.	.
cord-345211-4ivqlsgt	117	1	S.	S.	NNP
cord-345211-4ivqlsgt	117	2	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	117	3	is	be	VBZ
cord-345211-4ivqlsgt	117	4	frequently	frequently	RB
cord-345211-4ivqlsgt	117	5	detected	detect	VBN
cord-345211-4ivqlsgt	117	6	by	by	IN
cord-345211-4ivqlsgt	117	7	NATs	nat	NNS
cord-345211-4ivqlsgt	117	8	in	in	IN
cord-345211-4ivqlsgt	117	9	both	both	CC
cord-345211-4ivqlsgt	117	10	upper	upper	JJ
cord-345211-4ivqlsgt	117	11	and	and	CC
cord-345211-4ivqlsgt	117	12	lower	low	JJR
cord-345211-4ivqlsgt	117	13	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	117	14	specimens	specimen	NNS
cord-345211-4ivqlsgt	117	15	from	from	IN
cord-345211-4ivqlsgt	117	16	patients	patient	NNS
cord-345211-4ivqlsgt	117	17	with	with	IN
cord-345211-4ivqlsgt	117	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	117	19	[	[	-LRB-
cord-345211-4ivqlsgt	117	20	59	59	CD
cord-345211-4ivqlsgt	117	21	]	]	-RRB-
cord-345211-4ivqlsgt	117	22	,	,	,
cord-345211-4ivqlsgt	117	23	but	but	CC
cord-345211-4ivqlsgt	117	24	the	the	DT
cord-345211-4ivqlsgt	117	25	clinical	clinical	JJ
cord-345211-4ivqlsgt	117	26	implications	implication	NNS
cord-345211-4ivqlsgt	117	27	of	of	IN
cord-345211-4ivqlsgt	117	28	a	a	DT
cord-345211-4ivqlsgt	117	29	positive	positive	JJ
cord-345211-4ivqlsgt	117	30	result	result	NN
cord-345211-4ivqlsgt	117	31	are	be	VBP
cord-345211-4ivqlsgt	117	32	uncertain	uncertain	JJ
cord-345211-4ivqlsgt	117	33	given	give	VBN
cord-345211-4ivqlsgt	117	34	the	the	DT
cord-345211-4ivqlsgt	117	35	relative	relative	JJ
cord-345211-4ivqlsgt	117	36	high	high	JJ
cord-345211-4ivqlsgt	117	37	prevalence	prevalence	NN
cord-345211-4ivqlsgt	117	38	of	of	IN
cord-345211-4ivqlsgt	117	39	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	117	40	carriage	carriage	NN
cord-345211-4ivqlsgt	117	41	.	.	.
cord-345211-4ivqlsgt	118	1	Testing	testing	NN
cord-345211-4ivqlsgt	118	2	of	of	IN
cord-345211-4ivqlsgt	118	3	blood	blood	NN
cord-345211-4ivqlsgt	118	4	for	for	IN
cord-345211-4ivqlsgt	118	5	S.	S.	NNP
cord-345211-4ivqlsgt	118	6	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	118	7	by	by	IN
cord-345211-4ivqlsgt	118	8	PCR	PCR	NNP
cord-345211-4ivqlsgt	118	9	has	have	VBZ
cord-345211-4ivqlsgt	118	10	been	be	VBN
cord-345211-4ivqlsgt	118	11	promoted	promote	VBN
cord-345211-4ivqlsgt	118	12	as	as	IN
cord-345211-4ivqlsgt	118	13	an	an	DT
cord-345211-4ivqlsgt	118	14	alternative	alternative	JJ
cord-345211-4ivqlsgt	118	15	approach	approach	NN
cord-345211-4ivqlsgt	118	16	that	that	WDT
cord-345211-4ivqlsgt	118	17	can	can	MD
cord-345211-4ivqlsgt	118	18	potentially	potentially	RB
cord-345211-4ivqlsgt	118	19	avoid	avoid	VB
cord-345211-4ivqlsgt	118	20	issues	issue	NNS
cord-345211-4ivqlsgt	118	21	of	of	IN
cord-345211-4ivqlsgt	118	22	contamination	contamination	NN
cord-345211-4ivqlsgt	118	23	.	.	.
cord-345211-4ivqlsgt	119	1	Among	among	IN
cord-345211-4ivqlsgt	119	2	Italian	italian	JJ
cord-345211-4ivqlsgt	119	3	children	child	NNS
cord-345211-4ivqlsgt	119	4	,	,	,
cord-345211-4ivqlsgt	119	5	blood	blood	NN
cord-345211-4ivqlsgt	119	6	PCR	PCR	NNP
cord-345211-4ivqlsgt	119	7	showed	show	VBD
cord-345211-4ivqlsgt	119	8	promise	promise	NN
cord-345211-4ivqlsgt	119	9	as	as	IN
cord-345211-4ivqlsgt	119	10	a	a	DT
cord-345211-4ivqlsgt	119	11	diagnostic	diagnostic	NN
cord-345211-4ivqlsgt	119	12	for	for	IN
cord-345211-4ivqlsgt	119	13	invasive	invasive	JJ
cord-345211-4ivqlsgt	119	14	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	119	15	disease	disease	NN
cord-345211-4ivqlsgt	119	16	[	[	-LRB-
cord-345211-4ivqlsgt	119	17	61	61	CD
cord-345211-4ivqlsgt	119	18	]	]	-RRB-
cord-345211-4ivqlsgt	119	19	[	[	-LRB-
cord-345211-4ivqlsgt	119	20	62	62	CD
cord-345211-4ivqlsgt	119	21	]	]	-RRB-
cord-345211-4ivqlsgt	119	22	[	[	-LRB-
cord-345211-4ivqlsgt	119	23	63	63	CD
cord-345211-4ivqlsgt	119	24	]	]	-RRB-
cord-345211-4ivqlsgt	119	25	[	[	-LRB-
cord-345211-4ivqlsgt	119	26	64	64	CD
cord-345211-4ivqlsgt	119	27	]	]	-RRB-
cord-345211-4ivqlsgt	120	1	with	with	IN
cord-345211-4ivqlsgt	120	2	high	high	JJ
cord-345211-4ivqlsgt	120	3	specificity	specificity	NN
cord-345211-4ivqlsgt	120	4	[	[	-LRB-
cord-345211-4ivqlsgt	120	5	65	65	CD
cord-345211-4ivqlsgt	120	6	]	]	-RRB-
cord-345211-4ivqlsgt	120	7	.	.	.
cord-345211-4ivqlsgt	121	1	However	however	RB
cord-345211-4ivqlsgt	121	2	,	,	,
cord-345211-4ivqlsgt	121	3	in	in	IN
cord-345211-4ivqlsgt	121	4	other	other	JJ
cord-345211-4ivqlsgt	121	5	populations	population	NNS
cord-345211-4ivqlsgt	121	6	,	,	,
cord-345211-4ivqlsgt	121	7	positive	positive	JJ
cord-345211-4ivqlsgt	121	8	results	result	NNS
cord-345211-4ivqlsgt	121	9	have	have	VBP
cord-345211-4ivqlsgt	121	10	been	be	VBN
cord-345211-4ivqlsgt	121	11	reported	report	VBN
cord-345211-4ivqlsgt	121	12	in	in	IN
cord-345211-4ivqlsgt	121	13	control	control	NN
cord-345211-4ivqlsgt	121	14	participants	participant	NNS
cord-345211-4ivqlsgt	121	15	who	who	WP
cord-345211-4ivqlsgt	121	16	do	do	VBP
cord-345211-4ivqlsgt	121	17	not	not	RB
cord-345211-4ivqlsgt	121	18	have	have	VB
cord-345211-4ivqlsgt	121	19	suspected	suspect	VBN
cord-345211-4ivqlsgt	121	20	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	121	21	disease	disease	NN
cord-345211-4ivqlsgt	121	22	[	[	-LRB-
cord-345211-4ivqlsgt	121	23	66	66	CD
cord-345211-4ivqlsgt	121	24	]	]	-RRB-
cord-345211-4ivqlsgt	121	25	,	,	,
cord-345211-4ivqlsgt	121	26	raising	raise	VBG
cord-345211-4ivqlsgt	121	27	concerns	concern	NNS
cord-345211-4ivqlsgt	121	28	about	about	IN
cord-345211-4ivqlsgt	121	29	the	the	DT
cord-345211-4ivqlsgt	121	30	broader	broad	JJR
cord-345211-4ivqlsgt	121	31	utility	utility	NN
cord-345211-4ivqlsgt	121	32	of	of	IN
cord-345211-4ivqlsgt	121	33	this	this	DT
cord-345211-4ivqlsgt	121	34	approach	approach	NN
cord-345211-4ivqlsgt	121	35	.	.	.
cord-345211-4ivqlsgt	122	1	In	in	IN
cord-345211-4ivqlsgt	122	2	particular	particular	JJ
cord-345211-4ivqlsgt	122	3	,	,	,
cord-345211-4ivqlsgt	122	4	false	false	JJ
cord-345211-4ivqlsgt	122	5	-	-	HYPH
cord-345211-4ivqlsgt	122	6	positive	positive	JJ
cord-345211-4ivqlsgt	122	7	results	result	NNS
cord-345211-4ivqlsgt	122	8	are	be	VBP
cord-345211-4ivqlsgt	122	9	relatively	relatively	RB
cord-345211-4ivqlsgt	122	10	common	common	JJ
cord-345211-4ivqlsgt	122	11	in	in	IN
cord-345211-4ivqlsgt	122	12	children	child	NNS
cord-345211-4ivqlsgt	122	13	from	from	IN
cord-345211-4ivqlsgt	122	14	developing	develop	VBG
cord-345211-4ivqlsgt	122	15	countries	country	NNS
cord-345211-4ivqlsgt	122	16	where	where	WRB
cord-345211-4ivqlsgt	122	17	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	122	18	carriage	carriage	NN
cord-345211-4ivqlsgt	122	19	is	be	VBZ
cord-345211-4ivqlsgt	122	20	common	common	JJ
cord-345211-4ivqlsgt	122	21	[	[	-LRB-
cord-345211-4ivqlsgt	122	22	67	67	CD
cord-345211-4ivqlsgt	122	23	]	]	-RRB-
cord-345211-4ivqlsgt	122	24	.	.	.
cord-345211-4ivqlsgt	123	1	Consequently	consequently	RB
cord-345211-4ivqlsgt	123	2	,	,	,
cord-345211-4ivqlsgt	123	3	a	a	DT
cord-345211-4ivqlsgt	123	4	positive	positive	JJ
cord-345211-4ivqlsgt	123	5	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	123	6	NAT	NAT	NNP
cord-345211-4ivqlsgt	123	7	result	result	NN
cord-345211-4ivqlsgt	123	8	alone	alone	RB
cord-345211-4ivqlsgt	123	9	is	be	VBZ
cord-345211-4ivqlsgt	123	10	usually	usually	RB
cord-345211-4ivqlsgt	123	11	not	not	RB
cord-345211-4ivqlsgt	123	12	enough	enough	JJ
cord-345211-4ivqlsgt	123	13	to	to	TO
cord-345211-4ivqlsgt	123	14	diagnose	diagnose	VB
cord-345211-4ivqlsgt	123	15	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	123	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	123	17	.	.	.
cord-345211-4ivqlsgt	124	1	The	the	DT
cord-345211-4ivqlsgt	124	2	possible	possible	JJ
cord-345211-4ivqlsgt	124	3	exception	exception	NN
cord-345211-4ivqlsgt	124	4	is	be	VBZ
cord-345211-4ivqlsgt	124	5	the	the	DT
cord-345211-4ivqlsgt	124	6	use	use	NN
cord-345211-4ivqlsgt	124	7	of	of	IN
cord-345211-4ivqlsgt	124	8	NATs	NATs	NNP
cord-345211-4ivqlsgt	124	9	to	to	TO
cord-345211-4ivqlsgt	124	10	detect	detect	VB
cord-345211-4ivqlsgt	124	11	S.	S.	NNP
cord-345211-4ivqlsgt	124	12	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	124	13	in	in	IN
cord-345211-4ivqlsgt	124	14	pleural	pleural	JJ
cord-345211-4ivqlsgt	124	15	fluid	fluid	NN
cord-345211-4ivqlsgt	124	16	[	[	-LRB-
cord-345211-4ivqlsgt	124	17	68	68	CD
cord-345211-4ivqlsgt	124	18	,	,	,
cord-345211-4ivqlsgt	124	19	69	69	CD
cord-345211-4ivqlsgt	124	20	]	]	-RRB-
cord-345211-4ivqlsgt	124	21	.	.	.
cord-345211-4ivqlsgt	125	1	Another	another	DT
cord-345211-4ivqlsgt	125	2	important	important	JJ
cord-345211-4ivqlsgt	125	3	limitation	limitation	NN
cord-345211-4ivqlsgt	125	4	with	with	IN
cord-345211-4ivqlsgt	125	5	current	current	JJ
cord-345211-4ivqlsgt	125	6	NATs	NATs	NNP
cord-345211-4ivqlsgt	125	7	is	be	VBZ
cord-345211-4ivqlsgt	125	8	their	-PRON-	PRP$
cord-345211-4ivqlsgt	125	9	focus	focus	NN
cord-345211-4ivqlsgt	125	10	,	,	,
cord-345211-4ivqlsgt	125	11	by	by	IN
cord-345211-4ivqlsgt	125	12	nature	nature	NN
cord-345211-4ivqlsgt	125	13	,	,	,
cord-345211-4ivqlsgt	125	14	on	on	IN
cord-345211-4ivqlsgt	125	15	specific	specific	JJ
cord-345211-4ivqlsgt	125	16	known	know	VBN
cord-345211-4ivqlsgt	125	17	or	or	CC
cord-345211-4ivqlsgt	125	18	suspected	suspect	VBN
cord-345211-4ivqlsgt	125	19	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	125	20	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	125	21	.	.	.
cord-345211-4ivqlsgt	126	1	Implicit	implicit	JJ
cord-345211-4ivqlsgt	126	2	with	with	IN
cord-345211-4ivqlsgt	126	3	this	this	DT
cord-345211-4ivqlsgt	126	4	focus	focus	NN
cord-345211-4ivqlsgt	126	5	is	be	VBZ
cord-345211-4ivqlsgt	126	6	the	the	DT
cord-345211-4ivqlsgt	126	7	assumption	assumption	NN
cord-345211-4ivqlsgt	126	8	that	that	IN
cord-345211-4ivqlsgt	126	9	we	-PRON-	PRP
cord-345211-4ivqlsgt	126	10	know	know	VBP
cord-345211-4ivqlsgt	126	11	the	the	DT
cord-345211-4ivqlsgt	126	12	full	full	JJ
cord-345211-4ivqlsgt	126	13	range	range	NN
cord-345211-4ivqlsgt	126	14	of	of	IN
cord-345211-4ivqlsgt	126	15	key	key	JJ
cord-345211-4ivqlsgt	126	16	potential	potential	JJ
cord-345211-4ivqlsgt	126	17	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	126	18	that	that	WDT
cord-345211-4ivqlsgt	126	19	cause	cause	VBP
cord-345211-4ivqlsgt	126	20	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	126	21	.	.	.
cord-345211-4ivqlsgt	127	1	This	this	DT
cord-345211-4ivqlsgt	127	2	may	may	MD
cord-345211-4ivqlsgt	127	3	well	well	RB
cord-345211-4ivqlsgt	127	4	be	be	VB
cord-345211-4ivqlsgt	127	5	correct	correct	JJ
cord-345211-4ivqlsgt	127	6	,	,	,
cord-345211-4ivqlsgt	127	7	but	but	CC
cord-345211-4ivqlsgt	127	8	there	there	EX
cord-345211-4ivqlsgt	127	9	is	be	VBZ
cord-345211-4ivqlsgt	127	10	increasing	increase	VBG
cord-345211-4ivqlsgt	127	11	interest	interest	NN
cord-345211-4ivqlsgt	127	12	in	in	IN
cord-345211-4ivqlsgt	127	13	the	the	DT
cord-345211-4ivqlsgt	127	14	use	use	NN
cord-345211-4ivqlsgt	127	15	of	of	IN
cord-345211-4ivqlsgt	127	16	modern	modern	JJ
cord-345211-4ivqlsgt	127	17	techniques	technique	NNS
cord-345211-4ivqlsgt	127	18	,	,	,
cord-345211-4ivqlsgt	127	19	such	such	JJ
cord-345211-4ivqlsgt	127	20	as	as	IN
cord-345211-4ivqlsgt	127	21	next	next	JJ
cord-345211-4ivqlsgt	127	22	generation	generation	NN
cord-345211-4ivqlsgt	127	23	sequencing	sequencing	NN
cord-345211-4ivqlsgt	127	24	,	,	,
cord-345211-4ivqlsgt	127	25	which	which	WDT
cord-345211-4ivqlsgt	127	26	provide	provide	VBP
cord-345211-4ivqlsgt	127	27	the	the	DT
cord-345211-4ivqlsgt	127	28	opportunity	opportunity	NN
cord-345211-4ivqlsgt	127	29	for	for	IN
cord-345211-4ivqlsgt	127	30	discovering	discover	VBG
cord-345211-4ivqlsgt	127	31	new	new	JJ
cord-345211-4ivqlsgt	127	32	or	or	CC
cord-345211-4ivqlsgt	127	33	unexpected	unexpected	JJ
cord-345211-4ivqlsgt	127	34	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	127	35	[	[	-LRB-
cord-345211-4ivqlsgt	127	36	70	70	CD
cord-345211-4ivqlsgt	127	37	,	,	,
cord-345211-4ivqlsgt	127	38	71	71	CD
cord-345211-4ivqlsgt	127	39	]	]	-RRB-
cord-345211-4ivqlsgt	127	40	.	.	.
cord-345211-4ivqlsgt	128	1	The	the	DT
cord-345211-4ivqlsgt	128	2	broader	broad	JJR
cord-345211-4ivqlsgt	128	3	approach	approach	NN
cord-345211-4ivqlsgt	128	4	of	of	IN
cord-345211-4ivqlsgt	128	5	these	these	DT
cord-345211-4ivqlsgt	128	6	technologies	technology	NNS
cord-345211-4ivqlsgt	128	7	may	may	MD
cord-345211-4ivqlsgt	128	8	provide	provide	VB
cord-345211-4ivqlsgt	128	9	novel	novel	JJ
cord-345211-4ivqlsgt	128	10	insights	insight	NNS
cord-345211-4ivqlsgt	128	11	into	into	IN
cord-345211-4ivqlsgt	128	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	128	13	etiology	etiology	NN
cord-345211-4ivqlsgt	128	14	,	,	,
cord-345211-4ivqlsgt	128	15	but	but	CC
cord-345211-4ivqlsgt	128	16	have	have	VBP
cord-345211-4ivqlsgt	128	17	yet	yet	RB
cord-345211-4ivqlsgt	128	18	to	to	TO
cord-345211-4ivqlsgt	128	19	show	show	VB
cord-345211-4ivqlsgt	128	20	added	add	VBN
cord-345211-4ivqlsgt	128	21	advantage	advantage	NN
cord-345211-4ivqlsgt	128	22	as	as	IN
cord-345211-4ivqlsgt	128	23	a	a	DT
cord-345211-4ivqlsgt	128	24	routine	routine	JJ
cord-345211-4ivqlsgt	128	25	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	128	26	tool	tool	NN
cord-345211-4ivqlsgt	128	27	[	[	-LRB-
cord-345211-4ivqlsgt	128	28	72	72	CD
cord-345211-4ivqlsgt	128	29	]	]	-RRB-
cord-345211-4ivqlsgt	128	30	.	.	.
cord-345211-4ivqlsgt	129	1	No	no	DT
cord-345211-4ivqlsgt	129	2	major	major	JJ
cord-345211-4ivqlsgt	129	3	new	new	JJ
cord-345211-4ivqlsgt	129	4	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	129	5	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	129	6	have	have	VBP
cord-345211-4ivqlsgt	129	7	been	be	VBN
cord-345211-4ivqlsgt	129	8	uncovered	uncover	VBN
cord-345211-4ivqlsgt	129	9	over	over	IN
cord-345211-4ivqlsgt	129	10	recent	recent	JJ
cord-345211-4ivqlsgt	129	11	years	year	NNS
cord-345211-4ivqlsgt	129	12	.	.	.
cord-345211-4ivqlsgt	130	1	A	a	DT
cord-345211-4ivqlsgt	130	2	key	key	JJ
cord-345211-4ivqlsgt	130	3	reason	reason	NN
cord-345211-4ivqlsgt	130	4	for	for	IN
cord-345211-4ivqlsgt	130	5	the	the	DT
cord-345211-4ivqlsgt	130	6	slow	slow	JJ
cord-345211-4ivqlsgt	130	7	adoption	adoption	NN
cord-345211-4ivqlsgt	130	8	of	of	IN
cord-345211-4ivqlsgt	130	9	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	130	10	NATs	nat	NNS
cord-345211-4ivqlsgt	130	11	by	by	IN
cord-345211-4ivqlsgt	130	12	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	130	13	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	130	14	is	be	VBZ
cord-345211-4ivqlsgt	130	15	the	the	DT
cord-345211-4ivqlsgt	130	16	lack	lack	NN
cord-345211-4ivqlsgt	130	17	of	of	IN
cord-345211-4ivqlsgt	130	18	commercial	commercial	JJ
cord-345211-4ivqlsgt	130	19	assays	assay	NNS
cord-345211-4ivqlsgt	130	20	that	that	WDT
cord-345211-4ivqlsgt	130	21	have	have	VBP
cord-345211-4ivqlsgt	130	22	been	be	VBN
cord-345211-4ivqlsgt	130	23	approved	approve	VBN
cord-345211-4ivqlsgt	130	24	by	by	IN
cord-345211-4ivqlsgt	130	25	regulatory	regulatory	JJ
cord-345211-4ivqlsgt	130	26	bodies	body	NNS
cord-345211-4ivqlsgt	130	27	.	.	.
cord-345211-4ivqlsgt	131	1	The	the	DT
cord-345211-4ivqlsgt	131	2	impact	impact	NN
cord-345211-4ivqlsgt	131	3	has	have	VBZ
cord-345211-4ivqlsgt	131	4	probably	probably	RB
cord-345211-4ivqlsgt	131	5	been	be	VBN
cord-345211-4ivqlsgt	131	6	felt	feel	VBN
cord-345211-4ivqlsgt	131	7	more	more	JJR
cord-345211-4ivqlsgt	131	8	in	in	IN
cord-345211-4ivqlsgt	131	9	the	the	DT
cord-345211-4ivqlsgt	131	10	USA	USA	NNP
cord-345211-4ivqlsgt	131	11	given	give	VBD
cord-345211-4ivqlsgt	131	12	the	the	DT
cord-345211-4ivqlsgt	131	13	strict	strict	JJ
cord-345211-4ivqlsgt	131	14	requirements	requirement	NNS
cord-345211-4ivqlsgt	131	15	of	of	IN
cord-345211-4ivqlsgt	131	16	the	the	DT
cord-345211-4ivqlsgt	131	17	US	US	NNP
cord-345211-4ivqlsgt	131	18	FDA	FDA	NNP
cord-345211-4ivqlsgt	131	19	.	.	.
cord-345211-4ivqlsgt	132	1	The	the	DT
cord-345211-4ivqlsgt	132	2	level	level	NN
cord-345211-4ivqlsgt	132	3	and	and	CC
cord-345211-4ivqlsgt	132	4	importance	importance	NN
cord-345211-4ivqlsgt	132	5	of	of	IN
cord-345211-4ivqlsgt	132	6	regulation	regulation	NN
cord-345211-4ivqlsgt	132	7	have	have	VBP
cord-345211-4ivqlsgt	132	8	been	be	VBN
cord-345211-4ivqlsgt	132	9	debated	debate	VBN
cord-345211-4ivqlsgt	132	10	[	[	-LRB-
cord-345211-4ivqlsgt	132	11	73	73	CD
cord-345211-4ivqlsgt	132	12	,	,	,
cord-345211-4ivqlsgt	132	13	74	74	CD
cord-345211-4ivqlsgt	132	14	]	]	-RRB-
cord-345211-4ivqlsgt	132	15	,	,	,
cord-345211-4ivqlsgt	132	16	and	and	CC
cord-345211-4ivqlsgt	132	17	it	-PRON-	PRP
cord-345211-4ivqlsgt	132	18	is	be	VBZ
cord-345211-4ivqlsgt	132	19	clear	clear	JJ
cord-345211-4ivqlsgt	132	20	that	that	IN
cord-345211-4ivqlsgt	132	21	a	a	DT
cord-345211-4ivqlsgt	132	22	balance	balance	NN
cord-345211-4ivqlsgt	132	23	is	be	VBZ
cord-345211-4ivqlsgt	132	24	needed	need	VBN
cord-345211-4ivqlsgt	132	25	between	between	IN
cord-345211-4ivqlsgt	132	26	appropriate	appropriate	JJ
cord-345211-4ivqlsgt	132	27	regulation	regulation	NN
cord-345211-4ivqlsgt	132	28	of	of	IN
cord-345211-4ivqlsgt	132	29	new	new	JJ
cord-345211-4ivqlsgt	132	30	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	132	31	,	,	,
cord-345211-4ivqlsgt	132	32	while	while	IN
cord-345211-4ivqlsgt	132	33	avoiding	avoid	VBG
cord-345211-4ivqlsgt	132	34	unnecessary	unnecessary	JJ
cord-345211-4ivqlsgt	132	35	barriers	barrier	NNS
cord-345211-4ivqlsgt	132	36	to	to	IN
cord-345211-4ivqlsgt	132	37	the	the	DT
cord-345211-4ivqlsgt	132	38	deployment	deployment	NN
cord-345211-4ivqlsgt	132	39	of	of	IN
cord-345211-4ivqlsgt	132	40	useful	useful	JJ
cord-345211-4ivqlsgt	132	41	tests	test	NNS
cord-345211-4ivqlsgt	132	42	.	.	.
cord-345211-4ivqlsgt	133	1	The	the	DT
cord-345211-4ivqlsgt	133	2	use	use	NN
cord-345211-4ivqlsgt	133	3	of	of	IN
cord-345211-4ivqlsgt	133	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	133	5	tests	test	NNS
cord-345211-4ivqlsgt	133	6	for	for	IN
cord-345211-4ivqlsgt	133	7	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	133	8	'	'	POS
cord-345211-4ivqlsgt	133	9	disease	disease	NN
cord-345211-4ivqlsgt	133	10	is	be	VBZ
cord-345211-4ivqlsgt	133	11	a	a	DT
cord-345211-4ivqlsgt	133	12	good	good	JJ
cord-345211-4ivqlsgt	133	13	example	example	NN
cord-345211-4ivqlsgt	133	14	of	of	IN
cord-345211-4ivqlsgt	133	15	how	how	WRB
cord-345211-4ivqlsgt	133	16	assay	assay	NN
cord-345211-4ivqlsgt	133	17	regulation	regulation	NN
cord-345211-4ivqlsgt	133	18	has	have	VBZ
cord-345211-4ivqlsgt	133	19	had	have	VBN
cord-345211-4ivqlsgt	133	20	an	an	DT
cord-345211-4ivqlsgt	133	21	impact	impact	NN
cord-345211-4ivqlsgt	133	22	on	on	IN
cord-345211-4ivqlsgt	133	23	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	133	24	strategies	strategy	NNS
cord-345211-4ivqlsgt	133	25	.	.	.
cord-345211-4ivqlsgt	134	1	Despite	despite	IN
cord-345211-4ivqlsgt	134	2	NATs	nat	NNS
cord-345211-4ivqlsgt	134	3	being	be	VBG
cord-345211-4ivqlsgt	134	4	the	the	DT
cord-345211-4ivqlsgt	134	5	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	134	6	test	test	NN
cord-345211-4ivqlsgt	134	7	of	of	IN
cord-345211-4ivqlsgt	134	8	choice	choice	NN
cord-345211-4ivqlsgt	134	9	for	for	IN
cord-345211-4ivqlsgt	134	10	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	134	11	'	'	POS
cord-345211-4ivqlsgt	134	12	disease	disease	NN
cord-345211-4ivqlsgt	134	13	,	,	,
cord-345211-4ivqlsgt	134	14	the	the	DT
cord-345211-4ivqlsgt	134	15	shortage	shortage	NN
cord-345211-4ivqlsgt	134	16	of	of	IN
cord-345211-4ivqlsgt	134	17	FDA	FDA	NNP
cord-345211-4ivqlsgt	134	18	-	-	HYPH
cord-345211-4ivqlsgt	134	19	approved	approve	VBN
cord-345211-4ivqlsgt	134	20	assays	assay	NNS
cord-345211-4ivqlsgt	134	21	has	have	VBZ
cord-345211-4ivqlsgt	134	22	severely	severely	RB
cord-345211-4ivqlsgt	134	23	limited	limit	VBN
cord-345211-4ivqlsgt	134	24	the	the	DT
cord-345211-4ivqlsgt	134	25	use	use	NN
cord-345211-4ivqlsgt	134	26	of	of	IN
cord-345211-4ivqlsgt	134	27	these	these	DT
cord-345211-4ivqlsgt	134	28	tests	test	NNS
cord-345211-4ivqlsgt	134	29	in	in	IN
cord-345211-4ivqlsgt	134	30	the	the	DT
cord-345211-4ivqlsgt	134	31	USA	USA	NNP
cord-345211-4ivqlsgt	134	32	,	,	,
cord-345211-4ivqlsgt	134	33	resulting	result	VBG
cord-345211-4ivqlsgt	134	34	in	in	IN
cord-345211-4ivqlsgt	134	35	the	the	DT
cord-345211-4ivqlsgt	134	36	continued	continue	VBN
cord-345211-4ivqlsgt	134	37	use	use	NN
cord-345211-4ivqlsgt	134	38	of	of	IN
cord-345211-4ivqlsgt	134	39	suboptimal	suboptimal	JJ
cord-345211-4ivqlsgt	134	40	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	134	41	and	and	CC
cord-345211-4ivqlsgt	134	42	underdiagnosis	underdiagnosis	NN
cord-345211-4ivqlsgt	134	43	of	of	IN
cord-345211-4ivqlsgt	134	44	this	this	DT
cord-345211-4ivqlsgt	134	45	disease	disease	NN
cord-345211-4ivqlsgt	134	46	[	[	-LRB-
cord-345211-4ivqlsgt	134	47	27	27	CD
cord-345211-4ivqlsgt	134	48	]	]	-RRB-
cord-345211-4ivqlsgt	134	49	.	.	.
cord-345211-4ivqlsgt	135	1	Moreover	moreover	RB
cord-345211-4ivqlsgt	135	2	,	,	,
cord-345211-4ivqlsgt	135	3	the	the	DT
cord-345211-4ivqlsgt	135	4	absence	absence	NN
cord-345211-4ivqlsgt	135	5	of	of	IN
cord-345211-4ivqlsgt	135	6	a	a	DT
cord-345211-4ivqlsgt	135	7	prominent	prominent	JJ
cord-345211-4ivqlsgt	135	8	role	role	NN
cord-345211-4ivqlsgt	135	9	in	in	IN
cord-345211-4ivqlsgt	135	10	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	135	11	algorithms	algorithm	NNS
cord-345211-4ivqlsgt	135	12	has	have	VBZ
cord-345211-4ivqlsgt	135	13	possibly	possibly	RB
cord-345211-4ivqlsgt	135	14	led	lead	VBN
cord-345211-4ivqlsgt	135	15	to	to	IN
cord-345211-4ivqlsgt	135	16	an	an	DT
cord-345211-4ivqlsgt	135	17	incorrect	incorrect	JJ
cord-345211-4ivqlsgt	135	18	perception	perception	NN
cord-345211-4ivqlsgt	135	19	that	that	IN
cord-345211-4ivqlsgt	135	20	the	the	DT
cord-345211-4ivqlsgt	135	21	performance	performance	NN
cord-345211-4ivqlsgt	135	22	of	of	IN
cord-345211-4ivqlsgt	135	23	NATs	NATs	NNP
cord-345211-4ivqlsgt	135	24	is	be	VBZ
cord-345211-4ivqlsgt	135	25	inadequate	inadequate	JJ
cord-345211-4ivqlsgt	135	26	.	.	.
cord-345211-4ivqlsgt	136	1	Hopefully	hopefully	RB
cord-345211-4ivqlsgt	136	2	,	,	,
cord-345211-4ivqlsgt	136	3	increased	increase	VBN
cord-345211-4ivqlsgt	136	4	experience	experience	NN
cord-345211-4ivqlsgt	136	5	with	with	IN
cord-345211-4ivqlsgt	136	6	these	these	DT
cord-345211-4ivqlsgt	136	7	tests	test	NNS
cord-345211-4ivqlsgt	136	8	will	will	MD
cord-345211-4ivqlsgt	136	9	reverse	reverse	VB
cord-345211-4ivqlsgt	136	10	this	this	DT
cord-345211-4ivqlsgt	136	11	perception	perception	NN
cord-345211-4ivqlsgt	136	12	.	.	.
cord-345211-4ivqlsgt	137	1	A	a	DT
cord-345211-4ivqlsgt	137	2	major	major	JJ
cord-345211-4ivqlsgt	137	3	recent	recent	JJ
cord-345211-4ivqlsgt	137	4	revelation	revelation	NN
cord-345211-4ivqlsgt	137	5	in	in	IN
cord-345211-4ivqlsgt	137	6	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	137	7	medicine	medicine	NN
cord-345211-4ivqlsgt	137	8	has	have	VBZ
cord-345211-4ivqlsgt	137	9	been	be	VBN
cord-345211-4ivqlsgt	137	10	recognition	recognition	NN
cord-345211-4ivqlsgt	137	11	of	of	IN
cord-345211-4ivqlsgt	137	12	the	the	DT
cord-345211-4ivqlsgt	137	13	lung	lung	NN
cord-345211-4ivqlsgt	137	14	microbiome	microbiome	NN
cord-345211-4ivqlsgt	137	15	[	[	-LRB-
cord-345211-4ivqlsgt	137	16	75	75	CD
cord-345211-4ivqlsgt	137	17	]	]	-RRB-
cord-345211-4ivqlsgt	137	18	.	.	.
cord-345211-4ivqlsgt	138	1	Until	until	IN
cord-345211-4ivqlsgt	138	2	recently	recently	RB
cord-345211-4ivqlsgt	138	3	,	,	,
cord-345211-4ivqlsgt	138	4	the	the	DT
cord-345211-4ivqlsgt	138	5	lungs	lung	NNS
cord-345211-4ivqlsgt	138	6	in	in	IN
cord-345211-4ivqlsgt	138	7	health	health	NN
cord-345211-4ivqlsgt	138	8	were	be	VBD
cord-345211-4ivqlsgt	138	9	regarded	regard	VBN
cord-345211-4ivqlsgt	138	10	as	as	IN
cord-345211-4ivqlsgt	138	11	sterile	sterile	JJ
cord-345211-4ivqlsgt	138	12	.	.	.
cord-345211-4ivqlsgt	139	1	The	the	DT
cord-345211-4ivqlsgt	139	2	use	use	NN
cord-345211-4ivqlsgt	139	3	of	of	IN
cord-345211-4ivqlsgt	139	4	modern	modern	JJ
cord-345211-4ivqlsgt	139	5	culture	culture	NN
cord-345211-4ivqlsgt	139	6	-	-	HYPH
cord-345211-4ivqlsgt	139	7	independent	independent	JJ
cord-345211-4ivqlsgt	139	8	techniques	technique	NNS
cord-345211-4ivqlsgt	139	9	has	have	VBZ
cord-345211-4ivqlsgt	139	10	not	not	RB
cord-345211-4ivqlsgt	139	11	supported	support	VBN
cord-345211-4ivqlsgt	139	12	this	this	DT
cord-345211-4ivqlsgt	139	13	concept	concept	NN
cord-345211-4ivqlsgt	139	14	,	,	,
cord-345211-4ivqlsgt	139	15	consistently	consistently	RB
cord-345211-4ivqlsgt	139	16	finding	find	VBG
cord-345211-4ivqlsgt	139	17	evidence	evidence	NN
cord-345211-4ivqlsgt	139	18	of	of	IN
cord-345211-4ivqlsgt	139	19	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	139	20	in	in	IN
cord-345211-4ivqlsgt	139	21	the	the	DT
cord-345211-4ivqlsgt	139	22	lower	low	JJR
cord-345211-4ivqlsgt	139	23	airways	airway	NNS
cord-345211-4ivqlsgt	139	24	[	[	-LRB-
cord-345211-4ivqlsgt	139	25	75	75	CD
cord-345211-4ivqlsgt	139	26	]	]	-RRB-
cord-345211-4ivqlsgt	139	27	.	.	.
cord-345211-4ivqlsgt	140	1	This	this	DT
cord-345211-4ivqlsgt	140	2	important	important	JJ
cord-345211-4ivqlsgt	140	3	realization	realization	NN
cord-345211-4ivqlsgt	140	4	has	have	VBZ
cord-345211-4ivqlsgt	140	5	challenged	challenge	VBN
cord-345211-4ivqlsgt	140	6	our	-PRON-	PRP$
cord-345211-4ivqlsgt	140	7	traditional	traditional	JJ
cord-345211-4ivqlsgt	140	8	paradigm	paradigm	NN
cord-345211-4ivqlsgt	140	9	of	of	IN
cord-345211-4ivqlsgt	140	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	140	11	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	140	12	.	.	.
cord-345211-4ivqlsgt	141	1	The	the	DT
cord-345211-4ivqlsgt	141	2	tradition	tradition	NN
cord-345211-4ivqlsgt	141	3	view	view	VBP
cord-345211-4ivqlsgt	141	4	that	that	IN
cord-345211-4ivqlsgt	141	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	141	6	is	be	VBZ
cord-345211-4ivqlsgt	141	7	caused	cause	VBN
cord-345211-4ivqlsgt	141	8	by	by	IN
cord-345211-4ivqlsgt	141	9	a	a	DT
cord-345211-4ivqlsgt	141	10	single	single	JJ
cord-345211-4ivqlsgt	141	11	invasive	invasive	JJ
cord-345211-4ivqlsgt	141	12	pathogen	pathogen	NN
cord-345211-4ivqlsgt	141	13	in	in	IN
cord-345211-4ivqlsgt	141	14	a	a	DT
cord-345211-4ivqlsgt	141	15	normally	normally	RB
cord-345211-4ivqlsgt	141	16	sterile	sterile	JJ
cord-345211-4ivqlsgt	141	17	site	site	NN
cord-345211-4ivqlsgt	141	18	is	be	VBZ
cord-345211-4ivqlsgt	141	19	likely	likely	RB
cord-345211-4ivqlsgt	141	20	wrong	wrong	JJ
cord-345211-4ivqlsgt	141	21	.	.	.
cord-345211-4ivqlsgt	142	1	Increasing	increase	VBG
cord-345211-4ivqlsgt	142	2	recognition	recognition	NN
cord-345211-4ivqlsgt	142	3	that	that	IN
cord-345211-4ivqlsgt	142	4	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	142	5	and	and	CC
cord-345211-4ivqlsgt	142	6	viruses	virus	NNS
cord-345211-4ivqlsgt	142	7	frequently	frequently	RB
cord-345211-4ivqlsgt	142	8	interact	interact	VBP
cord-345211-4ivqlsgt	142	9	in	in	IN
cord-345211-4ivqlsgt	142	10	the	the	DT
cord-345211-4ivqlsgt	142	11	causative	causative	JJ
cord-345211-4ivqlsgt	142	12	pathway	pathway	NN
cord-345211-4ivqlsgt	142	13	to	to	IN
cord-345211-4ivqlsgt	142	14	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	142	15	[	[	-LRB-
cord-345211-4ivqlsgt	142	16	76	76	CD
cord-345211-4ivqlsgt	142	17	,	,	,
cord-345211-4ivqlsgt	142	18	77	77	CD
cord-345211-4ivqlsgt	142	19	]	]	-RRB-
cord-345211-4ivqlsgt	142	20	adds	add	VBZ
cord-345211-4ivqlsgt	142	21	additional	additional	JJ
cord-345211-4ivqlsgt	142	22	complexity	complexity	NN
cord-345211-4ivqlsgt	142	23	,	,	,
cord-345211-4ivqlsgt	142	24	as	as	IN
cord-345211-4ivqlsgt	142	25	does	do	VBZ
cord-345211-4ivqlsgt	142	26	the	the	DT
cord-345211-4ivqlsgt	142	27	frequent	frequent	JJ
cord-345211-4ivqlsgt	142	28	finding	finding	NN
cord-345211-4ivqlsgt	142	29	of	of	IN
cord-345211-4ivqlsgt	142	30	polymicrobial	polymicrobial	JJ
cord-345211-4ivqlsgt	142	31	infections	infection	NNS
cord-345211-4ivqlsgt	142	32	[	[	-LRB-
cord-345211-4ivqlsgt	142	33	78	78	CD
cord-345211-4ivqlsgt	142	34	]	]	-RRB-
cord-345211-4ivqlsgt	142	35	.	.	.
cord-345211-4ivqlsgt	143	1	Under	under	IN
cord-345211-4ivqlsgt	143	2	the	the	DT
cord-345211-4ivqlsgt	143	3	new	new	JJ
cord-345211-4ivqlsgt	143	4	paradigm	paradigm	NN
cord-345211-4ivqlsgt	143	5	,	,	,
cord-345211-4ivqlsgt	143	6	dominant	dominant	JJ
cord-345211-4ivqlsgt	143	7	species	specie	NNS
cord-345211-4ivqlsgt	143	8	emerge	emerge	VBP
cord-345211-4ivqlsgt	143	9	from	from	IN
cord-345211-4ivqlsgt	143	10	the	the	DT
cord-345211-4ivqlsgt	143	11	lung	lung	NN
cord-345211-4ivqlsgt	143	12	ecosystem	ecosystem	NN
cord-345211-4ivqlsgt	143	13	in	in	IN
cord-345211-4ivqlsgt	143	14	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	143	15	through	through	IN
cord-345211-4ivqlsgt	143	16	uncertain	uncertain	JJ
cord-345211-4ivqlsgt	143	17	mechanisms	mechanism	NNS
cord-345211-4ivqlsgt	143	18	,	,	,
cord-345211-4ivqlsgt	143	19	and	and	CC
cord-345211-4ivqlsgt	143	20	the	the	DT
cord-345211-4ivqlsgt	143	21	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	143	22	versus	versus	IN
cord-345211-4ivqlsgt	143	23	viral	viral	JJ
cord-345211-4ivqlsgt	143	24	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	143	25	concept	concept	NN
cord-345211-4ivqlsgt	143	26	is	be	VBZ
cord-345211-4ivqlsgt	143	27	too	too	RB
cord-345211-4ivqlsgt	143	28	simplistic	simplistic	JJ
cord-345211-4ivqlsgt	143	29	.	.	.
cord-345211-4ivqlsgt	144	1	Consequently	consequently	RB
cord-345211-4ivqlsgt	144	2	,	,	,
cord-345211-4ivqlsgt	144	3	we	-PRON-	PRP
cord-345211-4ivqlsgt	144	4	probably	probably	RB
cord-345211-4ivqlsgt	144	5	need	need	VBP
cord-345211-4ivqlsgt	144	6	to	to	TO
cord-345211-4ivqlsgt	144	7	use	use	VB
cord-345211-4ivqlsgt	144	8	more	more	RBR
cord-345211-4ivqlsgt	144	9	sophisticated	sophisticated	JJ
cord-345211-4ivqlsgt	144	10	approaches	approach	NNS
cord-345211-4ivqlsgt	144	11	to	to	IN
cord-345211-4ivqlsgt	144	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	144	13	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	144	14	than	than	IN
cord-345211-4ivqlsgt	144	15	assays	assay	NNS
cord-345211-4ivqlsgt	144	16	that	that	WDT
cord-345211-4ivqlsgt	144	17	simply	simply	RB
cord-345211-4ivqlsgt	144	18	target	target	VBP
cord-345211-4ivqlsgt	144	19	single	single	JJ
cord-345211-4ivqlsgt	144	20	specific	specific	JJ
cord-345211-4ivqlsgt	144	21	putative	putative	JJ
cord-345211-4ivqlsgt	144	22	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	144	23	.	.	.
cord-345211-4ivqlsgt	145	1	We	-PRON-	PRP
cord-345211-4ivqlsgt	145	2	have	have	VBP
cord-345211-4ivqlsgt	145	3	a	a	DT
cord-345211-4ivqlsgt	145	4	lot	lot	NN
cord-345211-4ivqlsgt	145	5	to	to	TO
cord-345211-4ivqlsgt	145	6	learn	learn	VB
cord-345211-4ivqlsgt	145	7	and	and	CC
cord-345211-4ivqlsgt	145	8	are	be	VBP
cord-345211-4ivqlsgt	145	9	only	only	RB
cord-345211-4ivqlsgt	145	10	just	just	RB
cord-345211-4ivqlsgt	145	11	beginning	begin	VBG
cord-345211-4ivqlsgt	145	12	to	to	TO
cord-345211-4ivqlsgt	145	13	understand	understand	VB
cord-345211-4ivqlsgt	145	14	changes	change	NNS
cord-345211-4ivqlsgt	145	15	in	in	IN
cord-345211-4ivqlsgt	145	16	the	the	DT
cord-345211-4ivqlsgt	145	17	microbiome	microbiome	NN
cord-345211-4ivqlsgt	145	18	during	during	IN
cord-345211-4ivqlsgt	145	19	acute	acute	JJ
cord-345211-4ivqlsgt	145	20	infections	infection	NNS
cord-345211-4ivqlsgt	145	21	[	[	-LRB-
cord-345211-4ivqlsgt	145	22	75	75	CD
cord-345211-4ivqlsgt	145	23	,	,	,
cord-345211-4ivqlsgt	145	24	79	79	CD
cord-345211-4ivqlsgt	145	25	,	,	,
cord-345211-4ivqlsgt	145	26	80	80	CD
cord-345211-4ivqlsgt	145	27	]	]	-RRB-
cord-345211-4ivqlsgt	145	28	.	.	.
cord-345211-4ivqlsgt	146	1	Analysis	analysis	NN
cord-345211-4ivqlsgt	146	2	of	of	IN
cord-345211-4ivqlsgt	146	3	the	the	DT
cord-345211-4ivqlsgt	146	4	lung	lung	NN
cord-345211-4ivqlsgt	146	5	microbiome	microbiome	NN
cord-345211-4ivqlsgt	146	6	may	may	MD
cord-345211-4ivqlsgt	146	7	provide	provide	VB
cord-345211-4ivqlsgt	146	8	insights	insight	NNS
cord-345211-4ivqlsgt	146	9	into	into	IN
cord-345211-4ivqlsgt	146	10	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	146	11	etiology	etiology	NN
cord-345211-4ivqlsgt	146	12	and	and	CC
cord-345211-4ivqlsgt	146	13	reveal	reveal	VB
cord-345211-4ivqlsgt	146	14	novel	novel	JJ
cord-345211-4ivqlsgt	146	15	markers	marker	NNS
cord-345211-4ivqlsgt	146	16	for	for	IN
cord-345211-4ivqlsgt	146	17	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	146	18	prognosis	prognosis	NN
cord-345211-4ivqlsgt	146	19	and	and	CC
cord-345211-4ivqlsgt	146	20	for	for	IN
cord-345211-4ivqlsgt	146	21	treatment	treatment	NN
cord-345211-4ivqlsgt	146	22	guidance	guidance	NN
cord-345211-4ivqlsgt	146	23	[	[	-LRB-
cord-345211-4ivqlsgt	146	24	81	81	CD
cord-345211-4ivqlsgt	146	25	]	]	-RRB-
cord-345211-4ivqlsgt	146	26	.	.	.
cord-345211-4ivqlsgt	147	1	Molecular	molecular	JJ
cord-345211-4ivqlsgt	147	2	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	147	3	techniques	technique	NNS
cord-345211-4ivqlsgt	147	4	clearly	clearly	RB
cord-345211-4ivqlsgt	147	5	have	have	VBP
cord-345211-4ivqlsgt	147	6	a	a	DT
cord-345211-4ivqlsgt	147	7	central	central	JJ
cord-345211-4ivqlsgt	147	8	role	role	NN
cord-345211-4ivqlsgt	147	9	in	in	IN
cord-345211-4ivqlsgt	147	10	these	these	DT
cord-345211-4ivqlsgt	147	11	metagenomic	metagenomic	NN
cord-345211-4ivqlsgt	147	12	analyses	analysis	NNS
cord-345211-4ivqlsgt	147	13	[	[	-LRB-
cord-345211-4ivqlsgt	147	14	82	82	CD
cord-345211-4ivqlsgt	147	15	,	,	,
cord-345211-4ivqlsgt	147	16	83	83	CD
cord-345211-4ivqlsgt	147	17	]	]	-RRB-
cord-345211-4ivqlsgt	147	18	,	,	,
cord-345211-4ivqlsgt	147	19	providing	provide	VBG
cord-345211-4ivqlsgt	147	20	another	another	DT
cord-345211-4ivqlsgt	147	21	opportunity	opportunity	NN
cord-345211-4ivqlsgt	147	22	for	for	IN
cord-345211-4ivqlsgt	147	23	next	next	JJ
cord-345211-4ivqlsgt	147	24	generation	generation	NN
cord-345211-4ivqlsgt	147	25	sequencing	sequencing	NN
cord-345211-4ivqlsgt	147	26	technology	technology	NN
cord-345211-4ivqlsgt	147	27	.	.	.
cord-345211-4ivqlsgt	148	1	Any	any	DT
cord-345211-4ivqlsgt	148	2	future	future	JJ
cord-345211-4ivqlsgt	148	3	developments	development	NNS
cord-345211-4ivqlsgt	148	4	in	in	IN
cord-345211-4ivqlsgt	148	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	148	6	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	148	7	must	must	MD
cord-345211-4ivqlsgt	148	8	be	be	VB
cord-345211-4ivqlsgt	148	9	cognizant	cognizant	JJ
cord-345211-4ivqlsgt	148	10	of	of	IN
cord-345211-4ivqlsgt	148	11	new	new	JJ
cord-345211-4ivqlsgt	148	12	knowledge	knowledge	NN
cord-345211-4ivqlsgt	148	13	about	about	IN
cord-345211-4ivqlsgt	148	14	the	the	DT
cord-345211-4ivqlsgt	148	15	lung	lung	NN
cord-345211-4ivqlsgt	148	16	microbiome	microbiome	NN
cord-345211-4ivqlsgt	148	17	and	and	CC
cord-345211-4ivqlsgt	148	18	about	about	IN
cord-345211-4ivqlsgt	148	19	changes	change	NNS
cord-345211-4ivqlsgt	148	20	in	in	IN
cord-345211-4ivqlsgt	148	21	the	the	DT
cord-345211-4ivqlsgt	148	22	lungs	lung	NNS
cord-345211-4ivqlsgt	148	23	during	during	IN
cord-345211-4ivqlsgt	148	24	the	the	DT
cord-345211-4ivqlsgt	148	25	pathway	pathway	NN
cord-345211-4ivqlsgt	148	26	to	to	IN
cord-345211-4ivqlsgt	148	27	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	148	28	.	.	.
cord-345211-4ivqlsgt	149	1	There	there	EX
cord-345211-4ivqlsgt	149	2	is	be	VBZ
cord-345211-4ivqlsgt	149	3	likely	likely	JJ
cord-345211-4ivqlsgt	149	4	to	to	TO
cord-345211-4ivqlsgt	149	5	be	be	VB
cord-345211-4ivqlsgt	149	6	less	less	JJR
cord-345211-4ivqlsgt	149	7	focus	focus	NN
cord-345211-4ivqlsgt	149	8	on	on	IN
cord-345211-4ivqlsgt	149	9	just	just	RB
cord-345211-4ivqlsgt	149	10	the	the	DT
cord-345211-4ivqlsgt	149	11	detection	detection	NN
cord-345211-4ivqlsgt	149	12	of	of	IN
cord-345211-4ivqlsgt	149	13	specific	specific	JJ
cord-345211-4ivqlsgt	149	14	known	know	VBN
cord-345211-4ivqlsgt	149	15	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	149	16	,	,	,
cord-345211-4ivqlsgt	149	17	with	with	IN
cord-345211-4ivqlsgt	149	18	more	more	JJR
cord-345211-4ivqlsgt	149	19	interest	interest	NN
cord-345211-4ivqlsgt	149	20	in	in	IN
cord-345211-4ivqlsgt	149	21	the	the	DT
cord-345211-4ivqlsgt	149	22	search	search	NN
cord-345211-4ivqlsgt	149	23	for	for	IN
cord-345211-4ivqlsgt	149	24	markers	marker	NNS
cord-345211-4ivqlsgt	149	25	of	of	IN
cord-345211-4ivqlsgt	149	26	change	change	NN
cord-345211-4ivqlsgt	149	27	in	in	IN
cord-345211-4ivqlsgt	149	28	the	the	DT
cord-345211-4ivqlsgt	149	29	lung	lung	NN
cord-345211-4ivqlsgt	149	30	microbial	microbial	NN
cord-345211-4ivqlsgt	149	31	ecology	ecology	NN
cord-345211-4ivqlsgt	149	32	in	in	IN
cord-345211-4ivqlsgt	149	33	the	the	DT
cord-345211-4ivqlsgt	149	34	diseased	diseased	JJ
cord-345211-4ivqlsgt	149	35	state	state	NN
cord-345211-4ivqlsgt	149	36	.	.	.
cord-345211-4ivqlsgt	150	1	The	the	DT
cord-345211-4ivqlsgt	150	2	potential	potential	JJ
cord-345211-4ivqlsgt	150	3	application	application	NN
cord-345211-4ivqlsgt	150	4	of	of	IN
cord-345211-4ivqlsgt	150	5	metagenomics	metagenomic	NNS
cord-345211-4ivqlsgt	150	6	in	in	IN
cord-345211-4ivqlsgt	150	7	the	the	DT
cord-345211-4ivqlsgt	150	8	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	150	9	laboratory	laboratory	NN
cord-345211-4ivqlsgt	150	10	is	be	VBZ
cord-345211-4ivqlsgt	150	11	still	still	RB
cord-345211-4ivqlsgt	150	12	uncertain	uncertain	JJ
cord-345211-4ivqlsgt	150	13	and	and	CC
cord-345211-4ivqlsgt	150	14	will	will	MD
cord-345211-4ivqlsgt	150	15	dependent	dependent	JJ
cord-345211-4ivqlsgt	150	16	on	on	IN
cord-345211-4ivqlsgt	150	17	the	the	DT
cord-345211-4ivqlsgt	150	18	emergence	emergence	NN
cord-345211-4ivqlsgt	150	19	of	of	IN
cord-345211-4ivqlsgt	150	20	improved	improved	JJ
cord-345211-4ivqlsgt	150	21	sequencing	sequencing	NN
cord-345211-4ivqlsgt	150	22	technology	technology	NN
cord-345211-4ivqlsgt	150	23	and	and	CC
cord-345211-4ivqlsgt	150	24	bioinformatics	bioinformatics	NN
cord-345211-4ivqlsgt	150	25	software	software	NN
cord-345211-4ivqlsgt	150	26	.	.	.
cord-345211-4ivqlsgt	151	1	Whole	whole	JJ
cord-345211-4ivqlsgt	151	2	genome	genome	NN
cord-345211-4ivqlsgt	151	3	sequencing	sequencing	NN
cord-345211-4ivqlsgt	151	4	of	of	IN
cord-345211-4ivqlsgt	151	5	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	151	6	isolates	isolate	NNS
cord-345211-4ivqlsgt	151	7	is	be	VBZ
cord-345211-4ivqlsgt	151	8	already	already	RB
cord-345211-4ivqlsgt	151	9	being	be	VBG
cord-345211-4ivqlsgt	151	10	increasingly	increasingly	RB
cord-345211-4ivqlsgt	151	11	used	use	VBN
cord-345211-4ivqlsgt	151	12	for	for	IN
cord-345211-4ivqlsgt	151	13	strain	strain	NN
cord-345211-4ivqlsgt	151	14	characterization	characterization	NN
cord-345211-4ivqlsgt	151	15	and	and	CC
cord-345211-4ivqlsgt	151	16	epidemiological	epidemiological	JJ
cord-345211-4ivqlsgt	151	17	analyses	analysis	NNS
cord-345211-4ivqlsgt	151	18	[	[	-LRB-
cord-345211-4ivqlsgt	151	19	84	84	CD
cord-345211-4ivqlsgt	151	20	]	]	-RRB-
cord-345211-4ivqlsgt	151	21	.	.	.
cord-345211-4ivqlsgt	152	1	For	for	IN
cord-345211-4ivqlsgt	152	2	detection	detection	NN
cord-345211-4ivqlsgt	152	3	of	of	IN
cord-345211-4ivqlsgt	152	4	specific	specific	JJ
cord-345211-4ivqlsgt	152	5	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	152	6	,	,	,
cord-345211-4ivqlsgt	152	7	existing	exist	VBG
cord-345211-4ivqlsgt	152	8	molecular	molecular	JJ
cord-345211-4ivqlsgt	152	9	tests	test	NNS
cord-345211-4ivqlsgt	152	10	can	can	MD
cord-345211-4ivqlsgt	152	11	detect	detect	VB
cord-345211-4ivqlsgt	152	12	very	very	RB
cord-345211-4ivqlsgt	152	13	low	low	JJ
cord-345211-4ivqlsgt	152	14	microbial	microbial	JJ
cord-345211-4ivqlsgt	152	15	loads	load	NNS
cord-345211-4ivqlsgt	152	16	with	with	IN
cord-345211-4ivqlsgt	152	17	high	high	JJ
cord-345211-4ivqlsgt	152	18	analytical	analytical	JJ
cord-345211-4ivqlsgt	152	19	specificity	specificity	NN
cord-345211-4ivqlsgt	152	20	.	.	.
cord-345211-4ivqlsgt	153	1	It	-PRON-	PRP
cord-345211-4ivqlsgt	153	2	is	be	VBZ
cord-345211-4ivqlsgt	153	3	unlikely	unlikely	JJ
cord-345211-4ivqlsgt	153	4	that	that	IN
cord-345211-4ivqlsgt	153	5	further	further	JJ
cord-345211-4ivqlsgt	153	6	test	test	NN
cord-345211-4ivqlsgt	153	7	developments	development	NNS
cord-345211-4ivqlsgt	153	8	will	will	MD
cord-345211-4ivqlsgt	153	9	lead	lead	VB
cord-345211-4ivqlsgt	153	10	to	to	IN
cord-345211-4ivqlsgt	153	11	significantly	significantly	RB
cord-345211-4ivqlsgt	153	12	improved	improve	VBN
cord-345211-4ivqlsgt	153	13	performance	performance	NN
cord-345211-4ivqlsgt	153	14	than	than	IN
cord-345211-4ivqlsgt	153	15	we	-PRON-	PRP
cord-345211-4ivqlsgt	153	16	have	have	VBP
cord-345211-4ivqlsgt	153	17	now	now	RB
cord-345211-4ivqlsgt	153	18	.	.	.
cord-345211-4ivqlsgt	154	1	Indeed	indeed	RB
cord-345211-4ivqlsgt	154	2	,	,	,
cord-345211-4ivqlsgt	154	3	the	the	DT
cord-345211-4ivqlsgt	154	4	interpretation	interpretation	NN
cord-345211-4ivqlsgt	154	5	of	of	IN
cord-345211-4ivqlsgt	154	6	low	low	JJ
cord-345211-4ivqlsgt	154	7	-	-	HYPH
cord-345211-4ivqlsgt	154	8	level	level	NN
cord-345211-4ivqlsgt	154	9	positive	positive	JJ
cord-345211-4ivqlsgt	154	10	results	result	NNS
cord-345211-4ivqlsgt	154	11	from	from	IN
cord-345211-4ivqlsgt	154	12	NATs	NATs	NNP
cord-345211-4ivqlsgt	154	13	already	already	RB
cord-345211-4ivqlsgt	154	14	provides	provide	VBZ
cord-345211-4ivqlsgt	154	15	a	a	DT
cord-345211-4ivqlsgt	154	16	dilemma	dilemma	NN
cord-345211-4ivqlsgt	154	17	for	for	IN
cord-345211-4ivqlsgt	154	18	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	154	19	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	154	20	.	.	.
cord-345211-4ivqlsgt	155	1	Instead	instead	RB
cord-345211-4ivqlsgt	155	2	,	,	,
cord-345211-4ivqlsgt	155	3	the	the	DT
cord-345211-4ivqlsgt	155	4	focus	focus	NN
cord-345211-4ivqlsgt	155	5	of	of	IN
cord-345211-4ivqlsgt	155	6	developers	developer	NNS
cord-345211-4ivqlsgt	155	7	should	should	MD
cord-345211-4ivqlsgt	155	8	be	be	VB
cord-345211-4ivqlsgt	155	9	on	on	IN
cord-345211-4ivqlsgt	155	10	making	make	VBG
cord-345211-4ivqlsgt	155	11	test	test	NN
cord-345211-4ivqlsgt	155	12	platforms	platform	NNS
cord-345211-4ivqlsgt	155	13	that	that	WDT
cord-345211-4ivqlsgt	155	14	are	be	VBP
cord-345211-4ivqlsgt	155	15	more	more	JJR
cord-345211-4ivqlsgt	155	16	user	user	NN
cord-345211-4ivqlsgt	155	17	-	-	HYPH
cord-345211-4ivqlsgt	155	18	friendly	friendly	JJ
cord-345211-4ivqlsgt	155	19	and	and	CC
cord-345211-4ivqlsgt	155	20	that	that	WDT
cord-345211-4ivqlsgt	155	21	allow	allow	VBP
cord-345211-4ivqlsgt	155	22	shorter	short	JJR
cord-345211-4ivqlsgt	155	23	turnaround	turnaround	NN
cord-345211-4ivqlsgt	155	24	times	time	NNS
cord-345211-4ivqlsgt	155	25	.	.	.
cord-345211-4ivqlsgt	156	1	We	-PRON-	PRP
cord-345211-4ivqlsgt	156	2	also	also	RB
cord-345211-4ivqlsgt	156	3	need	need	VBP
cord-345211-4ivqlsgt	156	4	to	to	TO
cord-345211-4ivqlsgt	156	5	place	place	VB
cord-345211-4ivqlsgt	156	6	greater	great	JJR
cord-345211-4ivqlsgt	156	7	attention	attention	NN
cord-345211-4ivqlsgt	156	8	on	on	IN
cord-345211-4ivqlsgt	156	9	the	the	DT
cord-345211-4ivqlsgt	156	10	meaningful	meaningful	JJ
cord-345211-4ivqlsgt	156	11	interpretation	interpretation	NN
cord-345211-4ivqlsgt	156	12	of	of	IN
cord-345211-4ivqlsgt	156	13	positive	positive	JJ
cord-345211-4ivqlsgt	156	14	results	result	NNS
cord-345211-4ivqlsgt	156	15	in	in	IN
cord-345211-4ivqlsgt	156	16	order	order	NN
cord-345211-4ivqlsgt	156	17	to	to	TO
cord-345211-4ivqlsgt	156	18	determine	determine	VB
cord-345211-4ivqlsgt	156	19	which	which	WDT
cord-345211-4ivqlsgt	156	20	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	156	21	are	be	VBP
cord-345211-4ivqlsgt	156	22	actually	actually	RB
cord-345211-4ivqlsgt	156	23	causing	cause	VBG
cord-345211-4ivqlsgt	156	24	individual	individual	JJ
cord-345211-4ivqlsgt	156	25	episodes	episode	NNS
cord-345211-4ivqlsgt	156	26	of	of	IN
cord-345211-4ivqlsgt	156	27	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	156	28	.	.	.
cord-345211-4ivqlsgt	157	1	One	one	CD
cord-345211-4ivqlsgt	157	2	approach	approach	NN
cord-345211-4ivqlsgt	157	3	to	to	TO
cord-345211-4ivqlsgt	157	4	help	help	VB
cord-345211-4ivqlsgt	157	5	distinguish	distinguish	VB
cord-345211-4ivqlsgt	157	6	infection	infection	NN
cord-345211-4ivqlsgt	157	7	from	from	IN
cord-345211-4ivqlsgt	157	8	contamination	contamination	NN
cord-345211-4ivqlsgt	157	9	or	or	CC
cord-345211-4ivqlsgt	157	10	colonization	colonization	NN
cord-345211-4ivqlsgt	157	11	is	be	VBZ
cord-345211-4ivqlsgt	157	12	to	to	TO
cord-345211-4ivqlsgt	157	13	quantify	quantify	VB
cord-345211-4ivqlsgt	157	14	microbial	microbial	JJ
cord-345211-4ivqlsgt	157	15	load	load	NN
cord-345211-4ivqlsgt	157	16	by	by	IN
cord-345211-4ivqlsgt	157	17	molecular	molecular	JJ
cord-345211-4ivqlsgt	157	18	methods	method	NNS
cord-345211-4ivqlsgt	157	19	.	.	.
cord-345211-4ivqlsgt	158	1	The	the	DT
cord-345211-4ivqlsgt	158	2	situation	situation	NN
cord-345211-4ivqlsgt	158	3	is	be	VBZ
cord-345211-4ivqlsgt	158	4	analogous	analogous	JJ
cord-345211-4ivqlsgt	158	5	to	to	IN
cord-345211-4ivqlsgt	158	6	culturebased	culturebased	JJ
cord-345211-4ivqlsgt	158	7	methods	method	NNS
cord-345211-4ivqlsgt	158	8	,	,	,
cord-345211-4ivqlsgt	158	9	whereby	whereby	WRB
cord-345211-4ivqlsgt	158	10	organisms	organism	NNS
cord-345211-4ivqlsgt	158	11	isolated	isolate	VBN
cord-345211-4ivqlsgt	158	12	in	in	IN
cord-345211-4ivqlsgt	158	13	greater	great	JJR
cord-345211-4ivqlsgt	158	14	quantities	quantity	NNS
cord-345211-4ivqlsgt	158	15	from	from	IN
cord-345211-4ivqlsgt	158	16	certain	certain	JJ
cord-345211-4ivqlsgt	158	17	cultures	culture	NNS
cord-345211-4ivqlsgt	158	18	are	be	VBP
cord-345211-4ivqlsgt	158	19	regarded	regard	VBN
cord-345211-4ivqlsgt	158	20	as	as	IN
cord-345211-4ivqlsgt	158	21	more	more	RBR
cord-345211-4ivqlsgt	158	22	likely	likely	JJ
cord-345211-4ivqlsgt	158	23	to	to	TO
cord-345211-4ivqlsgt	158	24	be	be	VB
cord-345211-4ivqlsgt	158	25	clinically	clinically	RB
cord-345211-4ivqlsgt	158	26	significant	significant	JJ
cord-345211-4ivqlsgt	158	27	.	.	.
cord-345211-4ivqlsgt	159	1	This	this	DT
cord-345211-4ivqlsgt	159	2	approach	approach	NN
cord-345211-4ivqlsgt	159	3	depends	depend	VBZ
cord-345211-4ivqlsgt	159	4	on	on	IN
cord-345211-4ivqlsgt	159	5	the	the	DT
cord-345211-4ivqlsgt	159	6	determination	determination	NN
cord-345211-4ivqlsgt	159	7	of	of	IN
cord-345211-4ivqlsgt	159	8	cut	cut	VB
cord-345211-4ivqlsgt	159	9	-	-	HYPH
cord-345211-4ivqlsgt	159	10	off	off	RP
cord-345211-4ivqlsgt	159	11	microbial	microbial	JJ
cord-345211-4ivqlsgt	159	12	load	load	NN
cord-345211-4ivqlsgt	159	13	levels	level	NNS
cord-345211-4ivqlsgt	159	14	that	that	WDT
cord-345211-4ivqlsgt	159	15	will	will	MD
cord-345211-4ivqlsgt	159	16	provide	provide	VB
cord-345211-4ivqlsgt	159	17	sufficient	sufficient	JJ
cord-345211-4ivqlsgt	159	18	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	159	19	accuracy	accuracy	NN
cord-345211-4ivqlsgt	159	20	to	to	TO
cord-345211-4ivqlsgt	159	21	distinguish	distinguish	VB
cord-345211-4ivqlsgt	159	22	infection	infection	NN
cord-345211-4ivqlsgt	159	23	from	from	IN
cord-345211-4ivqlsgt	159	24	colonization/	colonization/	CD
cord-345211-4ivqlsgt	159	25	contamination	contamination	NN
cord-345211-4ivqlsgt	159	26	.	.	.
cord-345211-4ivqlsgt	160	1	However	however	RB
cord-345211-4ivqlsgt	160	2	,	,	,
cord-345211-4ivqlsgt	160	3	given	give	VBN
cord-345211-4ivqlsgt	160	4	the	the	DT
cord-345211-4ivqlsgt	160	5	lack	lack	NN
cord-345211-4ivqlsgt	160	6	of	of	IN
cord-345211-4ivqlsgt	160	7	suitable	suitable	JJ
cord-345211-4ivqlsgt	160	8	comparator	comparator	NN
cord-345211-4ivqlsgt	160	9	'	'	``
cord-345211-4ivqlsgt	160	10	gold	gold	NN
cord-345211-4ivqlsgt	160	11	'	'	''
cord-345211-4ivqlsgt	160	12	standards	standard	NNS
cord-345211-4ivqlsgt	160	13	,	,	,
cord-345211-4ivqlsgt	160	14	these	these	DT
cord-345211-4ivqlsgt	160	15	cut	cut	VB
cord-345211-4ivqlsgt	160	16	-	-	HYPH
cord-345211-4ivqlsgt	160	17	off	off	RP
cord-345211-4ivqlsgt	160	18	values	value	NNS
cord-345211-4ivqlsgt	160	19	are	be	VBP
cord-345211-4ivqlsgt	160	20	very	very	RB
cord-345211-4ivqlsgt	160	21	difficult	difficult	JJ
cord-345211-4ivqlsgt	160	22	to	to	TO
cord-345211-4ivqlsgt	160	23	identify	identify	VB
cord-345211-4ivqlsgt	160	24	in	in	IN
cord-345211-4ivqlsgt	160	25	a	a	DT
cord-345211-4ivqlsgt	160	26	scientific	scientific	JJ
cord-345211-4ivqlsgt	160	27	manner	manner	NN
cord-345211-4ivqlsgt	160	28	.	.	.
cord-345211-4ivqlsgt	161	1	They	-PRON-	PRP
cord-345211-4ivqlsgt	161	2	may	may	MD
cord-345211-4ivqlsgt	161	3	also	also	RB
cord-345211-4ivqlsgt	161	4	vary	vary	VB
cord-345211-4ivqlsgt	161	5	for	for	IN
cord-345211-4ivqlsgt	161	6	different	different	JJ
cord-345211-4ivqlsgt	161	7	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	161	8	.	.	.
cord-345211-4ivqlsgt	162	1	Quantitative	quantitative	JJ
cord-345211-4ivqlsgt	162	2	multiplex	multiplex	NN
cord-345211-4ivqlsgt	162	3	PCR	PCR	NNP
cord-345211-4ivqlsgt	162	4	has	have	VBZ
cord-345211-4ivqlsgt	162	5	been	be	VBN
cord-345211-4ivqlsgt	162	6	used	use	VBN
cord-345211-4ivqlsgt	162	7	to	to	TO
cord-345211-4ivqlsgt	162	8	determine	determine	VB
cord-345211-4ivqlsgt	162	9	the	the	DT
cord-345211-4ivqlsgt	162	10	etiology	etiology	NN
cord-345211-4ivqlsgt	162	11	of	of	IN
cord-345211-4ivqlsgt	162	12	community	community	NN
cord-345211-4ivqlsgt	162	13	-	-	HYPH
cord-345211-4ivqlsgt	162	14	acquired	acquire	VBN
cord-345211-4ivqlsgt	162	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	162	16	in	in	IN
cord-345211-4ivqlsgt	162	17	adults	adult	NNS
cord-345211-4ivqlsgt	162	18	using	use	VBG
cord-345211-4ivqlsgt	162	19	cutoffs	cutoff	NNS
cord-345211-4ivqlsgt	162	20	developed	develop	VBN
cord-345211-4ivqlsgt	162	21	for	for	IN
cord-345211-4ivqlsgt	162	22	interpretation	interpretation	NN
cord-345211-4ivqlsgt	162	23	of	of	IN
cord-345211-4ivqlsgt	162	24	culture	culture	NN
cord-345211-4ivqlsgt	162	25	results	result	NNS
cord-345211-4ivqlsgt	162	26	from	from	IN
cord-345211-4ivqlsgt	162	27	lower	low	JJR
cord-345211-4ivqlsgt	162	28	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	162	29	tract	tract	NN
cord-345211-4ivqlsgt	162	30	specimens	specimen	NNS
cord-345211-4ivqlsgt	162	31	[	[	-LRB-
cord-345211-4ivqlsgt	162	32	85	85	CD
cord-345211-4ivqlsgt	162	33	,	,	,
cord-345211-4ivqlsgt	162	34	86	86	CD
cord-345211-4ivqlsgt	162	35	]	]	-RRB-
cord-345211-4ivqlsgt	162	36	.	.	.
cord-345211-4ivqlsgt	163	1	Not	not	RB
cord-345211-4ivqlsgt	163	2	surprisingly	surprisingly	RB
cord-345211-4ivqlsgt	163	3	,	,	,
cord-345211-4ivqlsgt	163	4	the	the	DT
cord-345211-4ivqlsgt	163	5	addition	addition	NN
cord-345211-4ivqlsgt	163	6	of	of	IN
cord-345211-4ivqlsgt	163	7	PCR	PCR	NNP
cord-345211-4ivqlsgt	163	8	targets	target	NNS
cord-345211-4ivqlsgt	163	9	for	for	IN
cord-345211-4ivqlsgt	163	10	common	common	JJ
cord-345211-4ivqlsgt	163	11	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	163	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	163	13	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	163	14	,	,	,
cord-345211-4ivqlsgt	163	15	such	such	JJ
cord-345211-4ivqlsgt	163	16	as	as	IN
cord-345211-4ivqlsgt	163	17	S.	S.	NNP
cord-345211-4ivqlsgt	163	18	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	163	19	,	,	,
cord-345211-4ivqlsgt	163	20	resulted	result	VBD
cord-345211-4ivqlsgt	163	21	in	in	IN
cord-345211-4ivqlsgt	163	22	an	an	DT
cord-345211-4ivqlsgt	163	23	etiological	etiological	JJ
cord-345211-4ivqlsgt	163	24	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	163	25	being	be	VBG
cord-345211-4ivqlsgt	163	26	made	make	VBN
cord-345211-4ivqlsgt	163	27	in	in	IN
cord-345211-4ivqlsgt	163	28	a	a	DT
cord-345211-4ivqlsgt	163	29	high	high	JJ
cord-345211-4ivqlsgt	163	30	proportion	proportion	NN
cord-345211-4ivqlsgt	163	31	of	of	IN
cord-345211-4ivqlsgt	163	32	cases	case	NNS
cord-345211-4ivqlsgt	163	33	.	.	.
cord-345211-4ivqlsgt	164	1	However	however	RB
cord-345211-4ivqlsgt	164	2	,	,	,
cord-345211-4ivqlsgt	164	3	these	these	DT
cord-345211-4ivqlsgt	164	4	cutoffs	cutoff	NNS
cord-345211-4ivqlsgt	164	5	have	have	VBP
cord-345211-4ivqlsgt	164	6	been	be	VBN
cord-345211-4ivqlsgt	164	7	determined	determine	VBN
cord-345211-4ivqlsgt	164	8	by	by	IN
cord-345211-4ivqlsgt	164	9	expert	expert	JJ
cord-345211-4ivqlsgt	164	10	opinion	opinion	NN
cord-345211-4ivqlsgt	164	11	and	and	CC
cord-345211-4ivqlsgt	164	12	,	,	,
cord-345211-4ivqlsgt	164	13	although	although	IN
cord-345211-4ivqlsgt	164	14	generally	generally	RB
cord-345211-4ivqlsgt	164	15	intuitive	intuitive	JJ
cord-345211-4ivqlsgt	164	16	,	,	,
cord-345211-4ivqlsgt	164	17	might	may	MD
cord-345211-4ivqlsgt	164	18	be	be	VB
cord-345211-4ivqlsgt	164	19	quite	quite	RB
cord-345211-4ivqlsgt	164	20	misleading	misleading	JJ
cord-345211-4ivqlsgt	164	21	.	.	.
cord-345211-4ivqlsgt	165	1	Despite	despite	IN
cord-345211-4ivqlsgt	165	2	the	the	DT
cord-345211-4ivqlsgt	165	3	challenges	challenge	NNS
cord-345211-4ivqlsgt	165	4	in	in	IN
cord-345211-4ivqlsgt	165	5	doing	do	VBG
cord-345211-4ivqlsgt	165	6	so	so	RB
cord-345211-4ivqlsgt	165	7	,	,	,
cord-345211-4ivqlsgt	165	8	we	-PRON-	PRP
cord-345211-4ivqlsgt	165	9	need	need	VBP
cord-345211-4ivqlsgt	165	10	more	more	RBR
cord-345211-4ivqlsgt	165	11	objective	objective	JJ
cord-345211-4ivqlsgt	165	12	assessment	assessment	NN
cord-345211-4ivqlsgt	165	13	of	of	IN
cord-345211-4ivqlsgt	165	14	cut	cut	VB
cord-345211-4ivqlsgt	165	15	-	-	HYPH
cord-345211-4ivqlsgt	165	16	off	off	RP
cord-345211-4ivqlsgt	165	17	values	value	NNS
cord-345211-4ivqlsgt	165	18	using	use	VBG
cord-345211-4ivqlsgt	165	19	good	good	JJ
cord-345211-4ivqlsgt	165	20	scientific	scientific	JJ
cord-345211-4ivqlsgt	165	21	and	and	CC
cord-345211-4ivqlsgt	165	22	epidemiologic	epidemiologic	JJ
cord-345211-4ivqlsgt	165	23	principles	principle	NNS
cord-345211-4ivqlsgt	165	24	.	.	.
cord-345211-4ivqlsgt	166	1	Quantitative	quantitative	JJ
cord-345211-4ivqlsgt	166	2	approaches	approach	NNS
cord-345211-4ivqlsgt	166	3	have	have	VBP
cord-345211-4ivqlsgt	166	4	also	also	RB
cord-345211-4ivqlsgt	166	5	been	be	VBN
cord-345211-4ivqlsgt	166	6	applied	apply	VBN
cord-345211-4ivqlsgt	166	7	to	to	IN
cord-345211-4ivqlsgt	166	8	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	166	9	specimens	specimen	NNS
cord-345211-4ivqlsgt	166	10	.	.	.
cord-345211-4ivqlsgt	167	1	Among	among	IN
cord-345211-4ivqlsgt	167	2	HIV	HIV	NNP
cord-345211-4ivqlsgt	167	3	-	-	HYPH
cord-345211-4ivqlsgt	167	4	infected	infect	VBN
cord-345211-4ivqlsgt	167	5	adults	adult	NNS
cord-345211-4ivqlsgt	167	6	in	in	IN
cord-345211-4ivqlsgt	167	7	South	South	NNP
cord-345211-4ivqlsgt	167	8	Africa	Africa	NNP
cord-345211-4ivqlsgt	167	9	,	,	,
cord-345211-4ivqlsgt	167	10	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	167	11	PCR	PCR	NNP
cord-345211-4ivqlsgt	167	12	testing	testing	NN
cord-345211-4ivqlsgt	167	13	of	of	IN
cord-345211-4ivqlsgt	167	14	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	167	15	samples	sample	NNS
cord-345211-4ivqlsgt	167	16	distinguished	distinguish	VBN
cord-345211-4ivqlsgt	167	17	between	between	IN
cord-345211-4ivqlsgt	167	18	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	167	19	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	167	20	and	and	CC
cord-345211-4ivqlsgt	167	21	asymptomatic	asymptomatic	JJ
cord-345211-4ivqlsgt	167	22	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	167	23	colonization	colonization	NN
cord-345211-4ivqlsgt	167	24	with	with	IN
cord-345211-4ivqlsgt	167	25	reasonable	reasonable	JJ
cord-345211-4ivqlsgt	167	26	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	167	27	accuracy	accuracy	NN
cord-345211-4ivqlsgt	167	28	[	[	-LRB-
cord-345211-4ivqlsgt	167	29	87	87	CD
cord-345211-4ivqlsgt	167	30	,	,	,
cord-345211-4ivqlsgt	167	31	88	88	CD
cord-345211-4ivqlsgt	167	32	]	]	-RRB-
cord-345211-4ivqlsgt	167	33	.	.	.
cord-345211-4ivqlsgt	168	1	Data	datum	NNS
cord-345211-4ivqlsgt	168	2	from	from	IN
cord-345211-4ivqlsgt	168	3	other	other	JJ
cord-345211-4ivqlsgt	168	4	populations	population	NNS
cord-345211-4ivqlsgt	168	5	are	be	VBP
cord-345211-4ivqlsgt	168	6	needed	need	VBN
cord-345211-4ivqlsgt	168	7	in	in	IN
cord-345211-4ivqlsgt	168	8	order	order	NN
cord-345211-4ivqlsgt	168	9	to	to	TO
cord-345211-4ivqlsgt	168	10	assess	assess	VB
cord-345211-4ivqlsgt	168	11	whether	whether	IN
cord-345211-4ivqlsgt	168	12	this	this	DT
cord-345211-4ivqlsgt	168	13	method	method	NN
cord-345211-4ivqlsgt	168	14	can	can	MD
cord-345211-4ivqlsgt	168	15	be	be	VB
cord-345211-4ivqlsgt	168	16	used	use	VBN
cord-345211-4ivqlsgt	168	17	in	in	IN
cord-345211-4ivqlsgt	168	18	clinical	clinical	JJ
cord-345211-4ivqlsgt	168	19	practice	practice	NN
cord-345211-4ivqlsgt	168	20	.	.	.
cord-345211-4ivqlsgt	169	1	Microbial	microbial	JJ
cord-345211-4ivqlsgt	169	2	load	load	NN
cord-345211-4ivqlsgt	169	3	in	in	IN
cord-345211-4ivqlsgt	169	4	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	169	5	can	can	MD
cord-345211-4ivqlsgt	169	6	also	also	RB
cord-345211-4ivqlsgt	169	7	be	be	VB
cord-345211-4ivqlsgt	169	8	a	a	DT
cord-345211-4ivqlsgt	169	9	prognostic	prognostic	JJ
cord-345211-4ivqlsgt	169	10	marker	marker	NN
cord-345211-4ivqlsgt	169	11	.	.	.
cord-345211-4ivqlsgt	170	1	For	for	IN
cord-345211-4ivqlsgt	170	2	example	example	NN
cord-345211-4ivqlsgt	170	3	,	,	,
cord-345211-4ivqlsgt	170	4	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	170	5	density	density	NN
cord-345211-4ivqlsgt	170	6	in	in	IN
cord-345211-4ivqlsgt	170	7	the	the	DT
cord-345211-4ivqlsgt	170	8	nasopharynx	nasopharynx	NN
cord-345211-4ivqlsgt	170	9	[	[	-LRB-
cord-345211-4ivqlsgt	170	10	89	89	CD
cord-345211-4ivqlsgt	170	11	]	]	-RRB-
cord-345211-4ivqlsgt	170	12	and	and	CC
cord-345211-4ivqlsgt	170	13	blood	blood	NN
cord-345211-4ivqlsgt	170	14	[	[	-LRB-
cord-345211-4ivqlsgt	170	15	90	90	CD
cord-345211-4ivqlsgt	170	16	,	,	,
cord-345211-4ivqlsgt	170	17	91	91	CD
cord-345211-4ivqlsgt	170	18	]	]	-RRB-
cord-345211-4ivqlsgt	170	19	are	be	VBP
cord-345211-4ivqlsgt	170	20	associated	associate	VBN
cord-345211-4ivqlsgt	170	21	with	with	IN
cord-345211-4ivqlsgt	170	22	disease	disease	NN
cord-345211-4ivqlsgt	170	23	severity	severity	NN
cord-345211-4ivqlsgt	170	24	in	in	IN
cord-345211-4ivqlsgt	170	25	adults	adult	NNS
cord-345211-4ivqlsgt	170	26	.	.	.
cord-345211-4ivqlsgt	171	1	We	-PRON-	PRP
cord-345211-4ivqlsgt	171	2	can	can	MD
cord-345211-4ivqlsgt	171	3	probably	probably	RB
cord-345211-4ivqlsgt	171	4	also	also	RB
cord-345211-4ivqlsgt	171	5	be	be	VB
cord-345211-4ivqlsgt	171	6	more	more	RBR
cord-345211-4ivqlsgt	171	7	innovative	innovative	JJ
cord-345211-4ivqlsgt	171	8	with	with	IN
cord-345211-4ivqlsgt	171	9	statistical	statistical	JJ
cord-345211-4ivqlsgt	171	10	methods	method	NNS
cord-345211-4ivqlsgt	171	11	to	to	TO
cord-345211-4ivqlsgt	171	12	help	help	VB
cord-345211-4ivqlsgt	171	13	interpret	interpret	VB
cord-345211-4ivqlsgt	171	14	molecular	molecular	JJ
cord-345211-4ivqlsgt	171	15	test	test	NN
cord-345211-4ivqlsgt	171	16	results	result	NNS
cord-345211-4ivqlsgt	171	17	.	.	.
cord-345211-4ivqlsgt	172	1	Statistical	statistical	JJ
cord-345211-4ivqlsgt	172	2	modeling	modeling	NN
cord-345211-4ivqlsgt	172	3	techniques	technique	NNS
cord-345211-4ivqlsgt	172	4	can	can	MD
cord-345211-4ivqlsgt	172	5	be	be	VB
cord-345211-4ivqlsgt	172	6	used	use	VBN
cord-345211-4ivqlsgt	172	7	to	to	TO
cord-345211-4ivqlsgt	172	8	help	help	VB
cord-345211-4ivqlsgt	172	9	overcome	overcome	VB
cord-345211-4ivqlsgt	172	10	the	the	DT
cord-345211-4ivqlsgt	172	11	limitations	limitation	NNS
cord-345211-4ivqlsgt	172	12	of	of	IN
cord-345211-4ivqlsgt	172	13	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	172	14	testing	testing	NN
cord-345211-4ivqlsgt	172	15	for	for	IN
cord-345211-4ivqlsgt	172	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	172	17	,	,	,
cord-345211-4ivqlsgt	172	18	particularly	particularly	RB
cord-345211-4ivqlsgt	172	19	the	the	DT
cord-345211-4ivqlsgt	172	20	lack	lack	NN
cord-345211-4ivqlsgt	172	21	of	of	IN
cord-345211-4ivqlsgt	172	22	good	good	JJ
cord-345211-4ivqlsgt	172	23	comparator	comparator	NN
cord-345211-4ivqlsgt	172	24	standards	standard	NNS
cord-345211-4ivqlsgt	172	25	.	.	.
cord-345211-4ivqlsgt	173	1	Latent	Latent	NNP
cord-345211-4ivqlsgt	173	2	class	class	NN
cord-345211-4ivqlsgt	173	3	analysis	analysis	NN
cord-345211-4ivqlsgt	173	4	has	have	VBZ
cord-345211-4ivqlsgt	173	5	been	be	VBN
cord-345211-4ivqlsgt	173	6	used	use	VBN
cord-345211-4ivqlsgt	173	7	to	to	TO
cord-345211-4ivqlsgt	173	8	determine	determine	VB
cord-345211-4ivqlsgt	173	9	the	the	DT
cord-345211-4ivqlsgt	173	10	prevalence	prevalence	NN
cord-345211-4ivqlsgt	173	11	of	of	IN
cord-345211-4ivqlsgt	173	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	173	13	caused	cause	VBN
cord-345211-4ivqlsgt	173	14	by	by	IN
cord-345211-4ivqlsgt	173	15	specific	specific	JJ
cord-345211-4ivqlsgt	173	16	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	173	17	in	in	IN
cord-345211-4ivqlsgt	173	18	epidemiologic	epidemiologic	JJ
cord-345211-4ivqlsgt	173	19	studies	study	NNS
cord-345211-4ivqlsgt	173	20	[	[	-LRB-
cord-345211-4ivqlsgt	173	21	92	92	CD
cord-345211-4ivqlsgt	173	22	,	,	,
cord-345211-4ivqlsgt	173	23	93	93	CD
cord-345211-4ivqlsgt	173	24	]	]	-RRB-
cord-345211-4ivqlsgt	173	25	and	and	CC
cord-345211-4ivqlsgt	173	26	for	for	IN
cord-345211-4ivqlsgt	173	27	the	the	DT
cord-345211-4ivqlsgt	173	28	assessment	assessment	NN
cord-345211-4ivqlsgt	173	29	of	of	IN
cord-345211-4ivqlsgt	173	30	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	173	31	tests	test	NNS
cord-345211-4ivqlsgt	173	32	in	in	IN
cord-345211-4ivqlsgt	173	33	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	173	34	[	[	-LRB-
cord-345211-4ivqlsgt	173	35	94	94	CD
cord-345211-4ivqlsgt	173	36	,	,	,
cord-345211-4ivqlsgt	173	37	95	95	CD
cord-345211-4ivqlsgt	173	38	]	]	-RRB-
cord-345211-4ivqlsgt	173	39	.	.	.
cord-345211-4ivqlsgt	174	1	Possibly	possibly	RB
cord-345211-4ivqlsgt	174	2	the	the	DT
cord-345211-4ivqlsgt	174	3	most	most	RBS
cord-345211-4ivqlsgt	174	4	sophisticated	sophisticated	JJ
cord-345211-4ivqlsgt	174	5	use	use	NN
cord-345211-4ivqlsgt	174	6	of	of	IN
cord-345211-4ivqlsgt	174	7	statistical	statistical	JJ
cord-345211-4ivqlsgt	174	8	modeling	modeling	NN
cord-345211-4ivqlsgt	174	9	techniques	technique	NNS
cord-345211-4ivqlsgt	174	10	in	in	IN
cord-345211-4ivqlsgt	174	11	the	the	DT
cord-345211-4ivqlsgt	174	12	context	context	NN
cord-345211-4ivqlsgt	174	13	of	of	IN
cord-345211-4ivqlsgt	174	14	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	174	15	etiology	etiology	NN
cord-345211-4ivqlsgt	174	16	is	be	VBZ
cord-345211-4ivqlsgt	174	17	currently	currently	RB
cord-345211-4ivqlsgt	174	18	being	be	VBG
cord-345211-4ivqlsgt	174	19	undertaken	undertake	VBN
cord-345211-4ivqlsgt	174	20	as	as	IN
cord-345211-4ivqlsgt	174	21	part	part	NN
cord-345211-4ivqlsgt	174	22	of	of	IN
cord-345211-4ivqlsgt	174	23	the	the	DT
cord-345211-4ivqlsgt	174	24	Pneumonia	Pneumonia	NNP
cord-345211-4ivqlsgt	174	25	Etiology	Etiology	NNP
cord-345211-4ivqlsgt	174	26	Research	Research	NNP
cord-345211-4ivqlsgt	174	27	for	for	IN
cord-345211-4ivqlsgt	174	28	Child	Child	NNP
cord-345211-4ivqlsgt	174	29	Health	Health	NNP
cord-345211-4ivqlsgt	174	30	(	(	-LRB-
cord-345211-4ivqlsgt	174	31	PERCH	PERCH	NNP
cord-345211-4ivqlsgt	174	32	)	)	-RRB-
cord-345211-4ivqlsgt	174	33	study	study	NN
cord-345211-4ivqlsgt	174	34	[	[	-LRB-
cord-345211-4ivqlsgt	174	35	96	96	CD
cord-345211-4ivqlsgt	174	36	]	]	-RRB-
cord-345211-4ivqlsgt	174	37	.	.	.
cord-345211-4ivqlsgt	175	1	PERCH	perch	NN
cord-345211-4ivqlsgt	175	2	is	be	VBZ
cord-345211-4ivqlsgt	175	3	a	a	DT
cord-345211-4ivqlsgt	175	4	large	large	JJ
cord-345211-4ivqlsgt	175	5	7-country	7-country	CD
cord-345211-4ivqlsgt	175	6	case	case	NN
cord-345211-4ivqlsgt	175	7	-	-	HYPH
cord-345211-4ivqlsgt	175	8	control	control	NN
cord-345211-4ivqlsgt	175	9	study	study	NN
cord-345211-4ivqlsgt	175	10	focused	focus	VBD
cord-345211-4ivqlsgt	175	11	on	on	IN
cord-345211-4ivqlsgt	175	12	the	the	DT
cord-345211-4ivqlsgt	175	13	causes	cause	NNS
cord-345211-4ivqlsgt	175	14	of	of	IN
cord-345211-4ivqlsgt	175	15	severe	severe	JJ
cord-345211-4ivqlsgt	175	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	175	17	in	in	IN
cord-345211-4ivqlsgt	175	18	young	young	JJ
cord-345211-4ivqlsgt	175	19	children	child	NNS
cord-345211-4ivqlsgt	175	20	from	from	IN
cord-345211-4ivqlsgt	175	21	developing	develop	VBG
cord-345211-4ivqlsgt	175	22	countries	country	NNS
cord-345211-4ivqlsgt	175	23	,	,	,
cord-345211-4ivqlsgt	175	24	the	the	DT
cord-345211-4ivqlsgt	175	25	findings	finding	NNS
cord-345211-4ivqlsgt	175	26	of	of	IN
cord-345211-4ivqlsgt	175	27	which	which	WDT
cord-345211-4ivqlsgt	175	28	will	will	MD
cord-345211-4ivqlsgt	175	29	be	be	VB
cord-345211-4ivqlsgt	175	30	published	publish	VBN
cord-345211-4ivqlsgt	175	31	in	in	IN
cord-345211-4ivqlsgt	175	32	2016	2016	CD
cord-345211-4ivqlsgt	175	33	.	.	.
cord-345211-4ivqlsgt	176	1	In	in	IN
cord-345211-4ivqlsgt	176	2	this	this	DT
cord-345211-4ivqlsgt	176	3	study	study	NN
cord-345211-4ivqlsgt	176	4	,	,	,
cord-345211-4ivqlsgt	176	5	partially	partially	RB
cord-345211-4ivqlsgt	176	6	latent	latent	JJ
cord-345211-4ivqlsgt	176	7	class	class	NN
cord-345211-4ivqlsgt	176	8	models	model	NNS
cord-345211-4ivqlsgt	176	9	have	have	VBP
cord-345211-4ivqlsgt	176	10	been	be	VBN
cord-345211-4ivqlsgt	176	11	designed	design	VBN
cord-345211-4ivqlsgt	176	12	for	for	IN
cord-345211-4ivqlsgt	176	13	estimating	estimate	VBG
cord-345211-4ivqlsgt	176	14	the	the	DT
cord-345211-4ivqlsgt	176	15	population	population	NN
cord-345211-4ivqlsgt	176	16	etiology	etiology	NN
cord-345211-4ivqlsgt	176	17	distribution	distribution	NN
cord-345211-4ivqlsgt	176	18	and	and	CC
cord-345211-4ivqlsgt	176	19	the	the	DT
cord-345211-4ivqlsgt	176	20	individual	individual	JJ
cord-345211-4ivqlsgt	176	21	etiology	etiology	NN
cord-345211-4ivqlsgt	176	22	probabilities	probability	NNS
cord-345211-4ivqlsgt	176	23	for	for	IN
cord-345211-4ivqlsgt	176	24	specific	specific	JJ
cord-345211-4ivqlsgt	176	25	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	176	26	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	176	27	,	,	,
cord-345211-4ivqlsgt	176	28	with	with	IN
cord-345211-4ivqlsgt	176	29	a	a	DT
cord-345211-4ivqlsgt	176	30	major	major	JJ
cord-345211-4ivqlsgt	176	31	focus	focus	NN
cord-345211-4ivqlsgt	176	32	on	on	IN
cord-345211-4ivqlsgt	176	33	molecular	molecular	JJ
cord-345211-4ivqlsgt	176	34	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	176	35	test	test	NN
cord-345211-4ivqlsgt	176	36	results	result	NNS
cord-345211-4ivqlsgt	176	37	[	[	-LRB-
cord-345211-4ivqlsgt	176	38	97	97	CD
cord-345211-4ivqlsgt	176	39	]	]	-RRB-
cord-345211-4ivqlsgt	176	40	.	.	.
cord-345211-4ivqlsgt	177	1	The	the	DT
cord-345211-4ivqlsgt	177	2	findings	finding	NNS
cord-345211-4ivqlsgt	177	3	of	of	IN
cord-345211-4ivqlsgt	177	4	PERCH	perch	NN
cord-345211-4ivqlsgt	177	5	are	be	VBP
cord-345211-4ivqlsgt	177	6	awaited	await	VBN
cord-345211-4ivqlsgt	177	7	with	with	IN
cord-345211-4ivqlsgt	177	8	great	great	JJ
cord-345211-4ivqlsgt	177	9	anticipation	anticipation	NN
cord-345211-4ivqlsgt	177	10	,	,	,
cord-345211-4ivqlsgt	177	11	as	as	IN
cord-345211-4ivqlsgt	177	12	this	this	DT
cord-345211-4ivqlsgt	177	13	approach	approach	NN
cord-345211-4ivqlsgt	177	14	has	have	VBZ
cord-345211-4ivqlsgt	177	15	never	never	RB
cord-345211-4ivqlsgt	177	16	before	before	RB
cord-345211-4ivqlsgt	177	17	been	be	VBN
cord-345211-4ivqlsgt	177	18	so	so	RB
cord-345211-4ivqlsgt	177	19	extensively	extensively	RB
cord-345211-4ivqlsgt	177	20	applied	apply	VBN
cord-345211-4ivqlsgt	177	21	to	to	IN
cord-345211-4ivqlsgt	177	22	the	the	DT
cord-345211-4ivqlsgt	177	23	etiology	etiology	NN
cord-345211-4ivqlsgt	177	24	of	of	IN
cord-345211-4ivqlsgt	177	25	an	an	DT
cord-345211-4ivqlsgt	177	26	infectious	infectious	JJ
cord-345211-4ivqlsgt	177	27	disease	disease	NN
cord-345211-4ivqlsgt	177	28	.	.	.
cord-345211-4ivqlsgt	178	1	We	-PRON-	PRP
cord-345211-4ivqlsgt	178	2	have	have	VBP
cord-345211-4ivqlsgt	178	3	entered	enter	VBN
cord-345211-4ivqlsgt	178	4	a	a	DT
cord-345211-4ivqlsgt	178	5	new	new	JJ
cord-345211-4ivqlsgt	178	6	age	age	NN
cord-345211-4ivqlsgt	178	7	in	in	IN
cord-345211-4ivqlsgt	178	8	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	178	9	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	178	10	that	that	WDT
cord-345211-4ivqlsgt	178	11	needs	need	VBZ
cord-345211-4ivqlsgt	178	12	to	to	TO
cord-345211-4ivqlsgt	178	13	look	look	VB
cord-345211-4ivqlsgt	178	14	beyond	beyond	IN
cord-345211-4ivqlsgt	178	15	the	the	DT
cord-345211-4ivqlsgt	178	16	targeting	targeting	NN
cord-345211-4ivqlsgt	178	17	of	of	IN
cord-345211-4ivqlsgt	178	18	a	a	DT
cord-345211-4ivqlsgt	178	19	limited	limited	JJ
cord-345211-4ivqlsgt	178	20	number	number	NN
cord-345211-4ivqlsgt	178	21	of	of	IN
cord-345211-4ivqlsgt	178	22	potential	potential	JJ
cord-345211-4ivqlsgt	178	23	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	178	24	.	.	.
cord-345211-4ivqlsgt	179	1	New	new	JJ
cord-345211-4ivqlsgt	179	2	knowledge	knowledge	NN
cord-345211-4ivqlsgt	179	3	about	about	IN
cord-345211-4ivqlsgt	179	4	the	the	DT
cord-345211-4ivqlsgt	179	5	lung	lung	NN
cord-345211-4ivqlsgt	179	6	microbiome	microbiome	NN
cord-345211-4ivqlsgt	179	7	and	and	CC
cord-345211-4ivqlsgt	179	8	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	179	9	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	179	10	,	,	,
cord-345211-4ivqlsgt	179	11	together	together	RB
cord-345211-4ivqlsgt	179	12	with	with	IN
cord-345211-4ivqlsgt	179	13	emerging	emerge	VBG
cord-345211-4ivqlsgt	179	14	developments	development	NNS
cord-345211-4ivqlsgt	179	15	in	in	IN
cord-345211-4ivqlsgt	179	16	sequencing	sequencing	NN
cord-345211-4ivqlsgt	179	17	technology	technology	NN
cord-345211-4ivqlsgt	179	18	,	,	,
cord-345211-4ivqlsgt	179	19	provide	provide	VB
cord-345211-4ivqlsgt	179	20	opportunities	opportunity	NNS
cord-345211-4ivqlsgt	179	21	for	for	IN
cord-345211-4ivqlsgt	179	22	novel	novel	JJ
cord-345211-4ivqlsgt	179	23	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	179	24	tools	tool	NNS
cord-345211-4ivqlsgt	179	25	to	to	TO
cord-345211-4ivqlsgt	179	26	help	help	VB
cord-345211-4ivqlsgt	179	27	better	well	RBR
cord-345211-4ivqlsgt	179	28	guide	guide	VB
cord-345211-4ivqlsgt	179	29	the	the	DT
cord-345211-4ivqlsgt	179	30	management	management	NN
cord-345211-4ivqlsgt	179	31	of	of	IN
cord-345211-4ivqlsgt	179	32	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	179	33	.	.	.
cord-345211-4ivqlsgt	180	1	Molecular	molecular	JJ
cord-345211-4ivqlsgt	180	2	tests	test	NNS
cord-345211-4ivqlsgt	180	3	are	be	VBP
cord-345211-4ivqlsgt	180	4	now	now	RB
cord-345211-4ivqlsgt	180	5	mainstream	mainstream	JJ
cord-345211-4ivqlsgt	180	6	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	180	7	for	for	IN
cord-345211-4ivqlsgt	180	8	many	many	JJ
cord-345211-4ivqlsgt	180	9	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	180	10	infections	infection	NNS
cord-345211-4ivqlsgt	180	11	,	,	,
cord-345211-4ivqlsgt	180	12	although	although	IN
cord-345211-4ivqlsgt	180	13	we	-PRON-	PRP
cord-345211-4ivqlsgt	180	14	still	still	RB
cord-345211-4ivqlsgt	180	15	have	have	VBP
cord-345211-4ivqlsgt	180	16	much	much	JJ
cord-345211-4ivqlsgt	180	17	to	to	TO
cord-345211-4ivqlsgt	180	18	learn	learn	VB
cord-345211-4ivqlsgt	180	19	about	about	IN
cord-345211-4ivqlsgt	180	20	using	use	VBG
cord-345211-4ivqlsgt	180	21	them	-PRON-	PRP
cord-345211-4ivqlsgt	180	22	more	more	RBR
cord-345211-4ivqlsgt	180	23	effectively	effectively	RB
cord-345211-4ivqlsgt	180	24	to	to	TO
cord-345211-4ivqlsgt	180	25	assist	assist	VB
cord-345211-4ivqlsgt	180	26	with	with	IN
cord-345211-4ivqlsgt	180	27	the	the	DT
cord-345211-4ivqlsgt	180	28	management	management	NN
cord-345211-4ivqlsgt	180	29	of	of	IN
cord-345211-4ivqlsgt	180	30	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	180	31	.	.	.
cord-345211-4ivqlsgt	181	1	Those	those	DT
cord-345211-4ivqlsgt	181	2	involved	involve	VBN
cord-345211-4ivqlsgt	181	3	in	in	IN
cord-345211-4ivqlsgt	181	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	181	5	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	181	6	test	test	NN
cord-345211-4ivqlsgt	181	7	development	development	NN
cord-345211-4ivqlsgt	181	8	for	for	IN
cord-345211-4ivqlsgt	181	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	181	10	need	need	VBP
cord-345211-4ivqlsgt	181	11	to	to	TO
cord-345211-4ivqlsgt	181	12	look	look	VB
cord-345211-4ivqlsgt	181	13	beyond	beyond	IN
cord-345211-4ivqlsgt	181	14	the	the	DT
cord-345211-4ivqlsgt	181	15	simple	simple	JJ
cord-345211-4ivqlsgt	181	16	detection	detection	NN
cord-345211-4ivqlsgt	181	17	of	of	IN
cord-345211-4ivqlsgt	181	18	specific	specific	JJ
cord-345211-4ivqlsgt	181	19	known	know	VBN
cord-345211-4ivqlsgt	181	20	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	181	21	and	and	CC
cord-345211-4ivqlsgt	181	22	also	also	RB
cord-345211-4ivqlsgt	181	23	provide	provide	VB
cord-345211-4ivqlsgt	181	24	means	mean	NNS
cord-345211-4ivqlsgt	181	25	to	to	TO
cord-345211-4ivqlsgt	181	26	accurately	accurately	RB
cord-345211-4ivqlsgt	181	27	interpret	interpret	VB
cord-345211-4ivqlsgt	181	28	the	the	DT
cord-345211-4ivqlsgt	181	29	clinical	clinical	JJ
cord-345211-4ivqlsgt	181	30	significance	significance	NN
cord-345211-4ivqlsgt	181	31	of	of	IN
cord-345211-4ivqlsgt	181	32	a	a	DT
cord-345211-4ivqlsgt	181	33	positive	positive	JJ
cord-345211-4ivqlsgt	181	34	result	result	NN
cord-345211-4ivqlsgt	181	35	.	.	.
cord-345211-4ivqlsgt	182	1	It	-PRON-	PRP
cord-345211-4ivqlsgt	182	2	is	be	VBZ
cord-345211-4ivqlsgt	182	3	not	not	RB
cord-345211-4ivqlsgt	182	4	good	good	JJ
cord-345211-4ivqlsgt	182	5	enough	enough	RB
cord-345211-4ivqlsgt	182	6	to	to	TO
cord-345211-4ivqlsgt	182	7	simply	simply	RB
cord-345211-4ivqlsgt	182	8	assess	assess	VB
cord-345211-4ivqlsgt	182	9	a	a	DT
cord-345211-4ivqlsgt	182	10	new	new	JJ
cord-345211-4ivqlsgt	182	11	test	test	NN
cord-345211-4ivqlsgt	182	12	by	by	IN
cord-345211-4ivqlsgt	182	13	measuring	measure	VBG
cord-345211-4ivqlsgt	182	14	analytical	analytical	JJ
cord-345211-4ivqlsgt	182	15	sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	182	16	and	and	CC
cord-345211-4ivqlsgt	182	17	making	make	VBG
cord-345211-4ivqlsgt	182	18	comparisons	comparison	NNS
cord-345211-4ivqlsgt	182	19	to	to	IN
cord-345211-4ivqlsgt	182	20	the	the	DT
cord-345211-4ivqlsgt	182	21	performance	performance	NN
cord-345211-4ivqlsgt	182	22	of	of	IN
cord-345211-4ivqlsgt	182	23	other	other	JJ
cord-345211-4ivqlsgt	182	24	similar	similar	JJ
cord-345211-4ivqlsgt	182	25	assays	assay	NNS
cord-345211-4ivqlsgt	182	26	.	.	.
cord-345211-4ivqlsgt	183	1	Diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	183	2	tests	test	NNS
cord-345211-4ivqlsgt	183	3	must	must	MD
cord-345211-4ivqlsgt	183	4	be	be	VB
cord-345211-4ivqlsgt	183	5	evaluated	evaluate	VBN
cord-345211-4ivqlsgt	183	6	properly	properly	RB
cord-345211-4ivqlsgt	183	7	following	follow	VBG
cord-345211-4ivqlsgt	183	8	good	good	JJ
cord-345211-4ivqlsgt	183	9	epidemiological	epidemiological	JJ
cord-345211-4ivqlsgt	183	10	principles	principle	NNS
cord-345211-4ivqlsgt	183	11	.	.	.
cord-345211-4ivqlsgt	184	1	New	new	JJ
cord-345211-4ivqlsgt	184	2	developments	development	NNS
cord-345211-4ivqlsgt	184	3	in	in	IN
cord-345211-4ivqlsgt	184	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	184	5	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	184	6	must	must	MD
cord-345211-4ivqlsgt	184	7	also	also	RB
cord-345211-4ivqlsgt	184	8	be	be	VB
cord-345211-4ivqlsgt	184	9	cognizant	cognizant	JJ
cord-345211-4ivqlsgt	184	10	of	of	IN
cord-345211-4ivqlsgt	184	11	emerging	emerge	VBG
cord-345211-4ivqlsgt	184	12	information	information	NN
cord-345211-4ivqlsgt	184	13	about	about	IN
cord-345211-4ivqlsgt	184	14	the	the	DT
cord-345211-4ivqlsgt	184	15	lung	lung	NN
cord-345211-4ivqlsgt	184	16	microbiome	microbiome	NN
cord-345211-4ivqlsgt	184	17	,	,	,
cord-345211-4ivqlsgt	184	18	which	which	WDT
cord-345211-4ivqlsgt	184	19	will	will	MD
cord-345211-4ivqlsgt	184	20	likely	likely	RB
cord-345211-4ivqlsgt	184	21	provide	provide	VB
cord-345211-4ivqlsgt	184	22	opportunities	opportunity	NNS
cord-345211-4ivqlsgt	184	23	for	for	IN
cord-345211-4ivqlsgt	184	24	the	the	DT
cord-345211-4ivqlsgt	184	25	discovery	discovery	NN
cord-345211-4ivqlsgt	184	26	of	of	IN
cord-345211-4ivqlsgt	184	27	novel	novel	JJ
cord-345211-4ivqlsgt	184	28	markers	marker	NNS
cord-345211-4ivqlsgt	184	29	to	to	TO
cord-345211-4ivqlsgt	184	30	help	help	VB
cord-345211-4ivqlsgt	184	31	guide	guide	VB
cord-345211-4ivqlsgt	184	32	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	184	33	management	management	NN
cord-345211-4ivqlsgt	184	34	.	.	.
cord-345211-4ivqlsgt	185	1	The	the	DT
cord-345211-4ivqlsgt	185	2	recent	recent	JJ
cord-345211-4ivqlsgt	185	3	expansion	expansion	NN
cord-345211-4ivqlsgt	185	4	in	in	IN
cord-345211-4ivqlsgt	185	5	the	the	DT
cord-345211-4ivqlsgt	185	6	number	number	NN
cord-345211-4ivqlsgt	185	7	and	and	CC
cord-345211-4ivqlsgt	185	8	variety	variety	NN
cord-345211-4ivqlsgt	185	9	of	of	IN
cord-345211-4ivqlsgt	185	10	commercial	commercial	JJ
cord-345211-4ivqlsgt	185	11	NATs	NATs	NNP
cord-345211-4ivqlsgt	185	12	is	be	VBZ
cord-345211-4ivqlsgt	185	13	likely	likely	JJ
cord-345211-4ivqlsgt	185	14	to	to	TO
cord-345211-4ivqlsgt	185	15	continue	continue	VB
cord-345211-4ivqlsgt	185	16	,	,	,
cord-345211-4ivqlsgt	185	17	leading	lead	VBG
cord-345211-4ivqlsgt	185	18	to	to	IN
cord-345211-4ivqlsgt	185	19	greater	great	JJR
cord-345211-4ivqlsgt	185	20	uptake	uptake	NN
cord-345211-4ivqlsgt	185	21	by	by	IN
cord-345211-4ivqlsgt	185	22	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	185	23	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	185	24	and	and	CC
cord-345211-4ivqlsgt	185	25	greater	great	JJR
cord-345211-4ivqlsgt	185	26	incorporation	incorporation	NN
cord-345211-4ivqlsgt	185	27	into	into	IN
cord-345211-4ivqlsgt	185	28	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	185	29	test	test	NN
cord-345211-4ivqlsgt	185	30	algorithms	algorithm	NNS
cord-345211-4ivqlsgt	185	31	and	and	CC
cord-345211-4ivqlsgt	185	32	guidelines	guideline	NNS
cord-345211-4ivqlsgt	185	33	for	for	IN
cord-345211-4ivqlsgt	185	34	the	the	DT
cord-345211-4ivqlsgt	185	35	management	management	NN
cord-345211-4ivqlsgt	185	36	of	of	IN
cord-345211-4ivqlsgt	185	37	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	185	38	.	.	.
cord-345211-4ivqlsgt	186	1	The	the	DT
cord-345211-4ivqlsgt	186	2	provision	provision	NN
cord-345211-4ivqlsgt	186	3	of	of	IN
cord-345211-4ivqlsgt	186	4	even	even	RB
cord-345211-4ivqlsgt	186	5	more	more	JJR
cord-345211-4ivqlsgt	186	6	user	user	NN
cord-345211-4ivqlsgt	186	7	-	-	HYPH
cord-345211-4ivqlsgt	186	8	friendly	friendly	JJ
cord-345211-4ivqlsgt	186	9	platforms	platform	NNS
cord-345211-4ivqlsgt	186	10	will	will	MD
cord-345211-4ivqlsgt	186	11	enable	enable	VB
cord-345211-4ivqlsgt	186	12	deployment	deployment	NN
cord-345211-4ivqlsgt	186	13	of	of	IN
cord-345211-4ivqlsgt	186	14	these	these	DT
cord-345211-4ivqlsgt	186	15	tests	test	NNS
cord-345211-4ivqlsgt	186	16	in	in	IN
cord-345211-4ivqlsgt	186	17	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	186	18	that	that	WDT
cord-345211-4ivqlsgt	186	19	have	have	VBP
cord-345211-4ivqlsgt	186	20	not	not	RB
cord-345211-4ivqlsgt	186	21	traditionally	traditionally	RB
cord-345211-4ivqlsgt	186	22	used	use	VBN
cord-345211-4ivqlsgt	186	23	molecular	molecular	JJ
cord-345211-4ivqlsgt	186	24	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	186	25	.	.	.
cord-345211-4ivqlsgt	187	1	Further	further	JJ
cord-345211-4ivqlsgt	187	2	efforts	effort	NNS
cord-345211-4ivqlsgt	187	3	are	be	VBP
cord-345211-4ivqlsgt	187	4	needed	need	VBN
cord-345211-4ivqlsgt	187	5	to	to	TO
cord-345211-4ivqlsgt	187	6	evaluate	evaluate	VB
cord-345211-4ivqlsgt	187	7	the	the	DT
cord-345211-4ivqlsgt	187	8	clinical	clinical	JJ
cord-345211-4ivqlsgt	187	9	application	application	NN
cord-345211-4ivqlsgt	187	10	of	of	IN
cord-345211-4ivqlsgt	187	11	microbial	microbial	JJ
cord-345211-4ivqlsgt	187	12	load	load	NN
cord-345211-4ivqlsgt	187	13	measurement	measurement	NN
cord-345211-4ivqlsgt	187	14	for	for	IN
cord-345211-4ivqlsgt	187	15	the	the	DT
cord-345211-4ivqlsgt	187	16	purpose	purpose	NN
cord-345211-4ivqlsgt	187	17	of	of	IN
cord-345211-4ivqlsgt	187	18	distinguishing	distinguish	VBG
cord-345211-4ivqlsgt	187	19	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	187	20	from	from	IN
cord-345211-4ivqlsgt	187	21	colonizing	colonize	VBG
cord-345211-4ivqlsgt	187	22	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	187	23	and	and	CC
cord-345211-4ivqlsgt	187	24	as	as	IN
cord-345211-4ivqlsgt	187	25	a	a	DT
cord-345211-4ivqlsgt	187	26	prognostic	prognostic	JJ
cord-345211-4ivqlsgt	187	27	marker	marker	NN
cord-345211-4ivqlsgt	187	28	.	.	.
cord-345211-4ivqlsgt	188	1	It	-PRON-	PRP
cord-345211-4ivqlsgt	188	2	is	be	VBZ
cord-345211-4ivqlsgt	188	3	still	still	RB
cord-345211-4ivqlsgt	188	4	unclear	unclear	JJ
cord-345211-4ivqlsgt	188	5	about	about	IN
cord-345211-4ivqlsgt	188	6	how	how	WRB
cord-345211-4ivqlsgt	188	7	new	new	JJ
cord-345211-4ivqlsgt	188	8	knowledge	knowledge	NN
cord-345211-4ivqlsgt	188	9	about	about	IN
cord-345211-4ivqlsgt	188	10	the	the	DT
cord-345211-4ivqlsgt	188	11	lung	lung	NN
cord-345211-4ivqlsgt	188	12	microbiome	microbiome	NN
cord-345211-4ivqlsgt	188	13	will	will	MD
cord-345211-4ivqlsgt	188	14	affect	affect	VB
cord-345211-4ivqlsgt	188	15	the	the	DT
cord-345211-4ivqlsgt	188	16	development	development	NN
cord-345211-4ivqlsgt	188	17	of	of	IN
cord-345211-4ivqlsgt	188	18	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	188	19	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	188	20	,	,	,
cord-345211-4ivqlsgt	188	21	but	but	CC
cord-345211-4ivqlsgt	188	22	the	the	DT
cord-345211-4ivqlsgt	188	23	impact	impact	NN
cord-345211-4ivqlsgt	188	24	may	may	MD
cord-345211-4ivqlsgt	188	25	be	be	VB
cord-345211-4ivqlsgt	188	26	profound	profound	JJ
cord-345211-4ivqlsgt	188	27	.	.	.
cord-345211-4ivqlsgt	189	1	While	while	IN
cord-345211-4ivqlsgt	189	2	it	-PRON-	PRP
cord-345211-4ivqlsgt	189	3	will	will	MD
cord-345211-4ivqlsgt	189	4	be	be	VB
cord-345211-4ivqlsgt	189	5	some	some	DT
cord-345211-4ivqlsgt	189	6	time	time	NN
cord-345211-4ivqlsgt	189	7	before	before	IN
cord-345211-4ivqlsgt	189	8	next	next	JJ
cord-345211-4ivqlsgt	189	9	generation	generation	NN
cord-345211-4ivqlsgt	189	10	sequencing	sequencing	NN
cord-345211-4ivqlsgt	189	11	becomes	become	VBZ
cord-345211-4ivqlsgt	189	12	a	a	DT
cord-345211-4ivqlsgt	189	13	standard	standard	JJ
cord-345211-4ivqlsgt	189	14	tool	tool	NN
cord-345211-4ivqlsgt	189	15	in	in	IN
cord-345211-4ivqlsgt	189	16	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	189	17	laboratories	laboratory	NNS
cord-345211-4ivqlsgt	189	18	,	,	,
cord-345211-4ivqlsgt	189	19	this	this	DT
cord-345211-4ivqlsgt	189	20	technology	technology	NN
cord-345211-4ivqlsgt	189	21	may	may	MD
cord-345211-4ivqlsgt	189	22	provide	provide	VB
cord-345211-4ivqlsgt	189	23	valuable	valuable	JJ
cord-345211-4ivqlsgt	189	24	insights	insight	NNS
cord-345211-4ivqlsgt	189	25	into	into	IN
cord-345211-4ivqlsgt	189	26	the	the	DT
cord-345211-4ivqlsgt	189	27	lung	lung	NN
cord-345211-4ivqlsgt	189	28	microbial	microbial	NN
cord-345211-4ivqlsgt	189	29	ecology	ecology	NN
cord-345211-4ivqlsgt	189	30	in	in	IN
cord-345211-4ivqlsgt	189	31	health	health	NN
cord-345211-4ivqlsgt	189	32	and	and	CC
cord-345211-4ivqlsgt	189	33	disease	disease	NN
cord-345211-4ivqlsgt	189	34	and	and	CC
cord-345211-4ivqlsgt	189	35	a	a	DT
cord-345211-4ivqlsgt	189	36	greater	great	JJR
cord-345211-4ivqlsgt	189	37	understanding	understanding	NN
cord-345211-4ivqlsgt	189	38	of	of	IN
cord-345211-4ivqlsgt	189	39	the	the	DT
cord-345211-4ivqlsgt	189	40	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	189	41	of	of	IN
cord-345211-4ivqlsgt	189	42	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	189	43	.	.	.
cord-345211-4ivqlsgt	190	1	With	with	IN
cord-345211-4ivqlsgt	190	2	this	this	DT
cord-345211-4ivqlsgt	190	3	comes	come	VBZ
cord-345211-4ivqlsgt	190	4	a	a	DT
cord-345211-4ivqlsgt	190	5	shift	shift	NN
cord-345211-4ivqlsgt	190	6	away	away	RB
cord-345211-4ivqlsgt	190	7	from	from	IN
cord-345211-4ivqlsgt	190	8	the	the	DT
cord-345211-4ivqlsgt	190	9	targeting	targeting	NN
cord-345211-4ivqlsgt	190	10	of	of	IN
cord-345211-4ivqlsgt	190	11	a	a	DT
cord-345211-4ivqlsgt	190	12	limited	limited	JJ
cord-345211-4ivqlsgt	190	13	number	number	NN
cord-345211-4ivqlsgt	190	14	of	of	IN
cord-345211-4ivqlsgt	190	15	putative	putative	JJ
cord-345211-4ivqlsgt	190	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	190	17	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	190	18	toward	toward	IN
cord-345211-4ivqlsgt	190	19	the	the	DT
cord-345211-4ivqlsgt	190	20	identification	identification	NN
cord-345211-4ivqlsgt	190	21	of	of	IN
cord-345211-4ivqlsgt	190	22	signal	signal	NN
cord-345211-4ivqlsgt	190	23	patterns	pattern	NNS
cord-345211-4ivqlsgt	190	24	characteristic	characteristic	JJ
cord-345211-4ivqlsgt	190	25	of	of	IN
cord-345211-4ivqlsgt	190	26	different	different	JJ
cord-345211-4ivqlsgt	190	27	etiologies	etiology	NNS
cord-345211-4ivqlsgt	190	28	and	and	CC
cord-345211-4ivqlsgt	190	29	stages	stage	NNS
cord-345211-4ivqlsgt	190	30	of	of	IN
cord-345211-4ivqlsgt	190	31	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	190	32	.	.	.
cord-345211-4ivqlsgt	191	1	The	the	DT
cord-345211-4ivqlsgt	191	2	hope	hope	NN
cord-345211-4ivqlsgt	191	3	is	be	VBZ
cord-345211-4ivqlsgt	191	4	that	that	IN
cord-345211-4ivqlsgt	191	5	these	these	DT
cord-345211-4ivqlsgt	191	6	signals	signal	NNS
cord-345211-4ivqlsgt	191	7	will	will	MD
cord-345211-4ivqlsgt	191	8	have	have	VB
cord-345211-4ivqlsgt	191	9	sufficient	sufficient	JJ
cord-345211-4ivqlsgt	191	10	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	191	11	accuracy	accuracy	NN
cord-345211-4ivqlsgt	191	12	to	to	TO
cord-345211-4ivqlsgt	191	13	help	help	VB
cord-345211-4ivqlsgt	191	14	guide	guide	VB
cord-345211-4ivqlsgt	191	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	191	16	management	management	NN
cord-345211-4ivqlsgt	191	17	.	.	.
cord-345211-4ivqlsgt	192	1	The	the	DT
cord-345211-4ivqlsgt	192	2	author	author	NN
cord-345211-4ivqlsgt	192	3	has	have	VBZ
cord-345211-4ivqlsgt	192	4	no	no	DT
cord-345211-4ivqlsgt	192	5	relevant	relevant	JJ
cord-345211-4ivqlsgt	192	6	affiliations	affiliation	NNS
cord-345211-4ivqlsgt	192	7	or	or	CC
cord-345211-4ivqlsgt	192	8	financial	financial	JJ
cord-345211-4ivqlsgt	192	9	involvement	involvement	NN
cord-345211-4ivqlsgt	192	10	with	with	IN
cord-345211-4ivqlsgt	192	11	any	any	DT
cord-345211-4ivqlsgt	192	12	organization	organization	NN
cord-345211-4ivqlsgt	192	13	or	or	CC
cord-345211-4ivqlsgt	192	14	entity	entity	NN
cord-345211-4ivqlsgt	192	15	with	with	IN
cord-345211-4ivqlsgt	192	16	a	a	DT
cord-345211-4ivqlsgt	192	17	financial	financial	JJ
cord-345211-4ivqlsgt	192	18	interest	interest	NN
cord-345211-4ivqlsgt	192	19	in	in	IN
cord-345211-4ivqlsgt	192	20	or	or	CC
cord-345211-4ivqlsgt	192	21	financial	financial	JJ
cord-345211-4ivqlsgt	192	22	conflict	conflict	NN
cord-345211-4ivqlsgt	192	23	with	with	IN
cord-345211-4ivqlsgt	192	24	the	the	DT
cord-345211-4ivqlsgt	192	25	subject	subject	JJ
cord-345211-4ivqlsgt	192	26	matter	matter	NN
cord-345211-4ivqlsgt	192	27	or	or	CC
cord-345211-4ivqlsgt	192	28	materials	material	NNS
cord-345211-4ivqlsgt	192	29	discussed	discuss	VBN
cord-345211-4ivqlsgt	192	30	in	in	IN
cord-345211-4ivqlsgt	192	31	the	the	DT
cord-345211-4ivqlsgt	192	32	manuscript	manuscript	NN
cord-345211-4ivqlsgt	192	33	.	.	.
cord-345211-4ivqlsgt	193	1	This	this	DT
cord-345211-4ivqlsgt	193	2	includes	include	VBZ
cord-345211-4ivqlsgt	193	3	employment	employment	NN
cord-345211-4ivqlsgt	193	4	,	,	,
cord-345211-4ivqlsgt	193	5	consultancies	consultancy	NNS
cord-345211-4ivqlsgt	193	6	,	,	,
cord-345211-4ivqlsgt	193	7	honoraria	honorarium	NNS
cord-345211-4ivqlsgt	193	8	,	,	,
cord-345211-4ivqlsgt	193	9	stock	stock	NN
cord-345211-4ivqlsgt	193	10	ownership	ownership	NN
cord-345211-4ivqlsgt	193	11	or	or	CC
cord-345211-4ivqlsgt	193	12	options	option	NNS
cord-345211-4ivqlsgt	193	13	,	,	,
cord-345211-4ivqlsgt	193	14	expert	expert	JJ
cord-345211-4ivqlsgt	193	15	testimony	testimony	NN
cord-345211-4ivqlsgt	193	16	,	,	,
cord-345211-4ivqlsgt	193	17	grants	grant	NNS
cord-345211-4ivqlsgt	193	18	or	or	CC
cord-345211-4ivqlsgt	193	19	patents	patent	NNS
cord-345211-4ivqlsgt	193	20	received	receive	VBN
cord-345211-4ivqlsgt	193	21	or	or	CC
cord-345211-4ivqlsgt	193	22	pending	pende	VBG
cord-345211-4ivqlsgt	193	23	,	,	,
cord-345211-4ivqlsgt	193	24	or	or	CC
cord-345211-4ivqlsgt	193	25	royalties	royalty	NNS
cord-345211-4ivqlsgt	193	26	.	.	.
cord-345211-4ivqlsgt	194	1	•	•	NNP
cord-345211-4ivqlsgt	195	1	Identifying	identify	VBG
cord-345211-4ivqlsgt	195	2	the	the	DT
cord-345211-4ivqlsgt	195	3	microbial	microbial	JJ
cord-345211-4ivqlsgt	195	4	etiology	etiology	NN
cord-345211-4ivqlsgt	195	5	of	of	IN
cord-345211-4ivqlsgt	195	6	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	195	7	is	be	VBZ
cord-345211-4ivqlsgt	195	8	challenging	challenging	JJ
cord-345211-4ivqlsgt	195	9	,	,	,
cord-345211-4ivqlsgt	195	10	largely	largely	RB
cord-345211-4ivqlsgt	195	11	due	due	JJ
cord-345211-4ivqlsgt	195	12	to	to	IN
cord-345211-4ivqlsgt	195	13	difficulty	difficulty	NN
cord-345211-4ivqlsgt	195	14	in	in	IN
cord-345211-4ivqlsgt	195	15	obtaining	obtain	VBG
cord-345211-4ivqlsgt	195	16	uncontaminated	uncontaminated	JJ
cord-345211-4ivqlsgt	195	17	specimens	specimen	NNS
cord-345211-4ivqlsgt	195	18	from	from	IN
cord-345211-4ivqlsgt	195	19	the	the	DT
cord-345211-4ivqlsgt	195	20	site	site	NN
cord-345211-4ivqlsgt	195	21	of	of	IN
cord-345211-4ivqlsgt	195	22	infection	infection	NN
cord-345211-4ivqlsgt	195	23	and	and	CC
cord-345211-4ivqlsgt	195	24	in	in	IN
cord-345211-4ivqlsgt	195	25	discriminating	discriminate	VBG
cord-345211-4ivqlsgt	195	26	between	between	IN
cord-345211-4ivqlsgt	195	27	colonizing	colonize	VBG
cord-345211-4ivqlsgt	195	28	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	195	29	and	and	CC
cord-345211-4ivqlsgt	195	30	true	true	JJ
cord-345211-4ivqlsgt	195	31	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	195	32	.	.	.
cord-345211-4ivqlsgt	196	1	•	•	NNP
cord-345211-4ivqlsgt	197	1	Molecular	molecular	JJ
cord-345211-4ivqlsgt	197	2	tests	test	NNS
cord-345211-4ivqlsgt	197	3	,	,	,
cord-345211-4ivqlsgt	197	4	particularly	particularly	RB
cord-345211-4ivqlsgt	197	5	NATs	NATs	NNP
cord-345211-4ivqlsgt	197	6	,	,	,
cord-345211-4ivqlsgt	197	7	have	have	VBP
cord-345211-4ivqlsgt	197	8	been	be	VBN
cord-345211-4ivqlsgt	197	9	the	the	DT
cord-345211-4ivqlsgt	197	10	major	major	JJ
cord-345211-4ivqlsgt	197	11	advance	advance	NN
cord-345211-4ivqlsgt	197	12	in	in	IN
cord-345211-4ivqlsgt	197	13	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	197	14	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	197	15	over	over	IN
cord-345211-4ivqlsgt	197	16	recent	recent	JJ
cord-345211-4ivqlsgt	197	17	years	year	NNS
cord-345211-4ivqlsgt	197	18	.	.	.
cord-345211-4ivqlsgt	198	1	•	•	NNP
cord-345211-4ivqlsgt	198	2	Although	although	IN
cord-345211-4ivqlsgt	198	3	uptake	uptake	NN
cord-345211-4ivqlsgt	198	4	has	have	VBZ
cord-345211-4ivqlsgt	198	5	been	be	VBN
cord-345211-4ivqlsgt	198	6	relatively	relatively	RB
cord-345211-4ivqlsgt	198	7	slow	slow	JJ
cord-345211-4ivqlsgt	198	8	,	,	,
cord-345211-4ivqlsgt	198	9	NATs	NATs	NNP
cord-345211-4ivqlsgt	198	10	now	now	RB
cord-345211-4ivqlsgt	198	11	have	have	VBP
cord-345211-4ivqlsgt	198	12	established	establish	VBN
cord-345211-4ivqlsgt	198	13	roles	role	NNS
cord-345211-4ivqlsgt	198	14	(	(	-LRB-
cord-345211-4ivqlsgt	198	15	often	often	RB
cord-345211-4ivqlsgt	198	16	as	as	IN
cord-345211-4ivqlsgt	198	17	the	the	DT
cord-345211-4ivqlsgt	198	18	diagnostic	diagnostic	NN
cord-345211-4ivqlsgt	198	19	of	of	IN
cord-345211-4ivqlsgt	198	20	choice	choice	NN
cord-345211-4ivqlsgt	198	21	)	)	-RRB-
cord-345211-4ivqlsgt	198	22	for	for	IN
cord-345211-4ivqlsgt	198	23	the	the	DT
cord-345211-4ivqlsgt	198	24	detection	detection	NN
cord-345211-4ivqlsgt	198	25	of	of	IN
cord-345211-4ivqlsgt	198	26	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	198	27	viruses	virus	NNS
cord-345211-4ivqlsgt	198	28	and	and	CC
cord-345211-4ivqlsgt	198	29	several	several	JJ
cord-345211-4ivqlsgt	198	30	non	non	JJ
cord-345211-4ivqlsgt	198	31	-	-	JJ
cord-345211-4ivqlsgt	198	32	colonizing	colonizing	JJ
cord-345211-4ivqlsgt	198	33	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	198	34	(	(	-LRB-
cord-345211-4ivqlsgt	198	35	e.g.	e.g.	RB
cord-345211-4ivqlsgt	198	36	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	198	37	species	specie	NNS
cord-345211-4ivqlsgt	198	38	)	)	-RRB-
cord-345211-4ivqlsgt	198	39	.	.	.
cord-345211-4ivqlsgt	199	1	In	in	IN
cord-345211-4ivqlsgt	199	2	contrast	contrast	NN
cord-345211-4ivqlsgt	199	3	,	,	,
cord-345211-4ivqlsgt	199	4	NATs	NATs	NNP
cord-345211-4ivqlsgt	199	5	have	have	VBP
cord-345211-4ivqlsgt	199	6	yet	yet	RB
cord-345211-4ivqlsgt	199	7	to	to	TO
cord-345211-4ivqlsgt	199	8	have	have	VB
cord-345211-4ivqlsgt	199	9	an	an	DT
cord-345211-4ivqlsgt	199	10	established	establish	VBN
cord-345211-4ivqlsgt	199	11	role	role	NN
cord-345211-4ivqlsgt	199	12	for	for	IN
cord-345211-4ivqlsgt	199	13	several	several	JJ
cord-345211-4ivqlsgt	199	14	important	important	JJ
cord-345211-4ivqlsgt	199	15	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	199	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	199	17	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	199	18	(	(	-LRB-
cord-345211-4ivqlsgt	199	19	e.g.	e.g.	RB
cord-345211-4ivqlsgt	199	20	S.	S.	NNP
cord-345211-4ivqlsgt	199	21	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	199	22	)	)	-RRB-
cord-345211-4ivqlsgt	199	23	that	that	WDT
cord-345211-4ivqlsgt	199	24	also	also	RB
cord-345211-4ivqlsgt	199	25	are	be	VBP
cord-345211-4ivqlsgt	199	26	asymptomatic	asymptomatic	JJ
cord-345211-4ivqlsgt	199	27	colonizers	colonizer	NNS
cord-345211-4ivqlsgt	199	28	of	of	IN
cord-345211-4ivqlsgt	199	29	the	the	DT
cord-345211-4ivqlsgt	199	30	upper	upper	JJ
cord-345211-4ivqlsgt	199	31	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	199	32	tract	tract	NN
cord-345211-4ivqlsgt	199	33	.	.	.
cord-345211-4ivqlsgt	200	1	•	•	NNP
cord-345211-4ivqlsgt	201	1	Further	further	JJ
cord-345211-4ivqlsgt	201	2	developments	development	NNS
cord-345211-4ivqlsgt	201	3	in	in	IN
cord-345211-4ivqlsgt	201	4	molecular	molecular	JJ
cord-345211-4ivqlsgt	201	5	tests	test	NNS
cord-345211-4ivqlsgt	201	6	need	need	VBP
cord-345211-4ivqlsgt	201	7	to	to	TO
cord-345211-4ivqlsgt	201	8	focus	focus	VB
cord-345211-4ivqlsgt	201	9	on	on	IN
cord-345211-4ivqlsgt	201	10	methods	method	NNS
cord-345211-4ivqlsgt	201	11	to	to	TO
cord-345211-4ivqlsgt	201	12	help	help	VB
cord-345211-4ivqlsgt	201	13	interpret	interpret	VB
cord-345211-4ivqlsgt	201	14	the	the	DT
cord-345211-4ivqlsgt	201	15	significance	significance	NN
cord-345211-4ivqlsgt	201	16	of	of	IN
cord-345211-4ivqlsgt	201	17	positive	positive	JJ
cord-345211-4ivqlsgt	201	18	results	result	NNS
cord-345211-4ivqlsgt	201	19	.	.	.
cord-345211-4ivqlsgt	202	1	The	the	DT
cord-345211-4ivqlsgt	202	2	use	use	NN
cord-345211-4ivqlsgt	202	3	of	of	IN
cord-345211-4ivqlsgt	202	4	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	202	5	NATs	nat	NNS
cord-345211-4ivqlsgt	202	6	and	and	CC
cord-345211-4ivqlsgt	202	7	microbial	microbial	JJ
cord-345211-4ivqlsgt	202	8	load	load	NN
cord-345211-4ivqlsgt	202	9	cutoffs	cutoff	NNS
cord-345211-4ivqlsgt	202	10	has	have	VBZ
cord-345211-4ivqlsgt	202	11	shown	show	VBN
cord-345211-4ivqlsgt	202	12	promise	promise	NN
cord-345211-4ivqlsgt	202	13	as	as	IN
cord-345211-4ivqlsgt	202	14	one	one	CD
cord-345211-4ivqlsgt	202	15	means	mean	VBZ
cord-345211-4ivqlsgt	202	16	to	to	TO
cord-345211-4ivqlsgt	202	17	discriminate	discriminate	VB
cord-345211-4ivqlsgt	202	18	between	between	IN
cord-345211-4ivqlsgt	202	19	colonizing	colonize	VBG
cord-345211-4ivqlsgt	202	20	and	and	CC
cord-345211-4ivqlsgt	202	21	pathogenic	pathogenic	JJ
cord-345211-4ivqlsgt	202	22	microorganisms	microorganism	NNS
cord-345211-4ivqlsgt	202	23	.	.	.
cord-345211-4ivqlsgt	203	1	•	•	NNP
cord-345211-4ivqlsgt	204	1	The	the	DT
cord-345211-4ivqlsgt	204	2	recent	recent	JJ
cord-345211-4ivqlsgt	204	3	revelation	revelation	NN
cord-345211-4ivqlsgt	204	4	that	that	IN
cord-345211-4ivqlsgt	204	5	the	the	DT
cord-345211-4ivqlsgt	204	6	lung	lung	NN
cord-345211-4ivqlsgt	204	7	microbiome	microbiome	NN
cord-345211-4ivqlsgt	204	8	exists	exist	VBZ
cord-345211-4ivqlsgt	204	9	and	and	CC
cord-345211-4ivqlsgt	204	10	new	new	JJ
cord-345211-4ivqlsgt	204	11	knowledge	knowledge	NN
cord-345211-4ivqlsgt	204	12	about	about	IN
cord-345211-4ivqlsgt	204	13	the	the	DT
cord-345211-4ivqlsgt	204	14	interaction	interaction	NN
cord-345211-4ivqlsgt	204	15	between	between	IN
cord-345211-4ivqlsgt	204	16	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	204	17	and	and	CC
cord-345211-4ivqlsgt	204	18	viruses	virus	NNS
cord-345211-4ivqlsgt	204	19	has	have	VBZ
cord-345211-4ivqlsgt	204	20	changed	change	VBN
cord-345211-4ivqlsgt	204	21	the	the	DT
cord-345211-4ivqlsgt	204	22	traditional	traditional	JJ
cord-345211-4ivqlsgt	204	23	view	view	NN
cord-345211-4ivqlsgt	204	24	of	of	IN
cord-345211-4ivqlsgt	204	25	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	204	26	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	204	27	.	.	.
cord-345211-4ivqlsgt	205	1	New	new	JJ
cord-345211-4ivqlsgt	205	2	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	205	3	need	need	VBP
cord-345211-4ivqlsgt	205	4	to	to	TO
cord-345211-4ivqlsgt	205	5	account	account	VB
cord-345211-4ivqlsgt	205	6	for	for	IN
cord-345211-4ivqlsgt	205	7	this	this	DT
cord-345211-4ivqlsgt	205	8	new	new	JJ
cord-345211-4ivqlsgt	205	9	paradigm	paradigm	NN
cord-345211-4ivqlsgt	205	10	and	and	CC
cord-345211-4ivqlsgt	205	11	be	be	VB
cord-345211-4ivqlsgt	205	12	less	less	RBR
cord-345211-4ivqlsgt	205	13	focused	focused	JJ
cord-345211-4ivqlsgt	205	14	on	on	IN
cord-345211-4ivqlsgt	205	15	just	just	RB
cord-345211-4ivqlsgt	205	16	detecting	detect	VBG
cord-345211-4ivqlsgt	205	17	specific	specific	JJ
cord-345211-4ivqlsgt	205	18	known	know	VBN
cord-345211-4ivqlsgt	205	19	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	205	20	.	.	.
cord-345211-4ivqlsgt	206	1	Global	global	JJ
cord-345211-4ivqlsgt	206	2	,	,	,
cord-345211-4ivqlsgt	206	3	regional	regional	JJ
cord-345211-4ivqlsgt	206	4	,	,	,
cord-345211-4ivqlsgt	206	5	and	and	CC
cord-345211-4ivqlsgt	206	6	national	national	JJ
cord-345211-4ivqlsgt	206	7	incidence	incidence	NN
cord-345211-4ivqlsgt	206	8	,	,	,
cord-345211-4ivqlsgt	206	9	prevalence	prevalence	NN
cord-345211-4ivqlsgt	206	10	,	,	,
cord-345211-4ivqlsgt	206	11	and	and	CC
cord-345211-4ivqlsgt	206	12	years	year	NNS
cord-345211-4ivqlsgt	206	13	lived	live	VBD
cord-345211-4ivqlsgt	206	14	with	with	IN
cord-345211-4ivqlsgt	206	15	disability	disability	NN
cord-345211-4ivqlsgt	206	16	for	for	IN
cord-345211-4ivqlsgt	206	17	301	301	CD
cord-345211-4ivqlsgt	206	18	acute	acute	JJ
cord-345211-4ivqlsgt	206	19	and	and	CC
cord-345211-4ivqlsgt	206	20	chronic	chronic	JJ
cord-345211-4ivqlsgt	206	21	diseases	disease	NNS
cord-345211-4ivqlsgt	206	22	and	and	CC
cord-345211-4ivqlsgt	206	23	injuries	injury	NNS
cord-345211-4ivqlsgt	206	24	in	in	IN
cord-345211-4ivqlsgt	206	25	188	188	CD
cord-345211-4ivqlsgt	206	26	countries	country	NNS
cord-345211-4ivqlsgt	206	27	,	,	,
cord-345211-4ivqlsgt	206	28	1990	1990	CD
cord-345211-4ivqlsgt	206	29	-	-	SYM
cord-345211-4ivqlsgt	206	30	2013	2013	CD
cord-345211-4ivqlsgt	206	31	:	:	:
cord-345211-4ivqlsgt	206	32	a	a	DT
cord-345211-4ivqlsgt	206	33	systematic	systematic	JJ
cord-345211-4ivqlsgt	206	34	analysis	analysis	NN
cord-345211-4ivqlsgt	206	35	for	for	IN
cord-345211-4ivqlsgt	206	36	the	the	DT
cord-345211-4ivqlsgt	206	37	global	global	JJ
cord-345211-4ivqlsgt	206	38	burden	burden	NN
cord-345211-4ivqlsgt	206	39	of	of	IN
cord-345211-4ivqlsgt	206	40	disease	disease	NN
cord-345211-4ivqlsgt	206	41	study	study	NN
cord-345211-4ivqlsgt	206	42	2013	2013	CD
cord-345211-4ivqlsgt	206	43	Global	global	JJ
cord-345211-4ivqlsgt	206	44	burden	burden	NN
cord-345211-4ivqlsgt	206	45	of	of	IN
cord-345211-4ivqlsgt	206	46	childhood	childhood	NN
cord-345211-4ivqlsgt	206	47	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	206	48	and	and	CC
cord-345211-4ivqlsgt	206	49	diarrhoea	diarrhoea	NN
cord-345211-4ivqlsgt	207	1	Community	community	NN
cord-345211-4ivqlsgt	207	2	-	-	HYPH
cord-345211-4ivqlsgt	207	3	acquired	acquire	VBN
cord-345211-4ivqlsgt	207	4	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	207	5	Breathing	breathe	VBG
cord-345211-4ivqlsgt	207	6	new	new	JJ
cord-345211-4ivqlsgt	207	7	life	life	NN
cord-345211-4ivqlsgt	207	8	into	into	IN
cord-345211-4ivqlsgt	207	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	207	10	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	208	1	This	this	DT
cord-345211-4ivqlsgt	208	2	commentary	commentary	NN
cord-345211-4ivqlsgt	208	3	summarizes	summarize	VBZ
cord-345211-4ivqlsgt	208	4	some	some	DT
cord-345211-4ivqlsgt	208	5	of	of	IN
cord-345211-4ivqlsgt	208	6	the	the	DT
cord-345211-4ivqlsgt	208	7	key	key	JJ
cord-345211-4ivqlsgt	208	8	challenges	challenge	NNS
cord-345211-4ivqlsgt	208	9	in	in	IN
cord-345211-4ivqlsgt	208	10	determining	determine	VBG
cord-345211-4ivqlsgt	208	11	the	the	DT
cord-345211-4ivqlsgt	208	12	microbial	microbial	JJ
cord-345211-4ivqlsgt	208	13	etiology	etiology	NN
cord-345211-4ivqlsgt	208	14	of	of	IN
cord-345211-4ivqlsgt	208	15	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	208	16	Laboratory	laboratory	NN
cord-345211-4ivqlsgt	208	17	methods	method	NNS
cord-345211-4ivqlsgt	208	18	for	for	IN
cord-345211-4ivqlsgt	208	19	determining	determine	VBG
cord-345211-4ivqlsgt	208	20	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	208	21	etiology	etiology	NN
cord-345211-4ivqlsgt	208	22	in	in	IN
cord-345211-4ivqlsgt	208	23	children	child	NNS
cord-345211-4ivqlsgt	208	24	Vaccine	vaccine	NN
cord-345211-4ivqlsgt	208	25	effects	effect	NNS
cord-345211-4ivqlsgt	208	26	and	and	CC
cord-345211-4ivqlsgt	208	27	impact	impact	NN
cord-345211-4ivqlsgt	208	28	of	of	IN
cord-345211-4ivqlsgt	208	29	vaccination	vaccination	NN
cord-345211-4ivqlsgt	208	30	programmes	programme	NNS
cord-345211-4ivqlsgt	208	31	in	in	IN
cord-345211-4ivqlsgt	208	32	post	post	JJ
cord-345211-4ivqlsgt	208	33	-	-	JJ
cord-345211-4ivqlsgt	208	34	licensure	licensure	JJ
cord-345211-4ivqlsgt	208	35	studies	study	NNS
cord-345211-4ivqlsgt	209	1	Transthoracic	Transthoracic	NNP
cord-345211-4ivqlsgt	209	2	lung	lung	NN
cord-345211-4ivqlsgt	209	3	aspiration	aspiration	NN
cord-345211-4ivqlsgt	209	4	for	for	IN
cord-345211-4ivqlsgt	209	5	the	the	DT
cord-345211-4ivqlsgt	209	6	aetiological	aetiological	JJ
cord-345211-4ivqlsgt	209	7	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	209	8	of	of	IN
cord-345211-4ivqlsgt	209	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	209	10	:	:	:
cord-345211-4ivqlsgt	210	1	25	25	CD
cord-345211-4ivqlsgt	210	2	years	year	NNS
cord-345211-4ivqlsgt	210	3	of	of	IN
cord-345211-4ivqlsgt	210	4	experience	experience	NN
cord-345211-4ivqlsgt	210	5	from	from	IN
cord-345211-4ivqlsgt	210	6	The	the	DT
cord-345211-4ivqlsgt	210	7	Gambia	Gambia	NNP
cord-345211-4ivqlsgt	210	8	BTS	BTS	NNP
cord-345211-4ivqlsgt	210	9	guidelines	guideline	NNS
cord-345211-4ivqlsgt	210	10	for	for	IN
cord-345211-4ivqlsgt	210	11	the	the	DT
cord-345211-4ivqlsgt	210	12	management	management	NN
cord-345211-4ivqlsgt	210	13	of	of	IN
cord-345211-4ivqlsgt	210	14	community	community	NN
cord-345211-4ivqlsgt	210	15	acquired	acquire	VBD
cord-345211-4ivqlsgt	210	16	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	210	17	in	in	IN
cord-345211-4ivqlsgt	210	18	adults	adult	NNS
cord-345211-4ivqlsgt	210	19	:	:	:
cord-345211-4ivqlsgt	210	20	update	update	VB
cord-345211-4ivqlsgt	210	21	Infectious	infectious	JJ
cord-345211-4ivqlsgt	210	22	diseases	disease	NNS
cord-345211-4ivqlsgt	210	23	society	society	NN
cord-345211-4ivqlsgt	210	24	of	of	IN
cord-345211-4ivqlsgt	210	25	America	America	NNP
cord-345211-4ivqlsgt	210	26	/	/	SYM
cord-345211-4ivqlsgt	210	27	American	american	JJ
cord-345211-4ivqlsgt	210	28	thoracic	thoracic	JJ
cord-345211-4ivqlsgt	210	29	society	society	NN
cord-345211-4ivqlsgt	210	30	consensus	consensus	NN
cord-345211-4ivqlsgt	210	31	guidelines	guideline	NNS
cord-345211-4ivqlsgt	210	32	on	on	IN
cord-345211-4ivqlsgt	210	33	the	the	DT
cord-345211-4ivqlsgt	210	34	management	management	NN
cord-345211-4ivqlsgt	210	35	of	of	IN
cord-345211-4ivqlsgt	210	36	community	community	NN
cord-345211-4ivqlsgt	210	37	-	-	HYPH
cord-345211-4ivqlsgt	210	38	acquired	acquire	VBN
cord-345211-4ivqlsgt	210	39	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	210	40	in	in	IN
cord-345211-4ivqlsgt	210	41	adults	adult	NNS
cord-345211-4ivqlsgt	210	42	Pneumonia	Pneumonia	NNP
cord-345211-4ivqlsgt	210	43	in	in	IN
cord-345211-4ivqlsgt	210	44	adults	adult	NNS
cord-345211-4ivqlsgt	210	45	:	:	:
cord-345211-4ivqlsgt	210	46	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	210	47	and	and	CC
cord-345211-4ivqlsgt	210	48	management	management	NN
cord-345211-4ivqlsgt	210	49	.	.	.
cord-345211-4ivqlsgt	211	1	Manchester	Manchester	NNP
cord-345211-4ivqlsgt	211	2	:	:	:
cord-345211-4ivqlsgt	212	1	National	National	NNP
cord-345211-4ivqlsgt	212	2	Institute	Institute	NNP
cord-345211-4ivqlsgt	212	3	for	for	IN
cord-345211-4ivqlsgt	212	4	Health	Health	NNP
cord-345211-4ivqlsgt	212	5	and	and	CC
cord-345211-4ivqlsgt	212	6	Care	Care	NNP
cord-345211-4ivqlsgt	212	7	Excellence	Excellence	NNP
cord-345211-4ivqlsgt	213	1	The	the	DT
cord-345211-4ivqlsgt	213	2	management	management	NN
cord-345211-4ivqlsgt	213	3	of	of	IN
cord-345211-4ivqlsgt	213	4	community	community	NN
cord-345211-4ivqlsgt	213	5	-	-	HYPH
cord-345211-4ivqlsgt	213	6	acquired	acquire	VBN
cord-345211-4ivqlsgt	213	7	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	213	8	in	in	IN
cord-345211-4ivqlsgt	213	9	infants	infant	NNS
cord-345211-4ivqlsgt	213	10	and	and	CC
cord-345211-4ivqlsgt	213	11	children	child	NNS
cord-345211-4ivqlsgt	213	12	older	old	JJR
cord-345211-4ivqlsgt	213	13	than	than	IN
cord-345211-4ivqlsgt	213	14	3	3	CD
cord-345211-4ivqlsgt	213	15	months	month	NNS
cord-345211-4ivqlsgt	213	16	of	of	IN
cord-345211-4ivqlsgt	213	17	age	age	NN
cord-345211-4ivqlsgt	213	18	:	:	:
cord-345211-4ivqlsgt	213	19	clinical	clinical	JJ
cord-345211-4ivqlsgt	213	20	practice	practice	NN
cord-345211-4ivqlsgt	213	21	guidelines	guideline	NNS
cord-345211-4ivqlsgt	213	22	by	by	IN
cord-345211-4ivqlsgt	213	23	the	the	DT
cord-345211-4ivqlsgt	213	24	Pediatric	pediatric	JJ
cord-345211-4ivqlsgt	213	25	infectious	infectious	JJ
cord-345211-4ivqlsgt	213	26	diseases	disease	NNS
cord-345211-4ivqlsgt	213	27	society	society	NN
cord-345211-4ivqlsgt	213	28	and	and	CC
cord-345211-4ivqlsgt	213	29	the	the	DT
cord-345211-4ivqlsgt	213	30	infectious	infectious	JJ
cord-345211-4ivqlsgt	213	31	diseases	disease	NNS
cord-345211-4ivqlsgt	213	32	society	society	NN
cord-345211-4ivqlsgt	213	33	of	of	IN
cord-345211-4ivqlsgt	213	34	America	America	NNP
cord-345211-4ivqlsgt	213	35	British	British	NNP
cord-345211-4ivqlsgt	213	36	Thoracic	Thoracic	NNP
cord-345211-4ivqlsgt	213	37	Society	Society	NNP
cord-345211-4ivqlsgt	213	38	guidelines	guideline	NNS
cord-345211-4ivqlsgt	213	39	for	for	IN
cord-345211-4ivqlsgt	213	40	the	the	DT
cord-345211-4ivqlsgt	213	41	management	management	NN
cord-345211-4ivqlsgt	213	42	of	of	IN
cord-345211-4ivqlsgt	213	43	community	community	NN
cord-345211-4ivqlsgt	213	44	acquired	acquire	VBD
cord-345211-4ivqlsgt	213	45	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	213	46	in	in	IN
cord-345211-4ivqlsgt	213	47	children	child	NNS
cord-345211-4ivqlsgt	213	48	:	:	:
cord-345211-4ivqlsgt	213	49	update	update	VB
cord-345211-4ivqlsgt	213	50	Rapid	Rapid	NNP
cord-345211-4ivqlsgt	213	51	identification	identification	NN
cord-345211-4ivqlsgt	213	52	of	of	IN
cord-345211-4ivqlsgt	213	53	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	213	54	using	use	VBG
cord-345211-4ivqlsgt	213	55	molecular	molecular	JJ
cord-345211-4ivqlsgt	213	56	techniques	technique	NNS
cord-345211-4ivqlsgt	213	57	Development	development	NN
cord-345211-4ivqlsgt	213	58	and	and	CC
cord-345211-4ivqlsgt	213	59	deployment	deployment	NN
cord-345211-4ivqlsgt	213	60	of	of	IN
cord-345211-4ivqlsgt	213	61	a	a	DT
cord-345211-4ivqlsgt	213	62	rapid	rapid	JJ
cord-345211-4ivqlsgt	213	63	recombinase	recombinase	NN
cord-345211-4ivqlsgt	213	64	polymerase	polymerase	NN
cord-345211-4ivqlsgt	213	65	amplification	amplification	NN
cord-345211-4ivqlsgt	213	66	Ebola	Ebola	NNP
cord-345211-4ivqlsgt	213	67	virus	virus	NN
cord-345211-4ivqlsgt	213	68	detection	detection	NN
cord-345211-4ivqlsgt	213	69	assay	assay	NN
cord-345211-4ivqlsgt	213	70	in	in	IN
cord-345211-4ivqlsgt	213	71	Guinea	Guinea	NNP
cord-345211-4ivqlsgt	213	72	in	in	IN
cord-345211-4ivqlsgt	213	73	2015	2015	CD
cord-345211-4ivqlsgt	213	74	Update	update	NN
cord-345211-4ivqlsgt	213	75	on	on	IN
cord-345211-4ivqlsgt	213	76	influenza	influenza	NN
cord-345211-4ivqlsgt	213	77	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	213	78	:	:	:
cord-345211-4ivqlsgt	214	1	lessons	lesson	NNS
cord-345211-4ivqlsgt	214	2	from	from	IN
cord-345211-4ivqlsgt	214	3	the	the	DT
cord-345211-4ivqlsgt	214	4	novel	novel	NN
cord-345211-4ivqlsgt	215	1	H1N1	H1N1	NNP
cord-345211-4ivqlsgt	215	2	influenza	influenza	NN
cord-345211-4ivqlsgt	215	3	A	a	DT
cord-345211-4ivqlsgt	215	4	pandemic	pandemic	NN
cord-345211-4ivqlsgt	215	5	MERS	MERS	NNP
cord-345211-4ivqlsgt	215	6	coronavirus	coronavirus	NN
cord-345211-4ivqlsgt	215	7	:	:	:
cord-345211-4ivqlsgt	215	8	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	215	9	,	,	,
cord-345211-4ivqlsgt	215	10	epidemiology	epidemiology	NN
cord-345211-4ivqlsgt	215	11	and	and	CC
cord-345211-4ivqlsgt	215	12	transmission	transmission	NN
cord-345211-4ivqlsgt	216	1	Nucleic	nucleic	JJ
cord-345211-4ivqlsgt	216	2	acid	acid	NN
cord-345211-4ivqlsgt	216	3	amplification	amplification	NN
cord-345211-4ivqlsgt	216	4	tests	test	NNS
cord-345211-4ivqlsgt	216	5	for	for	IN
cord-345211-4ivqlsgt	216	6	the	the	DT
cord-345211-4ivqlsgt	216	7	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	216	8	of	of	IN
cord-345211-4ivqlsgt	216	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	216	10	Molecular	molecular	JJ
cord-345211-4ivqlsgt	216	11	genetic	genetic	JJ
cord-345211-4ivqlsgt	216	12	methods	method	NNS
cord-345211-4ivqlsgt	216	13	in	in	IN
cord-345211-4ivqlsgt	216	14	the	the	DT
cord-345211-4ivqlsgt	216	15	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	216	16	of	of	IN
cord-345211-4ivqlsgt	216	17	lower	low	JJR
cord-345211-4ivqlsgt	216	18	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	19	tract	tract	NN
cord-345211-4ivqlsgt	216	20	infections	infection	NNS
cord-345211-4ivqlsgt	216	21	Molecular	molecular	JJ
cord-345211-4ivqlsgt	216	22	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	216	23	of	of	IN
cord-345211-4ivqlsgt	216	24	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	25	viruses	virus	NNS
cord-345211-4ivqlsgt	216	26	Nucleic	nucleic	IN
cord-345211-4ivqlsgt	216	27	acid	acid	NN
cord-345211-4ivqlsgt	216	28	amplification	amplification	NN
cord-345211-4ivqlsgt	216	29	-	-	HYPH
cord-345211-4ivqlsgt	216	30	based	base	VBN
cord-345211-4ivqlsgt	216	31	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	216	32	of	of	IN
cord-345211-4ivqlsgt	216	33	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	34	virus	virus	NN
cord-345211-4ivqlsgt	216	35	infections	infection	NNS
cord-345211-4ivqlsgt	216	36	Viral	viral	JJ
cord-345211-4ivqlsgt	216	37	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	216	38	Viral	viral	JJ
cord-345211-4ivqlsgt	216	39	infections	infection	NNS
cord-345211-4ivqlsgt	216	40	of	of	IN
cord-345211-4ivqlsgt	216	41	the	the	DT
cord-345211-4ivqlsgt	216	42	lower	low	JJR
cord-345211-4ivqlsgt	216	43	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	44	tract	tract	NN
cord-345211-4ivqlsgt	216	45	:	:	:
cord-345211-4ivqlsgt	216	46	old	old	JJ
cord-345211-4ivqlsgt	216	47	viruses	virus	NNS
cord-345211-4ivqlsgt	216	48	,	,	,
cord-345211-4ivqlsgt	216	49	new	new	JJ
cord-345211-4ivqlsgt	216	50	viruses	virus	NNS
cord-345211-4ivqlsgt	216	51	,	,	,
cord-345211-4ivqlsgt	216	52	and	and	CC
cord-345211-4ivqlsgt	216	53	the	the	DT
cord-345211-4ivqlsgt	216	54	role	role	NN
cord-345211-4ivqlsgt	216	55	of	of	IN
cord-345211-4ivqlsgt	216	56	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	216	57	Point	point	NN
cord-345211-4ivqlsgt	216	58	-	-	HYPH
cord-345211-4ivqlsgt	216	59	counterpoint	counterpoint	NN
cord-345211-4ivqlsgt	216	60	:	:	:
cord-345211-4ivqlsgt	216	61	large	large	JJ
cord-345211-4ivqlsgt	216	62	multiplex	multiplex	NN
cord-345211-4ivqlsgt	216	63	PCR	pcr	NN
cord-345211-4ivqlsgt	216	64	panels	panel	NNS
cord-345211-4ivqlsgt	216	65	should	should	MD
cord-345211-4ivqlsgt	216	66	be	be	VB
cord-345211-4ivqlsgt	216	67	first	first	JJ
cord-345211-4ivqlsgt	216	68	-	-	HYPH
cord-345211-4ivqlsgt	216	69	line	line	NN
cord-345211-4ivqlsgt	216	70	tests	test	NNS
cord-345211-4ivqlsgt	216	71	for	for	IN
cord-345211-4ivqlsgt	216	72	detection	detection	NN
cord-345211-4ivqlsgt	216	73	of	of	IN
cord-345211-4ivqlsgt	216	74	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	75	and	and	CC
cord-345211-4ivqlsgt	216	76	intestinal	intestinal	JJ
cord-345211-4ivqlsgt	216	77	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	216	78	A	a	DT
cord-345211-4ivqlsgt	216	79	preliminary	preliminary	JJ
cord-345211-4ivqlsgt	216	80	study	study	NN
cord-345211-4ivqlsgt	216	81	of	of	IN
cord-345211-4ivqlsgt	216	82	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	216	83	etiology	etiology	NN
cord-345211-4ivqlsgt	216	84	among	among	IN
cord-345211-4ivqlsgt	216	85	hospitalized	hospitalize	VBN
cord-345211-4ivqlsgt	216	86	children	child	NNS
cord-345211-4ivqlsgt	216	87	in	in	IN
cord-345211-4ivqlsgt	216	88	Kenya	Kenya	NNP
cord-345211-4ivqlsgt	216	89	Respiratory	respiratory	JJ
cord-345211-4ivqlsgt	216	90	viruses	virus	NNS
cord-345211-4ivqlsgt	216	91	associated	associate	VBN
cord-345211-4ivqlsgt	216	92	with	with	IN
cord-345211-4ivqlsgt	216	93	community	community	NN
cord-345211-4ivqlsgt	216	94	-	-	HYPH
cord-345211-4ivqlsgt	216	95	acquired	acquire	VBN
cord-345211-4ivqlsgt	216	96	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	216	97	in	in	IN
cord-345211-4ivqlsgt	216	98	children	child	NNS
cord-345211-4ivqlsgt	216	99	:	:	:
cord-345211-4ivqlsgt	216	100	matched	match	VBN
cord-345211-4ivqlsgt	216	101	case	case	NN
cord-345211-4ivqlsgt	216	102	-	-	HYPH
cord-345211-4ivqlsgt	216	103	control	control	NN
cord-345211-4ivqlsgt	216	104	study	study	NN
cord-345211-4ivqlsgt	217	1	This	this	DT
cord-345211-4ivqlsgt	217	2	recent	recent	JJ
cord-345211-4ivqlsgt	217	3	case	case	NN
cord-345211-4ivqlsgt	217	4	-	-	HYPH
cord-345211-4ivqlsgt	217	5	control	control	NN
cord-345211-4ivqlsgt	217	6	study	study	NN
cord-345211-4ivqlsgt	217	7	highlights	highlight	VBZ
cord-345211-4ivqlsgt	217	8	the	the	DT
cord-345211-4ivqlsgt	217	9	relatively	relatively	RB
cord-345211-4ivqlsgt	217	10	high	high	JJ
cord-345211-4ivqlsgt	217	11	prevalence	prevalence	NN
cord-345211-4ivqlsgt	217	12	of	of	IN
cord-345211-4ivqlsgt	217	13	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	217	14	virus	virus	NN
cord-345211-4ivqlsgt	217	15	detection	detection	NN
cord-345211-4ivqlsgt	217	16	among	among	IN
cord-345211-4ivqlsgt	217	17	community	community	NN
cord-345211-4ivqlsgt	217	18	controls	control	NNS
cord-345211-4ivqlsgt	217	19	and	and	CC
cord-345211-4ivqlsgt	217	20	some	some	DT
cord-345211-4ivqlsgt	217	21	of	of	IN
cord-345211-4ivqlsgt	217	22	the	the	DT
cord-345211-4ivqlsgt	217	23	challenges	challenge	NNS
cord-345211-4ivqlsgt	217	24	with	with	IN
cord-345211-4ivqlsgt	217	25	interpretation	interpretation	NN
cord-345211-4ivqlsgt	217	26	of	of	IN
cord-345211-4ivqlsgt	217	27	positive	positive	JJ
cord-345211-4ivqlsgt	217	28	PCR	PCR	NNP
cord-345211-4ivqlsgt	217	29	results	result	NNS
cord-345211-4ivqlsgt	217	30	in	in	IN
cord-345211-4ivqlsgt	217	31	children	child	NNS
cord-345211-4ivqlsgt	217	32	with	with	IN
cord-345211-4ivqlsgt	217	33	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	217	34	Epidemiology	epidemiology	NN
cord-345211-4ivqlsgt	217	35	and	and	CC
cord-345211-4ivqlsgt	217	36	clinical	clinical	JJ
cord-345211-4ivqlsgt	217	37	management	management	NN
cord-345211-4ivqlsgt	217	38	of	of	IN
cord-345211-4ivqlsgt	217	39	Legionnaires	Legionnaires	NNPS
cord-345211-4ivqlsgt	217	40	'	'	POS
cord-345211-4ivqlsgt	217	41	disease	disease	NN
cord-345211-4ivqlsgt	217	42	Current	Current	NNP
cord-345211-4ivqlsgt	217	43	and	and	CC
cord-345211-4ivqlsgt	217	44	emerging	emerge	VBG
cord-345211-4ivqlsgt	217	45	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	217	46	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	217	47	for	for	IN
cord-345211-4ivqlsgt	217	48	laboratory	laboratory	NN
cord-345211-4ivqlsgt	217	49	and	and	CC
cord-345211-4ivqlsgt	217	50	outbreak	outbreak	NN
cord-345211-4ivqlsgt	217	51	investigations	investigation	NNS
cord-345211-4ivqlsgt	218	1	Environmental	environmental	JJ
cord-345211-4ivqlsgt	218	2	legionellosis	legionellosis	NN
cord-345211-4ivqlsgt	218	3	and	and	CC
cord-345211-4ivqlsgt	218	4	oropharyngeal	oropharyngeal	JJ
cord-345211-4ivqlsgt	218	5	colonization	colonization	NN
cord-345211-4ivqlsgt	218	6	by	by	IN
cord-345211-4ivqlsgt	218	7	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	218	8	in	in	IN
cord-345211-4ivqlsgt	218	9	immunosuppressed	immunosuppressed	JJ
cord-345211-4ivqlsgt	218	10	patients	patient	NNS
cord-345211-4ivqlsgt	218	11	Utility	Utility	NNP
cord-345211-4ivqlsgt	218	12	of	of	IN
cord-345211-4ivqlsgt	218	13	real	real	JJ
cord-345211-4ivqlsgt	218	14	-	-	HYPH
cord-345211-4ivqlsgt	218	15	time	time	NN
cord-345211-4ivqlsgt	218	16	PCR	PCR	NNP
cord-345211-4ivqlsgt	218	17	for	for	IN
cord-345211-4ivqlsgt	218	18	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	218	19	of	of	IN
cord-345211-4ivqlsgt	218	20	legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	218	21	'	'	POS
cord-345211-4ivqlsgt	218	22	disease	disease	NN
cord-345211-4ivqlsgt	218	23	in	in	IN
cord-345211-4ivqlsgt	218	24	routine	routine	JJ
cord-345211-4ivqlsgt	218	25	clinical	clinical	JJ
cord-345211-4ivqlsgt	218	26	practice	practice	NN
cord-345211-4ivqlsgt	218	27	Detection	Detection	NNP
cord-345211-4ivqlsgt	218	28	of	of	IN
cord-345211-4ivqlsgt	218	29	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	218	30	DNA	DNA	NNP
cord-345211-4ivqlsgt	218	31	in	in	IN
cord-345211-4ivqlsgt	218	32	peripheral	peripheral	JJ
cord-345211-4ivqlsgt	218	33	leukocytes	leukocyte	NNS
cord-345211-4ivqlsgt	218	34	,	,	,
cord-345211-4ivqlsgt	218	35	serum	serum	NN
cord-345211-4ivqlsgt	218	36	,	,	,
cord-345211-4ivqlsgt	218	37	and	and	CC
cord-345211-4ivqlsgt	218	38	urine	urine	NN
cord-345211-4ivqlsgt	218	39	from	from	IN
cord-345211-4ivqlsgt	218	40	a	a	DT
cord-345211-4ivqlsgt	218	41	patient	patient	NN
cord-345211-4ivqlsgt	218	42	with	with	IN
cord-345211-4ivqlsgt	218	43	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	218	44	caused	cause	VBN
cord-345211-4ivqlsgt	218	45	by	by	IN
cord-345211-4ivqlsgt	218	46	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	218	47	dumoffii	dumoffii	NNP
cord-345211-4ivqlsgt	218	48	Impact	Impact	NNP
cord-345211-4ivqlsgt	218	49	of	of	IN
cord-345211-4ivqlsgt	218	50	routine	routine	JJ
cord-345211-4ivqlsgt	218	51	systematic	systematic	JJ
cord-345211-4ivqlsgt	218	52	polymerase	polymerase	NN
cord-345211-4ivqlsgt	218	53	chain	chain	NN
cord-345211-4ivqlsgt	218	54	reaction	reaction	NN
cord-345211-4ivqlsgt	218	55	testing	testing	NN
cord-345211-4ivqlsgt	218	56	on	on	IN
cord-345211-4ivqlsgt	218	57	case	case	NN
cord-345211-4ivqlsgt	218	58	finding	find	VBG
cord-345211-4ivqlsgt	218	59	for	for	IN
cord-345211-4ivqlsgt	218	60	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	218	61	'	'	POS
cord-345211-4ivqlsgt	218	62	disease	disease	NN
cord-345211-4ivqlsgt	219	1	:	:	:
cord-345211-4ivqlsgt	219	2	a	a	DT
cord-345211-4ivqlsgt	219	3	pre	pre	JJ
cord-345211-4ivqlsgt	219	4	-	-	JJ
cord-345211-4ivqlsgt	219	5	post	post	JJ
cord-345211-4ivqlsgt	219	6	comparison	comparison	NN
cord-345211-4ivqlsgt	219	7	study	study	NN
cord-345211-4ivqlsgt	220	1	This	this	DT
cord-345211-4ivqlsgt	220	2	study	study	NN
cord-345211-4ivqlsgt	220	3	illustrates	illustrate	VBZ
cord-345211-4ivqlsgt	220	4	a	a	DT
cord-345211-4ivqlsgt	220	5	pragmatic	pragmatic	JJ
cord-345211-4ivqlsgt	220	6	application	application	NN
cord-345211-4ivqlsgt	220	7	of	of	IN
cord-345211-4ivqlsgt	220	8	PCR	PCR	NNP
cord-345211-4ivqlsgt	220	9	for	for	IN
cord-345211-4ivqlsgt	220	10	the	the	DT
cord-345211-4ivqlsgt	220	11	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	220	12	of	of	IN
cord-345211-4ivqlsgt	220	13	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	220	14	'	'	POS
cord-345211-4ivqlsgt	220	15	disease	disease	NN
cord-345211-4ivqlsgt	220	16	Use	use	NN
cord-345211-4ivqlsgt	220	17	of	of	IN
cord-345211-4ivqlsgt	220	18	the	the	DT
cord-345211-4ivqlsgt	220	19	polymerase	polymerase	NN
cord-345211-4ivqlsgt	220	20	chain	chain	NN
cord-345211-4ivqlsgt	220	21	reaction	reaction	NN
cord-345211-4ivqlsgt	220	22	to	to	TO
cord-345211-4ivqlsgt	220	23	detect	detect	VB
cord-345211-4ivqlsgt	220	24	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	220	25	DNA	DNA	NNP
cord-345211-4ivqlsgt	220	26	in	in	IN
cord-345211-4ivqlsgt	220	27	urine	urine	NN
cord-345211-4ivqlsgt	220	28	and	and	CC
cord-345211-4ivqlsgt	220	29	serum	serum	NN
cord-345211-4ivqlsgt	220	30	samples	sample	NNS
cord-345211-4ivqlsgt	220	31	from	from	IN
cord-345211-4ivqlsgt	220	32	patients	patient	NNS
cord-345211-4ivqlsgt	220	33	with	with	IN
cord-345211-4ivqlsgt	220	34	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	220	35	Diagnosis	Diagnosis	NNP
cord-345211-4ivqlsgt	220	36	of	of	IN
cord-345211-4ivqlsgt	220	37	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	220	38	pneumophila	pneumophila	NN
cord-345211-4ivqlsgt	220	39	,	,	,
cord-345211-4ivqlsgt	220	40	Mycoplasma	mycoplasma	NN
cord-345211-4ivqlsgt	220	41	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	220	42	,	,	,
cord-345211-4ivqlsgt	220	43	or	or	CC
cord-345211-4ivqlsgt	220	44	Chlamydia	Chlamydia	NNP
cord-345211-4ivqlsgt	220	45	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	220	46	lower	low	JJR
cord-345211-4ivqlsgt	220	47	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	220	48	infection	infection	NN
cord-345211-4ivqlsgt	220	49	using	use	VBG
cord-345211-4ivqlsgt	220	50	the	the	DT
cord-345211-4ivqlsgt	220	51	polymerase	polymerase	NN
cord-345211-4ivqlsgt	220	52	chain	chain	NN
cord-345211-4ivqlsgt	220	53	reaction	reaction	NN
cord-345211-4ivqlsgt	220	54	on	on	IN
cord-345211-4ivqlsgt	220	55	a	a	DT
cord-345211-4ivqlsgt	220	56	single	single	JJ
cord-345211-4ivqlsgt	220	57	throat	throat	NN
cord-345211-4ivqlsgt	220	58	swab	swab	NN
cord-345211-4ivqlsgt	220	59	specimen	specimen	NN
cord-345211-4ivqlsgt	220	60	Sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	220	61	of	of	IN
cord-345211-4ivqlsgt	220	62	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	220	63	pneumophila	pneumophila	NN
cord-345211-4ivqlsgt	220	64	DNA	dna	NN
cord-345211-4ivqlsgt	220	65	detection	detection	NN
cord-345211-4ivqlsgt	220	66	in	in	IN
cord-345211-4ivqlsgt	220	67	serum	serum	NN
cord-345211-4ivqlsgt	220	68	samples	sample	NNS
cord-345211-4ivqlsgt	220	69	in	in	IN
cord-345211-4ivqlsgt	220	70	relation	relation	NN
cord-345211-4ivqlsgt	220	71	to	to	IN
cord-345211-4ivqlsgt	220	72	disease	disease	NN
cord-345211-4ivqlsgt	220	73	severity	severity	NN
cord-345211-4ivqlsgt	221	1	Enhanced	enhanced	JJ
cord-345211-4ivqlsgt	221	2	detection	detection	NN
cord-345211-4ivqlsgt	221	3	of	of	IN
cord-345211-4ivqlsgt	221	4	Legionnaires	legionnaire	NNS
cord-345211-4ivqlsgt	221	5	'	'	POS
cord-345211-4ivqlsgt	221	6	disease	disease	NN
cord-345211-4ivqlsgt	221	7	by	by	IN
cord-345211-4ivqlsgt	221	8	PCR	PCR	NNP
cord-345211-4ivqlsgt	221	9	testing	testing	NN
cord-345211-4ivqlsgt	221	10	of	of	IN
cord-345211-4ivqlsgt	221	11	induced	induce	VBN
cord-345211-4ivqlsgt	221	12	sputum	sputum	NN
cord-345211-4ivqlsgt	221	13	and	and	CC
cord-345211-4ivqlsgt	221	14	throat	throat	NN
cord-345211-4ivqlsgt	221	15	swabs	swab	NNS
cord-345211-4ivqlsgt	221	16	Contamination	contamination	NN
cord-345211-4ivqlsgt	221	17	of	of	IN
cord-345211-4ivqlsgt	221	18	Qiagen	Qiagen	NNP
cord-345211-4ivqlsgt	221	19	DNA	dna	NN
cord-345211-4ivqlsgt	221	20	extraction	extraction	NN
cord-345211-4ivqlsgt	221	21	kits	kit	NNS
cord-345211-4ivqlsgt	221	22	with	with	IN
cord-345211-4ivqlsgt	221	23	Legionella	Legionella	NNP
cord-345211-4ivqlsgt	221	24	DNA	DNA	NNP
cord-345211-4ivqlsgt	221	25	Acute	acute	JJ
cord-345211-4ivqlsgt	221	26	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	221	27	infection	infection	NN
cord-345211-4ivqlsgt	221	28	due	due	JJ
cord-345211-4ivqlsgt	221	29	to	to	IN
cord-345211-4ivqlsgt	221	30	Mycoplasma	mycoplasma	NN
cord-345211-4ivqlsgt	221	31	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	221	32	:	:	:
cord-345211-4ivqlsgt	221	33	current	current	JJ
cord-345211-4ivqlsgt	221	34	status	status	NN
cord-345211-4ivqlsgt	221	35	of	of	IN
cord-345211-4ivqlsgt	221	36	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	221	37	methods	method	NNS
cord-345211-4ivqlsgt	222	1	Molecular	molecular	JJ
cord-345211-4ivqlsgt	222	2	methods	method	NNS
cord-345211-4ivqlsgt	222	3	for	for	IN
cord-345211-4ivqlsgt	222	4	the	the	DT
cord-345211-4ivqlsgt	222	5	detection	detection	NN
cord-345211-4ivqlsgt	222	6	of	of	IN
cord-345211-4ivqlsgt	222	7	Mycoplasma	Mycoplasma	NNP
cord-345211-4ivqlsgt	222	8	and	and	CC
cord-345211-4ivqlsgt	222	9	Ureaplasma	Ureaplasma	NNP
cord-345211-4ivqlsgt	222	10	infections	infection	NNS
cord-345211-4ivqlsgt	222	11	in	in	IN
cord-345211-4ivqlsgt	222	12	humans	human	NNS
cord-345211-4ivqlsgt	222	13	Detection	detection	NN
cord-345211-4ivqlsgt	222	14	and	and	CC
cord-345211-4ivqlsgt	222	15	characterization	characterization	NN
cord-345211-4ivqlsgt	222	16	of	of	IN
cord-345211-4ivqlsgt	222	17	Mycoplasma	Mycoplasma	NNP
cord-345211-4ivqlsgt	222	18	pneumoniae	pneumoniae	NNS
cord-345211-4ivqlsgt	222	19	during	during	IN
cord-345211-4ivqlsgt	222	20	an	an	DT
cord-345211-4ivqlsgt	222	21	outbreak	outbreak	NN
cord-345211-4ivqlsgt	222	22	of	of	IN
cord-345211-4ivqlsgt	222	23	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	222	24	illness	illness	NN
cord-345211-4ivqlsgt	222	25	at	at	IN
cord-345211-4ivqlsgt	222	26	a	a	DT
cord-345211-4ivqlsgt	222	27	university	university	NN
cord-345211-4ivqlsgt	222	28	Polymerase	Polymerase	NNP
cord-345211-4ivqlsgt	222	29	chain	chain	NN
cord-345211-4ivqlsgt	222	30	reaction	reaction	NN
cord-345211-4ivqlsgt	222	31	is	be	VBZ
cord-345211-4ivqlsgt	222	32	superior	superior	JJ
cord-345211-4ivqlsgt	222	33	to	to	IN
cord-345211-4ivqlsgt	222	34	serology	serology	NN
cord-345211-4ivqlsgt	222	35	for	for	IN
cord-345211-4ivqlsgt	222	36	the	the	DT
cord-345211-4ivqlsgt	222	37	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	222	38	of	of	IN
cord-345211-4ivqlsgt	222	39	acute	acute	JJ
cord-345211-4ivqlsgt	222	40	Mycoplasma	Mycoplasma	NNP
cord-345211-4ivqlsgt	222	41	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	222	42	infection	infection	NN
cord-345211-4ivqlsgt	222	43	and	and	CC
cord-345211-4ivqlsgt	222	44	reveals	reveal	VBZ
cord-345211-4ivqlsgt	222	45	a	a	DT
cord-345211-4ivqlsgt	222	46	high	high	JJ
cord-345211-4ivqlsgt	222	47	rate	rate	NN
cord-345211-4ivqlsgt	222	48	of	of	IN
cord-345211-4ivqlsgt	222	49	persistent	persistent	JJ
cord-345211-4ivqlsgt	222	50	infection	infection	NN
cord-345211-4ivqlsgt	222	51	Standardizing	standardize	VBG
cord-345211-4ivqlsgt	222	52	Chlamydia	Chlamydia	NNP
cord-345211-4ivqlsgt	222	53	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	222	54	assays	assay	NNS
cord-345211-4ivqlsgt	222	55	:	:	:
cord-345211-4ivqlsgt	222	56	recommendations	recommendation	NNS
cord-345211-4ivqlsgt	222	57	from	from	IN
cord-345211-4ivqlsgt	222	58	the	the	DT
cord-345211-4ivqlsgt	222	59	Centers	Centers	NNPS
cord-345211-4ivqlsgt	222	60	for	for	IN
cord-345211-4ivqlsgt	222	61	Diseases	Diseases	NNPS
cord-345211-4ivqlsgt	222	62	Control	Control	NNP
cord-345211-4ivqlsgt	222	63	and	and	CC
cord-345211-4ivqlsgt	222	64	Prevention	Prevention	NNP
cord-345211-4ivqlsgt	222	65	(	(	-LRB-
cord-345211-4ivqlsgt	222	66	USA	USA	NNP
cord-345211-4ivqlsgt	222	67	)	)	-RRB-
cord-345211-4ivqlsgt	222	68	and	and	CC
cord-345211-4ivqlsgt	222	69	the	the	DT
cord-345211-4ivqlsgt	222	70	Laboratory	Laboratory	NNP
cord-345211-4ivqlsgt	222	71	Centre	Centre	NNP
cord-345211-4ivqlsgt	222	72	for	for	IN
cord-345211-4ivqlsgt	222	73	Disease	Disease	NNP
cord-345211-4ivqlsgt	222	74	Control	Control	NNP
cord-345211-4ivqlsgt	222	75	(	(	-LRB-
cord-345211-4ivqlsgt	222	76	Canada	Canada	NNP
cord-345211-4ivqlsgt	222	77	)	)	-RRB-
cord-345211-4ivqlsgt	223	1	Recent	recent	JJ
cord-345211-4ivqlsgt	223	2	advances	advance	NNS
cord-345211-4ivqlsgt	223	3	in	in	IN
cord-345211-4ivqlsgt	223	4	the	the	DT
cord-345211-4ivqlsgt	223	5	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	223	6	of	of	IN
cord-345211-4ivqlsgt	223	7	Pneumocystis	Pneumocystis	NNP
cord-345211-4ivqlsgt	223	8	jirovecii	jirovecii	NNP
cord-345211-4ivqlsgt	223	9	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	223	10	in	in	IN
cord-345211-4ivqlsgt	223	11	HIV	HIV	NNP
cord-345211-4ivqlsgt	223	12	-	-	HYPH
cord-345211-4ivqlsgt	223	13	infected	infect	VBN
cord-345211-4ivqlsgt	223	14	adults	adult	NNS
cord-345211-4ivqlsgt	223	15	Pneumocystis	Pneumocystis	NNP
cord-345211-4ivqlsgt	223	16	carinii	carinii	NN
cord-345211-4ivqlsgt	223	17	carriage	carriage	NN
cord-345211-4ivqlsgt	223	18	in	in	IN
cord-345211-4ivqlsgt	223	19	immunocompromised	immunocompromised	JJ
cord-345211-4ivqlsgt	223	20	patients	patient	NNS
cord-345211-4ivqlsgt	223	21	with	with	IN
cord-345211-4ivqlsgt	223	22	and	and	CC
cord-345211-4ivqlsgt	223	23	without	without	IN
cord-345211-4ivqlsgt	223	24	human	human	JJ
cord-345211-4ivqlsgt	223	25	immunodeficiency	immunodeficiency	NN
cord-345211-4ivqlsgt	223	26	virus	virus	NN
cord-345211-4ivqlsgt	223	27	infection	infection	NN
cord-345211-4ivqlsgt	223	28	Impact	Impact	NNP
cord-345211-4ivqlsgt	223	29	of	of	IN
cord-345211-4ivqlsgt	223	30	HIV	HIV	NNP
cord-345211-4ivqlsgt	223	31	infection	infection	NN
cord-345211-4ivqlsgt	223	32	status	status	NN
cord-345211-4ivqlsgt	223	33	on	on	IN
cord-345211-4ivqlsgt	223	34	interpretation	interpretation	NN
cord-345211-4ivqlsgt	223	35	of	of	IN
cord-345211-4ivqlsgt	223	36	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	223	37	PCR	PCR	NNP
cord-345211-4ivqlsgt	223	38	for	for	IN
cord-345211-4ivqlsgt	223	39	detection	detection	NN
cord-345211-4ivqlsgt	223	40	of	of	IN
cord-345211-4ivqlsgt	223	41	Pneumocystis	Pneumocystis	NNP
cord-345211-4ivqlsgt	223	42	jirovecii	jirovecii	NNP
cord-345211-4ivqlsgt	223	43	Tuberculosis	Tuberculosis	NNP
cord-345211-4ivqlsgt	223	44	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	223	45	in	in	IN
cord-345211-4ivqlsgt	223	46	2015	2015	CD
cord-345211-4ivqlsgt	223	47	:	:	:
cord-345211-4ivqlsgt	223	48	landscape	landscape	NN
cord-345211-4ivqlsgt	223	49	,	,	,
cord-345211-4ivqlsgt	223	50	priorities	priority	NNS
cord-345211-4ivqlsgt	223	51	,	,	,
cord-345211-4ivqlsgt	223	52	needs	need	NNS
cord-345211-4ivqlsgt	223	53	,	,	,
cord-345211-4ivqlsgt	223	54	and	and	CC
cord-345211-4ivqlsgt	223	55	prospects	prospect	NNS
cord-345211-4ivqlsgt	223	56	Molecular	molecular	JJ
cord-345211-4ivqlsgt	223	57	diagnostics	diagnostic	NNS
cord-345211-4ivqlsgt	223	58	for	for	IN
cord-345211-4ivqlsgt	223	59	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	223	60	Automated	automate	VBN
cord-345211-4ivqlsgt	223	61	real	real	JJ
cord-345211-4ivqlsgt	223	62	-	-	HYPH
cord-345211-4ivqlsgt	223	63	time	time	NN
cord-345211-4ivqlsgt	223	64	nucleic	nucleic	JJ
cord-345211-4ivqlsgt	223	65	acid	acid	NN
cord-345211-4ivqlsgt	223	66	amplification	amplification	NN
cord-345211-4ivqlsgt	223	67	technology	technology	NN
cord-345211-4ivqlsgt	223	68	for	for	IN
cord-345211-4ivqlsgt	223	69	rapid	rapid	JJ
cord-345211-4ivqlsgt	223	70	and	and	CC
cord-345211-4ivqlsgt	223	71	simultaneous	simultaneous	JJ
cord-345211-4ivqlsgt	223	72	detection	detection	NN
cord-345211-4ivqlsgt	223	73	of	of	IN
cord-345211-4ivqlsgt	223	74	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	223	75	and	and	CC
cord-345211-4ivqlsgt	223	76	rifampicin	rifampicin	NN
cord-345211-4ivqlsgt	223	77	resistance	resistance	NN
cord-345211-4ivqlsgt	223	78	:	:	:
cord-345211-4ivqlsgt	224	1	xpert	xpert	NNP
cord-345211-4ivqlsgt	224	2	MTB	MTB	NNP
cord-345211-4ivqlsgt	224	3	/	/	SYM
cord-345211-4ivqlsgt	224	4	RIF	RIF	NNP
cord-345211-4ivqlsgt	224	5	assay	assay	NN
cord-345211-4ivqlsgt	224	6	for	for	IN
cord-345211-4ivqlsgt	224	7	the	the	DT
cord-345211-4ivqlsgt	224	8	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	224	9	of	of	IN
cord-345211-4ivqlsgt	224	10	pulmonary	pulmonary	JJ
cord-345211-4ivqlsgt	224	11	and	and	CC
cord-345211-4ivqlsgt	224	12	extrapulmonary	extrapulmonary	JJ
cord-345211-4ivqlsgt	224	13	TB	TB	NNP
cord-345211-4ivqlsgt	224	14	in	in	IN
cord-345211-4ivqlsgt	224	15	adults	adult	NNS
cord-345211-4ivqlsgt	224	16	and	and	CC
cord-345211-4ivqlsgt	224	17	children	child	NNS
cord-345211-4ivqlsgt	224	18	:	:	:
cord-345211-4ivqlsgt	224	19	policy	policy	NN
cord-345211-4ivqlsgt	224	20	update	update	NN
cord-345211-4ivqlsgt	224	21	.	.	.
cord-345211-4ivqlsgt	225	1	Geneva	Geneva	NNP
cord-345211-4ivqlsgt	225	2	:	:	:
cord-345211-4ivqlsgt	226	1	World	World	NNP
cord-345211-4ivqlsgt	226	2	Health	Health	NNP
cord-345211-4ivqlsgt	226	3	Organization	Organization	NNP
cord-345211-4ivqlsgt	226	4	Towards	towards	IN
cord-345211-4ivqlsgt	226	5	improved	improved	JJ
cord-345211-4ivqlsgt	226	6	accuracy	accuracy	NN
cord-345211-4ivqlsgt	226	7	of	of	IN
cord-345211-4ivqlsgt	226	8	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	226	9	pertussis	pertussis	NN
cord-345211-4ivqlsgt	226	10	nucleic	nucleic	VBZ
cord-345211-4ivqlsgt	226	11	acid	acid	NN
cord-345211-4ivqlsgt	226	12	amplification	amplification	NN
cord-345211-4ivqlsgt	226	13	tests	test	NNS
cord-345211-4ivqlsgt	226	14	Nucleic	nucleic	JJ
cord-345211-4ivqlsgt	226	15	acid	acid	NN
cord-345211-4ivqlsgt	226	16	amplification	amplification	NN
cord-345211-4ivqlsgt	226	17	tests	test	NNS
cord-345211-4ivqlsgt	226	18	for	for	IN
cord-345211-4ivqlsgt	226	19	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	226	20	of	of	IN
cord-345211-4ivqlsgt	226	21	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	226	22	infections	infection	NNS
cord-345211-4ivqlsgt	226	23	Laboratory	Laboratory	NNP
cord-345211-4ivqlsgt	226	24	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	226	25	of	of	IN
cord-345211-4ivqlsgt	226	26	pertussis	pertussis	NN
cord-345211-4ivqlsgt	226	27	Bordetella	Bordetella	NNP
cord-345211-4ivqlsgt	226	28	pertussis	pertussis	NN
cord-345211-4ivqlsgt	226	29	in	in	IN
cord-345211-4ivqlsgt	226	30	adult	adult	NN
cord-345211-4ivqlsgt	226	31	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	226	32	patients	patient	NNS
cord-345211-4ivqlsgt	227	1	Pertussis	pertussis	NN
cord-345211-4ivqlsgt	227	2	:	:	:
cord-345211-4ivqlsgt	227	3	review	review	NN
cord-345211-4ivqlsgt	227	4	of	of	IN
cord-345211-4ivqlsgt	227	5	epidemiology	epidemiology	NN
cord-345211-4ivqlsgt	227	6	,	,	,
cord-345211-4ivqlsgt	227	7	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	227	8	,	,	,
cord-345211-4ivqlsgt	227	9	management	management	NN
cord-345211-4ivqlsgt	227	10	and	and	CC
cord-345211-4ivqlsgt	227	11	prevention	prevention	NN
cord-345211-4ivqlsgt	227	12	A	a	DT
cord-345211-4ivqlsgt	227	13	boarding	board	VBG
cord-345211-4ivqlsgt	227	14	school	school	NN
cord-345211-4ivqlsgt	227	15	outbreak	outbreak	NN
cord-345211-4ivqlsgt	227	16	of	of	IN
cord-345211-4ivqlsgt	227	17	pertussis	pertussis	NN
cord-345211-4ivqlsgt	227	18	in	in	IN
cord-345211-4ivqlsgt	227	19	adolescents	adolescent	NNS
cord-345211-4ivqlsgt	227	20	:	:	:
cord-345211-4ivqlsgt	227	21	value	value	NN
cord-345211-4ivqlsgt	227	22	of	of	IN
cord-345211-4ivqlsgt	227	23	laboratory	laboratory	NN
cord-345211-4ivqlsgt	227	24	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	227	25	methods	method	NNS
cord-345211-4ivqlsgt	227	26	Epidemiology	epidemiology	NN
cord-345211-4ivqlsgt	227	27	and	and	CC
cord-345211-4ivqlsgt	227	28	control	control	NN
cord-345211-4ivqlsgt	227	29	of	of	IN
cord-345211-4ivqlsgt	227	30	pertussis	pertussis	NN
cord-345211-4ivqlsgt	227	31	outbreaks	outbreak	NNS
cord-345211-4ivqlsgt	227	32	in	in	IN
cord-345211-4ivqlsgt	227	33	a	a	DT
cord-345211-4ivqlsgt	227	34	tertiary	tertiary	JJ
cord-345211-4ivqlsgt	227	35	care	care	NN
cord-345211-4ivqlsgt	227	36	center	center	NN
cord-345211-4ivqlsgt	227	37	and	and	CC
cord-345211-4ivqlsgt	227	38	the	the	DT
cord-345211-4ivqlsgt	227	39	resource	resource	NN
cord-345211-4ivqlsgt	227	40	consumption	consumption	NN
cord-345211-4ivqlsgt	227	41	associated	associate	VBN
cord-345211-4ivqlsgt	227	42	with	with	IN
cord-345211-4ivqlsgt	227	43	these	these	DT
cord-345211-4ivqlsgt	227	44	outbreaks	outbreak	NNS
cord-345211-4ivqlsgt	227	45	Laboratory	Laboratory	NNP
cord-345211-4ivqlsgt	227	46	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	227	47	of	of	IN
cord-345211-4ivqlsgt	227	48	invasive	invasive	JJ
cord-345211-4ivqlsgt	227	49	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	50	disease	disease	NN
cord-345211-4ivqlsgt	227	51	Carriage	carriage	NN
cord-345211-4ivqlsgt	227	52	of	of	IN
cord-345211-4ivqlsgt	227	53	Streptococcus	Streptococcus	NNP
cord-345211-4ivqlsgt	227	54	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	227	55	and	and	CC
cord-345211-4ivqlsgt	227	56	other	other	JJ
cord-345211-4ivqlsgt	227	57	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	227	58	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	227	59	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	227	60	in	in	IN
cord-345211-4ivqlsgt	227	61	low	low	JJ
cord-345211-4ivqlsgt	227	62	and	and	CC
cord-345211-4ivqlsgt	227	63	lower	low	JJR
cord-345211-4ivqlsgt	227	64	-	-	HYPH
cord-345211-4ivqlsgt	227	65	middle	middle	JJ
cord-345211-4ivqlsgt	227	66	income	income	NN
cord-345211-4ivqlsgt	227	67	countries	country	NNS
cord-345211-4ivqlsgt	227	68	:	:	:
cord-345211-4ivqlsgt	227	69	a	a	DT
cord-345211-4ivqlsgt	227	70	systematic	systematic	JJ
cord-345211-4ivqlsgt	227	71	review	review	NN
cord-345211-4ivqlsgt	227	72	and	and	CC
cord-345211-4ivqlsgt	227	73	meta	meta	NNP
cord-345211-4ivqlsgt	227	74	-	-	HYPH
cord-345211-4ivqlsgt	227	75	analysis	analysis	NNP
cord-345211-4ivqlsgt	227	76	Evaluation	Evaluation	NNP
cord-345211-4ivqlsgt	227	77	of	of	IN
cord-345211-4ivqlsgt	227	78	a	a	DT
cord-345211-4ivqlsgt	227	79	PCR	PCR	NNP
cord-345211-4ivqlsgt	227	80	assay	assay	NN
cord-345211-4ivqlsgt	227	81	for	for	IN
cord-345211-4ivqlsgt	227	82	detection	detection	NN
cord-345211-4ivqlsgt	227	83	of	of	IN
cord-345211-4ivqlsgt	227	84	Streptococcus	streptococcus	NN
cord-345211-4ivqlsgt	227	85	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	227	86	in	in	IN
cord-345211-4ivqlsgt	227	87	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	227	88	and	and	CC
cord-345211-4ivqlsgt	227	89	nonrespiratory	nonrespiratory	NN
cord-345211-4ivqlsgt	227	90	samples	sample	NNS
cord-345211-4ivqlsgt	227	91	from	from	IN
cord-345211-4ivqlsgt	227	92	adults	adult	NNS
cord-345211-4ivqlsgt	227	93	with	with	IN
cord-345211-4ivqlsgt	227	94	community	community	NN
cord-345211-4ivqlsgt	227	95	-	-	HYPH
cord-345211-4ivqlsgt	227	96	acquired	acquire	VBN
cord-345211-4ivqlsgt	227	97	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	227	98	Evaluation	evaluation	NN
cord-345211-4ivqlsgt	227	99	and	and	CC
cord-345211-4ivqlsgt	227	100	improvement	improvement	NN
cord-345211-4ivqlsgt	227	101	of	of	IN
cord-345211-4ivqlsgt	227	102	real	real	JJ
cord-345211-4ivqlsgt	227	103	-	-	HYPH
cord-345211-4ivqlsgt	227	104	time	time	NN
cord-345211-4ivqlsgt	227	105	PCR	PCR	NNP
cord-345211-4ivqlsgt	227	106	assays	assay	NNS
cord-345211-4ivqlsgt	227	107	targeting	target	VBG
cord-345211-4ivqlsgt	227	108	lytA	lyta	VB
cord-345211-4ivqlsgt	227	109	,	,	,
cord-345211-4ivqlsgt	227	110	ply	ply	NN
cord-345211-4ivqlsgt	227	111	,	,	,
cord-345211-4ivqlsgt	227	112	and	and	CC
cord-345211-4ivqlsgt	227	113	psaA	psaa	IN
cord-345211-4ivqlsgt	227	114	genes	gene	NNS
cord-345211-4ivqlsgt	227	115	for	for	IN
cord-345211-4ivqlsgt	227	116	detection	detection	NN
cord-345211-4ivqlsgt	227	117	of	of	IN
cord-345211-4ivqlsgt	227	118	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	119	DNA	DNA	NNP
cord-345211-4ivqlsgt	227	120	Real	real	JJ
cord-345211-4ivqlsgt	227	121	-	-	HYPH
cord-345211-4ivqlsgt	227	122	time	time	NN
cord-345211-4ivqlsgt	227	123	PCR	PCR	NNP
cord-345211-4ivqlsgt	227	124	is	be	VBZ
cord-345211-4ivqlsgt	227	125	more	more	RBR
cord-345211-4ivqlsgt	227	126	sensitive	sensitive	JJ
cord-345211-4ivqlsgt	227	127	than	than	IN
cord-345211-4ivqlsgt	227	128	multiplex	multiplex	JJ
cord-345211-4ivqlsgt	227	129	PCR	pcr	NN
cord-345211-4ivqlsgt	227	130	for	for	IN
cord-345211-4ivqlsgt	227	131	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	227	132	and	and	CC
cord-345211-4ivqlsgt	227	133	serotyping	serotype	VBG
cord-345211-4ivqlsgt	227	134	in	in	IN
cord-345211-4ivqlsgt	227	135	children	child	NNS
cord-345211-4ivqlsgt	227	136	with	with	IN
cord-345211-4ivqlsgt	227	137	culture	culture	NN
cord-345211-4ivqlsgt	227	138	negative	negative	JJ
cord-345211-4ivqlsgt	227	139	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	140	invasive	invasive	JJ
cord-345211-4ivqlsgt	227	141	disease	disease	NN
cord-345211-4ivqlsgt	227	142	Molecular	molecular	JJ
cord-345211-4ivqlsgt	227	143	detection	detection	NN
cord-345211-4ivqlsgt	227	144	methods	method	NNS
cord-345211-4ivqlsgt	227	145	and	and	CC
cord-345211-4ivqlsgt	227	146	serotyping	serotyping	NN
cord-345211-4ivqlsgt	227	147	performed	perform	VBN
cord-345211-4ivqlsgt	227	148	directly	directly	RB
cord-345211-4ivqlsgt	227	149	on	on	IN
cord-345211-4ivqlsgt	227	150	clinical	clinical	JJ
cord-345211-4ivqlsgt	227	151	samples	sample	NNS
cord-345211-4ivqlsgt	227	152	improve	improve	VBP
cord-345211-4ivqlsgt	227	153	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	227	154	sensitivity	sensitivity	NN
cord-345211-4ivqlsgt	227	155	and	and	CC
cord-345211-4ivqlsgt	227	156	reveal	reveal	VB
cord-345211-4ivqlsgt	227	157	increased	increase	VBN
cord-345211-4ivqlsgt	227	158	incidence	incidence	NN
cord-345211-4ivqlsgt	227	159	of	of	IN
cord-345211-4ivqlsgt	227	160	invasive	invasive	JJ
cord-345211-4ivqlsgt	227	161	disease	disease	NN
cord-345211-4ivqlsgt	227	162	by	by	IN
cord-345211-4ivqlsgt	227	163	Streptococcus	streptococcus	NN
cord-345211-4ivqlsgt	227	164	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	227	165	in	in	IN
cord-345211-4ivqlsgt	227	166	Italian	italian	JJ
cord-345211-4ivqlsgt	227	167	children	child	NNS
cord-345211-4ivqlsgt	227	168	Bacteremic	Bacteremic	NNP
cord-345211-4ivqlsgt	227	169	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	170	community	community	NN
cord-345211-4ivqlsgt	227	171	-	-	HYPH
cord-345211-4ivqlsgt	227	172	acquired	acquire	VBN
cord-345211-4ivqlsgt	227	173	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	227	174	in	in	IN
cord-345211-4ivqlsgt	227	175	children	child	NNS
cord-345211-4ivqlsgt	227	176	less	less	JJR
cord-345211-4ivqlsgt	227	177	than	than	IN
cord-345211-4ivqlsgt	227	178	5	5	CD
cord-345211-4ivqlsgt	227	179	years	year	NNS
cord-345211-4ivqlsgt	227	180	of	of	IN
cord-345211-4ivqlsgt	227	181	age	age	NN
cord-345211-4ivqlsgt	227	182	in	in	IN
cord-345211-4ivqlsgt	227	183	Italy	Italy	NNP
cord-345211-4ivqlsgt	227	184	Detection	Detection	NNP
cord-345211-4ivqlsgt	227	185	of	of	IN
cord-345211-4ivqlsgt	227	186	Streptococcus	Streptococcus	NNP
cord-345211-4ivqlsgt	227	187	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	227	188	and	and	CC
cord-345211-4ivqlsgt	227	189	identification	identification	NN
cord-345211-4ivqlsgt	227	190	of	of	IN
cord-345211-4ivqlsgt	227	191	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	192	serotypes	serotype	NNS
cord-345211-4ivqlsgt	227	193	by	by	IN
cord-345211-4ivqlsgt	227	194	realtime	realtime	JJ
cord-345211-4ivqlsgt	227	195	polymerase	polymerase	NN
cord-345211-4ivqlsgt	227	196	chain	chain	NN
cord-345211-4ivqlsgt	227	197	reaction	reaction	NN
cord-345211-4ivqlsgt	227	198	using	use	VBG
cord-345211-4ivqlsgt	227	199	blood	blood	NN
cord-345211-4ivqlsgt	227	200	samples	sample	NNS
cord-345211-4ivqlsgt	227	201	from	from	IN
cord-345211-4ivqlsgt	227	202	Italian	italian	JJ
cord-345211-4ivqlsgt	227	203	children	child	NNS
cord-345211-4ivqlsgt	227	204	≤5	≤5	NN
cord-345211-4ivqlsgt	227	205	years	year	NNS
cord-345211-4ivqlsgt	227	206	of	of	IN
cord-345211-4ivqlsgt	227	207	age	age	NN
cord-345211-4ivqlsgt	227	208	with	with	IN
cord-345211-4ivqlsgt	227	209	community	community	NN
cord-345211-4ivqlsgt	227	210	-	-	HYPH
cord-345211-4ivqlsgt	227	211	acquired	acquire	VBN
cord-345211-4ivqlsgt	227	212	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	227	213	Pneumococcal	Pneumococcal	NNP
cord-345211-4ivqlsgt	227	214	DNA	DNA	NNP
cord-345211-4ivqlsgt	227	215	is	be	VBZ
cord-345211-4ivqlsgt	227	216	not	not	RB
cord-345211-4ivqlsgt	227	217	detectable	detectable	JJ
cord-345211-4ivqlsgt	227	218	in	in	IN
cord-345211-4ivqlsgt	227	219	the	the	DT
cord-345211-4ivqlsgt	227	220	blood	blood	NN
cord-345211-4ivqlsgt	227	221	of	of	IN
cord-345211-4ivqlsgt	227	222	healthy	healthy	JJ
cord-345211-4ivqlsgt	227	223	carrier	carrier	NN
cord-345211-4ivqlsgt	227	224	children	child	NNS
cord-345211-4ivqlsgt	227	225	by	by	IN
cord-345211-4ivqlsgt	227	226	real	real	JJ
cord-345211-4ivqlsgt	227	227	-	-	HYPH
cord-345211-4ivqlsgt	227	228	time	time	NN
cord-345211-4ivqlsgt	227	229	PCR	PCR	NNP
cord-345211-4ivqlsgt	227	230	targeting	target	VBG
cord-345211-4ivqlsgt	227	231	the	the	DT
cord-345211-4ivqlsgt	227	232	lytA	lyta	JJ
cord-345211-4ivqlsgt	227	233	gene	gene	NN
cord-345211-4ivqlsgt	227	234	PCR	PCR	NNP
cord-345211-4ivqlsgt	227	235	using	use	VBG
cord-345211-4ivqlsgt	227	236	blood	blood	NN
cord-345211-4ivqlsgt	227	237	for	for	IN
cord-345211-4ivqlsgt	227	238	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	227	239	of	of	IN
cord-345211-4ivqlsgt	227	240	invasive	invasive	JJ
cord-345211-4ivqlsgt	227	241	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	227	242	disease	disease	NN
cord-345211-4ivqlsgt	227	243	:	:	:
cord-345211-4ivqlsgt	227	244	systematic	systematic	JJ
cord-345211-4ivqlsgt	227	245	review	review	NN
cord-345211-4ivqlsgt	227	246	and	and	CC
cord-345211-4ivqlsgt	227	247	meta	meta	NNP
cord-345211-4ivqlsgt	227	248	-	-	HYPH
cord-345211-4ivqlsgt	227	249	analysis	analysis	NN
cord-345211-4ivqlsgt	228	1	The	the	DT
cord-345211-4ivqlsgt	228	2	PERCH	perch	NN
cord-345211-4ivqlsgt	228	3	study	study	NN
cord-345211-4ivqlsgt	228	4	group	group	NN
cord-345211-4ivqlsgt	228	5	.	.	.
cord-345211-4ivqlsgt	229	1	Detection	detection	NN
cord-345211-4ivqlsgt	229	2	of	of	IN
cord-345211-4ivqlsgt	229	3	Streptococcus	streptococcus	NN
cord-345211-4ivqlsgt	229	4	pneumoniae	pneumoniae	NN
cord-345211-4ivqlsgt	229	5	by	by	IN
cord-345211-4ivqlsgt	229	6	whole	whole	JJ
cord-345211-4ivqlsgt	229	7	blood	blood	NN
cord-345211-4ivqlsgt	229	8	lytA	lyta	VBP
cord-345211-4ivqlsgt	229	9	PCR	PCR	NNP
cord-345211-4ivqlsgt	229	10	and	and	CC
cord-345211-4ivqlsgt	229	11	association	association	NN
cord-345211-4ivqlsgt	229	12	with	with	IN
cord-345211-4ivqlsgt	229	13	pediatric	pediatric	JJ
cord-345211-4ivqlsgt	229	14	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	229	15	Detection	detection	NN
cord-345211-4ivqlsgt	229	16	of	of	IN
cord-345211-4ivqlsgt	229	17	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	229	18	and	and	CC
cord-345211-4ivqlsgt	229	19	viruses	virus	NNS
cord-345211-4ivqlsgt	229	20	in	in	IN
cord-345211-4ivqlsgt	229	21	the	the	DT
cord-345211-4ivqlsgt	229	22	pleural	pleural	JJ
cord-345211-4ivqlsgt	229	23	effusion	effusion	NN
cord-345211-4ivqlsgt	229	24	of	of	IN
cord-345211-4ivqlsgt	229	25	children	child	NNS
cord-345211-4ivqlsgt	229	26	and	and	CC
cord-345211-4ivqlsgt	229	27	adults	adult	NNS
cord-345211-4ivqlsgt	229	28	with	with	IN
cord-345211-4ivqlsgt	229	29	community	community	NN
cord-345211-4ivqlsgt	229	30	-	-	HYPH
cord-345211-4ivqlsgt	229	31	acquired	acquire	VBN
cord-345211-4ivqlsgt	229	32	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	229	33	Pleural	Pleural	NNP
cord-345211-4ivqlsgt	229	34	fluid	fluid	NN
cord-345211-4ivqlsgt	229	35	nucleic	nucleic	JJ
cord-345211-4ivqlsgt	229	36	acid	acid	NN
cord-345211-4ivqlsgt	229	37	testing	testing	NN
cord-345211-4ivqlsgt	229	38	enhances	enhance	VBZ
cord-345211-4ivqlsgt	229	39	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	229	40	surveillance	surveillance	NN
cord-345211-4ivqlsgt	229	41	in	in	IN
cord-345211-4ivqlsgt	229	42	children	child	NNS
cord-345211-4ivqlsgt	229	43	Viral	viral	JJ
cord-345211-4ivqlsgt	229	44	pathogen	pathogen	NN
cord-345211-4ivqlsgt	229	45	discovery	discovery	NN
cord-345211-4ivqlsgt	230	1	The	the	DT
cord-345211-4ivqlsgt	230	2	changing	change	VBG
cord-345211-4ivqlsgt	230	3	face	face	NN
cord-345211-4ivqlsgt	230	4	of	of	IN
cord-345211-4ivqlsgt	230	5	pathogen	pathogen	NN
cord-345211-4ivqlsgt	230	6	discovery	discovery	NN
cord-345211-4ivqlsgt	230	7	and	and	CC
cord-345211-4ivqlsgt	230	8	surveillance	surveillance	NN
cord-345211-4ivqlsgt	231	1	The	the	DT
cord-345211-4ivqlsgt	231	2	use	use	NN
cord-345211-4ivqlsgt	231	3	of	of	IN
cord-345211-4ivqlsgt	231	4	next	next	JJ
cord-345211-4ivqlsgt	231	5	generation	generation	NN
cord-345211-4ivqlsgt	231	6	sequencing	sequencing	NN
cord-345211-4ivqlsgt	231	7	in	in	IN
cord-345211-4ivqlsgt	231	8	the	the	DT
cord-345211-4ivqlsgt	231	9	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	231	10	and	and	CC
cord-345211-4ivqlsgt	231	11	typing	typing	NN
cord-345211-4ivqlsgt	231	12	of	of	IN
cord-345211-4ivqlsgt	231	13	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	231	14	infections	infection	NNS
cord-345211-4ivqlsgt	231	15	Genetic	genetic	JJ
cord-345211-4ivqlsgt	231	16	testing	testing	NN
cord-345211-4ivqlsgt	231	17	and	and	CC
cord-345211-4ivqlsgt	231	18	FDA	FDA	NNP
cord-345211-4ivqlsgt	231	19	regulation	regulation	NN
cord-345211-4ivqlsgt	231	20	:	:	:
cord-345211-4ivqlsgt	231	21	overregulation	overregulation	NN
cord-345211-4ivqlsgt	231	22	threatens	threaten	VBZ
cord-345211-4ivqlsgt	231	23	the	the	DT
cord-345211-4ivqlsgt	231	24	emergence	emergence	NN
cord-345211-4ivqlsgt	231	25	of	of	IN
cord-345211-4ivqlsgt	231	26	genomic	genomic	JJ
cord-345211-4ivqlsgt	231	27	medicine	medicine	NN
cord-345211-4ivqlsgt	231	28	FDA	FDA	NNP
cord-345211-4ivqlsgt	231	29	regulation	regulation	NN
cord-345211-4ivqlsgt	231	30	of	of	IN
cord-345211-4ivqlsgt	231	31	laboratory	laboratory	NN
cord-345211-4ivqlsgt	231	32	-	-	HYPH
cord-345211-4ivqlsgt	231	33	developed	develop	VBN
cord-345211-4ivqlsgt	231	34	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	231	35	tests	test	NNS
cord-345211-4ivqlsgt	231	36	:	:	:
cord-345211-4ivqlsgt	231	37	protect	protect	VB
cord-345211-4ivqlsgt	231	38	the	the	DT
cord-345211-4ivqlsgt	231	39	public	public	NN
cord-345211-4ivqlsgt	231	40	,	,	,
cord-345211-4ivqlsgt	231	41	advance	advance	VB
cord-345211-4ivqlsgt	231	42	the	the	DT
cord-345211-4ivqlsgt	231	43	science	science	NN
cord-345211-4ivqlsgt	232	1	The	the	DT
cord-345211-4ivqlsgt	232	2	lung	lung	NN
cord-345211-4ivqlsgt	232	3	microbiome	microbiome	NN
cord-345211-4ivqlsgt	232	4	:	:	:
cord-345211-4ivqlsgt	232	5	new	new	JJ
cord-345211-4ivqlsgt	232	6	principles	principle	NNS
cord-345211-4ivqlsgt	232	7	for	for	IN
cord-345211-4ivqlsgt	232	8	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	232	9	bacteriology	bacteriology	NN
cord-345211-4ivqlsgt	232	10	in	in	IN
cord-345211-4ivqlsgt	232	11	health	health	NN
cord-345211-4ivqlsgt	232	12	and	and	CC
cord-345211-4ivqlsgt	232	13	disease	disease	NN
cord-345211-4ivqlsgt	233	1	A	a	DT
cord-345211-4ivqlsgt	233	2	recent	recent	JJ
cord-345211-4ivqlsgt	233	3	review	review	NN
cord-345211-4ivqlsgt	233	4	of	of	IN
cord-345211-4ivqlsgt	233	5	recent	recent	JJ
cord-345211-4ivqlsgt	233	6	current	current	JJ
cord-345211-4ivqlsgt	233	7	knowledge	knowledge	NN
cord-345211-4ivqlsgt	233	8	about	about	IN
cord-345211-4ivqlsgt	233	9	the	the	DT
cord-345211-4ivqlsgt	233	10	lung	lung	NN
cord-345211-4ivqlsgt	233	11	microbiome	microbiome	NN
cord-345211-4ivqlsgt	234	1	The	the	DT
cord-345211-4ivqlsgt	234	2	co	co	NN
cord-345211-4ivqlsgt	234	3	-	-	NN
cord-345211-4ivqlsgt	234	4	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	234	5	of	of	IN
cord-345211-4ivqlsgt	234	6	influenza	influenza	NN
cord-345211-4ivqlsgt	234	7	viruses	virus	NNS
cord-345211-4ivqlsgt	234	8	with	with	IN
cord-345211-4ivqlsgt	234	9	bacteria	bacteria	NNS
cord-345211-4ivqlsgt	234	10	in	in	IN
cord-345211-4ivqlsgt	234	11	the	the	DT
cord-345211-4ivqlsgt	234	12	lung	lung	NN
cord-345211-4ivqlsgt	234	13	Viral	Viral	NNP
cord-345211-4ivqlsgt	234	14	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	234	15	co	co	NN
cord-345211-4ivqlsgt	234	16	-	-	NN
cord-345211-4ivqlsgt	234	17	infection	infection	NN
cord-345211-4ivqlsgt	234	18	of	of	IN
cord-345211-4ivqlsgt	234	19	the	the	DT
cord-345211-4ivqlsgt	234	20	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	234	21	tract	tract	NN
cord-345211-4ivqlsgt	234	22	during	during	IN
cord-345211-4ivqlsgt	234	23	early	early	JJ
cord-345211-4ivqlsgt	234	24	childhood	childhood	NN
cord-345211-4ivqlsgt	234	25	Polymicrobial	polymicrobial	JJ
cord-345211-4ivqlsgt	234	26	community	community	NN
cord-345211-4ivqlsgt	234	27	-	-	HYPH
cord-345211-4ivqlsgt	234	28	acquired	acquire	VBN
cord-345211-4ivqlsgt	234	29	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	234	30	:	:	:
cord-345211-4ivqlsgt	234	31	an	an	DT
cord-345211-4ivqlsgt	234	32	emerging	emerge	VBG
cord-345211-4ivqlsgt	234	33	entity	entity	NN
cord-345211-4ivqlsgt	235	1	The	the	DT
cord-345211-4ivqlsgt	235	2	microbiome	microbiome	NN
cord-345211-4ivqlsgt	235	3	and	and	CC
cord-345211-4ivqlsgt	235	4	critical	critical	JJ
cord-345211-4ivqlsgt	235	5	illness	illness	NN
cord-345211-4ivqlsgt	235	6	Towards	towards	IN
cord-345211-4ivqlsgt	235	7	an	an	DT
cord-345211-4ivqlsgt	235	8	ecology	ecology	NN
cord-345211-4ivqlsgt	235	9	of	of	IN
cord-345211-4ivqlsgt	235	10	the	the	DT
cord-345211-4ivqlsgt	235	11	lung	lung	NN
cord-345211-4ivqlsgt	235	12	:	:	:
cord-345211-4ivqlsgt	235	13	new	new	JJ
cord-345211-4ivqlsgt	235	14	conceptual	conceptual	JJ
cord-345211-4ivqlsgt	235	15	models	model	NNS
cord-345211-4ivqlsgt	235	16	of	of	IN
cord-345211-4ivqlsgt	235	17	pulmonary	pulmonary	JJ
cord-345211-4ivqlsgt	235	18	microbiology	microbiology	NN
cord-345211-4ivqlsgt	235	19	and	and	CC
cord-345211-4ivqlsgt	235	20	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	235	21	pathogenesis	pathogenesis	NN
cord-345211-4ivqlsgt	235	22	Precision	Precision	NNP
cord-345211-4ivqlsgt	235	23	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	235	24	medicine	medicine	NN
cord-345211-4ivqlsgt	235	25	and	and	CC
cord-345211-4ivqlsgt	235	26	the	the	DT
cord-345211-4ivqlsgt	235	27	microbiome	microbiome	NN
cord-345211-4ivqlsgt	235	28	Analysis	Analysis	NNP
cord-345211-4ivqlsgt	235	29	of	of	IN
cord-345211-4ivqlsgt	235	30	the	the	DT
cord-345211-4ivqlsgt	235	31	upper	upper	JJ
cord-345211-4ivqlsgt	235	32	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	235	33	tract	tract	NN
cord-345211-4ivqlsgt	235	34	microbiotas	microbiotas	NN
cord-345211-4ivqlsgt	235	35	as	as	IN
cord-345211-4ivqlsgt	235	36	the	the	DT
cord-345211-4ivqlsgt	235	37	source	source	NN
cord-345211-4ivqlsgt	235	38	of	of	IN
cord-345211-4ivqlsgt	235	39	the	the	DT
cord-345211-4ivqlsgt	235	40	lung	lung	NN
cord-345211-4ivqlsgt	235	41	and	and	CC
cord-345211-4ivqlsgt	235	42	gastric	gastric	JJ
cord-345211-4ivqlsgt	235	43	microbiotas	microbiota	NNS
cord-345211-4ivqlsgt	235	44	in	in	IN
cord-345211-4ivqlsgt	235	45	healthy	healthy	JJ
cord-345211-4ivqlsgt	235	46	individuals	individual	NNS
cord-345211-4ivqlsgt	236	1	The	the	DT
cord-345211-4ivqlsgt	236	2	microbiome	microbiome	NN
cord-345211-4ivqlsgt	236	3	and	and	CC
cord-345211-4ivqlsgt	236	4	the	the	DT
cord-345211-4ivqlsgt	236	5	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	236	6	tract	tract	NN
cord-345211-4ivqlsgt	236	7	Whole	whole	JJ
cord-345211-4ivqlsgt	236	8	genome	genome	NN
cord-345211-4ivqlsgt	236	9	sequencing	sequencing	NN
cord-345211-4ivqlsgt	236	10	in	in	IN
cord-345211-4ivqlsgt	236	11	clinical	clinical	JJ
cord-345211-4ivqlsgt	236	12	and	and	CC
cord-345211-4ivqlsgt	236	13	public	public	JJ
cord-345211-4ivqlsgt	236	14	health	health	NN
cord-345211-4ivqlsgt	236	15	microbiology	microbiology	NN
cord-345211-4ivqlsgt	236	16	Comprehensive	Comprehensive	NNP
cord-345211-4ivqlsgt	236	17	molecular	molecular	JJ
cord-345211-4ivqlsgt	236	18	testing	testing	NN
cord-345211-4ivqlsgt	236	19	for	for	IN
cord-345211-4ivqlsgt	236	20	respiratory	respiratory	JJ
cord-345211-4ivqlsgt	236	21	pathogens	pathogen	NNS
cord-345211-4ivqlsgt	236	22	in	in	IN
cord-345211-4ivqlsgt	236	23	community	community	NN
cord-345211-4ivqlsgt	236	24	-	-	HYPH
cord-345211-4ivqlsgt	236	25	acquired	acquire	VBN
cord-345211-4ivqlsgt	236	26	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	236	27	Comparison	comparison	NN
cord-345211-4ivqlsgt	236	28	of	of	IN
cord-345211-4ivqlsgt	236	29	sputum	sputum	NN
cord-345211-4ivqlsgt	236	30	and	and	CC
cord-345211-4ivqlsgt	236	31	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	236	32	aspirate	aspirate	NN
cord-345211-4ivqlsgt	236	33	samples	sample	NNS
cord-345211-4ivqlsgt	236	34	and	and	CC
cord-345211-4ivqlsgt	236	35	of	of	IN
cord-345211-4ivqlsgt	236	36	the	the	DT
cord-345211-4ivqlsgt	236	37	PCR	PCR	NNP
cord-345211-4ivqlsgt	236	38	gene	gene	NN
cord-345211-4ivqlsgt	236	39	targets	target	NNS
cord-345211-4ivqlsgt	236	40	lytA	lyta	VBP
cord-345211-4ivqlsgt	236	41	and	and	CC
cord-345211-4ivqlsgt	236	42	Spn9802	Spn9802	NNP
cord-345211-4ivqlsgt	236	43	for	for	IN
cord-345211-4ivqlsgt	236	44	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	236	45	PCR	PCR	NNP
cord-345211-4ivqlsgt	236	46	for	for	IN
cord-345211-4ivqlsgt	236	47	rapid	rapid	JJ
cord-345211-4ivqlsgt	236	48	detection	detection	NN
cord-345211-4ivqlsgt	236	49	of	of	IN
cord-345211-4ivqlsgt	236	50	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	236	51	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	236	52	Genomic	Genomic	NNP
cord-345211-4ivqlsgt	236	53	load	load	NN
cord-345211-4ivqlsgt	236	54	from	from	IN
cord-345211-4ivqlsgt	236	55	sputum	sputum	NN
cord-345211-4ivqlsgt	236	56	samples	sample	NNS
cord-345211-4ivqlsgt	236	57	and	and	CC
cord-345211-4ivqlsgt	236	58	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	236	59	swabs	swab	NNS
cord-345211-4ivqlsgt	236	60	for	for	IN
cord-345211-4ivqlsgt	236	61	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	236	62	of	of	IN
cord-345211-4ivqlsgt	236	63	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	236	64	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	236	65	in	in	IN
cord-345211-4ivqlsgt	236	66	HIV	HIV	NNP
cord-345211-4ivqlsgt	236	67	-	-	HYPH
cord-345211-4ivqlsgt	236	68	infected	infect	VBN
cord-345211-4ivqlsgt	236	69	adults	adult	NNS
cord-345211-4ivqlsgt	237	1	Use	use	NN
cord-345211-4ivqlsgt	237	2	of	of	IN
cord-345211-4ivqlsgt	237	3	a	a	DT
cord-345211-4ivqlsgt	237	4	rapid	rapid	JJ
cord-345211-4ivqlsgt	237	5	test	test	NN
cord-345211-4ivqlsgt	237	6	of	of	IN
cord-345211-4ivqlsgt	237	7	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	237	8	colonization	colonization	NN
cord-345211-4ivqlsgt	237	9	density	density	NN
cord-345211-4ivqlsgt	237	10	to	to	TO
cord-345211-4ivqlsgt	237	11	diagnose	diagnose	VB
cord-345211-4ivqlsgt	237	12	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	237	13	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	238	1	•	•	NNP
cord-345211-4ivqlsgt	239	1	The	the	DT
cord-345211-4ivqlsgt	239	2	first	first	JJ
cord-345211-4ivqlsgt	239	3	study	study	NN
cord-345211-4ivqlsgt	239	4	to	to	TO
cord-345211-4ivqlsgt	239	5	demonstrate	demonstrate	VB
cord-345211-4ivqlsgt	239	6	the	the	DT
cord-345211-4ivqlsgt	239	7	potential	potential	JJ
cord-345211-4ivqlsgt	239	8	application	application	NN
cord-345211-4ivqlsgt	239	9	of	of	IN
cord-345211-4ivqlsgt	239	10	nasopharyngeal	nasopharyngeal	JJ
cord-345211-4ivqlsgt	239	11	colonization	colonization	NN
cord-345211-4ivqlsgt	239	12	density	density	NN
cord-345211-4ivqlsgt	239	13	,	,	,
cord-345211-4ivqlsgt	239	14	using	use	VBG
cord-345211-4ivqlsgt	239	15	quantitative	quantitative	JJ
cord-345211-4ivqlsgt	239	16	PCR	PCR	NNP
cord-345211-4ivqlsgt	239	17	,	,	,
cord-345211-4ivqlsgt	239	18	to	to	TO
cord-345211-4ivqlsgt	239	19	diagnose	diagnose	VB
cord-345211-4ivqlsgt	239	20	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	239	21	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	239	22	in	in	IN
cord-345211-4ivqlsgt	239	23	adults	adult	NNS
cord-345211-4ivqlsgt	240	1	Pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	240	2	colonisation	colonisation	NN
cord-345211-4ivqlsgt	240	3	density	density	NN
cord-345211-4ivqlsgt	240	4	:	:	:
cord-345211-4ivqlsgt	240	5	a	a	DT
cord-345211-4ivqlsgt	240	6	new	new	JJ
cord-345211-4ivqlsgt	240	7	marker	marker	NN
cord-345211-4ivqlsgt	240	8	for	for	IN
cord-345211-4ivqlsgt	240	9	disease	disease	NN
cord-345211-4ivqlsgt	240	10	severity	severity	NN
cord-345211-4ivqlsgt	240	11	in	in	IN
cord-345211-4ivqlsgt	240	12	HIV	HIV	NNP
cord-345211-4ivqlsgt	240	13	-	-	HYPH
cord-345211-4ivqlsgt	240	14	infected	infect	VBN
cord-345211-4ivqlsgt	240	15	adults	adult	NNS
cord-345211-4ivqlsgt	240	16	with	with	IN
cord-345211-4ivqlsgt	240	17	pneumonia	pneumonia	NNP
cord-345211-4ivqlsgt	240	18	Association	Association	NNP
cord-345211-4ivqlsgt	240	19	between	between	IN
cord-345211-4ivqlsgt	240	20	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	240	21	load	load	NN
cord-345211-4ivqlsgt	240	22	and	and	CC
cord-345211-4ivqlsgt	240	23	disease	disease	NN
cord-345211-4ivqlsgt	240	24	severity	severity	NN
cord-345211-4ivqlsgt	240	25	in	in	IN
cord-345211-4ivqlsgt	240	26	adults	adult	NNS
cord-345211-4ivqlsgt	240	27	with	with	IN
cord-345211-4ivqlsgt	240	28	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	240	29	Severity	severity	NN
cord-345211-4ivqlsgt	240	30	of	of	IN
cord-345211-4ivqlsgt	240	31	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	240	32	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	240	33	associated	associate	VBN
cord-345211-4ivqlsgt	240	34	with	with	IN
cord-345211-4ivqlsgt	240	35	genomic	genomic	JJ
cord-345211-4ivqlsgt	240	36	bacterial	bacterial	JJ
cord-345211-4ivqlsgt	240	37	load	load	NN
cord-345211-4ivqlsgt	240	38	Classical	Classical	NNP
cord-345211-4ivqlsgt	240	39	and	and	CC
cord-345211-4ivqlsgt	240	40	latent	latent	JJ
cord-345211-4ivqlsgt	240	41	class	class	NN
cord-345211-4ivqlsgt	240	42	analysis	analysis	NN
cord-345211-4ivqlsgt	240	43	evaluation	evaluation	NN
cord-345211-4ivqlsgt	240	44	of	of	IN
cord-345211-4ivqlsgt	240	45	sputum	sputum	NN
cord-345211-4ivqlsgt	240	46	polymerase	polymerase	NN
cord-345211-4ivqlsgt	240	47	chain	chain	NN
cord-345211-4ivqlsgt	240	48	reaction	reaction	NN
cord-345211-4ivqlsgt	240	49	and	and	CC
cord-345211-4ivqlsgt	240	50	urine	urine	NN
cord-345211-4ivqlsgt	240	51	antigen	antigen	NN
cord-345211-4ivqlsgt	240	52	testing	testing	NN
cord-345211-4ivqlsgt	240	53	for	for	IN
cord-345211-4ivqlsgt	240	54	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	240	55	of	of	IN
cord-345211-4ivqlsgt	240	56	pneumococcal	pneumococcal	JJ
cord-345211-4ivqlsgt	240	57	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	240	58	in	in	IN
cord-345211-4ivqlsgt	240	59	adults	adult	NNS
cord-345211-4ivqlsgt	240	60	Estimating	estimate	VBG
cord-345211-4ivqlsgt	240	61	the	the	DT
cord-345211-4ivqlsgt	240	62	proportion	proportion	NN
cord-345211-4ivqlsgt	240	63	of	of	IN
cord-345211-4ivqlsgt	240	64	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	240	65	attributable	attributable	JJ
cord-345211-4ivqlsgt	240	66	to	to	IN
cord-345211-4ivqlsgt	240	67	pneumococcus	pneumococcus	NN
cord-345211-4ivqlsgt	240	68	in	in	IN
cord-345211-4ivqlsgt	240	69	Kenyan	kenyan	JJ
cord-345211-4ivqlsgt	240	70	adults	adult	NNS
cord-345211-4ivqlsgt	240	71	:	:	:
cord-345211-4ivqlsgt	241	1	latent	latent	JJ
cord-345211-4ivqlsgt	241	2	class	class	NN
cord-345211-4ivqlsgt	241	3	analysis	analysis	NN
cord-345211-4ivqlsgt	241	4	Comparison	comparison	NN
cord-345211-4ivqlsgt	241	5	of	of	IN
cord-345211-4ivqlsgt	241	6	TB	TB	NNP
cord-345211-4ivqlsgt	241	7	-	-	HYPH
cord-345211-4ivqlsgt	241	8	LAMP	LAMP	NNP
cord-345211-4ivqlsgt	241	9	,	,	,
cord-345211-4ivqlsgt	241	10	GeneXpert	GeneXpert	NNP
cord-345211-4ivqlsgt	241	11	MTB	MTB	NNP
cord-345211-4ivqlsgt	241	12	/	/	SYM
cord-345211-4ivqlsgt	241	13	RIF	RIF	NNP
cord-345211-4ivqlsgt	241	14	and	and	CC
cord-345211-4ivqlsgt	241	15	culture	culture	NN
cord-345211-4ivqlsgt	241	16	for	for	IN
cord-345211-4ivqlsgt	241	17	diagnosis	diagnosis	NN
cord-345211-4ivqlsgt	241	18	of	of	IN
cord-345211-4ivqlsgt	241	19	pulmonary	pulmonary	JJ
cord-345211-4ivqlsgt	241	20	tuberculosis	tuberculosis	NN
cord-345211-4ivqlsgt	241	21	in	in	IN
cord-345211-4ivqlsgt	241	22	The	the	DT
cord-345211-4ivqlsgt	241	23	Gambia	Gambia	NNP
cord-345211-4ivqlsgt	241	24	A	a	DT
cord-345211-4ivqlsgt	241	25	Bayesian	bayesian	JJ
cord-345211-4ivqlsgt	241	26	framework	framework	NN
cord-345211-4ivqlsgt	241	27	for	for	IN
cord-345211-4ivqlsgt	241	28	estimating	estimate	VBG
cord-345211-4ivqlsgt	241	29	the	the	DT
cord-345211-4ivqlsgt	241	30	incremental	incremental	JJ
cord-345211-4ivqlsgt	241	31	value	value	NN
cord-345211-4ivqlsgt	241	32	of	of	IN
cord-345211-4ivqlsgt	241	33	a	a	DT
cord-345211-4ivqlsgt	241	34	diagnostic	diagnostic	JJ
cord-345211-4ivqlsgt	241	35	test	test	NN
cord-345211-4ivqlsgt	241	36	in	in	IN
cord-345211-4ivqlsgt	241	37	the	the	DT
cord-345211-4ivqlsgt	241	38	absence	absence	NN
cord-345211-4ivqlsgt	241	39	of	of	IN
cord-345211-4ivqlsgt	241	40	a	a	DT
cord-345211-4ivqlsgt	241	41	gold	gold	NN
cord-345211-4ivqlsgt	241	42	standard	standard	NN
cord-345211-4ivqlsgt	242	1	The	the	DT
cord-345211-4ivqlsgt	242	2	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	242	3	etiology	etiology	NN
cord-345211-4ivqlsgt	242	4	research	research	NN
cord-345211-4ivqlsgt	242	5	for	for	IN
cord-345211-4ivqlsgt	242	6	child	child	NN
cord-345211-4ivqlsgt	242	7	health	health	NN
cord-345211-4ivqlsgt	242	8	project	project	NN
cord-345211-4ivqlsgt	242	9	:	:	:
cord-345211-4ivqlsgt	243	1	A	a	DT
cord-345211-4ivqlsgt	243	2	21st	21st	JJ
cord-345211-4ivqlsgt	243	3	century	century	NN
cord-345211-4ivqlsgt	243	4	childhood	childhood	NN
cord-345211-4ivqlsgt	243	5	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	243	6	etiology	etiology	NN
cord-345211-4ivqlsgt	243	7	study	study	NN
cord-345211-4ivqlsgt	244	1	The	the	DT
cord-345211-4ivqlsgt	244	2	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	244	3	etiology	etiology	NN
cord-345211-4ivqlsgt	244	4	research	research	NN
cord-345211-4ivqlsgt	244	5	for	for	IN
cord-345211-4ivqlsgt	244	6	child	child	NN
cord-345211-4ivqlsgt	244	7	health	health	NN
cord-345211-4ivqlsgt	244	8	core	core	NN
cord-345211-4ivqlsgt	244	9	team	team	NN
cord-345211-4ivqlsgt	244	10	.	.	.
cord-345211-4ivqlsgt	245	1	Partially	partially	RB
cord-345211-4ivqlsgt	245	2	latent	latent	JJ
cord-345211-4ivqlsgt	245	3	class	class	NN
cord-345211-4ivqlsgt	245	4	models	model	NNS
cord-345211-4ivqlsgt	245	5	for	for	IN
cord-345211-4ivqlsgt	245	6	case	case	NN
cord-345211-4ivqlsgt	245	7	-	-	HYPH
cord-345211-4ivqlsgt	245	8	control	control	NN
cord-345211-4ivqlsgt	245	9	studies	study	NNS
cord-345211-4ivqlsgt	245	10	of	of	IN
cord-345211-4ivqlsgt	245	11	childhood	childhood	NN
cord-345211-4ivqlsgt	245	12	pneumonia	pneumonia	NN
cord-345211-4ivqlsgt	245	13	aetiology	aetiology	NN