id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-277687-u3q36o3e	Shean, Ryan C.	VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank	2019-01-23		.txt	text/plain	4071	212	49	title: VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank In order to accept submitted viral genomic data, NCBI GenBank requires 1) viral sequence complete with at least one protein annotation, 2) author/depositor metadata, and 3) viral sequence metadata, such as strain, collection date, collection location, and coverage. VAPiD handles batch submissions of multiple viruses of different types without prior knowledge of the viral species, correctly annotates RNA editing and ribosomal slippage, performs spellchecking on annotations, handles batch or individual submission of metadata, runs with a simple one-line command, and creates annotated viral sequence files for GenBank submission. This first example is the task that the authors originally wrote VAPiD for -annotating large numbers of genomes from different viral species, which mirrors the type of data that many clinical and public health laboratories may encounter.	./cache/cord-277687-u3q36o3e.txt	./txt/cord-277687-u3q36o3e.txt