id	sid	tid	token	lemma	pos
cord-321150-ev6acl7b	1	1	key	key	NN
cord-321150-ev6acl7b	1	2	:	:	:
cord-321150-ev6acl7b	1	3	cord-321150-ev6acl7b	cord-321150-ev6acl7b	.
cord-321150-ev6acl7b	2	1	authors	author	NNS
cord-321150-ev6acl7b	2	2	:	:	:
cord-321150-ev6acl7b	3	1	Lam	Lam	NNP
cord-321150-ev6acl7b	3	2	,	,	,
cord-321150-ev6acl7b	3	3	Ha	Ha	NNP
cord-321150-ev6acl7b	3	4	Minh	Minh	NNP
cord-321150-ev6acl7b	3	5	;	;	:
cord-321150-ev6acl7b	3	6	Ratmann	Ratmann	NNP
cord-321150-ev6acl7b	3	7	,	,	,
cord-321150-ev6acl7b	3	8	Oliver	Oliver	NNP
cord-321150-ev6acl7b	3	9	;	;	:
cord-321150-ev6acl7b	3	10	Boni	Boni	NNP
cord-321150-ev6acl7b	3	11	,	,	,
cord-321150-ev6acl7b	3	12	Maciej	Maciej	NNP
cord-321150-ev6acl7b	3	13	F	F	NNP
cord-321150-ev6acl7b	3	14	title	title	NN
cord-321150-ev6acl7b	3	15	:	:	:
cord-321150-ev6acl7b	3	16	Improved	Improved	NNP
cord-321150-ev6acl7b	3	17	Algorithmic	Algorithmic	NNP
cord-321150-ev6acl7b	3	18	Complexity	Complexity	NNP
cord-321150-ev6acl7b	3	19	for	for	IN
cord-321150-ev6acl7b	3	20	the	the	DT
cord-321150-ev6acl7b	3	21	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	3	22	Recombination	Recombination	NNP
cord-321150-ev6acl7b	3	23	Detection	Detection	NNP
cord-321150-ev6acl7b	3	24	Algorithm	Algorithm	NNP
cord-321150-ev6acl7b	3	25	date	date	NN
cord-321150-ev6acl7b	3	26	:	:	:
cord-321150-ev6acl7b	3	27	2017	2017	CD
cord-321150-ev6acl7b	3	28	-	-	SYM
cord-321150-ev6acl7b	3	29	10	10	CD
cord-321150-ev6acl7b	3	30	-	-	HYPH
cord-321150-ev6acl7b	3	31	03	03	CD
cord-321150-ev6acl7b	3	32	journal	journal	NN
cord-321150-ev6acl7b	3	33	:	:	:
cord-321150-ev6acl7b	4	1	Mol	Mol	NNP
cord-321150-ev6acl7b	4	2	Biol	Biol	NNP
cord-321150-ev6acl7b	4	3	Evol	Evol	NNP
cord-321150-ev6acl7b	4	4	DOI	DOI	NNP
cord-321150-ev6acl7b	4	5	:	:	:
cord-321150-ev6acl7b	4	6	10.1093	10.1093	CD
cord-321150-ev6acl7b	4	7	/	/	SYM
cord-321150-ev6acl7b	4	8	molbev	molbev	NN
cord-321150-ev6acl7b	4	9	/	/	SYM
cord-321150-ev6acl7b	4	10	msx263	msx263	NNP
cord-321150-ev6acl7b	4	11	sha	sha	NNP
cord-321150-ev6acl7b	4	12	:	:	:
cord-321150-ev6acl7b	4	13	517698251b94fac6d80edcc4644e2448a4efd4ef	517698251b94fac6d80edcc4644e2448a4efd4ef	NNP
cord-321150-ev6acl7b	4	14	doc_id	doc_id	CD
cord-321150-ev6acl7b	4	15	:	:	:
cord-321150-ev6acl7b	4	16	321150	321150	CD
cord-321150-ev6acl7b	4	17	cord_uid	cord_uid	NNS
cord-321150-ev6acl7b	4	18	:	:	:
cord-321150-ev6acl7b	4	19	ev6acl7b	ev6acl7b	JJ
cord-321150-ev6acl7b	5	1	Identifying	identify	VBG
cord-321150-ev6acl7b	5	2	recombinant	recombinant	JJ
cord-321150-ev6acl7b	5	3	sequences	sequence	NNS
cord-321150-ev6acl7b	5	4	in	in	IN
cord-321150-ev6acl7b	5	5	an	an	DT
cord-321150-ev6acl7b	5	6	era	era	NN
cord-321150-ev6acl7b	5	7	of	of	IN
cord-321150-ev6acl7b	5	8	large	large	JJ
cord-321150-ev6acl7b	5	9	genomic	genomic	JJ
cord-321150-ev6acl7b	5	10	databases	database	NNS
cord-321150-ev6acl7b	5	11	is	be	VBZ
cord-321150-ev6acl7b	5	12	challenging	challenging	JJ
cord-321150-ev6acl7b	5	13	as	as	IN
cord-321150-ev6acl7b	5	14	it	-PRON-	PRP
cord-321150-ev6acl7b	5	15	requires	require	VBZ
cord-321150-ev6acl7b	5	16	an	an	DT
cord-321150-ev6acl7b	5	17	efficient	efficient	JJ
cord-321150-ev6acl7b	5	18	algorithm	algorithm	NN
cord-321150-ev6acl7b	5	19	to	to	TO
cord-321150-ev6acl7b	5	20	identify	identify	VB
cord-321150-ev6acl7b	5	21	candidate	candidate	NN
cord-321150-ev6acl7b	5	22	recombinants	recombinant	NNS
cord-321150-ev6acl7b	5	23	and	and	CC
cord-321150-ev6acl7b	5	24	parents	parent	NNS
cord-321150-ev6acl7b	5	25	,	,	,
cord-321150-ev6acl7b	5	26	as	as	RB
cord-321150-ev6acl7b	5	27	well	well	RB
cord-321150-ev6acl7b	5	28	as	as	IN
cord-321150-ev6acl7b	5	29	appropriate	appropriate	JJ
cord-321150-ev6acl7b	5	30	statistical	statistical	JJ
cord-321150-ev6acl7b	5	31	methods	method	NNS
cord-321150-ev6acl7b	5	32	to	to	TO
cord-321150-ev6acl7b	5	33	correct	correct	VB
cord-321150-ev6acl7b	5	34	for	for	IN
cord-321150-ev6acl7b	5	35	the	the	DT
cord-321150-ev6acl7b	5	36	large	large	JJ
cord-321150-ev6acl7b	5	37	number	number	NN
cord-321150-ev6acl7b	5	38	of	of	IN
cord-321150-ev6acl7b	5	39	comparisons	comparison	NNS
cord-321150-ev6acl7b	5	40	performed	perform	VBN
cord-321150-ev6acl7b	5	41	.	.	.
cord-321150-ev6acl7b	6	1	In	in	IN
cord-321150-ev6acl7b	6	2	2007	2007	CD
cord-321150-ev6acl7b	6	3	,	,	,
cord-321150-ev6acl7b	6	4	a	a	DT
cord-321150-ev6acl7b	6	5	computation	computation	NN
cord-321150-ev6acl7b	6	6	was	be	VBD
cord-321150-ev6acl7b	6	7	introduced	introduce	VBN
cord-321150-ev6acl7b	6	8	for	for	IN
cord-321150-ev6acl7b	6	9	an	an	DT
cord-321150-ev6acl7b	6	10	exact	exact	JJ
cord-321150-ev6acl7b	6	11	nonparametric	nonparametric	JJ
cord-321150-ev6acl7b	6	12	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	6	13	statistic	statistic	NN
cord-321150-ev6acl7b	6	14	that	that	WDT
cord-321150-ev6acl7b	6	15	gave	give	VBD
cord-321150-ev6acl7b	6	16	high	high	JJ
cord-321150-ev6acl7b	6	17	-	-	HYPH
cord-321150-ev6acl7b	6	18	precision	precision	NN
cord-321150-ev6acl7b	6	19	P	p	NN
cord-321150-ev6acl7b	6	20	values	value	NNS
cord-321150-ev6acl7b	6	21	for	for	IN
cord-321150-ev6acl7b	6	22	putative	putative	JJ
cord-321150-ev6acl7b	6	23	recombinants	recombinant	NNS
cord-321150-ev6acl7b	6	24	.	.	.
cord-321150-ev6acl7b	7	1	This	this	DT
cord-321150-ev6acl7b	7	2	exact	exact	JJ
cord-321150-ev6acl7b	7	3	computation	computation	NN
cord-321150-ev6acl7b	7	4	meant	mean	VBD
cord-321150-ev6acl7b	7	5	that	that	IN
cord-321150-ev6acl7b	7	6	multiple	multiple	JJ
cord-321150-ev6acl7b	7	7	-	-	HYPH
cord-321150-ev6acl7b	7	8	comparisons	comparison	NNS
cord-321150-ev6acl7b	7	9	corrected	correct	VBD
cord-321150-ev6acl7b	7	10	P	p	NN
cord-321150-ev6acl7b	7	11	values	value	NNS
cord-321150-ev6acl7b	7	12	also	also	RB
cord-321150-ev6acl7b	7	13	had	have	VBD
cord-321150-ev6acl7b	7	14	high	high	JJ
cord-321150-ev6acl7b	7	15	precision	precision	NN
cord-321150-ev6acl7b	7	16	,	,	,
cord-321150-ev6acl7b	7	17	which	which	WDT
cord-321150-ev6acl7b	7	18	is	be	VBZ
cord-321150-ev6acl7b	7	19	crucial	crucial	JJ
cord-321150-ev6acl7b	7	20	when	when	WRB
cord-321150-ev6acl7b	7	21	performing	perform	VBG
cord-321150-ev6acl7b	7	22	millions	million	NNS
cord-321150-ev6acl7b	7	23	or	or	CC
cord-321150-ev6acl7b	7	24	billions	billion	NNS
cord-321150-ev6acl7b	7	25	of	of	IN
cord-321150-ev6acl7b	7	26	tests	test	NNS
cord-321150-ev6acl7b	7	27	in	in	IN
cord-321150-ev6acl7b	7	28	large	large	JJ
cord-321150-ev6acl7b	7	29	databases	database	NNS
cord-321150-ev6acl7b	7	30	.	.	.
cord-321150-ev6acl7b	8	1	Here	here	RB
cord-321150-ev6acl7b	8	2	,	,	,
cord-321150-ev6acl7b	8	3	we	-PRON-	PRP
cord-321150-ev6acl7b	8	4	introduce	introduce	VBP
cord-321150-ev6acl7b	8	5	an	an	DT
cord-321150-ev6acl7b	8	6	improvement	improvement	NN
cord-321150-ev6acl7b	8	7	to	to	IN
cord-321150-ev6acl7b	8	8	the	the	DT
cord-321150-ev6acl7b	8	9	algorithmic	algorithmic	JJ
cord-321150-ev6acl7b	8	10	complexity	complexity	NN
cord-321150-ev6acl7b	8	11	of	of	IN
cord-321150-ev6acl7b	8	12	this	this	DT
cord-321150-ev6acl7b	8	13	computation	computation	NN
cord-321150-ev6acl7b	8	14	from	from	IN
cord-321150-ev6acl7b	8	15	O(mn(3	O(mn(3	NNP
cord-321150-ev6acl7b	8	16	)	)	-RRB-
cord-321150-ev6acl7b	8	17	)	)	-RRB-
cord-321150-ev6acl7b	8	18	to	to	IN
cord-321150-ev6acl7b	8	19	O(mn(2	O(mn(2	NNP
cord-321150-ev6acl7b	8	20	)	)	-RRB-
cord-321150-ev6acl7b	8	21	)	)	-RRB-
cord-321150-ev6acl7b	8	22	,	,	,
cord-321150-ev6acl7b	8	23	where	where	WRB
cord-321150-ev6acl7b	8	24	m	m	NNP
cord-321150-ev6acl7b	8	25	and	and	CC
cord-321150-ev6acl7b	8	26	n	n	NNP
cord-321150-ev6acl7b	8	27	are	be	VBP
cord-321150-ev6acl7b	8	28	the	the	DT
cord-321150-ev6acl7b	8	29	numbers	number	NNS
cord-321150-ev6acl7b	8	30	of	of	IN
cord-321150-ev6acl7b	8	31	recombination	recombination	NN
cord-321150-ev6acl7b	8	32	-	-	HYPH
cord-321150-ev6acl7b	8	33	informative	informative	JJ
cord-321150-ev6acl7b	8	34	sites	site	NNS
cord-321150-ev6acl7b	8	35	in	in	IN
cord-321150-ev6acl7b	8	36	the	the	DT
cord-321150-ev6acl7b	8	37	candidate	candidate	NN
cord-321150-ev6acl7b	8	38	recombinant	recombinant	JJ
cord-321150-ev6acl7b	8	39	.	.	.
cord-321150-ev6acl7b	9	1	This	this	DT
cord-321150-ev6acl7b	9	2	new	new	JJ
cord-321150-ev6acl7b	9	3	computation	computation	NN
cord-321150-ev6acl7b	9	4	allows	allow	VBZ
cord-321150-ev6acl7b	9	5	for	for	IN
cord-321150-ev6acl7b	9	6	recombination	recombination	NN
cord-321150-ev6acl7b	9	7	analysis	analysis	NN
cord-321150-ev6acl7b	9	8	to	to	TO
cord-321150-ev6acl7b	9	9	be	be	VB
cord-321150-ev6acl7b	9	10	performed	perform	VBN
cord-321150-ev6acl7b	9	11	in	in	IN
cord-321150-ev6acl7b	9	12	alignments	alignment	NNS
cord-321150-ev6acl7b	9	13	with	with	IN
cord-321150-ev6acl7b	9	14	thousands	thousand	NNS
cord-321150-ev6acl7b	9	15	of	of	IN
cord-321150-ev6acl7b	9	16	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	9	17	sites	site	NNS
cord-321150-ev6acl7b	9	18	.	.	.
cord-321150-ev6acl7b	10	1	Benchmark	benchmark	NN
cord-321150-ev6acl7b	10	2	runs	run	NNS
cord-321150-ev6acl7b	10	3	are	be	VBP
cord-321150-ev6acl7b	10	4	presented	present	VBN
cord-321150-ev6acl7b	10	5	on	on	IN
cord-321150-ev6acl7b	10	6	viral	viral	JJ
cord-321150-ev6acl7b	10	7	genome	genome	NN
cord-321150-ev6acl7b	10	8	sequence	sequence	NN
cord-321150-ev6acl7b	10	9	alignments	alignment	NNS
cord-321150-ev6acl7b	10	10	,	,	,
cord-321150-ev6acl7b	10	11	new	new	JJ
cord-321150-ev6acl7b	10	12	features	feature	NNS
cord-321150-ev6acl7b	10	13	are	be	VBP
cord-321150-ev6acl7b	10	14	introduced	introduce	VBN
cord-321150-ev6acl7b	10	15	,	,	,
cord-321150-ev6acl7b	10	16	and	and	CC
cord-321150-ev6acl7b	10	17	applications	application	NNS
cord-321150-ev6acl7b	10	18	outside	outside	IN
cord-321150-ev6acl7b	10	19	recombination	recombination	NN
cord-321150-ev6acl7b	10	20	analysis	analysis	NN
cord-321150-ev6acl7b	10	21	are	be	VBP
cord-321150-ev6acl7b	10	22	discussed	discuss	VBN
cord-321150-ev6acl7b	10	23	.	.	.
cord-321150-ev6acl7b	11	1	Determining	determine	VBG
cord-321150-ev6acl7b	11	2	whether	whether	IN
cord-321150-ev6acl7b	11	3	genomic	genomic	JJ
cord-321150-ev6acl7b	11	4	regions	region	NNS
cord-321150-ev6acl7b	11	5	are	be	VBP
cord-321150-ev6acl7b	11	6	undergoing	undergo	VBG
cord-321150-ev6acl7b	11	7	homologous	homologous	JJ
cord-321150-ev6acl7b	11	8	recombination	recombination	NN
cord-321150-ev6acl7b	11	9	is	be	VBZ
cord-321150-ev6acl7b	11	10	important	important	JJ
cord-321150-ev6acl7b	11	11	in	in	IN
cord-321150-ev6acl7b	11	12	all	all	DT
cord-321150-ev6acl7b	11	13	parts	part	NNS
cord-321150-ev6acl7b	11	14	of	of	IN
cord-321150-ev6acl7b	11	15	biology	biology	NN
cord-321150-ev6acl7b	11	16	and	and	CC
cord-321150-ev6acl7b	11	17	genetics	genetic	NNS
cord-321150-ev6acl7b	11	18	.	.	.
cord-321150-ev6acl7b	12	1	Indeed	indeed	RB
cord-321150-ev6acl7b	12	2	,	,	,
cord-321150-ev6acl7b	12	3	recombination	recombination	NN
cord-321150-ev6acl7b	12	4	has	have	VBZ
cord-321150-ev6acl7b	12	5	profound	profound	JJ
cord-321150-ev6acl7b	12	6	consequences	consequence	NNS
cord-321150-ev6acl7b	12	7	for	for	IN
cord-321150-ev6acl7b	12	8	a	a	DT
cord-321150-ev6acl7b	12	9	population	population	NN
cord-321150-ev6acl7b	12	10	's	's	POS
cord-321150-ev6acl7b	12	11	evolutionary	evolutionary	JJ
cord-321150-ev6acl7b	12	12	trajectory	trajectory	NN
cord-321150-ev6acl7b	12	13	,	,	,
cord-321150-ev6acl7b	12	14	and	and	CC
cord-321150-ev6acl7b	12	15	it	-PRON-	PRP
cord-321150-ev6acl7b	12	16	changes	change	VBZ
cord-321150-ev6acl7b	12	17	our	-PRON-	PRP$
cord-321150-ev6acl7b	12	18	understanding	understanding	NN
cord-321150-ev6acl7b	12	19	of	of	IN
cord-321150-ev6acl7b	12	20	the	the	DT
cord-321150-ev6acl7b	12	21	evolutionary	evolutionary	JJ
cord-321150-ev6acl7b	12	22	history	history	NN
cord-321150-ev6acl7b	12	23	of	of	IN
cord-321150-ev6acl7b	12	24	a	a	DT
cord-321150-ev6acl7b	12	25	population	population	NN
cord-321150-ev6acl7b	12	26	as	as	IN
cord-321150-ev6acl7b	12	27	described	describe	VBN
cord-321150-ev6acl7b	12	28	through	through	IN
cord-321150-ev6acl7b	12	29	phylogenetics	phylogenetic	NNS
cord-321150-ev6acl7b	12	30	(	(	-LRB-
cord-321150-ev6acl7b	12	31	Schierup	Schierup	NNP
cord-321150-ev6acl7b	12	32	and	and	CC
cord-321150-ev6acl7b	12	33	Hein	Hein	NNP
cord-321150-ev6acl7b	12	34	2000	2000	CD
cord-321150-ev6acl7b	12	35	;	;	:
cord-321150-ev6acl7b	12	36	.	.	.
cord-321150-ev6acl7b	13	1	Identifying	identify	VBG
cord-321150-ev6acl7b	13	2	recombination	recombination	NN
cord-321150-ev6acl7b	13	3	is	be	VBZ
cord-321150-ev6acl7b	13	4	especially	especially	RB
cord-321150-ev6acl7b	13	5	important	important	JJ
cord-321150-ev6acl7b	13	6	in	in	IN
cord-321150-ev6acl7b	13	7	large	large	JJ
cord-321150-ev6acl7b	13	8	genomic	genomic	JJ
cord-321150-ev6acl7b	13	9	analyses	analysis	NNS
cord-321150-ev6acl7b	13	10	,	,	,
cord-321150-ev6acl7b	13	11	as	as	IN
cord-321150-ev6acl7b	13	12	the	the	DT
cord-321150-ev6acl7b	13	13	larger	large	JJR
cord-321150-ev6acl7b	13	14	the	the	DT
cord-321150-ev6acl7b	13	15	region	region	NN
cord-321150-ev6acl7b	13	16	being	be	VBG
cord-321150-ev6acl7b	13	17	analyzed	analyze	VBN
cord-321150-ev6acl7b	13	18	the	the	DT
cord-321150-ev6acl7b	13	19	higher	high	JJR
cord-321150-ev6acl7b	13	20	the	the	DT
cord-321150-ev6acl7b	13	21	chance	chance	NN
cord-321150-ev6acl7b	13	22	that	that	IN
cord-321150-ev6acl7b	13	23	recombination	recombination	NN
cord-321150-ev6acl7b	13	24	will	will	MD
cord-321150-ev6acl7b	13	25	be	be	VB
cord-321150-ev6acl7b	13	26	detected	detect	VBN
cord-321150-ev6acl7b	13	27	even	even	RB
cord-321150-ev6acl7b	13	28	in	in	IN
cord-321150-ev6acl7b	13	29	a	a	DT
cord-321150-ev6acl7b	13	30	small	small	JJ
cord-321150-ev6acl7b	13	31	sample	sample	NN
cord-321150-ev6acl7b	13	32	.	.	.
cord-321150-ev6acl7b	14	1	Over	over	IN
cord-321150-ev6acl7b	14	2	the	the	DT
cord-321150-ev6acl7b	14	3	past	past	JJ
cord-321150-ev6acl7b	14	4	three	three	CD
cord-321150-ev6acl7b	14	5	decades	decade	NNS
cord-321150-ev6acl7b	14	6	,	,	,
cord-321150-ev6acl7b	14	7	methods	method	NNS
cord-321150-ev6acl7b	14	8	of	of	IN
cord-321150-ev6acl7b	14	9	identifying	identify	VBG
cord-321150-ev6acl7b	14	10	recombination	recombination	NN
cord-321150-ev6acl7b	14	11	from	from	IN
cord-321150-ev6acl7b	14	12	sequence	sequence	NN
cord-321150-ev6acl7b	14	13	data	datum	NNS
cord-321150-ev6acl7b	14	14	have	have	VBP
cord-321150-ev6acl7b	14	15	focused	focus	VBN
cord-321150-ev6acl7b	14	16	on	on	IN
cord-321150-ev6acl7b	14	17	detection	detection	NN
cord-321150-ev6acl7b	14	18	of	of	IN
cord-321150-ev6acl7b	14	19	clustered	clustered	JJ
cord-321150-ev6acl7b	14	20	polymorphism	polymorphism	NN
cord-321150-ev6acl7b	14	21	,	,	,
cord-321150-ev6acl7b	14	22	excessive	excessive	JJ
cord-321150-ev6acl7b	14	23	homoplasy	homoplasy	NN
cord-321150-ev6acl7b	14	24	,	,	,
cord-321150-ev6acl7b	14	25	low	low	JJ
cord-321150-ev6acl7b	14	26	linkage	linkage	NN
cord-321150-ev6acl7b	14	27	disequilibrium	disequilibrium	NN
cord-321150-ev6acl7b	14	28	,	,	,
cord-321150-ev6acl7b	14	29	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	14	30	,	,	,
cord-321150-ev6acl7b	14	31	and	and	CC
cord-321150-ev6acl7b	14	32	incongruent	incongruent	JJ
cord-321150-ev6acl7b	14	33	phylogenies	phylogeny	NNS
cord-321150-ev6acl7b	14	34	.	.	.
cord-321150-ev6acl7b	15	1	Some	some	DT
cord-321150-ev6acl7b	15	2	of	of	IN
cord-321150-ev6acl7b	15	3	these	these	DT
cord-321150-ev6acl7b	15	4	statistical	statistical	JJ
cord-321150-ev6acl7b	15	5	signals	signal	NNS
cord-321150-ev6acl7b	15	6	have	have	VBP
cord-321150-ev6acl7b	15	7	advantages	advantage	NNS
cord-321150-ev6acl7b	15	8	over	over	IN
cord-321150-ev6acl7b	15	9	others	other	NNS
cord-321150-ev6acl7b	15	10	in	in	IN
cord-321150-ev6acl7b	15	11	terms	term	NNS
cord-321150-ev6acl7b	15	12	of	of	IN
cord-321150-ev6acl7b	15	13	false	false	JJ
cord-321150-ev6acl7b	15	14	positive	positive	JJ
cord-321150-ev6acl7b	15	15	rate	rate	NN
cord-321150-ev6acl7b	15	16	,	,	,
cord-321150-ev6acl7b	15	17	statistical	statistical	JJ
cord-321150-ev6acl7b	15	18	power	power	NN
cord-321150-ev6acl7b	15	19	,	,	,
cord-321150-ev6acl7b	15	20	speed	speed	NN
cord-321150-ev6acl7b	15	21	,	,	,
cord-321150-ev6acl7b	15	22	and	and	CC
cord-321150-ev6acl7b	15	23	the	the	DT
cord-321150-ev6acl7b	15	24	size	size	NN
cord-321150-ev6acl7b	15	25	of	of	IN
cord-321150-ev6acl7b	15	26	the	the	DT
cord-321150-ev6acl7b	15	27	data	datum	NNS
cord-321150-ev6acl7b	15	28	set	set	NN
cord-321150-ev6acl7b	15	29	that	that	WDT
cord-321150-ev6acl7b	15	30	can	can	MD
cord-321150-ev6acl7b	15	31	be	be	VB
cord-321150-ev6acl7b	15	32	analyzed	analyze	VBN
cord-321150-ev6acl7b	15	33	.	.	.
cord-321150-ev6acl7b	16	1	An	an	DT
cord-321150-ev6acl7b	16	2	analysis	analysis	NN
cord-321150-ev6acl7b	16	3	of	of	IN
cord-321150-ev6acl7b	16	4	sensitivity	sensitivity	NN
cord-321150-ev6acl7b	16	5	and	and	CC
cord-321150-ev6acl7b	16	6	specificity	specificity	NN
cord-321150-ev6acl7b	16	7	can	can	MD
cord-321150-ev6acl7b	16	8	be	be	VB
cord-321150-ev6acl7b	16	9	found	find	VBN
cord-321150-ev6acl7b	16	10	in	in	IN
cord-321150-ev6acl7b	16	11	Posada	Posada	NNP
cord-321150-ev6acl7b	16	12	and	and	CC
cord-321150-ev6acl7b	16	13	Crandall	Crandall	NNP
cord-321150-ev6acl7b	16	14	(	(	-LRB-
cord-321150-ev6acl7b	16	15	Posada	Posada	NNP
cord-321150-ev6acl7b	16	16	and	and	CC
cord-321150-ev6acl7b	16	17	Crandall	Crandall	NNP
cord-321150-ev6acl7b	16	18	2001	2001	CD
cord-321150-ev6acl7b	16	19	)	)	-RRB-
cord-321150-ev6acl7b	16	20	and	and	CC
cord-321150-ev6acl7b	16	21	a	a	DT
cord-321150-ev6acl7b	16	22	guide	guide	NN
cord-321150-ev6acl7b	16	23	to	to	IN
cord-321150-ev6acl7b	16	24	choosing	choose	VBG
cord-321150-ev6acl7b	16	25	an	an	DT
cord-321150-ev6acl7b	16	26	appropriate	appropriate	JJ
cord-321150-ev6acl7b	16	27	method	method	NN
cord-321150-ev6acl7b	16	28	for	for	IN
cord-321150-ev6acl7b	16	29	a	a	DT
cord-321150-ev6acl7b	16	30	given	give	VBN
cord-321150-ev6acl7b	16	31	data	data	NN
cord-321150-ev6acl7b	16	32	set	set	NN
cord-321150-ev6acl7b	16	33	can	can	MD
cord-321150-ev6acl7b	16	34	be	be	VB
cord-321150-ev6acl7b	16	35	found	find	VBN
cord-321150-ev6acl7b	16	36	in	in	IN
cord-321150-ev6acl7b	16	37	Martin	Martin	NNP
cord-321150-ev6acl7b	16	38	et	et	NNP
cord-321150-ev6acl7b	16	39	al	al	NNP
cord-321150-ev6acl7b	16	40	.	.	.
cord-321150-ev6acl7b	17	1	(	(	-LRB-
cord-321150-ev6acl7b	17	2	2011	2011	CD
cord-321150-ev6acl7b	17	3	)	)	-RRB-
cord-321150-ev6acl7b	17	4	.	.	.
cord-321150-ev6acl7b	18	1	In	in	IN
cord-321150-ev6acl7b	18	2	modern	modern	JJ
cord-321150-ev6acl7b	18	3	sequence	sequence	NN
cord-321150-ev6acl7b	18	4	analysis	analysis	NN
cord-321150-ev6acl7b	18	5	,	,	,
cord-321150-ev6acl7b	18	6	a	a	DT
cord-321150-ev6acl7b	18	7	major	major	JJ
cord-321150-ev6acl7b	18	8	challenge	challenge	NN
cord-321150-ev6acl7b	18	9	in	in	IN
cord-321150-ev6acl7b	18	10	recombination	recombination	NN
cord-321150-ev6acl7b	18	11	detection	detection	NN
cord-321150-ev6acl7b	18	12	is	be	VBZ
cord-321150-ev6acl7b	18	13	the	the	DT
cord-321150-ev6acl7b	18	14	size	size	NN
cord-321150-ev6acl7b	18	15	of	of	IN
cord-321150-ev6acl7b	18	16	the	the	DT
cord-321150-ev6acl7b	18	17	data	data	NN
cord-321150-ev6acl7b	18	18	sets	set	VBZ
cord-321150-ev6acl7b	18	19	themselves	-PRON-	PRP
cord-321150-ev6acl7b	18	20	.	.	.
cord-321150-ev6acl7b	19	1	Beyond	beyond	IN
cord-321150-ev6acl7b	19	2	the	the	DT
cord-321150-ev6acl7b	19	3	computational	computational	JJ
cord-321150-ev6acl7b	19	4	burden	burden	NN
cord-321150-ev6acl7b	19	5	,	,	,
cord-321150-ev6acl7b	19	6	critical	critical	JJ
cord-321150-ev6acl7b	19	7	but	but	CC
cord-321150-ev6acl7b	19	8	often	often	RB
cord-321150-ev6acl7b	19	9	underappreciated	underappreciated	JJ
cord-321150-ev6acl7b	19	10	statistical	statistical	JJ
cord-321150-ev6acl7b	19	11	issues	issue	NNS
cord-321150-ev6acl7b	19	12	arise	arise	VBP
cord-321150-ev6acl7b	19	13	through	through	IN
cord-321150-ev6acl7b	19	14	the	the	DT
cord-321150-ev6acl7b	19	15	extremely	extremely	RB
cord-321150-ev6acl7b	19	16	large	large	JJ
cord-321150-ev6acl7b	19	17	number	number	NN
cord-321150-ev6acl7b	19	18	of	of	IN
cord-321150-ev6acl7b	19	19	compared	compare	VBN
cord-321150-ev6acl7b	19	20	nucleotide	nucleotide	JJ
cord-321150-ev6acl7b	19	21	sequence	sequence	NN
cord-321150-ev6acl7b	19	22	patterns	pattern	NNS
cord-321150-ev6acl7b	19	23	.	.	.
cord-321150-ev6acl7b	20	1	With	with	IN
cord-321150-ev6acl7b	20	2	this	this	DT
cord-321150-ev6acl7b	20	3	many	many	JJ
cord-321150-ev6acl7b	20	4	comparisons	comparison	NNS
cord-321150-ev6acl7b	20	5	being	be	VBG
cord-321150-ev6acl7b	20	6	performed	perform	VBN
cord-321150-ev6acl7b	20	7	,	,	,
cord-321150-ev6acl7b	20	8	truly	truly	RB
cord-321150-ev6acl7b	20	9	nonrecombinant	nonrecombinant	NN
cord-321150-ev6acl7b	20	10	sequences	sequence	NNS
cord-321150-ev6acl7b	20	11	can	can	MD
cord-321150-ev6acl7b	20	12	exhibit	exhibit	VB
cord-321150-ev6acl7b	20	13	nucleotide	nucleotide	JJ
cord-321150-ev6acl7b	20	14	patterns	pattern	NNS
cord-321150-ev6acl7b	20	15	that	that	WDT
cord-321150-ev6acl7b	20	16	appear	appear	VBP
cord-321150-ev6acl7b	20	17	recombinant	recombinant	JJ
cord-321150-ev6acl7b	20	18	by	by	IN
cord-321150-ev6acl7b	20	19	chance	chance	NN
cord-321150-ev6acl7b	20	20	.	.	.
cord-321150-ev6acl7b	21	1	For	for	IN
cord-321150-ev6acl7b	21	2	this	this	DT
cord-321150-ev6acl7b	21	3	reason	reason	NN
cord-321150-ev6acl7b	21	4	,	,	,
cord-321150-ev6acl7b	21	5	statistical	statistical	JJ
cord-321150-ev6acl7b	21	6	corrections	correction	NNS
cord-321150-ev6acl7b	21	7	for	for	IN
cord-321150-ev6acl7b	21	8	multiple	multiple	JJ
cord-321150-ev6acl7b	21	9	comparisons	comparison	NNS
cord-321150-ev6acl7b	21	10	are	be	VBP
cord-321150-ev6acl7b	21	11	essential	essential	JJ
cord-321150-ev6acl7b	21	12	to	to	TO
cord-321150-ev6acl7b	21	13	guard	guard	VB
cord-321150-ev6acl7b	21	14	against	against	IN
cord-321150-ev6acl7b	21	15	calling	call	VBG
cord-321150-ev6acl7b	21	16	spurious	spurious	JJ
cord-321150-ev6acl7b	21	17	recombinants	recombinant	NNS
cord-321150-ev6acl7b	21	18	.	.	.
cord-321150-ev6acl7b	22	1	In	in	IN
cord-321150-ev6acl7b	22	2	an	an	DT
cord-321150-ev6acl7b	22	3	algorithm	algorithm	NN
cord-321150-ev6acl7b	22	4	called	call	VBN
cord-321150-ev6acl7b	22	5	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	22	6	,	,	,
cord-321150-ev6acl7b	22	7	Boni	Boni	NNP
cord-321150-ev6acl7b	22	8	et	et	FW
cord-321150-ev6acl7b	22	9	al	al	NNP
cord-321150-ev6acl7b	22	10	.	.	.
cord-321150-ev6acl7b	23	1	(	(	-LRB-
cord-321150-ev6acl7b	23	2	2007	2007	CD
cord-321150-ev6acl7b	23	3	)	)	-RRB-
cord-321150-ev6acl7b	23	4	presented	present	VBD
cord-321150-ev6acl7b	23	5	an	an	DT
cord-321150-ev6acl7b	23	6	exact	exact	JJ
cord-321150-ev6acl7b	23	7	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	23	8	statistic	statistic	NN
cord-321150-ev6acl7b	23	9	for	for	IN
cord-321150-ev6acl7b	23	10	calling	call	VBG
cord-321150-ev6acl7b	23	11	recombinants	recombinant	NNS
cord-321150-ev6acl7b	23	12	.	.	.
cord-321150-ev6acl7b	24	1	Critically	critically	RB
cord-321150-ev6acl7b	24	2	,	,	,
cord-321150-ev6acl7b	24	3	the	the	DT
cord-321150-ev6acl7b	24	4	exactness	exactness	NN
cord-321150-ev6acl7b	24	5	of	of	IN
cord-321150-ev6acl7b	24	6	the	the	DT
cord-321150-ev6acl7b	24	7	computation	computation	NN
cord-321150-ev6acl7b	24	8	(	(	-LRB-
cord-321150-ev6acl7b	24	9	e.g.	e.g.	RB
cord-321150-ev6acl7b	24	10	,	,	,
cord-321150-ev6acl7b	24	11	calculating	calculate	VBG
cord-321150-ev6acl7b	24	12	P	p	NN
cord-321150-ev6acl7b	24	13	values	value	NNS
cord-321150-ev6acl7b	24	14	to	to	IN
cord-321150-ev6acl7b	24	15	a	a	DT
cord-321150-ev6acl7b	24	16	precision	precision	NN
cord-321150-ev6acl7b	24	17	of	of	IN
cord-321150-ev6acl7b	24	18	10	10	CD
cord-321150-ev6acl7b	24	19	À20	À20	NNP
cord-321150-ev6acl7b	24	20	or	or	CC
cord-321150-ev6acl7b	24	21	10	10	CD
cord-321150-ev6acl7b	24	22	À30	À30	NNP
cord-321150-ev6acl7b	24	23	)	)	-RRB-
cord-321150-ev6acl7b	24	24	allows	allow	VBZ
cord-321150-ev6acl7b	24	25	these	these	DT
cord-321150-ev6acl7b	24	26	mosaic	mosaic	JJ
cord-321150-ev6acl7b	24	27	signals	signal	NNS
cord-321150-ev6acl7b	24	28	to	to	TO
cord-321150-ev6acl7b	24	29	remain	remain	VB
cord-321150-ev6acl7b	24	30	statistically	statistically	RB
cord-321150-ev6acl7b	24	31	significant	significant	JJ
cord-321150-ev6acl7b	24	32	,	,	,
cord-321150-ev6acl7b	24	33	even	even	RB
cord-321150-ev6acl7b	24	34	when	when	WRB
cord-321150-ev6acl7b	24	35	billions	billion	NNS
cord-321150-ev6acl7b	24	36	of	of	IN
cord-321150-ev6acl7b	24	37	comparisons	comparison	NNS
cord-321150-ev6acl7b	24	38	are	be	VBP
cord-321150-ev6acl7b	24	39	being	be	VBG
cord-321150-ev6acl7b	24	40	performed	perform	VBN
cord-321150-ev6acl7b	24	41	and	and	CC
cord-321150-ev6acl7b	24	42	adjusted	adjust	VBN
cord-321150-ev6acl7b	24	43	for	for	IN
cord-321150-ev6acl7b	24	44	multiple	multiple	JJ
cord-321150-ev6acl7b	24	45	comparison	comparison	NN
cord-321150-ev6acl7b	24	46	.	.	.
cord-321150-ev6acl7b	25	1	This	this	DT
cord-321150-ev6acl7b	25	2	means	mean	VBZ
cord-321150-ev6acl7b	25	3	that	that	IN
cord-321150-ev6acl7b	25	4	the	the	DT
cord-321150-ev6acl7b	25	5	exact	exact	JJ
cord-321150-ev6acl7b	25	6	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	25	7	statistic	statistic	NN
cord-321150-ev6acl7b	25	8	implemented	implement	VBN
cord-321150-ev6acl7b	25	9	in	in	IN
cord-321150-ev6acl7b	25	10	the	the	DT
cord-321150-ev6acl7b	25	11	3SEQ	3seq	CD
cord-321150-ev6acl7b	25	12	software	software	NN
cord-321150-ev6acl7b	25	13	maintains	maintain	VBZ
cord-321150-ev6acl7b	25	14	good	good	JJ
cord-321150-ev6acl7b	25	15	power	power	NN
cord-321150-ev6acl7b	25	16	properties	property	NNS
cord-321150-ev6acl7b	25	17	even	even	RB
cord-321150-ev6acl7b	25	18	on	on	IN
cord-321150-ev6acl7b	25	19	large	large	JJ
cord-321150-ev6acl7b	25	20	data	data	NN
cord-321150-ev6acl7b	25	21	sets	set	NNS
cord-321150-ev6acl7b	25	22	when	when	WRB
cord-321150-ev6acl7b	25	23	statistical	statistical	JJ
cord-321150-ev6acl7b	25	24	correction	correction	NN
cord-321150-ev6acl7b	25	25	factors	factor	NNS
cord-321150-ev6acl7b	25	26	for	for	IN
cord-321150-ev6acl7b	25	27	multiple	multiple	JJ
cord-321150-ev6acl7b	25	28	comparisons	comparison	NNS
cord-321150-ev6acl7b	25	29	are	be	VBP
cord-321150-ev6acl7b	25	30	on	on	IN
cord-321150-ev6acl7b	25	31	the	the	DT
cord-321150-ev6acl7b	25	32	order	order	NN
cord-321150-ev6acl7b	25	33	of	of	IN
cord-321150-ev6acl7b	25	34	10	10	CD
cord-321150-ev6acl7b	25	35	10	10	CD
cord-321150-ev6acl7b	25	36	or	or	CC
cord-321150-ev6acl7b	25	37	more	more	JJR
cord-321150-ev6acl7b	25	38	.	.	.
cord-321150-ev6acl7b	26	1	Recombination	recombination	NN
cord-321150-ev6acl7b	26	2	detection	detection	NN
cord-321150-ev6acl7b	26	3	methods	method	NNS
cord-321150-ev6acl7b	26	4	that	that	WDT
cord-321150-ev6acl7b	26	5	detect	detect	VBP
cord-321150-ev6acl7b	26	6	mosaic	mosaic	JJ
cord-321150-ev6acl7b	26	7	signals	signal	NNS
cord-321150-ev6acl7b	26	8	always	always	RB
cord-321150-ev6acl7b	26	9	take	take	VBP
cord-321150-ev6acl7b	26	10	a	a	DT
cord-321150-ev6acl7b	26	11	triplet	triplet	NN
cord-321150-ev6acl7b	26	12	approach	approach	NN
cord-321150-ev6acl7b	26	13	or	or	CC
cord-321150-ev6acl7b	26	14	a	a	DT
cord-321150-ev6acl7b	26	15	quartet	quartet	NN
cord-321150-ev6acl7b	26	16	approach	approach	NN
cord-321150-ev6acl7b	26	17	,	,	,
cord-321150-ev6acl7b	26	18	positing	posit	VBG
cord-321150-ev6acl7b	26	19	one	one	CD
cord-321150-ev6acl7b	26	20	sequence	sequence	NN
cord-321150-ev6acl7b	26	21	as	as	IN
cord-321150-ev6acl7b	26	22	the	the	DT
cord-321150-ev6acl7b	26	23	candidate	candidate	NN
cord-321150-ev6acl7b	26	24	recombinant	recombinant	JJ
cord-321150-ev6acl7b	26	25	,	,	,
cord-321150-ev6acl7b	26	26	two	two	CD
cord-321150-ev6acl7b	26	27	sequences	sequence	NNS
cord-321150-ev6acl7b	26	28	as	as	IN
cord-321150-ev6acl7b	26	29	the	the	DT
cord-321150-ev6acl7b	26	30	parents	parent	NNS
cord-321150-ev6acl7b	26	31	,	,	,
cord-321150-ev6acl7b	26	32	and	and	CC
cord-321150-ev6acl7b	26	33	possibly	possibly	RB
cord-321150-ev6acl7b	26	34	a	a	DT
cord-321150-ev6acl7b	26	35	fourth	fourth	JJ
cord-321150-ev6acl7b	26	36	sequence	sequence	NN
cord-321150-ev6acl7b	26	37	as	as	IN
cord-321150-ev6acl7b	26	38	an	an	DT
cord-321150-ev6acl7b	26	39	outgroup	outgroup	NN
cord-321150-ev6acl7b	26	40	.	.	.
cord-321150-ev6acl7b	27	1	With	with	IN
cord-321150-ev6acl7b	27	2	the	the	DT
cord-321150-ev6acl7b	27	3	parental	parental	JJ
cord-321150-ev6acl7b	27	4	sequences	sequence	NNS
cord-321150-ev6acl7b	27	5	labeled	label	VBD
cord-321150-ev6acl7b	27	6	P	P	NNP
cord-321150-ev6acl7b	27	7	and	and	CC
cord-321150-ev6acl7b	27	8	Q	Q	NNP
cord-321150-ev6acl7b	27	9	and	and	CC
cord-321150-ev6acl7b	27	10	the	the	DT
cord-321150-ev6acl7b	27	11	candidate	candidate	NN
cord-321150-ev6acl7b	27	12	recombinant	recombinant	NN
cord-321150-ev6acl7b	27	13	labeled	label	VBN
cord-321150-ev6acl7b	27	14	C	C	NNP
cord-321150-ev6acl7b	27	15	,	,	,
cord-321150-ev6acl7b	27	16	these	these	DT
cord-321150-ev6acl7b	27	17	methods	method	NNS
cord-321150-ev6acl7b	27	18	normally	normally	RB
cord-321150-ev6acl7b	27	19	use	use	VBP
cord-321150-ev6acl7b	27	20	"	"	``
cord-321150-ev6acl7b	27	21	recombination	recombination	NN
cord-321150-ev6acl7b	27	22	informative	informative	JJ
cord-321150-ev6acl7b	27	23	"	"	''
cord-321150-ev6acl7b	27	24	sites	site	NNS
cord-321150-ev6acl7b	27	25	,	,	,
cord-321150-ev6acl7b	27	26	or	or	CC
cord-321150-ev6acl7b	27	27	simply	simply	RB
cord-321150-ev6acl7b	27	28	informative	informative	JJ
cord-321150-ev6acl7b	27	29	sites	site	NNS
cord-321150-ev6acl7b	27	30	,	,	,
cord-321150-ev6acl7b	27	31	to	to	TO
cord-321150-ev6acl7b	27	32	determine	determine	VB
cord-321150-ev6acl7b	27	33	if	if	IN
cord-321150-ev6acl7b	27	34	C	C	NNP
cord-321150-ev6acl7b	27	35	is	be	VBZ
cord-321150-ev6acl7b	27	36	a	a	DT
cord-321150-ev6acl7b	27	37	mosaic	mosaic	NN
cord-321150-ev6acl7b	27	38	of	of	IN
cord-321150-ev6acl7b	27	39	P	p	NN
cord-321150-ev6acl7b	27	40	and	and	CC
cord-321150-ev6acl7b	27	41	Q.	Q.	NNP
cord-321150-ev6acl7b	28	1	In	in	IN
cord-321150-ev6acl7b	28	2	3SEQ	3seq	CD
cord-321150-ev6acl7b	28	3	,	,	,
cord-321150-ev6acl7b	28	4	nucleotide	nucleotide	JJ
cord-321150-ev6acl7b	28	5	positions	position	NNS
cord-321150-ev6acl7b	28	6	on	on	IN
cord-321150-ev6acl7b	28	7	C	C	NNP
cord-321150-ev6acl7b	28	8	are	be	VBP
cord-321150-ev6acl7b	28	9	labeled	label	VBN
cord-321150-ev6acl7b	28	10	informative	informative	JJ
cord-321150-ev6acl7b	28	11	if	if	IN
cord-321150-ev6acl7b	28	12	the	the	DT
cord-321150-ev6acl7b	28	13	nucleotide	nucleotide	NN
cord-321150-ev6acl7b	28	14	in	in	IN
cord-321150-ev6acl7b	28	15	C	C	NNP
cord-321150-ev6acl7b	28	16	is	be	VBZ
cord-321150-ev6acl7b	28	17	identical	identical	JJ
cord-321150-ev6acl7b	28	18	to	to	IN
cord-321150-ev6acl7b	28	19	one	one	CD
cord-321150-ev6acl7b	28	20	parental	parental	JJ
cord-321150-ev6acl7b	28	21	sequence	sequence	NN
cord-321150-ev6acl7b	28	22	but	but	CC
cord-321150-ev6acl7b	28	23	different	different	JJ
cord-321150-ev6acl7b	28	24	from	from	IN
cord-321150-ev6acl7b	28	25	the	the	DT
cord-321150-ev6acl7b	28	26	other	other	JJ
cord-321150-ev6acl7b	28	27	.	.	.
cord-321150-ev6acl7b	29	1	If	if	IN
cord-321150-ev6acl7b	29	2	the	the	DT
cord-321150-ev6acl7b	29	3	sequence	sequence	NN
cord-321150-ev6acl7b	29	4	of	of	IN
cord-321150-ev6acl7b	29	5	m	m	CD
cord-321150-ev6acl7b	29	6	informative	informative	JJ
cord-321150-ev6acl7b	29	7	sites	site	NNS
cord-321150-ev6acl7b	29	8	identical	identical	JJ
cord-321150-ev6acl7b	29	9	to	to	IN
cord-321150-ev6acl7b	29	10	P	p	NN
cord-321150-ev6acl7b	29	11	and	and	CC
cord-321150-ev6acl7b	29	12	n	n	CC
cord-321150-ev6acl7b	29	13	informative	informative	JJ
cord-321150-ev6acl7b	29	14	sites	site	NNS
cord-321150-ev6acl7b	29	15	identical	identical	JJ
cord-321150-ev6acl7b	29	16	to	to	IN
cord-321150-ev6acl7b	29	17	Q	Q	NNP
cord-321150-ev6acl7b	29	18	appears	appear	VBZ
cord-321150-ev6acl7b	29	19	nonrandom	nonrandom	JJ
cord-321150-ev6acl7b	29	20	or	or	CC
cord-321150-ev6acl7b	29	21	clustered	cluster	VBN
cord-321150-ev6acl7b	29	22	,	,	,
cord-321150-ev6acl7b	29	23	this	this	DT
cord-321150-ev6acl7b	29	24	is	be	VBZ
cord-321150-ev6acl7b	29	25	an	an	DT
cord-321150-ev6acl7b	29	26	indication	indication	NN
cord-321150-ev6acl7b	29	27	that	that	IN
cord-321150-ev6acl7b	29	28	Letter	letter	NN
cord-321150-ev6acl7b	29	29	ß	ß	NN
cord-321150-ev6acl7b	30	1	The	the	DT
cord-321150-ev6acl7b	30	2	Author	Author	NNP
cord-321150-ev6acl7b	30	3	2017	2017	CD
cord-321150-ev6acl7b	30	4	.	.	.
cord-321150-ev6acl7b	31	1	Published	publish	VBN
cord-321150-ev6acl7b	31	2	by	by	IN
cord-321150-ev6acl7b	31	3	Oxford	Oxford	NNP
cord-321150-ev6acl7b	31	4	University	University	NNP
cord-321150-ev6acl7b	31	5	Press	Press	NNP
cord-321150-ev6acl7b	31	6	on	on	IN
cord-321150-ev6acl7b	31	7	behalf	behalf	NN
cord-321150-ev6acl7b	31	8	of	of	IN
cord-321150-ev6acl7b	31	9	the	the	DT
cord-321150-ev6acl7b	31	10	Society	Society	NNP
cord-321150-ev6acl7b	31	11	for	for	IN
cord-321150-ev6acl7b	31	12	Molecular	Molecular	NNP
cord-321150-ev6acl7b	31	13	Biology	Biology	NNP
cord-321150-ev6acl7b	31	14	and	and	CC
cord-321150-ev6acl7b	31	15	Evolution	Evolution	NNP
cord-321150-ev6acl7b	31	16	.	.	.
cord-321150-ev6acl7b	32	1	This	this	DT
cord-321150-ev6acl7b	32	2	is	be	VBZ
cord-321150-ev6acl7b	32	3	an	an	DT
cord-321150-ev6acl7b	32	4	Open	Open	NNP
cord-321150-ev6acl7b	32	5	Access	Access	NNP
cord-321150-ev6acl7b	32	6	article	article	NN
cord-321150-ev6acl7b	32	7	distributed	distribute	VBN
cord-321150-ev6acl7b	32	8	under	under	IN
cord-321150-ev6acl7b	32	9	the	the	DT
cord-321150-ev6acl7b	32	10	terms	term	NNS
cord-321150-ev6acl7b	32	11	of	of	IN
cord-321150-ev6acl7b	32	12	the	the	DT
cord-321150-ev6acl7b	32	13	Creative	Creative	NNP
cord-321150-ev6acl7b	32	14	Commons	Commons	NNP
cord-321150-ev6acl7b	32	15	Attribution	Attribution	NNP
cord-321150-ev6acl7b	32	16	Non	Non	NNP
cord-321150-ev6acl7b	32	17	-	-	JJ
cord-321150-ev6acl7b	32	18	Commercial	commercial	JJ
cord-321150-ev6acl7b	32	19	License	license	NN
cord-321150-ev6acl7b	32	20	(	(	-LRB-
cord-321150-ev6acl7b	32	21	http://creativecommons.org/licenses/by-nc/4.0/	http://creativecommons.org/licenses/by-nc/4.0/	NNP
cord-321150-ev6acl7b	32	22	)	)	-RRB-
cord-321150-ev6acl7b	32	23	,	,	,
cord-321150-ev6acl7b	32	24	which	which	WDT
cord-321150-ev6acl7b	32	25	permits	permit	VBZ
cord-321150-ev6acl7b	32	26	non	non	JJ
cord-321150-ev6acl7b	32	27	-	-	JJ
cord-321150-ev6acl7b	32	28	commercial	commercial	JJ
cord-321150-ev6acl7b	32	29	re	re	NN
cord-321150-ev6acl7b	32	30	-	-	NN
cord-321150-ev6acl7b	32	31	use	use	JJ
cord-321150-ev6acl7b	32	32	,	,	,
cord-321150-ev6acl7b	32	33	distribution	distribution	NN
cord-321150-ev6acl7b	32	34	,	,	,
cord-321150-ev6acl7b	32	35	and	and	CC
cord-321150-ev6acl7b	32	36	reproduction	reproduction	NN
cord-321150-ev6acl7b	32	37	in	in	IN
cord-321150-ev6acl7b	32	38	any	any	DT
cord-321150-ev6acl7b	32	39	medium	medium	NN
cord-321150-ev6acl7b	32	40	,	,	,
cord-321150-ev6acl7b	32	41	provided	provide	VBD
cord-321150-ev6acl7b	32	42	the	the	DT
cord-321150-ev6acl7b	32	43	original	original	JJ
cord-321150-ev6acl7b	32	44	work	work	NN
cord-321150-ev6acl7b	32	45	is	be	VBZ
cord-321150-ev6acl7b	32	46	properly	properly	RB
cord-321150-ev6acl7b	32	47	cited	cite	VBN
cord-321150-ev6acl7b	32	48	.	.	.
cord-321150-ev6acl7b	33	1	For	for	IN
cord-321150-ev6acl7b	33	2	commercial	commercial	JJ
cord-321150-ev6acl7b	33	3	re	re	NN
cord-321150-ev6acl7b	33	4	-	-	NN
cord-321150-ev6acl7b	33	5	use	use	NN
cord-321150-ev6acl7b	33	6	,	,	,
cord-321150-ev6acl7b	33	7	please	please	UH
cord-321150-ev6acl7b	33	8	contact	contact	NN
cord-321150-ev6acl7b	33	9	journals.permissions@oup.com	journals.permissions@oup.com	NNP
cord-321150-ev6acl7b	33	10	Open	Open	NNP
cord-321150-ev6acl7b	33	11	Access	Access	NNP
cord-321150-ev6acl7b	33	12	recombination	recombination	NN
cord-321150-ev6acl7b	33	13	may	may	MD
cord-321150-ev6acl7b	33	14	have	have	VB
cord-321150-ev6acl7b	33	15	occurred	occur	VBN
cord-321150-ev6acl7b	33	16	.	.	.
cord-321150-ev6acl7b	34	1	When	when	WRB
cord-321150-ev6acl7b	34	2	read	read	VBN
cord-321150-ev6acl7b	34	3	from	from	IN
cord-321150-ev6acl7b	34	4	left	leave	VBN
cord-321150-ev6acl7b	34	5	to	to	IN
cord-321150-ev6acl7b	34	6	right	right	RB
cord-321150-ev6acl7b	34	7	along	along	IN
cord-321150-ev6acl7b	34	8	the	the	DT
cord-321150-ev6acl7b	34	9	sequence	sequence	NN
cord-321150-ev6acl7b	34	10	,	,	,
cord-321150-ev6acl7b	34	11	the	the	DT
cord-321150-ev6acl7b	34	12	informative	informative	JJ
cord-321150-ev6acl7b	34	13	sites	site	NNS
cord-321150-ev6acl7b	34	14	can	can	MD
cord-321150-ev6acl7b	34	15	be	be	VB
cord-321150-ev6acl7b	34	16	used	use	VBN
cord-321150-ev6acl7b	34	17	to	to	TO
cord-321150-ev6acl7b	34	18	draw	draw	VB
cord-321150-ev6acl7b	34	19	a	a	DT
cord-321150-ev6acl7b	34	20	random	random	JJ
cord-321150-ev6acl7b	34	21	walk	walk	NN
cord-321150-ev6acl7b	34	22	on	on	IN
cord-321150-ev6acl7b	34	23	a	a	DT
cord-321150-ev6acl7b	34	24	set	set	NN
cord-321150-ev6acl7b	34	25	of	of	IN
cord-321150-ev6acl7b	34	26	axes	axis	NNS
cord-321150-ev6acl7b	34	27	with	with	IN
cord-321150-ev6acl7b	34	28	m	m	NNP
cord-321150-ev6acl7b	34	29	up	up	RB
cord-321150-ev6acl7b	34	30	-	-	HYPH
cord-321150-ev6acl7b	34	31	steps	step	NNS
cord-321150-ev6acl7b	34	32	and	and	CC
cord-321150-ev6acl7b	34	33	n	n	CC
cord-321150-ev6acl7b	34	34	down	down	RB
cord-321150-ev6acl7b	34	35	-	-	HYPH
cord-321150-ev6acl7b	34	36	steps	step	NNS
cord-321150-ev6acl7b	34	37	;	;	:
cord-321150-ev6acl7b	34	38	this	this	DT
cord-321150-ev6acl7b	34	39	is	be	VBZ
cord-321150-ev6acl7b	34	40	called	call	VBN
cord-321150-ev6acl7b	34	41	a	a	DT
cord-321150-ev6acl7b	34	42	hypergeometric	hypergeometric	JJ
cord-321150-ev6acl7b	34	43	random	random	JJ
cord-321150-ev6acl7b	34	44	walk	walk	NN
cord-321150-ev6acl7b	34	45	(	(	-LRB-
cord-321150-ev6acl7b	34	46	HGRW	HGRW	NNP
cord-321150-ev6acl7b	34	47	)	)	-RRB-
cord-321150-ev6acl7b	34	48	.	.	.
cord-321150-ev6acl7b	35	1	A	a	DT
cord-321150-ev6acl7b	35	2	strong	strong	JJ
cord-321150-ev6acl7b	35	3	descent	descent	NN
cord-321150-ev6acl7b	35	4	or	or	CC
cord-321150-ev6acl7b	35	5	ascent	ascent	NN
cord-321150-ev6acl7b	35	6	in	in	IN
cord-321150-ev6acl7b	35	7	the	the	DT
cord-321150-ev6acl7b	35	8	middle	middle	NN
cord-321150-ev6acl7b	35	9	of	of	IN
cord-321150-ev6acl7b	35	10	a	a	DT
cord-321150-ev6acl7b	35	11	HGRW	HGRW	NNP
cord-321150-ev6acl7b	35	12	indicates	indicate	VBZ
cord-321150-ev6acl7b	35	13	that	that	IN
cord-321150-ev6acl7b	35	14	one	one	CD
cord-321150-ev6acl7b	35	15	type	type	NN
cord-321150-ev6acl7b	35	16	of	of	IN
cord-321150-ev6acl7b	35	17	informative	informative	JJ
cord-321150-ev6acl7b	35	18	site	site	NN
cord-321150-ev6acl7b	35	19	exhibits	exhibit	VBZ
cord-321150-ev6acl7b	35	20	clustering	clustering	NN
cord-321150-ev6acl7b	35	21	,	,	,
cord-321150-ev6acl7b	35	22	and	and	CC
cord-321150-ev6acl7b	35	23	the	the	DT
cord-321150-ev6acl7b	35	24	properties	property	NNS
cord-321150-ev6acl7b	35	25	of	of	IN
cord-321150-ev6acl7b	35	26	the	the	DT
cord-321150-ev6acl7b	35	27	random	random	JJ
cord-321150-ev6acl7b	35	28	walk	walk	NN
cord-321150-ev6acl7b	35	29	can	can	MD
cord-321150-ev6acl7b	35	30	be	be	VB
cord-321150-ev6acl7b	35	31	used	use	VBN
cord-321150-ev6acl7b	35	32	to	to	TO
cord-321150-ev6acl7b	35	33	compute	compute	VB
cord-321150-ev6acl7b	35	34	exact	exact	JJ
cord-321150-ev6acl7b	35	35	probabilities	probability	NNS
cord-321150-ev6acl7b	35	36	of	of	IN
cord-321150-ev6acl7b	35	37	this	this	DT
cord-321150-ev6acl7b	35	38	occurring	occurring	NN
cord-321150-ev6acl7b	35	39	.	.	.
cord-321150-ev6acl7b	36	1	See	see	VB
cord-321150-ev6acl7b	36	2	figure	figure	NN
cord-321150-ev6acl7b	36	3	1	1	CD
cord-321150-ev6acl7b	36	4	for	for	IN
cord-321150-ev6acl7b	36	5	an	an	DT
cord-321150-ev6acl7b	36	6	example	example	NN
cord-321150-ev6acl7b	36	7	.	.	.
cord-321150-ev6acl7b	37	1	In	in	IN
cord-321150-ev6acl7b	37	2	this	this	DT
cord-321150-ev6acl7b	37	3	letter	letter	NN
cord-321150-ev6acl7b	37	4	,	,	,
cord-321150-ev6acl7b	37	5	we	-PRON-	PRP
cord-321150-ev6acl7b	37	6	present	present	VBP
cord-321150-ev6acl7b	37	7	a	a	DT
cord-321150-ev6acl7b	37	8	new	new	JJ
cord-321150-ev6acl7b	37	9	and	and	CC
cord-321150-ev6acl7b	37	10	faster	fast	JJR
cord-321150-ev6acl7b	37	11	method	method	NN
cord-321150-ev6acl7b	37	12	of	of	IN
cord-321150-ev6acl7b	37	13	computing	compute	VBG
cord-321150-ev6acl7b	37	14	these	these	DT
cord-321150-ev6acl7b	37	15	probabilities	probability	NNS
cord-321150-ev6acl7b	37	16	.	.	.
cord-321150-ev6acl7b	38	1	The	the	DT
cord-321150-ev6acl7b	38	2	central	central	JJ
cord-321150-ev6acl7b	38	3	feature	feature	NN
cord-321150-ev6acl7b	38	4	of	of	IN
cord-321150-ev6acl7b	38	5	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	38	6	was	be	VBD
cord-321150-ev6acl7b	38	7	a	a	DT
cord-321150-ev6acl7b	38	8	reduction	reduction	NN
cord-321150-ev6acl7b	38	9	of	of	IN
cord-321150-ev6acl7b	38	10	an	an	DT
cord-321150-ev6acl7b	38	11	O(2	O(2	NNP
cord-321150-ev6acl7b	38	12	mþn	mþn	NN
cord-321150-ev6acl7b	38	13	)	)	-RRB-
cord-321150-ev6acl7b	38	14	space	space	NN
cord-321150-ev6acl7b	38	15	-	-	HYPH
cord-321150-ev6acl7b	38	16	complexity	complexity	NN
cord-321150-ev6acl7b	38	17	problem	problem	NN
cord-321150-ev6acl7b	38	18	into	into	IN
cord-321150-ev6acl7b	38	19	an	an	DT
cord-321150-ev6acl7b	38	20	O(mn	o(mn	NN
cord-321150-ev6acl7b	38	21	3	3	CD
cord-321150-ev6acl7b	38	22	)	)	-RRB-
cord-321150-ev6acl7b	38	23	problem	problem	NN
cord-321150-ev6acl7b	38	24	,	,	,
cord-321150-ev6acl7b	38	25	for	for	IN
cord-321150-ev6acl7b	38	26	computing	compute	VBG
cord-321150-ev6acl7b	38	27	the	the	DT
cord-321150-ev6acl7b	38	28	probability	probability	NN
cord-321150-ev6acl7b	38	29	x	x	SYM
cord-321150-ev6acl7b	38	30	m	m	NNP
cord-321150-ev6acl7b	38	31	,	,	,
cord-321150-ev6acl7b	38	32	n	n	NNP
cord-321150-ev6acl7b	38	33	,	,	,
cord-321150-ev6acl7b	38	34	k	k	NNP
cord-321150-ev6acl7b	38	35	that	that	IN
cord-321150-ev6acl7b	38	36	a	a	DT
cord-321150-ev6acl7b	38	37	HGRW	HGRW	NNP
cord-321150-ev6acl7b	38	38	with	with	IN
cord-321150-ev6acl7b	38	39	m	m	NNP
cord-321150-ev6acl7b	38	40	up	up	RB
cord-321150-ev6acl7b	38	41	-	-	HYPH
cord-321150-ev6acl7b	38	42	steps	step	NNS
cord-321150-ev6acl7b	38	43	and	and	CC
cord-321150-ev6acl7b	38	44	n	n	CC
cord-321150-ev6acl7b	38	45	down	down	RB
cord-321150-ev6acl7b	38	46	-	-	HYPH
cord-321150-ev6acl7b	38	47	steps	step	NNS
cord-321150-ev6acl7b	38	48	achieves	achieve	VBZ
cord-321150-ev6acl7b	38	49	a	a	DT
cord-321150-ev6acl7b	38	50	maximum	maximum	JJ
cord-321150-ev6acl7b	38	51	descent	descent	NN
cord-321150-ev6acl7b	38	52	of	of	IN
cord-321150-ev6acl7b	38	53	size	size	NN
cord-321150-ev6acl7b	38	54	k	k	NNP
cord-321150-ev6acl7b	38	55	exactly	exactly	RB
cord-321150-ev6acl7b	38	56	.	.	.
cord-321150-ev6acl7b	39	1	The	the	DT
cord-321150-ev6acl7b	39	2	descent	descent	NN
cord-321150-ev6acl7b	39	3	does	do	VBZ
cord-321150-ev6acl7b	39	4	not	not	RB
cord-321150-ev6acl7b	39	5	need	need	VB
cord-321150-ev6acl7b	39	6	to	to	TO
cord-321150-ev6acl7b	39	7	be	be	VB
cord-321150-ev6acl7b	39	8	k	k	XX
cord-321150-ev6acl7b	39	9	consecutive	consecutive	JJ
cord-321150-ev6acl7b	39	10	down	down	JJ
cord-321150-ev6acl7b	39	11	steps	step	NNS
cord-321150-ev6acl7b	39	12	.	.	.
cord-321150-ev6acl7b	40	1	The	the	DT
cord-321150-ev6acl7b	40	2	computations	computation	NNS
cord-321150-ev6acl7b	40	3	were	be	VBD
cord-321150-ev6acl7b	40	4	done	do	VBN
cord-321150-ev6acl7b	40	5	via	via	IN
cord-321150-ev6acl7b	40	6	auxiliary	auxiliary	JJ
cord-321150-ev6acl7b	40	7	variables	variable	NNS
cord-321150-ev6acl7b	41	1	y	y	NNP
cord-321150-ev6acl7b	41	2	m	m	NNP
cord-321150-ev6acl7b	41	3	,	,	,
cord-321150-ev6acl7b	41	4	n	n	NNP
cord-321150-ev6acl7b	41	5	,	,	,
cord-321150-ev6acl7b	41	6	k	k	NNP
cord-321150-ev6acl7b	41	7	,	,	,
cord-321150-ev6acl7b	41	8	j	j	NNP
cord-321150-ev6acl7b	41	9	:	:	:
cord-321150-ev6acl7b	42	1	the	the	DT
cord-321150-ev6acl7b	42	2	probability	probability	NN
cord-321150-ev6acl7b	42	3	that	that	IN
cord-321150-ev6acl7b	42	4	a	a	DT
cord-321150-ev6acl7b	42	5	HGRW	HGRW	NNP
cord-321150-ev6acl7b	42	6	with	with	IN
cord-321150-ev6acl7b	42	7	m	m	NNP
cord-321150-ev6acl7b	42	8	up	up	RB
cord-321150-ev6acl7b	42	9	-	-	HYPH
cord-321150-ev6acl7b	42	10	steps	step	NNS
cord-321150-ev6acl7b	42	11	and	and	CC
cord-321150-ev6acl7b	42	12	n	n	CC
cord-321150-ev6acl7b	42	13	down	down	RB
cord-321150-ev6acl7b	42	14	-	-	HYPH
cord-321150-ev6acl7b	42	15	steps	step	NNS
cord-321150-ev6acl7b	42	16	achieves	achieve	VBZ
cord-321150-ev6acl7b	42	17	a	a	DT
cord-321150-ev6acl7b	42	18	maximum	maximum	JJ
cord-321150-ev6acl7b	42	19	descent	descent	NN
cord-321150-ev6acl7b	42	20	of	of	IN
cord-321150-ev6acl7b	42	21	size	size	NN
cord-321150-ev6acl7b	42	22	k	k	NNP
cord-321150-ev6acl7b	42	23	exactly	exactly	RB
cord-321150-ev6acl7b	42	24	and	and	CC
cord-321150-ev6acl7b	42	25	the	the	DT
cord-321150-ev6acl7b	42	26	minimum	minimum	JJ
cord-321150-ev6acl7b	42	27	value	value	NN
cord-321150-ev6acl7b	42	28	achieved	achieve	VBN
cord-321150-ev6acl7b	42	29	by	by	IN
cord-321150-ev6acl7b	42	30	the	the	DT
cord-321150-ev6acl7b	42	31	random	random	JJ
cord-321150-ev6acl7b	42	32	walk	walk	NN
cord-321150-ev6acl7b	42	33	is	be	VBZ
cord-321150-ev6acl7b	42	34	exactly	exactly	RB
cord-321150-ev6acl7b	42	35	j	j	NNP
cord-321150-ev6acl7b	42	36	units	unit	NNS
cord-321150-ev6acl7b	42	37	below	below	IN
cord-321150-ev6acl7b	42	38	the	the	DT
cord-321150-ev6acl7b	42	39	origin	origin	NN
cord-321150-ev6acl7b	42	40	.	.	.
cord-321150-ev6acl7b	43	1	The	the	DT
cord-321150-ev6acl7b	43	2	y	y	NN
cord-321150-ev6acl7b	43	3	-	-	HYPH
cord-321150-ev6acl7b	43	4	variables	variable	NNS
cord-321150-ev6acl7b	43	5	can	can	MD
cord-321150-ev6acl7b	43	6	be	be	VB
cord-321150-ev6acl7b	43	7	computed	compute	VBN
cord-321150-ev6acl7b	43	8	recursively	recursively	RB
cord-321150-ev6acl7b	43	9	(	(	-LRB-
cord-321150-ev6acl7b	43	10	Boni	boni	FW
cord-321150-ev6acl7b	43	11	et	et	FW
cord-321150-ev6acl7b	43	12	al	al	NNP
cord-321150-ev6acl7b	43	13	.	.	NNP
cord-321150-ev6acl7b	43	14	2007	2007	CD
cord-321150-ev6acl7b	43	15	)	)	-RRB-
cord-321150-ev6acl7b	43	16	by	by	IN
cord-321150-ev6acl7b	43	17	building	build	VBG
cord-321150-ev6acl7b	43	18	a	a	DT
cord-321150-ev6acl7b	43	19	table	table	NN
cord-321150-ev6acl7b	43	20	of	of	IN
cord-321150-ev6acl7b	43	21	size	size	NN
cord-321150-ev6acl7b	43	22	mn	mn	NNP
cord-321150-ev6acl7b	43	23	3	3	CD
cord-321150-ev6acl7b	43	24	.	.	.
cord-321150-ev6acl7b	44	1	The	the	DT
cord-321150-ev6acl7b	44	2	x	x	NNS
cord-321150-ev6acl7b	44	3	-	-	NNS
cord-321150-ev6acl7b	44	4	variables	variable	NNS
cord-321150-ev6acl7b	44	5	are	be	VBP
cord-321150-ev6acl7b	44	6	then	then	RB
cord-321150-ev6acl7b	44	7	computed	compute	VBN
cord-321150-ev6acl7b	44	8	as	as	IN
cord-321150-ev6acl7b	44	9	follows	follow	VBZ
cord-321150-ev6acl7b	44	10	:	:	:
cord-321150-ev6acl7b	44	11	By	by	IN
cord-321150-ev6acl7b	44	12	separating	separate	VBG
cord-321150-ev6acl7b	44	13	out	out	RP
cord-321150-ev6acl7b	44	14	the	the	DT
cord-321150-ev6acl7b	44	15	first	first	JJ
cord-321150-ev6acl7b	44	16	and	and	CC
cord-321150-ev6acl7b	44	17	last	last	JJ
cord-321150-ev6acl7b	44	18	term	term	NN
cord-321150-ev6acl7b	44	19	in	in	IN
cord-321150-ev6acl7b	44	20	the	the	DT
cord-321150-ev6acl7b	44	21	sum	sum	NN
cord-321150-ev6acl7b	44	22	above	above	RB
cord-321150-ev6acl7b	44	23	,	,	,
cord-321150-ev6acl7b	44	24	and	and	CC
cord-321150-ev6acl7b	44	25	using	use	VBG
cord-321150-ev6acl7b	44	26	the	the	DT
cord-321150-ev6acl7b	44	27	y	y	NNP
cord-321150-ev6acl7b	44	28	-	-	HYPH
cord-321150-ev6acl7b	44	29	variable	variable	JJ
cord-321150-ev6acl7b	44	30	recursions	recursion	NNS
cord-321150-ev6acl7b	44	31	,	,	,
cord-321150-ev6acl7b	44	32	a	a	DT
cord-321150-ev6acl7b	44	33	nearly	nearly	RB
cord-321150-ev6acl7b	44	34	direct	direct	JJ
cord-321150-ev6acl7b	44	35	recursion	recursion	NN
cord-321150-ev6acl7b	44	36	can	can	MD
cord-321150-ev6acl7b	44	37	be	be	VB
cord-321150-ev6acl7b	44	38	written	write	VBN
cord-321150-ev6acl7b	44	39	for	for	IN
cord-321150-ev6acl7b	44	40	the	the	DT
cord-321150-ev6acl7b	44	41	x	x	NNS
cord-321150-ev6acl7b	44	42	-	-	NNS
cord-321150-ev6acl7b	44	43	variables	variable	NNS
cord-321150-ev6acl7b	44	44	:	:	:
cord-321150-ev6acl7b	45	1	The	the	DT
cord-321150-ev6acl7b	45	2	P	p	NN
cord-321150-ev6acl7b	45	3	value	value	NN
cord-321150-ev6acl7b	45	4	for	for	IN
cord-321150-ev6acl7b	45	5	observing	observe	VBG
cord-321150-ev6acl7b	45	6	a	a	DT
cord-321150-ev6acl7b	45	7	maximum	maximum	JJ
cord-321150-ev6acl7b	45	8	descent	descent	NN
cord-321150-ev6acl7b	45	9	of	of	IN
cord-321150-ev6acl7b	45	10	size	size	NN
cord-321150-ev6acl7b	45	11	at	at	IN
cord-321150-ev6acl7b	45	12	least	least	JJS
cord-321150-ev6acl7b	45	13	k	k	NNP
cord-321150-ev6acl7b	45	14	is	be	VBZ
cord-321150-ev6acl7b	45	15	defined	define	VBN
cord-321150-ev6acl7b	45	16	by	by	IN
cord-321150-ev6acl7b	45	17	and	and	CC
cord-321150-ev6acl7b	45	18	recursions	recursion	NNS
cord-321150-ev6acl7b	45	19	for	for	IN
cord-321150-ev6acl7b	45	20	the	the	DT
cord-321150-ev6acl7b	45	21	p	p	NN
cord-321150-ev6acl7b	45	22	-	-	HYPH
cord-321150-ev6acl7b	45	23	variables	variable	NNS
cord-321150-ev6acl7b	45	24	reduce	reduce	VBP
cord-321150-ev6acl7b	45	25	to	to	IN
cord-321150-ev6acl7b	45	26	:	:	:
cord-321150-ev6acl7b	45	27	The	the	DT
cord-321150-ev6acl7b	45	28	y	y	NN
cord-321150-ev6acl7b	45	29	-	-	HYPH
cord-321150-ev6acl7b	45	30	variables	variable	NNS
cord-321150-ev6acl7b	45	31	in	in	IN
cord-321150-ev6acl7b	45	32	equation	equation	NN
cord-321150-ev6acl7b	45	33	(	(	-LRB-
cord-321150-ev6acl7b	45	34	2	2	CD
cord-321150-ev6acl7b	45	35	)	)	-RRB-
cord-321150-ev6acl7b	45	36	above-	above-	NN
cord-321150-ev6acl7b	46	1	since	since	IN
cord-321150-ev6acl7b	46	2	the	the	DT
cord-321150-ev6acl7b	46	3	last	last	JJ
cord-321150-ev6acl7b	46	4	two	two	CD
cord-321150-ev6acl7b	46	5	indices	index	NNS
cord-321150-ev6acl7b	46	6	are	be	VBP
cord-321150-ev6acl7b	46	7	equal	equal	JJ
cord-321150-ev6acl7b	46	8	-	-	:
cord-321150-ev6acl7b	46	9	can	can	MD
cord-321150-ev6acl7b	46	10	be	be	VB
cord-321150-ev6acl7b	46	11	computed	compute	VBN
cord-321150-ev6acl7b	46	12	recursively	recursively	RB
cord-321150-ev6acl7b	46	13	by	by	IN
cord-321150-ev6acl7b	46	14	building	build	VBG
cord-321150-ev6acl7b	46	15	one	one	CD
cord-321150-ev6acl7b	46	16	table	table	NN
cord-321150-ev6acl7b	46	17	of	of	IN
cord-321150-ev6acl7b	46	18	size	size	NN
cord-321150-ev6acl7b	46	19	mn	mn	NNP
cord-321150-ev6acl7b	46	20	2	2	CD
cord-321150-ev6acl7b	46	21	.	.	.
cord-321150-ev6acl7b	47	1	The	the	DT
cord-321150-ev6acl7b	47	2	p	p	NN
cord-321150-ev6acl7b	47	3	-	-	HYPH
cord-321150-ev6acl7b	47	4	variables	variable	NNS
cord-321150-ev6acl7b	47	5	can	can	MD
cord-321150-ev6acl7b	47	6	be	be	VB
cord-321150-ev6acl7b	47	7	recursively	recursively	RB
cord-321150-ev6acl7b	47	8	computed	compute	VBN
cord-321150-ev6acl7b	47	9	by	by	IN
cord-321150-ev6acl7b	47	10	building	build	VBG
cord-321150-ev6acl7b	47	11	a	a	DT
cord-321150-ev6acl7b	47	12	second	second	JJ
cord-321150-ev6acl7b	47	13	table	table	NN
cord-321150-ev6acl7b	47	14	of	of	IN
cord-321150-ev6acl7b	47	15	size	size	NN
cord-321150-ev6acl7b	47	16	mn	mn	NNP
cord-321150-ev6acl7b	47	17	2	2	CD
cord-321150-ev6acl7b	47	18	.	.	.
cord-321150-ev6acl7b	48	1	This	this	DT
cord-321150-ev6acl7b	48	2	means	mean	VBZ
cord-321150-ev6acl7b	48	3	that	that	IN
cord-321150-ev6acl7b	48	4	the	the	DT
cord-321150-ev6acl7b	48	5	entire	entire	JJ
cord-321150-ev6acl7b	48	6	computational	computational	JJ
cord-321150-ev6acl7b	48	7	procedure	procedure	NN
cord-321150-ev6acl7b	48	8	of	of	IN
cord-321150-ev6acl7b	48	9	P	p	NN
cord-321150-ev6acl7b	48	10	values	value	NNS
cord-321150-ev6acl7b	48	11	can	can	MD
cord-321150-ev6acl7b	48	12	be	be	VB
cord-321150-ev6acl7b	48	13	done	do	VBN
cord-321150-ev6acl7b	48	14	with	with	IN
cord-321150-ev6acl7b	48	15	space	space	NN
cord-321150-ev6acl7b	48	16	complexity	complexity	NN
cord-321150-ev6acl7b	49	1	O(mn	o(mn	NN
cord-321150-ev6acl7b	49	2	2	2	CD
cord-321150-ev6acl7b	49	3	)	)	-RRB-
cord-321150-ev6acl7b	50	1	instead	instead	RB
cord-321150-ev6acl7b	50	2	of	of	IN
cord-321150-ev6acl7b	50	3	the	the	DT
cord-321150-ev6acl7b	50	4	original	original	JJ
cord-321150-ev6acl7b	50	5	O(mn	o(mn	NN
cord-321150-ev6acl7b	50	6	3	3	CD
cord-321150-ev6acl7b	50	7	)	)	-RRB-
cord-321150-ev6acl7b	50	8	presented	present	VBN
cord-321150-ev6acl7b	50	9	in	in	IN
cord-321150-ev6acl7b	50	10	Boni	Boni	NNP
cord-321150-ev6acl7b	50	11	et	et	FW
cord-321150-ev6acl7b	50	12	al	al	NNP
cord-321150-ev6acl7b	50	13	.	.	.
cord-321150-ev6acl7b	51	1	(	(	-LRB-
cord-321150-ev6acl7b	51	2	2007	2007	CD
cord-321150-ev6acl7b	51	3	)	)	-RRB-
cord-321150-ev6acl7b	51	4	.	.	.
cord-321150-ev6acl7b	52	1	All	all	DT
cord-321150-ev6acl7b	52	2	computations	computation	NNS
cord-321150-ev6acl7b	52	3	were	be	VBD
cord-321150-ev6acl7b	52	4	verified	verify	VBN
cord-321150-ev6acl7b	52	5	against	against	IN
cord-321150-ev6acl7b	52	6	the	the	DT
cord-321150-ev6acl7b	52	7	original	original	JJ
cord-321150-ev6acl7b	52	8	approach	approach	NN
cord-321150-ev6acl7b	52	9	.	.	.
cord-321150-ev6acl7b	53	1	This	this	DT
cord-321150-ev6acl7b	53	2	new	new	JJ
cord-321150-ev6acl7b	53	3	approach	approach	NN
cord-321150-ev6acl7b	53	4	allows	allow	VBZ
cord-321150-ev6acl7b	53	5	larger	large	JJR
cord-321150-ev6acl7b	53	6	probability	probability	NN
cord-321150-ev6acl7b	53	7	tables	table	NNS
cord-321150-ev6acl7b	53	8	to	to	TO
cord-321150-ev6acl7b	53	9	be	be	VB
cord-321150-ev6acl7b	53	10	built	build	VBN
cord-321150-ev6acl7b	53	11	more	more	RBR
cord-321150-ev6acl7b	53	12	quickly	quickly	RB
cord-321150-ev6acl7b	53	13	.	.	.
cord-321150-ev6acl7b	54	1	Using	use	VBG
cord-321150-ev6acl7b	54	2	the	the	DT
cord-321150-ev6acl7b	54	3	2007	2007	CD
cord-321150-ev6acl7b	54	4	recursions	recursion	NNS
cord-321150-ev6acl7b	54	5	,	,	,
cord-321150-ev6acl7b	54	6	a	a	DT
cord-321150-ev6acl7b	54	7	table	table	NN
cord-321150-ev6acl7b	54	8	of	of	IN
cord-321150-ev6acl7b	54	9	size	size	NN
cord-321150-ev6acl7b	54	10	700	700	CD
cord-321150-ev6acl7b	54	11	Â	â	NN
cord-321150-ev6acl7b	54	12	700	700	CD
cord-321150-ev6acl7b	54	13	Â	â	NN
cord-321150-ev6acl7b	54	14	700	700	CD
cord-321150-ev6acl7b	54	15	was	be	VBD
cord-321150-ev6acl7b	54	16	built	build	VBN
cord-321150-ev6acl7b	54	17	in	in	IN
cord-321150-ev6acl7b	54	18	9	9	CD
cord-321150-ev6acl7b	54	19	h	h	NN
cord-321150-ev6acl7b	54	20	and	and	CC
cord-321150-ev6acl7b	54	21	used	use	VBD
cord-321150-ev6acl7b	54	22	5.1-GB	5.1-gb	CD
cord-321150-ev6acl7b	54	23	RAM	RAM	NNP
cord-321150-ev6acl7b	54	24	(	(	-LRB-
cord-321150-ev6acl7b	54	25	2.6	2.6	CD
cord-321150-ev6acl7b	54	26	GHz	GHz	NNS
cord-321150-ev6acl7b	54	27	processor	processor	NN
cord-321150-ev6acl7b	54	28	;	;	:
cord-321150-ev6acl7b	54	29	16-GB	16-gb	CD
cord-321150-ev6acl7b	54	30	RAM	ram	NN
cord-321150-ev6acl7b	54	31	)	)	-RRB-
cord-321150-ev6acl7b	54	32	.	.	.
cord-321150-ev6acl7b	55	1	Using	use	VBG
cord-321150-ev6acl7b	55	2	the	the	DT
cord-321150-ev6acl7b	55	3	recursions	recursion	NNS
cord-321150-ev6acl7b	55	4	above	above	RB
cord-321150-ev6acl7b	55	5	,	,	,
cord-321150-ev6acl7b	55	6	a	a	DT
cord-321150-ev6acl7b	55	7	table	table	NN
cord-321150-ev6acl7b	55	8	of	of	IN
cord-321150-ev6acl7b	55	9	1,600	1,600	CD
cord-321150-ev6acl7b	55	10	Â	â	CD
cord-321150-ev6acl7b	55	11	1,600	1,600	CD
cord-321150-ev6acl7b	55	12	Â	â	NN
cord-321150-ev6acl7b	55	13	1,600	1,600	CD
cord-321150-ev6acl7b	55	14	was	be	VBD
cord-321150-ev6acl7b	55	15	built	build	VBN
cord-321150-ev6acl7b	55	16	in	in	IN
cord-321150-ev6acl7b	55	17	1	1	CD
cord-321150-ev6acl7b	55	18	h	h	NN
cord-321150-ev6acl7b	55	19	and	and	CC
cord-321150-ev6acl7b	55	20	42	42	CD
cord-321150-ev6acl7b	55	21	min	min	NNS
cord-321150-ev6acl7b	55	22	in	in	IN
cord-321150-ev6acl7b	55	23	a	a	DT
cord-321150-ev6acl7b	55	24	10.4-GB	10.4-gb	CD
cord-321150-ev6acl7b	55	25	memory	memory	NN
cord-321150-ev6acl7b	55	26	footprint	footprint	NN
cord-321150-ev6acl7b	55	27	.	.	.
cord-321150-ev6acl7b	56	1	Two	two	CD
cord-321150-ev6acl7b	56	2	other	other	JJ
cord-321150-ev6acl7b	56	3	noteworthy	noteworthy	JJ
cord-321150-ev6acl7b	56	4	improvements	improvement	NNS
cord-321150-ev6acl7b	56	5	were	be	VBD
cord-321150-ev6acl7b	56	6	made	make	VBN
cord-321150-ev6acl7b	56	7	to	to	IN
cord-321150-ev6acl7b	56	8	the	the	DT
cord-321150-ev6acl7b	56	9	algorithm	algorithm	NN
cord-321150-ev6acl7b	56	10	:	:	:
cord-321150-ev6acl7b	56	11	1	1	LS
cord-321150-ev6acl7b	56	12	)	)	-RRB-
cord-321150-ev6acl7b	56	13	faster	fast	JJR
cord-321150-ev6acl7b	56	14	breakpoint	breakpoint	NN
cord-321150-ev6acl7b	56	15	calculations	calculation	NNS
cord-321150-ev6acl7b	56	16	by	by	IN
cord-321150-ev6acl7b	56	17	using	use	VBG
cord-321150-ev6acl7b	56	18	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	56	19	sites	site	NNS
cord-321150-ev6acl7b	56	20	only	only	RB
cord-321150-ev6acl7b	56	21	in	in	IN
cord-321150-ev6acl7b	56	22	Relationship	relationship	NN
cord-321150-ev6acl7b	56	23	between	between	IN
cord-321150-ev6acl7b	56	24	ordering	ordering	NN
cord-321150-ev6acl7b	56	25	of	of	IN
cord-321150-ev6acl7b	56	26	informative	informative	JJ
cord-321150-ev6acl7b	56	27	sites	site	NNS
cord-321150-ev6acl7b	56	28	along	along	IN
cord-321150-ev6acl7b	56	29	a	a	DT
cord-321150-ev6acl7b	56	30	genome	genome	NN
cord-321150-ev6acl7b	56	31	and	and	CC
cord-321150-ev6acl7b	56	32	a	a	DT
cord-321150-ev6acl7b	56	33	hypergeometric	hypergeometric	JJ
cord-321150-ev6acl7b	56	34	random	random	JJ
cord-321150-ev6acl7b	56	35	walk	walk	NN
cord-321150-ev6acl7b	56	36	.	.	.
cord-321150-ev6acl7b	57	1	Below	below	IN
cord-321150-ev6acl7b	57	2	each	each	DT
cord-321150-ev6acl7b	57	3	set	set	NN
cord-321150-ev6acl7b	57	4	of	of	IN
cord-321150-ev6acl7b	57	5	axes	axis	NNS
cord-321150-ev6acl7b	57	6	,	,	,
cord-321150-ev6acl7b	57	7	the	the	DT
cord-321150-ev6acl7b	57	8	30	30	CD
cord-321150-ev6acl7b	57	9	red	red	JJ
cord-321150-ev6acl7b	57	10	bars	bar	NNS
cord-321150-ev6acl7b	57	11	and	and	CC
cord-321150-ev6acl7b	57	12	30	30	CD
cord-321150-ev6acl7b	57	13	blue	blue	JJ
cord-321150-ev6acl7b	57	14	bars	bar	NNS
cord-321150-ev6acl7b	57	15	show	show	VBP
cord-321150-ev6acl7b	57	16	positions	position	NNS
cord-321150-ev6acl7b	57	17	on	on	IN
cord-321150-ev6acl7b	57	18	a	a	DT
cord-321150-ev6acl7b	57	19	genome	genome	NN
cord-321150-ev6acl7b	57	20	(	(	-LRB-
cord-321150-ev6acl7b	57	21	informative	informative	JJ
cord-321150-ev6acl7b	57	22	sites	site	NNS
cord-321150-ev6acl7b	57	23	)	)	-RRB-
cord-321150-ev6acl7b	57	24	where	where	WRB
cord-321150-ev6acl7b	57	25	a	a	DT
cord-321150-ev6acl7b	57	26	putative	putative	JJ
cord-321150-ev6acl7b	57	27	recombinant	recombinant	JJ
cord-321150-ev6acl7b	57	28	sequence	sequence	NN
cord-321150-ev6acl7b	57	29	is	be	VBZ
cord-321150-ev6acl7b	57	30	identical	identical	JJ
cord-321150-ev6acl7b	57	31	to	to	IN
cord-321150-ev6acl7b	57	32	parent	parent	NN
cord-321150-ev6acl7b	57	33	P	p	NN
cord-321150-ev6acl7b	57	34	but	but	CC
cord-321150-ev6acl7b	57	35	different	different	JJ
cord-321150-ev6acl7b	57	36	from	from	IN
cord-321150-ev6acl7b	57	37	parent	parent	NN
cord-321150-ev6acl7b	57	38	Q	Q	NNP
cord-321150-ev6acl7b	57	39	(	(	-LRB-
cord-321150-ev6acl7b	57	40	blue	blue	JJ
cord-321150-ev6acl7b	57	41	bars	bar	NNS
cord-321150-ev6acl7b	57	42	)	)	-RRB-
cord-321150-ev6acl7b	57	43	,	,	,
cord-321150-ev6acl7b	57	44	or	or	CC
cord-321150-ev6acl7b	57	45	identical	identical	JJ
cord-321150-ev6acl7b	57	46	to	to	IN
cord-321150-ev6acl7b	57	47	parent	parent	NN
cord-321150-ev6acl7b	57	48	Q	q	NN
cord-321150-ev6acl7b	57	49	but	but	CC
cord-321150-ev6acl7b	57	50	different	different	JJ
cord-321150-ev6acl7b	57	51	from	from	IN
cord-321150-ev6acl7b	57	52	parent	parent	NN
cord-321150-ev6acl7b	57	53	P	p	NN
cord-321150-ev6acl7b	57	54	(	(	-LRB-
cord-321150-ev6acl7b	57	55	red	red	JJ
cord-321150-ev6acl7b	57	56	bars	bar	NNS
cord-321150-ev6acl7b	57	57	)	)	-RRB-
cord-321150-ev6acl7b	57	58	.	.	.
cord-321150-ev6acl7b	58	1	Each	each	DT
cord-321150-ev6acl7b	58	2	blue	blue	JJ
cord-321150-ev6acl7b	58	3	site	site	NN
cord-321150-ev6acl7b	58	4	can	can	MD
cord-321150-ev6acl7b	58	5	be	be	VB
cord-321150-ev6acl7b	58	6	mapped	map	VBN
cord-321150-ev6acl7b	58	7	to	to	IN
cord-321150-ev6acl7b	58	8	an	an	DT
cord-321150-ev6acl7b	58	9	up	up	JJ
cord-321150-ev6acl7b	58	10	-	-	HYPH
cord-321150-ev6acl7b	58	11	step	step	NN
cord-321150-ev6acl7b	58	12	in	in	IN
cord-321150-ev6acl7b	58	13	a	a	DT
cord-321150-ev6acl7b	58	14	random	random	JJ
cord-321150-ev6acl7b	58	15	walk	walk	NN
cord-321150-ev6acl7b	58	16	and	and	CC
cord-321150-ev6acl7b	58	17	each	each	DT
cord-321150-ev6acl7b	58	18	red	red	JJ
cord-321150-ev6acl7b	58	19	site	site	NN
cord-321150-ev6acl7b	58	20	can	can	MD
cord-321150-ev6acl7b	58	21	be	be	VB
cord-321150-ev6acl7b	58	22	mapped	map	VBN
cord-321150-ev6acl7b	58	23	to	to	IN
cord-321150-ev6acl7b	58	24	a	a	DT
cord-321150-ev6acl7b	58	25	down	down	JJ
cord-321150-ev6acl7b	58	26	-	-	HYPH
cord-321150-ev6acl7b	58	27	step	step	NN
cord-321150-ev6acl7b	58	28	in	in	IN
cord-321150-ev6acl7b	58	29	a	a	DT
cord-321150-ev6acl7b	58	30	random	random	JJ
cord-321150-ev6acl7b	58	31	walk	walk	NN
cord-321150-ev6acl7b	58	32	,	,	,
cord-321150-ev6acl7b	58	33	and	and	CC
cord-321150-ev6acl7b	58	34	there	there	EX
cord-321150-ev6acl7b	58	35	is	be	VBZ
cord-321150-ev6acl7b	58	36	a	a	DT
cord-321150-ev6acl7b	58	37	one	one	CD
cord-321150-ev6acl7b	58	38	-	-	HYPH
cord-321150-ev6acl7b	58	39	to	to	IN
cord-321150-ev6acl7b	58	40	-	-	HYPH
cord-321150-ev6acl7b	58	41	one	one	CD
cord-321150-ev6acl7b	58	42	correspondence	correspondence	NN
cord-321150-ev6acl7b	58	43	between	between	IN
cord-321150-ev6acl7b	58	44	the	the	DT
cord-321150-ev6acl7b	58	45	space	space	NN
cord-321150-ev6acl7b	58	46	of	of	IN
cord-321150-ev6acl7b	58	47	informative	informative	JJ
cord-321150-ev6acl7b	58	48	-	-	HYPH
cord-321150-ev6acl7b	58	49	site	site	NN
cord-321150-ev6acl7b	58	50	arrangements	arrangement	NNS
cord-321150-ev6acl7b	58	51	and	and	CC
cord-321150-ev6acl7b	58	52	the	the	DT
cord-321150-ev6acl7b	58	53	space	space	NN
cord-321150-ev6acl7b	58	54	of	of	IN
cord-321150-ev6acl7b	58	55	hypergeometric	hypergeometric	JJ
cord-321150-ev6acl7b	58	56	random	random	JJ
cord-321150-ev6acl7b	58	57	walks	walk	NNS
cord-321150-ev6acl7b	58	58	.	.	.
cord-321150-ev6acl7b	59	1	(	(	-LRB-
cord-321150-ev6acl7b	59	2	A	a	NN
cord-321150-ev6acl7b	59	3	)	)	-RRB-
cord-321150-ev6acl7b	59	4	A	a	DT
cord-321150-ev6acl7b	59	5	random	random	JJ
cord-321150-ev6acl7b	59	6	arrangement	arrangement	NN
cord-321150-ev6acl7b	59	7	of	of	IN
cord-321150-ev6acl7b	59	8	informative	informative	JJ
cord-321150-ev6acl7b	59	9	sites	site	NNS
cord-321150-ev6acl7b	59	10	,	,	,
cord-321150-ev6acl7b	59	11	which	which	WDT
cord-321150-ev6acl7b	59	12	does	do	VBZ
cord-321150-ev6acl7b	59	13	not	not	RB
cord-321150-ev6acl7b	59	14	visually	visually	RB
cord-321150-ev6acl7b	59	15	suggest	suggest	VB
cord-321150-ev6acl7b	59	16	that	that	IN
cord-321150-ev6acl7b	59	17	the	the	DT
cord-321150-ev6acl7b	59	18	sequence	sequence	NN
cord-321150-ev6acl7b	59	19	is	be	VBZ
cord-321150-ev6acl7b	59	20	a	a	DT
cord-321150-ev6acl7b	59	21	mosaic	mosaic	NN
cord-321150-ev6acl7b	59	22	of	of	IN
cord-321150-ev6acl7b	59	23	putative	putative	JJ
cord-321150-ev6acl7b	59	24	parents	parent	NNS
cord-321150-ev6acl7b	59	25	P	p	NN
cord-321150-ev6acl7b	59	26	and	and	CC
cord-321150-ev6acl7b	59	27	Q.	Q.	NNP
cord-321150-ev6acl7b	60	1	The	the	DT
cord-321150-ev6acl7b	60	2	arrangement	arrangement	NN
cord-321150-ev6acl7b	60	3	of	of	IN
cord-321150-ev6acl7b	60	4	sites	site	NNS
cord-321150-ev6acl7b	60	5	maps	map	NNS
cord-321150-ev6acl7b	60	6	to	to	IN
cord-321150-ev6acl7b	60	7	a	a	DT
cord-321150-ev6acl7b	60	8	random	random	JJ
cord-321150-ev6acl7b	60	9	walk	walk	NN
cord-321150-ev6acl7b	60	10	which	which	WDT
cord-321150-ev6acl7b	60	11	stays	stay	VBZ
cord-321150-ev6acl7b	60	12	fairly	fairly	RB
cord-321150-ev6acl7b	60	13	close	close	JJ
cord-321150-ev6acl7b	60	14	to	to	IN
cord-321150-ev6acl7b	60	15	the	the	DT
cord-321150-ev6acl7b	60	16	horizontal	horizontal	JJ
cord-321150-ev6acl7b	60	17	axis	axis	NN
cord-321150-ev6acl7b	60	18	.	.	.
cord-321150-ev6acl7b	61	1	This	this	DT
cord-321150-ev6acl7b	61	2	walk	walk	NN
cord-321150-ev6acl7b	61	3	's	's	POS
cord-321150-ev6acl7b	61	4	maximum	maximum	JJ
cord-321150-ev6acl7b	61	5	descent	descent	NN
cord-321150-ev6acl7b	61	6	is	be	VBZ
cord-321150-ev6acl7b	61	7	eight	eight	CD
cord-321150-ev6acl7b	61	8	steps	step	NNS
cord-321150-ev6acl7b	61	9	,	,	,
cord-321150-ev6acl7b	61	10	and	and	CC
cord-321150-ev6acl7b	61	11	$	$	$
cord-321150-ev6acl7b	61	12	54	54	CD
cord-321150-ev6acl7b	61	13	%	%	NN
cord-321150-ev6acl7b	61	14	of	of	IN
cord-321150-ev6acl7b	61	15	HGRWs	hgrw	NNS
cord-321150-ev6acl7b	61	16	with	with	IN
cord-321150-ev6acl7b	61	17	30	30	CD
cord-321150-ev6acl7b	61	18	up	up	NN
cord-321150-ev6acl7b	61	19	-	-	HYPH
cord-321150-ev6acl7b	61	20	steps	step	NNS
cord-321150-ev6acl7b	61	21	and	and	CC
cord-321150-ev6acl7b	61	22	30	30	CD
cord-321150-ev6acl7b	61	23	down	down	RB
cord-321150-ev6acl7b	61	24	-	-	HYPH
cord-321150-ev6acl7b	61	25	steps	step	NNS
cord-321150-ev6acl7b	61	26	have	have	VBP
cord-321150-ev6acl7b	61	27	a	a	DT
cord-321150-ev6acl7b	61	28	maximum	maximum	JJ
cord-321150-ev6acl7b	61	29	descent	descent	NN
cord-321150-ev6acl7b	61	30	of	of	IN
cord-321150-ev6acl7b	61	31	eight	eight	CD
cord-321150-ev6acl7b	61	32	steps	step	NNS
cord-321150-ev6acl7b	61	33	or	or	CC
cord-321150-ev6acl7b	61	34	greater	great	JJR
cord-321150-ev6acl7b	61	35	.	.	.
cord-321150-ev6acl7b	62	1	(	(	-LRB-
cord-321150-ev6acl7b	62	2	B	b	NN
cord-321150-ev6acl7b	62	3	)	)	-RRB-
cord-321150-ev6acl7b	62	4	A	a	DT
cord-321150-ev6acl7b	62	5	nonrandom	nonrandom	JJ
cord-321150-ev6acl7b	62	6	arrangement	arrangement	NN
cord-321150-ev6acl7b	62	7	of	of	IN
cord-321150-ev6acl7b	62	8	informative	informative	JJ
cord-321150-ev6acl7b	62	9	sites	site	NNS
cord-321150-ev6acl7b	62	10	that	that	WDT
cord-321150-ev6acl7b	62	11	clearly	clearly	RB
cord-321150-ev6acl7b	62	12	suggests	suggest	VBZ
cord-321150-ev6acl7b	62	13	that	that	IN
cord-321150-ev6acl7b	62	14	the	the	DT
cord-321150-ev6acl7b	62	15	candidate	candidate	NN
cord-321150-ev6acl7b	62	16	sequence	sequence	NN
cord-321150-ev6acl7b	62	17	is	be	VBZ
cord-321150-ev6acl7b	62	18	a	a	DT
cord-321150-ev6acl7b	62	19	mosaic	mosaic	NN
cord-321150-ev6acl7b	62	20	of	of	IN
cord-321150-ev6acl7b	62	21	the	the	DT
cord-321150-ev6acl7b	62	22	two	two	CD
cord-321150-ev6acl7b	62	23	parental	parental	JJ
cord-321150-ev6acl7b	62	24	sequences	sequence	NNS
cord-321150-ev6acl7b	62	25	P	p	NN
cord-321150-ev6acl7b	62	26	and	and	CC
cord-321150-ev6acl7b	62	27	Q.	Q.	NNP
cord-321150-ev6acl7b	63	1	The	the	DT
cord-321150-ev6acl7b	63	2	probability	probability	NN
cord-321150-ev6acl7b	63	3	of	of	IN
cord-321150-ev6acl7b	63	4	all	all	PDT
cord-321150-ev6acl7b	63	5	the	the	DT
cord-321150-ev6acl7b	63	6	red	red	JJ
cord-321150-ev6acl7b	63	7	sites	site	NNS
cord-321150-ev6acl7b	63	8	appearing	appear	VBG
cord-321150-ev6acl7b	63	9	consecutively	consecutively	RB
cord-321150-ev6acl7b	63	10	is	be	VBZ
cord-321150-ev6acl7b	63	11	31	31	CD
cord-321150-ev6acl7b	63	12	!	!	.
cord-321150-ev6acl7b	64	1	Â	â	NN
cord-321150-ev6acl7b	64	2	30!/60	30!/60	CD
cord-321150-ev6acl7b	64	3	!	!	.
cord-321150-ev6acl7b	65	1	which	which	WDT
cord-321150-ev6acl7b	65	2	is	be	VBZ
cord-321150-ev6acl7b	65	3	2.62	2.62	CD
cord-321150-ev6acl7b	65	4	Â	â	CD
cord-321150-ev6acl7b	65	5	10	10	CD
cord-321150-ev6acl7b	65	6	À16	À16	NNP
cord-321150-ev6acl7b	65	7	.	.	.
cord-321150-ev6acl7b	66	1	(	(	-LRB-
cord-321150-ev6acl7b	66	2	C	C	NNP
cord-321150-ev6acl7b	66	3	)	)	-RRB-
cord-321150-ev6acl7b	67	1	An	an	DT
cord-321150-ev6acl7b	67	2	arrangement	arrangement	NN
cord-321150-ev6acl7b	67	3	of	of	IN
cord-321150-ev6acl7b	67	4	red	red	JJ
cord-321150-ev6acl7b	67	5	sites	site	NNS
cord-321150-ev6acl7b	67	6	and	and	CC
cord-321150-ev6acl7b	67	7	blue	blue	JJ
cord-321150-ev6acl7b	67	8	sites	site	NNS
cord-321150-ev6acl7b	67	9	that	that	WDT
cord-321150-ev6acl7b	67	10	suggests	suggest	VBZ
cord-321150-ev6acl7b	67	11	the	the	DT
cord-321150-ev6acl7b	67	12	red	red	JJ
cord-321150-ev6acl7b	67	13	sites	site	NNS
cord-321150-ev6acl7b	67	14	may	may	MD
cord-321150-ev6acl7b	67	15	be	be	VB
cord-321150-ev6acl7b	67	16	clustered	cluster	VBN
cord-321150-ev6acl7b	67	17	in	in	IN
cord-321150-ev6acl7b	67	18	the	the	DT
cord-321150-ev6acl7b	67	19	middle	middle	NN
cord-321150-ev6acl7b	67	20	.	.	.
cord-321150-ev6acl7b	68	1	When	when	WRB
cord-321150-ev6acl7b	68	2	mapping	map	VBG
cord-321150-ev6acl7b	68	3	the	the	DT
cord-321150-ev6acl7b	68	4	site	site	NN
cord-321150-ev6acl7b	68	5	arrangement	arrangement	NN
cord-321150-ev6acl7b	68	6	to	to	IN
cord-321150-ev6acl7b	68	7	a	a	DT
cord-321150-ev6acl7b	68	8	hypergeometric	hypergeometric	JJ
cord-321150-ev6acl7b	68	9	random	random	JJ
cord-321150-ev6acl7b	68	10	walk	walk	NN
cord-321150-ev6acl7b	68	11	,	,	,
cord-321150-ev6acl7b	68	12	the	the	DT
cord-321150-ev6acl7b	68	13	random	random	JJ
cord-321150-ev6acl7b	68	14	walk	walk	NN
cord-321150-ev6acl7b	68	15	has	have	VBZ
cord-321150-ev6acl7b	68	16	a	a	DT
cord-321150-ev6acl7b	68	17	maximum	maximum	JJ
cord-321150-ev6acl7b	68	18	descent	descent	NN
cord-321150-ev6acl7b	68	19	of	of	IN
cord-321150-ev6acl7b	68	20	18	18	CD
cord-321150-ev6acl7b	68	21	steps	step	NNS
cord-321150-ev6acl7b	68	22	.	.	.
cord-321150-ev6acl7b	69	1	The	the	DT
cord-321150-ev6acl7b	69	2	P	p	NN
cord-321150-ev6acl7b	69	3	value	value	NN
cord-321150-ev6acl7b	69	4	for	for	IN
cord-321150-ev6acl7b	69	5	a	a	DT
cord-321150-ev6acl7b	69	6	maximum	maximum	JJ
cord-321150-ev6acl7b	69	7	descent	descent	NN
cord-321150-ev6acl7b	69	8	of	of	IN
cord-321150-ev6acl7b	69	9	18	18	CD
cord-321150-ev6acl7b	69	10	steps	step	NNS
cord-321150-ev6acl7b	69	11	can	can	MD
cord-321150-ev6acl7b	69	12	not	not	RB
cord-321150-ev6acl7b	69	13	be	be	VB
cord-321150-ev6acl7b	69	14	written	write	VBN
cord-321150-ev6acl7b	69	15	down	down	RP
cord-321150-ev6acl7b	69	16	in	in	IN
cord-321150-ev6acl7b	69	17	closed	closed	JJ
cord-321150-ev6acl7b	69	18	form	form	NN
cord-321150-ev6acl7b	69	19	but	but	CC
cord-321150-ev6acl7b	69	20	can	can	MD
cord-321150-ev6acl7b	69	21	be	be	VB
cord-321150-ev6acl7b	69	22	calculated	calculate	VBN
cord-321150-ev6acl7b	69	23	from	from	IN
cord-321150-ev6acl7b	69	24	recursion	recursion	NN
cord-321150-ev6acl7b	69	25	(	(	-LRB-
cord-321150-ev6acl7b	69	26	4	4	CD
cord-321150-ev6acl7b	69	27	)	)	-RRB-
cord-321150-ev6acl7b	69	28	.	.	.
cord-321150-ev6acl7b	70	1	The	the	DT
cord-321150-ev6acl7b	70	2	P	p	NN
cord-321150-ev6acl7b	70	3	value	value	NN
cord-321150-ev6acl7b	70	4	for	for	IN
cord-321150-ev6acl7b	70	5	this	this	DT
cord-321150-ev6acl7b	70	6	maximum	maximum	JJ
cord-321150-ev6acl7b	70	7	descent	descent	NN
cord-321150-ev6acl7b	70	8	and	and	CC
cord-321150-ev6acl7b	70	9	for	for	IN
cord-321150-ev6acl7b	70	10	this	this	DT
cord-321150-ev6acl7b	70	11	arrangement	arrangement	NN
cord-321150-ev6acl7b	70	12	of	of	IN
cord-321150-ev6acl7b	70	13	informative	informative	JJ
cord-321150-ev6acl7b	70	14	sites	site	NNS
cord-321150-ev6acl7b	70	15	is	be	VBZ
cord-321150-ev6acl7b	70	16	1.8	1.8	CD
cord-321150-ev6acl7b	70	17	Â	â	CD
cord-321150-ev6acl7b	70	18	10	10	CD
cord-321150-ev6acl7b	70	19	À4	à4	NN
cord-321150-ev6acl7b	70	20	.	.	.
cord-321150-ev6acl7b	71	1	Lam	Lam	NNP
cord-321150-ev6acl7b	71	2	et	et	NNP
cord-321150-ev6acl7b	71	3	al	al	NNP
cord-321150-ev6acl7b	71	4	.	.	.
cord-321150-ev6acl7b	71	5	.	.	.
cord-321150-ev6acl7b	72	1	doi:10.1093	doi:10.1093	NNP
cord-321150-ev6acl7b	72	2	/	/	SYM
cord-321150-ev6acl7b	72	3	molbev	molbev	NNP
cord-321150-ev6acl7b	72	4	/	/	SYM
cord-321150-ev6acl7b	72	5	msx263	msx263	NNP
cord-321150-ev6acl7b	72	6	MBE	MBE	NNP
cord-321150-ev6acl7b	72	7	breakpoint	breakpoint	NN
cord-321150-ev6acl7b	72	8	searches	search	NNS
cord-321150-ev6acl7b	72	9	,	,	,
cord-321150-ev6acl7b	72	10	and	and	CC
cord-321150-ev6acl7b	72	11	2	2	LS
cord-321150-ev6acl7b	72	12	)	)	-RRB-
cord-321150-ev6acl7b	72	13	a	a	DT
cord-321150-ev6acl7b	72	14	repeated	repeat	VBN
cord-321150-ev6acl7b	72	15	subsampling	subsampling	NN
cord-321150-ev6acl7b	72	16	feature	feature	NN
cord-321150-ev6acl7b	72	17	that	that	WDT
cord-321150-ev6acl7b	72	18	allows	allow	VBZ
cord-321150-ev6acl7b	72	19	for	for	IN
cord-321150-ev6acl7b	72	20	comparison	comparison	NN
cord-321150-ev6acl7b	72	21	of	of	IN
cord-321150-ev6acl7b	72	22	data	datum	NNS
cord-321150-ev6acl7b	72	23	sets	set	NNS
cord-321150-ev6acl7b	72	24	of	of	IN
cord-321150-ev6acl7b	72	25	different	different	JJ
cord-321150-ev6acl7b	72	26	sizes	size	NNS
cord-321150-ev6acl7b	73	1	;	;	:
cord-321150-ev6acl7b	73	2	with	with	IN
cord-321150-ev6acl7b	73	3	this	this	DT
cord-321150-ev6acl7b	73	4	feature	feature	NN
cord-321150-ev6acl7b	73	5	one	one	PRP
cord-321150-ev6acl7b	73	6	can	can	MD
cord-321150-ev6acl7b	73	7	randomly	randomly	RB
cord-321150-ev6acl7b	73	8	subsample	subsample	VB
cord-321150-ev6acl7b	73	9	M	M	NNP
cord-321150-ev6acl7b	73	10	sequences	sequence	NNS
cord-321150-ev6acl7b	73	11	from	from	IN
cord-321150-ev6acl7b	73	12	multiple	multiple	JJ
cord-321150-ev6acl7b	73	13	databases	database	NNS
cord-321150-ev6acl7b	73	14	or	or	CC
cord-321150-ev6acl7b	73	15	sequence	sequence	NN
cord-321150-ev6acl7b	73	16	collections	collection	NNS
cord-321150-ev6acl7b	73	17	,	,	,
cord-321150-ev6acl7b	73	18	and	and	CC
cord-321150-ev6acl7b	73	19	repeat	repeat	VB
cord-321150-ev6acl7b	73	20	the	the	DT
cord-321150-ev6acl7b	73	21	process	process	NN
cord-321150-ev6acl7b	73	22	to	to	TO
cord-321150-ev6acl7b	73	23	see	see	VB
cord-321150-ev6acl7b	73	24	how	how	WRB
cord-321150-ev6acl7b	73	25	often	often	RB
cord-321150-ev6acl7b	73	26	these	these	DT
cord-321150-ev6acl7b	73	27	subsets	subset	NNS
cord-321150-ev6acl7b	73	28	exhibit	exhibit	VBP
cord-321150-ev6acl7b	73	29	recombination	recombination	NN
cord-321150-ev6acl7b	73	30	.	.	.
cord-321150-ev6acl7b	74	1	The	the	DT
cord-321150-ev6acl7b	74	2	new	new	JJ
cord-321150-ev6acl7b	74	3	source	source	NN
cord-321150-ev6acl7b	74	4	code	code	NN
cord-321150-ev6acl7b	74	5	and	and	CC
cord-321150-ev6acl7b	74	6	manual	manual	NN
cord-321150-ev6acl7b	74	7	can	can	MD
cord-321150-ev6acl7b	74	8	be	be	VB
cord-321150-ev6acl7b	74	9	downloaded	download	VBN
cord-321150-ev6acl7b	74	10	from	from	IN
cord-321150-ev6acl7b	74	11	http://mol.ax/3seq	http://mol.ax/3seq	NNP
cord-321150-ev6acl7b	74	12	.	.	.
cord-321150-ev6acl7b	75	1	When	when	WRB
cord-321150-ev6acl7b	75	2	a	a	DT
cord-321150-ev6acl7b	75	3	P	p	NN
cord-321150-ev6acl7b	75	4	value	value	NN
cord-321150-ev6acl7b	75	5	falls	fall	VBZ
cord-321150-ev6acl7b	75	6	outside	outside	IN
cord-321150-ev6acl7b	75	7	the	the	DT
cord-321150-ev6acl7b	75	8	bounds	bound	NNS
cord-321150-ev6acl7b	75	9	of	of	IN
cord-321150-ev6acl7b	75	10	the	the	DT
cord-321150-ev6acl7b	75	11	table	table	NN
cord-321150-ev6acl7b	75	12	being	be	VBG
cord-321150-ev6acl7b	75	13	used	use	VBN
cord-321150-ev6acl7b	75	14	,	,	,
cord-321150-ev6acl7b	75	15	the	the	DT
cord-321150-ev6acl7b	75	16	software	software	NN
cord-321150-ev6acl7b	75	17	substitutes	substitute	NNS
cord-321150-ev6acl7b	75	18	in	in	IN
cord-321150-ev6acl7b	75	19	Hogan	Hogan	NNP
cord-321150-ev6acl7b	75	20	-	-	HYPH
cord-321150-ev6acl7b	75	21	Siegmund	Siegmund	NNP
cord-321150-ev6acl7b	75	22	approximations	approximation	NNS
cord-321150-ev6acl7b	75	23	(	(	-LRB-
cord-321150-ev6acl7b	75	24	Hogan	Hogan	NNP
cord-321150-ev6acl7b	75	25	and	and	CC
cord-321150-ev6acl7b	75	26	Siegmund	Siegmund	NNP
cord-321150-ev6acl7b	75	27	1986	1986	CD
cord-321150-ev6acl7b	75	28	)	)	-RRB-
cord-321150-ev6acl7b	75	29	for	for	IN
cord-321150-ev6acl7b	75	30	the	the	DT
cord-321150-ev6acl7b	75	31	queried	query	VBN
cord-321150-ev6acl7b	75	32	P	p	NN
cord-321150-ev6acl7b	75	33	value	value	NN
cord-321150-ev6acl7b	75	34	.	.	.
cord-321150-ev6acl7b	76	1	The	the	DT
cord-321150-ev6acl7b	76	2	3SEQ	3seq	CD
cord-321150-ev6acl7b	76	3	maximum	maximum	JJ
cord-321150-ev6acl7b	76	4	descent	descent	NN
cord-321150-ev6acl7b	76	5	statistic	statistic	NN
cord-321150-ev6acl7b	76	6	describes	describe	VBZ
cord-321150-ev6acl7b	76	7	clustering	clustering	NN
cord-321150-ev6acl7b	76	8	patterns	pattern	NNS
cord-321150-ev6acl7b	76	9	in	in	IN
cord-321150-ev6acl7b	76	10	sequences	sequence	NNS
cord-321150-ev6acl7b	76	11	of	of	IN
cord-321150-ev6acl7b	76	12	binary	binary	JJ
cord-321150-ev6acl7b	76	13	outcomes	outcome	NNS
cord-321150-ev6acl7b	76	14	,	,	,
cord-321150-ev6acl7b	76	15	and	and	CC
cord-321150-ev6acl7b	76	16	is	be	VBZ
cord-321150-ev6acl7b	76	17	therefore	therefore	RB
cord-321150-ev6acl7b	76	18	not	not	RB
cord-321150-ev6acl7b	76	19	confined	confine	VBN
cord-321150-ev6acl7b	76	20	to	to	IN
cord-321150-ev6acl7b	76	21	recombination	recombination	NN
cord-321150-ev6acl7b	76	22	analysis	analysis	NN
cord-321150-ev6acl7b	76	23	.	.	.
cord-321150-ev6acl7b	77	1	The	the	DT
cord-321150-ev6acl7b	77	2	statistic	statistic	NN
cord-321150-ev6acl7b	77	3	can	can	MD
cord-321150-ev6acl7b	77	4	be	be	VB
cord-321150-ev6acl7b	77	5	viewed	view	VBN
cord-321150-ev6acl7b	77	6	as	as	IN
cord-321150-ev6acl7b	77	7	a	a	DT
cord-321150-ev6acl7b	77	8	generalization	generalization	NN
cord-321150-ev6acl7b	77	9	of	of	IN
cord-321150-ev6acl7b	77	10	the	the	DT
cord-321150-ev6acl7b	77	11	Mann	Mann	NNP
cord-321150-ev6acl7b	77	12	-	-	HYPH
cord-321150-ev6acl7b	77	13	Whitney	Whitney	NNP
cord-321150-ev6acl7b	77	14	U	U	NNP
cord-321150-ev6acl7b	77	15	statistic	statistic	NN
cord-321150-ev6acl7b	77	16	,	,	,
cord-321150-ev6acl7b	77	17	in	in	IN
cord-321150-ev6acl7b	77	18	the	the	DT
cord-321150-ev6acl7b	77	19	sense	sense	NN
cord-321150-ev6acl7b	77	20	that	that	IN
cord-321150-ev6acl7b	77	21	outcomes	outcome	NNS
cord-321150-ev6acl7b	77	22	of	of	IN
cord-321150-ev6acl7b	77	23	one	one	CD
cord-321150-ev6acl7b	77	24	type	type	NN
cord-321150-ev6acl7b	77	25	(	(	-LRB-
cord-321150-ev6acl7b	77	26	of	of	IN
cord-321150-ev6acl7b	77	27	a	a	DT
cord-321150-ev6acl7b	77	28	binary	binary	JJ
cord-321150-ev6acl7b	77	29	outcome	outcome	NN
cord-321150-ev6acl7b	77	30	variable	variable	NN
cord-321150-ev6acl7b	77	31	)	)	-RRB-
cord-321150-ev6acl7b	77	32	do	do	VBP
cord-321150-ev6acl7b	77	33	not	not	RB
cord-321150-ev6acl7b	77	34	necessarily	necessarily	RB
cord-321150-ev6acl7b	77	35	have	have	VB
cord-321150-ev6acl7b	77	36	to	to	TO
cord-321150-ev6acl7b	77	37	cluster	cluster	VB
cord-321150-ev6acl7b	77	38	or	or	CC
cord-321150-ev6acl7b	77	39	rank	rank	VB
cord-321150-ev6acl7b	77	40	at	at	IN
cord-321150-ev6acl7b	77	41	the	the	DT
cord-321150-ev6acl7b	77	42	beginning	beginning	NN
cord-321150-ev6acl7b	77	43	or	or	CC
cord-321150-ev6acl7b	77	44	end	end	NN
cord-321150-ev6acl7b	77	45	of	of	IN
cord-321150-ev6acl7b	77	46	a	a	DT
cord-321150-ev6acl7b	77	47	sequence	sequence	NN
cord-321150-ev6acl7b	77	48	of	of	IN
cord-321150-ev6acl7b	77	49	data	datum	NNS
cord-321150-ev6acl7b	77	50	points	point	NNS
cord-321150-ev6acl7b	77	51	.	.	.
cord-321150-ev6acl7b	78	1	The	the	DT
cord-321150-ev6acl7b	78	2	maximum	maximum	JJ
cord-321150-ev6acl7b	78	3	descent	descent	NN
cord-321150-ev6acl7b	78	4	of	of	IN
cord-321150-ev6acl7b	78	5	a	a	DT
cord-321150-ev6acl7b	78	6	HGRW	HGRW	NNP
cord-321150-ev6acl7b	78	7	can	can	MD
cord-321150-ev6acl7b	78	8	be	be	VB
cord-321150-ev6acl7b	78	9	used	use	VBN
cord-321150-ev6acl7b	78	10	to	to	TO
cord-321150-ev6acl7b	78	11	describe	describe	VB
cord-321150-ev6acl7b	78	12	the	the	DT
cord-321150-ev6acl7b	78	13	clustering	clustering	NN
cord-321150-ev6acl7b	78	14	of	of	IN
cord-321150-ev6acl7b	78	15	one	one	CD
cord-321150-ev6acl7b	78	16	particular	particular	JJ
cord-321150-ev6acl7b	78	17	binary	binary	JJ
cord-321150-ev6acl7b	78	18	outcome	outcome	NN
cord-321150-ev6acl7b	78	19	in	in	IN
cord-321150-ev6acl7b	78	20	the	the	DT
cord-321150-ev6acl7b	78	21	middle	middle	NN
cord-321150-ev6acl7b	78	22	of	of	IN
cord-321150-ev6acl7b	78	23	a	a	DT
cord-321150-ev6acl7b	78	24	sequence	sequence	NN
cord-321150-ev6acl7b	78	25	of	of	IN
cord-321150-ev6acl7b	78	26	binary	binary	JJ
cord-321150-ev6acl7b	78	27	outcomes	outcome	NNS
cord-321150-ev6acl7b	78	28	;	;	:
cord-321150-ev6acl7b	78	29	in	in	IN
cord-321150-ev6acl7b	78	30	other	other	JJ
cord-321150-ev6acl7b	78	31	words	word	NNS
cord-321150-ev6acl7b	78	32	,	,	,
cord-321150-ev6acl7b	78	33	it	-PRON-	PRP
cord-321150-ev6acl7b	78	34	is	be	VBZ
cord-321150-ev6acl7b	78	35	a	a	DT
cord-321150-ev6acl7b	78	36	1D	1d	CD
cord-321150-ev6acl7b	78	37	nonparametric	nonparametric	JJ
cord-321150-ev6acl7b	78	38	clustering	clustering	NN
cord-321150-ev6acl7b	78	39	statistic	statistic	NN
cord-321150-ev6acl7b	78	40	.	.	.
cord-321150-ev6acl7b	79	1	In	in	IN
cord-321150-ev6acl7b	79	2	recombination	recombination	NN
cord-321150-ev6acl7b	79	3	analysis	analysis	NN
cord-321150-ev6acl7b	79	4	,	,	,
cord-321150-ev6acl7b	79	5	this	this	DT
cord-321150-ev6acl7b	79	6	is	be	VBZ
cord-321150-ev6acl7b	79	7	the	the	DT
cord-321150-ev6acl7b	79	8	clustering	clustering	NN
cord-321150-ev6acl7b	79	9	of	of	IN
cord-321150-ev6acl7b	79	10	one	one	CD
cord-321150-ev6acl7b	79	11	kind	kind	NN
cord-321150-ev6acl7b	79	12	of	of	RB
cord-321150-ev6acl7b	79	13	informative	informative	JJ
cord-321150-ev6acl7b	79	14	site	site	NN
cord-321150-ev6acl7b	79	15	among	among	IN
cord-321150-ev6acl7b	79	16	all	all	PDT
cord-321150-ev6acl7b	79	17	the	the	DT
cord-321150-ev6acl7b	79	18	informative	informative	JJ
cord-321150-ev6acl7b	79	19	sites	site	NNS
cord-321150-ev6acl7b	79	20	(	(	-LRB-
cord-321150-ev6acl7b	79	21	Han	Han	NNP
cord-321150-ev6acl7b	79	22	et	et	NNP
cord-321150-ev6acl7b	79	23	al	al	NNP
cord-321150-ev6acl7b	79	24	.	.	NNP
cord-321150-ev6acl7b	79	25	2010	2010	CD
cord-321150-ev6acl7b	79	26	)	)	-RRB-
cord-321150-ev6acl7b	79	27	.	.	.
cord-321150-ev6acl7b	80	1	To	to	TO
cord-321150-ev6acl7b	80	2	make	make	VB
cord-321150-ev6acl7b	80	3	use	use	NN
cord-321150-ev6acl7b	80	4	of	of	IN
cord-321150-ev6acl7b	80	5	this	this	DT
cord-321150-ev6acl7b	80	6	statistic	statistic	NN
cord-321150-ev6acl7b	80	7	easier	easy	JJR
cord-321150-ev6acl7b	80	8	for	for	IN
cord-321150-ev6acl7b	80	9	those	those	DT
cord-321150-ev6acl7b	80	10	working	work	VBG
cord-321150-ev6acl7b	80	11	outside	outside	IN
cord-321150-ev6acl7b	80	12	the	the	DT
cord-321150-ev6acl7b	80	13	field	field	NN
cord-321150-ev6acl7b	80	14	of	of	IN
cord-321150-ev6acl7b	80	15	recombination	recombination	NN
cord-321150-ev6acl7b	80	16	,	,	,
cord-321150-ev6acl7b	80	17	we	-PRON-	PRP
cord-321150-ev6acl7b	80	18	developed	develop	VBD
cord-321150-ev6acl7b	80	19	a	a	DT
cord-321150-ev6acl7b	80	20	web	web	NN
cord-321150-ev6acl7b	80	21	calculator	calculator	NN
cord-321150-ev6acl7b	80	22	(	(	-LRB-
cord-321150-ev6acl7b	80	23	fig	fig	NN
cord-321150-ev6acl7b	80	24	.	.	NNP
cord-321150-ev6acl7b	80	25	2	2	LS
cord-321150-ev6acl7b	80	26	)	)	-RRB-
cord-321150-ev6acl7b	80	27	that	that	WDT
cord-321150-ev6acl7b	80	28	computes	compute	VBZ
cord-321150-ev6acl7b	80	29	exact	exact	JJ
cord-321150-ev6acl7b	80	30	P	p	NN
cord-321150-ev6acl7b	80	31	values	value	NNS
cord-321150-ev6acl7b	80	32	for	for	IN
cord-321150-ev6acl7b	80	33	clustering	cluster	VBG
cord-321150-ev6acl7b	80	34	in	in	IN
cord-321150-ev6acl7b	80	35	a	a	DT
cord-321150-ev6acl7b	80	36	sequence	sequence	NN
cord-321150-ev6acl7b	80	37	of	of	IN
cord-321150-ev6acl7b	80	38	binary	binary	JJ
cord-321150-ev6acl7b	80	39	outcomes	outcome	NNS
cord-321150-ev6acl7b	80	40	,	,	,
cord-321150-ev6acl7b	80	41	available	available	JJ
cord-321150-ev6acl7b	80	42	at	at	IN
cord-321150-ev6acl7b	80	43	http://mol.ax/delta	http://mol.ax/delta	NNP
cord-321150-ev6acl7b	80	44	.	.	.
cord-321150-ev6acl7b	81	1	For	for	IN
cord-321150-ev6acl7b	81	2	example	example	NN
cord-321150-ev6acl7b	81	3	,	,	,
cord-321150-ev6acl7b	81	4	the	the	DT
cord-321150-ev6acl7b	81	5	sequence	sequence	NN
cord-321150-ev6acl7b	81	6	"	"	``
cord-321150-ev6acl7b	81	7	AAAAABB	AAAAABB	NNP
cord-321150-ev6acl7b	81	8	BBABBBABBBAAAA	BBABBBABBBAAAA	NNP
cord-321150-ev6acl7b	81	9	"	"	''
cord-321150-ev6acl7b	81	10	can	can	MD
cord-321150-ev6acl7b	81	11	be	be	VB
cord-321150-ev6acl7b	81	12	typed	type	VBN
cord-321150-ev6acl7b	81	13	in	in	IN
cord-321150-ev6acl7b	81	14	and	and	CC
cord-321150-ev6acl7b	81	15	the	the	DT
cord-321150-ev6acl7b	81	16	calculator	calculator	NN
cord-321150-ev6acl7b	81	17	reports	report	VBZ
cord-321150-ev6acl7b	81	18	that	that	IN
cord-321150-ev6acl7b	81	19	the	the	DT
cord-321150-ev6acl7b	81	20	clustering	clustering	NN
cord-321150-ev6acl7b	81	21	of	of	IN
cord-321150-ev6acl7b	81	22	Bs	Bs	NNP
cord-321150-ev6acl7b	81	23	in	in	IN
cord-321150-ev6acl7b	81	24	the	the	DT
cord-321150-ev6acl7b	81	25	middle	middle	NN
cord-321150-ev6acl7b	81	26	of	of	IN
cord-321150-ev6acl7b	81	27	the	the	DT
cord-321150-ev6acl7b	81	28	sequence	sequence	NN
cord-321150-ev6acl7b	81	29	is	be	VBZ
cord-321150-ev6acl7b	81	30	significant	significant	JJ
cord-321150-ev6acl7b	81	31	at	at	IN
cord-321150-ev6acl7b	81	32	P	p	NN
cord-321150-ev6acl7b	81	33	¼	¼	CD
cord-321150-ev6acl7b	81	34	0.0055	0.0055	CD
cord-321150-ev6acl7b	81	35	.	.	.
cord-321150-ev6acl7b	82	1	We	-PRON-	PRP
cord-321150-ev6acl7b	82	2	list	list	VBP
cord-321150-ev6acl7b	82	3	two	two	CD
cord-321150-ev6acl7b	82	4	practical	practical	JJ
cord-321150-ev6acl7b	82	5	example	example	NN
cord-321150-ev6acl7b	82	6	uses	use	VBZ
cord-321150-ev6acl7b	82	7	of	of	IN
cord-321150-ev6acl7b	82	8	our	-PRON-	PRP$
cord-321150-ev6acl7b	82	9	nonparametric	nonparametric	JJ
cord-321150-ev6acl7b	82	10	clustering	clustering	NN
cord-321150-ev6acl7b	82	11	statistic	statistic	NN
cord-321150-ev6acl7b	82	12	.	.	.
cord-321150-ev6acl7b	83	1	First	first	RB
cord-321150-ev6acl7b	83	2	,	,	,
cord-321150-ev6acl7b	83	3	seasonality	seasonality	NN
cord-321150-ev6acl7b	83	4	can	can	MD
cord-321150-ev6acl7b	83	5	be	be	VB
cord-321150-ev6acl7b	83	6	assessed	assess	VBN
cord-321150-ev6acl7b	83	7	nonparametrically	nonparametrically	RB
cord-321150-ev6acl7b	83	8	.	.	.
cord-321150-ev6acl7b	84	1	If	if	IN
cord-321150-ev6acl7b	84	2	a	a	DT
cord-321150-ev6acl7b	84	3	particular	particular	JJ
cord-321150-ev6acl7b	84	4	population	population	NN
cord-321150-ev6acl7b	84	5	behavior	behavior	NN
cord-321150-ev6acl7b	84	6	or	or	CC
cord-321150-ev6acl7b	84	7	climatic	climatic	JJ
cord-321150-ev6acl7b	84	8	characteristic	characteristic	NN
cord-321150-ev6acl7b	84	9	(	(	-LRB-
cord-321150-ev6acl7b	84	10	e.g.	e.g.	RB
cord-321150-ev6acl7b	84	11	,	,	,
cord-321150-ev6acl7b	84	12	rain	rain	NN
cord-321150-ev6acl7b	84	13	or	or	CC
cord-321150-ev6acl7b	84	14	no	no	DT
cord-321150-ev6acl7b	84	15	rain	rain	NN
cord-321150-ev6acl7b	84	16	)	)	-RRB-
cord-321150-ev6acl7b	84	17	can	can	MD
cord-321150-ev6acl7b	84	18	be	be	VB
cord-321150-ev6acl7b	84	19	noted	note	VBN
cord-321150-ev6acl7b	84	20	to	to	TO
cord-321150-ev6acl7b	84	21	occur	occur	VB
cord-321150-ev6acl7b	84	22	or	or	CC
cord-321150-ev6acl7b	84	23	not	not	RB
cord-321150-ev6acl7b	84	24	occur	occur	VB
cord-321150-ev6acl7b	84	25	every	every	DT
cord-321150-ev6acl7b	84	26	day	day	NN
cord-321150-ev6acl7b	84	27	,	,	,
cord-321150-ev6acl7b	84	28	then	then	RB
cord-321150-ev6acl7b	84	29	an	an	DT
cord-321150-ev6acl7b	84	30	ordered	order	VBN
cord-321150-ev6acl7b	84	31	sequence	sequence	NN
cord-321150-ev6acl7b	84	32	of	of	IN
cord-321150-ev6acl7b	84	33	the	the	DT
cord-321150-ev6acl7b	84	34	days	day	NNS
cord-321150-ev6acl7b	84	35	in	in	IN
cord-321150-ev6acl7b	84	36	the	the	DT
cord-321150-ev6acl7b	84	37	year	year	NN
cord-321150-ev6acl7b	84	38	will	will	MD
cord-321150-ev6acl7b	84	39	show	show	VB
cord-321150-ev6acl7b	84	40	if	if	IN
cord-321150-ev6acl7b	84	41	the	the	DT
cord-321150-ev6acl7b	84	42	occurrence	occurrence	NN
cord-321150-ev6acl7b	84	43	of	of	IN
cord-321150-ev6acl7b	84	44	one	one	CD
cord-321150-ev6acl7b	84	45	of	of	IN
cord-321150-ev6acl7b	84	46	the	the	DT
cord-321150-ev6acl7b	84	47	behaviors	behavior	NNS
cord-321150-ev6acl7b	84	48	is	be	VBZ
cord-321150-ev6acl7b	84	49	clustered	cluster	VBN
cord-321150-ev6acl7b	84	50	and	and	CC
cord-321150-ev6acl7b	84	51	thus	thus	RB
cord-321150-ev6acl7b	84	52	if	if	IN
cord-321150-ev6acl7b	84	53	this	this	DT
cord-321150-ev6acl7b	84	54	feature	feature	NN
cord-321150-ev6acl7b	84	55	was	be	VBD
cord-321150-ev6acl7b	84	56	seasonal	seasonal	JJ
cord-321150-ev6acl7b	84	57	in	in	IN
cord-321150-ev6acl7b	84	58	that	that	DT
cord-321150-ev6acl7b	84	59	one	one	CD
cord-321150-ev6acl7b	84	60	year	year	NN
cord-321150-ev6acl7b	84	61	.	.	.
cord-321150-ev6acl7b	85	1	As	as	IN
cord-321150-ev6acl7b	85	2	a	a	DT
cord-321150-ev6acl7b	85	3	second	second	JJ
cord-321150-ev6acl7b	85	4	example	example	NN
cord-321150-ev6acl7b	85	5	,	,	,
cord-321150-ev6acl7b	85	6	when	when	WRB
cord-321150-ev6acl7b	85	7	a	a	DT
cord-321150-ev6acl7b	85	8	process	process	NN
cord-321150-ev6acl7b	85	9	is	be	VBZ
cord-321150-ev6acl7b	85	10	expected	expect	VBN
cord-321150-ev6acl7b	85	11	to	to	TO
cord-321150-ev6acl7b	85	12	behave	behave	VB
cord-321150-ev6acl7b	85	13	at	at	IN
cord-321150-ev6acl7b	85	14	an	an	DT
cord-321150-ev6acl7b	85	15	intermediate	intermediate	JJ
cord-321150-ev6acl7b	85	16	range	range	NN
cord-321150-ev6acl7b	85	17	or	or	CC
cord-321150-ev6acl7b	85	18	when	when	WRB
cord-321150-ev6acl7b	85	19	an	an	DT
cord-321150-ev6acl7b	85	20	observation	observation	NN
cord-321150-ev6acl7b	85	21	is	be	VBZ
cord-321150-ev6acl7b	85	22	expected	expect	VBN
cord-321150-ev6acl7b	85	23	to	to	TO
cord-321150-ev6acl7b	85	24	be	be	VB
cord-321150-ev6acl7b	85	25	made	make	VBN
cord-321150-ev6acl7b	85	26	at	at	IN
cord-321150-ev6acl7b	85	27	intermediate	intermediate	JJ
cord-321150-ev6acl7b	85	28	values	value	NNS
cord-321150-ev6acl7b	85	29	only	only	RB
cord-321150-ev6acl7b	85	30	,	,	,
cord-321150-ev6acl7b	85	31	this	this	DT
cord-321150-ev6acl7b	85	32	pattern	pattern	NN
cord-321150-ev6acl7b	85	33	can	can	MD
cord-321150-ev6acl7b	85	34	be	be	VB
cord-321150-ev6acl7b	85	35	tested	test	VBN
cord-321150-ev6acl7b	85	36	for	for	IN
cord-321150-ev6acl7b	85	37	nonparametrically	nonparametrically	RB
cord-321150-ev6acl7b	85	38	.	.	.
cord-321150-ev6acl7b	86	1	Dengue	dengue	NN
cord-321150-ev6acl7b	86	2	virus	virus	NN
cord-321150-ev6acl7b	86	3	does	do	VBZ
cord-321150-ev6acl7b	86	4	not	not	RB
cord-321150-ev6acl7b	86	5	cause	cause	VB
cord-321150-ev6acl7b	86	6	severity	severity	NN
cord-321150-ev6acl7b	86	7	for	for	IN
cord-321150-ev6acl7b	86	8	all	all	DT
cord-321150-ev6acl7b	86	9	ages	age	NNS
cord-321150-ev6acl7b	86	10	equally	equally	RB
cord-321150-ev6acl7b	86	11	.	.	.
cord-321150-ev6acl7b	87	1	One	one	PRP
cord-321150-ev6acl7b	87	2	's	's	POS
cord-321150-ev6acl7b	87	3	first	first	JJ
cord-321150-ev6acl7b	87	4	dengue	dengue	NN
cord-321150-ev6acl7b	87	5	infection	infection	NN
cord-321150-ev6acl7b	87	6	,	,	,
cord-321150-ev6acl7b	87	7	occurring	occur	VBG
cord-321150-ev6acl7b	87	8	during	during	IN
cord-321150-ev6acl7b	87	9	childhood	childhood	NN
cord-321150-ev6acl7b	87	10	,	,	,
cord-321150-ev6acl7b	87	11	is	be	VBZ
cord-321150-ev6acl7b	87	12	typically	typically	RB
cord-321150-ev6acl7b	87	13	nonsevere	nonsevere	JJ
cord-321150-ev6acl7b	87	14	;	;	,
cord-321150-ev6acl7b	87	15	secondary	secondary	JJ
cord-321150-ev6acl7b	87	16	infections	infection	NNS
cord-321150-ev6acl7b	87	17	,	,	,
cord-321150-ev6acl7b	87	18	seen	see	VBN
cord-321150-ev6acl7b	87	19	in	in	IN
cord-321150-ev6acl7b	87	20	older	old	JJR
cord-321150-ev6acl7b	87	21	children	child	NNS
cord-321150-ev6acl7b	87	22	and	and	CC
cord-321150-ev6acl7b	87	23	teenagers	teenager	NNS
cord-321150-ev6acl7b	87	24	,	,	,
cord-321150-ev6acl7b	87	25	have	have	VBP
cord-321150-ev6acl7b	87	26	a	a	DT
cord-321150-ev6acl7b	87	27	higher	high	JJR
cord-321150-ev6acl7b	87	28	chance	chance	NN
cord-321150-ev6acl7b	87	29	of	of	IN
cord-321150-ev6acl7b	87	30	severity	severity	NN
cord-321150-ev6acl7b	87	31	,	,	,
cord-321150-ev6acl7b	87	32	whereas	whereas	IN
cord-321150-ev6acl7b	87	33	tertiary	tertiary	JJ
cord-321150-ev6acl7b	87	34	and	and	CC
cord-321150-ev6acl7b	87	35	subsequent	subsequent	JJ
cord-321150-ev6acl7b	87	36	infections	infection	NNS
cord-321150-ev6acl7b	87	37	,	,	,
cord-321150-ev6acl7b	87	38	those	those	DT
cord-321150-ev6acl7b	87	39	that	that	WDT
cord-321150-ev6acl7b	87	40	would	would	MD
cord-321150-ev6acl7b	87	41	occur	occur	VB
cord-321150-ev6acl7b	87	42	in	in	IN
cord-321150-ev6acl7b	87	43	older	old	JJR
cord-321150-ev6acl7b	87	44	age	age	NN
cord-321150-ev6acl7b	87	45	groups	group	NNS
cord-321150-ev6acl7b	87	46	,	,	,
cord-321150-ev6acl7b	87	47	are	be	VBP
cord-321150-ev6acl7b	87	48	thought	think	VBN
cord-321150-ev6acl7b	87	49	to	to	TO
cord-321150-ev6acl7b	87	50	be	be	VB
cord-321150-ev6acl7b	87	51	rare	rare	JJ
cord-321150-ev6acl7b	87	52	and/or	and/or	CC
cord-321150-ev6acl7b	87	53	subclinical	subclinical	JJ
cord-321150-ev6acl7b	87	54	(	(	-LRB-
cord-321150-ev6acl7b	87	55	Gubler	Gubler	NNP
cord-321150-ev6acl7b	87	56	1998	1998	CD
cord-321150-ev6acl7b	87	57	;	;	:
cord-321150-ev6acl7b	87	58	Wikramaratna	Wikramaratna	NNP
cord-321150-ev6acl7b	87	59	et	et	NNP
cord-321150-ev6acl7b	87	60	al	al	NNP
cord-321150-ev6acl7b	87	61	.	.	NNP
cord-321150-ev6acl7b	87	62	2010	2010	CD
cord-321150-ev6acl7b	87	63	)	)	-RRB-
cord-321150-ev6acl7b	87	64	.	.	.
cord-321150-ev6acl7b	88	1	Thus	thus	RB
cord-321150-ev6acl7b	88	2	,	,	,
cord-321150-ev6acl7b	88	3	disease	disease	NN
cord-321150-ev6acl7b	88	4	severity	severity	NN
cord-321150-ev6acl7b	88	5	in	in	IN
cord-321150-ev6acl7b	88	6	a	a	DT
cord-321150-ev6acl7b	88	7	surveillance	surveillance	NN
cord-321150-ev6acl7b	88	8	system	system	NN
cord-321150-ev6acl7b	88	9	should	should	MD
cord-321150-ev6acl7b	88	10	be	be	VB
cord-321150-ev6acl7b	88	11	seen	see	VBN
cord-321150-ev6acl7b	88	12	in	in	IN
cord-321150-ev6acl7b	88	13	the	the	DT
cord-321150-ev6acl7b	88	14	intermediate	intermediate	JJ
cord-321150-ev6acl7b	88	15	age	age	NN
cord-321150-ev6acl7b	88	16	ranges	range	NNS
cord-321150-ev6acl7b	88	17	,	,	,
cord-321150-ev6acl7b	88	18	and	and	CC
cord-321150-ev6acl7b	88	19	this	this	DT
cord-321150-ev6acl7b	88	20	can	can	MD
cord-321150-ev6acl7b	88	21	be	be	VB
cord-321150-ev6acl7b	88	22	tested	test	VBN
cord-321150-ev6acl7b	88	23	for	for	IN
cord-321150-ev6acl7b	88	24	nonparametrically	nonparametrically	RB
cord-321150-ev6acl7b	88	25	by	by	IN
cord-321150-ev6acl7b	88	26	noting	note	VBG
cord-321150-ev6acl7b	88	27	if	if	IN
cord-321150-ev6acl7b	88	28	each	each	DT
cord-321150-ev6acl7b	88	29	age	age	NN
cord-321150-ev6acl7b	88	30	band	band	NN
cord-321150-ev6acl7b	88	31	is	be	VBZ
cord-321150-ev6acl7b	88	32	overrepresented	overrepresente	VBN
cord-321150-ev6acl7b	88	33	or	or	CC
cord-321150-ev6acl7b	88	34	underrepresented	underrepresente	VBN
cord-321150-ev6acl7b	88	35	in	in	IN
cord-321150-ev6acl7b	88	36	the	the	DT
cord-321150-ev6acl7b	88	37	pool	pool	NN
cord-321150-ev6acl7b	88	38	of	of	IN
cord-321150-ev6acl7b	88	39	patients	patient	NNS
cord-321150-ev6acl7b	88	40	experiencing	experience	VBG
cord-321150-ev6acl7b	88	41	dengue	dengue	NN
cord-321150-ev6acl7b	88	42	-	-	HYPH
cord-321150-ev6acl7b	88	43	like	like	JJ
cord-321150-ev6acl7b	88	44	severe	severe	JJ
cord-321150-ev6acl7b	88	45	disease	disease	NN
cord-321150-ev6acl7b	88	46	in	in	IN
cord-321150-ev6acl7b	88	47	a	a	DT
cord-321150-ev6acl7b	88	48	hospital	hospital	NN
cord-321150-ev6acl7b	88	49	.	.	.
cord-321150-ev6acl7b	89	1	In	in	IN
cord-321150-ev6acl7b	89	2	fact	fact	NN
cord-321150-ev6acl7b	89	3	,	,	,
cord-321150-ev6acl7b	89	4	since	since	IN
cord-321150-ev6acl7b	89	5	all	all	DT
cord-321150-ev6acl7b	89	6	that	that	WDT
cord-321150-ev6acl7b	89	7	is	be	VBZ
cord-321150-ev6acl7b	89	8	required	require	VBN
cord-321150-ev6acl7b	89	9	here	here	RB
cord-321150-ev6acl7b	89	10	is	be	VBZ
cord-321150-ev6acl7b	89	11	a	a	DT
cord-321150-ev6acl7b	89	12	symptoms	symptom	NNS
cord-321150-ev6acl7b	89	13	description	description	NN
cord-321150-ev6acl7b	89	14	,	,	,
cord-321150-ev6acl7b	89	15	the	the	DT
cord-321150-ev6acl7b	89	16	identification	identification	NN
cord-321150-ev6acl7b	89	17	of	of	IN
cord-321150-ev6acl7b	89	18	a	a	DT
cord-321150-ev6acl7b	89	19	vulnerable	vulnerable	JJ
cord-321150-ev6acl7b	89	20	age	age	NN
cord-321150-ev6acl7b	89	21	range	range	NN
cord-321150-ev6acl7b	89	22	can	can	MD
cord-321150-ev6acl7b	89	23	be	be	VB
cord-321150-ev6acl7b	89	24	done	do	VBN
cord-321150-ev6acl7b	89	25	for	for	IN
cord-321150-ev6acl7b	89	26	any	any	DT
cord-321150-ev6acl7b	89	27	set	set	NN
cord-321150-ev6acl7b	89	28	of	of	IN
cord-321150-ev6acl7b	89	29	symptoms	symptom	NNS
cord-321150-ev6acl7b	89	30	.	.	.
cord-321150-ev6acl7b	90	1	To	to	TO
cord-321150-ev6acl7b	90	2	illustrate	illustrate	VB
cord-321150-ev6acl7b	90	3	improved	improved	JJ
cord-321150-ev6acl7b	90	4	runtimes	runtime	NNS
cord-321150-ev6acl7b	90	5	and	and	CC
cord-321150-ev6acl7b	90	6	memory	memory	NN
cord-321150-ev6acl7b	90	7	usage	usage	NN
cord-321150-ev6acl7b	90	8	of	of	IN
cord-321150-ev6acl7b	90	9	the	the	DT
cord-321150-ev6acl7b	90	10	new	new	JJ
cord-321150-ev6acl7b	90	11	3SEQ	3seq	CD
cord-321150-ev6acl7b	90	12	algorithm	algorithm	NN
cord-321150-ev6acl7b	90	13	,	,	,
cord-321150-ev6acl7b	90	14	we	-PRON-	PRP
cord-321150-ev6acl7b	90	15	searched	search	VBD
cord-321150-ev6acl7b	90	16	for	for	IN
cord-321150-ev6acl7b	90	17	recombinants	recombinant	NNS
cord-321150-ev6acl7b	90	18	among	among	IN
cord-321150-ev6acl7b	90	19	large	large	JJ
cord-321150-ev6acl7b	90	20	sequence	sequence	NN
cord-321150-ev6acl7b	90	21	data	data	NN
cord-321150-ev6acl7b	90	22	sets	set	NNS
cord-321150-ev6acl7b	90	23	of	of	IN
cord-321150-ev6acl7b	90	24	dengue	dengue	NN
cord-321150-ev6acl7b	90	25	virus	virus	NN
cord-321150-ev6acl7b	90	26	serotype	serotype	NN
cord-321150-ev6acl7b	90	27	2	2	CD
cord-321150-ev6acl7b	90	28	,	,	,
cord-321150-ev6acl7b	90	29	Ebola	Ebola	NNP
cord-321150-ev6acl7b	90	30	virus	virus	NN
cord-321150-ev6acl7b	90	31	,	,	,
cord-321150-ev6acl7b	90	32	the	the	DT
cord-321150-ev6acl7b	90	33	coronavirus	coronavirus	NN
cord-321150-ev6acl7b	90	34	responsible	responsible	JJ
cord-321150-ev6acl7b	90	35	for	for	IN
cord-321150-ev6acl7b	90	36	Middle	Middle	NNP
cord-321150-ev6acl7b	90	37	-	-	HYPH
cord-321150-ev6acl7b	90	38	East	East	NNP
cord-321150-ev6acl7b	90	39	Respiratory	Respiratory	NNP
cord-321150-ev6acl7b	90	40	Syndrome	Syndrome	NNP
cord-321150-ev6acl7b	90	41	(	(	-LRB-
cord-321150-ev6acl7b	90	42	MERS	MERS	NNP
cord-321150-ev6acl7b	90	43	)	)	-RRB-
cord-321150-ev6acl7b	90	44	and	and	CC
cord-321150-ev6acl7b	90	45	Zika	Zika	NNP
cord-321150-ev6acl7b	90	46	virus	virus	NN
cord-321150-ev6acl7b	90	47	;	;	:
cord-321150-ev6acl7b	90	48	see	see	VB
cord-321150-ev6acl7b	90	49	table	table	NN
cord-321150-ev6acl7b	90	50	1	1	CD
cord-321150-ev6acl7b	90	51	.	.	.
cord-321150-ev6acl7b	91	1	Full	full	JJ
cord-321150-ev6acl7b	91	2	-	-	HYPH
cord-321150-ev6acl7b	91	3	length	length	NN
cord-321150-ev6acl7b	91	4	Zika	Zika	NNP
cord-321150-ev6acl7b	91	5	virus	virus	NN
cord-321150-ev6acl7b	91	6	sequences	sequence	NNS
cord-321150-ev6acl7b	91	7	were	be	VBD
cord-321150-ev6acl7b	91	8	downloaded	download	VBN
cord-321150-ev6acl7b	91	9	from	from	IN
cord-321150-ev6acl7b	91	10	the	the	DT
cord-321150-ev6acl7b	91	11	NCBI	NCBI	NNP
cord-321150-ev6acl7b	91	12	Viral	Viral	NNP
cord-321150-ev6acl7b	91	13	Variation	Variation	NNP
cord-321150-ev6acl7b	91	14	Resource	resource	NN
cord-321150-ev6acl7b	91	15	(	(	-LRB-
cord-321150-ev6acl7b	91	16	Brister	Brister	NNP
cord-321150-ev6acl7b	91	17	et	et	NNP
cord-321150-ev6acl7b	91	18	al	al	NNP
cord-321150-ev6acl7b	91	19	.	.	NNP
cord-321150-ev6acl7b	91	20	2014	2014	CD
cord-321150-ev6acl7b	91	21	)	)	-RRB-
cord-321150-ev6acl7b	91	22	and	and	CC
cord-321150-ev6acl7b	91	23	aligned	align	VBN
cord-321150-ev6acl7b	91	24	with	with	IN
cord-321150-ev6acl7b	91	25	Muscle	muscle	NN
cord-321150-ev6acl7b	91	26	v3.8	v3.8	NN
cord-321150-ev6acl7b	91	27	(	(	-LRB-
cord-321150-ev6acl7b	91	28	Edgar	Edgar	NNP
cord-321150-ev6acl7b	91	29	2004	2004	CD
cord-321150-ev6acl7b	91	30	)	)	-RRB-
cord-321150-ev6acl7b	91	31	.	.	.
cord-321150-ev6acl7b	92	1	Full	full	JJ
cord-321150-ev6acl7b	92	2	-	-	HYPH
cord-321150-ev6acl7b	92	3	length	length	NN
cord-321150-ev6acl7b	92	4	sequences	sequence	NNS
cord-321150-ev6acl7b	92	5	of	of	IN
cord-321150-ev6acl7b	92	6	Ebola	Ebola	NNP
cord-321150-ev6acl7b	92	7	virus	virus	NN
cord-321150-ev6acl7b	92	8	,	,	,
cord-321150-ev6acl7b	92	9	dengue	dengue	NN
cord-321150-ev6acl7b	92	10	virus	virus	NN
cord-321150-ev6acl7b	92	11	serotype	serotype	NN
cord-321150-ev6acl7b	92	12	2	2	CD
cord-321150-ev6acl7b	92	13	,	,	,
cord-321150-ev6acl7b	92	14	and	and	CC
cord-321150-ev6acl7b	92	15	the	the	DT
cord-321150-ev6acl7b	92	16	coronavirus	coronavirus	NN
cord-321150-ev6acl7b	92	17	responsible	responsible	JJ
cord-321150-ev6acl7b	92	18	for	for	IN
cord-321150-ev6acl7b	92	19	Middle	Middle	NNP
cord-321150-ev6acl7b	92	20	-	-	HYPH
cord-321150-ev6acl7b	92	21	East	East	NNP
cord-321150-ev6acl7b	92	22	Respiratory	Respiratory	NNP
cord-321150-ev6acl7b	92	23	Syndrome	Syndrome	NNP
cord-321150-ev6acl7b	92	24	(	(	-LRB-
cord-321150-ev6acl7b	92	25	MERS	MERS	NNP
cord-321150-ev6acl7b	92	26	)	)	-RRB-
cord-321150-ev6acl7b	92	27	were	be	VBD
cord-321150-ev6acl7b	92	28	downloaded	download	VBN
cord-321150-ev6acl7b	92	29	from	from	IN
cord-321150-ev6acl7b	92	30	NCBI	NCBI	NNP
cord-321150-ev6acl7b	92	31	and	and	CC
cord-321150-ev6acl7b	92	32	aligned	align	VBN
cord-321150-ev6acl7b	92	33	with	with	IN
cord-321150-ev6acl7b	92	34	the	the	DT
cord-321150-ev6acl7b	92	35	online	online	JJ
cord-321150-ev6acl7b	92	36	NCBI	NCBI	NNP
cord-321150-ev6acl7b	92	37	alignment	alignment	NN
cord-321150-ev6acl7b	92	38	tools	tool	NNS
cord-321150-ev6acl7b	92	39	.	.	.
cord-321150-ev6acl7b	93	1	Ebola	Ebola	NNP
cord-321150-ev6acl7b	93	2	virus	virus	NN
cord-321150-ev6acl7b	93	3	sequences	sequence	NNS
cord-321150-ev6acl7b	93	4	were	be	VBD
cord-321150-ev6acl7b	93	5	restricted	restrict	VBN
cord-321150-ev6acl7b	93	6	to	to	IN
cord-321150-ev6acl7b	93	7	human	human	JJ
cord-321150-ev6acl7b	93	8	viruses	virus	NNS
cord-321150-ev6acl7b	93	9	sampled	sample	VBN
cord-321150-ev6acl7b	93	10	in	in	IN
cord-321150-ev6acl7b	93	11	Africa	Africa	NNP
cord-321150-ev6acl7b	93	12	after	after	IN
cord-321150-ev6acl7b	93	13	December	December	NNP
cord-321150-ev6acl7b	93	14	1	1	CD
cord-321150-ev6acl7b	93	15	,	,	,
cord-321150-ev6acl7b	93	16	2013	2013	CD
cord-321150-ev6acl7b	93	17	.	.	.
cord-321150-ev6acl7b	94	1	Dengue	dengue	NN
cord-321150-ev6acl7b	94	2	virus	virus	NN
cord-321150-ev6acl7b	94	3	serotype	serotype	NN
cord-321150-ev6acl7b	94	4	2	2	CD
cord-321150-ev6acl7b	94	5	was	be	VBD
cord-321150-ev6acl7b	94	6	chosen	choose	VBN
cord-321150-ev6acl7b	94	7	to	to	TO
cord-321150-ev6acl7b	94	8	include	include	VB
cord-321150-ev6acl7b	94	9	a	a	DT
cord-321150-ev6acl7b	94	10	particularly	particularly	RB
cord-321150-ev6acl7b	94	11	large	large	JJ
cord-321150-ev6acl7b	94	12	and	and	CC
cord-321150-ev6acl7b	94	13	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	94	14	alignment	alignment	NN
cord-321150-ev6acl7b	94	15	.	.	.
cord-321150-ev6acl7b	95	1	As	as	IN
cord-321150-ev6acl7b	95	2	negative	negative	JJ
cord-321150-ev6acl7b	95	3	controls	control	NNS
cord-321150-ev6acl7b	95	4	,	,	,
cord-321150-ev6acl7b	95	5	we	-PRON-	PRP
cord-321150-ev6acl7b	95	6	considered	consider	VBD
cord-321150-ev6acl7b	95	7	segments	segment	NNS
cord-321150-ev6acl7b	95	8	PB2	PB2	NNP
cord-321150-ev6acl7b	95	9	and	and	CC
cord-321150-ev6acl7b	95	10	NS	NS	NNP
cord-321150-ev6acl7b	95	11	from	from	IN
cord-321150-ev6acl7b	95	12	avian	avian	JJ
cord-321150-ev6acl7b	95	13	influenza	influenza	NN
cord-321150-ev6acl7b	95	14	A	a	DT
cord-321150-ev6acl7b	95	15	virus	virus	NN
cord-321150-ev6acl7b	95	16	,	,	,
cord-321150-ev6acl7b	95	17	subtype	subtype	NN
cord-321150-ev6acl7b	95	18	H5N1	H5N1	NNP
cord-321150-ev6acl7b	95	19	,	,	,
cord-321150-ev6acl7b	95	20	originally	originally	RB
cord-321150-ev6acl7b	95	21	analyzed	analyze	VBN
cord-321150-ev6acl7b	95	22	in	in	IN
cord-321150-ev6acl7b	95	23	Boni	Boni	NNP
cord-321150-ev6acl7b	95	24	et	et	FW
cord-321150-ev6acl7b	95	25	al	al	NNP
cord-321150-ev6acl7b	95	26	.	.	.
cord-321150-ev6acl7b	96	1	(	(	-LRB-
cord-321150-ev6acl7b	96	2	2010	2010	CD
cord-321150-ev6acl7b	96	3	)	)	-RRB-
cord-321150-ev6acl7b	96	4	;	;	:
cord-321150-ev6acl7b	96	5	only	only	RB
cord-321150-ev6acl7b	96	6	sequences	sequence	NNS
cord-321150-ev6acl7b	96	7	from	from	IN
cord-321150-ev6acl7b	96	8	the	the	DT
cord-321150-ev6acl7b	96	9	Influenza	Influenza	NNP
cord-321150-ev6acl7b	96	10	Genome	Genome	NNP
cord-321150-ev6acl7b	96	11	Sequencing	Sequencing	NNP
cord-321150-ev6acl7b	96	12	Project	Project	NNP
cord-321150-ev6acl7b	96	13	were	be	VBD
cord-321150-ev6acl7b	96	14	included	include	VBN
cord-321150-ev6acl7b	96	15	FIG	fig	NN
cord-321150-ev6acl7b	96	16	.	.	.
cord-321150-ev6acl7b	97	1	2	2	LS
cord-321150-ev6acl7b	97	2	.	.	.
cord-321150-ev6acl7b	98	1	Screenshot	Screenshot	NNP
cord-321150-ev6acl7b	98	2	of	of	IN
cord-321150-ev6acl7b	98	3	new	new	JJ
cord-321150-ev6acl7b	98	4	online	online	JJ
cord-321150-ev6acl7b	98	5	tool	tool	NN
cord-321150-ev6acl7b	98	6	that	that	WDT
cord-321150-ev6acl7b	98	7	can	can	MD
cord-321150-ev6acl7b	98	8	be	be	VB
cord-321150-ev6acl7b	98	9	used	use	VBN
cord-321150-ev6acl7b	98	10	to	to	TO
cord-321150-ev6acl7b	98	11	calculate	calculate	VB
cord-321150-ev6acl7b	98	12	P	p	NN
cord-321150-ev6acl7b	98	13	values	value	NNS
cord-321150-ev6acl7b	98	14	testing	test	VBG
cord-321150-ev6acl7b	98	15	the	the	DT
cord-321150-ev6acl7b	98	16	hypothesis	hypothesis	NN
cord-321150-ev6acl7b	98	17	of	of	IN
cord-321150-ev6acl7b	98	18	whether	whether	IN
cord-321150-ev6acl7b	98	19	one	one	CD
cord-321150-ev6acl7b	98	20	binary	binary	JJ
cord-321150-ev6acl7b	98	21	outcome	outcome	NN
cord-321150-ev6acl7b	98	22	clusters	cluster	NNS
cord-321150-ev6acl7b	98	23	in	in	IN
cord-321150-ev6acl7b	98	24	the	the	DT
cord-321150-ev6acl7b	98	25	middle	middle	NN
cord-321150-ev6acl7b	98	26	of	of	IN
cord-321150-ev6acl7b	98	27	a	a	DT
cord-321150-ev6acl7b	98	28	(	(	-LRB-
cord-321150-ev6acl7b	98	29	1D	1d	NN
cord-321150-ev6acl7b	98	30	)	)	-RRB-
cord-321150-ev6acl7b	98	31	sequence	sequence	NN
cord-321150-ev6acl7b	98	32	of	of	IN
cord-321150-ev6acl7b	98	33	binary	binary	JJ
cord-321150-ev6acl7b	98	34	outcomes	outcome	NNS
cord-321150-ev6acl7b	98	35	.	.	.
cord-321150-ev6acl7b	99	1	One	one	CD
cord-321150-ev6acl7b	99	2	input	input	NN
cord-321150-ev6acl7b	99	3	method	method	NN
cord-321150-ev6acl7b	99	4	is	be	VBZ
cord-321150-ev6acl7b	99	5	simply	simply	RB
cord-321150-ev6acl7b	99	6	typing	type	VBG
cord-321150-ev6acl7b	99	7	two	two	CD
cord-321150-ev6acl7b	99	8	characters	character	NNS
cord-321150-ev6acl7b	99	9	in	in	IN
cord-321150-ev6acl7b	99	10	a	a	DT
cord-321150-ev6acl7b	99	11	text	text	NN
cord-321150-ev6acl7b	99	12	box	box	NN
cord-321150-ev6acl7b	99	13	(	(	-LRB-
cord-321150-ev6acl7b	99	14	above	above	RB
cord-321150-ev6acl7b	99	15	,	,	,
cord-321150-ev6acl7b	99	16	"	"	``
cord-321150-ev6acl7b	99	17	U	U	NNP
cord-321150-ev6acl7b	99	18	"	"	''
cord-321150-ev6acl7b	99	19	for	for	IN
cord-321150-ev6acl7b	99	20	up	up	RB
cord-321150-ev6acl7b	99	21	and	and	CC
cord-321150-ev6acl7b	99	22	"	"	``
cord-321150-ev6acl7b	99	23	D	D	NNP
cord-321150-ev6acl7b	99	24	"	"	''
cord-321150-ev6acl7b	99	25	for	for	IN
cord-321150-ev6acl7b	99	26	down	down	RB
cord-321150-ev6acl7b	99	27	)	)	-RRB-
cord-321150-ev6acl7b	99	28	and	and	CC
cord-321150-ev6acl7b	99	29	letting	let	VBG
cord-321150-ev6acl7b	99	30	the	the	DT
cord-321150-ev6acl7b	99	31	calculator	calculator	NN
cord-321150-ev6acl7b	99	32	return	return	VB
cord-321150-ev6acl7b	99	33	a	a	DT
cord-321150-ev6acl7b	99	34	P	p	NN
cord-321150-ev6acl7b	99	35	value	value	NN
cord-321150-ev6acl7b	99	36	showing	show	VBG
cord-321150-ev6acl7b	99	37	whether	whether	IN
cord-321150-ev6acl7b	99	38	one	one	CD
cord-321150-ev6acl7b	99	39	type	type	NN
cord-321150-ev6acl7b	99	40	of	of	IN
cord-321150-ev6acl7b	99	41	character	character	NN
cord-321150-ev6acl7b	99	42	is	be	VBZ
cord-321150-ev6acl7b	99	43	clustered	cluster	VBN
cord-321150-ev6acl7b	99	44	in	in	IN
cord-321150-ev6acl7b	99	45	the	the	DT
cord-321150-ev6acl7b	99	46	middle	middle	NN
cord-321150-ev6acl7b	99	47	.	.	.
cord-321150-ev6acl7b	100	1	To	to	TO
cord-321150-ev6acl7b	100	2	test	test	VB
cord-321150-ev6acl7b	100	3	whether	whether	IN
cord-321150-ev6acl7b	100	4	the	the	DT
cord-321150-ev6acl7b	100	5	other	other	JJ
cord-321150-ev6acl7b	100	6	type	type	NN
cord-321150-ev6acl7b	100	7	of	of	IN
cord-321150-ev6acl7b	100	8	character	character	NN
cord-321150-ev6acl7b	100	9	is	be	VBZ
cord-321150-ev6acl7b	100	10	clustered	cluster	VBN
cord-321150-ev6acl7b	100	11	,	,	,
cord-321150-ev6acl7b	100	12	the	the	DT
cord-321150-ev6acl7b	100	13	"	"	``
cord-321150-ev6acl7b	100	14	SWAP	swap	NN
cord-321150-ev6acl7b	100	15	"	"	''
cord-321150-ev6acl7b	100	16	button	button	NN
cord-321150-ev6acl7b	100	17	can	can	MD
cord-321150-ev6acl7b	100	18	be	be	VB
cord-321150-ev6acl7b	100	19	used	use	VBN
cord-321150-ev6acl7b	100	20	.	.	.
cord-321150-ev6acl7b	101	1	The	the	DT
cord-321150-ev6acl7b	101	2	hypergeometric	hypergeometric	JJ
cord-321150-ev6acl7b	101	3	walk	walk	NN
cord-321150-ev6acl7b	101	4	is	be	VBZ
cord-321150-ev6acl7b	101	5	shown	show	VBN
cord-321150-ev6acl7b	101	6	graphically	graphically	RB
cord-321150-ev6acl7b	101	7	.	.	.
cord-321150-ev6acl7b	102	1	The	the	DT
cord-321150-ev6acl7b	102	2	exact	exact	JJ
cord-321150-ev6acl7b	102	3	P	p	NN
cord-321150-ev6acl7b	102	4	value	value	NN
cord-321150-ev6acl7b	102	5	,	,	,
cord-321150-ev6acl7b	102	6	computed	compute	VBN
cord-321150-ev6acl7b	102	7	with	with	IN
cord-321150-ev6acl7b	102	8	the	the	DT
cord-321150-ev6acl7b	102	9	methods	method	NNS
cord-321150-ev6acl7b	102	10	in	in	IN
cord-321150-ev6acl7b	102	11	this	this	DT
cord-321150-ev6acl7b	102	12	article	article	NN
cord-321150-ev6acl7b	102	13	,	,	,
cord-321150-ev6acl7b	102	14	is	be	VBZ
cord-321150-ev6acl7b	102	15	shown	show	VBN
cord-321150-ev6acl7b	102	16	.	.	.
cord-321150-ev6acl7b	103	1	The	the	DT
cord-321150-ev6acl7b	103	2	two	two	CD
cord-321150-ev6acl7b	103	3	Hogan	Hogan	NNP
cord-321150-ev6acl7b	103	4	-	-	HYPH
cord-321150-ev6acl7b	103	5	Siegmund	Siegmund	NNP
cord-321150-ev6acl7b	103	6	approximations	approximation	NNS
cord-321150-ev6acl7b	103	7	for	for	IN
cord-321150-ev6acl7b	103	8	this	this	DT
cord-321150-ev6acl7b	103	9	P	p	NN
cord-321150-ev6acl7b	103	10	value	value	NN
cord-321150-ev6acl7b	103	11	are	be	VBP
cord-321150-ev6acl7b	103	12	also	also	RB
cord-321150-ev6acl7b	103	13	shown	show	VBN
cord-321150-ev6acl7b	103	14	.	.	.
cord-321150-ev6acl7b	104	1	Improved	Improved	NNP
cord-321150-ev6acl7b	104	2	Algorithmic	Algorithmic	NNP
cord-321150-ev6acl7b	104	3	Complexity	Complexity	NNP
cord-321150-ev6acl7b	104	4	for	for	IN
cord-321150-ev6acl7b	104	5	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	104	6	.	.	.
cord-321150-ev6acl7b	105	1	doi:10.1093	doi:10.1093	NNP
cord-321150-ev6acl7b	105	2	/	/	SYM
cord-321150-ev6acl7b	105	3	molbev	molbev	NNP
cord-321150-ev6acl7b	105	4	/	/	SYM
cord-321150-ev6acl7b	105	5	msx263	msx263	NNP
cord-321150-ev6acl7b	105	6	MBE	MBE	NNP
cord-321150-ev6acl7b	106	1	(	(	-LRB-
cord-321150-ev6acl7b	106	2	Ghedin	Ghedin	NNP
cord-321150-ev6acl7b	106	3	et	et	NNP
cord-321150-ev6acl7b	106	4	al	al	NNP
cord-321150-ev6acl7b	106	5	.	.	NNP
cord-321150-ev6acl7b	106	6	2005	2005	CD
cord-321150-ev6acl7b	106	7	)	)	-RRB-
cord-321150-ev6acl7b	106	8	and	and	CC
cord-321150-ev6acl7b	106	9	identical	identical	JJ
cord-321150-ev6acl7b	106	10	sequences	sequence	NNS
cord-321150-ev6acl7b	106	11	were	be	VBD
cord-321150-ev6acl7b	106	12	removed	remove	VBN
cord-321150-ev6acl7b	106	13	(	(	-LRB-
cord-321150-ev6acl7b	106	14	when	when	WRB
cord-321150-ev6acl7b	106	15	identical	identical	JJ
cord-321150-ev6acl7b	106	16	sequences	sequence	NNS
cord-321150-ev6acl7b	106	17	were	be	VBD
cord-321150-ev6acl7b	106	18	not	not	RB
cord-321150-ev6acl7b	106	19	removed	remove	VBN
cord-321150-ev6acl7b	106	20	,	,	,
cord-321150-ev6acl7b	106	21	results	result	NNS
cord-321150-ev6acl7b	106	22	using	use	VBG
cord-321150-ev6acl7b	106	23	the	the	DT
cord-321150-ev6acl7b	106	24	new	new	JJ
cord-321150-ev6acl7b	106	25	version	version	NN
cord-321150-ev6acl7b	106	26	of	of	IN
cord-321150-ev6acl7b	106	27	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	107	1	were	be	VBD
cord-321150-ev6acl7b	107	2	identical	identical	JJ
cord-321150-ev6acl7b	107	3	to	to	IN
cord-321150-ev6acl7b	107	4	the	the	DT
cord-321150-ev6acl7b	107	5	results	result	NNS
cord-321150-ev6acl7b	107	6	in	in	IN
cord-321150-ev6acl7b	107	7	table	table	NN
cord-321150-ev6acl7b	107	8	1	1	CD
cord-321150-ev6acl7b	107	9	of	of	IN
cord-321150-ev6acl7b	107	10	Boni	Boni	NNP
cord-321150-ev6acl7b	107	11	et	et	FW
cord-321150-ev6acl7b	107	12	al	al	NNP
cord-321150-ev6acl7b	107	13	.	.	NNP
cord-321150-ev6acl7b	107	14	2010	2010	CD
cord-321150-ev6acl7b	107	15	)	)	-RRB-
cord-321150-ev6acl7b	107	16	.	.	.
cord-321150-ev6acl7b	108	1	The	the	DT
cord-321150-ev6acl7b	108	2	new	new	JJ
cord-321150-ev6acl7b	108	3	version	version	NN
cord-321150-ev6acl7b	108	4	of	of	IN
cord-321150-ev6acl7b	108	5	the	the	DT
cord-321150-ev6acl7b	108	6	software	software	NN
cord-321150-ev6acl7b	108	7	-	-	HYPH
cord-321150-ev6acl7b	108	8	run	run	VBN
cord-321150-ev6acl7b	108	9	with	with	IN
cord-321150-ev6acl7b	108	10	a	a	DT
cord-321150-ev6acl7b	108	11	P	p	NN
cord-321150-ev6acl7b	108	12	value	value	NN
cord-321150-ev6acl7b	108	13	table	table	NN
cord-321150-ev6acl7b	108	14	of	of	IN
cord-321150-ev6acl7b	108	15	size	size	NN
cord-321150-ev6acl7b	108	16	1,200	1,200	CD
cord-321150-ev6acl7b	108	17	Â	â	CD
cord-321150-ev6acl7b	108	18	1,200	1,200	CD
cord-321150-ev6acl7b	108	19	Â	â	CD
cord-321150-ev6acl7b	108	20	1,200-had	1,200-had	CD
cord-321150-ev6acl7b	108	21	faster	fast	JJR
cord-321150-ev6acl7b	108	22	computation	computation	NN
cord-321150-ev6acl7b	108	23	times	time	NNS
cord-321150-ev6acl7b	108	24	than	than	IN
cord-321150-ev6acl7b	108	25	the	the	DT
cord-321150-ev6acl7b	108	26	previous	previous	JJ
cord-321150-ev6acl7b	108	27	version	version	NN
cord-321150-ev6acl7b	108	28	and	and	CC
cord-321150-ev6acl7b	108	29	was	be	VBD
cord-321150-ev6acl7b	108	30	able	able	JJ
cord-321150-ev6acl7b	108	31	to	to	TO
cord-321150-ev6acl7b	108	32	comfortably	comfortably	RB
cord-321150-ev6acl7b	108	33	accommodate	accommodate	VB
cord-321150-ev6acl7b	108	34	alignments	alignment	NNS
cord-321150-ev6acl7b	108	35	with	with	IN
cord-321150-ev6acl7b	108	36	thousands	thousand	NNS
cord-321150-ev6acl7b	108	37	of	of	IN
cord-321150-ev6acl7b	108	38	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	108	39	sites	site	NNS
cord-321150-ev6acl7b	108	40	.	.	.
cord-321150-ev6acl7b	109	1	Table	table	NN
cord-321150-ev6acl7b	109	2	1	1	CD
cord-321150-ev6acl7b	109	3	shows	show	VBZ
cord-321150-ev6acl7b	109	4	the	the	DT
cord-321150-ev6acl7b	109	5	results	result	NNS
cord-321150-ev6acl7b	109	6	of	of	IN
cord-321150-ev6acl7b	109	7	all	all	DT
cord-321150-ev6acl7b	109	8	runs	run	NNS
cord-321150-ev6acl7b	109	9	.	.	.
cord-321150-ev6acl7b	110	1	Note	note	VB
cord-321150-ev6acl7b	110	2	that	that	IN
cord-321150-ev6acl7b	110	3	because	because	IN
cord-321150-ev6acl7b	110	4	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	110	5	evaluates	evaluate	VBZ
cord-321150-ev6acl7b	110	6	all	all	DT
cord-321150-ev6acl7b	110	7	triplets	triplet	NNS
cord-321150-ev6acl7b	110	8	in	in	IN
cord-321150-ev6acl7b	110	9	a	a	DT
cord-321150-ev6acl7b	110	10	data	data	NN
cord-321150-ev6acl7b	110	11	set	set	NN
cord-321150-ev6acl7b	110	12	,	,	,
cord-321150-ev6acl7b	110	13	the	the	DT
cord-321150-ev6acl7b	110	14	run	run	JJ
cord-321150-ev6acl7b	110	15	time	time	NN
cord-321150-ev6acl7b	110	16	of	of	IN
cord-321150-ev6acl7b	110	17	the	the	DT
cord-321150-ev6acl7b	110	18	algorithm	algorithm	NN
cord-321150-ev6acl7b	110	19	scales	scale	VBZ
cord-321150-ev6acl7b	110	20	as	as	IN
cord-321150-ev6acl7b	110	21	the	the	DT
cord-321150-ev6acl7b	110	22	cube	cube	NN
cord-321150-ev6acl7b	110	23	of	of	IN
cord-321150-ev6acl7b	110	24	the	the	DT
cord-321150-ev6acl7b	110	25	number	number	NN
cord-321150-ev6acl7b	110	26	of	of	IN
cord-321150-ev6acl7b	110	27	sequences	sequence	NNS
cord-321150-ev6acl7b	110	28	and	and	CC
cord-321150-ev6acl7b	110	29	linearly	linearly	RB
cord-321150-ev6acl7b	110	30	with	with	IN
cord-321150-ev6acl7b	110	31	the	the	DT
cord-321150-ev6acl7b	110	32	alignment	alignment	NN
cord-321150-ev6acl7b	110	33	length	length	NN
cord-321150-ev6acl7b	110	34	.	.	.
cord-321150-ev6acl7b	111	1	As	as	IN
cord-321150-ev6acl7b	111	2	informative	informative	JJ
cord-321150-ev6acl7b	111	3	sites	site	NNS
cord-321150-ev6acl7b	111	4	can	can	MD
cord-321150-ev6acl7b	111	5	sometimes	sometimes	RB
cord-321150-ev6acl7b	111	6	be	be	VB
cord-321150-ev6acl7b	111	7	clustered	cluster	VBN
cord-321150-ev6acl7b	111	8	in	in	IN
cord-321150-ev6acl7b	111	9	short	short	JJ
cord-321150-ev6acl7b	111	10	regions	region	NNS
cord-321150-ev6acl7b	111	11	of	of	IN
cord-321150-ev6acl7b	111	12	the	the	DT
cord-321150-ev6acl7b	111	13	genome	genome	NN
cord-321150-ev6acl7b	111	14	,	,	,
cord-321150-ev6acl7b	111	15	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	111	16	will	will	MD
cord-321150-ev6acl7b	111	17	report	report	VB
cord-321150-ev6acl7b	111	18	these	these	DT
cord-321150-ev6acl7b	111	19	short	short	JJ
cord-321150-ev6acl7b	111	20	segments	segment	NNS
cord-321150-ev6acl7b	111	21	as	as	IN
cord-321150-ev6acl7b	111	22	recombinant	recombinant	JJ
cord-321150-ev6acl7b	111	23	.	.	.
cord-321150-ev6acl7b	112	1	For	for	IN
cord-321150-ev6acl7b	112	2	this	this	DT
cord-321150-ev6acl7b	112	3	reason	reason	NN
cord-321150-ev6acl7b	112	4	,	,	,
cord-321150-ev6acl7b	112	5	an	an	DT
cord-321150-ev6acl7b	112	6	additional	additional	JJ
cord-321150-ev6acl7b	112	7	column	column	NN
cord-321150-ev6acl7b	112	8	is	be	VBZ
cord-321150-ev6acl7b	112	9	included	include	VBN
cord-321150-ev6acl7b	112	10	in	in	IN
cord-321150-ev6acl7b	112	11	table	table	NN
cord-321150-ev6acl7b	112	12	1	1	CD
cord-321150-ev6acl7b	112	13	showing	show	VBG
cord-321150-ev6acl7b	112	14	the	the	DT
cord-321150-ev6acl7b	112	15	number	number	NN
cord-321150-ev6acl7b	112	16	of	of	IN
cord-321150-ev6acl7b	112	17	sequences	sequence	NNS
cord-321150-ev6acl7b	112	18	that	that	WDT
cord-321150-ev6acl7b	112	19	were	be	VBD
cord-321150-ev6acl7b	112	20	identified	identify	VBN
cord-321150-ev6acl7b	112	21	as	as	IN
cord-321150-ev6acl7b	112	22	recombinant	recombinant	JJ
cord-321150-ev6acl7b	112	23	with	with	IN
cord-321150-ev6acl7b	112	24	both	both	DT
cord-321150-ev6acl7b	112	25	inherited	inherit	VBN
cord-321150-ev6acl7b	112	26	regions	region	NNS
cord-321150-ev6acl7b	112	27	being	be	VBG
cord-321150-ev6acl7b	112	28	longer	long	JJR
cord-321150-ev6acl7b	112	29	than	than	IN
cord-321150-ev6acl7b	112	30	500	500	CD
cord-321150-ev6acl7b	112	31	nt	nt	RB
cord-321150-ev6acl7b	112	32	;	;	:
cord-321150-ev6acl7b	112	33	if	if	IN
cord-321150-ev6acl7b	112	34	one	one	CD
cord-321150-ev6acl7b	112	35	of	of	IN
cord-321150-ev6acl7b	112	36	the	the	DT
cord-321150-ev6acl7b	112	37	recombinant	recombinant	JJ
cord-321150-ev6acl7b	112	38	regions	region	NNS
cord-321150-ev6acl7b	112	39	is	be	VBZ
cord-321150-ev6acl7b	112	40	very	very	RB
cord-321150-ev6acl7b	112	41	short	short	JJ
cord-321150-ev6acl7b	112	42	,	,	,
cord-321150-ev6acl7b	112	43	it	-PRON-	PRP
cord-321150-ev6acl7b	112	44	is	be	VBZ
cord-321150-ev6acl7b	112	45	difficult	difficult	JJ
cord-321150-ev6acl7b	112	46	to	to	TO
cord-321150-ev6acl7b	112	47	confirm	confirm	VB
cord-321150-ev6acl7b	112	48	the	the	DT
cord-321150-ev6acl7b	112	49	recombination	recombination	NN
cord-321150-ev6acl7b	112	50	results	result	NNS
cord-321150-ev6acl7b	112	51	with	with	IN
cord-321150-ev6acl7b	112	52	a	a	DT
cord-321150-ev6acl7b	112	53	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	112	54	analysis	analysis	NN
cord-321150-ev6acl7b	112	55	of	of	IN
cord-321150-ev6acl7b	112	56	the	the	DT
cord-321150-ev6acl7b	112	57	two	two	CD
cord-321150-ev6acl7b	112	58	identified	identify	VBN
cord-321150-ev6acl7b	112	59	parental	parental	JJ
cord-321150-ev6acl7b	112	60	segments	segment	NNS
cord-321150-ev6acl7b	112	61	.	.	.
cord-321150-ev6acl7b	113	1	Starting	start	VBG
cord-321150-ev6acl7b	113	2	with	with	IN
cord-321150-ev6acl7b	113	3	the	the	DT
cord-321150-ev6acl7b	113	4	analysis	analysis	NN
cord-321150-ev6acl7b	113	5	on	on	IN
cord-321150-ev6acl7b	113	6	the	the	DT
cord-321150-ev6acl7b	113	7	two	two	CD
cord-321150-ev6acl7b	113	8	negative	negative	JJ
cord-321150-ev6acl7b	113	9	control	control	NN
cord-321150-ev6acl7b	113	10	data	data	NN
cord-321150-ev6acl7b	113	11	sets	set	NNS
cord-321150-ev6acl7b	113	12	,	,	,
cord-321150-ev6acl7b	113	13	no	no	DT
cord-321150-ev6acl7b	113	14	recombinant	recombinant	JJ
cord-321150-ev6acl7b	113	15	segments	segment	NNS
cord-321150-ev6acl7b	113	16	longer	long	RBR
cord-321150-ev6acl7b	113	17	than	than	IN
cord-321150-ev6acl7b	113	18	500	500	CD
cord-321150-ev6acl7b	113	19	nt	nt	RB
cord-321150-ev6acl7b	113	20	were	be	VBD
cord-321150-ev6acl7b	113	21	detected	detect	VBN
cord-321150-ev6acl7b	113	22	in	in	IN
cord-321150-ev6acl7b	113	23	either	either	DT
cord-321150-ev6acl7b	113	24	avian	avian	JJ
cord-321150-ev6acl7b	113	25	influenza	influenza	NN
cord-321150-ev6acl7b	113	26	alignment	alignment	NN
cord-321150-ev6acl7b	113	27	.	.	.
cord-321150-ev6acl7b	114	1	Both	both	DT
cord-321150-ev6acl7b	114	2	of	of	IN
cord-321150-ev6acl7b	114	3	these	these	DT
cord-321150-ev6acl7b	114	4	runs	run	NNS
cord-321150-ev6acl7b	114	5	took	take	VBD
cord-321150-ev6acl7b	114	6	<	<	XX
cord-321150-ev6acl7b	114	7	30	30	CD
cord-321150-ev6acl7b	114	8	s.	s.	NNP
cord-321150-ev6acl7b	115	1	The	the	DT
cord-321150-ev6acl7b	115	2	genomic	genomic	JJ
cord-321150-ev6acl7b	115	3	alignments	alignment	NNS
cord-321150-ev6acl7b	115	4	of	of	IN
cord-321150-ev6acl7b	115	5	MERS	MERS	NNPS
cord-321150-ev6acl7b	115	6	and	and	CC
cord-321150-ev6acl7b	115	7	Zika	Zika	NNP
cord-321150-ev6acl7b	115	8	virus	virus	NN
cord-321150-ev6acl7b	115	9	contained	contain	VBD
cord-321150-ev6acl7b	115	10	1,150	1,150	CD
cord-321150-ev6acl7b	115	11	and	and	CC
cord-321150-ev6acl7b	115	12	2,792	2,792	CD
cord-321150-ev6acl7b	115	13	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	115	14	sites	site	NNS
cord-321150-ev6acl7b	115	15	,	,	,
cord-321150-ev6acl7b	115	16	respectively	respectively	RB
cord-321150-ev6acl7b	115	17	,	,	,
cord-321150-ev6acl7b	115	18	and	and	CC
cord-321150-ev6acl7b	115	19	>	>	XX
cord-321150-ev6acl7b	115	20	99.9	99.9	CD
cord-321150-ev6acl7b	115	21	%	%	NN
cord-321150-ev6acl7b	115	22	triplets	triplet	NNS
cord-321150-ev6acl7b	115	23	were	be	VBD
cord-321150-ev6acl7b	115	24	able	able	JJ
cord-321150-ev6acl7b	115	25	to	to	TO
cord-321150-ev6acl7b	115	26	be	be	VB
cord-321150-ev6acl7b	115	27	tested	test	VBN
cord-321150-ev6acl7b	115	28	for	for	IN
cord-321150-ev6acl7b	115	29	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	115	30	with	with	IN
cord-321150-ev6acl7b	115	31	exact	exact	JJ
cord-321150-ev6acl7b	115	32	P	p	NN
cord-321150-ev6acl7b	115	33	values	value	NNS
cord-321150-ev6acl7b	115	34	.	.	.
cord-321150-ev6acl7b	116	1	These	these	DT
cord-321150-ev6acl7b	116	2	runs	run	NNS
cord-321150-ev6acl7b	116	3	took	take	VBD
cord-321150-ev6acl7b	116	4	<	<	XX
cord-321150-ev6acl7b	116	5	2	2	CD
cord-321150-ev6acl7b	116	6	min	min	NN
cord-321150-ev6acl7b	116	7	.	.	.
cord-321150-ev6acl7b	117	1	As	as	IN
cord-321150-ev6acl7b	117	2	expected	expect	VBN
cord-321150-ev6acl7b	117	3	from	from	IN
cord-321150-ev6acl7b	117	4	a	a	DT
cord-321150-ev6acl7b	117	5	recent	recent	JJ
cord-321150-ev6acl7b	117	6	analysis	analysis	NN
cord-321150-ev6acl7b	117	7	by	by	IN
cord-321150-ev6acl7b	117	8	Dudas	Dudas	NNP
cord-321150-ev6acl7b	117	9	and	and	CC
cord-321150-ev6acl7b	117	10	Rambaut	Rambaut	NNP
cord-321150-ev6acl7b	117	11	(	(	-LRB-
cord-321150-ev6acl7b	117	12	Dudas	Dudas	NNP
cord-321150-ev6acl7b	117	13	and	and	CC
cord-321150-ev6acl7b	117	14	Rambaut	Rambaut	NNP
cord-321150-ev6acl7b	117	15	2015	2015	CD
cord-321150-ev6acl7b	117	16	)	)	-RRB-
cord-321150-ev6acl7b	117	17	,	,	,
cord-321150-ev6acl7b	117	18	the	the	DT
cord-321150-ev6acl7b	117	19	MERS	MERS	NNP
cord-321150-ev6acl7b	117	20	sequence	sequence	NN
cord-321150-ev6acl7b	117	21	data	datum	NNS
cord-321150-ev6acl7b	117	22	set	set	NN
cord-321150-ev6acl7b	117	23	was	be	VBD
cord-321150-ev6acl7b	117	24	highly	highly	RB
cord-321150-ev6acl7b	117	25	recombinant	recombinant	JJ
cord-321150-ev6acl7b	117	26	,	,	,
cord-321150-ev6acl7b	117	27	with	with	IN
cord-321150-ev6acl7b	117	28	100	100	CD
cord-321150-ev6acl7b	117	29	out	out	IN
cord-321150-ev6acl7b	117	30	of	of	IN
cord-321150-ev6acl7b	117	31	164	164	CD
cord-321150-ev6acl7b	117	32	sequences	sequence	NNS
cord-321150-ev6acl7b	117	33	being	be	VBG
cord-321150-ev6acl7b	117	34	identified	identify	VBN
cord-321150-ev6acl7b	117	35	as	as	IN
cord-321150-ev6acl7b	117	36	such	such	JJ
cord-321150-ev6acl7b	117	37	.	.	.
cord-321150-ev6acl7b	118	1	For	for	IN
cord-321150-ev6acl7b	118	2	Zika	Zika	NNP
cord-321150-ev6acl7b	118	3	,	,	,
cord-321150-ev6acl7b	118	4	6	6	CD
cord-321150-ev6acl7b	118	5	out	out	IN
cord-321150-ev6acl7b	118	6	of	of	IN
cord-321150-ev6acl7b	118	7	157	157	CD
cord-321150-ev6acl7b	118	8	virus	virus	NN
cord-321150-ev6acl7b	118	9	sequences	sequence	NNS
cord-321150-ev6acl7b	118	10	were	be	VBD
cord-321150-ev6acl7b	118	11	identified	identify	VBN
cord-321150-ev6acl7b	118	12	as	as	IN
cord-321150-ev6acl7b	118	13	recombinant	recombinant	JJ
cord-321150-ev6acl7b	118	14	,	,	,
cord-321150-ev6acl7b	118	15	consistent	consistent	JJ
cord-321150-ev6acl7b	118	16	with	with	IN
cord-321150-ev6acl7b	118	17	earlier	early	JJR
cord-321150-ev6acl7b	118	18	analyses	analysis	NNS
cord-321150-ev6acl7b	118	19	supporting	support	VBG
cord-321150-ev6acl7b	118	20	the	the	DT
cord-321150-ev6acl7b	118	21	presence	presence	NN
cord-321150-ev6acl7b	118	22	of	of	IN
cord-321150-ev6acl7b	118	23	recombination	recombination	NN
cord-321150-ev6acl7b	118	24	in	in	IN
cord-321150-ev6acl7b	118	25	the	the	DT
cord-321150-ev6acl7b	118	26	evolutionary	evolutionary	JJ
cord-321150-ev6acl7b	118	27	history	history	NN
cord-321150-ev6acl7b	118	28	of	of	IN
cord-321150-ev6acl7b	118	29	Zika	Zika	NNP
cord-321150-ev6acl7b	119	1	(	(	-LRB-
cord-321150-ev6acl7b	119	2	Faye	Faye	NNP
cord-321150-ev6acl7b	119	3	et	et	FW
cord-321150-ev6acl7b	119	4	al	al	NNP
cord-321150-ev6acl7b	119	5	.	.	.
cord-321150-ev6acl7b	120	1	2014	2014	CD
cord-321150-ev6acl7b	120	2	;	;	:
cord-321150-ev6acl7b	120	3	Zhu	Zhu	NNP
cord-321150-ev6acl7b	120	4	et	et	FW
cord-321150-ev6acl7b	120	5	al	al	NNP
cord-321150-ev6acl7b	120	6	.	.	.
cord-321150-ev6acl7b	120	7	2016	2016	CD
cord-321150-ev6acl7b	120	8	)	)	-RRB-
cord-321150-ev6acl7b	120	9	;	;	:
cord-321150-ev6acl7b	121	1	details	detail	NNS
cord-321150-ev6acl7b	121	2	of	of	IN
cord-321150-ev6acl7b	121	3	the	the	DT
cord-321150-ev6acl7b	121	4	recombinants	recombinant	NNS
cord-321150-ev6acl7b	121	5	,	,	,
cord-321150-ev6acl7b	121	6	parents	parent	NNS
cord-321150-ev6acl7b	121	7	,	,	,
cord-321150-ev6acl7b	121	8	and	and	CC
cord-321150-ev6acl7b	121	9	breakpoints	breakpoint	NNS
cord-321150-ev6acl7b	121	10	are	be	VBP
cord-321150-ev6acl7b	121	11	included	include	VBN
cord-321150-ev6acl7b	121	12	in	in	IN
cord-321150-ev6acl7b	121	13	the	the	DT
cord-321150-ev6acl7b	121	14	Supplementary	Supplementary	NNP
cord-321150-ev6acl7b	121	15	Material	Material	NNP
cord-321150-ev6acl7b	121	16	online	online	RB
cord-321150-ev6acl7b	121	17	.	.	.
cord-321150-ev6acl7b	122	1	The	the	DT
cord-321150-ev6acl7b	122	2	Ebola	Ebola	NNP
cord-321150-ev6acl7b	122	3	virus	virus	NN
cord-321150-ev6acl7b	122	4	and	and	CC
cord-321150-ev6acl7b	122	5	dengue	dengue	NN
cord-321150-ev6acl7b	122	6	virus	virus	NN
cord-321150-ev6acl7b	122	7	alignments	alignment	NNS
cord-321150-ev6acl7b	122	8	each	each	DT
cord-321150-ev6acl7b	122	9	contained	contain	VBD
cord-321150-ev6acl7b	122	10	around	around	RB
cord-321150-ev6acl7b	122	11	1,000	1,000	CD
cord-321150-ev6acl7b	122	12	sequences	sequence	NNS
cord-321150-ev6acl7b	122	13	.	.	.
cord-321150-ev6acl7b	123	1	The	the	DT
cord-321150-ev6acl7b	123	2	Ebola	Ebola	NNP
cord-321150-ev6acl7b	123	3	virus	virus	NN
cord-321150-ev6acl7b	123	4	data	datum	NNS
cord-321150-ev6acl7b	123	5	showed	show	VBD
cord-321150-ev6acl7b	123	6	no	no	DT
cord-321150-ev6acl7b	123	7	evidence	evidence	NN
cord-321150-ev6acl7b	123	8	of	of	IN
cord-321150-ev6acl7b	123	9	recombination	recombination	NN
cord-321150-ev6acl7b	123	10	.	.	.
cord-321150-ev6acl7b	124	1	The	the	DT
cord-321150-ev6acl7b	124	2	dengue	dengue	NN
cord-321150-ev6acl7b	124	3	alignment	alignment	NN
cord-321150-ev6acl7b	124	4	was	be	VBD
cord-321150-ev6acl7b	124	5	the	the	DT
cord-321150-ev6acl7b	124	6	most	most	RBS
cord-321150-ev6acl7b	124	7	diverse	diverse	JJ
cord-321150-ev6acl7b	124	8	of	of	IN
cord-321150-ev6acl7b	124	9	all	all	PDT
cord-321150-ev6acl7b	124	10	the	the	DT
cord-321150-ev6acl7b	124	11	tested	test	VBN
cord-321150-ev6acl7b	124	12	data	data	NN
cord-321150-ev6acl7b	124	13	sets	set	NNS
cord-321150-ev6acl7b	124	14	with	with	IN
cord-321150-ev6acl7b	124	15	6,151	6,151	CD
cord-321150-ev6acl7b	124	16	polymorphic	polymorphic	JJ
cord-321150-ev6acl7b	124	17	sites	site	NNS
cord-321150-ev6acl7b	124	18	;	;	:
cord-321150-ev6acl7b	124	19	99.4	99.4	CD
cord-321150-ev6acl7b	124	20	%	%	NN
cord-321150-ev6acl7b	124	21	of	of	IN
cord-321150-ev6acl7b	124	22	the	the	DT
cord-321150-ev6acl7b	124	23	triplets	triplet	NNS
cord-321150-ev6acl7b	124	24	in	in	IN
cord-321150-ev6acl7b	124	25	this	this	DT
cord-321150-ev6acl7b	124	26	data	data	NN
cord-321150-ev6acl7b	124	27	set	set	VBN
cord-321150-ev6acl7b	124	28	were	be	VBD
cord-321150-ev6acl7b	124	29	able	able	JJ
cord-321150-ev6acl7b	124	30	to	to	TO
cord-321150-ev6acl7b	124	31	be	be	VB
cord-321150-ev6acl7b	124	32	evaluated	evaluate	VBN
cord-321150-ev6acl7b	124	33	with	with	IN
cord-321150-ev6acl7b	124	34	exact	exact	JJ
cord-321150-ev6acl7b	124	35	P	p	NN
cord-321150-ev6acl7b	124	36	values	value	NNS
cord-321150-ev6acl7b	124	37	.	.	.
cord-321150-ev6acl7b	125	1	A	a	DT
cord-321150-ev6acl7b	125	2	total	total	NN
cord-321150-ev6acl7b	125	3	of	of	IN
cord-321150-ev6acl7b	125	4	36	36	CD
cord-321150-ev6acl7b	125	5	out	out	IN
cord-321150-ev6acl7b	125	6	of	of	IN
cord-321150-ev6acl7b	125	7	1,108	1,108	CD
cord-321150-ev6acl7b	125	8	dengue	dengue	NN
cord-321150-ev6acl7b	125	9	sequences	sequence	NNS
cord-321150-ev6acl7b	125	10	were	be	VBD
cord-321150-ev6acl7b	125	11	identified	identify	VBN
cord-321150-ev6acl7b	125	12	as	as	IN
cord-321150-ev6acl7b	125	13	recombinant	recombinant	JJ
cord-321150-ev6acl7b	125	14	(	(	-LRB-
cord-321150-ev6acl7b	125	15	see	see	VB
cord-321150-ev6acl7b	125	16	Supplementary	Supplementary	NNP
cord-321150-ev6acl7b	125	17	Material	Material	NNP
cord-321150-ev6acl7b	125	18	online	online	RB
cord-321150-ev6acl7b	125	19	)	)	-RRB-
cord-321150-ev6acl7b	125	20	.	.	.
cord-321150-ev6acl7b	126	1	Several	several	JJ
cord-321150-ev6acl7b	126	2	previous	previous	JJ
cord-321150-ev6acl7b	126	3	analyses	analysis	NNS
cord-321150-ev6acl7b	126	4	of	of	IN
cord-321150-ev6acl7b	126	5	dengue	dengue	NN
cord-321150-ev6acl7b	126	6	virus	virus	NN
cord-321150-ev6acl7b	126	7	have	have	VBP
cord-321150-ev6acl7b	126	8	shown	show	VBN
cord-321150-ev6acl7b	126	9	evidence	evidence	NN
cord-321150-ev6acl7b	126	10	for	for	IN
cord-321150-ev6acl7b	126	11	intraserotype	intraserotype	NN
cord-321150-ev6acl7b	126	12	recombination	recombination	NN
cord-321150-ev6acl7b	126	13	in	in	IN
cord-321150-ev6acl7b	126	14	dengue	dengue	NN
cord-321150-ev6acl7b	126	15	Worobey	Worobey	NNP
cord-321150-ev6acl7b	126	16	et	et	NNP
cord-321150-ev6acl7b	126	17	al	al	NNP
cord-321150-ev6acl7b	126	18	.	.	.
cord-321150-ev6acl7b	127	1	1999	1999	CD
cord-321150-ev6acl7b	127	2	;	;	:
cord-321150-ev6acl7b	127	3	Uzcategui	Uzcategui	NNP
cord-321150-ev6acl7b	127	4	et	et	NNP
cord-321150-ev6acl7b	127	5	al	al	NNP
cord-321150-ev6acl7b	127	6	.	.	.
cord-321150-ev6acl7b	128	1	2001	2001	CD
cord-321150-ev6acl7b	128	2	;	;	:
cord-321150-ev6acl7b	128	3	Aaskov	Aaskov	NNP
cord-321150-ev6acl7b	128	4	et	et	NNP
cord-321150-ev6acl7b	128	5	al	al	NNP
cord-321150-ev6acl7b	128	6	.	.	.
cord-321150-ev6acl7b	129	1	2007	2007	CD
cord-321150-ev6acl7b	129	2	;	;	:
cord-321150-ev6acl7b	129	3	Waman	Waman	NNP
cord-321150-ev6acl7b	129	4	et	et	NNP
cord-321150-ev6acl7b	129	5	al	al	NNP
cord-321150-ev6acl7b	129	6	.	.	.
cord-321150-ev6acl7b	130	1	2016	2016	CD
cord-321150-ev6acl7b	131	1	Waman	Waman	NNP
cord-321150-ev6acl7b	131	2	et	et	NNP
cord-321150-ev6acl7b	131	3	al	al	NNP
cord-321150-ev6acl7b	131	4	.	.	NNP
cord-321150-ev6acl7b	131	5	,	,	,
cord-321150-ev6acl7b	131	6	2017	2017	CD
cord-321150-ev6acl7b	131	7	.	.	.
cord-321150-ev6acl7b	132	1	The	the	DT
cord-321150-ev6acl7b	132	2	results	result	NNS
cord-321150-ev6acl7b	132	3	presented	present	VBN
cord-321150-ev6acl7b	132	4	here	here	RB
cord-321150-ev6acl7b	132	5	,	,	,
cord-321150-ev6acl7b	132	6	as	as	RB
cord-321150-ev6acl7b	132	7	well	well	RB
cord-321150-ev6acl7b	132	8	as	as	IN
cord-321150-ev6acl7b	132	9	those	those	DT
cord-321150-ev6acl7b	132	10	of	of	IN
cord-321150-ev6acl7b	132	11	Waman	Waman	NNP
cord-321150-ev6acl7b	132	12	et	et	NNP
cord-321150-ev6acl7b	132	13	al	al	NNP
cord-321150-ev6acl7b	132	14	.	.	.
cord-321150-ev6acl7b	133	1	(	(	-LRB-
cord-321150-ev6acl7b	133	2	2017	2017	CD
cord-321150-ev6acl7b	133	3	)	)	-RRB-
cord-321150-ev6acl7b	133	4	,	,	,
cord-321150-ev6acl7b	133	5	suggest	suggest	VBP
cord-321150-ev6acl7b	133	6	that	that	IN
cord-321150-ev6acl7b	133	7	recombination	recombination	NN
cord-321150-ev6acl7b	133	8	in	in	IN
cord-321150-ev6acl7b	133	9	dengue	dengue	NN
cord-321150-ev6acl7b	133	10	is	be	VBZ
cord-321150-ev6acl7b	133	11	infrequent	infrequent	JJ
cord-321150-ev6acl7b	133	12	.	.	.
cord-321150-ev6acl7b	134	1	In	in	IN
cord-321150-ev6acl7b	134	2	general	general	JJ
cord-321150-ev6acl7b	134	3	,	,	,
cord-321150-ev6acl7b	134	4	when	when	WRB
cord-321150-ev6acl7b	134	5	recombinants	recombinant	NNS
cord-321150-ev6acl7b	134	6	are	be	VBP
cord-321150-ev6acl7b	134	7	identified	identify	VBN
cord-321150-ev6acl7b	134	8	by	by	IN
cord-321150-ev6acl7b	134	9	a	a	DT
cord-321150-ev6acl7b	134	10	mosaicism	mosaicism	NN
cord-321150-ev6acl7b	134	11	statistic	statistic	NN
cord-321150-ev6acl7b	134	12	like	like	IN
cord-321150-ev6acl7b	134	13	the	the	DT
cord-321150-ev6acl7b	134	14	one	one	NN
cord-321150-ev6acl7b	134	15	used	use	VBN
cord-321150-ev6acl7b	134	16	by	by	IN
cord-321150-ev6acl7b	134	17	3SEQ	3SEQ	NNP
cord-321150-ev6acl7b	134	18	,	,	,
cord-321150-ev6acl7b	134	19	a	a	DT
cord-321150-ev6acl7b	134	20	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	134	21	analysis	analysis	NN
cord-321150-ev6acl7b	134	22	should	should	MD
cord-321150-ev6acl7b	134	23	be	be	VB
cord-321150-ev6acl7b	134	24	performed	perform	VBN
cord-321150-ev6acl7b	134	25	to	to	TO
cord-321150-ev6acl7b	134	26	ensure	ensure	VB
cord-321150-ev6acl7b	134	27	that	that	IN
cord-321150-ev6acl7b	134	28	the	the	DT
cord-321150-ev6acl7b	134	29	recombination	recombination	NN
cord-321150-ev6acl7b	134	30	signal	signal	NN
cord-321150-ev6acl7b	134	31	is	be	VBZ
cord-321150-ev6acl7b	134	32	preserved	preserve	VBN
cord-321150-ev6acl7b	134	33	when	when	WRB
cord-321150-ev6acl7b	134	34	the	the	DT
cord-321150-ev6acl7b	134	35	entire	entire	JJ
cord-321150-ev6acl7b	134	36	evolutionary	evolutionary	JJ
cord-321150-ev6acl7b	134	37	history	history	NN
cord-321150-ev6acl7b	134	38	of	of	IN
cord-321150-ev6acl7b	134	39	the	the	DT
cord-321150-ev6acl7b	134	40	sample	sample	NN
cord-321150-ev6acl7b	134	41	is	be	VBZ
cord-321150-ev6acl7b	134	42	taken	take	VBN
cord-321150-ev6acl7b	134	43	into	into	IN
cord-321150-ev6acl7b	134	44	account	account	NN
cord-321150-ev6acl7b	134	45	.	.	.
cord-321150-ev6acl7b	135	1	The	the	DT
cord-321150-ev6acl7b	135	2	size	size	NN
cord-321150-ev6acl7b	135	3	of	of	IN
cord-321150-ev6acl7b	135	4	modern	modern	JJ
cord-321150-ev6acl7b	135	5	data	datum	NNS
cord-321150-ev6acl7b	135	6	sets	set	NNS
cord-321150-ev6acl7b	135	7	presents	present	VBZ
cord-321150-ev6acl7b	135	8	two	two	CD
cord-321150-ev6acl7b	135	9	challenges	challenge	NNS
cord-321150-ev6acl7b	135	10	here	here	RB
cord-321150-ev6acl7b	135	11	.	.	.
cord-321150-ev6acl7b	136	1	First	first	RB
cord-321150-ev6acl7b	136	2	,	,	,
cord-321150-ev6acl7b	136	3	as	as	IN
cord-321150-ev6acl7b	136	4	the	the	DT
cord-321150-ev6acl7b	136	5	number	number	NN
cord-321150-ev6acl7b	136	6	of	of	IN
cord-321150-ev6acl7b	136	7	available	available	JJ
cord-321150-ev6acl7b	136	8	sequences	sequence	NNS
cord-321150-ev6acl7b	136	9	increases	increase	VBZ
cord-321150-ev6acl7b	136	10	,	,	,
cord-321150-ev6acl7b	136	11	the	the	DT
cord-321150-ev6acl7b	136	12	choice	choice	NN
cord-321150-ev6acl7b	136	13	for	for	IN
cord-321150-ev6acl7b	136	14	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	136	15	inference	inference	NN
cord-321150-ev6acl7b	136	16	tools	tool	NNS
cord-321150-ev6acl7b	136	17	drifts	drift	VBZ
cord-321150-ev6acl7b	136	18	to	to	IN
cord-321150-ev6acl7b	136	19	more	more	JJR
cord-321150-ev6acl7b	136	20	approximate	approximate	JJ
cord-321150-ev6acl7b	136	21	methods	method	NNS
cord-321150-ev6acl7b	136	22	,	,	,
cord-321150-ev6acl7b	136	23	as	as	IN
cord-321150-ev6acl7b	136	24	thorough	thorough	JJ
cord-321150-ev6acl7b	136	25	explorations	exploration	NNS
cord-321150-ev6acl7b	136	26	of	of	IN
cord-321150-ev6acl7b	136	27	tree	tree	NN
cord-321150-ev6acl7b	136	28	space	space	NN
cord-321150-ev6acl7b	136	29	become	become	VBP
cord-321150-ev6acl7b	136	30	computationally	computationally	RB
cord-321150-ev6acl7b	136	31	expensive	expensive	JJ
cord-321150-ev6acl7b	136	32	for	for	IN
cord-321150-ev6acl7b	136	33	large	large	JJ
cord-321150-ev6acl7b	136	34	numbers	number	NNS
cord-321150-ev6acl7b	136	35	of	of	IN
cord-321150-ev6acl7b	136	36	sequences	sequence	NNS
cord-321150-ev6acl7b	136	37	.	.	.
cord-321150-ev6acl7b	137	1	This	this	DT
cord-321150-ev6acl7b	137	2	reduces	reduce	VBZ
cord-321150-ev6acl7b	137	3	our	-PRON-	PRP$
cord-321150-ev6acl7b	137	4	confidence	confidence	NN
cord-321150-ev6acl7b	137	5	in	in	IN
cord-321150-ev6acl7b	137	6	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	137	7	incongruence	incongruence	NN
cord-321150-ev6acl7b	137	8	signals	signal	NNS
cord-321150-ev6acl7b	137	9	that	that	IN
cord-321150-ev6acl7b	137	10	we	-PRON-	PRP
cord-321150-ev6acl7b	137	11	observe	observe	VBP
cord-321150-ev6acl7b	137	12	in	in	IN
cord-321150-ev6acl7b	137	13	these	these	DT
cord-321150-ev6acl7b	137	14	data	datum	NNS
cord-321150-ev6acl7b	137	15	.	.	.
cord-321150-ev6acl7b	138	1	Second	second	RB
cord-321150-ev6acl7b	138	2	,	,	,
cord-321150-ev6acl7b	138	3	genome	genome	NN
cord-321150-ev6acl7b	138	4	-	-	HYPH
cord-321150-ev6acl7b	138	5	level	level	NN
cord-321150-ev6acl7b	138	6	analyses	analysis	NNS
cord-321150-ev6acl7b	138	7	in	in	IN
cord-321150-ev6acl7b	138	8	highly	highly	RB
cord-321150-ev6acl7b	138	9	recombining	recombine	VBG
cord-321150-ev6acl7b	138	10	organisms	organism	NNS
cord-321150-ev6acl7b	138	11	are	be	VBP
cord-321150-ev6acl7b	138	12	likely	likely	JJ
cord-321150-ev6acl7b	138	13	to	to	TO
cord-321150-ev6acl7b	138	14	result	result	VB
cord-321150-ev6acl7b	138	15	in	in	IN
cord-321150-ev6acl7b	138	16	a	a	DT
cord-321150-ev6acl7b	138	17	subdivision	subdivision	NN
cord-321150-ev6acl7b	138	18	of	of	IN
cord-321150-ev6acl7b	138	19	the	the	DT
cord-321150-ev6acl7b	138	20	genome	genome	NN
cord-321150-ev6acl7b	138	21	into	into	IN
cord-321150-ev6acl7b	138	22	many	many	JJ
cord-321150-ev6acl7b	138	23	nonrecombinant	nonrecombinant	NN
cord-321150-ev6acl7b	138	24	blocks	block	NNS
cord-321150-ev6acl7b	138	25	.	.	.
cord-321150-ev6acl7b	139	1	Inferring	infer	VBG
cord-321150-ev6acl7b	139	2	phylogenies	phylogeny	NNS
cord-321150-ev6acl7b	139	3	for	for	IN
cord-321150-ev6acl7b	139	4	all	all	DT
cord-321150-ev6acl7b	139	5	blocks	block	NNS
cord-321150-ev6acl7b	139	6	individually	individually	RB
cord-321150-ev6acl7b	139	7	will	will	MD
cord-321150-ev6acl7b	139	8	be	be	VB
cord-321150-ev6acl7b	139	9	computationally	computationally	RB
cord-321150-ev6acl7b	139	10	expensive	expensive	JJ
cord-321150-ev6acl7b	139	11	,	,	,
cord-321150-ev6acl7b	139	12	as	as	IN
cord-321150-ev6acl7b	139	13	will	will	MD
cord-321150-ev6acl7b	139	14	the	the	DT
cord-321150-ev6acl7b	139	15	subsequent	subsequent	JJ
cord-321150-ev6acl7b	139	16	analysis	analysis	NN
cord-321150-ev6acl7b	139	17	of	of	IN
cord-321150-ev6acl7b	139	18	identifying	identify	VBG
cord-321150-ev6acl7b	139	19	specific	specific	JJ
cord-321150-ev6acl7b	139	20	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	139	21	incongruences	incongruence	NNS
cord-321150-ev6acl7b	139	22	among	among	IN
cord-321150-ev6acl7b	139	23	the	the	DT
cord-321150-ev6acl7b	139	24	trees	tree	NNS
cord-321150-ev6acl7b	139	25	.	.	.
cord-321150-ev6acl7b	140	1	The	the	DT
cord-321150-ev6acl7b	140	2	next	next	JJ
cord-321150-ev6acl7b	140	3	generation	generation	NN
cord-321150-ev6acl7b	140	4	of	of	IN
cord-321150-ev6acl7b	140	5	recombination	recombination	NN
cord-321150-ev6acl7b	140	6	detection	detection	NN
cord-321150-ev6acl7b	140	7	methods	method	NNS
cord-321150-ev6acl7b	140	8	should	should	MD
cord-321150-ev6acl7b	140	9	focus	focus	VB
cord-321150-ev6acl7b	140	10	on	on	IN
cord-321150-ev6acl7b	140	11	these	these	DT
cord-321150-ev6acl7b	140	12	computational	computational	JJ
cord-321150-ev6acl7b	140	13	challenges	challenge	NNS
cord-321150-ev6acl7b	140	14	.	.	.
cord-321150-ev6acl7b	141	1	Supplementary	supplementary	JJ
cord-321150-ev6acl7b	141	2	data	datum	NNS
cord-321150-ev6acl7b	141	3	are	be	VBP
cord-321150-ev6acl7b	141	4	available	available	JJ
cord-321150-ev6acl7b	141	5	at	at	IN
cord-321150-ev6acl7b	141	6	Molecular	Molecular	NNP
cord-321150-ev6acl7b	141	7	Biology	Biology	NNP
cord-321150-ev6acl7b	141	8	and	and	CC
cord-321150-ev6acl7b	141	9	Evolution	Evolution	NNP
cord-321150-ev6acl7b	141	10	online	online	RB
cord-321150-ev6acl7b	141	11	.	.	.
cord-321150-ev6acl7b	141	12	 	 	_SP
cord-321150-ev6acl7b	142	1	Multiple	multiple	JJ
cord-321150-ev6acl7b	142	2	recombinant	recombinant	JJ
cord-321150-ev6acl7b	142	3	dengue	dengue	NN
cord-321150-ev6acl7b	142	4	type	type	NN
cord-321150-ev6acl7b	142	5	1	1	CD
cord-321150-ev6acl7b	142	6	viruses	virus	NNS
cord-321150-ev6acl7b	142	7	in	in	IN
cord-321150-ev6acl7b	142	8	an	an	DT
cord-321150-ev6acl7b	142	9	isolate	isolate	NN
cord-321150-ev6acl7b	142	10	from	from	IN
cord-321150-ev6acl7b	142	11	a	a	DT
cord-321150-ev6acl7b	142	12	dengue	dengue	NN
cord-321150-ev6acl7b	142	13	patient	patient	NN
cord-321150-ev6acl7b	142	14	Guidelines	guideline	NNS
cord-321150-ev6acl7b	142	15	for	for	IN
cord-321150-ev6acl7b	142	16	identifying	identify	VBG
cord-321150-ev6acl7b	142	17	homologous	homologous	JJ
cord-321150-ev6acl7b	142	18	recombination	recombination	NN
cord-321150-ev6acl7b	142	19	events	event	NNS
cord-321150-ev6acl7b	142	20	in	in	IN
cord-321150-ev6acl7b	142	21	influenza	influenza	NN
cord-321150-ev6acl7b	142	22	A	a	DT
cord-321150-ev6acl7b	142	23	virus	virus	NN
cord-321150-ev6acl7b	143	1	An	an	DT
cord-321150-ev6acl7b	143	2	exact	exact	JJ
cord-321150-ev6acl7b	143	3	nonparametric	nonparametric	JJ
cord-321150-ev6acl7b	143	4	method	method	NN
cord-321150-ev6acl7b	143	5	for	for	IN
cord-321150-ev6acl7b	143	6	inferring	infer	VBG
cord-321150-ev6acl7b	143	7	mosaic	mosaic	JJ
cord-321150-ev6acl7b	143	8	structure	structure	NN
cord-321150-ev6acl7b	143	9	in	in	IN
cord-321150-ev6acl7b	144	1	sequence	sequence	NN
cord-321150-ev6acl7b	144	2	triplets	triplet	NNS
cord-321150-ev6acl7b	145	1	Virus	virus	NN
cord-321150-ev6acl7b	145	2	variation	variation	NN
cord-321150-ev6acl7b	145	3	resource	resource	NN
cord-321150-ev6acl7b	145	4	-recent	-recent	NN
cord-321150-ev6acl7b	145	5	updates	update	NNS
cord-321150-ev6acl7b	145	6	and	and	CC
cord-321150-ev6acl7b	145	7	future	future	JJ
cord-321150-ev6acl7b	145	8	directions	direction	NNS
cord-321150-ev6acl7b	145	9	MERS	MERS	NNP
cord-321150-ev6acl7b	145	10	-	-	HYPH
cord-321150-ev6acl7b	145	11	CoV	cov	NN
cord-321150-ev6acl7b	145	12	recombination	recombination	NN
cord-321150-ev6acl7b	145	13	:	:	:
cord-321150-ev6acl7b	145	14	implications	implication	NNS
cord-321150-ev6acl7b	145	15	about	about	IN
cord-321150-ev6acl7b	145	16	the	the	DT
cord-321150-ev6acl7b	145	17	reservoir	reservoir	NN
cord-321150-ev6acl7b	145	18	and	and	CC
cord-321150-ev6acl7b	145	19	potential	potential	NN
cord-321150-ev6acl7b	145	20	for	for	IN
cord-321150-ev6acl7b	145	21	adaptation	adaptation	NN
cord-321150-ev6acl7b	145	22	MUSCLE	muscle	NN
cord-321150-ev6acl7b	145	23	:	:	:
cord-321150-ev6acl7b	146	1	multiple	multiple	JJ
cord-321150-ev6acl7b	146	2	sequence	sequence	NN
cord-321150-ev6acl7b	146	3	alignment	alignment	NN
cord-321150-ev6acl7b	146	4	with	with	IN
cord-321150-ev6acl7b	146	5	high	high	JJ
cord-321150-ev6acl7b	146	6	accuracy	accuracy	NN
cord-321150-ev6acl7b	146	7	and	and	CC
cord-321150-ev6acl7b	146	8	high	high	JJ
cord-321150-ev6acl7b	146	9	throughput	throughput	NN
cord-321150-ev6acl7b	146	10	Molecular	molecular	JJ
cord-321150-ev6acl7b	146	11	evolution	evolution	NN
cord-321150-ev6acl7b	146	12	of	of	IN
cord-321150-ev6acl7b	146	13	Zika	Zika	NNP
cord-321150-ev6acl7b	146	14	virus	virus	NN
cord-321150-ev6acl7b	146	15	during	during	IN
cord-321150-ev6acl7b	146	16	its	-PRON-	PRP$
cord-321150-ev6acl7b	146	17	emergence	emergence	NN
cord-321150-ev6acl7b	146	18	in	in	IN
cord-321150-ev6acl7b	146	19	the	the	DT
cord-321150-ev6acl7b	146	20	20th	20th	JJ
cord-321150-ev6acl7b	146	21	century	century	NN
cord-321150-ev6acl7b	146	22	Large	large	JJ
cord-321150-ev6acl7b	146	23	-	-	HYPH
cord-321150-ev6acl7b	146	24	scale	scale	NN
cord-321150-ev6acl7b	146	25	sequencing	sequencing	NN
cord-321150-ev6acl7b	146	26	of	of	IN
cord-321150-ev6acl7b	146	27	human	human	JJ
cord-321150-ev6acl7b	146	28	influenza	influenza	NN
cord-321150-ev6acl7b	146	29	reveals	reveal	VBZ
cord-321150-ev6acl7b	146	30	the	the	DT
cord-321150-ev6acl7b	146	31	dynamic	dynamic	JJ
cord-321150-ev6acl7b	146	32	nature	nature	NN
cord-321150-ev6acl7b	146	33	of	of	IN
cord-321150-ev6acl7b	146	34	viral	viral	JJ
cord-321150-ev6acl7b	146	35	genome	genome	NN
cord-321150-ev6acl7b	146	36	evolution	evolution	NN
cord-321150-ev6acl7b	146	37	Dengue	dengue	NN
cord-321150-ev6acl7b	146	38	and	and	CC
cord-321150-ev6acl7b	146	39	dengue	dengue	NN
cord-321150-ev6acl7b	146	40	hemorrhagic	hemorrhagic	JJ
cord-321150-ev6acl7b	146	41	fever	fever	NN
cord-321150-ev6acl7b	147	1	No	no	DT
cord-321150-ev6acl7b	147	2	observed	observed	JJ
cord-321150-ev6acl7b	147	3	effect	effect	NN
cord-321150-ev6acl7b	147	4	of	of	IN
cord-321150-ev6acl7b	147	5	homologous	homologous	JJ
cord-321150-ev6acl7b	147	6	recombination	recombination	NN
cord-321150-ev6acl7b	147	7	on	on	IN
cord-321150-ev6acl7b	147	8	influenza	influenza	NN
cord-321150-ev6acl7b	147	9	C	C	NNP
cord-321150-ev6acl7b	147	10	virus	virus	NN
cord-321150-ev6acl7b	147	11	evolution	evolution	NN
cord-321150-ev6acl7b	147	12	Large	large	JJ
cord-321150-ev6acl7b	147	13	deviations	deviation	NNS
cord-321150-ev6acl7b	147	14	for	for	IN
cord-321150-ev6acl7b	147	15	the	the	DT
cord-321150-ev6acl7b	147	16	maxima	maxima	NN
cord-321150-ev6acl7b	147	17	of	of	IN
cord-321150-ev6acl7b	147	18	some	some	DT
cord-321150-ev6acl7b	147	19	random	random	JJ
cord-321150-ev6acl7b	147	20	fields	field	NNS
cord-321150-ev6acl7b	148	1	Phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	148	2	evidence	evidence	NN
cord-321150-ev6acl7b	148	3	for	for	IN
cord-321150-ev6acl7b	148	4	recombination	recombination	NN
cord-321150-ev6acl7b	148	5	in	in	IN
cord-321150-ev6acl7b	148	6	dengue	dengue	NN
cord-321150-ev6acl7b	148	7	virus	virus	NN
cord-321150-ev6acl7b	148	8	Analysing	analyse	VBG
cord-321150-ev6acl7b	148	9	recombination	recombination	NN
cord-321150-ev6acl7b	148	10	in	in	IN
cord-321150-ev6acl7b	148	11	nucleotide	nucleotide	JJ
cord-321150-ev6acl7b	148	12	sequences	sequence	NNS
cord-321150-ev6acl7b	148	13	Evaluation	Evaluation	NNP
cord-321150-ev6acl7b	148	14	of	of	IN
cord-321150-ev6acl7b	148	15	methods	method	NNS
cord-321150-ev6acl7b	148	16	for	for	IN
cord-321150-ev6acl7b	148	17	detecting	detect	VBG
cord-321150-ev6acl7b	148	18	recombination	recombination	NN
cord-321150-ev6acl7b	148	19	from	from	IN
cord-321150-ev6acl7b	148	20	DNA	dna	NN
cord-321150-ev6acl7b	148	21	sequences	sequence	NNS
cord-321150-ev6acl7b	148	22	:	:	:
cord-321150-ev6acl7b	148	23	computer	computer	NN
cord-321150-ev6acl7b	148	24	simulations	simulation	NNS
cord-321150-ev6acl7b	149	1	The	the	DT
cord-321150-ev6acl7b	149	2	effect	effect	NN
cord-321150-ev6acl7b	149	3	of	of	IN
cord-321150-ev6acl7b	149	4	recombination	recombination	NN
cord-321150-ev6acl7b	149	5	on	on	IN
cord-321150-ev6acl7b	149	6	the	the	DT
cord-321150-ev6acl7b	149	7	accuracy	accuracy	NN
cord-321150-ev6acl7b	149	8	of	of	IN
cord-321150-ev6acl7b	149	9	phylogeny	phylogeny	NN
cord-321150-ev6acl7b	149	10	estimation	estimation	NN
cord-321150-ev6acl7b	149	11	Recombination	Recombination	NNP
cord-321150-ev6acl7b	149	12	in	in	IN
cord-321150-ev6acl7b	149	13	evolutionary	evolutionary	JJ
cord-321150-ev6acl7b	149	14	genomics	genomic	NNS
cord-321150-ev6acl7b	149	15	Consequences	consequence	NNS
cord-321150-ev6acl7b	149	16	of	of	IN
cord-321150-ev6acl7b	149	17	recombination	recombination	NN
cord-321150-ev6acl7b	149	18	on	on	IN
cord-321150-ev6acl7b	149	19	traditional	traditional	JJ
cord-321150-ev6acl7b	149	20	phylogenetic	phylogenetic	JJ
cord-321150-ev6acl7b	149	21	analysis	analysis	NN
cord-321150-ev6acl7b	150	1	Molecular	molecular	JJ
cord-321150-ev6acl7b	150	2	epidemiology	epidemiology	NN
cord-321150-ev6acl7b	150	3	of	of	IN
cord-321150-ev6acl7b	150	4	dengue	dengue	NN
cord-321150-ev6acl7b	150	5	type	type	NN
cord-321150-ev6acl7b	150	6	2	2	CD
cord-321150-ev6acl7b	150	7	virus	virus	NN
cord-321150-ev6acl7b	150	8	in	in	IN
cord-321150-ev6acl7b	150	9	Venezuela	Venezuela	NNP
cord-321150-ev6acl7b	150	10	:	:	:
cord-321150-ev6acl7b	150	11	evidence	evidence	NN
cord-321150-ev6acl7b	150	12	for	for	IN
cord-321150-ev6acl7b	150	13	in	in	IN
cord-321150-ev6acl7b	150	14	situ	situ	NN
cord-321150-ev6acl7b	150	15	virus	virus	NN
cord-321150-ev6acl7b	150	16	evolution	evolution	NN
cord-321150-ev6acl7b	150	17	and	and	CC
cord-321150-ev6acl7b	150	18	recombination	recombination	NN
cord-321150-ev6acl7b	150	19	Genetic	genetic	JJ
cord-321150-ev6acl7b	150	20	diversity	diversity	NN
cord-321150-ev6acl7b	150	21	and	and	CC
cord-321150-ev6acl7b	150	22	evolution	evolution	NN
cord-321150-ev6acl7b	150	23	of	of	IN
cord-321150-ev6acl7b	150	24	dengue	dengue	NN
cord-321150-ev6acl7b	150	25	virus	virus	NN
cord-321150-ev6acl7b	150	26	serotype	serotype	NN
cord-321150-ev6acl7b	150	27	3	3	CD
cord-321150-ev6acl7b	150	28	:	:	:
cord-321150-ev6acl7b	150	29	a	a	DT
cord-321150-ev6acl7b	150	30	comparative	comparative	JJ
cord-321150-ev6acl7b	150	31	genomics	genomic	NNS
cord-321150-ev6acl7b	150	32	study	study	NN
cord-321150-ev6acl7b	150	33	Population	population	NN
cord-321150-ev6acl7b	150	34	genomics	genomic	NNS
cord-321150-ev6acl7b	150	35	of	of	IN
cord-321150-ev6acl7b	150	36	dengue	dengue	NN
cord-321150-ev6acl7b	150	37	virus	virus	NN
cord-321150-ev6acl7b	150	38	serotype	serotype	NN
cord-321150-ev6acl7b	150	39	4	4	CD
cord-321150-ev6acl7b	150	40	:	:	:
cord-321150-ev6acl7b	150	41	insights	insight	NNS
cord-321150-ev6acl7b	150	42	into	into	IN
cord-321150-ev6acl7b	150	43	genetic	genetic	JJ
cord-321150-ev6acl7b	150	44	structure	structure	NN
cord-321150-ev6acl7b	150	45	and	and	CC
cord-321150-ev6acl7b	150	46	evolution	evolution	NN
cord-321150-ev6acl7b	151	1	The	the	DT
cord-321150-ev6acl7b	151	2	effects	effect	NNS
cord-321150-ev6acl7b	151	3	of	of	IN
cord-321150-ev6acl7b	151	4	tertiary	tertiary	JJ
cord-321150-ev6acl7b	151	5	and	and	CC
cord-321150-ev6acl7b	151	6	quaternary	quaternary	JJ
cord-321150-ev6acl7b	151	7	infections	infection	NNS
cord-321150-ev6acl7b	151	8	on	on	IN
cord-321150-ev6acl7b	151	9	the	the	DT
cord-321150-ev6acl7b	151	10	epidemiology	epidemiology	NN
cord-321150-ev6acl7b	151	11	of	of	IN
cord-321150-ev6acl7b	151	12	dengue	dengue	NN
cord-321150-ev6acl7b	151	13	Widespread	widespread	JJ
cord-321150-ev6acl7b	151	14	intra	intra	JJ
cord-321150-ev6acl7b	151	15	-	-	JJ
cord-321150-ev6acl7b	151	16	serotype	serotype	JJ
cord-321150-ev6acl7b	151	17	recombination	recombination	NN
cord-321150-ev6acl7b	151	18	in	in	IN
cord-321150-ev6acl7b	151	19	natural	natural	JJ
cord-321150-ev6acl7b	151	20	populations	population	NNS
cord-321150-ev6acl7b	151	21	of	of	IN
cord-321150-ev6acl7b	151	22	dengue	dengue	NN
cord-321150-ev6acl7b	151	23	virus	virus	NN
cord-321150-ev6acl7b	151	24	Comparative	comparative	JJ
cord-321150-ev6acl7b	151	25	genomic	genomic	JJ
cord-321150-ev6acl7b	151	26	analysis	analysis	NN
cord-321150-ev6acl7b	151	27	of	of	IN
cord-321150-ev6acl7b	151	28	pre	pre	JJ
cord-321150-ev6acl7b	151	29	-	-	JJ
cord-321150-ev6acl7b	151	30	epidemic	epidemic	JJ
cord-321150-ev6acl7b	151	31	and	and	CC
cord-321150-ev6acl7b	151	32	epidemic	epidemic	NN
cord-321150-ev6acl7b	151	33	Zika	Zika	NNP
cord-321150-ev6acl7b	151	34	virus	virus	NN
cord-321150-ev6acl7b	151	35	strains	strain	VBZ
cord-321150-ev6acl7b	151	36	for	for	IN
cord-321150-ev6acl7b	151	37	virological	virological	JJ
cord-321150-ev6acl7b	151	38	factors	factor	NNS
cord-321150-ev6acl7b	151	39	potentially	potentially	RB
cord-321150-ev6acl7b	151	40	associated	associate	VBN
cord-321150-ev6acl7b	151	41	with	with	IN
cord-321150-ev6acl7b	151	42	the	the	DT
cord-321150-ev6acl7b	151	43	rapidly	rapidly	RB
cord-321150-ev6acl7b	151	44	expanding	expand	VBG
cord-321150-ev6acl7b	151	45	epidemic	epidemic	NN