id sid tid token lemma pos cord-267234-waz0k0ms 1 1 key key NN cord-267234-waz0k0ms 1 2 : : : cord-267234-waz0k0ms 1 3 cord-267234-waz0k0ms cord-267234-waz0k0ms CD cord-267234-waz0k0ms 1 4 authors author NNS cord-267234-waz0k0ms 1 5 : : : cord-267234-waz0k0ms 1 6 Shu Shu NNP cord-267234-waz0k0ms 1 7 , , , cord-267234-waz0k0ms 1 8 Chang Chang NNP cord-267234-waz0k0ms 1 9 ; ; : cord-267234-waz0k0ms 1 10 Wang Wang NNP cord-267234-waz0k0ms 1 11 , , , cord-267234-waz0k0ms 1 12 Shanchen Shanchen NNP cord-267234-waz0k0ms 1 13 ; ; : cord-267234-waz0k0ms 1 14 Xu Xu NNP cord-267234-waz0k0ms 1 15 , , , cord-267234-waz0k0ms 2 1 Tianjun Tianjun NNP cord-267234-waz0k0ms 2 2 title title NN cord-267234-waz0k0ms 2 3 : : : cord-267234-waz0k0ms 2 4 Characterization characterization NN cord-267234-waz0k0ms 2 5 of of IN cord-267234-waz0k0ms 2 6 the the DT cord-267234-waz0k0ms 2 7 duplicate duplicate JJ cord-267234-waz0k0ms 2 8 L l NN cord-267234-waz0k0ms 2 9 - - HYPH cord-267234-waz0k0ms 2 10 SIGN SIGN NNP cord-267234-waz0k0ms 2 11 and and CC cord-267234-waz0k0ms 2 12 DC DC NNP cord-267234-waz0k0ms 2 13 - - HYPH cord-267234-waz0k0ms 2 14 SIGN SIGN NNP cord-267234-waz0k0ms 2 15 genes gene NNS cord-267234-waz0k0ms 2 16 in in IN cord-267234-waz0k0ms 2 17 miiuy miiuy NNP cord-267234-waz0k0ms 2 18 croaker croaker NN cord-267234-waz0k0ms 2 19 and and CC cord-267234-waz0k0ms 2 20 evolutionary evolutionary JJ cord-267234-waz0k0ms 2 21 analysis analysis NN cord-267234-waz0k0ms 2 22 of of IN cord-267234-waz0k0ms 2 23 L l NN cord-267234-waz0k0ms 2 24 - - HYPH cord-267234-waz0k0ms 2 25 SIGN sign NN cord-267234-waz0k0ms 2 26 in in IN cord-267234-waz0k0ms 2 27 fishes fish NNS cord-267234-waz0k0ms 2 28 date date NN cord-267234-waz0k0ms 2 29 : : : cord-267234-waz0k0ms 2 30 2015 2015 CD cord-267234-waz0k0ms 2 31 - - HYPH cord-267234-waz0k0ms 2 32 01 01 CD cord-267234-waz0k0ms 2 33 - - SYM cord-267234-waz0k0ms 2 34 13 13 CD cord-267234-waz0k0ms 2 35 journal journal NN cord-267234-waz0k0ms 2 36 : : : cord-267234-waz0k0ms 2 37 Dev Dev NNP cord-267234-waz0k0ms 2 38 Comp Comp NNP cord-267234-waz0k0ms 2 39 Immunol Immunol NNP cord-267234-waz0k0ms 2 40 DOI doi NN cord-267234-waz0k0ms 2 41 : : : cord-267234-waz0k0ms 2 42 10.1016/ 10.1016/ CD cord-267234-waz0k0ms 3 1 j.dci.2015.01.004 j.dci.2015.01.004 NNP cord-267234-waz0k0ms 3 2 sha sha NNP cord-267234-waz0k0ms 4 1 : : : cord-267234-waz0k0ms 4 2 ab7c5bbcff6f13e19d69ea09e776cb830dedaf90 ab7c5bbcff6f13e19d69ea09e776cb830dedaf90 NNP cord-267234-waz0k0ms 4 3 doc_id doc_id NNP cord-267234-waz0k0ms 4 4 : : : cord-267234-waz0k0ms 5 1 267234 267234 CD cord-267234-waz0k0ms 5 2 cord_uid cord_uid NNS cord-267234-waz0k0ms 5 3 : : : cord-267234-waz0k0ms 6 1 waz0k0ms waz0k0ms NNP cord-267234-waz0k0ms 6 2 Dendritic dendritic JJ cord-267234-waz0k0ms 6 3 cell cell NN cord-267234-waz0k0ms 6 4 - - HYPH cord-267234-waz0k0ms 6 5 specific specific JJ cord-267234-waz0k0ms 6 6 ICAM-3-grabbing icam-3-grabbing NN cord-267234-waz0k0ms 7 1 non non JJ cord-267234-waz0k0ms 7 2 - - JJ cord-267234-waz0k0ms 7 3 integrin integrin JJ cord-267234-waz0k0ms 8 1 ( ( -LRB- cord-267234-waz0k0ms 8 2 DC DC NNP cord-267234-waz0k0ms 8 3 - - HYPH cord-267234-waz0k0ms 8 4 SIGN sign NN cord-267234-waz0k0ms 8 5 / / SYM cord-267234-waz0k0ms 8 6 CD209 cd209 NN cord-267234-waz0k0ms 8 7 ) ) -RRB- cord-267234-waz0k0ms 8 8 and and CC cord-267234-waz0k0ms 8 9 liver liver NN cord-267234-waz0k0ms 8 10 / / SYM cord-267234-waz0k0ms 8 11 lymph lymph NN cord-267234-waz0k0ms 8 12 node node NN cord-267234-waz0k0ms 8 13 - - HYPH cord-267234-waz0k0ms 8 14 specific specific JJ cord-267234-waz0k0ms 8 15 ICAM ICAM NNP cord-267234-waz0k0ms 8 16 - - HYPH cord-267234-waz0k0ms 8 17 grabbing grab VBG cord-267234-waz0k0ms 8 18 non non JJ cord-267234-waz0k0ms 8 19 - - JJ cord-267234-waz0k0ms 8 20 integrin integrin JJ cord-267234-waz0k0ms 9 1 ( ( -LRB- cord-267234-waz0k0ms 9 2 L l NN cord-267234-waz0k0ms 9 3 - - HYPH cord-267234-waz0k0ms 9 4 SIGN sign NN cord-267234-waz0k0ms 9 5 / / SYM cord-267234-waz0k0ms 9 6 CD299 cd299 NN cord-267234-waz0k0ms 9 7 ) ) -RRB- cord-267234-waz0k0ms 9 8 which which WDT cord-267234-waz0k0ms 9 9 are be VBP cord-267234-waz0k0ms 9 10 homologues homologue NNS cord-267234-waz0k0ms 9 11 of of IN cord-267234-waz0k0ms 9 12 DC DC NNP cord-267234-waz0k0ms 9 13 - - HYPH cord-267234-waz0k0ms 9 14 SIGN SIGN NNP cord-267234-waz0k0ms 9 15 are be VBP cord-267234-waz0k0ms 9 16 important important JJ cord-267234-waz0k0ms 9 17 members member NNS cord-267234-waz0k0ms 9 18 in in IN cord-267234-waz0k0ms 9 19 C c NN cord-267234-waz0k0ms 9 20 - - HYPH cord-267234-waz0k0ms 9 21 type type NN cord-267234-waz0k0ms 9 22 lectin lectin NN cord-267234-waz0k0ms 9 23 receptors receptor NNS cord-267234-waz0k0ms 9 24 family family NN cord-267234-waz0k0ms 9 25 as as IN cord-267234-waz0k0ms 9 26 key key JJ cord-267234-waz0k0ms 9 27 molecules molecule NNS cord-267234-waz0k0ms 9 28 to to TO cord-267234-waz0k0ms 9 29 recognize recognize VB cord-267234-waz0k0ms 9 30 and and CC cord-267234-waz0k0ms 9 31 eliminate eliminate VB cord-267234-waz0k0ms 9 32 pathogens pathogen NNS cord-267234-waz0k0ms 9 33 in in IN cord-267234-waz0k0ms 9 34 the the DT cord-267234-waz0k0ms 9 35 innate innate JJ cord-267234-waz0k0ms 9 36 immune immune JJ cord-267234-waz0k0ms 9 37 system system NN cord-267234-waz0k0ms 9 38 . . . cord-267234-waz0k0ms 10 1 DC DC NNP cord-267234-waz0k0ms 10 2 - - HYPH cord-267234-waz0k0ms 10 3 SIGN SIGN NNP cord-267234-waz0k0ms 10 4 and and CC cord-267234-waz0k0ms 10 5 L l NN cord-267234-waz0k0ms 10 6 - - HYPH cord-267234-waz0k0ms 10 7 SIGN sign NN cord-267234-waz0k0ms 10 8 have have VBP cord-267234-waz0k0ms 10 9 become become VBN cord-267234-waz0k0ms 10 10 hot hot JJ cord-267234-waz0k0ms 10 11 topics topic NNS cord-267234-waz0k0ms 10 12 in in IN cord-267234-waz0k0ms 10 13 recent recent JJ cord-267234-waz0k0ms 10 14 studies study NNS cord-267234-waz0k0ms 10 15 which which WDT cord-267234-waz0k0ms 10 16 both both DT cord-267234-waz0k0ms 10 17 served serve VBD cord-267234-waz0k0ms 10 18 as as IN cord-267234-waz0k0ms 10 19 cell cell NN cord-267234-waz0k0ms 10 20 adhesion adhesion NN cord-267234-waz0k0ms 10 21 and and CC cord-267234-waz0k0ms 10 22 phagocytic phagocytic JJ cord-267234-waz0k0ms 10 23 pathogen pathogen NN cord-267234-waz0k0ms 10 24 recognition recognition NN cord-267234-waz0k0ms 10 25 receptors receptor NNS cord-267234-waz0k0ms 10 26 in in IN cord-267234-waz0k0ms 10 27 mammals mammal NNS cord-267234-waz0k0ms 10 28 . . . cord-267234-waz0k0ms 11 1 However however RB cord-267234-waz0k0ms 11 2 , , , cord-267234-waz0k0ms 11 3 there there EX cord-267234-waz0k0ms 11 4 have have VBP cord-267234-waz0k0ms 11 5 been be VBN cord-267234-waz0k0ms 11 6 almost almost RB cord-267234-waz0k0ms 11 7 no no DT cord-267234-waz0k0ms 11 8 studies study NNS cord-267234-waz0k0ms 11 9 of of IN cord-267234-waz0k0ms 11 10 DC DC NNP cord-267234-waz0k0ms 11 11 - - HYPH cord-267234-waz0k0ms 11 12 SIGN SIGN NNP cord-267234-waz0k0ms 11 13 and and CC cord-267234-waz0k0ms 11 14 L l NN cord-267234-waz0k0ms 11 15 - - HYPH cord-267234-waz0k0ms 11 16 SIGN sign NN cord-267234-waz0k0ms 11 17 structure structure NN cord-267234-waz0k0ms 11 18 and and CC cord-267234-waz0k0ms 11 19 characters character NNS cord-267234-waz0k0ms 11 20 in in IN cord-267234-waz0k0ms 11 21 fish fish NN cord-267234-waz0k0ms 11 22 , , , cord-267234-waz0k0ms 11 23 only only RB cord-267234-waz0k0ms 11 24 DC DC NNP cord-267234-waz0k0ms 11 25 - - HYPH cord-267234-waz0k0ms 11 26 SIGN sign NN cord-267234-waz0k0ms 11 27 in in IN cord-267234-waz0k0ms 11 28 the the DT cord-267234-waz0k0ms 11 29 zebrafish zebrafish NN cord-267234-waz0k0ms 11 30 had have VBD cord-267234-waz0k0ms 11 31 been be VBN cord-267234-waz0k0ms 11 32 studied study VBN cord-267234-waz0k0ms 11 33 . . . cord-267234-waz0k0ms 12 1 In in IN cord-267234-waz0k0ms 12 2 our -PRON- PRP$ cord-267234-waz0k0ms 12 3 study study NN cord-267234-waz0k0ms 12 4 , , , cord-267234-waz0k0ms 12 5 we -PRON- PRP cord-267234-waz0k0ms 12 6 identified identify VBD cord-267234-waz0k0ms 12 7 and and CC cord-267234-waz0k0ms 12 8 characterized characterize VBD cord-267234-waz0k0ms 12 9 the the DT cord-267234-waz0k0ms 12 10 full full JJ cord-267234-waz0k0ms 12 11 - - HYPH cord-267234-waz0k0ms 12 12 length length NN cord-267234-waz0k0ms 12 13 miiuy miiuy JJ cord-267234-waz0k0ms 12 14 croaker croaker NN cord-267234-waz0k0ms 12 15 ( ( -LRB- cord-267234-waz0k0ms 12 16 Miichthys Miichthys NNP cord-267234-waz0k0ms 12 17 miiuy miiuy NNP cord-267234-waz0k0ms 12 18 ) ) -RRB- cord-267234-waz0k0ms 12 19 DC DC NNP cord-267234-waz0k0ms 12 20 - - HYPH cord-267234-waz0k0ms 12 21 SIGN sign NN cord-267234-waz0k0ms 12 22 ( ( -LRB- cord-267234-waz0k0ms 12 23 mmDC mmdc NN cord-267234-waz0k0ms 12 24 - - HYPH cord-267234-waz0k0ms 12 25 SIGN sign NN cord-267234-waz0k0ms 12 26 ) ) -RRB- cord-267234-waz0k0ms 12 27 and and CC cord-267234-waz0k0ms 12 28 L l NN cord-267234-waz0k0ms 12 29 - - HYPH cord-267234-waz0k0ms 12 30 SIGN sign NN cord-267234-waz0k0ms 12 31 ( ( -LRB- cord-267234-waz0k0ms 12 32 mmL mmL NNP cord-267234-waz0k0ms 12 33 - - HYPH cord-267234-waz0k0ms 12 34 SIGN sign NN cord-267234-waz0k0ms 12 35 ) ) -RRB- cord-267234-waz0k0ms 12 36 genes gene NNS cord-267234-waz0k0ms 12 37 . . . cord-267234-waz0k0ms 13 1 The the DT cord-267234-waz0k0ms 13 2 sequence sequence NN cord-267234-waz0k0ms 13 3 analysis analysis NN cord-267234-waz0k0ms 13 4 results result NNS cord-267234-waz0k0ms 13 5 showed show VBD cord-267234-waz0k0ms 13 6 that that IN cord-267234-waz0k0ms 13 7 mmDC mmdc NN cord-267234-waz0k0ms 13 8 - - HYPH cord-267234-waz0k0ms 13 9 SIGN sign NN cord-267234-waz0k0ms 13 10 and and CC cord-267234-waz0k0ms 13 11 mmL mml NN cord-267234-waz0k0ms 13 12 - - HYPH cord-267234-waz0k0ms 13 13 SIGN sign NN cord-267234-waz0k0ms 13 14 have have VBP cord-267234-waz0k0ms 13 15 the the DT cord-267234-waz0k0ms 13 16 same same JJ cord-267234-waz0k0ms 13 17 domains domain NNS cord-267234-waz0k0ms 13 18 with with IN cord-267234-waz0k0ms 13 19 other other JJ cord-267234-waz0k0ms 13 20 vertebrates vertebrate NNS cord-267234-waz0k0ms 13 21 except except IN cord-267234-waz0k0ms 13 22 primates primate NNS cord-267234-waz0k0ms 13 23 , , , cord-267234-waz0k0ms 13 24 and and CC cord-267234-waz0k0ms 13 25 share share VB cord-267234-waz0k0ms 13 26 some some DT cord-267234-waz0k0ms 13 27 conserved conserve VBN cord-267234-waz0k0ms 13 28 motifs motif NNS cord-267234-waz0k0ms 13 29 in in IN cord-267234-waz0k0ms 13 30 CRD crd NN cord-267234-waz0k0ms 13 31 among among IN cord-267234-waz0k0ms 13 32 all all PDT cord-267234-waz0k0ms 13 33 the the DT cord-267234-waz0k0ms 13 34 vertebrates vertebrate NNS cord-267234-waz0k0ms 13 35 which which WDT cord-267234-waz0k0ms 13 36 play play VBP cord-267234-waz0k0ms 13 37 a a DT cord-267234-waz0k0ms 13 38 crucial crucial JJ cord-267234-waz0k0ms 13 39 role role NN cord-267234-waz0k0ms 13 40 in in IN cord-267234-waz0k0ms 13 41 interacting interact VBG cord-267234-waz0k0ms 13 42 with with IN cord-267234-waz0k0ms 13 43 Ca(2 Ca(2 NNP cord-267234-waz0k0ms 13 44 + + CC cord-267234-waz0k0ms 13 45 ) ) -RRB- cord-267234-waz0k0ms 13 46 and and CC cord-267234-waz0k0ms 13 47 for for IN cord-267234-waz0k0ms 13 48 recognizing recognize VBG cord-267234-waz0k0ms 13 49 mannose mannose NN cord-267234-waz0k0ms 13 50 - - HYPH cord-267234-waz0k0ms 13 51 containing contain VBG cord-267234-waz0k0ms 13 52 motifs motif NNS cord-267234-waz0k0ms 13 53 . . . cord-267234-waz0k0ms 14 1 Gene gene NN cord-267234-waz0k0ms 14 2 synteny synteny NN cord-267234-waz0k0ms 14 3 of of IN cord-267234-waz0k0ms 14 4 DC DC NNP cord-267234-waz0k0ms 14 5 - - HYPH cord-267234-waz0k0ms 14 6 SIGN SIGN NNP cord-267234-waz0k0ms 14 7 and and CC cord-267234-waz0k0ms 14 8 L l NN cord-267234-waz0k0ms 14 9 - - HYPH cord-267234-waz0k0ms 14 10 SIGN SIGN NNP cord-267234-waz0k0ms 14 11 were be VBD cord-267234-waz0k0ms 14 12 analyzed analyze VBN cord-267234-waz0k0ms 14 13 for for IN cord-267234-waz0k0ms 14 14 the the DT cord-267234-waz0k0ms 14 15 first first JJ cord-267234-waz0k0ms 14 16 time time NN cord-267234-waz0k0ms 14 17 and and CC cord-267234-waz0k0ms 14 18 gene gene NN cord-267234-waz0k0ms 14 19 synteny synteny NN cord-267234-waz0k0ms 14 20 of of IN cord-267234-waz0k0ms 14 21 L L NNP cord-267234-waz0k0ms 14 22 - - HYPH cord-267234-waz0k0ms 14 23 SIGN SIGN NNP cord-267234-waz0k0ms 14 24 was be VBD cord-267234-waz0k0ms 14 25 conserved conserve VBN cord-267234-waz0k0ms 14 26 among among IN cord-267234-waz0k0ms 14 27 the the DT cord-267234-waz0k0ms 14 28 five five CD cord-267234-waz0k0ms 14 29 fishes fish NNS cord-267234-waz0k0ms 14 30 . . . cord-267234-waz0k0ms 15 1 Interestingly interestingly RB cord-267234-waz0k0ms 15 2 , , , cord-267234-waz0k0ms 15 3 one one CD cord-267234-waz0k0ms 15 4 gene gene NN cord-267234-waz0k0ms 15 5 next next RB cord-267234-waz0k0ms 15 6 to to IN cord-267234-waz0k0ms 15 7 L l NN cord-267234-waz0k0ms 15 8 - - HYPH cord-267234-waz0k0ms 15 9 SIGN sign NN cord-267234-waz0k0ms 15 10 from from IN cord-267234-waz0k0ms 15 11 gene gene NN cord-267234-waz0k0ms 15 12 synteny synteny NNP cord-267234-waz0k0ms 15 13 had have VBD cord-267234-waz0k0ms 15 14 high high JJ cord-267234-waz0k0ms 15 15 similarity similarity NN cord-267234-waz0k0ms 15 16 with with IN cord-267234-waz0k0ms 15 17 L l NN cord-267234-waz0k0ms 15 18 - - HYPH cord-267234-waz0k0ms 15 19 SIGN sign NN cord-267234-waz0k0ms 15 20 gene gene NN cord-267234-waz0k0ms 15 21 that that WDT cord-267234-waz0k0ms 15 22 was be VBD cord-267234-waz0k0ms 15 23 described describe VBN cord-267234-waz0k0ms 15 24 as as IN cord-267234-waz0k0ms 15 25 L l NN cord-267234-waz0k0ms 15 26 - - HYPH cord-267234-waz0k0ms 15 27 SIGN sign NN cord-267234-waz0k0ms 15 28 - - HYPH cord-267234-waz0k0ms 15 29 like like JJ cord-267234-waz0k0ms 15 30 in in IN cord-267234-waz0k0ms 15 31 fish fish NN cord-267234-waz0k0ms 15 32 species specie NNS cord-267234-waz0k0ms 15 33 . . . cord-267234-waz0k0ms 16 1 While while IN cord-267234-waz0k0ms 16 2 only only RB cord-267234-waz0k0ms 16 3 one one CD cord-267234-waz0k0ms 16 4 L l NN cord-267234-waz0k0ms 16 5 - - HYPH cord-267234-waz0k0ms 16 6 SIGN sign NN cord-267234-waz0k0ms 16 7 gene gene NN cord-267234-waz0k0ms 16 8 existed exist VBD cord-267234-waz0k0ms 16 9 in in IN cord-267234-waz0k0ms 16 10 other other JJ cord-267234-waz0k0ms 16 11 vertebrates vertebrate NNS cord-267234-waz0k0ms 16 12 , , , cord-267234-waz0k0ms 16 13 two two CD cord-267234-waz0k0ms 16 14 L l NN cord-267234-waz0k0ms 16 15 - - HYPH cord-267234-waz0k0ms 16 16 SIGN sign NN cord-267234-waz0k0ms 16 17 in in IN cord-267234-waz0k0ms 16 18 fish fish NN cord-267234-waz0k0ms 16 19 may may MD cord-267234-waz0k0ms 16 20 be be VB cord-267234-waz0k0ms 16 21 in in IN cord-267234-waz0k0ms 16 22 consequence consequence NN cord-267234-waz0k0ms 16 23 of of IN cord-267234-waz0k0ms 16 24 the the DT cord-267234-waz0k0ms 16 25 fish fish NN cord-267234-waz0k0ms 16 26 - - HYPH cord-267234-waz0k0ms 16 27 specific specific JJ cord-267234-waz0k0ms 16 28 genome genome NN cord-267234-waz0k0ms 16 29 duplication duplication NN cord-267234-waz0k0ms 16 30 to to TO cord-267234-waz0k0ms 16 31 adapt adapt VB cord-267234-waz0k0ms 16 32 the the DT cord-267234-waz0k0ms 16 33 specific specific JJ cord-267234-waz0k0ms 16 34 environment environment NN cord-267234-waz0k0ms 16 35 . . . cord-267234-waz0k0ms 17 1 The the DT cord-267234-waz0k0ms 17 2 evolutionary evolutionary JJ cord-267234-waz0k0ms 17 3 analysis analysis NN cord-267234-waz0k0ms 17 4 showed show VBD cord-267234-waz0k0ms 17 5 that that IN cord-267234-waz0k0ms 17 6 the the DT cord-267234-waz0k0ms 17 7 ancestral ancestral JJ cord-267234-waz0k0ms 17 8 lineages lineage NNS cord-267234-waz0k0ms 17 9 of of IN cord-267234-waz0k0ms 17 10 L L NNP cord-267234-waz0k0ms 17 11 - - HYPH cord-267234-waz0k0ms 17 12 SIGN sign NN cord-267234-waz0k0ms 17 13 gene gene NN cord-267234-waz0k0ms 17 14 in in IN cord-267234-waz0k0ms 17 15 fishes fish NNS cord-267234-waz0k0ms 17 16 experienced experience VBD cord-267234-waz0k0ms 17 17 purifying purify VBG cord-267234-waz0k0ms 17 18 selection selection NN cord-267234-waz0k0ms 17 19 and and CC cord-267234-waz0k0ms 17 20 the the DT cord-267234-waz0k0ms 17 21 current current JJ cord-267234-waz0k0ms 17 22 lineages lineage NNS cord-267234-waz0k0ms 17 23 of of IN cord-267234-waz0k0ms 17 24 L l NN cord-267234-waz0k0ms 17 25 - - HYPH cord-267234-waz0k0ms 17 26 SIGN sign NN cord-267234-waz0k0ms 17 27 gene gene NN cord-267234-waz0k0ms 17 28 in in IN cord-267234-waz0k0ms 17 29 fishes fish NNS cord-267234-waz0k0ms 17 30 underwent undergo VBD cord-267234-waz0k0ms 17 31 positive positive JJ cord-267234-waz0k0ms 17 32 selection selection NN cord-267234-waz0k0ms 17 33 , , , cord-267234-waz0k0ms 17 34 indicating indicate VBG cord-267234-waz0k0ms 17 35 that that IN cord-267234-waz0k0ms 17 36 the the DT cord-267234-waz0k0ms 17 37 ancestral ancestral JJ cord-267234-waz0k0ms 17 38 lineages lineage NNS cord-267234-waz0k0ms 17 39 and and CC cord-267234-waz0k0ms 17 40 current current JJ cord-267234-waz0k0ms 17 41 lineages lineage NNS cord-267234-waz0k0ms 17 42 of of IN cord-267234-waz0k0ms 17 43 L l NN cord-267234-waz0k0ms 17 44 - - HYPH cord-267234-waz0k0ms 17 45 SIGN sign NN cord-267234-waz0k0ms 17 46 gene gene NN cord-267234-waz0k0ms 17 47 in in IN cord-267234-waz0k0ms 17 48 fishes fish NNS cord-267234-waz0k0ms 17 49 underwent undergo VBD cord-267234-waz0k0ms 17 50 different different JJ cord-267234-waz0k0ms 17 51 evolutionary evolutionary JJ cord-267234-waz0k0ms 17 52 patterns pattern NNS cord-267234-waz0k0ms 17 53 . . . cord-267234-waz0k0ms 18 1 Both both DT cord-267234-waz0k0ms 18 2 mmDC mmdc NN cord-267234-waz0k0ms 18 3 - - HYPH cord-267234-waz0k0ms 18 4 SIGN sign NN cord-267234-waz0k0ms 18 5 and and CC cord-267234-waz0k0ms 18 6 mmL mml NN cord-267234-waz0k0ms 18 7 - - HYPH cord-267234-waz0k0ms 18 8 SIGN sign NN cord-267234-waz0k0ms 18 9 were be VBD cord-267234-waz0k0ms 18 10 expressed express VBN cord-267234-waz0k0ms 18 11 in in IN cord-267234-waz0k0ms 18 12 all all DT cord-267234-waz0k0ms 18 13 tested test VBN cord-267234-waz0k0ms 18 14 tissues tissue NNS cord-267234-waz0k0ms 18 15 and and CC cord-267234-waz0k0ms 18 16 ubiquitously ubiquitously RB cord-267234-waz0k0ms 18 17 up up RB cord-267234-waz0k0ms 18 18 - - HYPH cord-267234-waz0k0ms 18 19 regulated regulate VBN cord-267234-waz0k0ms 18 20 in in IN cord-267234-waz0k0ms 18 21 infected infected JJ cord-267234-waz0k0ms 18 22 liver liver NN cord-267234-waz0k0ms 18 23 , , , cord-267234-waz0k0ms 18 24 spleen spleen NN cord-267234-waz0k0ms 18 25 and and CC cord-267234-waz0k0ms 18 26 kidney kidney NN cord-267234-waz0k0ms 18 27 at at IN cord-267234-waz0k0ms 18 28 different different JJ cord-267234-waz0k0ms 18 29 sampling sampling NN cord-267234-waz0k0ms 18 30 time time NN cord-267234-waz0k0ms 18 31 points point NNS cord-267234-waz0k0ms 18 32 , , , cord-267234-waz0k0ms 18 33 indicating indicate VBG cord-267234-waz0k0ms 18 34 that that IN cord-267234-waz0k0ms 18 35 the the DT cord-267234-waz0k0ms 18 36 mmDC mmdc NN cord-267234-waz0k0ms 18 37 - - HYPH cord-267234-waz0k0ms 18 38 SIGN sign NN cord-267234-waz0k0ms 18 39 and and CC cord-267234-waz0k0ms 18 40 mmL mmL NNP cord-267234-waz0k0ms 18 41 - - HYPH cord-267234-waz0k0ms 18 42 SIGN sign NN cord-267234-waz0k0ms 18 43 participated participate VBD cord-267234-waz0k0ms 18 44 in in IN cord-267234-waz0k0ms 18 45 the the DT cord-267234-waz0k0ms 18 46 immune immune JJ cord-267234-waz0k0ms 18 47 response response NN cord-267234-waz0k0ms 18 48 to to IN cord-267234-waz0k0ms 18 49 defense defense NN cord-267234-waz0k0ms 18 50 against against IN cord-267234-waz0k0ms 18 51 bacteria bacteria NNS cord-267234-waz0k0ms 18 52 infection infection NN cord-267234-waz0k0ms 18 53 . . . cord-267234-waz0k0ms 19 1 Innate innate JJ cord-267234-waz0k0ms 19 2 immunity immunity NN cord-267234-waz0k0ms 19 3 acts act NNS cord-267234-waz0k0ms 19 4 in in IN cord-267234-waz0k0ms 19 5 the the DT cord-267234-waz0k0ms 19 6 first first JJ cord-267234-waz0k0ms 19 7 line line NN cord-267234-waz0k0ms 19 8 of of IN cord-267234-waz0k0ms 19 9 immune immune JJ cord-267234-waz0k0ms 19 10 defense defense NN cord-267234-waz0k0ms 19 11 mechanisms mechanism NNS cord-267234-waz0k0ms 19 12 , , , cord-267234-waz0k0ms 19 13 having have VBG cord-267234-waz0k0ms 19 14 an an DT cord-267234-waz0k0ms 19 15 important important JJ cord-267234-waz0k0ms 19 16 function function NN cord-267234-waz0k0ms 19 17 against against IN cord-267234-waz0k0ms 19 18 foreign foreign JJ cord-267234-waz0k0ms 19 19 pathogens pathogen NNS cord-267234-waz0k0ms 19 20 in in IN cord-267234-waz0k0ms 19 21 vertebrates vertebrate NNS cord-267234-waz0k0ms 19 22 and and CC cord-267234-waz0k0ms 19 23 invertebrates invertebrate NNS cord-267234-waz0k0ms 19 24 . . . cord-267234-waz0k0ms 20 1 In in IN cord-267234-waz0k0ms 20 2 teleosts teleost NNS cord-267234-waz0k0ms 20 3 , , , cord-267234-waz0k0ms 20 4 the the DT cord-267234-waz0k0ms 20 5 innate innate JJ cord-267234-waz0k0ms 20 6 immune immune JJ cord-267234-waz0k0ms 20 7 system system NN cord-267234-waz0k0ms 20 8 plays play VBZ cord-267234-waz0k0ms 20 9 a a DT cord-267234-waz0k0ms 20 10 critical critical JJ cord-267234-waz0k0ms 20 11 role role NN cord-267234-waz0k0ms 20 12 in in IN cord-267234-waz0k0ms 20 13 protecting protect VBG cord-267234-waz0k0ms 20 14 organism organism NN cord-267234-waz0k0ms 20 15 against against IN cord-267234-waz0k0ms 20 16 invading invade VBG cord-267234-waz0k0ms 20 17 pathogens pathogen NNS cord-267234-waz0k0ms 21 1 ( ( -LRB- cord-267234-waz0k0ms 21 2 Aoki Aoki NNP cord-267234-waz0k0ms 21 3 et et NNP cord-267234-waz0k0ms 21 4 al al NNP cord-267234-waz0k0ms 21 5 . . NNP cord-267234-waz0k0ms 21 6 , , , cord-267234-waz0k0ms 21 7 2013 2013 CD cord-267234-waz0k0ms 21 8 ) ) -RRB- cord-267234-waz0k0ms 21 9 . . . cord-267234-waz0k0ms 22 1 Pattern pattern NN cord-267234-waz0k0ms 22 2 recognition recognition NN cord-267234-waz0k0ms 22 3 receptors receptor NNS cord-267234-waz0k0ms 22 4 ( ( -LRB- cord-267234-waz0k0ms 22 5 PRRs PRRs NNP cord-267234-waz0k0ms 22 6 ) ) -RRB- cord-267234-waz0k0ms 22 7 including include VBG cord-267234-waz0k0ms 22 8 Toll toll NN cord-267234-waz0k0ms 22 9 - - HYPH cord-267234-waz0k0ms 22 10 like like JJ cord-267234-waz0k0ms 22 11 receptors receptor NNS cord-267234-waz0k0ms 22 12 ( ( -LRB- cord-267234-waz0k0ms 22 13 TLRs TLRs NNP cord-267234-waz0k0ms 22 14 ) ) -RRB- cord-267234-waz0k0ms 22 15 , , , cord-267234-waz0k0ms 22 16 C c NN cord-267234-waz0k0ms 22 17 - - HYPH cord-267234-waz0k0ms 22 18 type type NN cord-267234-waz0k0ms 22 19 lectin lectin NN cord-267234-waz0k0ms 22 20 receptors receptor NNS cord-267234-waz0k0ms 22 21 ( ( -LRB- cord-267234-waz0k0ms 22 22 CLRs CLRs NNP cord-267234-waz0k0ms 22 23 ) ) -RRB- cord-267234-waz0k0ms 22 24 , , , cord-267234-waz0k0ms 22 25 NOD NOD NNP cord-267234-waz0k0ms 22 26 - - HYPH cord-267234-waz0k0ms 22 27 like like JJ cord-267234-waz0k0ms 22 28 receptors receptor NNS cord-267234-waz0k0ms 22 29 ( ( -LRB- cord-267234-waz0k0ms 22 30 NLRs NLRs NNP cord-267234-waz0k0ms 22 31 ) ) -RRB- cord-267234-waz0k0ms 22 32 and and CC cord-267234-waz0k0ms 22 33 RIG rig NN cord-267234-waz0k0ms 22 34 - - : cord-267234-waz0k0ms 22 35 I -PRON- PRP cord-267234-waz0k0ms 22 36 like like IN cord-267234-waz0k0ms 22 37 receptors receptor NNS cord-267234-waz0k0ms 22 38 ( ( -LRB- cord-267234-waz0k0ms 22 39 RLRs rlr NNS cord-267234-waz0k0ms 22 40 ) ) -RRB- cord-267234-waz0k0ms 22 41 on on IN cord-267234-waz0k0ms 22 42 antigenpresenting antigenpresente VBG cord-267234-waz0k0ms 22 43 cells cell NNS cord-267234-waz0k0ms 22 44 play play VBP cord-267234-waz0k0ms 22 45 a a DT cord-267234-waz0k0ms 22 46 significant significant JJ cord-267234-waz0k0ms 22 47 role role NN cord-267234-waz0k0ms 22 48 in in IN cord-267234-waz0k0ms 22 49 innate innate JJ cord-267234-waz0k0ms 22 50 immunity immunity NN cord-267234-waz0k0ms 22 51 which which WDT cord-267234-waz0k0ms 22 52 recognize recognize VBP cord-267234-waz0k0ms 22 53 pathogen pathogen NN cord-267234-waz0k0ms 22 54 associated associate VBD cord-267234-waz0k0ms 22 55 molecular molecular JJ cord-267234-waz0k0ms 22 56 patterns pattern NNS cord-267234-waz0k0ms 22 57 ( ( -LRB- cord-267234-waz0k0ms 22 58 PAMPs pamp NNS cord-267234-waz0k0ms 22 59 ) ) -RRB- cord-267234-waz0k0ms 22 60 ( ( -LRB- cord-267234-waz0k0ms 22 61 Zhu zhu FW cord-267234-waz0k0ms 22 62 et et FW cord-267234-waz0k0ms 22 63 al al NNP cord-267234-waz0k0ms 22 64 . . NNP cord-267234-waz0k0ms 22 65 , , , cord-267234-waz0k0ms 22 66 2013a 2013a CD cord-267234-waz0k0ms 22 67 ) ) -RRB- cord-267234-waz0k0ms 22 68 . . . cord-267234-waz0k0ms 23 1 C c NN cord-267234-waz0k0ms 23 2 - - HYPH cord-267234-waz0k0ms 23 3 type type NN cord-267234-waz0k0ms 23 4 lectin lectin NN cord-267234-waz0k0ms 23 5 receptors receptor NNS cord-267234-waz0k0ms 23 6 ( ( -LRB- cord-267234-waz0k0ms 23 7 CLRs CLRs NNP cord-267234-waz0k0ms 23 8 ) ) -RRB- cord-267234-waz0k0ms 23 9 characterized characterize VBN cord-267234-waz0k0ms 23 10 by by IN cord-267234-waz0k0ms 23 11 the the DT cord-267234-waz0k0ms 23 12 presence presence NN cord-267234-waz0k0ms 23 13 of of IN cord-267234-waz0k0ms 23 14 one one CD cord-267234-waz0k0ms 23 15 or or CC cord-267234-waz0k0ms 23 16 more more RBR cord-267234-waz0k0ms 23 17 homologous homologous JJ cord-267234-waz0k0ms 23 18 carbohydrate carbohydrate NN cord-267234-waz0k0ms 23 19 - - HYPH cord-267234-waz0k0ms 23 20 recognition recognition NN cord-267234-waz0k0ms 23 21 domain domain NN cord-267234-waz0k0ms 23 22 ( ( -LRB- cord-267234-waz0k0ms 23 23 CRD CRD NNP cord-267234-waz0k0ms 23 24 ) ) -RRB- cord-267234-waz0k0ms 23 25 are be VBP cord-267234-waz0k0ms 23 26 a a DT cord-267234-waz0k0ms 23 27 large large JJ cord-267234-waz0k0ms 23 28 family family NN cord-267234-waz0k0ms 23 29 of of IN cord-267234-waz0k0ms 23 30 Ca Ca NNP cord-267234-waz0k0ms 23 31 2 2 CD cord-267234-waz0k0ms 23 32 + + SYM cord-267234-waz0k0ms 23 33 -dependent -dependent CD cord-267234-waz0k0ms 23 34 carbohydrate carbohydrate NN cord-267234-waz0k0ms 23 35 binding binding NN cord-267234-waz0k0ms 23 36 proteins protein NNS cord-267234-waz0k0ms 23 37 which which WDT cord-267234-waz0k0ms 23 38 can can MD cord-267234-waz0k0ms 23 39 specifically specifically RB cord-267234-waz0k0ms 23 40 recognize recognize VB cord-267234-waz0k0ms 23 41 a a DT cord-267234-waz0k0ms 23 42 number number NN cord-267234-waz0k0ms 23 43 of of IN cord-267234-waz0k0ms 23 44 PAMPs pamp NNS cord-267234-waz0k0ms 23 45 including include VBG cord-267234-waz0k0ms 23 46 bacteria bacteria NNS cord-267234-waz0k0ms 23 47 , , , cord-267234-waz0k0ms 23 48 viruses virus NNS cord-267234-waz0k0ms 23 49 , , , cord-267234-waz0k0ms 23 50 parasites parasite NNS cord-267234-waz0k0ms 23 51 and and CC cord-267234-waz0k0ms 23 52 fungi fungus NNS cord-267234-waz0k0ms 23 53 ( ( -LRB- cord-267234-waz0k0ms 23 54 Lepenies Lepenies NNPS cord-267234-waz0k0ms 23 55 et et NNP cord-267234-waz0k0ms 23 56 al al NNP cord-267234-waz0k0ms 23 57 . . NNP cord-267234-waz0k0ms 23 58 , , , cord-267234-waz0k0ms 23 59 2013 2013 CD cord-267234-waz0k0ms 23 60 ) ) -RRB- cord-267234-waz0k0ms 23 61 . . . cord-267234-waz0k0ms 24 1 The the DT cord-267234-waz0k0ms 24 2 CLRs clr NNS cord-267234-waz0k0ms 24 3 including include VBG cord-267234-waz0k0ms 24 4 the the DT cord-267234-waz0k0ms 24 5 collectins collectin NNS cord-267234-waz0k0ms 24 6 , , , cord-267234-waz0k0ms 24 7 selectins selectin NNS cord-267234-waz0k0ms 24 8 , , , cord-267234-waz0k0ms 24 9 lymphocyte lymphocyte NN cord-267234-waz0k0ms 24 10 lectins lectin NNS cord-267234-waz0k0ms 24 11 and and CC cord-267234-waz0k0ms 24 12 proteoglycans proteoglycan NNS cord-267234-waz0k0ms 24 13 were be VBD cord-267234-waz0k0ms 24 14 initially initially RB cord-267234-waz0k0ms 24 15 divided divide VBN cord-267234-waz0k0ms 24 16 into into IN cord-267234-waz0k0ms 24 17 two two CD cord-267234-waz0k0ms 24 18 types type NNS cord-267234-waz0k0ms 24 19 based base VBN cord-267234-waz0k0ms 24 20 on on IN cord-267234-waz0k0ms 24 21 the the DT cord-267234-waz0k0ms 24 22 quantity quantity NN cord-267234-waz0k0ms 24 23 of of IN cord-267234-waz0k0ms 24 24 conserved conserved JJ cord-267234-waz0k0ms 24 25 CRDs crd NNS cord-267234-waz0k0ms 24 26 : : : cord-267234-waz0k0ms 25 1 Type type NN cord-267234-waz0k0ms 25 2 I -PRON- PRP cord-267234-waz0k0ms 25 3 CLRs clr VBZ cord-267234-waz0k0ms 25 4 such such JJ cord-267234-waz0k0ms 25 5 as as IN cord-267234-waz0k0ms 25 6 the the DT cord-267234-waz0k0ms 25 7 macrophagemannose macrophagemannose NNP cord-267234-waz0k0ms 25 8 receptor receptor NN cord-267234-waz0k0ms 25 9 , , , cord-267234-waz0k0ms 25 10 DEC205 DEC205 NNP cord-267234-waz0k0ms 25 11 and and CC cord-267234-waz0k0ms 25 12 selectins selectin NNS cord-267234-waz0k0ms 25 13 have have VBP cord-267234-waz0k0ms 25 14 multiple multiple JJ cord-267234-waz0k0ms 25 15 CRDs crd NNS cord-267234-waz0k0ms 25 16 at at IN cord-267234-waz0k0ms 25 17 their -PRON- PRP$ cord-267234-waz0k0ms 25 18 NH2 NH2 NNP cord-267234-waz0k0ms 25 19 terminus terminus NN cord-267234-waz0k0ms 25 20 ; ; : cord-267234-waz0k0ms 25 21 and and CC cord-267234-waz0k0ms 25 22 type type NN cord-267234-waz0k0ms 25 23 II II NNP cord-267234-waz0k0ms 25 24 CLRs clr NNS cord-267234-waz0k0ms 25 25 such such JJ cord-267234-waz0k0ms 25 26 as as IN cord-267234-waz0k0ms 25 27 hepatic hepatic JJ cord-267234-waz0k0ms 25 28 asialoglycoprotein asialoglycoprotein NNP cord-267234-waz0k0ms 25 29 receptors receptor NNS cord-267234-waz0k0ms 25 30 , , , cord-267234-waz0k0ms 25 31 macrophage macrophage NN cord-267234-waz0k0ms 25 32 lectin lectin NN cord-267234-waz0k0ms 25 33 , , , cord-267234-waz0k0ms 25 34 DC DC NNP cord-267234-waz0k0ms 25 35 - - HYPH cord-267234-waz0k0ms 25 36 specific specific JJ cord-267234-waz0k0ms 25 37 ICAM3-grabbing icam3-grabbe VBG cord-267234-waz0k0ms 25 38 nonintegrin nonintegrin NNP cord-267234-waz0k0ms 25 39 ( ( -LRB- cord-267234-waz0k0ms 25 40 DC DC NNP cord-267234-waz0k0ms 25 41 - - HYPH cord-267234-waz0k0ms 25 42 SIGN SIGN NNP cord-267234-waz0k0ms 25 43 ) ) -RRB- cord-267234-waz0k0ms 25 44 , , , cord-267234-waz0k0ms 25 45 Langerin Langerin NNP cord-267234-waz0k0ms 25 46 , , , cord-267234-waz0k0ms 25 47 DC DC NNP cord-267234-waz0k0ms 25 48 - - HYPH cord-267234-waz0k0ms 25 49 associated associate VBN cord-267234-waz0k0ms 25 50 C c NN cord-267234-waz0k0ms 25 51 - - HYPH cord-267234-waz0k0ms 25 52 type type NN cord-267234-waz0k0ms 25 53 lectin lectin NN cord-267234-waz0k0ms 25 54 ( ( -LRB- cord-267234-waz0k0ms 25 55 Dectin-1 Dectin-1 NNP cord-267234-waz0k0ms 25 56 ) ) -RRB- cord-267234-waz0k0ms 25 57 and and CC cord-267234-waz0k0ms 25 58 DC DC NNP cord-267234-waz0k0ms 25 59 immunoreceptor immunoreceptor NNP cord-267234-waz0k0ms 25 60 ( ( -LRB- cord-267234-waz0k0ms 25 61 DCIR DCIR NNP cord-267234-waz0k0ms 25 62 ) ) -RRB- cord-267234-waz0k0ms 25 63 have have VBP cord-267234-waz0k0ms 25 64 a a DT cord-267234-waz0k0ms 25 65 single single JJ cord-267234-waz0k0ms 25 66 CRD crd NN cord-267234-waz0k0ms 25 67 at at IN cord-267234-waz0k0ms 25 68 the the DT cord-267234-waz0k0ms 25 69 COOHterminus coohterminus NN cord-267234-waz0k0ms 25 70 ( ( -LRB- cord-267234-waz0k0ms 25 71 Redelinghuys Redelinghuys NNP cord-267234-waz0k0ms 25 72 and and CC cord-267234-waz0k0ms 25 73 Brown Brown NNP cord-267234-waz0k0ms 25 74 , , , cord-267234-waz0k0ms 25 75 2011 2011 CD cord-267234-waz0k0ms 25 76 ) ) -RRB- cord-267234-waz0k0ms 25 77 . . . cord-267234-waz0k0ms 26 1 Dendritic dendritic JJ cord-267234-waz0k0ms 26 2 cell cell NN cord-267234-waz0k0ms 26 3 - - HYPH cord-267234-waz0k0ms 26 4 specific specific JJ cord-267234-waz0k0ms 26 5 intercellular intercellular JJ cord-267234-waz0k0ms 26 6 adhesion adhesion NN cord-267234-waz0k0ms 26 7 molecule molecule NN cord-267234-waz0k0ms 26 8 3 3 CD cord-267234-waz0k0ms 26 9 grabbing grab VBG cord-267234-waz0k0ms 26 10 non non JJ cord-267234-waz0k0ms 26 11 - - JJ cord-267234-waz0k0ms 26 12 integrin integrin JJ cord-267234-waz0k0ms 26 13 , , , cord-267234-waz0k0ms 26 14 DC DC NNP cord-267234-waz0k0ms 26 15 - - HYPH cord-267234-waz0k0ms 26 16 SIGN SIGN NNP cord-267234-waz0k0ms 26 17 ( ( -LRB- cord-267234-waz0k0ms 26 18 CD209 cd209 NN cord-267234-waz0k0ms 26 19 ) ) -RRB- cord-267234-waz0k0ms 26 20 and and CC cord-267234-waz0k0ms 26 21 its -PRON- PRP$ cord-267234-waz0k0ms 26 22 homolog homolog NN cord-267234-waz0k0ms 26 23 , , , cord-267234-waz0k0ms 26 24 liver liver NN cord-267234-waz0k0ms 26 25 / / SYM cord-267234-waz0k0ms 26 26 lymphnode lymphnode NN cord-267234-waz0k0ms 26 27 - - HYPH cord-267234-waz0k0ms 26 28 specific specific JJ cord-267234-waz0k0ms 26 29 intercellular intercellular JJ cord-267234-waz0k0ms 26 30 adhesion adhesion NN cord-267234-waz0k0ms 26 31 molecule molecule NN cord-267234-waz0k0ms 26 32 3 3 CD cord-267234-waz0k0ms 26 33 grabbing grab VBG cord-267234-waz0k0ms 26 34 non non JJ cord-267234-waz0k0ms 26 35 - - JJ cord-267234-waz0k0ms 26 36 integrin integrin JJ cord-267234-waz0k0ms 26 37 , , , cord-267234-waz0k0ms 26 38 L l NN cord-267234-waz0k0ms 26 39 - - HYPH cord-267234-waz0k0ms 26 40 SIGN SIGN NNP cord-267234-waz0k0ms 26 41 also also RB cord-267234-waz0k0ms 26 42 known know VBN cord-267234-waz0k0ms 26 43 as as IN cord-267234-waz0k0ms 26 44 DC DC NNP cord-267234-waz0k0ms 26 45 - - HYPH cord-267234-waz0k0ms 26 46 SIGN sign NN cord-267234-waz0k0ms 26 47 - - HYPH cord-267234-waz0k0ms 26 48 related relate VBN cord-267234-waz0k0ms 26 49 receptor receptor NN cord-267234-waz0k0ms 26 50 ( ( -LRB- cord-267234-waz0k0ms 26 51 DC DC NNP cord-267234-waz0k0ms 26 52 - - HYPH cord-267234-waz0k0ms 26 53 SIGNR SIGNR NNP cord-267234-waz0k0ms 26 54 ) ) -RRB- cord-267234-waz0k0ms 26 55 , , , cord-267234-waz0k0ms 26 56 are be VBP cord-267234-waz0k0ms 26 57 two two CD cord-267234-waz0k0ms 26 58 kinds kind NNS cord-267234-waz0k0ms 26 59 of of IN cord-267234-waz0k0ms 26 60 the the DT cord-267234-waz0k0ms 26 61 type type NN cord-267234-waz0k0ms 26 62 II II NNP cord-267234-waz0k0ms 26 63 CLRs clr NNS cord-267234-waz0k0ms 26 64 sharing share VBG cord-267234-waz0k0ms 26 65 similar similar JJ cord-267234-waz0k0ms 26 66 structure structure NN cord-267234-waz0k0ms 26 67 and and CC cord-267234-waz0k0ms 26 68 both both DT cord-267234-waz0k0ms 26 69 serve serve VBP cord-267234-waz0k0ms 26 70 as as IN cord-267234-waz0k0ms 26 71 cell cell NN cord-267234-waz0k0ms 26 72 adhesion adhesion NN cord-267234-waz0k0ms 26 73 and and CC cord-267234-waz0k0ms 26 74 phagocytic phagocytic JJ cord-267234-waz0k0ms 26 75 pathogen pathogen NN cord-267234-waz0k0ms 26 76 recognition recognition NN cord-267234-waz0k0ms 26 77 receptors receptor NNS cord-267234-waz0k0ms 26 78 ( ( -LRB- cord-267234-waz0k0ms 27 1 Khoo Khoo NNP cord-267234-waz0k0ms 27 2 et et NNP cord-267234-waz0k0ms 27 3 al al NNP cord-267234-waz0k0ms 27 4 . . NNP cord-267234-waz0k0ms 27 5 , , , cord-267234-waz0k0ms 27 6 2008 2008 CD cord-267234-waz0k0ms 27 7 ) ) -RRB- cord-267234-waz0k0ms 27 8 . . . cord-267234-waz0k0ms 28 1 Characters character NNS cord-267234-waz0k0ms 28 2 and and CC cord-267234-waz0k0ms 28 3 functions function NNS cord-267234-waz0k0ms 28 4 of of IN cord-267234-waz0k0ms 28 5 DC DC NNP cord-267234-waz0k0ms 28 6 - - HYPH cord-267234-waz0k0ms 28 7 SIGN SIGN NNP cord-267234-waz0k0ms 28 8 and and CC cord-267234-waz0k0ms 28 9 L l NN cord-267234-waz0k0ms 28 10 - - HYPH cord-267234-waz0k0ms 28 11 SIGN sign NN cord-267234-waz0k0ms 28 12 in in IN cord-267234-waz0k0ms 28 13 human human NN cord-267234-waz0k0ms 28 14 had have VBD cord-267234-waz0k0ms 28 15 been be VBN cord-267234-waz0k0ms 28 16 studied study VBN cord-267234-waz0k0ms 28 17 , , , cord-267234-waz0k0ms 28 18 that that IN cord-267234-waz0k0ms 28 19 both both DT cord-267234-waz0k0ms 28 20 can can MD cord-267234-waz0k0ms 28 21 bind bind VB cord-267234-waz0k0ms 28 22 various various JJ cord-267234-waz0k0ms 28 23 viruses virus NNS cord-267234-waz0k0ms 28 24 such such JJ cord-267234-waz0k0ms 28 25 as as IN cord-267234-waz0k0ms 28 26 HIV-1 HIV-1 NNP cord-267234-waz0k0ms 28 27 , , , cord-267234-waz0k0ms 28 28 Ebola Ebola NNP cord-267234-waz0k0ms 28 29 virus virus NN cord-267234-waz0k0ms 28 30 , , , cord-267234-waz0k0ms 28 31 cytomegalovirus cytomegalovirus NNP cord-267234-waz0k0ms 28 32 , , , cord-267234-waz0k0ms 28 33 hepatitis hepatitis NN cord-267234-waz0k0ms 28 34 C C NNP cord-267234-waz0k0ms 28 35 virus virus NN cord-267234-waz0k0ms 28 36 , , , cord-267234-waz0k0ms 28 37 Dengue dengue NN cord-267234-waz0k0ms 28 38 virus virus NN cord-267234-waz0k0ms 28 39 , , , cord-267234-waz0k0ms 28 40 and and CC cord-267234-waz0k0ms 28 41 SARS SARS NNP cord-267234-waz0k0ms 28 42 - - HYPH cord-267234-waz0k0ms 28 43 coronavirus coronavirus NN cord-267234-waz0k0ms 28 44 ( ( -LRB- cord-267234-waz0k0ms 28 45 Alvarez Alvarez NNP cord-267234-waz0k0ms 28 46 et et NNP cord-267234-waz0k0ms 28 47 al al NNP cord-267234-waz0k0ms 28 48 . . . cord-267234-waz0k0ms 29 1 , , , cord-267234-waz0k0ms 29 2 2002 2002 CD cord-267234-waz0k0ms 29 3 ; ; : cord-267234-waz0k0ms 29 4 Geijtenbeek Geijtenbeek NNP cord-267234-waz0k0ms 29 5 et et NNP cord-267234-waz0k0ms 29 6 al al NNP cord-267234-waz0k0ms 29 7 . . NNP cord-267234-waz0k0ms 29 8 , , , cord-267234-waz0k0ms 29 9 2000 2000 CD cord-267234-waz0k0ms 29 10 ; ; : cord-267234-waz0k0ms 29 11 Lozach Lozach NNP cord-267234-waz0k0ms 29 12 et et FW cord-267234-waz0k0ms 29 13 al al NNP cord-267234-waz0k0ms 29 14 . . NNP cord-267234-waz0k0ms 29 15 , , , cord-267234-waz0k0ms 29 16 2003 2003 CD cord-267234-waz0k0ms 29 17 ) ) -RRB- cord-267234-waz0k0ms 29 18 . . . cord-267234-waz0k0ms 30 1 Meanwhile meanwhile RB cord-267234-waz0k0ms 30 2 , , , cord-267234-waz0k0ms 30 3 DC DC NNP cord-267234-waz0k0ms 30 4 - - HYPH cord-267234-waz0k0ms 30 5 SIGN SIGN NNP cord-267234-waz0k0ms 30 6 and and CC cord-267234-waz0k0ms 30 7 L l NN cord-267234-waz0k0ms 30 8 - - HYPH cord-267234-waz0k0ms 30 9 SIGN SIGN NNP cord-267234-waz0k0ms 30 10 also also RB cord-267234-waz0k0ms 30 11 have have VBP cord-267234-waz0k0ms 30 12 different different JJ cord-267234-waz0k0ms 30 13 physiological physiological JJ cord-267234-waz0k0ms 30 14 functions function NNS cord-267234-waz0k0ms 30 15 and and CC cord-267234-waz0k0ms 30 16 ligand ligand NN cord-267234-waz0k0ms 30 17 - - HYPH cord-267234-waz0k0ms 30 18 binding bind VBG cord-267234-waz0k0ms 30 19 properties property NNS cord-267234-waz0k0ms 30 20 that that WDT cord-267234-waz0k0ms 30 21 DC DC NNP cord-267234-waz0k0ms 30 22 - - HYPH cord-267234-waz0k0ms 30 23 SIGN SIGN NNP cord-267234-waz0k0ms 30 24 prior prior RB cord-267234-waz0k0ms 30 25 to to IN cord-267234-waz0k0ms 30 26 binding bind VBG cord-267234-waz0k0ms 30 27 to to IN cord-267234-waz0k0ms 30 28 fucose fucose NNP cord-267234-waz0k0ms 30 29 whilst whilst IN cord-267234-waz0k0ms 30 30 L l NN cord-267234-waz0k0ms 30 31 - - HYPH cord-267234-waz0k0ms 30 32 SIGN sign NN cord-267234-waz0k0ms 30 33 to to IN cord-267234-waz0k0ms 30 34 mannose mannose NN cord-267234-waz0k0ms 30 35 to to TO cord-267234-waz0k0ms 30 36 recognize recognize VB cord-267234-waz0k0ms 30 37 different different JJ cord-267234-waz0k0ms 30 38 pathogens pathogen NNS cord-267234-waz0k0ms 31 1 ( ( -LRB- cord-267234-waz0k0ms 31 2 Khoo Khoo NNP cord-267234-waz0k0ms 31 3 et et NNP cord-267234-waz0k0ms 31 4 al al NNP cord-267234-waz0k0ms 31 5 . . NNP cord-267234-waz0k0ms 31 6 , , , cord-267234-waz0k0ms 31 7 2008 2008 CD cord-267234-waz0k0ms 31 8 ) ) -RRB- cord-267234-waz0k0ms 31 9 . . . cord-267234-waz0k0ms 32 1 Differences difference NNS cord-267234-waz0k0ms 32 2 are be VBP cord-267234-waz0k0ms 32 3 also also RB cord-267234-waz0k0ms 32 4 seen see VBN cord-267234-waz0k0ms 32 5 in in IN cord-267234-waz0k0ms 32 6 their -PRON- PRP$ cord-267234-waz0k0ms 32 7 tissue tissue NN cord-267234-waz0k0ms 32 8 distribution distribution NN cord-267234-waz0k0ms 32 9 that that WDT cord-267234-waz0k0ms 32 10 DC DC NNP cord-267234-waz0k0ms 32 11 - - HYPH cord-267234-waz0k0ms 32 12 SIGN SIGN NNP cord-267234-waz0k0ms 32 13 is be VBZ cord-267234-waz0k0ms 32 14 expressed express VBN cord-267234-waz0k0ms 32 15 on on IN cord-267234-waz0k0ms 32 16 dendritic dendritic JJ cord-267234-waz0k0ms 32 17 cells cell NNS cord-267234-waz0k0ms 32 18 and and CC cord-267234-waz0k0ms 32 19 some some DT cord-267234-waz0k0ms 32 20 types type NNS cord-267234-waz0k0ms 32 21 of of IN cord-267234-waz0k0ms 32 22 macrophages macrophage NNS cord-267234-waz0k0ms 32 23 , , , cord-267234-waz0k0ms 32 24 while while IN cord-267234-waz0k0ms 32 25 L l NN cord-267234-waz0k0ms 32 26 - - HYPH cord-267234-waz0k0ms 32 27 SIGN SIGN NNP cord-267234-waz0k0ms 32 28 is be VBZ cord-267234-waz0k0ms 32 29 expressed express VBN cord-267234-waz0k0ms 32 30 on on IN cord-267234-waz0k0ms 32 31 sinusoidal sinusoidal JJ cord-267234-waz0k0ms 32 32 endothelial endothelial JJ cord-267234-waz0k0ms 32 33 cells cell NNS cord-267234-waz0k0ms 32 34 in in IN cord-267234-waz0k0ms 32 35 the the DT cord-267234-waz0k0ms 32 36 liver liver NN cord-267234-waz0k0ms 32 37 , , , cord-267234-waz0k0ms 32 38 lymph lymph NN cord-267234-waz0k0ms 32 39 node node NN cord-267234-waz0k0ms 32 40 sinusoids sinusoid NNS cord-267234-waz0k0ms 32 41 and and CC cord-267234-waz0k0ms 32 42 in in IN cord-267234-waz0k0ms 32 43 the the DT cord-267234-waz0k0ms 32 44 placenta placenta NN cord-267234-waz0k0ms 33 1 ( ( -LRB- cord-267234-waz0k0ms 33 2 Boily Boily NNP cord-267234-waz0k0ms 33 3 - - HYPH cord-267234-waz0k0ms 33 4 Larouche Larouche NNP cord-267234-waz0k0ms 33 5 et et NNP cord-267234-waz0k0ms 33 6 al al NNP cord-267234-waz0k0ms 33 7 . . NNP cord-267234-waz0k0ms 33 8 , , , cord-267234-waz0k0ms 33 9 2007 2007 CD cord-267234-waz0k0ms 33 10 ) ) -RRB- cord-267234-waz0k0ms 33 11 . . . cord-267234-waz0k0ms 34 1 Human human JJ cord-267234-waz0k0ms 34 2 DC DC NNP cord-267234-waz0k0ms 34 3 - - HYPH cord-267234-waz0k0ms 34 4 SIGN SIGN NNP cord-267234-waz0k0ms 34 5 and and CC cord-267234-waz0k0ms 34 6 L l NN cord-267234-waz0k0ms 34 7 - - HYPH cord-267234-waz0k0ms 34 8 SIGN sign NN cord-267234-waz0k0ms 34 9 structures structure NNS cord-267234-waz0k0ms 34 10 are be VBP cord-267234-waz0k0ms 34 11 composed compose VBN cord-267234-waz0k0ms 34 12 of of IN cord-267234-waz0k0ms 34 13 3 3 CD cord-267234-waz0k0ms 34 14 domains domain NNS cord-267234-waz0k0ms 34 15 : : : cord-267234-waz0k0ms 34 16 a a DT cord-267234-waz0k0ms 34 17 transmembrane transmembrane NN cord-267234-waz0k0ms 34 18 domain domain NN cord-267234-waz0k0ms 34 19 , , , cord-267234-waz0k0ms 34 20 CRD CRD NNP cord-267234-waz0k0ms 34 21 and and CC cord-267234-waz0k0ms 34 22 a a DT cord-267234-waz0k0ms 34 23 neck neck NN cord-267234-waz0k0ms 34 24 - - HYPH cord-267234-waz0k0ms 34 25 region region NN cord-267234-waz0k0ms 34 26 which which WDT cord-267234-waz0k0ms 34 27 is be VBZ cord-267234-waz0k0ms 34 28 highly highly RB cord-267234-waz0k0ms 34 29 conserved conserve VBN cord-267234-waz0k0ms 34 30 . . . cord-267234-waz0k0ms 35 1 The the DT cord-267234-waz0k0ms 35 2 two two CD cord-267234-waz0k0ms 35 3 genes gene NNS cord-267234-waz0k0ms 35 4 were be VBD cord-267234-waz0k0ms 35 5 coded code VBN cord-267234-waz0k0ms 35 6 by by IN cord-267234-waz0k0ms 35 7 404 404 CD cord-267234-waz0k0ms 35 8 amino amino JJ cord-267234-waz0k0ms 35 9 acids acid NNS cord-267234-waz0k0ms 35 10 and and CC cord-267234-waz0k0ms 35 11 376 376 CD cord-267234-waz0k0ms 35 12 amino amino NN cord-267234-waz0k0ms 35 13 acids acid NNS cord-267234-waz0k0ms 35 14 separately separately RB cord-267234-waz0k0ms 35 15 sharing share VBG cord-267234-waz0k0ms 35 16 77 77 CD cord-267234-waz0k0ms 35 17 % % NN cord-267234-waz0k0ms 35 18 identical identical JJ cord-267234-waz0k0ms 35 19 at at IN cord-267234-waz0k0ms 35 20 the the DT cord-267234-waz0k0ms 35 21 amino amino NN cord-267234-waz0k0ms 35 22 acid acid NN cord-267234-waz0k0ms 35 23 level level NN cord-267234-waz0k0ms 35 24 ( ( -LRB- cord-267234-waz0k0ms 35 25 Khoo Khoo NNP cord-267234-waz0k0ms 35 26 et et NNP cord-267234-waz0k0ms 35 27 al al NNP cord-267234-waz0k0ms 35 28 . . NNP cord-267234-waz0k0ms 35 29 , , , cord-267234-waz0k0ms 35 30 2008 2008 CD cord-267234-waz0k0ms 35 31 ; ; : cord-267234-waz0k0ms 35 32 Li Li NNP cord-267234-waz0k0ms 35 33 et et NNP cord-267234-waz0k0ms 35 34 al al NNP cord-267234-waz0k0ms 35 35 . . NNP cord-267234-waz0k0ms 35 36 , , , cord-267234-waz0k0ms 35 37 2013 2013 CD cord-267234-waz0k0ms 35 38 ) ) -RRB- cord-267234-waz0k0ms 35 39 . . . cord-267234-waz0k0ms 36 1 The the DT cord-267234-waz0k0ms 36 2 dileucine dileucine NN cord-267234-waz0k0ms 36 3 motif motif NN cord-267234-waz0k0ms 36 4 , , , cord-267234-waz0k0ms 36 5 the the DT cord-267234-waz0k0ms 36 6 tri tri JJ cord-267234-waz0k0ms 36 7 - - JJ cord-267234-waz0k0ms 36 8 acidic acidic JJ cord-267234-waz0k0ms 36 9 cluster cluster NN cord-267234-waz0k0ms 36 10 and and CC cord-267234-waz0k0ms 36 11 an an DT cord-267234-waz0k0ms 36 12 EPN EPN NNP cord-267234-waz0k0ms 36 13 sequence sequence NN cord-267234-waz0k0ms 36 14 motif motif NN cord-267234-waz0k0ms 36 15 are be VBP cord-267234-waz0k0ms 36 16 conserved conserve VBN cord-267234-waz0k0ms 36 17 in in IN cord-267234-waz0k0ms 36 18 both both DT cord-267234-waz0k0ms 36 19 human human JJ cord-267234-waz0k0ms 36 20 DC DC NNP cord-267234-waz0k0ms 36 21 - - HYPH cord-267234-waz0k0ms 36 22 SIGN SIGN NNP cord-267234-waz0k0ms 36 23 and and CC cord-267234-waz0k0ms 36 24 L l NN cord-267234-waz0k0ms 36 25 - - HYPH cord-267234-waz0k0ms 36 26 SIGN sign NN cord-267234-waz0k0ms 37 1 ( ( -LRB- cord-267234-waz0k0ms 37 2 Khoo Khoo NNP cord-267234-waz0k0ms 37 3 et et NNP cord-267234-waz0k0ms 37 4 al al NNP cord-267234-waz0k0ms 37 5 . . NNP cord-267234-waz0k0ms 37 6 , , , cord-267234-waz0k0ms 37 7 2008 2008 CD cord-267234-waz0k0ms 37 8 ) ) -RRB- cord-267234-waz0k0ms 37 9 . . . cord-267234-waz0k0ms 38 1 But but CC cord-267234-waz0k0ms 38 2 the the DT cord-267234-waz0k0ms 38 3 structures structure NNS cord-267234-waz0k0ms 38 4 , , , cord-267234-waz0k0ms 38 5 genomic genomic JJ cord-267234-waz0k0ms 38 6 organizations organization NNS cord-267234-waz0k0ms 38 7 and and CC cord-267234-waz0k0ms 38 8 functional functional JJ cord-267234-waz0k0ms 38 9 motifs motif NNS cord-267234-waz0k0ms 38 10 in in IN cord-267234-waz0k0ms 38 11 teleost teleost NNS cord-267234-waz0k0ms 38 12 are be VBP cord-267234-waz0k0ms 38 13 not not RB cord-267234-waz0k0ms 38 14 very very RB cord-267234-waz0k0ms 38 15 clear clear JJ cord-267234-waz0k0ms 38 16 . . . cord-267234-waz0k0ms 39 1 Until until IN cord-267234-waz0k0ms 39 2 now now RB cord-267234-waz0k0ms 39 3 , , , cord-267234-waz0k0ms 39 4 there there EX cord-267234-waz0k0ms 39 5 have have VBP cord-267234-waz0k0ms 39 6 been be VBN cord-267234-waz0k0ms 39 7 almost almost RB cord-267234-waz0k0ms 39 8 no no DT cord-267234-waz0k0ms 39 9 studies study NNS cord-267234-waz0k0ms 39 10 of of IN cord-267234-waz0k0ms 39 11 DC DC NNP cord-267234-waz0k0ms 39 12 - - HYPH cord-267234-waz0k0ms 39 13 SIGN SIGN NNP cord-267234-waz0k0ms 39 14 and and CC cord-267234-waz0k0ms 39 15 L l NN cord-267234-waz0k0ms 39 16 - - HYPH cord-267234-waz0k0ms 39 17 SIGN sign NN cord-267234-waz0k0ms 39 18 structure structure NN cord-267234-waz0k0ms 39 19 and and CC cord-267234-waz0k0ms 39 20 characters character NNS cord-267234-waz0k0ms 39 21 in in IN cord-267234-waz0k0ms 39 22 teleost teleost NN cord-267234-waz0k0ms 39 23 ; ; : cord-267234-waz0k0ms 39 24 only only RB cord-267234-waz0k0ms 39 25 DC DC NNP cord-267234-waz0k0ms 39 26 - - HYPH cord-267234-waz0k0ms 39 27 SIGN sign NN cord-267234-waz0k0ms 39 28 in in IN cord-267234-waz0k0ms 39 29 the the DT cord-267234-waz0k0ms 39 30 zebrafish zebrafish NN cord-267234-waz0k0ms 39 31 had have VBD cord-267234-waz0k0ms 39 32 been be VBN cord-267234-waz0k0ms 39 33 studied study VBN cord-267234-waz0k0ms 39 34 which which WDT cord-267234-waz0k0ms 39 35 showed show VBD cord-267234-waz0k0ms 39 36 that that IN cord-267234-waz0k0ms 39 37 DC DC NNP cord-267234-waz0k0ms 39 38 - - HYPH cord-267234-waz0k0ms 39 39 SIGN SIGN NNP cord-267234-waz0k0ms 39 40 in in IN cord-267234-waz0k0ms 39 41 zebrafish zebrafish NN cord-267234-waz0k0ms 39 42 has have VBZ cord-267234-waz0k0ms 39 43 conserved conserve VBN cord-267234-waz0k0ms 39 44 domains domain NNS cord-267234-waz0k0ms 39 45 with with IN cord-267234-waz0k0ms 39 46 other other JJ cord-267234-waz0k0ms 39 47 vertebrates vertebrate NNS cord-267234-waz0k0ms 39 48 and and CC cord-267234-waz0k0ms 39 49 plays play VBZ cord-267234-waz0k0ms 39 50 a a DT cord-267234-waz0k0ms 39 51 crucial crucial JJ cord-267234-waz0k0ms 39 52 role role NN cord-267234-waz0k0ms 39 53 for for IN cord-267234-waz0k0ms 39 54 the the DT cord-267234-waz0k0ms 39 55 initiation initiation NN cord-267234-waz0k0ms 39 56 and and CC cord-267234-waz0k0ms 39 57 development development NN cord-267234-waz0k0ms 39 58 of of IN cord-267234-waz0k0ms 39 59 adaptive adaptive JJ cord-267234-waz0k0ms 39 60 immunity immunity NN cord-267234-waz0k0ms 39 61 in in IN cord-267234-waz0k0ms 39 62 zebrafish zebrafish NN cord-267234-waz0k0ms 39 63 ( ( -LRB- cord-267234-waz0k0ms 39 64 Lin Lin NNP cord-267234-waz0k0ms 39 65 et et NNP cord-267234-waz0k0ms 39 66 al al NNP cord-267234-waz0k0ms 39 67 . . NNP cord-267234-waz0k0ms 39 68 , , , cord-267234-waz0k0ms 39 69 2009 2009 CD cord-267234-waz0k0ms 39 70 ) ) -RRB- cord-267234-waz0k0ms 39 71 . . . cord-267234-waz0k0ms 40 1 In in IN cord-267234-waz0k0ms 40 2 this this DT cord-267234-waz0k0ms 40 3 study study NN cord-267234-waz0k0ms 40 4 , , , cord-267234-waz0k0ms 40 5 we -PRON- PRP cord-267234-waz0k0ms 40 6 analyzed analyze VBD cord-267234-waz0k0ms 40 7 genomic genomic JJ cord-267234-waz0k0ms 40 8 organizations organization NNS cord-267234-waz0k0ms 40 9 , , , cord-267234-waz0k0ms 40 10 gene gene NN cord-267234-waz0k0ms 40 11 structures structure NNS cord-267234-waz0k0ms 40 12 , , , cord-267234-waz0k0ms 40 13 and and CC cord-267234-waz0k0ms 40 14 synteny synteny NNP cord-267234-waz0k0ms 40 15 , , , cord-267234-waz0k0ms 40 16 evolutionary evolutionary JJ cord-267234-waz0k0ms 40 17 process process NN cord-267234-waz0k0ms 40 18 and and CC cord-267234-waz0k0ms 40 19 expression expression NN cord-267234-waz0k0ms 40 20 of of IN cord-267234-waz0k0ms 40 21 miiuy miiuy NNP cord-267234-waz0k0ms 40 22 croaker croaker NN cord-267234-waz0k0ms 40 23 DC DC NNP cord-267234-waz0k0ms 40 24 - - HYPH cord-267234-waz0k0ms 40 25 SIGN sign NN cord-267234-waz0k0ms 40 26 ( ( -LRB- cord-267234-waz0k0ms 40 27 mmDC mmdc NN cord-267234-waz0k0ms 40 28 - - HYPH cord-267234-waz0k0ms 40 29 SIGN sign NN cord-267234-waz0k0ms 40 30 ) ) -RRB- cord-267234-waz0k0ms 40 31 and and CC cord-267234-waz0k0ms 40 32 L l NN cord-267234-waz0k0ms 40 33 - - HYPH cord-267234-waz0k0ms 40 34 SIGN sign NN cord-267234-waz0k0ms 40 35 ( ( -LRB- cord-267234-waz0k0ms 40 36 mmL mmL NNP cord-267234-waz0k0ms 40 37 - - HYPH cord-267234-waz0k0ms 40 38 SIGN sign NN cord-267234-waz0k0ms 40 39 ) ) -RRB- cord-267234-waz0k0ms 40 40 . . . cord-267234-waz0k0ms 41 1 We -PRON- PRP cord-267234-waz0k0ms 41 2 are be VBP cord-267234-waz0k0ms 41 3 the the DT cord-267234-waz0k0ms 41 4 first first JJ cord-267234-waz0k0ms 41 5 to to TO cord-267234-waz0k0ms 41 6 comprehensively comprehensively RB cord-267234-waz0k0ms 41 7 analyze analyze VB cord-267234-waz0k0ms 41 8 L l NN cord-267234-waz0k0ms 41 9 - - HYPH cord-267234-waz0k0ms 41 10 SIGN sign NN cord-267234-waz0k0ms 41 11 in in IN cord-267234-waz0k0ms 41 12 fish fish NN cord-267234-waz0k0ms 41 13 and and CC cord-267234-waz0k0ms 41 14 gene gene NN cord-267234-waz0k0ms 41 15 synteny synteny NN cord-267234-waz0k0ms 41 16 on on IN cord-267234-waz0k0ms 41 17 genomic genomic JJ cord-267234-waz0k0ms 41 18 level level NN cord-267234-waz0k0ms 41 19 of of IN cord-267234-waz0k0ms 41 20 DC DC NNP cord-267234-waz0k0ms 41 21 - - HYPH cord-267234-waz0k0ms 41 22 SIGN SIGN NNP cord-267234-waz0k0ms 41 23 and and CC cord-267234-waz0k0ms 41 24 L l NN cord-267234-waz0k0ms 41 25 - - HYPH cord-267234-waz0k0ms 41 26 SIGN sign NN cord-267234-waz0k0ms 41 27 in in IN cord-267234-waz0k0ms 41 28 teleost teleost NN cord-267234-waz0k0ms 41 29 . . . cord-267234-waz0k0ms 42 1 To to TO cord-267234-waz0k0ms 42 2 obtain obtain VB cord-267234-waz0k0ms 42 3 the the DT cord-267234-waz0k0ms 42 4 DC DC NNP cord-267234-waz0k0ms 42 5 - - HYPH cord-267234-waz0k0ms 42 6 SIGN SIGN NNP cord-267234-waz0k0ms 42 7 and and CC cord-267234-waz0k0ms 42 8 L l NN cord-267234-waz0k0ms 42 9 - - HYPH cord-267234-waz0k0ms 42 10 SIGN sign NN cord-267234-waz0k0ms 42 11 from from IN cord-267234-waz0k0ms 42 12 miiuy miiuy NNP cord-267234-waz0k0ms 42 13 croaker croaker NNP cord-267234-waz0k0ms 42 14 , , , cord-267234-waz0k0ms 42 15 the the DT cord-267234-waz0k0ms 42 16 BLASTP BLASTP NNP cord-267234-waz0k0ms 42 17 and and CC cord-267234-waz0k0ms 42 18 TBLASTN TBLASTN NNP cord-267234-waz0k0ms 42 19 programs program NNS cord-267234-waz0k0ms 42 20 with with IN cord-267234-waz0k0ms 42 21 a a DT cord-267234-waz0k0ms 42 22 query query NN cord-267234-waz0k0ms 42 23 set set VBN cord-267234-waz0k0ms 42 24 of of IN cord-267234-waz0k0ms 42 25 the the DT cord-267234-waz0k0ms 42 26 previously previously RB cord-267234-waz0k0ms 42 27 characterized characterize VBN cord-267234-waz0k0ms 42 28 DC DC NNP cord-267234-waz0k0ms 42 29 - - HYPH cord-267234-waz0k0ms 42 30 SIGN SIGN NNP cord-267234-waz0k0ms 42 31 and and CC cord-267234-waz0k0ms 42 32 L l NN cord-267234-waz0k0ms 42 33 - - HYPH cord-267234-waz0k0ms 42 34 SIGN SIGN NNP cord-267234-waz0k0ms 42 35 were be VBD cord-267234-waz0k0ms 42 36 used use VBN cord-267234-waz0k0ms 42 37 to to TO cord-267234-waz0k0ms 42 38 search search VB cord-267234-waz0k0ms 42 39 the the DT cord-267234-waz0k0ms 42 40 miiuy miiuy NNP cord-267234-waz0k0ms 42 41 croaker croaker NNP cord-267234-waz0k0ms 42 42 transcriptome transcriptome NNP cord-267234-waz0k0ms 43 1 ( ( -LRB- cord-267234-waz0k0ms 43 2 Che Che NNP cord-267234-waz0k0ms 43 3 et et FW cord-267234-waz0k0ms 43 4 al al NNP cord-267234-waz0k0ms 43 5 . . NNP cord-267234-waz0k0ms 43 6 , , , cord-267234-waz0k0ms 43 7 2014 2014 CD cord-267234-waz0k0ms 43 8 ) ) -RRB- cord-267234-waz0k0ms 43 9 and and CC cord-267234-waz0k0ms 43 10 whole whole JJ cord-267234-waz0k0ms 43 11 genome genome NN cord-267234-waz0k0ms 43 12 database database NN cord-267234-waz0k0ms 43 13 ( ( -LRB- cord-267234-waz0k0ms 43 14 unpublished unpublished JJ cord-267234-waz0k0ms 43 15 data datum NNS cord-267234-waz0k0ms 43 16 ) ) -RRB- cord-267234-waz0k0ms 43 17 . . . cord-267234-waz0k0ms 44 1 Two two CD cord-267234-waz0k0ms 44 2 corresponding correspond VBG cord-267234-waz0k0ms 44 3 scaffolds scaffold NNS cord-267234-waz0k0ms 44 4 were be VBD cord-267234-waz0k0ms 44 5 identified identify VBN cord-267234-waz0k0ms 44 6 which which WDT cord-267234-waz0k0ms 44 7 have have VBP cord-267234-waz0k0ms 44 8 a a DT cord-267234-waz0k0ms 44 9 strong strong JJ cord-267234-waz0k0ms 44 10 identity identity NN cord-267234-waz0k0ms 44 11 with with IN cord-267234-waz0k0ms 44 12 sequences sequence NNS cord-267234-waz0k0ms 44 13 previously previously RB cord-267234-waz0k0ms 44 14 accepted accept VBN cord-267234-waz0k0ms 44 15 as as IN cord-267234-waz0k0ms 44 16 DC DC NNP cord-267234-waz0k0ms 44 17 - - HYPH cord-267234-waz0k0ms 44 18 SIGN SIGN NNP cord-267234-waz0k0ms 44 19 and and CC cord-267234-waz0k0ms 44 20 L l NN cord-267234-waz0k0ms 44 21 - - HYPH cord-267234-waz0k0ms 44 22 SIGN sign VB cord-267234-waz0k0ms 44 23 respectively respectively RB cord-267234-waz0k0ms 44 24 . . . cord-267234-waz0k0ms 45 1 Miiuy Miiuy NNP cord-267234-waz0k0ms 45 2 croaker croaker NN cord-267234-waz0k0ms 45 3 DC DC NNP cord-267234-waz0k0ms 45 4 - - HYPH cord-267234-waz0k0ms 45 5 SIGN SIGN NNP cord-267234-waz0k0ms 45 6 and and CC cord-267234-waz0k0ms 45 7 L l NN cord-267234-waz0k0ms 45 8 - - HYPH cord-267234-waz0k0ms 45 9 SIGN sign NN cord-267234-waz0k0ms 45 10 have have VBP cord-267234-waz0k0ms 45 11 been be VBN cord-267234-waz0k0ms 45 12 identified identify VBN cord-267234-waz0k0ms 45 13 and and CC cord-267234-waz0k0ms 45 14 the the DT cord-267234-waz0k0ms 45 15 nucleotide nucleotide JJ cord-267234-waz0k0ms 45 16 sequences sequence NNS cord-267234-waz0k0ms 45 17 have have VBP cord-267234-waz0k0ms 45 18 been be VBN cord-267234-waz0k0ms 45 19 deposited deposit VBN cord-267234-waz0k0ms 45 20 in in IN cord-267234-waz0k0ms 45 21 GenBank GenBank NNP cord-267234-waz0k0ms 45 22 database database NN cord-267234-waz0k0ms 45 23 under under IN cord-267234-waz0k0ms 45 24 the the DT cord-267234-waz0k0ms 45 25 accession accession NN cord-267234-waz0k0ms 45 26 numbers number NNS cord-267234-waz0k0ms 45 27 KM884829 KM884829 NNP cord-267234-waz0k0ms 45 28 and and CC cord-267234-waz0k0ms 45 29 KM884828 KM884828 NNP cord-267234-waz0k0ms 45 30 . . . cord-267234-waz0k0ms 46 1 The the DT cord-267234-waz0k0ms 46 2 ORF ORF NNP cord-267234-waz0k0ms 46 3 of of IN cord-267234-waz0k0ms 46 4 mmDC mmdc NN cord-267234-waz0k0ms 46 5 - - HYPH cord-267234-waz0k0ms 46 6 SIGN sign NN cord-267234-waz0k0ms 46 7 and and CC cord-267234-waz0k0ms 46 8 mmL mml NN cord-267234-waz0k0ms 46 9 - - HYPH cord-267234-waz0k0ms 46 10 SIGN sign NN cord-267234-waz0k0ms 46 11 were be VBD cord-267234-waz0k0ms 46 12 predicted predict VBN cord-267234-waz0k0ms 46 13 using use VBG cord-267234-waz0k0ms 46 14 the the DT cord-267234-waz0k0ms 46 15 Open Open NNP cord-267234-waz0k0ms 46 16 Reading Reading NNP cord-267234-waz0k0ms 46 17 Frame Frame NNP cord-267234-waz0k0ms 46 18 Finder Finder NNP cord-267234-waz0k0ms 46 19 ( ( -LRB- cord-267234-waz0k0ms 46 20 http://www.ncbi.nlm.nih.gov/gorf/ http://www.ncbi.nlm.nih.gov/gorf/ NNP cord-267234-waz0k0ms 46 21 gorf.html gorf.html NNP cord-267234-waz0k0ms 46 22 ) ) -RRB- cord-267234-waz0k0ms 46 23 and and CC cord-267234-waz0k0ms 46 24 GENSCAN GENSCAN NNP cord-267234-waz0k0ms 46 25 ( ( -LRB- cord-267234-waz0k0ms 46 26 Burge Burge NNP cord-267234-waz0k0ms 46 27 and and CC cord-267234-waz0k0ms 46 28 Karlin Karlin NNP cord-267234-waz0k0ms 46 29 , , , cord-267234-waz0k0ms 46 30 1997 1997 CD cord-267234-waz0k0ms 46 31 ) ) -RRB- cord-267234-waz0k0ms 46 32 . . . cord-267234-waz0k0ms 47 1 The the DT cord-267234-waz0k0ms 47 2 potential potential JJ cord-267234-waz0k0ms 47 3 protein protein NN cord-267234-waz0k0ms 47 4 domains domain NNS cord-267234-waz0k0ms 47 5 were be VBD cord-267234-waz0k0ms 47 6 characterized characterize VBN cord-267234-waz0k0ms 47 7 by by IN cord-267234-waz0k0ms 47 8 the the DT cord-267234-waz0k0ms 47 9 SMART smart JJ cord-267234-waz0k0ms 47 10 program program NN cord-267234-waz0k0ms 47 11 ( ( -LRB- cord-267234-waz0k0ms 47 12 Letunic Letunic NNP cord-267234-waz0k0ms 47 13 et et NNP cord-267234-waz0k0ms 47 14 al al NNP cord-267234-waz0k0ms 47 15 . . NNP cord-267234-waz0k0ms 47 16 , , , cord-267234-waz0k0ms 47 17 2006 2006 CD cord-267234-waz0k0ms 47 18 ) ) -RRB- cord-267234-waz0k0ms 47 19 . . . cord-267234-waz0k0ms 48 1 All all PDT cord-267234-waz0k0ms 48 2 the the DT cord-267234-waz0k0ms 48 3 other other JJ cord-267234-waz0k0ms 48 4 species species NN cord-267234-waz0k0ms 48 5 DC DC NNP cord-267234-waz0k0ms 48 6 - - HYPH cord-267234-waz0k0ms 48 7 SIGN SIGN NNP cord-267234-waz0k0ms 48 8 and and CC cord-267234-waz0k0ms 48 9 L L NNP cord-267234-waz0k0ms 48 10 - - HYPH cord-267234-waz0k0ms 48 11 SIGN sign NN cord-267234-waz0k0ms 48 12 cDNA cdna NN cord-267234-waz0k0ms 48 13 sequences sequence NNS cord-267234-waz0k0ms 48 14 were be VBD cord-267234-waz0k0ms 48 15 obtained obtain VBN cord-267234-waz0k0ms 48 16 from from IN cord-267234-waz0k0ms 48 17 the the DT cord-267234-waz0k0ms 48 18 GenBank GenBank NNP cord-267234-waz0k0ms 48 19 ( ( -LRB- cord-267234-waz0k0ms 48 20 http:// http:// NNP cord-267234-waz0k0ms 48 21 www.ncbi.nlm.nih.gov/Genbank/ www.ncbi.nlm.nih.gov/Genbank/ NNP cord-267234-waz0k0ms 48 22 ) ) -RRB- cord-267234-waz0k0ms 48 23 and and CC cord-267234-waz0k0ms 48 24 Ensemble Ensemble NNP cord-267234-waz0k0ms 48 25 Genome Genome NNP cord-267234-waz0k0ms 48 26 Browser Browser NNP cord-267234-waz0k0ms 48 27 ( ( -LRB- cord-267234-waz0k0ms 48 28 http://www.ensembl.org/ http://www.ensembl.org/ NN cord-267234-waz0k0ms 48 29 ) ) -RRB- cord-267234-waz0k0ms 48 30 databases database NNS cord-267234-waz0k0ms 48 31 ( ( -LRB- cord-267234-waz0k0ms 48 32 Supplementary supplementary JJ cord-267234-waz0k0ms 48 33 Table Table NNP cord-267234-waz0k0ms 48 34 S3 S3 NNP cord-267234-waz0k0ms 48 35 ) ) -RRB- cord-267234-waz0k0ms 48 36 . . . cord-267234-waz0k0ms 49 1 MEGA MEGA NNP cord-267234-waz0k0ms 49 2 5 5 CD cord-267234-waz0k0ms 49 3 software software NN cord-267234-waz0k0ms 49 4 ( ( -LRB- cord-267234-waz0k0ms 49 5 Tamura Tamura NNP cord-267234-waz0k0ms 49 6 et et NNP cord-267234-waz0k0ms 49 7 al al NNP cord-267234-waz0k0ms 49 8 . . NNP cord-267234-waz0k0ms 49 9 , , , cord-267234-waz0k0ms 49 10 2011 2011 CD cord-267234-waz0k0ms 49 11 ) ) -RRB- cord-267234-waz0k0ms 49 12 and and CC cord-267234-waz0k0ms 49 13 DNAman DNAman NNP cord-267234-waz0k0ms 49 14 were be VBD cord-267234-waz0k0ms 49 15 used use VBN cord-267234-waz0k0ms 49 16 for for IN cord-267234-waz0k0ms 49 17 the the DT cord-267234-waz0k0ms 49 18 multiple multiple JJ cord-267234-waz0k0ms 49 19 alignment alignment NN cord-267234-waz0k0ms 49 20 and and CC cord-267234-waz0k0ms 49 21 DNAstar DNAstar NNP cord-267234-waz0k0ms 49 22 was be VBD cord-267234-waz0k0ms 49 23 used use VBN cord-267234-waz0k0ms 49 24 to to TO cord-267234-waz0k0ms 49 25 gain gain VB cord-267234-waz0k0ms 49 26 the the DT cord-267234-waz0k0ms 49 27 divergence divergence NN cord-267234-waz0k0ms 49 28 and and CC cord-267234-waz0k0ms 49 29 percent percent NN cord-267234-waz0k0ms 49 30 identity identity NN cord-267234-waz0k0ms 49 31 values value NNS cord-267234-waz0k0ms 49 32 of of IN cord-267234-waz0k0ms 49 33 all all PDT cord-267234-waz0k0ms 49 34 the the DT cord-267234-waz0k0ms 49 35 known know VBN cord-267234-waz0k0ms 49 36 DC DC NNP cord-267234-waz0k0ms 49 37 - - HYPH cord-267234-waz0k0ms 49 38 SIGN SIGN NNP cord-267234-waz0k0ms 49 39 and and CC cord-267234-waz0k0ms 49 40 L l NN cord-267234-waz0k0ms 49 41 - - HYPH cord-267234-waz0k0ms 49 42 SIGN sign NN cord-267234-waz0k0ms 49 43 amino amino NN cord-267234-waz0k0ms 49 44 acid acid NN cord-267234-waz0k0ms 49 45 sequences sequence NNS cord-267234-waz0k0ms 49 46 ( ( -LRB- cord-267234-waz0k0ms 49 47 Thompson Thompson NNP cord-267234-waz0k0ms 49 48 et et NNP cord-267234-waz0k0ms 49 49 al al NNP cord-267234-waz0k0ms 49 50 . . NNP cord-267234-waz0k0ms 49 51 , , , cord-267234-waz0k0ms 49 52 1994 1994 CD cord-267234-waz0k0ms 49 53 ) ) -RRB- cord-267234-waz0k0ms 49 54 . . . cord-267234-waz0k0ms 50 1 A a DT cord-267234-waz0k0ms 50 2 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 50 3 tree tree NN cord-267234-waz0k0ms 50 4 of of IN cord-267234-waz0k0ms 50 5 several several JJ cord-267234-waz0k0ms 50 6 kinds kind NNS cord-267234-waz0k0ms 50 7 CLRs clr NNS cord-267234-waz0k0ms 50 8 ( ( -LRB- cord-267234-waz0k0ms 50 9 CD23 CD23 NNP cord-267234-waz0k0ms 50 10 , , , cord-267234-waz0k0ms 50 11 CLEC4 clec4 NN cord-267234-waz0k0ms 50 12 G G NNP cord-267234-waz0k0ms 50 13 , , , cord-267234-waz0k0ms 50 14 CD207 CD207 NNP cord-267234-waz0k0ms 50 15 , , , cord-267234-waz0k0ms 50 16 ASGR1 ASGR1 NNP cord-267234-waz0k0ms 50 17 , , , cord-267234-waz0k0ms 50 18 CD205 cd205 JJ cord-267234-waz0k0ms 50 19 , , , cord-267234-waz0k0ms 50 20 DC DC NNP cord-267234-waz0k0ms 50 21 - - HYPH cord-267234-waz0k0ms 50 22 SIGN SIGN NNP cord-267234-waz0k0ms 50 23 , , , cord-267234-waz0k0ms 50 24 L l NN cord-267234-waz0k0ms 50 25 - - HYPH cord-267234-waz0k0ms 50 26 SIGN SIGN NNP cord-267234-waz0k0ms 50 27 and and CC cord-267234-waz0k0ms 50 28 L l NN cord-267234-waz0k0ms 50 29 - - HYPH cord-267234-waz0k0ms 50 30 SIGN sign NN cord-267234-waz0k0ms 50 31 - - HYPH cord-267234-waz0k0ms 50 32 like like JJ cord-267234-waz0k0ms 50 33 ) ) -RRB- cord-267234-waz0k0ms 50 34 was be VBD cord-267234-waz0k0ms 50 35 constructed construct VBN cord-267234-waz0k0ms 50 36 by by IN cord-267234-waz0k0ms 50 37 the the DT cord-267234-waz0k0ms 50 38 neighbor neighbor NN cord-267234-waz0k0ms 50 39 - - HYPH cord-267234-waz0k0ms 50 40 joining join VBG cord-267234-waz0k0ms 50 41 ( ( -LRB- cord-267234-waz0k0ms 50 42 NJ NJ NNP cord-267234-waz0k0ms 50 43 ) ) -RRB- cord-267234-waz0k0ms 50 44 method method NN cord-267234-waz0k0ms 50 45 with with IN cord-267234-waz0k0ms 50 46 bootstrapped bootstrappe VBN cord-267234-waz0k0ms 50 47 1000 1000 CD cord-267234-waz0k0ms 50 48 times time NNS cord-267234-waz0k0ms 50 49 using use VBG cord-267234-waz0k0ms 50 50 the the DT cord-267234-waz0k0ms 50 51 Poisson Poisson NNP cord-267234-waz0k0ms 50 52 model model NN cord-267234-waz0k0ms 50 53 in in IN cord-267234-waz0k0ms 50 54 the the DT cord-267234-waz0k0ms 50 55 MEGA5 MEGA5 NNP cord-267234-waz0k0ms 50 56 program program NN cord-267234-waz0k0ms 50 57 . . . cord-267234-waz0k0ms 51 1 While while IN cord-267234-waz0k0ms 51 2 another another DT cord-267234-waz0k0ms 51 3 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 51 4 tree tree NN cord-267234-waz0k0ms 51 5 of of IN cord-267234-waz0k0ms 51 6 all all PDT cord-267234-waz0k0ms 51 7 the the DT cord-267234-waz0k0ms 51 8 known know VBN cord-267234-waz0k0ms 51 9 L l NN cord-267234-waz0k0ms 51 10 - - HYPH cord-267234-waz0k0ms 51 11 SIGN sign NN cord-267234-waz0k0ms 51 12 sequences sequence NNS cord-267234-waz0k0ms 51 13 was be VBD cord-267234-waz0k0ms 51 14 established establish VBN cord-267234-waz0k0ms 51 15 via via IN cord-267234-waz0k0ms 51 16 the the DT cord-267234-waz0k0ms 51 17 Bayesian bayesian JJ cord-267234-waz0k0ms 51 18 approach approach NN cord-267234-waz0k0ms 51 19 using use VBG cord-267234-waz0k0ms 51 20 MrBayes MrBayes NNP cord-267234-waz0k0ms 51 21 v3.2 v3.2 NN cord-267234-waz0k0ms 51 22 which which WDT cord-267234-waz0k0ms 51 23 is be VBZ cord-267234-waz0k0ms 51 24 running run VBG cord-267234-waz0k0ms 51 25 5,000,000 5,000,000 CD cord-267234-waz0k0ms 51 26 generation generation NN cord-267234-waz0k0ms 51 27 with with IN cord-267234-waz0k0ms 51 28 25 25 CD cord-267234-waz0k0ms 51 29 % % NN cord-267234-waz0k0ms 51 30 of of IN cord-267234-waz0k0ms 51 31 trees tree NNS cord-267234-waz0k0ms 51 32 burned burn VBN cord-267234-waz0k0ms 51 33 ( ( -LRB- cord-267234-waz0k0ms 51 34 Ronquist Ronquist NNP cord-267234-waz0k0ms 51 35 and and CC cord-267234-waz0k0ms 51 36 Huelsenbeck Huelsenbeck NNP cord-267234-waz0k0ms 51 37 , , , cord-267234-waz0k0ms 51 38 2003 2003 CD cord-267234-waz0k0ms 51 39 ) ) -RRB- cord-267234-waz0k0ms 51 40 and and CC cord-267234-waz0k0ms 51 41 the the DT cord-267234-waz0k0ms 51 42 resulting result VBG cord-267234-waz0k0ms 51 43 tree tree NN cord-267234-waz0k0ms 51 44 was be VBD cord-267234-waz0k0ms 51 45 visualized visualize VBN cord-267234-waz0k0ms 51 46 and and CC cord-267234-waz0k0ms 51 47 edited edit VBN cord-267234-waz0k0ms 51 48 by by IN cord-267234-waz0k0ms 51 49 TreeView TreeView NNP cord-267234-waz0k0ms 51 50 ( ( -LRB- cord-267234-waz0k0ms 51 51 Page Page NNP cord-267234-waz0k0ms 51 52 , , , cord-267234-waz0k0ms 51 53 1996 1996 CD cord-267234-waz0k0ms 51 54 ) ) -RRB- cord-267234-waz0k0ms 51 55 . . . cord-267234-waz0k0ms 52 1 The the DT cord-267234-waz0k0ms 52 2 neighboring neighbor VBG cord-267234-waz0k0ms 52 3 genes gene NNS cord-267234-waz0k0ms 52 4 of of IN cord-267234-waz0k0ms 52 5 mmDC mmdc NN cord-267234-waz0k0ms 52 6 - - HYPH cord-267234-waz0k0ms 52 7 SIGN sign NN cord-267234-waz0k0ms 52 8 and and CC cord-267234-waz0k0ms 52 9 mmL mml NN cord-267234-waz0k0ms 52 10 - - HYPH cord-267234-waz0k0ms 52 11 SIGN sign NN cord-267234-waz0k0ms 52 12 were be VBD cord-267234-waz0k0ms 52 13 confirmed confirm VBN cord-267234-waz0k0ms 52 14 in in IN cord-267234-waz0k0ms 52 15 genomic genomic JJ cord-267234-waz0k0ms 52 16 regions region NNS cord-267234-waz0k0ms 52 17 by by IN cord-267234-waz0k0ms 52 18 BLAST blast NN cord-267234-waz0k0ms 52 19 programs program NNS cord-267234-waz0k0ms 52 20 and and CC cord-267234-waz0k0ms 52 21 the the DT cord-267234-waz0k0ms 52 22 neighboring neighbor VBG cord-267234-waz0k0ms 52 23 genes gene NNS cord-267234-waz0k0ms 52 24 locations location NNS cord-267234-waz0k0ms 52 25 of of IN cord-267234-waz0k0ms 52 26 L l NN cord-267234-waz0k0ms 52 27 - - HYPH cord-267234-waz0k0ms 52 28 SIGN sign NN cord-267234-waz0k0ms 52 29 in in IN cord-267234-waz0k0ms 52 30 other other JJ cord-267234-waz0k0ms 52 31 fishes fish NNS cord-267234-waz0k0ms 52 32 were be VBD cord-267234-waz0k0ms 52 33 confirmed confirm VBN cord-267234-waz0k0ms 52 34 by by IN cord-267234-waz0k0ms 52 35 Genomicus Genomicus NNP cord-267234-waz0k0ms 52 36 ( ( -LRB- cord-267234-waz0k0ms 52 37 Muffato Muffato NNP cord-267234-waz0k0ms 52 38 et et NNP cord-267234-waz0k0ms 52 39 al al NNP cord-267234-waz0k0ms 52 40 . . NNP cord-267234-waz0k0ms 52 41 , , , cord-267234-waz0k0ms 52 42 2010 2010 CD cord-267234-waz0k0ms 52 43 ) ) -RRB- cord-267234-waz0k0ms 52 44 . . . cord-267234-waz0k0ms 53 1 The the DT cord-267234-waz0k0ms 53 2 nonsynonymous nonsynonymous JJ cord-267234-waz0k0ms 53 3 and and CC cord-267234-waz0k0ms 53 4 synonymous synonymous JJ cord-267234-waz0k0ms 53 5 rate rate NN cord-267234-waz0k0ms 53 6 ratio ratio NN cord-267234-waz0k0ms 53 7 ω ω NN cord-267234-waz0k0ms 53 8 ( ( -LRB- cord-267234-waz0k0ms 53 9 dN dN NNP cord-267234-waz0k0ms 53 10 / / SYM cord-267234-waz0k0ms 53 11 dS dS NNP cord-267234-waz0k0ms 53 12 ) ) -RRB- cord-267234-waz0k0ms 53 13 stands stand VBZ cord-267234-waz0k0ms 53 14 for for IN cord-267234-waz0k0ms 53 15 the the DT cord-267234-waz0k0ms 53 16 change change NN cord-267234-waz0k0ms 53 17 of of IN cord-267234-waz0k0ms 53 18 selective selective JJ cord-267234-waz0k0ms 53 19 pressures pressure NNS cord-267234-waz0k0ms 53 20 . . . cord-267234-waz0k0ms 54 1 In in IN cord-267234-waz0k0ms 54 2 short short JJ cord-267234-waz0k0ms 54 3 , , , cord-267234-waz0k0ms 54 4 ω ω NN cord-267234-waz0k0ms 54 5 = = SYM cord-267234-waz0k0ms 54 6 1 1 CD cord-267234-waz0k0ms 54 7 , , , cord-267234-waz0k0ms 54 8 < < NNP cord-267234-waz0k0ms 54 9 1 1 CD cord-267234-waz0k0ms 54 10 , , , cord-267234-waz0k0ms 54 11 and and CC cord-267234-waz0k0ms 54 12 > > XX cord-267234-waz0k0ms 54 13 1 1 CD cord-267234-waz0k0ms 54 14 were be VBD cord-267234-waz0k0ms 54 15 indicative indicative JJ cord-267234-waz0k0ms 54 16 of of IN cord-267234-waz0k0ms 54 17 neutral neutral JJ cord-267234-waz0k0ms 54 18 evolution evolution NN cord-267234-waz0k0ms 54 19 , , , cord-267234-waz0k0ms 54 20 purifying purify VBG cord-267234-waz0k0ms 54 21 selection selection NN cord-267234-waz0k0ms 54 22 and and CC cord-267234-waz0k0ms 54 23 positive positive JJ cord-267234-waz0k0ms 54 24 selection selection NN cord-267234-waz0k0ms 54 25 . . . cord-267234-waz0k0ms 55 1 To to TO cord-267234-waz0k0ms 55 2 test test VB cord-267234-waz0k0ms 55 3 the the DT cord-267234-waz0k0ms 55 4 evolution evolution NN cord-267234-waz0k0ms 55 5 of of IN cord-267234-waz0k0ms 55 6 L L NNP cord-267234-waz0k0ms 55 7 - - HYPH cord-267234-waz0k0ms 55 8 SIGN sign NN cord-267234-waz0k0ms 55 9 gene gene NN cord-267234-waz0k0ms 55 10 in in IN cord-267234-waz0k0ms 55 11 fishes fish NNS cord-267234-waz0k0ms 55 12 , , , cord-267234-waz0k0ms 55 13 the the DT cord-267234-waz0k0ms 55 14 CODEML CODEML NNP cord-267234-waz0k0ms 55 15 of of IN cord-267234-waz0k0ms 55 16 PAML PAML NNP cord-267234-waz0k0ms 55 17 software software NN cord-267234-waz0k0ms 55 18 ( ( -LRB- cord-267234-waz0k0ms 55 19 Yang Yang NNP cord-267234-waz0k0ms 55 20 , , , cord-267234-waz0k0ms 55 21 2007 2007 CD cord-267234-waz0k0ms 55 22 ) ) -RRB- cord-267234-waz0k0ms 55 23 and and CC cord-267234-waz0k0ms 55 24 the the DT cord-267234-waz0k0ms 55 25 Hyphy Hyphy NNP cord-267234-waz0k0ms 55 26 package package NN cord-267234-waz0k0ms 55 27 of of IN cord-267234-waz0k0ms 55 28 Data Data NNP cord-267234-waz0k0ms 55 29 Monkey Monkey NNP cord-267234-waz0k0ms 55 30 Web Web NNP cord-267234-waz0k0ms 55 31 Server Server NNP cord-267234-waz0k0ms 55 32 ( ( -LRB- cord-267234-waz0k0ms 55 33 Pond Pond NNP cord-267234-waz0k0ms 55 34 and and CC cord-267234-waz0k0ms 55 35 Frost Frost NNP cord-267234-waz0k0ms 55 36 , , , cord-267234-waz0k0ms 55 37 2005 2005 CD cord-267234-waz0k0ms 55 38 ) ) -RRB- cord-267234-waz0k0ms 55 39 were be VBD cord-267234-waz0k0ms 55 40 used use VBN cord-267234-waz0k0ms 55 41 to to TO cord-267234-waz0k0ms 55 42 estimate estimate VB cord-267234-waz0k0ms 55 43 the the DT cord-267234-waz0k0ms 55 44 ratio ratio NN cord-267234-waz0k0ms 55 45 of of IN cord-267234-waz0k0ms 55 46 ω ω NNP cord-267234-waz0k0ms 55 47 . . . cord-267234-waz0k0ms 56 1 In in IN cord-267234-waz0k0ms 56 2 both both DT cord-267234-waz0k0ms 56 3 CODEML CODEML NNP cord-267234-waz0k0ms 56 4 and and CC cord-267234-waz0k0ms 56 5 the the DT cord-267234-waz0k0ms 56 6 Data Data NNP cord-267234-waz0k0ms 56 7 Monkey Monkey NNP cord-267234-waz0k0ms 56 8 Web Web NNP cord-267234-waz0k0ms 56 9 Server Server NNP cord-267234-waz0k0ms 56 10 , , , cord-267234-waz0k0ms 56 11 several several JJ cord-267234-waz0k0ms 56 12 models model NNS cord-267234-waz0k0ms 56 13 were be VBD cord-267234-waz0k0ms 56 14 carried carry VBN cord-267234-waz0k0ms 56 15 out out RP cord-267234-waz0k0ms 56 16 as as IN cord-267234-waz0k0ms 56 17 described describe VBN cord-267234-waz0k0ms 56 18 by by IN cord-267234-waz0k0ms 56 19 Zhu Zhu NNP cord-267234-waz0k0ms 56 20 et et FW cord-267234-waz0k0ms 56 21 al al NNP cord-267234-waz0k0ms 56 22 . . . cord-267234-waz0k0ms 57 1 ( ( -LRB- cord-267234-waz0k0ms 57 2 2013b 2013b CD cord-267234-waz0k0ms 57 3 ) ) -RRB- cord-267234-waz0k0ms 57 4 . . . cord-267234-waz0k0ms 58 1 Healthy healthy JJ cord-267234-waz0k0ms 58 2 miiuy miiuy JJ cord-267234-waz0k0ms 58 3 croakers croaker NNS cord-267234-waz0k0ms 59 1 individuals individual NNS cord-267234-waz0k0ms 59 2 were be VBD cord-267234-waz0k0ms 59 3 obtained obtain VBN cord-267234-waz0k0ms 59 4 from from IN cord-267234-waz0k0ms 59 5 Zhoushan Zhoushan NNP cord-267234-waz0k0ms 59 6 Fisheries Fisheries NNP cord-267234-waz0k0ms 59 7 Research Research NNP cord-267234-waz0k0ms 59 8 Institute Institute NNP cord-267234-waz0k0ms 59 9 ( ( -LRB- cord-267234-waz0k0ms 59 10 Zhejiang Zhejiang NNP cord-267234-waz0k0ms 59 11 , , , cord-267234-waz0k0ms 59 12 China China NNP cord-267234-waz0k0ms 59 13 ) ) -RRB- cord-267234-waz0k0ms 59 14 , , , cord-267234-waz0k0ms 59 15 temporarily temporarily RB cord-267234-waz0k0ms 59 16 cultured culture VBN cord-267234-waz0k0ms 59 17 in in IN cord-267234-waz0k0ms 59 18 the the DT cord-267234-waz0k0ms 59 19 seawater seawater NN cord-267234-waz0k0ms 59 20 tank tank NN cord-267234-waz0k0ms 59 21 of of IN cord-267234-waz0k0ms 59 22 20 20 CD cord-267234-waz0k0ms 59 23 ° ° NN cord-267234-waz0k0ms 59 24 C c NN cord-267234-waz0k0ms 59 25 to to TO cord-267234-waz0k0ms 59 26 adapt adapt VB cord-267234-waz0k0ms 59 27 to to IN cord-267234-waz0k0ms 59 28 the the DT cord-267234-waz0k0ms 59 29 ambient ambient JJ cord-267234-waz0k0ms 59 30 and and CC cord-267234-waz0k0ms 59 31 evaluate evaluate VB cord-267234-waz0k0ms 59 32 of of IN cord-267234-waz0k0ms 59 33 the the DT cord-267234-waz0k0ms 59 34 fish fish NN cord-267234-waz0k0ms 59 35 health health NN cord-267234-waz0k0ms 59 36 under under IN cord-267234-waz0k0ms 59 37 a a DT cord-267234-waz0k0ms 59 38 natural natural JJ cord-267234-waz0k0ms 59 39 photoperiod photoperiod NN cord-267234-waz0k0ms 59 40 for for IN cord-267234-waz0k0ms 59 41 two two CD cord-267234-waz0k0ms 59 42 weeks week NNS cord-267234-waz0k0ms 59 43 . . . cord-267234-waz0k0ms 60 1 After after IN cord-267234-waz0k0ms 60 2 acclimatizing acclimatize VBG cord-267234-waz0k0ms 60 3 , , , cord-267234-waz0k0ms 60 4 ten ten CD cord-267234-waz0k0ms 60 5 healthy healthy JJ cord-267234-waz0k0ms 60 6 tissues tissue NNS cord-267234-waz0k0ms 60 7 ( ( -LRB- cord-267234-waz0k0ms 60 8 liver liver NN cord-267234-waz0k0ms 60 9 , , , cord-267234-waz0k0ms 60 10 spleen spleen NN cord-267234-waz0k0ms 60 11 , , , cord-267234-waz0k0ms 60 12 kidney kidney NN cord-267234-waz0k0ms 60 13 , , , cord-267234-waz0k0ms 60 14 intestines intestine NNS cord-267234-waz0k0ms 60 15 , , , cord-267234-waz0k0ms 60 16 heart heart NN cord-267234-waz0k0ms 60 17 , , , cord-267234-waz0k0ms 60 18 muscle muscle NN cord-267234-waz0k0ms 60 19 , , , cord-267234-waz0k0ms 60 20 gill gill NNP cord-267234-waz0k0ms 60 21 , , , cord-267234-waz0k0ms 60 22 brain brain NN cord-267234-waz0k0ms 60 23 , , , cord-267234-waz0k0ms 60 24 eye eye NN cord-267234-waz0k0ms 60 25 , , , cord-267234-waz0k0ms 60 26 and and CC cord-267234-waz0k0ms 60 27 fin fin NN cord-267234-waz0k0ms 60 28 ) ) -RRB- cord-267234-waz0k0ms 60 29 were be VBD cord-267234-waz0k0ms 60 30 obtained obtain VBN cord-267234-waz0k0ms 60 31 from from IN cord-267234-waz0k0ms 60 32 the the DT cord-267234-waz0k0ms 60 33 uninfected uninfected JJ cord-267234-waz0k0ms 60 34 control control NN cord-267234-waz0k0ms 60 35 fishes fish NNS cord-267234-waz0k0ms 60 36 and and CC cord-267234-waz0k0ms 60 37 kept keep VBD cord-267234-waz0k0ms 60 38 at at IN cord-267234-waz0k0ms 60 39 −80 −80 NNP cord-267234-waz0k0ms 60 40 ° ° NN cord-267234-waz0k0ms 60 41 C C NNP cord-267234-waz0k0ms 60 42 . . . cord-267234-waz0k0ms 61 1 The the DT cord-267234-waz0k0ms 61 2 challenge challenge NN cord-267234-waz0k0ms 61 3 experiments experiment NNS cord-267234-waz0k0ms 61 4 of of IN cord-267234-waz0k0ms 61 5 miiuy miiuy NNP cord-267234-waz0k0ms 61 6 croaker croaker NNP cord-267234-waz0k0ms 61 7 with with IN cord-267234-waz0k0ms 61 8 a a DT cord-267234-waz0k0ms 61 9 common common JJ cord-267234-waz0k0ms 61 10 bacterial bacterial JJ cord-267234-waz0k0ms 61 11 pathogen pathogen NN cord-267234-waz0k0ms 61 12 , , , cord-267234-waz0k0ms 61 13 Vibrio Vibrio NNP cord-267234-waz0k0ms 61 14 anguillarum anguillarum NNP cord-267234-waz0k0ms 61 15 , , , cord-267234-waz0k0ms 61 16 were be VBD cord-267234-waz0k0ms 61 17 performed perform VBN cord-267234-waz0k0ms 61 18 as as IN cord-267234-waz0k0ms 61 19 previously previously RB cord-267234-waz0k0ms 61 20 described describe VBN cord-267234-waz0k0ms 61 21 . . . cord-267234-waz0k0ms 62 1 Fish fish NN cord-267234-waz0k0ms 62 2 samples sample NNS cord-267234-waz0k0ms 62 3 were be VBD cord-267234-waz0k0ms 62 4 randomly randomly RB cord-267234-waz0k0ms 62 5 divided divide VBN cord-267234-waz0k0ms 62 6 into into IN cord-267234-waz0k0ms 62 7 two two CD cord-267234-waz0k0ms 62 8 groups group NNS cord-267234-waz0k0ms 62 9 , , , cord-267234-waz0k0ms 62 10 injection injection NN cord-267234-waz0k0ms 62 11 and and CC cord-267234-waz0k0ms 62 12 control control NN cord-267234-waz0k0ms 62 13 groups group NNS cord-267234-waz0k0ms 62 14 . . . cord-267234-waz0k0ms 63 1 In in IN cord-267234-waz0k0ms 63 2 injection injection NN cord-267234-waz0k0ms 63 3 group group NN cord-267234-waz0k0ms 63 4 , , , cord-267234-waz0k0ms 63 5 fishes fish NNS cord-267234-waz0k0ms 63 6 were be VBD cord-267234-waz0k0ms 63 7 injected inject VBN cord-267234-waz0k0ms 63 8 with with IN cord-267234-waz0k0ms 63 9 1 1 CD cord-267234-waz0k0ms 63 10 ml ml NN cord-267234-waz0k0ms 63 11 suspension suspension NN cord-267234-waz0k0ms 63 12 ( ( -LRB- cord-267234-waz0k0ms 63 13 3.0 3.0 CD cord-267234-waz0k0ms 63 14 × × NNP cord-267234-waz0k0ms 63 15 10 10 CD cord-267234-waz0k0ms 63 16 7 7 CD cord-267234-waz0k0ms 63 17 CFU CFU NNP cord-267234-waz0k0ms 63 18 / / SYM cord-267234-waz0k0ms 63 19 ml ml NN cord-267234-waz0k0ms 63 20 ) ) -RRB- cord-267234-waz0k0ms 63 21 . . . cord-267234-waz0k0ms 64 1 At at IN cord-267234-waz0k0ms 64 2 6 6 CD cord-267234-waz0k0ms 64 3 h h NN cord-267234-waz0k0ms 64 4 , , , cord-267234-waz0k0ms 64 5 12 12 CD cord-267234-waz0k0ms 64 6 h h NN cord-267234-waz0k0ms 64 7 , , , cord-267234-waz0k0ms 64 8 24 24 CD cord-267234-waz0k0ms 64 9 h h NNP cord-267234-waz0k0ms 64 10 , , , cord-267234-waz0k0ms 64 11 36 36 CD cord-267234-waz0k0ms 64 12 h h NN cord-267234-waz0k0ms 64 13 , , , cord-267234-waz0k0ms 64 14 48 48 CD cord-267234-waz0k0ms 64 15 h h NN cord-267234-waz0k0ms 64 16 and and CC cord-267234-waz0k0ms 64 17 72 72 CD cord-267234-waz0k0ms 64 18 h h NN cord-267234-waz0k0ms 64 19 post post NN cord-267234-waz0k0ms 64 20 - - NN cord-267234-waz0k0ms 64 21 injection injection JJ cord-267234-waz0k0ms 64 22 , , , cord-267234-waz0k0ms 64 23 fish fish NN cord-267234-waz0k0ms 64 24 samples sample NNS cord-267234-waz0k0ms 64 25 were be VBD cord-267234-waz0k0ms 64 26 killed kill VBN cord-267234-waz0k0ms 64 27 and and CC cord-267234-waz0k0ms 64 28 three three CD cord-267234-waz0k0ms 64 29 tissues tissue NNS cord-267234-waz0k0ms 64 30 ( ( -LRB- cord-267234-waz0k0ms 64 31 liver liver NN cord-267234-waz0k0ms 64 32 , , , cord-267234-waz0k0ms 64 33 kidney kidney NN cord-267234-waz0k0ms 64 34 and and CC cord-267234-waz0k0ms 64 35 spleen spleen NN cord-267234-waz0k0ms 64 36 ) ) -RRB- cord-267234-waz0k0ms 64 37 of of IN cord-267234-waz0k0ms 64 38 infection infection NN cord-267234-waz0k0ms 64 39 were be VBD cord-267234-waz0k0ms 64 40 removed remove VBN cord-267234-waz0k0ms 64 41 and and CC cord-267234-waz0k0ms 64 42 stored store VBN cord-267234-waz0k0ms 64 43 at at IN cord-267234-waz0k0ms 64 44 −80 −80 NNP cord-267234-waz0k0ms 64 45 ° ° NN cord-267234-waz0k0ms 64 46 C C NNP cord-267234-waz0k0ms 64 47 . . . cord-267234-waz0k0ms 65 1 Total Total NNP cord-267234-waz0k0ms 65 2 RNA RNA NNP cord-267234-waz0k0ms 65 3 was be VBD cord-267234-waz0k0ms 65 4 extracted extract VBN cord-267234-waz0k0ms 65 5 from from IN cord-267234-waz0k0ms 65 6 the the DT cord-267234-waz0k0ms 65 7 various various JJ cord-267234-waz0k0ms 65 8 tissues tissue NNS cord-267234-waz0k0ms 65 9 samples sample NNS cord-267234-waz0k0ms 65 10 by by IN cord-267234-waz0k0ms 65 11 Trizol Trizol NNP cord-267234-waz0k0ms 65 12 reagent reagent NN cord-267234-waz0k0ms 65 13 ( ( -LRB- cord-267234-waz0k0ms 65 14 Qiagen Qiagen NNP cord-267234-waz0k0ms 65 15 ) ) -RRB- cord-267234-waz0k0ms 65 16 following follow VBG cord-267234-waz0k0ms 65 17 the the DT cord-267234-waz0k0ms 65 18 manufacturer manufacturer NN cord-267234-waz0k0ms 65 19 's 's POS cord-267234-waz0k0ms 65 20 instructions instruction NNS cord-267234-waz0k0ms 65 21 and and CC cord-267234-waz0k0ms 65 22 cDNA cdna NN cord-267234-waz0k0ms 65 23 was be VBD cord-267234-waz0k0ms 65 24 synthesized synthesize VBN cord-267234-waz0k0ms 65 25 using use VBG cord-267234-waz0k0ms 65 26 QuantScript QuantScript NNP cord-267234-waz0k0ms 65 27 RT RT NNP cord-267234-waz0k0ms 65 28 Kit kit NN cord-267234-waz0k0ms 65 29 ( ( -LRB- cord-267234-waz0k0ms 65 30 TIANGEN TIANGEN NNP cord-267234-waz0k0ms 65 31 ) ) -RRB- cord-267234-waz0k0ms 65 32 according accord VBG cord-267234-waz0k0ms 65 33 to to IN cord-267234-waz0k0ms 65 34 the the DT cord-267234-waz0k0ms 65 35 manufacturer manufacturer NN cord-267234-waz0k0ms 65 36 's 's POS cord-267234-waz0k0ms 65 37 protocol protocol NN cord-267234-waz0k0ms 65 38 which which WDT cord-267234-waz0k0ms 65 39 stored store VBD cord-267234-waz0k0ms 65 40 at at IN cord-267234-waz0k0ms 65 41 −20 −20 NNP cord-267234-waz0k0ms 65 42 ° ° NN cord-267234-waz0k0ms 65 43 C C NNP cord-267234-waz0k0ms 65 44 for for IN cord-267234-waz0k0ms 65 45 further further JJ cord-267234-waz0k0ms 65 46 experiment experiment NN cord-267234-waz0k0ms 65 47 . . . cord-267234-waz0k0ms 66 1 Three three CD cord-267234-waz0k0ms 66 2 pairs pair NNS cord-267234-waz0k0ms 66 3 of of IN cord-267234-waz0k0ms 66 4 primers primer NNS cord-267234-waz0k0ms 66 5 ( ( -LRB- cord-267234-waz0k0ms 66 6 DC DC NNP cord-267234-waz0k0ms 66 7 - - HYPH cord-267234-waz0k0ms 66 8 SIGN sign NN cord-267234-waz0k0ms 66 9 - - HYPH cord-267234-waz0k0ms 66 10 RT RT NNP cord-267234-waz0k0ms 66 11 - - HYPH cord-267234-waz0k0ms 66 12 F F NNP cord-267234-waz0k0ms 66 13 / / SYM cord-267234-waz0k0ms 66 14 R R NNP cord-267234-waz0k0ms 66 15 , , , cord-267234-waz0k0ms 66 16 L l NN cord-267234-waz0k0ms 66 17 - - HYPH cord-267234-waz0k0ms 66 18 SIGN sign NN cord-267234-waz0k0ms 66 19 - - HYPH cord-267234-waz0k0ms 66 20 RT RT NNP cord-267234-waz0k0ms 66 21 - - HYPH cord-267234-waz0k0ms 66 22 F F NNP cord-267234-waz0k0ms 66 23 / / SYM cord-267234-waz0k0ms 66 24 R R NNP cord-267234-waz0k0ms 66 25 , , , cord-267234-waz0k0ms 66 26 β β NN cord-267234-waz0k0ms 66 27 - - HYPH cord-267234-waz0k0ms 66 28 actin actin NNP cord-267234-waz0k0ms 66 29 - - HYPH cord-267234-waz0k0ms 66 30 RT RT NNP cord-267234-waz0k0ms 66 31 - - HYPH cord-267234-waz0k0ms 66 32 F F NNP cord-267234-waz0k0ms 66 33 / / SYM cord-267234-waz0k0ms 66 34 R R NNP cord-267234-waz0k0ms 66 35 ) ) -RRB- cord-267234-waz0k0ms 66 36 were be VBD cord-267234-waz0k0ms 66 37 designed design VBN cord-267234-waz0k0ms 66 38 to to TO cord-267234-waz0k0ms 66 39 study study VB cord-267234-waz0k0ms 66 40 the the DT cord-267234-waz0k0ms 66 41 expression expression NN cord-267234-waz0k0ms 66 42 level level NN cord-267234-waz0k0ms 66 43 of of IN cord-267234-waz0k0ms 66 44 mmDC mmdc NN cord-267234-waz0k0ms 66 45 - - HYPH cord-267234-waz0k0ms 66 46 SIGN sign NN cord-267234-waz0k0ms 66 47 and and CC cord-267234-waz0k0ms 66 48 mmL mml NN cord-267234-waz0k0ms 66 49 - - HYPH cord-267234-waz0k0ms 66 50 SIGN sign NN cord-267234-waz0k0ms 66 51 ( ( -LRB- cord-267234-waz0k0ms 66 52 Supplementary supplementary JJ cord-267234-waz0k0ms 66 53 Table Table NNP cord-267234-waz0k0ms 66 54 S1 S1 NNP cord-267234-waz0k0ms 66 55 ) ) -RRB- cord-267234-waz0k0ms 66 56 . . . cord-267234-waz0k0ms 67 1 Real real JJ cord-267234-waz0k0ms 67 2 time time NN cord-267234-waz0k0ms 67 3 quantitative quantitative JJ cord-267234-waz0k0ms 67 4 PCR(qRT PCR(qRT NNP cord-267234-waz0k0ms 67 5 - - HYPH cord-267234-waz0k0ms 67 6 PCR PCR NNP cord-267234-waz0k0ms 67 7 ) ) -RRB- cord-267234-waz0k0ms 67 8 was be VBD cord-267234-waz0k0ms 67 9 used use VBN cord-267234-waz0k0ms 67 10 to to TO cord-267234-waz0k0ms 67 11 test test VB cord-267234-waz0k0ms 67 12 DC DC NNP cord-267234-waz0k0ms 67 13 - - HYPH cord-267234-waz0k0ms 67 14 SIGN SIGN NNP cord-267234-waz0k0ms 67 15 and and CC cord-267234-waz0k0ms 67 16 L l NN cord-267234-waz0k0ms 67 17 - - HYPH cord-267234-waz0k0ms 67 18 SIGN sign NN cord-267234-waz0k0ms 67 19 genes gene NNS cord-267234-waz0k0ms 67 20 expression expression NN cord-267234-waz0k0ms 67 21 level level NN cord-267234-waz0k0ms 67 22 in in IN cord-267234-waz0k0ms 67 23 ten ten CD cord-267234-waz0k0ms 67 24 uninfected uninfected JJ cord-267234-waz0k0ms 67 25 tissues tissue NNS cord-267234-waz0k0ms 67 26 ( ( -LRB- cord-267234-waz0k0ms 67 27 liver liver NN cord-267234-waz0k0ms 67 28 , , , cord-267234-waz0k0ms 67 29 spleen spleen NN cord-267234-waz0k0ms 67 30 , , , cord-267234-waz0k0ms 67 31 kidney kidney NN cord-267234-waz0k0ms 67 32 , , , cord-267234-waz0k0ms 67 33 intestines intestine NNS cord-267234-waz0k0ms 67 34 , , , cord-267234-waz0k0ms 67 35 heart heart NN cord-267234-waz0k0ms 67 36 , , , cord-267234-waz0k0ms 67 37 muscle muscle NN cord-267234-waz0k0ms 67 38 , , , cord-267234-waz0k0ms 67 39 eye eye NN cord-267234-waz0k0ms 67 40 , , , cord-267234-waz0k0ms 67 41 brain brain NN cord-267234-waz0k0ms 67 42 , , , cord-267234-waz0k0ms 67 43 fin fin NNP cord-267234-waz0k0ms 67 44 , , , cord-267234-waz0k0ms 67 45 gill gill NNP cord-267234-waz0k0ms 67 46 ) ) -RRB- cord-267234-waz0k0ms 67 47 and and CC cord-267234-waz0k0ms 67 48 in in IN cord-267234-waz0k0ms 67 49 three three CD cord-267234-waz0k0ms 67 50 infected infected JJ cord-267234-waz0k0ms 67 51 tissues tissue NNS cord-267234-waz0k0ms 67 52 ( ( -LRB- cord-267234-waz0k0ms 67 53 liver liver NN cord-267234-waz0k0ms 67 54 , , , cord-267234-waz0k0ms 67 55 spleen spleen NN cord-267234-waz0k0ms 67 56 and and CC cord-267234-waz0k0ms 67 57 kidney kidney NN cord-267234-waz0k0ms 67 58 ) ) -RRB- cord-267234-waz0k0ms 68 1 The the DT cord-267234-waz0k0ms 68 2 RT RT NNP cord-267234-waz0k0ms 68 3 - - HYPH cord-267234-waz0k0ms 68 4 PCR PCR NNP cord-267234-waz0k0ms 68 5 was be VBD cord-267234-waz0k0ms 68 6 executed execute VBN cord-267234-waz0k0ms 68 7 on on IN cord-267234-waz0k0ms 68 8 a a DT cord-267234-waz0k0ms 68 9 7500 7500 CD cord-267234-waz0k0ms 68 10 Real real JJ cord-267234-waz0k0ms 68 11 time time NN cord-267234-waz0k0ms 68 12 PCR pcr NN cord-267234-waz0k0ms 68 13 system system NN cord-267234-waz0k0ms 68 14 ( ( -LRB- cord-267234-waz0k0ms 68 15 Applied Applied NNP cord-267234-waz0k0ms 68 16 Biosystems Biosystems NNP cord-267234-waz0k0ms 68 17 , , , cord-267234-waz0k0ms 68 18 USA USA NNP cord-267234-waz0k0ms 68 19 ) ) -RRB- cord-267234-waz0k0ms 68 20 and and CC cord-267234-waz0k0ms 68 21 every every DT cord-267234-waz0k0ms 68 22 expression expression NN cord-267234-waz0k0ms 68 23 was be VBD cord-267234-waz0k0ms 68 24 performed perform VBN cord-267234-waz0k0ms 68 25 in in IN cord-267234-waz0k0ms 68 26 three three CD cord-267234-waz0k0ms 68 27 independent independent JJ cord-267234-waz0k0ms 68 28 replicates replicate NNS cord-267234-waz0k0ms 68 29 in in IN cord-267234-waz0k0ms 68 30 the the DT cord-267234-waz0k0ms 68 31 same same JJ cord-267234-waz0k0ms 68 32 condition condition NN cord-267234-waz0k0ms 68 33 . . . cord-267234-waz0k0ms 69 1 The the DT cord-267234-waz0k0ms 69 2 conditions condition NNS cord-267234-waz0k0ms 69 3 of of IN cord-267234-waz0k0ms 69 4 the the DT cord-267234-waz0k0ms 69 5 RT RT NNP cord-267234-waz0k0ms 69 6 - - HYPH cord-267234-waz0k0ms 69 7 PCR PCR NNP cord-267234-waz0k0ms 69 8 was be VBD cord-267234-waz0k0ms 69 9 carried carry VBN cord-267234-waz0k0ms 69 10 out out RP cord-267234-waz0k0ms 69 11 as as IN cord-267234-waz0k0ms 69 12 described describe VBN cord-267234-waz0k0ms 69 13 by by IN cord-267234-waz0k0ms 69 14 Xu Xu NNP cord-267234-waz0k0ms 69 15 et et NNP cord-267234-waz0k0ms 69 16 al al NNP cord-267234-waz0k0ms 69 17 . . . cord-267234-waz0k0ms 70 1 ( ( -LRB- cord-267234-waz0k0ms 70 2 2014 2014 CD cord-267234-waz0k0ms 70 3 ) ) -RRB- cord-267234-waz0k0ms 70 4 . . . cord-267234-waz0k0ms 71 1 Significance significance NN cord-267234-waz0k0ms 71 2 test test NN cord-267234-waz0k0ms 71 3 of of IN cord-267234-waz0k0ms 71 4 the the DT cord-267234-waz0k0ms 71 5 expression expression NN cord-267234-waz0k0ms 71 6 level level NN cord-267234-waz0k0ms 71 7 was be VBD cord-267234-waz0k0ms 71 8 analyzed analyze VBN cord-267234-waz0k0ms 71 9 by by IN cord-267234-waz0k0ms 71 10 a a DT cord-267234-waz0k0ms 71 11 Duncan Duncan NNP cord-267234-waz0k0ms 71 12 test test NN cord-267234-waz0k0ms 71 13 . . . cord-267234-waz0k0ms 72 1 Expression expression NN cord-267234-waz0k0ms 72 2 differences difference NNS cord-267234-waz0k0ms 72 3 were be VBD cord-267234-waz0k0ms 72 4 considered consider VBN cord-267234-waz0k0ms 72 5 at at IN cord-267234-waz0k0ms 72 6 a a DT cord-267234-waz0k0ms 72 7 significance significance NN cord-267234-waz0k0ms 72 8 level level NN cord-267234-waz0k0ms 72 9 when when WRB cord-267234-waz0k0ms 72 10 p p NN cord-267234-waz0k0ms 72 11 < < XX cord-267234-waz0k0ms 72 12 0.05 0.05 CD cord-267234-waz0k0ms 72 13 and and CC cord-267234-waz0k0ms 72 14 all all DT cord-267234-waz0k0ms 72 15 data datum NNS cord-267234-waz0k0ms 72 16 were be VBD cord-267234-waz0k0ms 72 17 expressed express VBN cord-267234-waz0k0ms 72 18 as as IN cord-267234-waz0k0ms 72 19 the the DT cord-267234-waz0k0ms 72 20 mean mean JJ cord-267234-waz0k0ms 72 21 ± ± NNP cord-267234-waz0k0ms 72 22 SE SE NNP cord-267234-waz0k0ms 72 23 ( ( -LRB- cord-267234-waz0k0ms 72 24 standard standard JJ cord-267234-waz0k0ms 72 25 error error NN cord-267234-waz0k0ms 72 26 ) ) -RRB- cord-267234-waz0k0ms 72 27 . . . cord-267234-waz0k0ms 73 1 The the DT cord-267234-waz0k0ms 73 2 full full JJ cord-267234-waz0k0ms 73 3 length length NN cord-267234-waz0k0ms 73 4 mmDC mmdc NN cord-267234-waz0k0ms 73 5 - - HYPH cord-267234-waz0k0ms 73 6 SIGN sign NN cord-267234-waz0k0ms 73 7 and and CC cord-267234-waz0k0ms 73 8 mmL mml JJ cord-267234-waz0k0ms 73 9 - - HYPH cord-267234-waz0k0ms 73 10 SIGN sign NN cord-267234-waz0k0ms 73 11 genes gene NNS cord-267234-waz0k0ms 73 12 were be VBD cord-267234-waz0k0ms 73 13 successfully successfully RB cord-267234-waz0k0ms 73 14 obtained obtain VBN cord-267234-waz0k0ms 73 15 . . . cord-267234-waz0k0ms 74 1 The the DT cord-267234-waz0k0ms 74 2 cDNA cdna NN cord-267234-waz0k0ms 74 3 sequence sequence NN cord-267234-waz0k0ms 74 4 of of IN cord-267234-waz0k0ms 74 5 mmDC mmdc NN cord-267234-waz0k0ms 74 6 - - HYPH cord-267234-waz0k0ms 74 7 SIGN sign NN cord-267234-waz0k0ms 74 8 which which WDT cord-267234-waz0k0ms 74 9 had have VBD cord-267234-waz0k0ms 74 10 5 5 CD cord-267234-waz0k0ms 74 11 exons exon NNS cord-267234-waz0k0ms 74 12 and and CC cord-267234-waz0k0ms 74 13 4 4 CD cord-267234-waz0k0ms 74 14 introns intron NNS cord-267234-waz0k0ms 74 15 was be VBD cord-267234-waz0k0ms 74 16 766 766 CD cord-267234-waz0k0ms 74 17 bp bp NNP cord-267234-waz0k0ms 74 18 containing contain VBG cord-267234-waz0k0ms 74 19 a a DT cord-267234-waz0k0ms 74 20 5'-UTR 5'-utr CD cord-267234-waz0k0ms 74 21 of of IN cord-267234-waz0k0ms 74 22 33 33 CD cord-267234-waz0k0ms 74 23 bp bp NNP cord-267234-waz0k0ms 74 24 , , , cord-267234-waz0k0ms 74 25 a a DT cord-267234-waz0k0ms 74 26 3'-UTR 3'-utr CD cord-267234-waz0k0ms 74 27 of of IN cord-267234-waz0k0ms 74 28 94 94 CD cord-267234-waz0k0ms 74 29 bp bp NNP cord-267234-waz0k0ms 74 30 and and CC cord-267234-waz0k0ms 74 31 an an DT cord-267234-waz0k0ms 74 32 ORF ORF NNP cord-267234-waz0k0ms 74 33 of of IN cord-267234-waz0k0ms 74 34 639 639 CD cord-267234-waz0k0ms 74 35 bp bp NN cord-267234-waz0k0ms 74 36 coding code VBG cord-267234-waz0k0ms 74 37 212 212 CD cord-267234-waz0k0ms 74 38 amino amino JJ cord-267234-waz0k0ms 74 39 acids acid NNS cord-267234-waz0k0ms 74 40 ( ( -LRB- cord-267234-waz0k0ms 74 41 Fig Fig NNP cord-267234-waz0k0ms 74 42 . . . cord-267234-waz0k0ms 74 43 1A 1a NN cord-267234-waz0k0ms 74 44 ) ) -RRB- cord-267234-waz0k0ms 74 45 . . . cord-267234-waz0k0ms 75 1 The the DT cord-267234-waz0k0ms 75 2 cDNA cdna NN cord-267234-waz0k0ms 75 3 sequence sequence NN cord-267234-waz0k0ms 75 4 of of IN cord-267234-waz0k0ms 75 5 mmL mmL NNP cord-267234-waz0k0ms 75 6 - - HYPH cord-267234-waz0k0ms 75 7 SIGN sign NN cord-267234-waz0k0ms 75 8 which which WDT cord-267234-waz0k0ms 75 9 had have VBD cord-267234-waz0k0ms 75 10 6 6 CD cord-267234-waz0k0ms 75 11 exons exon NNS cord-267234-waz0k0ms 75 12 and and CC cord-267234-waz0k0ms 75 13 5 5 CD cord-267234-waz0k0ms 75 14 introns intron NNS cord-267234-waz0k0ms 75 15 was be VBD cord-267234-waz0k0ms 75 16 1617 1617 CD cord-267234-waz0k0ms 75 17 bp bp NNP cord-267234-waz0k0ms 75 18 containing contain VBG cord-267234-waz0k0ms 75 19 a a DT cord-267234-waz0k0ms 75 20 5'-UTR 5'-utr CD cord-267234-waz0k0ms 75 21 of of IN cord-267234-waz0k0ms 75 22 44 44 CD cord-267234-waz0k0ms 75 23 bp bp NNP cord-267234-waz0k0ms 75 24 , , , cord-267234-waz0k0ms 75 25 a a DT cord-267234-waz0k0ms 75 26 3'-UTR 3'-utr CD cord-267234-waz0k0ms 75 27 of of IN cord-267234-waz0k0ms 75 28 628 628 CD cord-267234-waz0k0ms 75 29 bp bp NNP cord-267234-waz0k0ms 75 30 with with IN cord-267234-waz0k0ms 75 31 polyadenylation polyadenylation NN cord-267234-waz0k0ms 75 32 signal signal NN cord-267234-waz0k0ms 75 33 ( ( -LRB- cord-267234-waz0k0ms 75 34 AATAAA AATAAA NNP cord-267234-waz0k0ms 75 35 ) ) -RRB- cord-267234-waz0k0ms 75 36 at at IN cord-267234-waz0k0ms 75 37 172 172 CD cord-267234-waz0k0ms 75 38 bp bp NNP cord-267234-waz0k0ms 75 39 downstream downstream NN cord-267234-waz0k0ms 75 40 of of IN cord-267234-waz0k0ms 75 41 the the DT cord-267234-waz0k0ms 75 42 translation translation NN cord-267234-waz0k0ms 75 43 termination termination NN cord-267234-waz0k0ms 75 44 codon codon NN cord-267234-waz0k0ms 75 45 and and CC cord-267234-waz0k0ms 75 46 an an DT cord-267234-waz0k0ms 75 47 ORF ORF NNP cord-267234-waz0k0ms 75 48 of of IN cord-267234-waz0k0ms 75 49 945 945 CD cord-267234-waz0k0ms 75 50 bp bp NN cord-267234-waz0k0ms 75 51 coding code VBG cord-267234-waz0k0ms 75 52 314 314 CD cord-267234-waz0k0ms 75 53 amino amino JJ cord-267234-waz0k0ms 75 54 acids acid NNS cord-267234-waz0k0ms 75 55 ( ( -LRB- cord-267234-waz0k0ms 75 56 Fig Fig NNP cord-267234-waz0k0ms 75 57 . . . cord-267234-waz0k0ms 75 58 1B 1b CD cord-267234-waz0k0ms 75 59 ) ) -RRB- cord-267234-waz0k0ms 75 60 . . . cord-267234-waz0k0ms 76 1 Introns intron NNS cord-267234-waz0k0ms 76 2 in in IN cord-267234-waz0k0ms 76 3 both both DT cord-267234-waz0k0ms 76 4 mmDC mmdc NN cord-267234-waz0k0ms 76 5 - - HYPH cord-267234-waz0k0ms 76 6 SIGN sign NN cord-267234-waz0k0ms 76 7 and and CC cord-267234-waz0k0ms 76 8 mmL mmL NNP cord-267234-waz0k0ms 76 9 - - HYPH cord-267234-waz0k0ms 76 10 SIGN sign NN cord-267234-waz0k0ms 76 11 appeared appear VBD cord-267234-waz0k0ms 76 12 the the DT cord-267234-waz0k0ms 76 13 pattern pattern NN cord-267234-waz0k0ms 76 14 of of IN cord-267234-waz0k0ms 76 15 GT GT NNP cord-267234-waz0k0ms 76 16 / / SYM cord-267234-waz0k0ms 76 17 AG AG NNP cord-267234-waz0k0ms 76 18 known know VBN cord-267234-waz0k0ms 76 19 by by IN cord-267234-waz0k0ms 76 20 comparison comparison NN cord-267234-waz0k0ms 76 21 with with IN cord-267234-waz0k0ms 76 22 other other JJ cord-267234-waz0k0ms 76 23 vertebrates vertebrate NNS cord-267234-waz0k0ms 77 1 DC DC NNP cord-267234-waz0k0ms 77 2 - - HYPH cord-267234-waz0k0ms 77 3 SIGN SIGN NNP cord-267234-waz0k0ms 77 4 and and CC cord-267234-waz0k0ms 77 5 L l NN cord-267234-waz0k0ms 77 6 - - HYPH cord-267234-waz0k0ms 77 7 SIGN sign NN cord-267234-waz0k0ms 77 8 sequences sequence NNS cord-267234-waz0k0ms 77 9 separately separately RB cord-267234-waz0k0ms 77 10 , , , cord-267234-waz0k0ms 77 11 while while IN cord-267234-waz0k0ms 77 12 comparison comparison NN cord-267234-waz0k0ms 77 13 of of IN cord-267234-waz0k0ms 77 14 the the DT cord-267234-waz0k0ms 77 15 deduced deduce VBN cord-267234-waz0k0ms 77 16 amino amino NN cord-267234-waz0k0ms 77 17 acid acid NN cord-267234-waz0k0ms 77 18 sequences sequence NNS cord-267234-waz0k0ms 77 19 showed show VBD cord-267234-waz0k0ms 77 20 that that IN cord-267234-waz0k0ms 77 21 mmDC mmdc NN cord-267234-waz0k0ms 77 22 - - HYPH cord-267234-waz0k0ms 77 23 SIGN sign NN cord-267234-waz0k0ms 77 24 shared share VBD cord-267234-waz0k0ms 77 25 50.8 50.8 CD cord-267234-waz0k0ms 77 26 % % NN cord-267234-waz0k0ms 77 27 to to IN cord-267234-waz0k0ms 77 28 96.4 96.4 CD cord-267234-waz0k0ms 77 29 % % NN cord-267234-waz0k0ms 77 30 identity identity NN cord-267234-waz0k0ms 77 31 with with IN cord-267234-waz0k0ms 77 32 DC DC NNP cord-267234-waz0k0ms 77 33 - - HYPH cord-267234-waz0k0ms 77 34 SIGN SIGN NNP cord-267234-waz0k0ms 77 35 from from IN cord-267234-waz0k0ms 77 36 other other JJ cord-267234-waz0k0ms 77 37 species specie NNS cord-267234-waz0k0ms 77 38 and and CC cord-267234-waz0k0ms 77 39 mmL mml JJ cord-267234-waz0k0ms 77 40 - - HYPH cord-267234-waz0k0ms 77 41 SIGN sign NN cord-267234-waz0k0ms 77 42 shared share VBD cord-267234-waz0k0ms 77 43 46.9 46.9 CD cord-267234-waz0k0ms 77 44 % % NN cord-267234-waz0k0ms 77 45 to to IN cord-267234-waz0k0ms 77 46 77.3 77.3 CD cord-267234-waz0k0ms 77 47 % % NN cord-267234-waz0k0ms 77 48 identity identity NN cord-267234-waz0k0ms 77 49 with with IN cord-267234-waz0k0ms 77 50 other other JJ cord-267234-waz0k0ms 77 51 species specie NNS cord-267234-waz0k0ms 77 52 separately separately RB cord-267234-waz0k0ms 78 1 ( ( -LRB- cord-267234-waz0k0ms 78 2 Supplementary supplementary JJ cord-267234-waz0k0ms 78 3 _SP cord-267234-waz0k0ms 78 4 Table Table NNP cord-267234-waz0k0ms 78 5 S2 S2 NNP cord-267234-waz0k0ms 78 6 ) ) -RRB- cord-267234-waz0k0ms 78 7 . . . cord-267234-waz0k0ms 79 1 Both both DT cord-267234-waz0k0ms 79 2 mmDC mmdc NN cord-267234-waz0k0ms 79 3 - - HYPH cord-267234-waz0k0ms 79 4 SIGN sign NN cord-267234-waz0k0ms 79 5 and and CC cord-267234-waz0k0ms 79 6 mmL mml JJ cord-267234-waz0k0ms 79 7 - - HYPH cord-267234-waz0k0ms 79 8 SIGN sign NN cord-267234-waz0k0ms 79 9 amino amino NN cord-267234-waz0k0ms 79 10 acid acid NN cord-267234-waz0k0ms 79 11 sequences sequence NNS cord-267234-waz0k0ms 79 12 had have VBD cord-267234-waz0k0ms 79 13 two two CD cord-267234-waz0k0ms 79 14 domains domain NNS cord-267234-waz0k0ms 79 15 : : : cord-267234-waz0k0ms 79 16 a a DT cord-267234-waz0k0ms 79 17 transmembrane transmembrane NN cord-267234-waz0k0ms 79 18 region region NN cord-267234-waz0k0ms 79 19 and and CC cord-267234-waz0k0ms 79 20 a a DT cord-267234-waz0k0ms 79 21 CRD crd NN cord-267234-waz0k0ms 79 22 differing differ VBG cord-267234-waz0k0ms 79 23 from from IN cord-267234-waz0k0ms 79 24 primates primate NNS cord-267234-waz0k0ms 79 25 which which WDT cord-267234-waz0k0ms 79 26 had have VBD cord-267234-waz0k0ms 79 27 specific specific JJ cord-267234-waz0k0ms 79 28 internal internal JJ cord-267234-waz0k0ms 79 29 repeat repeat NN cord-267234-waz0k0ms 79 30 domain domain NN cord-267234-waz0k0ms 79 31 ( ( -LRB- cord-267234-waz0k0ms 79 32 Fig Fig NNP cord-267234-waz0k0ms 79 33 . . . cord-267234-waz0k0ms 79 34 1C 1C NNP cord-267234-waz0k0ms 79 35 , , , cord-267234-waz0k0ms 79 36 D D NNP cord-267234-waz0k0ms 79 37 ) ) -RRB- cord-267234-waz0k0ms 79 38 . . . cord-267234-waz0k0ms 80 1 In in IN cord-267234-waz0k0ms 80 2 the the DT cord-267234-waz0k0ms 80 3 DC DC NNP cord-267234-waz0k0ms 80 4 - - HYPH cord-267234-waz0k0ms 80 5 SIGN sign NN cord-267234-waz0k0ms 80 6 CRD crd NN cord-267234-waz0k0ms 80 7 domain domain NN cord-267234-waz0k0ms 80 8 , , , cord-267234-waz0k0ms 80 9 EPD EPD NNP cord-267234-waz0k0ms 80 10 motif motif NN cord-267234-waz0k0ms 80 11 and and CC cord-267234-waz0k0ms 80 12 WYD WYD NNP cord-267234-waz0k0ms 80 13 motif motif NN cord-267234-waz0k0ms 80 14 existed exist VBD cord-267234-waz0k0ms 80 15 in in IN cord-267234-waz0k0ms 80 16 miiuy miiuy NNP cord-267234-waz0k0ms 80 17 croaker croaker NN cord-267234-waz0k0ms 80 18 and and CC cord-267234-waz0k0ms 80 19 large large JJ cord-267234-waz0k0ms 80 20 yellow yellow JJ cord-267234-waz0k0ms 80 21 croaker croaker NN cord-267234-waz0k0ms 80 22 instead instead RB cord-267234-waz0k0ms 80 23 of of IN cord-267234-waz0k0ms 80 24 EPN EPN NNP cord-267234-waz0k0ms 80 25 motif motif NN cord-267234-waz0k0ms 80 26 and and CC cord-267234-waz0k0ms 80 27 WND WND NNP cord-267234-waz0k0ms 80 28 motif motif NN cord-267234-waz0k0ms 80 29 in in IN cord-267234-waz0k0ms 80 30 all all DT cord-267234-waz0k0ms 80 31 other other JJ cord-267234-waz0k0ms 80 32 species specie NNS cord-267234-waz0k0ms 80 33 for for IN cord-267234-waz0k0ms 80 34 determining determine VBG cord-267234-waz0k0ms 80 35 the the DT cord-267234-waz0k0ms 80 36 carbohydrate carbohydrate NN cord-267234-waz0k0ms 80 37 binding bind VBG cord-267234-waz0k0ms 80 38 specificity specificity NN cord-267234-waz0k0ms 80 39 ( ( -LRB- cord-267234-waz0k0ms 80 40 Kong Kong NNP cord-267234-waz0k0ms 80 41 et et NNP cord-267234-waz0k0ms 80 42 al al NNP cord-267234-waz0k0ms 80 43 . . NNP cord-267234-waz0k0ms 80 44 , , , cord-267234-waz0k0ms 80 45 2011 2011 CD cord-267234-waz0k0ms 80 46 ) ) -RRB- cord-267234-waz0k0ms 80 47 ; ; : cord-267234-waz0k0ms 80 48 EPN EPN NNP cord-267234-waz0k0ms 80 49 motif motif NN cord-267234-waz0k0ms 80 50 , , , cord-267234-waz0k0ms 80 51 WND WND NNP cord-267234-waz0k0ms 80 52 motif motif NN cord-267234-waz0k0ms 80 53 and and CC cord-267234-waz0k0ms 80 54 four four CD cord-267234-waz0k0ms 80 55 amino amino NN cord-267234-waz0k0ms 80 56 acids acid NNS cord-267234-waz0k0ms 80 57 ( ( -LRB- cord-267234-waz0k0ms 80 58 Glu269 glu269 CD cord-267234-waz0k0ms 80 59 , , , cord-267234-waz0k0ms 80 60 Asn271 asn271 CD cord-267234-waz0k0ms 80 61 , , , cord-267234-waz0k0ms 81 1 Glu276 Glu276 NNP cord-267234-waz0k0ms 81 2 and and CC cord-267234-waz0k0ms 81 3 Asn292 asn292 CD cord-267234-waz0k0ms 81 4 ) ) -RRB- cord-267234-waz0k0ms 81 5 existing exist VBG cord-267234-waz0k0ms 81 6 in in IN cord-267234-waz0k0ms 81 7 CRD CRD NNP cord-267234-waz0k0ms 81 8 domain domain NN cord-267234-waz0k0ms 81 9 of of IN cord-267234-waz0k0ms 81 10 mmL mmL NNP cord-267234-waz0k0ms 81 11 - - HYPH cord-267234-waz0k0ms 81 12 SIGN sign NN cord-267234-waz0k0ms 81 13 are be VBP cord-267234-waz0k0ms 81 14 well well RB cord-267234-waz0k0ms 81 15 conserved conserve VBN cord-267234-waz0k0ms 81 16 from from IN cord-267234-waz0k0ms 81 17 fish fish NN cord-267234-waz0k0ms 81 18 to to IN cord-267234-waz0k0ms 81 19 human human NN cord-267234-waz0k0ms 81 20 . . . cord-267234-waz0k0ms 82 1 All all DT cord-267234-waz0k0ms 82 2 of of IN cord-267234-waz0k0ms 82 3 the the DT cord-267234-waz0k0ms 82 4 conserved conserved JJ cord-267234-waz0k0ms 82 5 motifs motif NNS cord-267234-waz0k0ms 82 6 are be VBP cord-267234-waz0k0ms 82 7 essential essential JJ cord-267234-waz0k0ms 82 8 for for IN cord-267234-waz0k0ms 82 9 interacting interact VBG cord-267234-waz0k0ms 82 10 with with IN cord-267234-waz0k0ms 82 11 Ca Ca NNP cord-267234-waz0k0ms 82 12 2 2 CD cord-267234-waz0k0ms 82 13 + + SYM cord-267234-waz0k0ms 82 14 for for IN cord-267234-waz0k0ms 82 15 recognizing recognize VBG cord-267234-waz0k0ms 82 16 carbohydrate carbohydrate NN cord-267234-waz0k0ms 82 17 ligand ligand NN cord-267234-waz0k0ms 83 1 ( ( -LRB- cord-267234-waz0k0ms 83 2 Khoo Khoo NNP cord-267234-waz0k0ms 83 3 et et NNP cord-267234-waz0k0ms 83 4 al al NNP cord-267234-waz0k0ms 83 5 . . NNP cord-267234-waz0k0ms 83 6 , , , cord-267234-waz0k0ms 83 7 2008 2008 CD cord-267234-waz0k0ms 83 8 ) ) -RRB- cord-267234-waz0k0ms 83 9 . . . cord-267234-waz0k0ms 84 1 The the DT cord-267234-waz0k0ms 84 2 tri tri JJ cord-267234-waz0k0ms 84 3 - - JJ cord-267234-waz0k0ms 84 4 acidic acidic JJ cord-267234-waz0k0ms 84 5 cluster cluster NN cord-267234-waz0k0ms 84 6 is be VBZ cord-267234-waz0k0ms 84 7 con con NN cord-267234-waz0k0ms 84 8 - - VBN cord-267234-waz0k0ms 84 9 served serve VBN cord-267234-waz0k0ms 84 10 in in IN cord-267234-waz0k0ms 84 11 human human JJ cord-267234-waz0k0ms 84 12 DC DC NNP cord-267234-waz0k0ms 84 13 - - HYPH cord-267234-waz0k0ms 84 14 SIGN SIGN NNP cord-267234-waz0k0ms 84 15 ( ( -LRB- cord-267234-waz0k0ms 84 16 Svajger Svajger NNP cord-267234-waz0k0ms 84 17 et et NNP cord-267234-waz0k0ms 84 18 al al NNP cord-267234-waz0k0ms 84 19 . . NNP cord-267234-waz0k0ms 84 20 , , , cord-267234-waz0k0ms 84 21 2010 2010 CD cord-267234-waz0k0ms 84 22 ) ) -RRB- cord-267234-waz0k0ms 84 23 and and CC cord-267234-waz0k0ms 84 24 L l NN cord-267234-waz0k0ms 84 25 - - HYPH cord-267234-waz0k0ms 84 26 SIGN sign NN cord-267234-waz0k0ms 85 1 ( ( -LRB- cord-267234-waz0k0ms 85 2 Koppel Koppel NNP cord-267234-waz0k0ms 85 3 et et NNP cord-267234-waz0k0ms 85 4 al al NNP cord-267234-waz0k0ms 85 5 . . NNP cord-267234-waz0k0ms 85 6 , , , cord-267234-waz0k0ms 85 7 2005 2005 CD cord-267234-waz0k0ms 85 8 ) ) -RRB- cord-267234-waz0k0ms 85 9 , , , cord-267234-waz0k0ms 85 10 but but CC cord-267234-waz0k0ms 85 11 not not RB cord-267234-waz0k0ms 85 12 in in IN cord-267234-waz0k0ms 85 13 miiuy miiuy NNP cord-267234-waz0k0ms 85 14 croaker croaker NN cord-267234-waz0k0ms 85 15 . . . cord-267234-waz0k0ms 86 1 Mm Mm NNP cord-267234-waz0k0ms 86 2 - - HYPH cord-267234-waz0k0ms 86 3 DC DC NNP cord-267234-waz0k0ms 86 4 - - HYPH cord-267234-waz0k0ms 86 5 SIGN sign NN cord-267234-waz0k0ms 86 6 and and CC cord-267234-waz0k0ms 86 7 mm mm NN cord-267234-waz0k0ms 87 1 -L -L : cord-267234-waz0k0ms 87 2 - - : cord-267234-waz0k0ms 87 3 SIGN sign VB cord-267234-waz0k0ms 87 4 both both DT cord-267234-waz0k0ms 87 5 have have VBP cord-267234-waz0k0ms 87 6 four four CD cord-267234-waz0k0ms 87 7 conserved conserve VBN cord-267234-waz0k0ms 87 8 cysteine cysteine NN cord-267234-waz0k0ms 87 9 residues residue NNS cord-267234-waz0k0ms 87 10 in in IN cord-267234-waz0k0ms 87 11 positions position NNS cord-267234-waz0k0ms 87 12 Cys102 cys102 CD cord-267234-waz0k0ms 87 13 , , , cord-267234-waz0k0ms 87 14 Cys181 Cys181 NNP cord-267234-waz0k0ms 87 15 , , , cord-267234-waz0k0ms 87 16 Cys196 Cys196 , cord-267234-waz0k0ms 87 17 , , , cord-267234-waz0k0ms 87 18 Cys204 Cys204 NNP cord-267234-waz0k0ms 87 19 and and CC cord-267234-waz0k0ms 87 20 positions position NNS cord-267234-waz0k0ms 88 1 Cys169 Cys169 NNS cord-267234-waz0k0ms 88 2 , , , cord-267234-waz0k0ms 88 3 Cys180 Cys180 NFP cord-267234-waz0k0ms 88 4 , , , cord-267234-waz0k0ms 88 5 Cys201 cys201 XX cord-267234-waz0k0ms 88 6 , , , cord-267234-waz0k0ms 88 7 Cys278 cys278 ADD cord-267234-waz0k0ms 88 8 to to TO cord-267234-waz0k0ms 88 9 form form VB cord-267234-waz0k0ms 88 10 the the DT cord-267234-waz0k0ms 88 11 internal internal JJ cord-267234-waz0k0ms 88 12 disulfide disulfide NN cord-267234-waz0k0ms 88 13 bridges bridge NNS cord-267234-waz0k0ms 88 14 revealed reveal VBN cord-267234-waz0k0ms 88 15 by by IN cord-267234-waz0k0ms 88 16 multiple multiple JJ cord-267234-waz0k0ms 88 17 sequence sequence NN cord-267234-waz0k0ms 88 18 alignment alignment NN cord-267234-waz0k0ms 88 19 which which WDT cord-267234-waz0k0ms 88 20 also also RB cord-267234-waz0k0ms 88 21 existed exist VBD cord-267234-waz0k0ms 88 22 in in IN cord-267234-waz0k0ms 88 23 other other JJ cord-267234-waz0k0ms 88 24 known know VBN cord-267234-waz0k0ms 88 25 DC DC NNP cord-267234-waz0k0ms 88 26 - - HYPH cord-267234-waz0k0ms 88 27 SIGN SIGN NNP cord-267234-waz0k0ms 88 28 and and CC cord-267234-waz0k0ms 88 29 L l NN cord-267234-waz0k0ms 88 30 - - HYPH cord-267234-waz0k0ms 88 31 SIGN sign NN cord-267234-waz0k0ms 88 32 sequences sequence NNS cord-267234-waz0k0ms 88 33 of of IN cord-267234-waz0k0ms 88 34 vertebrate vertebrate NN cord-267234-waz0k0ms 88 35 ( ( -LRB- cord-267234-waz0k0ms 88 36 Huang Huang NNP cord-267234-waz0k0ms 88 37 and and CC cord-267234-waz0k0ms 88 38 Meng Meng NNP cord-267234-waz0k0ms 88 39 , , , cord-267234-waz0k0ms 88 40 2009 2009 CD cord-267234-waz0k0ms 88 41 ; ; : cord-267234-waz0k0ms 88 42 Lin Lin NNP cord-267234-waz0k0ms 88 43 et et NNP cord-267234-waz0k0ms 88 44 al al NNP cord-267234-waz0k0ms 88 45 . . NNP cord-267234-waz0k0ms 88 46 , , , cord-267234-waz0k0ms 88 47 2009 2009 CD cord-267234-waz0k0ms 88 48 ) ) -RRB- cord-267234-waz0k0ms 88 49 . . . cord-267234-waz0k0ms 89 1 Miiuy Miiuy NNP cord-267234-waz0k0ms 89 2 croaker croaker NN cord-267234-waz0k0ms 89 3 DC DC NNP cord-267234-waz0k0ms 89 4 - - HYPH cord-267234-waz0k0ms 89 5 SIGN SIGN NNP cord-267234-waz0k0ms 89 6 and and CC cord-267234-waz0k0ms 89 7 L l NN cord-267234-waz0k0ms 89 8 - - HYPH cord-267234-waz0k0ms 89 9 SIGN SIGN NNP cord-267234-waz0k0ms 89 10 had have VBD cord-267234-waz0k0ms 89 11 the the DT cord-267234-waz0k0ms 89 12 same same JJ cord-267234-waz0k0ms 89 13 domains domain NNS cord-267234-waz0k0ms 89 14 with with IN cord-267234-waz0k0ms 89 15 other other JJ cord-267234-waz0k0ms 89 16 fish fish NN cord-267234-waz0k0ms 89 17 , , , cord-267234-waz0k0ms 89 18 amphibian amphibian NN cord-267234-waz0k0ms 89 19 and and CC cord-267234-waz0k0ms 89 20 bird bird NN cord-267234-waz0k0ms 89 21 that that WDT cord-267234-waz0k0ms 89 22 showed show VBD cord-267234-waz0k0ms 89 23 both both DT cord-267234-waz0k0ms 89 24 DC DC NNP cord-267234-waz0k0ms 89 25 - - HYPH cord-267234-waz0k0ms 89 26 SIGN SIGN NNP cord-267234-waz0k0ms 89 27 and and CC cord-267234-waz0k0ms 89 28 L l NN cord-267234-waz0k0ms 89 29 - - HYPH cord-267234-waz0k0ms 89 30 SIGN SIGN NNP cord-267234-waz0k0ms 89 31 had have VBD cord-267234-waz0k0ms 89 32 conserved conserve VBN cord-267234-waz0k0ms 89 33 domains domain NNS cord-267234-waz0k0ms 89 34 from from IN cord-267234-waz0k0ms 89 35 fish fish NN cord-267234-waz0k0ms 89 36 to to IN cord-267234-waz0k0ms 89 37 mammals mammal NNS cord-267234-waz0k0ms 89 38 except except IN cord-267234-waz0k0ms 89 39 primates primate NNS cord-267234-waz0k0ms 89 40 . . . cord-267234-waz0k0ms 90 1 Interestingly interestingly RB cord-267234-waz0k0ms 90 2 , , , cord-267234-waz0k0ms 90 3 when when WRB cord-267234-waz0k0ms 90 4 we -PRON- PRP cord-267234-waz0k0ms 90 5 analyzed analyze VBD cord-267234-waz0k0ms 90 6 genomic genomic JJ cord-267234-waz0k0ms 90 7 synteny synteny NN cord-267234-waz0k0ms 90 8 of of IN cord-267234-waz0k0ms 90 9 L l NN cord-267234-waz0k0ms 90 10 - - HYPH cord-267234-waz0k0ms 90 11 SIGN sign NN cord-267234-waz0k0ms 90 12 in in IN cord-267234-waz0k0ms 90 13 teleost teleost NN cord-267234-waz0k0ms 90 14 , , , cord-267234-waz0k0ms 90 15 one one CD cord-267234-waz0k0ms 90 16 gene gene NN cord-267234-waz0k0ms 90 17 next next RB cord-267234-waz0k0ms 90 18 to to IN cord-267234-waz0k0ms 90 19 L L NNP cord-267234-waz0k0ms 90 20 - - HYPH cord-267234-waz0k0ms 90 21 SIGN SIGN NNP cord-267234-waz0k0ms 90 22 which which WDT cord-267234-waz0k0ms 90 23 has have VBZ cord-267234-waz0k0ms 90 24 high high JJ cord-267234-waz0k0ms 90 25 similarity similarity NN cord-267234-waz0k0ms 90 26 with with IN cord-267234-waz0k0ms 90 27 L l NN cord-267234-waz0k0ms 90 28 - - HYPH cord-267234-waz0k0ms 90 29 SIGN sign NN cord-267234-waz0k0ms 90 30 gene gene NN cord-267234-waz0k0ms 90 31 and and CC cord-267234-waz0k0ms 90 32 clustered cluster VBN cord-267234-waz0k0ms 90 33 with with IN cord-267234-waz0k0ms 90 34 L l NN cord-267234-waz0k0ms 90 35 - - HYPH cord-267234-waz0k0ms 90 36 SIGN sign NN cord-267234-waz0k0ms 90 37 in in IN cord-267234-waz0k0ms 90 38 the the DT cord-267234-waz0k0ms 90 39 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 90 40 tree tree NN cord-267234-waz0k0ms 90 41 of of IN cord-267234-waz0k0ms 90 42 CLRs clr NNS cord-267234-waz0k0ms 91 1 ( ( -LRB- cord-267234-waz0k0ms 91 2 Fig Fig NNP cord-267234-waz0k0ms 91 3 . . . cord-267234-waz0k0ms 91 4 2A 2a CD cord-267234-waz0k0ms 91 5 ) ) -RRB- cord-267234-waz0k0ms 91 6 was be VBD cord-267234-waz0k0ms 91 7 named name VBN cord-267234-waz0k0ms 91 8 as as IN cord-267234-waz0k0ms 91 9 L l NN cord-267234-waz0k0ms 91 10 - - HYPH cord-267234-waz0k0ms 91 11 SIGN sign NN cord-267234-waz0k0ms 91 12 - - HYPH cord-267234-waz0k0ms 91 13 like like JJ cord-267234-waz0k0ms 91 14 gene gene NN cord-267234-waz0k0ms 91 15 tentatively tentatively RB cord-267234-waz0k0ms 91 16 . . . cord-267234-waz0k0ms 92 1 L l NN cord-267234-waz0k0ms 92 2 - - HYPH cord-267234-waz0k0ms 92 3 SIGN sign NN cord-267234-waz0k0ms 92 4 - - HYPH cord-267234-waz0k0ms 92 5 like like JJ cord-267234-waz0k0ms 92 6 gene gene NN cord-267234-waz0k0ms 92 7 was be VBD cord-267234-waz0k0ms 92 8 obtained obtain VBN cord-267234-waz0k0ms 92 9 from from IN cord-267234-waz0k0ms 92 10 miiuy miiuy NNP cord-267234-waz0k0ms 92 11 croaker croaker NNP cord-267234-waz0k0ms 92 12 , , , cord-267234-waz0k0ms 92 13 tilapia tilapia NN cord-267234-waz0k0ms 92 14 , , , cord-267234-waz0k0ms 92 15 medaka medaka NN cord-267234-waz0k0ms 92 16 , , , cord-267234-waz0k0ms 92 17 Table Table NNP cord-267234-waz0k0ms 92 18 S3 S3 NNP cord-267234-waz0k0ms 92 19 . . . cord-267234-waz0k0ms 93 1 stickleback stickleback NN cord-267234-waz0k0ms 93 2 from from IN cord-267234-waz0k0ms 93 3 the the DT cord-267234-waz0k0ms 93 4 genome genome NN cord-267234-waz0k0ms 93 5 databases database NNS cord-267234-waz0k0ms 93 6 . . . cord-267234-waz0k0ms 94 1 Meanwhile meanwhile RB cord-267234-waz0k0ms 94 2 , , , cord-267234-waz0k0ms 94 3 only only RB cord-267234-waz0k0ms 94 4 one one CD cord-267234-waz0k0ms 94 5 L l NN cord-267234-waz0k0ms 94 6 - - HYPH cord-267234-waz0k0ms 94 7 SIGN sign NN cord-267234-waz0k0ms 94 8 gene gene NN cord-267234-waz0k0ms 94 9 existed exist VBD cord-267234-waz0k0ms 94 10 in in IN cord-267234-waz0k0ms 94 11 human human JJ cord-267234-waz0k0ms 94 12 , , , cord-267234-waz0k0ms 94 13 chimpanzee chimpanzee NN cord-267234-waz0k0ms 94 14 , , , cord-267234-waz0k0ms 94 15 rat rat NN cord-267234-waz0k0ms 94 16 and and CC cord-267234-waz0k0ms 94 17 xenopus xenopus NNP cord-267234-waz0k0ms 94 18 known know VBN cord-267234-waz0k0ms 94 19 from from IN cord-267234-waz0k0ms 94 20 genome genome NN cord-267234-waz0k0ms 94 21 databases database NNS cord-267234-waz0k0ms 94 22 in in IN cord-267234-waz0k0ms 94 23 Ensemble Ensemble NNP cord-267234-waz0k0ms 94 24 , , , cord-267234-waz0k0ms 94 25 but but CC cord-267234-waz0k0ms 94 26 there there EX cord-267234-waz0k0ms 94 27 are be VBP cord-267234-waz0k0ms 94 28 L l NN cord-267234-waz0k0ms 94 29 - - HYPH cord-267234-waz0k0ms 94 30 SIGN sign NN cord-267234-waz0k0ms 94 31 and and CC cord-267234-waz0k0ms 94 32 L l NN cord-267234-waz0k0ms 94 33 - - HYPH cord-267234-waz0k0ms 94 34 SIGNlike signlike JJ cord-267234-waz0k0ms 94 35 in in IN cord-267234-waz0k0ms 94 36 some some DT cord-267234-waz0k0ms 94 37 fishes fish NNS cord-267234-waz0k0ms 94 38 maybe maybe RB cord-267234-waz0k0ms 94 39 in in IN cord-267234-waz0k0ms 94 40 consequence consequence NN cord-267234-waz0k0ms 94 41 of of IN cord-267234-waz0k0ms 94 42 the the DT cord-267234-waz0k0ms 94 43 fish fish NN cord-267234-waz0k0ms 94 44 - - HYPH cord-267234-waz0k0ms 94 45 specific specific JJ cord-267234-waz0k0ms 94 46 genome genome NN cord-267234-waz0k0ms 94 47 duplication duplication NN cord-267234-waz0k0ms 94 48 ( ( -LRB- cord-267234-waz0k0ms 94 49 FSGD FSGD NNP cord-267234-waz0k0ms 94 50 or or CC cord-267234-waz0k0ms 94 51 3R 3R NNP cord-267234-waz0k0ms 94 52 ) ) -RRB- cord-267234-waz0k0ms 94 53 to to TO cord-267234-waz0k0ms 94 54 adapt adapt VB cord-267234-waz0k0ms 94 55 to to IN cord-267234-waz0k0ms 94 56 the the DT cord-267234-waz0k0ms 94 57 specific specific JJ cord-267234-waz0k0ms 94 58 environment environment NN cord-267234-waz0k0ms 94 59 . . . cord-267234-waz0k0ms 95 1 Only only RB cord-267234-waz0k0ms 95 2 one one CD cord-267234-waz0k0ms 95 3 L l NN cord-267234-waz0k0ms 95 4 - - HYPH cord-267234-waz0k0ms 95 5 SIGN SIGN NNP cord-267234-waz0k0ms 95 6 was be VBD cord-267234-waz0k0ms 95 7 found find VBN cord-267234-waz0k0ms 95 8 in in IN cord-267234-waz0k0ms 95 9 platyfish platyfish NN cord-267234-waz0k0ms 95 10 maybe maybe RB cord-267234-waz0k0ms 95 11 because because IN cord-267234-waz0k0ms 95 12 the the DT cord-267234-waz0k0ms 95 13 L l NN cord-267234-waz0k0ms 95 14 - - HYPH cord-267234-waz0k0ms 95 15 SIGN sign NN cord-267234-waz0k0ms 95 16 - - HYPH cord-267234-waz0k0ms 95 17 like like JJ cord-267234-waz0k0ms 95 18 gene gene NN cord-267234-waz0k0ms 95 19 was be VBD cord-267234-waz0k0ms 95 20 lost lose VBN cord-267234-waz0k0ms 95 21 after after IN cord-267234-waz0k0ms 95 22 L l NN cord-267234-waz0k0ms 95 23 - - HYPH cord-267234-waz0k0ms 95 24 SIGN sign NN cord-267234-waz0k0ms 95 25 duplicated duplicate VBN cord-267234-waz0k0ms 95 26 in in IN cord-267234-waz0k0ms 95 27 platyfish platyfish NN cord-267234-waz0k0ms 95 28 ( ( -LRB- cord-267234-waz0k0ms 95 29 Fig Fig NNP cord-267234-waz0k0ms 95 30 . . . cord-267234-waz0k0ms 95 31 2B 2b CD cord-267234-waz0k0ms 95 32 ) ) -RRB- cord-267234-waz0k0ms 95 33 . . . cord-267234-waz0k0ms 96 1 The the DT cord-267234-waz0k0ms 96 2 L l NN cord-267234-waz0k0ms 96 3 - - HYPH cord-267234-waz0k0ms 96 4 SIGN sign NN cord-267234-waz0k0ms 96 5 - - HYPH cord-267234-waz0k0ms 96 6 like like JJ cord-267234-waz0k0ms 96 7 genes gene NNS cord-267234-waz0k0ms 96 8 with with IN cord-267234-waz0k0ms 96 9 L l NN cord-267234-waz0k0ms 96 10 - - HYPH cord-267234-waz0k0ms 96 11 SIGN sign NN cord-267234-waz0k0ms 96 12 genes gene NNS cord-267234-waz0k0ms 96 13 formed form VBD cord-267234-waz0k0ms 96 14 a a DT cord-267234-waz0k0ms 96 15 cluster cluster NN cord-267234-waz0k0ms 96 16 that that WDT cord-267234-waz0k0ms 96 17 the the DT cord-267234-waz0k0ms 96 18 genes gene NNS cord-267234-waz0k0ms 96 19 were be VBD cord-267234-waz0k0ms 96 20 located locate VBN cord-267234-waz0k0ms 96 21 in in IN cord-267234-waz0k0ms 96 22 scaffold scaffold NN cord-267234-waz0k0ms 96 23 59 59 CD cord-267234-waz0k0ms 96 24 , , , cord-267234-waz0k0ms 96 25 scaffold scaffold NN cord-267234-waz0k0ms 96 26 GL831260.1 gl831260.1 NN cord-267234-waz0k0ms 96 27 , , , cord-267234-waz0k0ms 96 28 chromosome chromosome NN cord-267234-waz0k0ms 96 29 22 22 CD cord-267234-waz0k0ms 96 30 , , , cord-267234-waz0k0ms 96 31 scaffold scaffold NN cord-267234-waz0k0ms 96 32 JH556680.1 JH556680.1 NNP cord-267234-waz0k0ms 96 33 , , , cord-267234-waz0k0ms 96 34 and and CC cord-267234-waz0k0ms 96 35 group group NN cord-267234-waz0k0ms 96 36 XV XV NNP cord-267234-waz0k0ms 96 37 in in IN cord-267234-waz0k0ms 96 38 miiuy miiuy NNP cord-267234-waz0k0ms 96 39 croaker croaker NN cord-267234-waz0k0ms 96 40 , , , cord-267234-waz0k0ms 96 41 tilapia tilapia NN cord-267234-waz0k0ms 96 42 , , , cord-267234-waz0k0ms 96 43 medaka medaka NN cord-267234-waz0k0ms 96 44 , , , cord-267234-waz0k0ms 96 45 platyfish platyfish NN cord-267234-waz0k0ms 96 46 and and CC cord-267234-waz0k0ms 96 47 stickleback stickleback NN cord-267234-waz0k0ms 96 48 genomes genome NNS cord-267234-waz0k0ms 96 49 separately separately RB cord-267234-waz0k0ms 96 50 . . . cord-267234-waz0k0ms 97 1 Sequence sequence NN cord-267234-waz0k0ms 97 2 alignment alignment NN cord-267234-waz0k0ms 97 3 of of IN cord-267234-waz0k0ms 97 4 L l NN cord-267234-waz0k0ms 97 5 - - HYPH cord-267234-waz0k0ms 97 6 SIGN SIGN NNP cord-267234-waz0k0ms 97 7 and and CC cord-267234-waz0k0ms 97 8 L l NN cord-267234-waz0k0ms 97 9 - - HYPH cord-267234-waz0k0ms 97 10 SIGN sign NN cord-267234-waz0k0ms 97 11 - - HYPH cord-267234-waz0k0ms 97 12 like like JJ cord-267234-waz0k0ms 97 13 from from IN cord-267234-waz0k0ms 97 14 several several JJ cord-267234-waz0k0ms 97 15 fishes fish NNS cord-267234-waz0k0ms 97 16 was be VBD cord-267234-waz0k0ms 97 17 carried carry VBN cord-267234-waz0k0ms 97 18 out out RP cord-267234-waz0k0ms 97 19 by by IN cord-267234-waz0k0ms 97 20 DNAman DNAman NNP cord-267234-waz0k0ms 97 21 software software NN cord-267234-waz0k0ms 97 22 to to TO cord-267234-waz0k0ms 97 23 show show VB cord-267234-waz0k0ms 97 24 that that IN cord-267234-waz0k0ms 97 25 L l NN cord-267234-waz0k0ms 97 26 - - HYPH cord-267234-waz0k0ms 97 27 SIGN sign NN cord-267234-waz0k0ms 97 28 - - HYPH cord-267234-waz0k0ms 97 29 like like JJ cord-267234-waz0k0ms 97 30 shared share VBN cord-267234-waz0k0ms 97 31 high high JJ cord-267234-waz0k0ms 97 32 similarity similarity NN cord-267234-waz0k0ms 97 33 with with IN cord-267234-waz0k0ms 97 34 L l NN cord-267234-waz0k0ms 97 35 - - HYPH cord-267234-waz0k0ms 97 36 SIGN sign NN cord-267234-waz0k0ms 97 37 genes gene NNS cord-267234-waz0k0ms 97 38 containing contain VBG cord-267234-waz0k0ms 97 39 conserved conserve VBN cord-267234-waz0k0ms 97 40 cysteine cysteine NN cord-267234-waz0k0ms 97 41 residues residue NNS cord-267234-waz0k0ms 97 42 , , , cord-267234-waz0k0ms 97 43 a a DT cord-267234-waz0k0ms 97 44 relatively relatively RB cord-267234-waz0k0ms 97 45 conservative conservative JJ cord-267234-waz0k0ms 97 46 EPN EPN NNP cord-267234-waz0k0ms 97 47 , , , cord-267234-waz0k0ms 97 48 WND WND NNP cord-267234-waz0k0ms 97 49 motifs motif NNS cord-267234-waz0k0ms 97 50 ( ( -LRB- cord-267234-waz0k0ms 97 51 Fig Fig NNP cord-267234-waz0k0ms 97 52 . . . cord-267234-waz0k0ms 97 53 1E 1E NNP cord-267234-waz0k0ms 97 54 ) ) -RRB- cord-267234-waz0k0ms 97 55 . . . cord-267234-waz0k0ms 98 1 This this DT cord-267234-waz0k0ms 98 2 finding finding NN cord-267234-waz0k0ms 98 3 provide provide VBP cord-267234-waz0k0ms 98 4 more more JJR cord-267234-waz0k0ms 98 5 information information NN cord-267234-waz0k0ms 98 6 to to TO cord-267234-waz0k0ms 98 7 reveal reveal VB cord-267234-waz0k0ms 98 8 the the DT cord-267234-waz0k0ms 98 9 adaptive adaptive JJ cord-267234-waz0k0ms 98 10 evolution evolution NN cord-267234-waz0k0ms 98 11 and and CC cord-267234-waz0k0ms 98 12 selection selection NN cord-267234-waz0k0ms 98 13 of of IN cord-267234-waz0k0ms 98 14 L l NN cord-267234-waz0k0ms 98 15 - - HYPH cord-267234-waz0k0ms 98 16 SIGN sign NN cord-267234-waz0k0ms 98 17 genes gene NNS cord-267234-waz0k0ms 98 18 . . . cord-267234-waz0k0ms 99 1 Information information NN cord-267234-waz0k0ms 99 2 from from IN cord-267234-waz0k0ms 99 3 genome genome NN cord-267234-waz0k0ms 99 4 was be VBD cord-267234-waz0k0ms 99 5 used use VBN cord-267234-waz0k0ms 99 6 to to TO cord-267234-waz0k0ms 99 7 analyze analyze VB cord-267234-waz0k0ms 99 8 genomic genomic JJ cord-267234-waz0k0ms 99 9 synteny synteny NN cord-267234-waz0k0ms 99 10 of of IN cord-267234-waz0k0ms 99 11 mmDC mmdc NN cord-267234-waz0k0ms 99 12 - - HYPH cord-267234-waz0k0ms 99 13 SIGN sign NN cord-267234-waz0k0ms 100 1 ( ( -LRB- cord-267234-waz0k0ms 100 2 Fig Fig NNP cord-267234-waz0k0ms 100 3 . . . cord-267234-waz0k0ms 100 4 1F 1F NNP cord-267234-waz0k0ms 100 5 ) ) -RRB- cord-267234-waz0k0ms 100 6 and and CC cord-267234-waz0k0ms 100 7 L l NN cord-267234-waz0k0ms 100 8 - - HYPH cord-267234-waz0k0ms 100 9 SIGN sign NN cord-267234-waz0k0ms 100 10 among among IN cord-267234-waz0k0ms 100 11 several several JJ cord-267234-waz0k0ms 100 12 fishes fish NNS cord-267234-waz0k0ms 100 13 ( ( -LRB- cord-267234-waz0k0ms 100 14 Fig fig NN cord-267234-waz0k0ms 100 15 . . . cord-267234-waz0k0ms 100 16 1 1 CD cord-267234-waz0k0ms 100 17 G g NN cord-267234-waz0k0ms 100 18 ) ) -RRB- cord-267234-waz0k0ms 101 1 to to TO cord-267234-waz0k0ms 101 2 extend extend VB cord-267234-waz0k0ms 101 3 their -PRON- PRP$ cord-267234-waz0k0ms 101 4 evolutionary evolutionary JJ cord-267234-waz0k0ms 101 5 analysis analysis NN cord-267234-waz0k0ms 101 6 . . . cord-267234-waz0k0ms 102 1 We -PRON- PRP cord-267234-waz0k0ms 102 2 confirmed confirm VBD cord-267234-waz0k0ms 102 3 mmDC mmdc NN cord-267234-waz0k0ms 102 4 - - HYPH cord-267234-waz0k0ms 102 5 SIGN sign NN cord-267234-waz0k0ms 102 6 located locate VBN cord-267234-waz0k0ms 102 7 in in IN cord-267234-waz0k0ms 102 8 scaffold scaffold NN cord-267234-waz0k0ms 102 9 2 2 CD cord-267234-waz0k0ms 102 10 and and CC cord-267234-waz0k0ms 102 11 mmL mml JJ cord-267234-waz0k0ms 102 12 - - HYPH cord-267234-waz0k0ms 102 13 SIGN sign NN cord-267234-waz0k0ms 102 14 located locate VBN cord-267234-waz0k0ms 102 15 in in IN cord-267234-waz0k0ms 102 16 scaffold scaffold NN cord-267234-waz0k0ms 102 17 59 59 CD cord-267234-waz0k0ms 102 18 of of IN cord-267234-waz0k0ms 102 19 miiuy miiuy NNP cord-267234-waz0k0ms 102 20 croaker croaker NNP cord-267234-waz0k0ms 102 21 genome genome NN cord-267234-waz0k0ms 102 22 , , , cord-267234-waz0k0ms 102 23 and and CC cord-267234-waz0k0ms 102 24 also also RB cord-267234-waz0k0ms 102 25 confirmed confirm VBD cord-267234-waz0k0ms 102 26 some some DT cord-267234-waz0k0ms 102 27 genes gene NNS cord-267234-waz0k0ms 102 28 surrounding surround VBG cord-267234-waz0k0ms 102 29 mmDC mmdc NN cord-267234-waz0k0ms 102 30 - - HYPH cord-267234-waz0k0ms 102 31 SIGN sign NN cord-267234-waz0k0ms 102 32 and and CC cord-267234-waz0k0ms 102 33 mmL mml NN cord-267234-waz0k0ms 102 34 - - HYPH cord-267234-waz0k0ms 102 35 SIGN sign NN cord-267234-waz0k0ms 102 36 to to TO cord-267234-waz0k0ms 102 37 propose propose VB cord-267234-waz0k0ms 102 38 a a DT cord-267234-waz0k0ms 102 39 linear linear JJ cord-267234-waz0k0ms 102 40 framework framework NN cord-267234-waz0k0ms 102 41 of of IN cord-267234-waz0k0ms 102 42 DC DC NNP cord-267234-waz0k0ms 102 43 - - HYPH cord-267234-waz0k0ms 102 44 SIGN SIGN NNP cord-267234-waz0k0ms 102 45 and and CC cord-267234-waz0k0ms 102 46 L l NN cord-267234-waz0k0ms 102 47 - - HYPH cord-267234-waz0k0ms 102 48 SIGN sign NN cord-267234-waz0k0ms 102 49 in in IN cord-267234-waz0k0ms 102 50 teleost teleost NN cord-267234-waz0k0ms 102 51 ( ( -LRB- cord-267234-waz0k0ms 102 52 Fig fig NN cord-267234-waz0k0ms 102 53 . . . cord-267234-waz0k0ms 103 1 1F 1F NNP cord-267234-waz0k0ms 103 2 , , , cord-267234-waz0k0ms 103 3 G G NNP cord-267234-waz0k0ms 103 4 ) ) -RRB- cord-267234-waz0k0ms 103 5 which which WDT cord-267234-waz0k0ms 103 6 showed show VBD cord-267234-waz0k0ms 103 7 mmDC mmdc NN cord-267234-waz0k0ms 103 8 - - HYPH cord-267234-waz0k0ms 103 9 SIGN sign NN cord-267234-waz0k0ms 103 10 located locate VBN cord-267234-waz0k0ms 103 11 between between IN cord-267234-waz0k0ms 103 12 CLEC4E CLEC4E NNP cord-267234-waz0k0ms 103 13 and and CC cord-267234-waz0k0ms 103 14 CD4 CD4 NNP cord-267234-waz0k0ms 103 15 and and CC cord-267234-waz0k0ms 103 16 no no DT cord-267234-waz0k0ms 103 17 ZNF557 ZNF557 NNP cord-267234-waz0k0ms 103 18 , , , cord-267234-waz0k0ms 103 19 ZNF358 ZNF358 NNP cord-267234-waz0k0ms 103 20 and and CC cord-267234-waz0k0ms 103 21 LRRC8E LRRC8E NNP cord-267234-waz0k0ms 103 22 genes gene NNS cord-267234-waz0k0ms 103 23 surrounding surround VBG cord-267234-waz0k0ms 103 24 the the DT cord-267234-waz0k0ms 103 25 mmDC mmdc NN cord-267234-waz0k0ms 103 26 - - HYPH cord-267234-waz0k0ms 103 27 SIGN sign NN cord-267234-waz0k0ms 103 28 which which WDT cord-267234-waz0k0ms 103 29 surrounded surround VBD cord-267234-waz0k0ms 103 30 DC DC NNP cord-267234-waz0k0ms 103 31 - - HYPH cord-267234-waz0k0ms 103 32 SIGN SIGN NNP cord-267234-waz0k0ms 103 33 in in IN cord-267234-waz0k0ms 103 34 a a DT cord-267234-waz0k0ms 103 35 chromosome chromosome NN cord-267234-waz0k0ms 103 36 of of IN cord-267234-waz0k0ms 103 37 human human NN cord-267234-waz0k0ms 103 38 and and CC cord-267234-waz0k0ms 103 39 zebrafish zebrafish NN cord-267234-waz0k0ms 103 40 separately separately RB cord-267234-waz0k0ms 104 1 ( ( -LRB- cord-267234-waz0k0ms 104 2 Lin Lin NNP cord-267234-waz0k0ms 104 3 et et NNP cord-267234-waz0k0ms 104 4 al al NNP cord-267234-waz0k0ms 104 5 . . NNP cord-267234-waz0k0ms 104 6 , , , cord-267234-waz0k0ms 104 7 2009 2009 CD cord-267234-waz0k0ms 104 8 ) ) -RRB- cord-267234-waz0k0ms 104 9 . . . cord-267234-waz0k0ms 105 1 Miiuy Miiuy NNP cord-267234-waz0k0ms 105 2 croaker croaker NN cord-267234-waz0k0ms 105 3 L L NNP cord-267234-waz0k0ms 105 4 - - HYPH cord-267234-waz0k0ms 105 5 SIGN SIGN NNP cord-267234-waz0k0ms 105 6 was be VBD cord-267234-waz0k0ms 105 7 located locate VBN cord-267234-waz0k0ms 105 8 between between IN cord-267234-waz0k0ms 105 9 L l NN cord-267234-waz0k0ms 105 10 - - HYPH cord-267234-waz0k0ms 105 11 SIGN sign NN cord-267234-waz0k0ms 105 12 - - HYPH cord-267234-waz0k0ms 105 13 like like JJ cord-267234-waz0k0ms 105 14 and and CC cord-267234-waz0k0ms 105 15 TTC8 TTC8 NNP cord-267234-waz0k0ms 105 16 , , , cord-267234-waz0k0ms 105 17 and and CC cord-267234-waz0k0ms 105 18 also also RB cord-267234-waz0k0ms 105 19 differences difference NNS cord-267234-waz0k0ms 105 20 happened happen VBD cord-267234-waz0k0ms 105 21 among among IN cord-267234-waz0k0ms 105 22 the the DT cord-267234-waz0k0ms 105 23 linear linear JJ cord-267234-waz0k0ms 105 24 organization organization NN cord-267234-waz0k0ms 105 25 of of IN cord-267234-waz0k0ms 105 26 the the DT cord-267234-waz0k0ms 105 27 five five CD cord-267234-waz0k0ms 105 28 fishes fish NNS cord-267234-waz0k0ms 105 29 in in IN cord-267234-waz0k0ms 105 30 basic basic JJ cord-267234-waz0k0ms 105 31 chromosome chromosome NN cord-267234-waz0k0ms 105 32 number number NN cord-267234-waz0k0ms 105 33 and and CC cord-267234-waz0k0ms 105 34 the the DT cord-267234-waz0k0ms 105 35 amount amount NN cord-267234-waz0k0ms 105 36 of of IN cord-267234-waz0k0ms 105 37 surrounding surround VBG cord-267234-waz0k0ms 105 38 genes gene NNS cord-267234-waz0k0ms 105 39 . . . cord-267234-waz0k0ms 106 1 Both both DT cord-267234-waz0k0ms 106 2 miiuy miiuy NNP cord-267234-waz0k0ms 106 3 croaker croaker NN cord-267234-waz0k0ms 106 4 and and CC cord-267234-waz0k0ms 106 5 tilapia tilapia NN cord-267234-waz0k0ms 106 6 formed form VBD cord-267234-waz0k0ms 106 7 a a DT cord-267234-waz0k0ms 106 8 cluster cluster NN cord-267234-waz0k0ms 106 9 containing contain VBG cord-267234-waz0k0ms 106 10 five five CD cord-267234-waz0k0ms 106 11 C c NN cord-267234-waz0k0ms 106 12 - - HYPH cord-267234-waz0k0ms 106 13 type type NN cord-267234-waz0k0ms 106 14 lectin lectin NN cord-267234-waz0k0ms 106 15 receptors receptor NNS cord-267234-waz0k0ms 106 16 , , , cord-267234-waz0k0ms 106 17 but but CC cord-267234-waz0k0ms 106 18 only only RB cord-267234-waz0k0ms 106 19 two two CD cord-267234-waz0k0ms 106 20 C c NN cord-267234-waz0k0ms 106 21 - - HYPH cord-267234-waz0k0ms 106 22 type type NN cord-267234-waz0k0ms 106 23 lectin lectin NN cord-267234-waz0k0ms 106 24 receptors receptor NNS cord-267234-waz0k0ms 106 25 were be VBD cord-267234-waz0k0ms 106 26 clustered cluster VBN cord-267234-waz0k0ms 106 27 together together RB cord-267234-waz0k0ms 106 28 in in IN cord-267234-waz0k0ms 106 29 other other JJ cord-267234-waz0k0ms 106 30 three three CD cord-267234-waz0k0ms 106 31 fishes fish NNS cord-267234-waz0k0ms 106 32 . . . cord-267234-waz0k0ms 107 1 There there EX cord-267234-waz0k0ms 107 2 was be VBD cord-267234-waz0k0ms 107 3 one one CD cord-267234-waz0k0ms 107 4 L l NN cord-267234-waz0k0ms 107 5 - - HYPH cord-267234-waz0k0ms 107 6 SIGN sign NN cord-267234-waz0k0ms 107 7 and and CC cord-267234-waz0k0ms 107 8 one one CD cord-267234-waz0k0ms 107 9 L l NN cord-267234-waz0k0ms 107 10 - - HYPH cord-267234-waz0k0ms 107 11 SIGN sign NN cord-267234-waz0k0ms 107 12 - - HYPH cord-267234-waz0k0ms 107 13 like like JJ cord-267234-waz0k0ms 107 14 in in IN cord-267234-waz0k0ms 107 15 four four CD cord-267234-waz0k0ms 107 16 fishes fish NNS cord-267234-waz0k0ms 107 17 except except IN cord-267234-waz0k0ms 107 18 platyfish platyfish NN cord-267234-waz0k0ms 108 1 ( ( -LRB- cord-267234-waz0k0ms 108 2 Fig Fig NNP cord-267234-waz0k0ms 108 3 . . . cord-267234-waz0k0ms 108 4 1 1 CD cord-267234-waz0k0ms 108 5 G g NN cord-267234-waz0k0ms 108 6 ) ) -RRB- cord-267234-waz0k0ms 108 7 . . . cord-267234-waz0k0ms 109 1 Among among IN cord-267234-waz0k0ms 109 2 these these DT cord-267234-waz0k0ms 109 3 fish fish NN cord-267234-waz0k0ms 109 4 genomes genome NNS cord-267234-waz0k0ms 109 5 , , , cord-267234-waz0k0ms 109 6 genes gene NNS cord-267234-waz0k0ms 109 7 from from IN cord-267234-waz0k0ms 109 8 TTC8 TTC8 NNP cord-267234-waz0k0ms 109 9 to to IN cord-267234-waz0k0ms 109 10 ENTPD5 entpd5 NN cord-267234-waz0k0ms 109 11 located locate VBN cord-267234-waz0k0ms 109 12 downstream downstream RB cord-267234-waz0k0ms 109 13 of of IN cord-267234-waz0k0ms 109 14 L l NN cord-267234-waz0k0ms 109 15 - - HYPH cord-267234-waz0k0ms 109 16 SIGN SIGN NNP cord-267234-waz0k0ms 109 17 had have VBD cord-267234-waz0k0ms 109 18 conserved conserve VBN cord-267234-waz0k0ms 109 19 synteny synteny NN cord-267234-waz0k0ms 109 20 only only RB cord-267234-waz0k0ms 109 21 differing differ VBG cord-267234-waz0k0ms 109 22 in in IN cord-267234-waz0k0ms 109 23 no no DT cord-267234-waz0k0ms 109 24 RABEPK RABEPK NNP cord-267234-waz0k0ms 109 25 gene gene NN cord-267234-waz0k0ms 109 26 in in IN cord-267234-waz0k0ms 109 27 miiuy miiuy NNP cord-267234-waz0k0ms 109 28 croaker croaker NN cord-267234-waz0k0ms 109 29 and and CC cord-267234-waz0k0ms 109 30 no no DT cord-267234-waz0k0ms 109 31 RABEPK rabepk NN cord-267234-waz0k0ms 109 32 and and CC cord-267234-waz0k0ms 109 33 ALDH6A1 ALDH6A1 NNP cord-267234-waz0k0ms 109 34 in in IN cord-267234-waz0k0ms 109 35 stickleback stickleback NN cord-267234-waz0k0ms 109 36 . . . cord-267234-waz0k0ms 110 1 Upstream Upstream NNP cord-267234-waz0k0ms 110 2 of of IN cord-267234-waz0k0ms 110 3 L l NN cord-267234-waz0k0ms 110 4 - - HYPH cord-267234-waz0k0ms 110 5 SIGN sign NN cord-267234-waz0k0ms 110 6 gene gene NN cord-267234-waz0k0ms 110 7 , , , cord-267234-waz0k0ms 110 8 only only RB cord-267234-waz0k0ms 110 9 miiuy miiuy NNP cord-267234-waz0k0ms 110 10 croaker croaker NN cord-267234-waz0k0ms 110 11 had have VBD cord-267234-waz0k0ms 110 12 C14ORF140 c14orf140 $ cord-267234-waz0k0ms 110 13 and and CC cord-267234-waz0k0ms 110 14 medaka medaka NNP cord-267234-waz0k0ms 110 15 had have VBD cord-267234-waz0k0ms 110 16 two two CD cord-267234-waz0k0ms 110 17 NEK9 NEK9 NNP cord-267234-waz0k0ms 110 18 which which WDT cord-267234-waz0k0ms 110 19 were be VBD cord-267234-waz0k0ms 110 20 the the DT cord-267234-waz0k0ms 110 21 biggest big JJS cord-267234-waz0k0ms 110 22 difference difference NN cord-267234-waz0k0ms 110 23 among among IN cord-267234-waz0k0ms 110 24 these these DT cord-267234-waz0k0ms 110 25 fishes fish NNS cord-267234-waz0k0ms 110 26 . . . cord-267234-waz0k0ms 111 1 Stickleback Stickleback NNP cord-267234-waz0k0ms 111 2 was be VBD cord-267234-waz0k0ms 111 3 lacking lack VBG cord-267234-waz0k0ms 111 4 in in IN cord-267234-waz0k0ms 111 5 ACYP1 acyp1 NN cord-267234-waz0k0ms 111 6 , , , cord-267234-waz0k0ms 111 7 different different JJ cord-267234-waz0k0ms 111 8 from from IN cord-267234-waz0k0ms 111 9 all all DT cord-267234-waz0k0ms 111 10 other other JJ cord-267234-waz0k0ms 111 11 fishes fish NNS cord-267234-waz0k0ms 111 12 ( ( -LRB- cord-267234-waz0k0ms 111 13 Fig fig NN cord-267234-waz0k0ms 111 14 . . . cord-267234-waz0k0ms 111 15 1F 1F NNP cord-267234-waz0k0ms 111 16 ) ) -RRB- cord-267234-waz0k0ms 111 17 . . . cord-267234-waz0k0ms 112 1 Among among IN cord-267234-waz0k0ms 112 2 the the DT cord-267234-waz0k0ms 112 3 CLR CLR NNP cord-267234-waz0k0ms 112 4 members member NNS cord-267234-waz0k0ms 112 5 , , , cord-267234-waz0k0ms 112 6 two two CD cord-267234-waz0k0ms 112 7 genes gene NNS cord-267234-waz0k0ms 112 8 ( ( -LRB- cord-267234-waz0k0ms 112 9 L l NN cord-267234-waz0k0ms 112 10 - - HYPH cord-267234-waz0k0ms 112 11 SIGN sign NN cord-267234-waz0k0ms 112 12 - - HYPH cord-267234-waz0k0ms 112 13 like like JJ cord-267234-waz0k0ms 112 14 and and CC cord-267234-waz0k0ms 112 15 MRC2 MRC2 NNP cord-267234-waz0k0ms 112 16 ) ) -RRB- cord-267234-waz0k0ms 112 17 in in IN cord-267234-waz0k0ms 112 18 tilapia tilapia NN cord-267234-waz0k0ms 112 19 had have VBD cord-267234-waz0k0ms 112 20 different different JJ cord-267234-waz0k0ms 112 21 orientation orientation NN cord-267234-waz0k0ms 112 22 from from IN cord-267234-waz0k0ms 112 23 other other JJ cord-267234-waz0k0ms 112 24 fishes fish NNS cord-267234-waz0k0ms 112 25 . . . cord-267234-waz0k0ms 113 1 But but CC cord-267234-waz0k0ms 113 2 synteny synteny NNP cord-267234-waz0k0ms 113 3 analysis analysis NN cord-267234-waz0k0ms 113 4 still still RB cord-267234-waz0k0ms 113 5 revealed reveal VBD cord-267234-waz0k0ms 113 6 that that IN cord-267234-waz0k0ms 113 7 the the DT cord-267234-waz0k0ms 113 8 gene gene NN cord-267234-waz0k0ms 113 9 loci locus NNS cord-267234-waz0k0ms 113 10 for for IN cord-267234-waz0k0ms 113 11 L l NN cord-267234-waz0k0ms 113 12 - - HYPH cord-267234-waz0k0ms 113 13 SIGN sign NN cord-267234-waz0k0ms 113 14 in in IN cord-267234-waz0k0ms 113 15 teleost teleost NNS cord-267234-waz0k0ms 113 16 were be VBD cord-267234-waz0k0ms 113 17 quite quite RB cord-267234-waz0k0ms 113 18 conserved conserve VBN cord-267234-waz0k0ms 113 19 . . . cord-267234-waz0k0ms 114 1 The the DT cord-267234-waz0k0ms 114 2 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 114 3 tree tree NN cord-267234-waz0k0ms 114 4 of of IN cord-267234-waz0k0ms 114 5 members member NNS cord-267234-waz0k0ms 114 6 belong belong VBP cord-267234-waz0k0ms 114 7 to to IN cord-267234-waz0k0ms 114 8 CLRs clr NNS cord-267234-waz0k0ms 115 1 ( ( -LRB- cord-267234-waz0k0ms 115 2 Fig Fig NNP cord-267234-waz0k0ms 115 3 . . . cord-267234-waz0k0ms 115 4 2A 2a CD cord-267234-waz0k0ms 115 5 ) ) -RRB- cord-267234-waz0k0ms 115 6 showed show VBD cord-267234-waz0k0ms 115 7 that that IN cord-267234-waz0k0ms 115 8 each each DT cord-267234-waz0k0ms 115 9 kind kind JJ cord-267234-waz0k0ms 115 10 CLR CLR NNP cord-267234-waz0k0ms 115 11 gathered gather VBD cord-267234-waz0k0ms 115 12 together together RB cord-267234-waz0k0ms 115 13 separately separately RB cord-267234-waz0k0ms 115 14 except except IN cord-267234-waz0k0ms 115 15 DC DC NNP cord-267234-waz0k0ms 115 16 - - HYPH cord-267234-waz0k0ms 115 17 SIGN SIGN NNP cord-267234-waz0k0ms 115 18 , , , cord-267234-waz0k0ms 115 19 L l NN cord-267234-waz0k0ms 115 20 - - HYPH cord-267234-waz0k0ms 115 21 SIGN SIGN NNP cord-267234-waz0k0ms 115 22 and and CC cord-267234-waz0k0ms 115 23 L l NN cord-267234-waz0k0ms 115 24 - - HYPH cord-267234-waz0k0ms 115 25 SIGN sign NN cord-267234-waz0k0ms 115 26 - - HYPH cord-267234-waz0k0ms 115 27 like like JJ cord-267234-waz0k0ms 115 28 which which WDT cord-267234-waz0k0ms 115 29 gathered gather VBD cord-267234-waz0k0ms 115 30 together together RB cord-267234-waz0k0ms 115 31 that that IN cord-267234-waz0k0ms 115 32 perhaps perhaps RB cord-267234-waz0k0ms 115 33 because because IN cord-267234-waz0k0ms 115 34 of of IN cord-267234-waz0k0ms 115 35 the the DT cord-267234-waz0k0ms 115 36 genes gene NNS cord-267234-waz0k0ms 115 37 with with IN cord-267234-waz0k0ms 115 38 similarity similarity NN cord-267234-waz0k0ms 115 39 among among IN cord-267234-waz0k0ms 115 40 species specie NNS cord-267234-waz0k0ms 115 41 , , , cord-267234-waz0k0ms 115 42 branches branch NNS cord-267234-waz0k0ms 115 43 of of IN cord-267234-waz0k0ms 115 44 CD23 CD23 NNP cord-267234-waz0k0ms 115 45 , , , cord-267234-waz0k0ms 115 46 CLEC4 clec4 NN cord-267234-waz0k0ms 115 47 G G NNP cord-267234-waz0k0ms 115 48 , , , cord-267234-waz0k0ms 115 49 CD207 CD207 NNP cord-267234-waz0k0ms 115 50 , , , cord-267234-waz0k0ms 115 51 DC DC NNP cord-267234-waz0k0ms 115 52 - - HYPH cord-267234-waz0k0ms 115 53 SIGN SIGN NNP cord-267234-waz0k0ms 115 54 , , , cord-267234-waz0k0ms 115 55 L l NN cord-267234-waz0k0ms 115 56 - - HYPH cord-267234-waz0k0ms 115 57 SIGN SIGN NNP cord-267234-waz0k0ms 115 58 and and CC cord-267234-waz0k0ms 115 59 L l NN cord-267234-waz0k0ms 115 60 - - HYPH cord-267234-waz0k0ms 115 61 SIGN sign NN cord-267234-waz0k0ms 115 62 - - HYPH cord-267234-waz0k0ms 115 63 like like IN cord-267234-waz0k0ms 115 64 grouped grouped NNS cord-267234-waz0k0ms 115 65 together together RB cord-267234-waz0k0ms 115 66 showing show VBG cord-267234-waz0k0ms 115 67 that that IN cord-267234-waz0k0ms 115 68 these these DT cord-267234-waz0k0ms 115 69 genes gene NNS cord-267234-waz0k0ms 115 70 had have VBD cord-267234-waz0k0ms 115 71 a a DT cord-267234-waz0k0ms 115 72 closer close JJR cord-267234-waz0k0ms 115 73 evolution evolution NN cord-267234-waz0k0ms 115 74 position position NN cord-267234-waz0k0ms 115 75 and and CC cord-267234-waz0k0ms 115 76 had have VBD cord-267234-waz0k0ms 115 77 a a DT cord-267234-waz0k0ms 115 78 relatively relatively RB cord-267234-waz0k0ms 115 79 further further JJ cord-267234-waz0k0ms 115 80 evolution evolution NN cord-267234-waz0k0ms 115 81 distance distance NN cord-267234-waz0k0ms 115 82 to to IN cord-267234-waz0k0ms 115 83 ASGR1 ASGR1 NNP cord-267234-waz0k0ms 115 84 and and CC cord-267234-waz0k0ms 115 85 CD205 cd205 NN cord-267234-waz0k0ms 115 86 . . . cord-267234-waz0k0ms 116 1 In in IN cord-267234-waz0k0ms 116 2 branch branch NN cord-267234-waz0k0ms 116 3 of of IN cord-267234-waz0k0ms 116 4 DC DC NNP cord-267234-waz0k0ms 116 5 - - HYPH cord-267234-waz0k0ms 116 6 SIGN SIGN NNP cord-267234-waz0k0ms 116 7 and and CC cord-267234-waz0k0ms 116 8 L l NN cord-267234-waz0k0ms 116 9 - - HYPH cord-267234-waz0k0ms 116 10 SIGN SIGN NNP cord-267234-waz0k0ms 116 11 , , , cord-267234-waz0k0ms 116 12 L l NN cord-267234-waz0k0ms 116 13 - - HYPH cord-267234-waz0k0ms 116 14 SIGN sign NN cord-267234-waz0k0ms 116 15 - - HYPH cord-267234-waz0k0ms 116 16 like like JJ cord-267234-waz0k0ms 116 17 sequences sequence NNS cord-267234-waz0k0ms 116 18 grouped group VBN cord-267234-waz0k0ms 116 19 with with IN cord-267234-waz0k0ms 116 20 L l NN cord-267234-waz0k0ms 116 21 - - HYPH cord-267234-waz0k0ms 116 22 SIGN sign NN cord-267234-waz0k0ms 116 23 sequences sequence NNS cord-267234-waz0k0ms 116 24 closely closely RB cord-267234-waz0k0ms 116 25 which which WDT cord-267234-waz0k0ms 116 26 showed show VBD cord-267234-waz0k0ms 116 27 L l NN cord-267234-waz0k0ms 116 28 - - HYPH cord-267234-waz0k0ms 116 29 SIGN sign NN cord-267234-waz0k0ms 116 30 - - HYPH cord-267234-waz0k0ms 116 31 like like JJ cord-267234-waz0k0ms 116 32 share share NN cord-267234-waz0k0ms 116 33 high high JJ cord-267234-waz0k0ms 116 34 similarity similarity NN cord-267234-waz0k0ms 116 35 with with IN cord-267234-waz0k0ms 116 36 L l NN cord-267234-waz0k0ms 116 37 - - HYPH cord-267234-waz0k0ms 116 38 SIGN sign NN cord-267234-waz0k0ms 116 39 ; ; : cord-267234-waz0k0ms 116 40 all all DT cord-267234-waz0k0ms 116 41 fishes fish NNS cord-267234-waz0k0ms 116 42 and and CC cord-267234-waz0k0ms 116 43 mammal mammal NN cord-267234-waz0k0ms 116 44 sequences sequence NNS cord-267234-waz0k0ms 116 45 grouped grouped VBP cord-267234-waz0k0ms 116 46 separately separately RB cord-267234-waz0k0ms 116 47 that that IN cord-267234-waz0k0ms 116 48 mmDC mmdc NN cord-267234-waz0k0ms 116 49 - - HYPH cord-267234-waz0k0ms 116 50 SIGN sign NN cord-267234-waz0k0ms 116 51 grouped group VBN cord-267234-waz0k0ms 116 52 with with IN cord-267234-waz0k0ms 116 53 large large JJ cord-267234-waz0k0ms 116 54 yellow yellow JJ cord-267234-waz0k0ms 116 55 croaker croaker NN cord-267234-waz0k0ms 116 56 and and CC cord-267234-waz0k0ms 116 57 mmL mmL NNP cord-267234-waz0k0ms 116 58 - - HYPH cord-267234-waz0k0ms 116 59 SIGN sign NN cord-267234-waz0k0ms 116 60 grouped group VBN cord-267234-waz0k0ms 116 61 with with IN cord-267234-waz0k0ms 116 62 Zebra Zebra NNP cord-267234-waz0k0ms 116 63 Mbuna Mbuna NNP cord-267234-waz0k0ms 116 64 and and CC cord-267234-waz0k0ms 116 65 tilapia tilapia NN cord-267234-waz0k0ms 116 66 L l NN cord-267234-waz0k0ms 116 67 - - HYPH cord-267234-waz0k0ms 116 68 SIGN sign NN cord-267234-waz0k0ms 116 69 - - HYPH cord-267234-waz0k0ms 116 70 like like JJ cord-267234-waz0k0ms 116 71 . . . cord-267234-waz0k0ms 117 1 Another another DT cord-267234-waz0k0ms 117 2 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 117 3 tree tree NN cord-267234-waz0k0ms 117 4 of of IN cord-267234-waz0k0ms 117 5 L l NN cord-267234-waz0k0ms 117 6 - - HYPH cord-267234-waz0k0ms 117 7 SIGN sign NN cord-267234-waz0k0ms 117 8 genes gene NNS cord-267234-waz0k0ms 117 9 constructed construct VBN cord-267234-waz0k0ms 117 10 by by IN cord-267234-waz0k0ms 117 11 Bayesian Bayesian NNP cord-267234-waz0k0ms 117 12 approach approach NN cord-267234-waz0k0ms 117 13 ( ( -LRB- cord-267234-waz0k0ms 117 14 Fig Fig NNP cord-267234-waz0k0ms 117 15 . . . cord-267234-waz0k0ms 117 16 2C 2C NNP cord-267234-waz0k0ms 117 17 ) ) -RRB- cord-267234-waz0k0ms 117 18 was be VBD cord-267234-waz0k0ms 117 19 used use VBN cord-267234-waz0k0ms 117 20 to to TO cord-267234-waz0k0ms 117 21 test test VB cord-267234-waz0k0ms 117 22 the the DT cord-267234-waz0k0ms 117 23 positive positive JJ cord-267234-waz0k0ms 117 24 selection selection NN cord-267234-waz0k0ms 117 25 in in IN cord-267234-waz0k0ms 117 26 ancestral ancestral JJ cord-267234-waz0k0ms 117 27 lineages lineage NNS cord-267234-waz0k0ms 117 28 of of IN cord-267234-waz0k0ms 117 29 fishes fish NNS cord-267234-waz0k0ms 117 30 . . . cord-267234-waz0k0ms 118 1 Firstly firstly RB cord-267234-waz0k0ms 118 2 , , , cord-267234-waz0k0ms 118 3 the the DT cord-267234-waz0k0ms 118 4 value value NN cord-267234-waz0k0ms 118 5 of of IN cord-267234-waz0k0ms 118 6 ω ω NN cord-267234-waz0k0ms 118 7 was be VBD cord-267234-waz0k0ms 118 8 0.26 0.26 CD cord-267234-waz0k0ms 118 9 in in IN cord-267234-waz0k0ms 118 10 the the DT cord-267234-waz0k0ms 118 11 one one CD cord-267234-waz0k0ms 118 12 - - HYPH cord-267234-waz0k0ms 118 13 ratio ratio NN cord-267234-waz0k0ms 118 14 model model NN cord-267234-waz0k0ms 118 15 which which WDT cord-267234-waz0k0ms 118 16 assumed assume VBD cord-267234-waz0k0ms 118 17 that that IN cord-267234-waz0k0ms 118 18 one one CD cord-267234-waz0k0ms 118 19 unique unique JJ cord-267234-waz0k0ms 118 20 ω ω NN cord-267234-waz0k0ms 118 21 in in IN cord-267234-waz0k0ms 118 22 all all DT cord-267234-waz0k0ms 118 23 branches branch NNS cord-267234-waz0k0ms 118 24 of of IN cord-267234-waz0k0ms 118 25 the the DT cord-267234-waz0k0ms 118 26 tree tree NN cord-267234-waz0k0ms 118 27 ( ( -LRB- cord-267234-waz0k0ms 118 28 p p NN cord-267234-waz0k0ms 118 29 = = SYM cord-267234-waz0k0ms 118 30 0.00 0.00 CD cord-267234-waz0k0ms 118 31 , , , cord-267234-waz0k0ms 118 32 Supplementary Supplementary NNP cord-267234-waz0k0ms 118 33 Table Table NNP cord-267234-waz0k0ms 118 34 S4 S4 NNP cord-267234-waz0k0ms 118 35 ) ) -RRB- cord-267234-waz0k0ms 118 36 , , , cord-267234-waz0k0ms 118 37 showing show VBG cord-267234-waz0k0ms 118 38 that that IN cord-267234-waz0k0ms 118 39 the the DT cord-267234-waz0k0ms 118 40 entire entire JJ cord-267234-waz0k0ms 118 41 L l NN cord-267234-waz0k0ms 118 42 - - HYPH cord-267234-waz0k0ms 118 43 SIGN sign NN cord-267234-waz0k0ms 118 44 genes gene NNS cord-267234-waz0k0ms 118 45 underwent undergo VBD cord-267234-waz0k0ms 118 46 the the DT cord-267234-waz0k0ms 118 47 purifying purifying NN cord-267234-waz0k0ms 118 48 selection selection NN cord-267234-waz0k0ms 118 49 . . . cord-267234-waz0k0ms 119 1 Secondly secondly RB cord-267234-waz0k0ms 119 2 , , , cord-267234-waz0k0ms 119 3 the the DT cord-267234-waz0k0ms 119 4 freeratio freeratio NNP cord-267234-waz0k0ms 119 5 model model NN cord-267234-waz0k0ms 119 6 fitted fit VBD cord-267234-waz0k0ms 119 7 the the DT cord-267234-waz0k0ms 119 8 data datum NNS cord-267234-waz0k0ms 119 9 significantly significantly RB cord-267234-waz0k0ms 119 10 better well JJR cord-267234-waz0k0ms 119 11 than than IN cord-267234-waz0k0ms 119 12 the the DT cord-267234-waz0k0ms 119 13 one one CD cord-267234-waz0k0ms 119 14 ratiomodel ratiomodel NN cord-267234-waz0k0ms 119 15 ( ( -LRB- cord-267234-waz0k0ms 119 16 p p NN cord-267234-waz0k0ms 119 17 = = SYM cord-267234-waz0k0ms 119 18 0.00 0.00 CD cord-267234-waz0k0ms 119 19 , , , cord-267234-waz0k0ms 119 20 Supplementary Supplementary NNP cord-267234-waz0k0ms 119 21 Table Table NNP cord-267234-waz0k0ms 119 22 S4 S4 NNP cord-267234-waz0k0ms 119 23 ) ) -RRB- cord-267234-waz0k0ms 119 24 . . . cord-267234-waz0k0ms 120 1 Finally finally RB cord-267234-waz0k0ms 120 2 , , , cord-267234-waz0k0ms 120 3 the the DT cord-267234-waz0k0ms 120 4 branch branch NN cord-267234-waz0k0ms 120 5 - - HYPH cord-267234-waz0k0ms 120 6 site site NN cord-267234-waz0k0ms 120 7 model model NN cord-267234-waz0k0ms 120 8 was be VBD cord-267234-waz0k0ms 120 9 used use VBN cord-267234-waz0k0ms 120 10 to to TO cord-267234-waz0k0ms 120 11 detect detect VB cord-267234-waz0k0ms 120 12 whether whether IN cord-267234-waz0k0ms 120 13 positive positive JJ cord-267234-waz0k0ms 120 14 selection selection NN cord-267234-waz0k0ms 120 15 sites site NNS cord-267234-waz0k0ms 120 16 existed exist VBN cord-267234-waz0k0ms 120 17 in in IN cord-267234-waz0k0ms 120 18 ancestral ancestral JJ cord-267234-waz0k0ms 120 19 lineages lineage NNS cord-267234-waz0k0ms 120 20 of of IN cord-267234-waz0k0ms 120 21 fishes fish NNS cord-267234-waz0k0ms 120 22 . . . cord-267234-waz0k0ms 121 1 No no DT cord-267234-waz0k0ms 121 2 positive positive JJ cord-267234-waz0k0ms 121 3 selection selection NN cord-267234-waz0k0ms 121 4 sites site NNS cord-267234-waz0k0ms 121 5 were be VBD cord-267234-waz0k0ms 121 6 found find VBN cord-267234-waz0k0ms 121 7 in in IN cord-267234-waz0k0ms 121 8 ancestral ancestral JJ cord-267234-waz0k0ms 121 9 lineages lineage NNS cord-267234-waz0k0ms 121 10 of of IN cord-267234-waz0k0ms 121 11 fishes fish NNS cord-267234-waz0k0ms 121 12 ( ( -LRB- cord-267234-waz0k0ms 121 13 Supplementary supplementary JJ cord-267234-waz0k0ms 121 14 Table Table NNP cord-267234-waz0k0ms 121 15 S4 S4 NNP cord-267234-waz0k0ms 121 16 ) ) -RRB- cord-267234-waz0k0ms 121 17 . . . cord-267234-waz0k0ms 122 1 Meanwhile meanwhile RB cord-267234-waz0k0ms 122 2 , , , cord-267234-waz0k0ms 122 3 multiple multiple JJ cord-267234-waz0k0ms 122 4 ML ml NN cord-267234-waz0k0ms 122 5 methods method NNS cord-267234-waz0k0ms 122 6 were be VBD cord-267234-waz0k0ms 122 7 carried carry VBN cord-267234-waz0k0ms 122 8 out out RP cord-267234-waz0k0ms 122 9 to to TO cord-267234-waz0k0ms 122 10 explore explore VB cord-267234-waz0k0ms 122 11 the the DT cord-267234-waz0k0ms 122 12 selective selective JJ cord-267234-waz0k0ms 122 13 pressures pressure NNS cord-267234-waz0k0ms 122 14 on on IN cord-267234-waz0k0ms 122 15 L l NN cord-267234-waz0k0ms 122 16 - - HYPH cord-267234-waz0k0ms 122 17 SIGN sign NN cord-267234-waz0k0ms 122 18 genes gene NNS cord-267234-waz0k0ms 122 19 of of IN cord-267234-waz0k0ms 122 20 fishes fish NNS cord-267234-waz0k0ms 122 21 . . . cord-267234-waz0k0ms 123 1 For for IN cord-267234-waz0k0ms 123 2 fishes fish NNS cord-267234-waz0k0ms 123 3 L l NN cord-267234-waz0k0ms 123 4 - - HYPH cord-267234-waz0k0ms 123 5 SIGN sign NN cord-267234-waz0k0ms 123 6 genes gene NNS cord-267234-waz0k0ms 123 7 , , , cord-267234-waz0k0ms 123 8 no no DT cord-267234-waz0k0ms 123 9 positive positive JJ cord-267234-waz0k0ms 123 10 selection selection NN cord-267234-waz0k0ms 123 11 genes gene NNS cord-267234-waz0k0ms 123 12 were be VBD cord-267234-waz0k0ms 123 13 detected detect VBN cord-267234-waz0k0ms 123 14 in in IN cord-267234-waz0k0ms 123 15 M2a M2a NNP cord-267234-waz0k0ms 123 16 and and CC cord-267234-waz0k0ms 123 17 M8 M8 NNP cord-267234-waz0k0ms 123 18 model model NN cord-267234-waz0k0ms 123 19 ( ( -LRB- cord-267234-waz0k0ms 123 20 Table table NN cord-267234-waz0k0ms 123 21 1 1 CD cord-267234-waz0k0ms 123 22 ) ) -RRB- cord-267234-waz0k0ms 123 23 , , , cord-267234-waz0k0ms 123 24 but but CC cord-267234-waz0k0ms 123 25 other other JJ cord-267234-waz0k0ms 123 26 ML ML NNP cord-267234-waz0k0ms 123 27 methods method NNS cord-267234-waz0k0ms 123 28 detected detect VBD cord-267234-waz0k0ms 123 29 positive positive JJ cord-267234-waz0k0ms 123 30 selection selection NN cord-267234-waz0k0ms 123 31 sites site NNS cord-267234-waz0k0ms 123 32 in in IN cord-267234-waz0k0ms 123 33 this this DT cord-267234-waz0k0ms 123 34 group group NN cord-267234-waz0k0ms 123 35 ( ( -LRB- cord-267234-waz0k0ms 123 36 Table Table NNP cord-267234-waz0k0ms 123 37 2 2 CD cord-267234-waz0k0ms 123 38 ) ) -RRB- cord-267234-waz0k0ms 123 39 . . . cord-267234-waz0k0ms 124 1 To to TO cord-267234-waz0k0ms 124 2 improve improve VB cord-267234-waz0k0ms 124 3 the the DT cord-267234-waz0k0ms 124 4 accuracy accuracy NN cord-267234-waz0k0ms 124 5 of of IN cord-267234-waz0k0ms 124 6 positive positive JJ cord-267234-waz0k0ms 124 7 selection selection NN cord-267234-waz0k0ms 124 8 sites site NNS cord-267234-waz0k0ms 124 9 , , , cord-267234-waz0k0ms 124 10 we -PRON- PRP cord-267234-waz0k0ms 124 11 considered consider VBD cord-267234-waz0k0ms 124 12 that that IN cord-267234-waz0k0ms 124 13 the the DT cord-267234-waz0k0ms 124 14 site site NN cord-267234-waz0k0ms 124 15 under under IN cord-267234-waz0k0ms 124 16 positive positive JJ cord-267234-waz0k0ms 124 17 selection selection NN cord-267234-waz0k0ms 124 18 should should MD cord-267234-waz0k0ms 124 19 be be VB cord-267234-waz0k0ms 124 20 detected detect VBN cord-267234-waz0k0ms 124 21 in in IN cord-267234-waz0k0ms 124 22 at at RB cord-267234-waz0k0ms 124 23 least least RBS cord-267234-waz0k0ms 124 24 three three CD cord-267234-waz0k0ms 124 25 of of IN cord-267234-waz0k0ms 124 26 the the DT cord-267234-waz0k0ms 124 27 ML ML NNP cord-267234-waz0k0ms 124 28 methods method NNS cord-267234-waz0k0ms 124 29 . . . cord-267234-waz0k0ms 125 1 So so RB cord-267234-waz0k0ms 125 2 we -PRON- PRP cord-267234-waz0k0ms 125 3 found find VBD cord-267234-waz0k0ms 125 4 one one CD cord-267234-waz0k0ms 125 5 positive positive JJ cord-267234-waz0k0ms 125 6 selection selection NN cord-267234-waz0k0ms 125 7 site site NN cord-267234-waz0k0ms 125 8 ( ( -LRB- cord-267234-waz0k0ms 125 9 287 287 CD cord-267234-waz0k0ms 125 10 , , , cord-267234-waz0k0ms 125 11 Table table NN cord-267234-waz0k0ms 125 12 2 2 CD cord-267234-waz0k0ms 125 13 ) ) -RRB- cord-267234-waz0k0ms 125 14 on on IN cord-267234-waz0k0ms 125 15 fishes fish NNS cord-267234-waz0k0ms 125 16 L l NN cord-267234-waz0k0ms 125 17 - - HYPH cord-267234-waz0k0ms 125 18 SIGN sign NN cord-267234-waz0k0ms 125 19 genes gene NNS cord-267234-waz0k0ms 125 20 . . . cord-267234-waz0k0ms 126 1 The the DT cord-267234-waz0k0ms 126 2 result result NN cord-267234-waz0k0ms 126 3 showed show VBD cord-267234-waz0k0ms 126 4 that that IN cord-267234-waz0k0ms 126 5 the the DT cord-267234-waz0k0ms 126 6 ancestral ancestral JJ cord-267234-waz0k0ms 126 7 lineages lineage NNS cord-267234-waz0k0ms 126 8 of of IN cord-267234-waz0k0ms 126 9 fishes fish NNS cord-267234-waz0k0ms 126 10 underwent undergo VBD cord-267234-waz0k0ms 126 11 purifying purify VBG cord-267234-waz0k0ms 126 12 selection selection NN cord-267234-waz0k0ms 126 13 , , , cord-267234-waz0k0ms 126 14 but but CC cord-267234-waz0k0ms 126 15 the the DT cord-267234-waz0k0ms 126 16 current current JJ cord-267234-waz0k0ms 126 17 lineages lineage NNS cord-267234-waz0k0ms 126 18 of of IN cord-267234-waz0k0ms 126 19 fishes fish NNS cord-267234-waz0k0ms 126 20 underwent undergo VBD cord-267234-waz0k0ms 126 21 positive positive JJ cord-267234-waz0k0ms 126 22 selection selection NN cord-267234-waz0k0ms 126 23 . . . cord-267234-waz0k0ms 127 1 The the DT cord-267234-waz0k0ms 127 2 fishes fish NNS cord-267234-waz0k0ms 127 3 had have VBD cord-267234-waz0k0ms 127 4 lived live VBN cord-267234-waz0k0ms 127 5 in in IN cord-267234-waz0k0ms 127 6 aquatic aquatic JJ cord-267234-waz0k0ms 127 7 environment environment NN cord-267234-waz0k0ms 127 8 which which WDT cord-267234-waz0k0ms 127 9 was be VBD cord-267234-waz0k0ms 127 10 filled fill VBN cord-267234-waz0k0ms 127 11 with with IN cord-267234-waz0k0ms 127 12 countless countless JJ cord-267234-waz0k0ms 127 13 types type NNS cord-267234-waz0k0ms 127 14 and and CC cord-267234-waz0k0ms 127 15 numerous numerous JJ cord-267234-waz0k0ms 127 16 amounts amount NNS cord-267234-waz0k0ms 127 17 of of IN cord-267234-waz0k0ms 127 18 pathogens pathogen NNS cord-267234-waz0k0ms 127 19 . . . cord-267234-waz0k0ms 128 1 As as IN cord-267234-waz0k0ms 128 2 the the DT cord-267234-waz0k0ms 128 3 years year NNS cord-267234-waz0k0ms 128 4 went go VBD cord-267234-waz0k0ms 128 5 by by RB cord-267234-waz0k0ms 128 6 , , , cord-267234-waz0k0ms 128 7 the the DT cord-267234-waz0k0ms 128 8 aquatic aquatic JJ cord-267234-waz0k0ms 128 9 environment environment NN cord-267234-waz0k0ms 128 10 had have VBD cord-267234-waz0k0ms 128 11 changed change VBN cord-267234-waz0k0ms 128 12 greatly greatly RB cord-267234-waz0k0ms 128 13 and and CC cord-267234-waz0k0ms 128 14 the the DT cord-267234-waz0k0ms 128 15 pathogen pathogen NN cord-267234-waz0k0ms 128 16 significantly significantly RB cord-267234-waz0k0ms 128 17 differs differ VBZ cord-267234-waz0k0ms 128 18 from from IN cord-267234-waz0k0ms 128 19 before before RB cord-267234-waz0k0ms 128 20 . . . cord-267234-waz0k0ms 129 1 Due due IN cord-267234-waz0k0ms 129 2 to to IN cord-267234-waz0k0ms 129 3 the the DT cord-267234-waz0k0ms 129 4 change change NN cord-267234-waz0k0ms 129 5 of of IN cord-267234-waz0k0ms 129 6 aquatic aquatic JJ cord-267234-waz0k0ms 129 7 environment environment NN cord-267234-waz0k0ms 129 8 , , , cord-267234-waz0k0ms 129 9 the the DT cord-267234-waz0k0ms 129 10 fishes fish NNS cord-267234-waz0k0ms 129 11 must must MD cord-267234-waz0k0ms 129 12 further further RB cord-267234-waz0k0ms 129 13 evolve evolve VB cord-267234-waz0k0ms 129 14 to to TO cord-267234-waz0k0ms 129 15 adapt adapt VB cord-267234-waz0k0ms 129 16 to to IN cord-267234-waz0k0ms 129 17 the the DT cord-267234-waz0k0ms 129 18 environment environment NN cord-267234-waz0k0ms 129 19 . . . cord-267234-waz0k0ms 130 1 So so RB cord-267234-waz0k0ms 130 2 we -PRON- PRP cord-267234-waz0k0ms 130 3 detected detect VBD cord-267234-waz0k0ms 130 4 positive positive JJ cord-267234-waz0k0ms 130 5 selection selection NN cord-267234-waz0k0ms 130 6 sites site NNS cord-267234-waz0k0ms 130 7 in in IN cord-267234-waz0k0ms 130 8 current current JJ cord-267234-waz0k0ms 130 9 fishes fish NNS cord-267234-waz0k0ms 130 10 of of IN cord-267234-waz0k0ms 130 11 L l NN cord-267234-waz0k0ms 130 12 - - HYPH cord-267234-waz0k0ms 130 13 SIGN sign NN cord-267234-waz0k0ms 130 14 genes gene NNS cord-267234-waz0k0ms 130 15 . . . cord-267234-waz0k0ms 131 1 In in IN cord-267234-waz0k0ms 131 2 order order NN cord-267234-waz0k0ms 131 3 to to TO cord-267234-waz0k0ms 131 4 explore explore VB cord-267234-waz0k0ms 131 5 expression expression NN cord-267234-waz0k0ms 131 6 patterns pattern NNS cord-267234-waz0k0ms 131 7 of of IN cord-267234-waz0k0ms 131 8 DC DC NNP cord-267234-waz0k0ms 131 9 - - HYPH cord-267234-waz0k0ms 131 10 SIGN SIGN NNP cord-267234-waz0k0ms 131 11 and and CC cord-267234-waz0k0ms 131 12 L l NN cord-267234-waz0k0ms 131 13 - - HYPH cord-267234-waz0k0ms 131 14 SIGN sign NN cord-267234-waz0k0ms 131 15 genes gene NNS cord-267234-waz0k0ms 131 16 , , , cord-267234-waz0k0ms 131 17 the the DT cord-267234-waz0k0ms 131 18 expression expression NN cord-267234-waz0k0ms 131 19 level level NN cord-267234-waz0k0ms 131 20 of of IN cord-267234-waz0k0ms 131 21 mmDC mmdc NN cord-267234-waz0k0ms 131 22 - - HYPH cord-267234-waz0k0ms 131 23 SIGN sign NN cord-267234-waz0k0ms 131 24 and and CC cord-267234-waz0k0ms 131 25 mmL mml JJ cord-267234-waz0k0ms 131 26 - - HYPH cord-267234-waz0k0ms 131 27 SIGN sign NN cord-267234-waz0k0ms 131 28 genes gene NNS cord-267234-waz0k0ms 131 29 in in IN cord-267234-waz0k0ms 131 30 different different JJ cord-267234-waz0k0ms 131 31 tissues tissue NNS cord-267234-waz0k0ms 131 32 were be VBD cord-267234-waz0k0ms 131 33 confirmed confirm VBN cord-267234-waz0k0ms 131 34 by by IN cord-267234-waz0k0ms 131 35 qRT qRT NNP cord-267234-waz0k0ms 131 36 - - HYPH cord-267234-waz0k0ms 131 37 PCR PCR NNP cord-267234-waz0k0ms 131 38 . . . cord-267234-waz0k0ms 132 1 We -PRON- PRP cord-267234-waz0k0ms 132 2 set set VBP cord-267234-waz0k0ms 132 3 gill gill NNP cord-267234-waz0k0ms 132 4 as as IN cord-267234-waz0k0ms 132 5 calibrator calibrator NN cord-267234-waz0k0ms 132 6 to to TO cord-267234-waz0k0ms 132 7 normalize normalize VB cord-267234-waz0k0ms 132 8 DC DC NNP cord-267234-waz0k0ms 132 9 - - HYPH cord-267234-waz0k0ms 132 10 SIGN SIGN NNP cord-267234-waz0k0ms 132 11 and and CC cord-267234-waz0k0ms 132 12 L l NN cord-267234-waz0k0ms 132 13 - - HYPH cord-267234-waz0k0ms 132 14 SIGN sign NN cord-267234-waz0k0ms 132 15 expression expression NN cord-267234-waz0k0ms 132 16 level level NN cord-267234-waz0k0ms 132 17 in in IN cord-267234-waz0k0ms 132 18 ten ten CD cord-267234-waz0k0ms 132 19 uninfected uninfected JJ cord-267234-waz0k0ms 132 20 tissues tissue NNS cord-267234-waz0k0ms 132 21 . . . cord-267234-waz0k0ms 133 1 The the DT cord-267234-waz0k0ms 133 2 highest high JJS cord-267234-waz0k0ms 133 3 expression expression NN cord-267234-waz0k0ms 133 4 level level NN cord-267234-waz0k0ms 133 5 of of IN cord-267234-waz0k0ms 133 6 mmDC mmdc NN cord-267234-waz0k0ms 133 7 - - HYPH cord-267234-waz0k0ms 133 8 SIGN sign NN cord-267234-waz0k0ms 133 9 was be VBD cord-267234-waz0k0ms 133 10 in in IN cord-267234-waz0k0ms 133 11 liver liver NN cord-267234-waz0k0ms 133 12 , , , cord-267234-waz0k0ms 133 13 muscle muscle NN cord-267234-waz0k0ms 133 14 and and CC cord-267234-waz0k0ms 133 15 intestines intestine NNS cord-267234-waz0k0ms 133 16 , , , cord-267234-waz0k0ms 133 17 while while IN cord-267234-waz0k0ms 133 18 the the DT cord-267234-waz0k0ms 133 19 expression expression NN cord-267234-waz0k0ms 133 20 in in IN cord-267234-waz0k0ms 133 21 gill gill NNP cord-267234-waz0k0ms 133 22 and and CC cord-267234-waz0k0ms 133 23 heart heart NN cord-267234-waz0k0ms 133 24 was be VBD cord-267234-waz0k0ms 133 25 weak weak JJ cord-267234-waz0k0ms 133 26 . . . cord-267234-waz0k0ms 134 1 Miiuy Miiuy NNP cord-267234-waz0k0ms 134 2 croaker croaker NN cord-267234-waz0k0ms 134 3 L l NN cord-267234-waz0k0ms 134 4 - - HYPH cord-267234-waz0k0ms 134 5 SIGN SIGN NNP cord-267234-waz0k0ms 134 6 have have VBP cord-267234-waz0k0ms 134 7 a a DT cord-267234-waz0k0ms 134 8 very very RB cord-267234-waz0k0ms 134 9 high high JJ cord-267234-waz0k0ms 134 10 level level NN cord-267234-waz0k0ms 134 11 expression expression NN cord-267234-waz0k0ms 134 12 in in IN cord-267234-waz0k0ms 134 13 intestines intestine NNS cord-267234-waz0k0ms 134 14 and and CC cord-267234-waz0k0ms 134 15 spleen spleen NNS cord-267234-waz0k0ms 134 16 and and CC cord-267234-waz0k0ms 134 17 moderate moderate JJ cord-267234-waz0k0ms 134 18 expression expression NN cord-267234-waz0k0ms 134 19 in in IN cord-267234-waz0k0ms 134 20 kidney kidney NN cord-267234-waz0k0ms 134 21 and and CC cord-267234-waz0k0ms 134 22 liver liver NN cord-267234-waz0k0ms 134 23 , , , cord-267234-waz0k0ms 134 24 while while IN cord-267234-waz0k0ms 134 25 the the DT cord-267234-waz0k0ms 134 26 expression expression NN cord-267234-waz0k0ms 134 27 level level NN cord-267234-waz0k0ms 134 28 in in IN cord-267234-waz0k0ms 134 29 heart heart NN cord-267234-waz0k0ms 134 30 , , , cord-267234-waz0k0ms 134 31 muscle muscle NN cord-267234-waz0k0ms 134 32 , , , cord-267234-waz0k0ms 134 33 eye eye NN cord-267234-waz0k0ms 134 34 , , , cord-267234-waz0k0ms 134 35 gill gill NNP cord-267234-waz0k0ms 134 36 , , , cord-267234-waz0k0ms 134 37 fin fin NN cord-267234-waz0k0ms 134 38 and and CC cord-267234-waz0k0ms 134 39 brain brain NN cord-267234-waz0k0ms 134 40 was be VBD cord-267234-waz0k0ms 134 41 much much RB cord-267234-waz0k0ms 134 42 lower low JJR cord-267234-waz0k0ms 134 43 than than IN cord-267234-waz0k0ms 134 44 other other JJ cord-267234-waz0k0ms 134 45 tested test VBN cord-267234-waz0k0ms 134 46 tissues tissue NNS cord-267234-waz0k0ms 134 47 ( ( -LRB- cord-267234-waz0k0ms 134 48 Fig Fig NNP cord-267234-waz0k0ms 134 49 . . . cord-267234-waz0k0ms 134 50 3A 3A NNP cord-267234-waz0k0ms 134 51 ) ) -RRB- cord-267234-waz0k0ms 134 52 . . . cord-267234-waz0k0ms 135 1 In in IN cord-267234-waz0k0ms 135 2 Vibiro Vibiro NNP cord-267234-waz0k0ms 135 3 anguillarum anguillarum NNP cord-267234-waz0k0ms 135 4 challenged challenge VBD cord-267234-waz0k0ms 135 5 groups group NNS cord-267234-waz0k0ms 135 6 , , , cord-267234-waz0k0ms 135 7 the the DT cord-267234-waz0k0ms 135 8 tissue tissue NN cord-267234-waz0k0ms 135 9 distribution distribution NN cord-267234-waz0k0ms 135 10 and and CC cord-267234-waz0k0ms 135 11 temporal temporal JJ cord-267234-waz0k0ms 135 12 response response NN cord-267234-waz0k0ms 135 13 levels level NNS cord-267234-waz0k0ms 135 14 of of IN cord-267234-waz0k0ms 135 15 mmDC mmdc NN cord-267234-waz0k0ms 135 16 - - HYPH cord-267234-waz0k0ms 135 17 SIGN sign NN cord-267234-waz0k0ms 135 18 and and CC cord-267234-waz0k0ms 135 19 mmL mml NN cord-267234-waz0k0ms 135 20 - - HYPH cord-267234-waz0k0ms 135 21 SIGN sign NN cord-267234-waz0k0ms 135 22 at at IN cord-267234-waz0k0ms 135 23 different different JJ cord-267234-waz0k0ms 135 24 hours hour NNS cord-267234-waz0k0ms 135 25 were be VBD cord-267234-waz0k0ms 135 26 detected detect VBN cord-267234-waz0k0ms 135 27 in in IN cord-267234-waz0k0ms 135 28 the the DT cord-267234-waz0k0ms 135 29 infected infected JJ cord-267234-waz0k0ms 135 30 liver liver NN cord-267234-waz0k0ms 135 31 , , , cord-267234-waz0k0ms 135 32 kidney kidney NN cord-267234-waz0k0ms 135 33 and and CC cord-267234-waz0k0ms 135 34 spleen spleen NNS cord-267234-waz0k0ms 135 35 . . . cord-267234-waz0k0ms 136 1 In in IN cord-267234-waz0k0ms 136 2 infected infected JJ cord-267234-waz0k0ms 136 3 liver liver NN cord-267234-waz0k0ms 136 4 group group NN cord-267234-waz0k0ms 136 5 , , , cord-267234-waz0k0ms 136 6 both both DT cord-267234-waz0k0ms 136 7 DC DC NNP cord-267234-waz0k0ms 136 8 - - HYPH cord-267234-waz0k0ms 136 9 SIGN SIGN NNP cord-267234-waz0k0ms 136 10 and and CC cord-267234-waz0k0ms 136 11 L l NN cord-267234-waz0k0ms 136 12 - - HYPH cord-267234-waz0k0ms 136 13 SIGN sign NN cord-267234-waz0k0ms 136 14 have have VBP cord-267234-waz0k0ms 136 15 a a DT cord-267234-waz0k0ms 136 16 sharp sharp JJ cord-267234-waz0k0ms 136 17 up up NN cord-267234-waz0k0ms 136 18 - - HYPH cord-267234-waz0k0ms 136 19 regulation regulation NN cord-267234-waz0k0ms 136 20 in in IN cord-267234-waz0k0ms 136 21 6 6 CD cord-267234-waz0k0ms 136 22 h h NN cord-267234-waz0k0ms 136 23 and and CC cord-267234-waz0k0ms 136 24 floating float VBG cord-267234-waz0k0ms 136 25 up up RB cord-267234-waz0k0ms 136 26 and and CC cord-267234-waz0k0ms 136 27 down down RB cord-267234-waz0k0ms 136 28 from from IN cord-267234-waz0k0ms 136 29 12 12 CD cord-267234-waz0k0ms 136 30 h h NN cord-267234-waz0k0ms 136 31 to to IN cord-267234-waz0k0ms 136 32 36 36 CD cord-267234-waz0k0ms 136 33 h h NN cord-267234-waz0k0ms 136 34 , , , cord-267234-waz0k0ms 136 35 then then RB cord-267234-waz0k0ms 136 36 reaching reach VBG cord-267234-waz0k0ms 136 37 the the DT cord-267234-waz0k0ms 136 38 peak peak NN cord-267234-waz0k0ms 136 39 at at IN cord-267234-waz0k0ms 136 40 48 48 CD cord-267234-waz0k0ms 136 41 h h NN cord-267234-waz0k0ms 136 42 and and CC cord-267234-waz0k0ms 136 43 sharply sharply RB cord-267234-waz0k0ms 136 44 decreasing decrease VBG cord-267234-waz0k0ms 136 45 in in IN cord-267234-waz0k0ms 136 46 72 72 CD cord-267234-waz0k0ms 136 47 h h NN cord-267234-waz0k0ms 136 48 ( ( -LRB- cord-267234-waz0k0ms 136 49 Fig fig NN cord-267234-waz0k0ms 136 50 . . . cord-267234-waz0k0ms 136 51 3B 3B NNP cord-267234-waz0k0ms 136 52 ) ) -RRB- cord-267234-waz0k0ms 136 53 . . . cord-267234-waz0k0ms 137 1 In in IN cord-267234-waz0k0ms 137 2 spleen spleen NN cord-267234-waz0k0ms 137 3 , , , cord-267234-waz0k0ms 137 4 the the DT cord-267234-waz0k0ms 137 5 expression expression NN cord-267234-waz0k0ms 137 6 of of IN cord-267234-waz0k0ms 137 7 DC DC NNP cord-267234-waz0k0ms 137 8 - - HYPH cord-267234-waz0k0ms 137 9 SIGN SIGN NNP cord-267234-waz0k0ms 137 10 was be VBD cord-267234-waz0k0ms 137 11 volatile volatile JJ cord-267234-waz0k0ms 137 12 from from IN cord-267234-waz0k0ms 137 13 6 6 CD cord-267234-waz0k0ms 137 14 h h NN cord-267234-waz0k0ms 137 15 to to IN cord-267234-waz0k0ms 137 16 72 72 CD cord-267234-waz0k0ms 137 17 h h NN cord-267234-waz0k0ms 137 18 ; ; : cord-267234-waz0k0ms 137 19 the the DT cord-267234-waz0k0ms 137 20 highest high JJS cord-267234-waz0k0ms 137 21 expression expression NN cord-267234-waz0k0ms 137 22 level level NN cord-267234-waz0k0ms 137 23 and and CC cord-267234-waz0k0ms 137 24 lowest low JJS cord-267234-waz0k0ms 137 25 expression expression NN cord-267234-waz0k0ms 137 26 level level NN cord-267234-waz0k0ms 137 27 were be VBD cord-267234-waz0k0ms 137 28 at at IN cord-267234-waz0k0ms 137 29 24 24 CD cord-267234-waz0k0ms 137 30 h h NN cord-267234-waz0k0ms 137 31 and and CC cord-267234-waz0k0ms 137 32 12 12 CD cord-267234-waz0k0ms 137 33 h. h. NN cord-267234-waz0k0ms 138 1 The the DT cord-267234-waz0k0ms 138 2 expression expression NN cord-267234-waz0k0ms 138 3 of of IN cord-267234-waz0k0ms 138 4 L l NN cord-267234-waz0k0ms 138 5 - - HYPH cord-267234-waz0k0ms 138 6 SIGN sign NN cord-267234-waz0k0ms 138 7 floats float VBZ cord-267234-waz0k0ms 138 8 up up RB cord-267234-waz0k0ms 138 9 and and CC cord-267234-waz0k0ms 138 10 down down RB cord-267234-waz0k0ms 138 11 from from IN cord-267234-waz0k0ms 138 12 6 6 CD cord-267234-waz0k0ms 138 13 h h NN cord-267234-waz0k0ms 138 14 to to IN cord-267234-waz0k0ms 138 15 36 36 CD cord-267234-waz0k0ms 138 16 h h NN cord-267234-waz0k0ms 138 17 , , , cord-267234-waz0k0ms 138 18 then then RB cord-267234-waz0k0ms 138 19 increased increase VBD cord-267234-waz0k0ms 138 20 gradually gradually RB cord-267234-waz0k0ms 138 21 and and CC cord-267234-waz0k0ms 138 22 reached reach VBD cord-267234-waz0k0ms 138 23 its -PRON- PRP$ cord-267234-waz0k0ms 138 24 peak peak NN cord-267234-waz0k0ms 138 25 at at IN cord-267234-waz0k0ms 138 26 72 72 CD cord-267234-waz0k0ms 138 27 h h NN cord-267234-waz0k0ms 138 28 ( ( -LRB- cord-267234-waz0k0ms 138 29 Fig Fig NNP cord-267234-waz0k0ms 138 30 . . . cord-267234-waz0k0ms 138 31 3C 3C NNP cord-267234-waz0k0ms 138 32 ) ) -RRB- cord-267234-waz0k0ms 138 33 . . . cord-267234-waz0k0ms 139 1 In in IN cord-267234-waz0k0ms 139 2 the the DT cord-267234-waz0k0ms 139 3 kidney kidney NN cord-267234-waz0k0ms 139 4 , , , cord-267234-waz0k0ms 139 5 the the DT cord-267234-waz0k0ms 139 6 expression expression NN cord-267234-waz0k0ms 139 7 of of IN cord-267234-waz0k0ms 139 8 DC DC NNP cord-267234-waz0k0ms 139 9 - - HYPH cord-267234-waz0k0ms 139 10 SIGN sign NN cord-267234-waz0k0ms 139 11 increased increase VBD cord-267234-waz0k0ms 139 12 and and CC cord-267234-waz0k0ms 139 13 reached reach VBD cord-267234-waz0k0ms 139 14 its -PRON- PRP$ cord-267234-waz0k0ms 139 15 peak peak NN cord-267234-waz0k0ms 139 16 at at IN cord-267234-waz0k0ms 139 17 24 24 CD cord-267234-waz0k0ms 139 18 h h NN cord-267234-waz0k0ms 139 19 and and CC cord-267234-waz0k0ms 140 1 the the DT cord-267234-waz0k0ms 140 2 lowest low JJS cord-267234-waz0k0ms 140 3 expression expression NN cord-267234-waz0k0ms 140 4 level level NN cord-267234-waz0k0ms 140 5 was be VBD cord-267234-waz0k0ms 140 6 at at IN cord-267234-waz0k0ms 140 7 36 36 CD cord-267234-waz0k0ms 140 8 h h NN cord-267234-waz0k0ms 140 9 , , , cord-267234-waz0k0ms 140 10 while while IN cord-267234-waz0k0ms 140 11 the the DT cord-267234-waz0k0ms 140 12 highest high JJS cord-267234-waz0k0ms 140 13 expression expression NN cord-267234-waz0k0ms 140 14 level level NN cord-267234-waz0k0ms 140 15 and and CC cord-267234-waz0k0ms 140 16 lowest low JJS cord-267234-waz0k0ms 140 17 expression expression NN cord-267234-waz0k0ms 140 18 level level NN cord-267234-waz0k0ms 140 19 of of IN cord-267234-waz0k0ms 140 20 L l NN cord-267234-waz0k0ms 140 21 - - HYPH cord-267234-waz0k0ms 140 22 SIGN sign NN cord-267234-waz0k0ms 140 23 occurred occur VBD cord-267234-waz0k0ms 140 24 in in IN cord-267234-waz0k0ms 140 25 48 48 CD cord-267234-waz0k0ms 140 26 h h NN cord-267234-waz0k0ms 140 27 and and CC cord-267234-waz0k0ms 140 28 72 72 CD cord-267234-waz0k0ms 140 29 h h NN cord-267234-waz0k0ms 140 30 , , , cord-267234-waz0k0ms 140 31 respectively respectively RB cord-267234-waz0k0ms 140 32 ( ( -LRB- cord-267234-waz0k0ms 140 33 Fig Fig NNP cord-267234-waz0k0ms 140 34 . . . cord-267234-waz0k0ms 140 35 3D 3D NNP cord-267234-waz0k0ms 140 36 ) ) -RRB- cord-267234-waz0k0ms 140 37 . . . cord-267234-waz0k0ms 141 1 Both both DT cord-267234-waz0k0ms 141 2 the the DT cord-267234-waz0k0ms 141 3 expressions expression NNS cord-267234-waz0k0ms 141 4 of of IN cord-267234-waz0k0ms 141 5 mmDC mmdc NN cord-267234-waz0k0ms 141 6 - - HYPH cord-267234-waz0k0ms 141 7 SIGN sign NN cord-267234-waz0k0ms 141 8 and and CC cord-267234-waz0k0ms 141 9 mmL mml NN cord-267234-waz0k0ms 141 10 - - HYPH cord-267234-waz0k0ms 141 11 SIGN sign NN cord-267234-waz0k0ms 141 12 were be VBD cord-267234-waz0k0ms 141 13 up up RB cord-267234-waz0k0ms 141 14 - - HYPH cord-267234-waz0k0ms 141 15 regulated regulate VBN cord-267234-waz0k0ms 141 16 in in IN cord-267234-waz0k0ms 141 17 infected infected JJ cord-267234-waz0k0ms 141 18 liver liver NN cord-267234-waz0k0ms 141 19 , , , cord-267234-waz0k0ms 141 20 spleen spleen NN cord-267234-waz0k0ms 141 21 and and CC cord-267234-waz0k0ms 141 22 kidney kidney NN cord-267234-waz0k0ms 141 23 at at IN cord-267234-waz0k0ms 141 24 different different JJ cord-267234-waz0k0ms 141 25 sampling sampling NN cord-267234-waz0k0ms 141 26 time time NN cord-267234-waz0k0ms 141 27 points point NNS cord-267234-waz0k0ms 141 28 , , , cord-267234-waz0k0ms 141 29 and and CC cord-267234-waz0k0ms 141 30 mmL mmL NNP cord-267234-waz0k0ms 141 31 - - HYPH cord-267234-waz0k0ms 141 32 SIGN sign NN cord-267234-waz0k0ms 141 33 had have VBD cord-267234-waz0k0ms 141 34 the the DT cord-267234-waz0k0ms 141 35 same same JJ cord-267234-waz0k0ms 141 36 trend trend NN cord-267234-waz0k0ms 141 37 with with IN cord-267234-waz0k0ms 141 38 mmDC mmdc NN cord-267234-waz0k0ms 141 39 - - HYPH cord-267234-waz0k0ms 141 40 SIGN sign NN cord-267234-waz0k0ms 141 41 in in IN cord-267234-waz0k0ms 141 42 floating float VBG cord-267234-waz0k0ms 141 43 up up RB cord-267234-waz0k0ms 141 44 and and CC cord-267234-waz0k0ms 141 45 down down RB cord-267234-waz0k0ms 141 46 in in IN cord-267234-waz0k0ms 141 47 liver liver NN cord-267234-waz0k0ms 141 48 and and CC cord-267234-waz0k0ms 141 49 kidney kidney NN cord-267234-waz0k0ms 141 50 . . . cord-267234-waz0k0ms 142 1 These these DT cord-267234-waz0k0ms 142 2 results result NNS cord-267234-waz0k0ms 142 3 indicated indicate VBD cord-267234-waz0k0ms 142 4 that that IN cord-267234-waz0k0ms 142 5 the the DT cord-267234-waz0k0ms 142 6 mmDC mmdc NN cord-267234-waz0k0ms 142 7 - - HYPH cord-267234-waz0k0ms 142 8 SIGN sign NN cord-267234-waz0k0ms 142 9 and and CC cord-267234-waz0k0ms 142 10 mmL mmL NNP cord-267234-waz0k0ms 142 11 - - HYPH cord-267234-waz0k0ms 142 12 SIGN sign NN cord-267234-waz0k0ms 142 13 participated participate VBD cord-267234-waz0k0ms 142 14 in in IN cord-267234-waz0k0ms 142 15 the the DT cord-267234-waz0k0ms 142 16 immune immune JJ cord-267234-waz0k0ms 142 17 response response NN cord-267234-waz0k0ms 142 18 to to TO cord-267234-waz0k0ms 142 19 defend defend VB cord-267234-waz0k0ms 142 20 against against IN cord-267234-waz0k0ms 142 21 bacterial bacterial JJ cord-267234-waz0k0ms 142 22 infection infection NN cord-267234-waz0k0ms 142 23 . . . cord-267234-waz0k0ms 143 1 In in IN cord-267234-waz0k0ms 143 2 this this DT cord-267234-waz0k0ms 143 3 study study NN cord-267234-waz0k0ms 143 4 , , , cord-267234-waz0k0ms 143 5 DC DC NNP cord-267234-waz0k0ms 143 6 - - HYPH cord-267234-waz0k0ms 143 7 SIGN SIGN NNP cord-267234-waz0k0ms 143 8 and and CC cord-267234-waz0k0ms 143 9 L l NN cord-267234-waz0k0ms 143 10 - - HYPH cord-267234-waz0k0ms 143 11 SIGN sign NN cord-267234-waz0k0ms 143 12 genes gene NNS cord-267234-waz0k0ms 143 13 were be VBD cord-267234-waz0k0ms 143 14 identified identify VBN cord-267234-waz0k0ms 143 15 from from IN cord-267234-waz0k0ms 143 16 the the DT cord-267234-waz0k0ms 143 17 miiuy miiuy NNP cord-267234-waz0k0ms 143 18 croaker croaker NNP cord-267234-waz0k0ms 143 19 genome genome NN cord-267234-waz0k0ms 143 20 and and CC cord-267234-waz0k0ms 143 21 also also RB cord-267234-waz0k0ms 143 22 analyzed analyze VBD cord-267234-waz0k0ms 143 23 the the DT cord-267234-waz0k0ms 143 24 characters character NNS cord-267234-waz0k0ms 143 25 of of IN cord-267234-waz0k0ms 143 26 both both DT cord-267234-waz0k0ms 143 27 genes gene NNS cord-267234-waz0k0ms 143 28 . . . cord-267234-waz0k0ms 144 1 Miiuy Miiuy NNP cord-267234-waz0k0ms 144 2 croaker croaker NN cord-267234-waz0k0ms 144 3 DC DC NNP cord-267234-waz0k0ms 144 4 - - HYPH cord-267234-waz0k0ms 144 5 SIGN SIGN NNP cord-267234-waz0k0ms 144 6 and and CC cord-267234-waz0k0ms 144 7 L l NN cord-267234-waz0k0ms 144 8 - - HYPH cord-267234-waz0k0ms 144 9 SIGN SIGN NNP cord-267234-waz0k0ms 144 10 had have VBD cord-267234-waz0k0ms 144 11 similar similar JJ cord-267234-waz0k0ms 144 12 domains domain NNS cord-267234-waz0k0ms 144 13 with with IN cord-267234-waz0k0ms 144 14 other other JJ cord-267234-waz0k0ms 144 15 fishes fish NNS cord-267234-waz0k0ms 144 16 . . . cord-267234-waz0k0ms 145 1 We -PRON- PRP cord-267234-waz0k0ms 145 2 proposed propose VBD cord-267234-waz0k0ms 145 3 a a DT cord-267234-waz0k0ms 145 4 linear linear JJ cord-267234-waz0k0ms 145 5 framework framework NN cord-267234-waz0k0ms 145 6 of of IN cord-267234-waz0k0ms 145 7 DC DC NNP cord-267234-waz0k0ms 145 8 - - HYPH cord-267234-waz0k0ms 145 9 SIGN SIGN NNP cord-267234-waz0k0ms 145 10 and and CC cord-267234-waz0k0ms 145 11 L l NN cord-267234-waz0k0ms 145 12 - - HYPH cord-267234-waz0k0ms 145 13 SIGN sign NN cord-267234-waz0k0ms 145 14 in in IN cord-267234-waz0k0ms 145 15 teleost teleost NN cord-267234-waz0k0ms 145 16 and and CC cord-267234-waz0k0ms 145 17 confirmed confirm VBD cord-267234-waz0k0ms 145 18 that that IN cord-267234-waz0k0ms 145 19 mmDC mmdc NN cord-267234-waz0k0ms 145 20 - - HYPH cord-267234-waz0k0ms 145 21 SIGN sign NN cord-267234-waz0k0ms 145 22 had have VBD cord-267234-waz0k0ms 145 23 no no DT cord-267234-waz0k0ms 145 24 conserved conserve VBN cord-267234-waz0k0ms 145 25 genomic genomic JJ cord-267234-waz0k0ms 145 26 synteny synteny NN cord-267234-waz0k0ms 145 27 with with IN cord-267234-waz0k0ms 145 28 human human NN cord-267234-waz0k0ms 145 29 and and CC cord-267234-waz0k0ms 145 30 zebrafish zebrafish NN cord-267234-waz0k0ms 145 31 , , , cord-267234-waz0k0ms 145 32 and and CC cord-267234-waz0k0ms 145 33 L l NN cord-267234-waz0k0ms 145 34 - - HYPH cord-267234-waz0k0ms 145 35 SIGN sign NN cord-267234-waz0k0ms 145 36 genes gene NNS cord-267234-waz0k0ms 145 37 in in IN cord-267234-waz0k0ms 145 38 teleost teleost NNS cord-267234-waz0k0ms 145 39 had have VBD cord-267234-waz0k0ms 145 40 conserved conserve VBN cord-267234-waz0k0ms 145 41 synteny synteny NN cord-267234-waz0k0ms 145 42 and and CC cord-267234-waz0k0ms 145 43 underwent undergo VBD cord-267234-waz0k0ms 145 44 positive positive JJ cord-267234-waz0k0ms 145 45 selection selection NN cord-267234-waz0k0ms 145 46 to to TO cord-267234-waz0k0ms 145 47 adapt adapt VB cord-267234-waz0k0ms 145 48 to to IN cord-267234-waz0k0ms 145 49 the the DT cord-267234-waz0k0ms 145 50 aquatic aquatic JJ cord-267234-waz0k0ms 145 51 environment environment NN cord-267234-waz0k0ms 145 52 . . . cord-267234-waz0k0ms 146 1 We -PRON- PRP cord-267234-waz0k0ms 146 2 also also RB cord-267234-waz0k0ms 146 3 confirmed confirm VBD cord-267234-waz0k0ms 146 4 that that IN cord-267234-waz0k0ms 146 5 the the DT cord-267234-waz0k0ms 146 6 two two CD cord-267234-waz0k0ms 146 7 genes gene NNS cord-267234-waz0k0ms 146 8 participated participate VBD cord-267234-waz0k0ms 146 9 in in IN cord-267234-waz0k0ms 146 10 the the DT cord-267234-waz0k0ms 146 11 immune immune JJ cord-267234-waz0k0ms 146 12 response response NN cord-267234-waz0k0ms 146 13 in in IN cord-267234-waz0k0ms 146 14 teleost teleost NN cord-267234-waz0k0ms 146 15 . . . cord-267234-waz0k0ms 147 1 Most most RBS cord-267234-waz0k0ms 147 2 important important JJ cord-267234-waz0k0ms 147 3 of of IN cord-267234-waz0k0ms 147 4 all all DT cord-267234-waz0k0ms 147 5 , , , cord-267234-waz0k0ms 147 6 it -PRON- PRP cord-267234-waz0k0ms 147 7 is be VBZ cord-267234-waz0k0ms 147 8 the the DT cord-267234-waz0k0ms 147 9 first first JJ cord-267234-waz0k0ms 147 10 time time NN cord-267234-waz0k0ms 147 11 to to TO cord-267234-waz0k0ms 147 12 comprehensively comprehensively RB cord-267234-waz0k0ms 147 13 analyze analyze VB cord-267234-waz0k0ms 147 14 L l NN cord-267234-waz0k0ms 147 15 - - HYPH cord-267234-waz0k0ms 147 16 SIGN sign NN cord-267234-waz0k0ms 147 17 in in IN cord-267234-waz0k0ms 147 18 fish fish NN cord-267234-waz0k0ms 147 19 and and CC cord-267234-waz0k0ms 147 20 comparative comparative JJ cord-267234-waz0k0ms 147 21 genomics genomic NNS cord-267234-waz0k0ms 147 22 of of IN cord-267234-waz0k0ms 147 23 gene gene NN cord-267234-waz0k0ms 147 24 synteny synteny NN cord-267234-waz0k0ms 147 25 in in IN cord-267234-waz0k0ms 147 26 DC DC NNP cord-267234-waz0k0ms 147 27 - - HYPH cord-267234-waz0k0ms 147 28 SIGN SIGN NNP cord-267234-waz0k0ms 147 29 and and CC cord-267234-waz0k0ms 147 30 L l NN cord-267234-waz0k0ms 147 31 - - HYPH cord-267234-waz0k0ms 147 32 SIGN sign NN cord-267234-waz0k0ms 147 33 to to TO cord-267234-waz0k0ms 147 34 provide provide VB cord-267234-waz0k0ms 147 35 more more JJR cord-267234-waz0k0ms 147 36 information information NN cord-267234-waz0k0ms 147 37 on on IN cord-267234-waz0k0ms 147 38 the the DT cord-267234-waz0k0ms 147 39 study study NN cord-267234-waz0k0ms 147 40 of of IN cord-267234-waz0k0ms 147 41 DC DC NNP cord-267234-waz0k0ms 147 42 - - HYPH cord-267234-waz0k0ms 147 43 SIGN SIGN NNP cord-267234-waz0k0ms 147 44 family family NN cord-267234-waz0k0ms 147 45 genes gene NNS cord-267234-waz0k0ms 147 46 . . . cord-267234-waz0k0ms 148 1 L l NN cord-267234-waz0k0ms 148 2 - - HYPH cord-267234-waz0k0ms 148 3 SIGN sign NN cord-267234-waz0k0ms 148 4 - - HYPH cord-267234-waz0k0ms 148 5 like like JJ cord-267234-waz0k0ms 148 6 gene gene NN cord-267234-waz0k0ms 148 7 which which WDT cord-267234-waz0k0ms 148 8 has have VBZ cord-267234-waz0k0ms 148 9 high high JJ cord-267234-waz0k0ms 148 10 similarity similarity NN cord-267234-waz0k0ms 148 11 with with IN cord-267234-waz0k0ms 148 12 L l NN cord-267234-waz0k0ms 148 13 - - HYPH cord-267234-waz0k0ms 148 14 SIGN sign NN cord-267234-waz0k0ms 148 15 gene gene NN cord-267234-waz0k0ms 148 16 was be VBD cord-267234-waz0k0ms 148 17 obtained obtain VBN cord-267234-waz0k0ms 148 18 in in IN cord-267234-waz0k0ms 148 19 miiuy miiuy NNP cord-267234-waz0k0ms 148 20 croaker croaker NN cord-267234-waz0k0ms 148 21 , , , cord-267234-waz0k0ms 148 22 tilapia tilapia NN cord-267234-waz0k0ms 148 23 , , , cord-267234-waz0k0ms 148 24 medaka medaka NN cord-267234-waz0k0ms 148 25 , , , cord-267234-waz0k0ms 148 26 stickleback stickleback NN cord-267234-waz0k0ms 148 27 from from IN cord-267234-waz0k0ms 148 28 gene gene NN cord-267234-waz0k0ms 148 29 synteny synteny NNP cord-267234-waz0k0ms 148 30 and and CC cord-267234-waz0k0ms 148 31 clustered cluster VBN cord-267234-waz0k0ms 148 32 with with IN cord-267234-waz0k0ms 148 33 L l NN cord-267234-waz0k0ms 148 34 - - HYPH cord-267234-waz0k0ms 148 35 SIGN sign NN cord-267234-waz0k0ms 148 36 in in IN cord-267234-waz0k0ms 148 37 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 148 38 tree tree NN cord-267234-waz0k0ms 148 39 . . . cord-267234-waz0k0ms 149 1 But but CC cord-267234-waz0k0ms 149 2 only only RB cord-267234-waz0k0ms 149 3 one one CD cord-267234-waz0k0ms 149 4 L l NN cord-267234-waz0k0ms 149 5 - - HYPH cord-267234-waz0k0ms 149 6 SIGN sign NN cord-267234-waz0k0ms 149 7 gene gene NN cord-267234-waz0k0ms 149 8 was be VBD cord-267234-waz0k0ms 149 9 found find VBN cord-267234-waz0k0ms 149 10 in in IN cord-267234-waz0k0ms 149 11 mammals mammal NNS cord-267234-waz0k0ms 149 12 and and CC cord-267234-waz0k0ms 149 13 frog frog NN cord-267234-waz0k0ms 149 14 . . . cord-267234-waz0k0ms 150 1 Two two CD cord-267234-waz0k0ms 150 2 L l NN cord-267234-waz0k0ms 150 3 - - HYPH cord-267234-waz0k0ms 150 4 SIGN sign NN cord-267234-waz0k0ms 150 5 genes gene NNS cord-267234-waz0k0ms 150 6 existed exist VBD cord-267234-waz0k0ms 150 7 in in IN cord-267234-waz0k0ms 150 8 some some DT cord-267234-waz0k0ms 150 9 fishes fish NNS cord-267234-waz0k0ms 150 10 maybe maybe RB cord-267234-waz0k0ms 150 11 because because IN cord-267234-waz0k0ms 150 12 of of IN cord-267234-waz0k0ms 150 13 FSGD FSGD NNP cord-267234-waz0k0ms 150 14 . . . cord-267234-waz0k0ms 151 1 From from IN cord-267234-waz0k0ms 151 2 gene gene NN cord-267234-waz0k0ms 151 3 synteny synteny NNP cord-267234-waz0k0ms 151 4 , , , cord-267234-waz0k0ms 151 5 the the DT cord-267234-waz0k0ms 151 6 L L NNP cord-267234-waz0k0ms 151 7 - - HYPH cord-267234-waz0k0ms 151 8 SIGN SIGN NNP cord-267234-waz0k0ms 151 9 and and CC cord-267234-waz0k0ms 151 10 L l NN cord-267234-waz0k0ms 151 11 - - HYPH cord-267234-waz0k0ms 151 12 SIGN sign NN cord-267234-waz0k0ms 151 13 - - HYPH cord-267234-waz0k0ms 151 14 like like JJ cord-267234-waz0k0ms 151 15 clustered clustered JJ cord-267234-waz0k0ms 151 16 together together RB cord-267234-waz0k0ms 151 17 maybe maybe RB cord-267234-waz0k0ms 151 18 to to TO cord-267234-waz0k0ms 151 19 perform perform VB cord-267234-waz0k0ms 151 20 more more JJR cord-267234-waz0k0ms 151 21 functions function NNS cord-267234-waz0k0ms 151 22 to to TO cord-267234-waz0k0ms 151 23 recognize recognize VB cord-267234-waz0k0ms 151 24 and and CC cord-267234-waz0k0ms 151 25 defend defend VB cord-267234-waz0k0ms 151 26 pathogens pathogen NNS cord-267234-waz0k0ms 151 27 . . . cord-267234-waz0k0ms 152 1 The the DT cord-267234-waz0k0ms 152 2 information information NN cord-267234-waz0k0ms 152 3 can can MD cord-267234-waz0k0ms 152 4 reveal reveal VB cord-267234-waz0k0ms 152 5 the the DT cord-267234-waz0k0ms 152 6 adaptive adaptive JJ cord-267234-waz0k0ms 152 7 evolution evolution NN cord-267234-waz0k0ms 152 8 and and CC cord-267234-waz0k0ms 152 9 selection selection NN cord-267234-waz0k0ms 152 10 in in IN cord-267234-waz0k0ms 152 11 the the DT cord-267234-waz0k0ms 152 12 changing change VBG cord-267234-waz0k0ms 152 13 environment environment NN cord-267234-waz0k0ms 152 14 of of IN cord-267234-waz0k0ms 152 15 L l NN cord-267234-waz0k0ms 152 16 - - HYPH cord-267234-waz0k0ms 152 17 SIGN sign NN cord-267234-waz0k0ms 152 18 genes gene NNS cord-267234-waz0k0ms 152 19 . . . cord-267234-waz0k0ms 153 1 Our -PRON- PRP$ cord-267234-waz0k0ms 153 2 study study NN cord-267234-waz0k0ms 153 3 will will MD cord-267234-waz0k0ms 153 4 provide provide VB cord-267234-waz0k0ms 153 5 more more JJR cord-267234-waz0k0ms 153 6 information information NN cord-267234-waz0k0ms 153 7 in in IN cord-267234-waz0k0ms 153 8 studying study VBG cord-267234-waz0k0ms 153 9 the the DT cord-267234-waz0k0ms 153 10 evolutionary evolutionary JJ cord-267234-waz0k0ms 153 11 process process NN cord-267234-waz0k0ms 153 12 and and CC cord-267234-waz0k0ms 153 13 expression expression NN cord-267234-waz0k0ms 153 14 patterns pattern NNS cord-267234-waz0k0ms 153 15 of of IN cord-267234-waz0k0ms 153 16 immune immune JJ cord-267234-waz0k0ms 153 17 genes gene NNS cord-267234-waz0k0ms 153 18 . . . cord-267234-waz0k0ms 154 1 C c NN cord-267234-waz0k0ms 154 2 - - HYPH cord-267234-waz0k0ms 154 3 type type NN cord-267234-waz0k0ms 154 4 lectins lectin NNS cord-267234-waz0k0ms 154 5 DC DC NNP cord-267234-waz0k0ms 154 6 - - HYPH cord-267234-waz0k0ms 154 7 SIGN SIGN NNP cord-267234-waz0k0ms 154 8 and and CC cord-267234-waz0k0ms 154 9 L l NN cord-267234-waz0k0ms 154 10 - - HYPH cord-267234-waz0k0ms 154 11 SIGN sign NN cord-267234-waz0k0ms 154 12 mediate mediate VB cord-267234-waz0k0ms 154 13 cellular cellular JJ cord-267234-waz0k0ms 154 14 entry entry NN cord-267234-waz0k0ms 154 15 by by IN cord-267234-waz0k0ms 154 16 Ebola Ebola NNP cord-267234-waz0k0ms 154 17 virus virus NN cord-267234-waz0k0ms 154 18 in in IN cord-267234-waz0k0ms 154 19 cis cis NNP cord-267234-waz0k0ms 154 20 and and CC cord-267234-waz0k0ms 154 21 in in IN cord-267234-waz0k0ms 154 22 trans trans NNP cord-267234-waz0k0ms 154 23 Innate innate JJ cord-267234-waz0k0ms 154 24 immunity immunity NN cord-267234-waz0k0ms 154 25 of of IN cord-267234-waz0k0ms 154 26 finfish finfish JJ cord-267234-waz0k0ms 154 27 : : : cord-267234-waz0k0ms 154 28 primordial primordial JJ cord-267234-waz0k0ms 154 29 conservation conservation NN cord-267234-waz0k0ms 154 30 and and CC cord-267234-waz0k0ms 154 31 function function NN cord-267234-waz0k0ms 154 32 of of IN cord-267234-waz0k0ms 154 33 viral viral JJ cord-267234-waz0k0ms 154 34 RNA RNA NNP cord-267234-waz0k0ms 154 35 sensors sensor NNS cord-267234-waz0k0ms 154 36 in in IN cord-267234-waz0k0ms 154 37 teleosts teleost NNS cord-267234-waz0k0ms 154 38 DC DC NNP cord-267234-waz0k0ms 154 39 - - HYPH cord-267234-waz0k0ms 154 40 SIGN SIGN NNP cord-267234-waz0k0ms 154 41 and and CC cord-267234-waz0k0ms 154 42 DC DC NNP cord-267234-waz0k0ms 154 43 - - HYPH cord-267234-waz0k0ms 154 44 SIGNR SIGNR NNP cord-267234-waz0k0ms 154 45 genetic genetic JJ cord-267234-waz0k0ms 154 46 diversity diversity NN cord-267234-waz0k0ms 154 47 among among IN cord-267234-waz0k0ms 154 48 different different JJ cord-267234-waz0k0ms 154 49 ethnic ethnic JJ cord-267234-waz0k0ms 154 50 populations population NNS cord-267234-waz0k0ms 154 51 : : : cord-267234-waz0k0ms 154 52 potential potential JJ cord-267234-waz0k0ms 154 53 implications implication NNS cord-267234-waz0k0ms 154 54 for for IN cord-267234-waz0k0ms 154 55 pathogen pathogen NN cord-267234-waz0k0ms 154 56 recognition recognition NN cord-267234-waz0k0ms 154 57 and and CC cord-267234-waz0k0ms 154 58 disease disease NN cord-267234-waz0k0ms 154 59 susceptibility susceptibility NN cord-267234-waz0k0ms 154 60 Prediction Prediction NNP cord-267234-waz0k0ms 154 61 of of IN cord-267234-waz0k0ms 154 62 complete complete JJ cord-267234-waz0k0ms 154 63 gene gene NN cord-267234-waz0k0ms 154 64 structures structure NNS cord-267234-waz0k0ms 154 65 in in IN cord-267234-waz0k0ms 154 66 human human JJ cord-267234-waz0k0ms 154 67 genomic genomic NN cord-267234-waz0k0ms 154 68 DNA dna NN cord-267234-waz0k0ms 154 69 Characterization characterization NN cord-267234-waz0k0ms 154 70 of of IN cord-267234-waz0k0ms 154 71 the the DT cord-267234-waz0k0ms 154 72 miiuy miiuy NNP cord-267234-waz0k0ms 154 73 croaker croaker NNP cord-267234-waz0k0ms 154 74 ( ( -LRB- cord-267234-waz0k0ms 154 75 miichthys miichthys NNP cord-267234-waz0k0ms 154 76 miiuy miiuy NNP cord-267234-waz0k0ms 154 77 ) ) -RRB- cord-267234-waz0k0ms 155 1 transcriptome transcriptome NN cord-267234-waz0k0ms 155 2 and and CC cord-267234-waz0k0ms 155 3 development development NN cord-267234-waz0k0ms 155 4 of of IN cord-267234-waz0k0ms 155 5 immune immune JJ cord-267234-waz0k0ms 155 6 - - HYPH cord-267234-waz0k0ms 155 7 relevant relevant JJ cord-267234-waz0k0ms 155 8 genes gene NNS cord-267234-waz0k0ms 155 9 and and CC cord-267234-waz0k0ms 155 10 molecular molecular JJ cord-267234-waz0k0ms 155 11 markers marker NNS cord-267234-waz0k0ms 155 12 Identification Identification NNP cord-267234-waz0k0ms 155 13 of of IN cord-267234-waz0k0ms 155 14 DC DC NNP cord-267234-waz0k0ms 155 15 - - HYPH cord-267234-waz0k0ms 155 16 SIGN SIGN NNP cord-267234-waz0k0ms 155 17 , , , cord-267234-waz0k0ms 155 18 a a DT cord-267234-waz0k0ms 155 19 novel novel JJ cord-267234-waz0k0ms 155 20 dendritic dendritic JJ cord-267234-waz0k0ms 155 21 cell cell NN cord-267234-waz0k0ms 155 22 - - HYPH cord-267234-waz0k0ms 155 23 specific specific JJ cord-267234-waz0k0ms 155 24 ICAM-3 icam-3 JJ cord-267234-waz0k0ms 155 25 receptor receptor NN cord-267234-waz0k0ms 155 26 that that WDT cord-267234-waz0k0ms 155 27 supports support VBZ cord-267234-waz0k0ms 155 28 primary primary JJ cord-267234-waz0k0ms 155 29 immune immune JJ cord-267234-waz0k0ms 155 30 responses response NNS cord-267234-waz0k0ms 155 31 Identification Identification NNP cord-267234-waz0k0ms 155 32 of of IN cord-267234-waz0k0ms 155 33 a a DT cord-267234-waz0k0ms 155 34 porcine porcine JJ cord-267234-waz0k0ms 155 35 DC DC NNP cord-267234-waz0k0ms 155 36 - - HYPH cord-267234-waz0k0ms 155 37 SIGN sign NN cord-267234-waz0k0ms 155 38 - - HYPH cord-267234-waz0k0ms 155 39 related relate VBN cord-267234-waz0k0ms 155 40 C c NN cord-267234-waz0k0ms 155 41 - - HYPH cord-267234-waz0k0ms 155 42 type type NN cord-267234-waz0k0ms 155 43 lectin lectin NN cord-267234-waz0k0ms 155 44 , , , cord-267234-waz0k0ms 155 45 porcine porcine JJ cord-267234-waz0k0ms 155 46 CLEC4 clec4 IN cord-267234-waz0k0ms 155 47 G g NN cord-267234-waz0k0ms 155 48 ( ( -LRB- cord-267234-waz0k0ms 155 49 LSECtin lsectin UH cord-267234-waz0k0ms 155 50 ) ) -RRB- cord-267234-waz0k0ms 155 51 , , , cord-267234-waz0k0ms 155 52 and and CC cord-267234-waz0k0ms 155 53 its -PRON- PRP$ cord-267234-waz0k0ms 155 54 order order NN cord-267234-waz0k0ms 155 55 of of IN cord-267234-waz0k0ms 155 56 intron intron NN cord-267234-waz0k0ms 155 57 removal removal NN cord-267234-waz0k0ms 155 58 during during IN cord-267234-waz0k0ms 155 59 splicing splicing NN cord-267234-waz0k0ms 155 60 : : : cord-267234-waz0k0ms 155 61 comparative comparative JJ cord-267234-waz0k0ms 155 62 genomic genomic JJ cord-267234-waz0k0ms 155 63 analyses analysis NNS cord-267234-waz0k0ms 155 64 of of IN cord-267234-waz0k0ms 155 65 the the DT cord-267234-waz0k0ms 155 66 cluster cluster NN cord-267234-waz0k0ms 155 67 of of IN cord-267234-waz0k0ms 155 68 genes gene NNS cord-267234-waz0k0ms 155 69 CD23 CD23 NNP cord-267234-waz0k0ms 155 70 / / SYM cord-267234-waz0k0ms 155 71 CLEC4G CLEC4G NNP cord-267234-waz0k0ms 155 72 / / SYM cord-267234-waz0k0ms 155 73 DC DC NNP cord-267234-waz0k0ms 155 74 - - HYPH cord-267234-waz0k0ms 155 75 SIGN SIGN NNP cord-267234-waz0k0ms 155 76 among among IN cord-267234-waz0k0ms 155 77 mammalian mammalian JJ cord-267234-waz0k0ms 155 78 species specie NNS cord-267234-waz0k0ms 155 79 DC DC NNP cord-267234-waz0k0ms 155 80 - - HYPH cord-267234-waz0k0ms 155 81 SIGN SIGN NNP cord-267234-waz0k0ms 155 82 and and CC cord-267234-waz0k0ms 155 83 L l NN cord-267234-waz0k0ms 155 84 - - HYPH cord-267234-waz0k0ms 155 85 SIGN sign NN cord-267234-waz0k0ms 155 86 : : : cord-267234-waz0k0ms 155 87 the the DT cord-267234-waz0k0ms 155 88 SIGNs sign NNS cord-267234-waz0k0ms 155 89 for for IN cord-267234-waz0k0ms 155 90 infection infection NN cord-267234-waz0k0ms 156 1 A a DT cord-267234-waz0k0ms 156 2 novel novel JJ cord-267234-waz0k0ms 156 3 C c NN cord-267234-waz0k0ms 156 4 - - HYPH cord-267234-waz0k0ms 156 5 type type NN cord-267234-waz0k0ms 156 6 lectin lectin NN cord-267234-waz0k0ms 156 7 from from IN cord-267234-waz0k0ms 156 8 bay bay NNP cord-267234-waz0k0ms 156 9 scallop scallop NNP cord-267234-waz0k0ms 156 10 Argopecten Argopecten NNP cord-267234-waz0k0ms 156 11 irradians irradian NNS cord-267234-waz0k0ms 156 12 ( ( -LRB- cord-267234-waz0k0ms 156 13 AiCTL-7 aictl-7 RB cord-267234-waz0k0ms 156 14 ) ) -RRB- cord-267234-waz0k0ms 156 15 agglutinating agglutinate VBG cord-267234-waz0k0ms 156 16 fungi fungus NNS cord-267234-waz0k0ms 156 17 with with IN cord-267234-waz0k0ms 156 18 mannose mannose NN cord-267234-waz0k0ms 156 19 specificity specificity NN cord-267234-waz0k0ms 156 20 Distinct distinct JJ cord-267234-waz0k0ms 156 21 functions function NNS cord-267234-waz0k0ms 156 22 of of IN cord-267234-waz0k0ms 156 23 DC DC NNP cord-267234-waz0k0ms 156 24 - - HYPH cord-267234-waz0k0ms 156 25 SIGN SIGN NNP cord-267234-waz0k0ms 156 26 and and CC cord-267234-waz0k0ms 156 27 its -PRON- PRP$ cord-267234-waz0k0ms 156 28 homologues homologue NNS cord-267234-waz0k0ms 156 29 L l NN cord-267234-waz0k0ms 156 30 - - HYPH cord-267234-waz0k0ms 156 31 SIGN sign NN cord-267234-waz0k0ms 156 32 ( ( -LRB- cord-267234-waz0k0ms 156 33 DCSIGNR DCSIGNR NNP cord-267234-waz0k0ms 156 34 ) ) -RRB- cord-267234-waz0k0ms 156 35 and and CC cord-267234-waz0k0ms 156 36 mSIGNR1 mSIGNR1 NNP cord-267234-waz0k0ms 156 37 in in IN cord-267234-waz0k0ms 156 38 pathogen pathogen NN cord-267234-waz0k0ms 156 39 recognition recognition NN cord-267234-waz0k0ms 156 40 and and CC cord-267234-waz0k0ms 156 41 immune immune JJ cord-267234-waz0k0ms 156 42 regulation regulation NN cord-267234-waz0k0ms 157 1 Targeting target VBG cord-267234-waz0k0ms 157 2 C c NN cord-267234-waz0k0ms 157 3 - - HYPH cord-267234-waz0k0ms 157 4 type type NN cord-267234-waz0k0ms 157 5 lectin lectin NN cord-267234-waz0k0ms 157 6 receptors receptor NNS cord-267234-waz0k0ms 157 7 with with IN cord-267234-waz0k0ms 157 8 multivalent multivalent JJ cord-267234-waz0k0ms 157 9 carbohydrate carbohydrate NN cord-267234-waz0k0ms 157 10 ligands ligand NNS cord-267234-waz0k0ms 158 1 SMART smart JJ cord-267234-waz0k0ms 158 2 5 5 CD cord-267234-waz0k0ms 159 1 : : : cord-267234-waz0k0ms 159 2 domains domain NNS cord-267234-waz0k0ms 159 3 in in IN cord-267234-waz0k0ms 159 4 the the DT cord-267234-waz0k0ms 159 5 context context NN cord-267234-waz0k0ms 159 6 of of IN cord-267234-waz0k0ms 159 7 genomes genome NNS cord-267234-waz0k0ms 159 8 and and CC cord-267234-waz0k0ms 159 9 networks network NNS cord-267234-waz0k0ms 160 1 The the DT cord-267234-waz0k0ms 160 2 VNTR vntr NN cord-267234-waz0k0ms 160 3 polymorphism polymorphism NN cord-267234-waz0k0ms 160 4 of of IN cord-267234-waz0k0ms 160 5 the the DT cord-267234-waz0k0ms 160 6 L L NNP cord-267234-waz0k0ms 160 7 - - HYPH cord-267234-waz0k0ms 160 8 SIGN sign NN cord-267234-waz0k0ms 160 9 gene gene NN cord-267234-waz0k0ms 160 10 and and CC cord-267234-waz0k0ms 160 11 susceptibility susceptibility NN cord-267234-waz0k0ms 160 12 to to IN cord-267234-waz0k0ms 160 13 HIV-1 HIV-1 NNP cord-267234-waz0k0ms 160 14 infection infection NN cord-267234-waz0k0ms 160 15 in in IN cord-267234-waz0k0ms 160 16 Han Han NNP cord-267234-waz0k0ms 160 17 Chinese chinese JJ cord-267234-waz0k0ms 160 18 population population NN cord-267234-waz0k0ms 161 1 The the DT cord-267234-waz0k0ms 161 2 DC DC NNP cord-267234-waz0k0ms 161 3 - - HYPH cord-267234-waz0k0ms 161 4 SIGN sign NN cord-267234-waz0k0ms 161 5 of of IN cord-267234-waz0k0ms 161 6 zebrafish zebrafish NN cord-267234-waz0k0ms 161 7 : : : cord-267234-waz0k0ms 161 8 insights insight NNS cord-267234-waz0k0ms 161 9 into into IN cord-267234-waz0k0ms 161 10 the the DT cord-267234-waz0k0ms 161 11 existence existence NN cord-267234-waz0k0ms 161 12 of of IN cord-267234-waz0k0ms 161 13 a a DT cord-267234-waz0k0ms 161 14 CD209 cd209 CD cord-267234-waz0k0ms 161 15 homologue homologue NN cord-267234-waz0k0ms 161 16 in in IN cord-267234-waz0k0ms 161 17 a a DT cord-267234-waz0k0ms 161 18 lower low JJR cord-267234-waz0k0ms 161 19 vertebrate vertebrate NN cord-267234-waz0k0ms 161 20 and and CC cord-267234-waz0k0ms 161 21 its -PRON- PRP$ cord-267234-waz0k0ms 161 22 involvement involvement NN cord-267234-waz0k0ms 161 23 in in IN cord-267234-waz0k0ms 161 24 adaptive adaptive JJ cord-267234-waz0k0ms 161 25 immunity immunity NN cord-267234-waz0k0ms 161 26 DC DC NNP cord-267234-waz0k0ms 161 27 - - HYPH cord-267234-waz0k0ms 161 28 SIGN SIGN NNP cord-267234-waz0k0ms 161 29 and and CC cord-267234-waz0k0ms 161 30 L l NN cord-267234-waz0k0ms 161 31 - - HYPH cord-267234-waz0k0ms 161 32 SIGN sign NN cord-267234-waz0k0ms 161 33 are be VBP cord-267234-waz0k0ms 161 34 high high JJ cord-267234-waz0k0ms 161 35 affinity affinity NN cord-267234-waz0k0ms 161 36 binding bind VBG cord-267234-waz0k0ms 161 37 receptors receptor NNS cord-267234-waz0k0ms 161 38 for for IN cord-267234-waz0k0ms 161 39 hepatitis hepatitis NN cord-267234-waz0k0ms 161 40 C C NNP cord-267234-waz0k0ms 161 41 virus virus NN cord-267234-waz0k0ms 161 42 glycoprotein glycoprotein NN cord-267234-waz0k0ms 161 43 E2 E2 NNP cord-267234-waz0k0ms 161 44 Genomicus Genomicus NNP cord-267234-waz0k0ms 161 45 : : : cord-267234-waz0k0ms 161 46 a a DT cord-267234-waz0k0ms 161 47 database database NN cord-267234-waz0k0ms 161 48 and and CC cord-267234-waz0k0ms 161 49 a a DT cord-267234-waz0k0ms 161 50 browser browser NN cord-267234-waz0k0ms 161 51 to to TO cord-267234-waz0k0ms 161 52 study study VB cord-267234-waz0k0ms 161 53 gene gene NN cord-267234-waz0k0ms 161 54 synteny synteny NN cord-267234-waz0k0ms 161 55 in in IN cord-267234-waz0k0ms 161 56 modern modern JJ cord-267234-waz0k0ms 161 57 and and CC cord-267234-waz0k0ms 161 58 ancestral ancestral JJ cord-267234-waz0k0ms 161 59 genomes genome NNS cord-267234-waz0k0ms 162 1 TreeView TreeView NNP cord-267234-waz0k0ms 162 2 : : : cord-267234-waz0k0ms 162 3 an an DT cord-267234-waz0k0ms 162 4 application application NN cord-267234-waz0k0ms 162 5 to to TO cord-267234-waz0k0ms 162 6 display display VB cord-267234-waz0k0ms 162 7 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 162 8 trees tree NNS cord-267234-waz0k0ms 162 9 on on IN cord-267234-waz0k0ms 162 10 personal personal JJ cord-267234-waz0k0ms 162 11 computers computer NNS cord-267234-waz0k0ms 163 1 Datamonkey Datamonkey NNP cord-267234-waz0k0ms 163 2 : : : cord-267234-waz0k0ms 163 3 rapid rapid JJ cord-267234-waz0k0ms 163 4 detection detection NN cord-267234-waz0k0ms 163 5 of of IN cord-267234-waz0k0ms 163 6 selective selective JJ cord-267234-waz0k0ms 163 7 pressure pressure NN cord-267234-waz0k0ms 163 8 on on IN cord-267234-waz0k0ms 163 9 individual individual JJ cord-267234-waz0k0ms 163 10 sites site NNS cord-267234-waz0k0ms 163 11 of of IN cord-267234-waz0k0ms 163 12 codon codon NN cord-267234-waz0k0ms 163 13 alignments alignment NNS cord-267234-waz0k0ms 163 14 Inhibitory Inhibitory NNP cord-267234-waz0k0ms 163 15 C c NN cord-267234-waz0k0ms 163 16 - - HYPH cord-267234-waz0k0ms 163 17 type type NN cord-267234-waz0k0ms 163 18 lectin lectin NN cord-267234-waz0k0ms 163 19 receptors receptor NNS cord-267234-waz0k0ms 163 20 in in IN cord-267234-waz0k0ms 163 21 myeloid myeloid NN cord-267234-waz0k0ms 163 22 cells cell NNS cord-267234-waz0k0ms 163 23 MrBayes MrBayes NNP cord-267234-waz0k0ms 163 24 3 3 CD cord-267234-waz0k0ms 163 25 : : : cord-267234-waz0k0ms 164 1 Bayesian bayesian JJ cord-267234-waz0k0ms 164 2 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 164 3 inference inference NN cord-267234-waz0k0ms 164 4 under under IN cord-267234-waz0k0ms 164 5 mixed mixed JJ cord-267234-waz0k0ms 164 6 models model NNS cord-267234-waz0k0ms 164 7 C c NN cord-267234-waz0k0ms 164 8 - - HYPH cord-267234-waz0k0ms 164 9 type type NN cord-267234-waz0k0ms 164 10 lectin lectin NN cord-267234-waz0k0ms 164 11 DC DC NNP cord-267234-waz0k0ms 164 12 - - HYPH cord-267234-waz0k0ms 164 13 SIGN SIGN NNP cord-267234-waz0k0ms 164 14 : : : cord-267234-waz0k0ms 164 15 an an DT cord-267234-waz0k0ms 164 16 adhesion adhesion NN cord-267234-waz0k0ms 164 17 , , , cord-267234-waz0k0ms 164 18 signalling signal VBG cord-267234-waz0k0ms 164 19 and and CC cord-267234-waz0k0ms 164 20 antigen antigen NN cord-267234-waz0k0ms 164 21 - - HYPH cord-267234-waz0k0ms 164 22 uptake uptake NN cord-267234-waz0k0ms 164 23 molecule molecule NN cord-267234-waz0k0ms 164 24 that that WDT cord-267234-waz0k0ms 164 25 guides guide VBZ cord-267234-waz0k0ms 164 26 dendritic dendritic JJ cord-267234-waz0k0ms 164 27 cells cell NNS cord-267234-waz0k0ms 164 28 in in IN cord-267234-waz0k0ms 164 29 immunity immunity NN cord-267234-waz0k0ms 164 30 MEGA5 MEGA5 NNP cord-267234-waz0k0ms 164 31 : : : cord-267234-waz0k0ms 165 1 molecular molecular JJ cord-267234-waz0k0ms 165 2 evolutionary evolutionary JJ cord-267234-waz0k0ms 165 3 genetics genetics NN cord-267234-waz0k0ms 165 4 analysis analysis NN cord-267234-waz0k0ms 165 5 using use VBG cord-267234-waz0k0ms 165 6 maximum maximum JJ cord-267234-waz0k0ms 165 7 likelihood likelihood NN cord-267234-waz0k0ms 165 8 , , , cord-267234-waz0k0ms 165 9 evolutionary evolutionary JJ cord-267234-waz0k0ms 165 10 distance distance NN cord-267234-waz0k0ms 165 11 , , , cord-267234-waz0k0ms 165 12 and and CC cord-267234-waz0k0ms 165 13 maximum maximum JJ cord-267234-waz0k0ms 165 14 parsimony parsimony NN cord-267234-waz0k0ms 165 15 methods method NNS cord-267234-waz0k0ms 165 16 CLUSTAL CLUSTAL NNP cord-267234-waz0k0ms 165 17 W W NNP cord-267234-waz0k0ms 165 18 : : : cord-267234-waz0k0ms 165 19 improving improve VBG cord-267234-waz0k0ms 165 20 the the DT cord-267234-waz0k0ms 165 21 sensitivity sensitivity NN cord-267234-waz0k0ms 165 22 of of IN cord-267234-waz0k0ms 165 23 progressive progressive JJ cord-267234-waz0k0ms 165 24 multiple multiple JJ cord-267234-waz0k0ms 165 25 sequence sequence NN cord-267234-waz0k0ms 165 26 alignment alignment NN cord-267234-waz0k0ms 165 27 through through IN cord-267234-waz0k0ms 165 28 sequence sequence NN cord-267234-waz0k0ms 165 29 weighting weighting NN cord-267234-waz0k0ms 165 30 , , , cord-267234-waz0k0ms 165 31 positions position NNS cord-267234-waz0k0ms 165 32 - - HYPH cord-267234-waz0k0ms 165 33 specific specific JJ cord-267234-waz0k0ms 165 34 gap gap NN cord-267234-waz0k0ms 165 35 penalties penalty NNS cord-267234-waz0k0ms 165 36 and and CC cord-267234-waz0k0ms 165 37 weight weight NN cord-267234-waz0k0ms 165 38 matrix matrix NN cord-267234-waz0k0ms 165 39 choice choice NN cord-267234-waz0k0ms 165 40 Characterization characterization NN cord-267234-waz0k0ms 165 41 and and CC cord-267234-waz0k0ms 165 42 expression expression NN cord-267234-waz0k0ms 165 43 of of IN cord-267234-waz0k0ms 165 44 the the DT cord-267234-waz0k0ms 165 45 CXCR1 cxcr1 NN cord-267234-waz0k0ms 165 46 and and CC cord-267234-waz0k0ms 165 47 CXCR4 CXCR4 NNS cord-267234-waz0k0ms 165 48 in in IN cord-267234-waz0k0ms 165 49 miiuy miiuy NNP cord-267234-waz0k0ms 165 50 croaker croaker NN cord-267234-waz0k0ms 165 51 and and CC cord-267234-waz0k0ms 165 52 evolutionary evolutionary JJ cord-267234-waz0k0ms 165 53 analysis analysis NN cord-267234-waz0k0ms 165 54 shows show VBZ cord-267234-waz0k0ms 165 55 the the DT cord-267234-waz0k0ms 165 56 strong strong JJ cord-267234-waz0k0ms 165 57 positive positive JJ cord-267234-waz0k0ms 165 58 selection selection NN cord-267234-waz0k0ms 165 59 pressures pressure NNS cord-267234-waz0k0ms 165 60 imposed impose VBN cord-267234-waz0k0ms 165 61 in in IN cord-267234-waz0k0ms 165 62 mammal mammal NN cord-267234-waz0k0ms 165 63 CXCR1 CXCR1 NNP cord-267234-waz0k0ms 165 64 PAML PAML NNP cord-267234-waz0k0ms 165 65 4 4 CD cord-267234-waz0k0ms 165 66 : : : cord-267234-waz0k0ms 165 67 phylogenetic phylogenetic JJ cord-267234-waz0k0ms 165 68 analysis analysis NN cord-267234-waz0k0ms 165 69 by by IN cord-267234-waz0k0ms 165 70 maximum maximum JJ cord-267234-waz0k0ms 165 71 likelihood likelihood NN cord-267234-waz0k0ms 165 72 Advances advance NNS cord-267234-waz0k0ms 165 73 in in IN cord-267234-waz0k0ms 165 74 research research NN cord-267234-waz0k0ms 165 75 of of IN cord-267234-waz0k0ms 165 76 fish fish NN cord-267234-waz0k0ms 165 77 immune immune NN cord-267234-waz0k0ms 165 78 - - HYPH cord-267234-waz0k0ms 165 79 relevant relevant JJ cord-267234-waz0k0ms 165 80 genes gene NNS cord-267234-waz0k0ms 165 81 : : : cord-267234-waz0k0ms 165 82 a a DT cord-267234-waz0k0ms 165 83 comparative comparative JJ cord-267234-waz0k0ms 165 84 overview overview NN cord-267234-waz0k0ms 165 85 of of IN cord-267234-waz0k0ms 165 86 innate innate JJ cord-267234-waz0k0ms 165 87 and and CC cord-267234-waz0k0ms 165 88 adaptive adaptive JJ cord-267234-waz0k0ms 165 89 immunity immunity NN cord-267234-waz0k0ms 165 90 in in IN cord-267234-waz0k0ms 165 91 teleosts teleost NNS cord-267234-waz0k0ms 165 92 Characterization characterization NN cord-267234-waz0k0ms 165 93 of of IN cord-267234-waz0k0ms 165 94 the the DT cord-267234-waz0k0ms 165 95 CCR3 CCR3 NNP cord-267234-waz0k0ms 165 96 and and CC cord-267234-waz0k0ms 165 97 CCR9 CCR9 NNP cord-267234-waz0k0ms 165 98 genes gene NNS cord-267234-waz0k0ms 165 99 in in IN cord-267234-waz0k0ms 165 100 miiuy miiuy NNP cord-267234-waz0k0ms 165 101 croaker croaker NN cord-267234-waz0k0ms 165 102 and and CC cord-267234-waz0k0ms 165 103 different different JJ cord-267234-waz0k0ms 165 104 selection selection NN cord-267234-waz0k0ms 165 105 pressures pressure NNS cord-267234-waz0k0ms 165 106 imposed impose VBN cord-267234-waz0k0ms 165 107 on on IN cord-267234-waz0k0ms 165 108 different different JJ cord-267234-waz0k0ms 165 109 domains domain NNS cord-267234-waz0k0ms 165 110 between between IN cord-267234-waz0k0ms 165 111 mammals mammal NNS cord-267234-waz0k0ms 165 112 and and CC cord-267234-waz0k0ms 165 113 teleosts teleost NNS cord-267234-waz0k0ms 166 1 This this DT cord-267234-waz0k0ms 166 2 study study NN cord-267234-waz0k0ms 166 3 was be VBD cord-267234-waz0k0ms 166 4 supported support VBN cord-267234-waz0k0ms 166 5 by by IN cord-267234-waz0k0ms 166 6 National National NNP cord-267234-waz0k0ms 166 7 Natural Natural NNP cord-267234-waz0k0ms 166 8 Science Science NNP cord-267234-waz0k0ms 166 9 Foundation Foundation NNP cord-267234-waz0k0ms 166 10 of of IN cord-267234-waz0k0ms 166 11 China China NNP cord-267234-waz0k0ms 166 12 ( ( -LRB- cord-267234-waz0k0ms 166 13 31370049 31370049 CD cord-267234-waz0k0ms 166 14 ) ) -RRB- cord-267234-waz0k0ms 166 15 and and CC cord-267234-waz0k0ms 166 16 Zhejiang Zhejiang NNP cord-267234-waz0k0ms 166 17 Province Province NNP cord-267234-waz0k0ms 166 18 Natural Natural NNP cord-267234-waz0k0ms 166 19 Science Science NNP cord-267234-waz0k0ms 166 20 Foundation Foundation NNP cord-267234-waz0k0ms 166 21 of of IN cord-267234-waz0k0ms 166 22 Distinguished Distinguished NNP cord-267234-waz0k0ms 166 23 Young Young NNP cord-267234-waz0k0ms 166 24 Scientists Scientists NNPS cord-267234-waz0k0ms 166 25 ( ( -LRB- cord-267234-waz0k0ms 166 26 LR14C040001 lr14c040001 RB cord-267234-waz0k0ms 166 27 ) ) -RRB- cord-267234-waz0k0ms 166 28 . . . cord-267234-waz0k0ms 167 1 Supplementary supplementary JJ cord-267234-waz0k0ms 167 2 data datum NNS cord-267234-waz0k0ms 167 3 to to IN cord-267234-waz0k0ms 167 4 this this DT cord-267234-waz0k0ms 167 5 article article NN cord-267234-waz0k0ms 167 6 can can MD cord-267234-waz0k0ms 167 7 be be VB cord-267234-waz0k0ms 167 8 found find VBN cord-267234-waz0k0ms 167 9 online online RB cord-267234-waz0k0ms 167 10 at at IN cord-267234-waz0k0ms 167 11 doi:10.1016 doi:10.1016 RB cord-267234-waz0k0ms 168 1 /j.dci.2015.01.004 /j.dci.2015.01.004 NNP cord-267234-waz0k0ms 168 2 . . .