id	sid	tid	token	lemma	pos
cord-018103-czjjnlkf	1	1	key	key	NN
cord-018103-czjjnlkf	1	2	:	:	:
cord-018103-czjjnlkf	1	3	cord-018103-czjjnlkf	cord-018103-czjjnlkf	NNP
cord-018103-czjjnlkf	2	1	authors	author	NNS
cord-018103-czjjnlkf	2	2	:	:	:
cord-018103-czjjnlkf	2	3	Moon	Moon	NNP
cord-018103-czjjnlkf	2	4	,	,	,
cord-018103-czjjnlkf	2	5	Sanghoon	Sanghoon	NNP
cord-018103-czjjnlkf	2	6	;	;	:
cord-018103-czjjnlkf	2	7	Byun	Byun	NNP
cord-018103-czjjnlkf	2	8	,	,	,
cord-018103-czjjnlkf	2	9	Yanga	Yanga	NNP
cord-018103-czjjnlkf	2	10	;	;	:
cord-018103-czjjnlkf	2	11	Han	Han	NNP
cord-018103-czjjnlkf	2	12	,	,	,
cord-018103-czjjnlkf	3	1	Kyungsook	Kyungsook	NNP
cord-018103-czjjnlkf	3	2	title	title	NN
cord-018103-czjjnlkf	3	3	:	:	:
cord-018103-czjjnlkf	3	4	Prediction	prediction	NN
cord-018103-czjjnlkf	3	5	of	of	IN
cord-018103-czjjnlkf	3	6	Ribosomal	Ribosomal	NNP
cord-018103-czjjnlkf	3	7	-1	-1	NNP
cord-018103-czjjnlkf	3	8	Frameshifts	Frameshifts	NNP
cord-018103-czjjnlkf	3	9	in	in	IN
cord-018103-czjjnlkf	3	10	the	the	DT
cord-018103-czjjnlkf	3	11	Escherichia	Escherichia	NNP
cord-018103-czjjnlkf	3	12	coli	coli	VBZ
cord-018103-czjjnlkf	3	13	K12	K12	NNP
cord-018103-czjjnlkf	3	14	Genome	Genome	NNP
cord-018103-czjjnlkf	3	15	date	date	NN
cord-018103-czjjnlkf	3	16	:	:	:
cord-018103-czjjnlkf	3	17	2006	2006	CD
cord-018103-czjjnlkf	3	18	journal	journal	NNP
cord-018103-czjjnlkf	3	19	:	:	:
cord-018103-czjjnlkf	4	1	Computational	Computational	NNP
cord-018103-czjjnlkf	4	2	Intelligence	Intelligence	NNP
cord-018103-czjjnlkf	4	3	and	and	CC
cord-018103-czjjnlkf	4	4	Bioinformatics	Bioinformatics	NNP
cord-018103-czjjnlkf	4	5	DOI	DOI	NNP
cord-018103-czjjnlkf	4	6	:	:	:
cord-018103-czjjnlkf	5	1	10.1007/11816102_65	10.1007/11816102_65	CD
cord-018103-czjjnlkf	5	2	sha	sha	NNP
cord-018103-czjjnlkf	5	3	:	:	:
cord-018103-czjjnlkf	6	1	937b665c34abde05316890a5a9029c4052c9479e	937b665c34abde05316890a5a9029c4052c9479e	CD
cord-018103-czjjnlkf	6	2	doc_id	doc_id	CD
cord-018103-czjjnlkf	6	3	:	:	:
cord-018103-czjjnlkf	6	4	18103	18103	CD
cord-018103-czjjnlkf	6	5	cord_uid	cord_uid	NNS
cord-018103-czjjnlkf	6	6	:	:	:
cord-018103-czjjnlkf	6	7	czjjnlkf	czjjnlkf	NNP
cord-018103-czjjnlkf	6	8	Ribosomal	Ribosomal	NNP
cord-018103-czjjnlkf	6	9	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	6	10	at	at	IN
cord-018103-czjjnlkf	6	11	a	a	DT
cord-018103-czjjnlkf	6	12	particular	particular	JJ
cord-018103-czjjnlkf	6	13	site	site	NN
cord-018103-czjjnlkf	6	14	can	can	MD
cord-018103-czjjnlkf	6	15	yield	yield	VB
cord-018103-czjjnlkf	6	16	two	two	CD
cord-018103-czjjnlkf	6	17	protein	protein	NN
cord-018103-czjjnlkf	6	18	products	product	NNS
cord-018103-czjjnlkf	6	19	from	from	IN
cord-018103-czjjnlkf	6	20	one	one	CD
cord-018103-czjjnlkf	6	21	coding	code	VBG
cord-018103-czjjnlkf	6	22	sequence	sequence	NN
cord-018103-czjjnlkf	6	23	or	or	CC
cord-018103-czjjnlkf	6	24	one	one	CD
cord-018103-czjjnlkf	6	25	protein	protein	NN
cord-018103-czjjnlkf	6	26	product	product	NN
cord-018103-czjjnlkf	6	27	from	from	IN
cord-018103-czjjnlkf	6	28	two	two	CD
cord-018103-czjjnlkf	6	29	overlapping	overlap	VBG
cord-018103-czjjnlkf	6	30	open	open	JJ
cord-018103-czjjnlkf	6	31	reading	reading	NN
cord-018103-czjjnlkf	6	32	frames	frame	NNS
cord-018103-czjjnlkf	6	33	.	.	.
cord-018103-czjjnlkf	7	1	Many	many	JJ
cord-018103-czjjnlkf	7	2	organisms	organism	NNS
cord-018103-czjjnlkf	7	3	are	be	VBP
cord-018103-czjjnlkf	7	4	known	know	VBN
cord-018103-czjjnlkf	7	5	to	to	TO
cord-018103-czjjnlkf	7	6	utilize	utilize	VB
cord-018103-czjjnlkf	7	7	ribosomal	ribosomal	JJ
cord-018103-czjjnlkf	7	8	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	7	9	to	to	TO
cord-018103-czjjnlkf	7	10	express	express	VB
cord-018103-czjjnlkf	7	11	a	a	DT
cord-018103-czjjnlkf	7	12	minority	minority	NN
cord-018103-czjjnlkf	7	13	of	of	IN
cord-018103-czjjnlkf	7	14	genes	gene	NNS
cord-018103-czjjnlkf	7	15	.	.	.
cord-018103-czjjnlkf	8	1	However	however	RB
cord-018103-czjjnlkf	8	2	,	,	,
cord-018103-czjjnlkf	8	3	finding	find	VBG
cord-018103-czjjnlkf	8	4	ribosomal	ribosomal	JJ
cord-018103-czjjnlkf	8	5	frameshift	frameshift	NN
cord-018103-czjjnlkf	8	6	sites	site	NNS
cord-018103-czjjnlkf	8	7	by	by	IN
cord-018103-czjjnlkf	8	8	a	a	DT
cord-018103-czjjnlkf	8	9	computational	computational	JJ
cord-018103-czjjnlkf	8	10	method	method	NN
cord-018103-czjjnlkf	8	11	is	be	VBZ
cord-018103-czjjnlkf	8	12	difficult	difficult	JJ
cord-018103-czjjnlkf	8	13	because	because	IN
cord-018103-czjjnlkf	8	14	frameshift	frameshift	NN
cord-018103-czjjnlkf	8	15	signals	signal	NNS
cord-018103-czjjnlkf	8	16	are	be	VBP
cord-018103-czjjnlkf	8	17	diverse	diverse	JJ
cord-018103-czjjnlkf	8	18	and	and	CC
cord-018103-czjjnlkf	8	19	dependent	dependent	JJ
cord-018103-czjjnlkf	8	20	on	on	IN
cord-018103-czjjnlkf	8	21	the	the	DT
cord-018103-czjjnlkf	8	22	organisms	organism	NNS
cord-018103-czjjnlkf	8	23	and	and	CC
cord-018103-czjjnlkf	8	24	environments	environment	NNS
cord-018103-czjjnlkf	8	25	.	.	.
cord-018103-czjjnlkf	9	1	There	there	EX
cord-018103-czjjnlkf	9	2	are	be	VBP
cord-018103-czjjnlkf	9	3	few	few	JJ
cord-018103-czjjnlkf	9	4	computer	computer	NN
cord-018103-czjjnlkf	9	5	programs	program	NNS
cord-018103-czjjnlkf	9	6	available	available	JJ
cord-018103-czjjnlkf	9	7	for	for	IN
cord-018103-czjjnlkf	9	8	public	public	JJ
cord-018103-czjjnlkf	9	9	use	use	NN
cord-018103-czjjnlkf	9	10	to	to	TO
cord-018103-czjjnlkf	9	11	identify	identify	VB
cord-018103-czjjnlkf	9	12	frameshift	frameshift	NN
cord-018103-czjjnlkf	9	13	sites	site	NNS
cord-018103-czjjnlkf	9	14	from	from	IN
cord-018103-czjjnlkf	9	15	genomic	genomic	JJ
cord-018103-czjjnlkf	9	16	sequences	sequence	NNS
cord-018103-czjjnlkf	9	17	.	.	.
cord-018103-czjjnlkf	10	1	We	-PRON-	PRP
cord-018103-czjjnlkf	10	2	have	have	VBP
cord-018103-czjjnlkf	10	3	developed	develop	VBN
cord-018103-czjjnlkf	10	4	a	a	DT
cord-018103-czjjnlkf	10	5	web	web	NN
cord-018103-czjjnlkf	10	6	-	-	HYPH
cord-018103-czjjnlkf	10	7	based	base	VBN
cord-018103-czjjnlkf	10	8	application	application	NN
cord-018103-czjjnlkf	10	9	program	program	NN
cord-018103-czjjnlkf	10	10	called	call	VBN
cord-018103-czjjnlkf	10	11	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	10	12	for	for	IN
cord-018103-czjjnlkf	10	13	predicting	predict	VBG
cord-018103-czjjnlkf	10	14	frameshift	frameshift	NN
cord-018103-czjjnlkf	10	15	sites	site	NNS
cord-018103-czjjnlkf	10	16	of	of	IN
cord-018103-czjjnlkf	10	17	general	general	JJ
cord-018103-czjjnlkf	10	18	type	type	NN
cord-018103-czjjnlkf	10	19	.	.	.
cord-018103-czjjnlkf	11	1	We	-PRON-	PRP
cord-018103-czjjnlkf	11	2	tested	test	VBD
cord-018103-czjjnlkf	11	3	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	11	4	on	on	IN
cord-018103-czjjnlkf	11	5	the	the	DT
cord-018103-czjjnlkf	11	6	Escherichia	Escherichia	NNP
cord-018103-czjjnlkf	11	7	coli	coli	NNS
cord-018103-czjjnlkf	11	8	K12	K12	NNP
cord-018103-czjjnlkf	11	9	genome	genome	NN
cord-018103-czjjnlkf	11	10	to	to	TO
cord-018103-czjjnlkf	11	11	detect	detect	VB
cord-018103-czjjnlkf	11	12	potential	potential	JJ
cord-018103-czjjnlkf	11	13	-1	-1	NN
cord-018103-czjjnlkf	11	14	frameshifting	frameshifting	JJ
cord-018103-czjjnlkf	11	15	genes	gene	NNS
cord-018103-czjjnlkf	11	16	.	.	.
cord-018103-czjjnlkf	12	1	From	from	IN
cord-018103-czjjnlkf	12	2	the	the	DT
cord-018103-czjjnlkf	12	3	genome	genome	NN
cord-018103-czjjnlkf	12	4	sequence	sequence	NN
cord-018103-czjjnlkf	12	5	,	,	,
cord-018103-czjjnlkf	12	6	we	-PRON-	PRP
cord-018103-czjjnlkf	12	7	identified	identify	VBD
cord-018103-czjjnlkf	12	8	18,401	18,401	CD
cord-018103-czjjnlkf	12	9	frameshift	frameshift	NN
cord-018103-czjjnlkf	12	10	sites	site	NNS
cord-018103-czjjnlkf	12	11	following	follow	VBG
cord-018103-czjjnlkf	12	12	the	the	DT
cord-018103-czjjnlkf	12	13	X	X	NNP
cord-018103-czjjnlkf	12	14	XXY	XXY	NNP
cord-018103-czjjnlkf	12	15	YYZ	YYZ	NNP
cord-018103-czjjnlkf	12	16	motif	motif	NN
cord-018103-czjjnlkf	12	17	.	.	.
cord-018103-czjjnlkf	13	1	11,530	11,530	CD
cord-018103-czjjnlkf	13	2	frameshift	frameshift	NN
cord-018103-czjjnlkf	13	3	sites	site	NNS
cord-018103-czjjnlkf	13	4	out	out	IN
cord-018103-czjjnlkf	13	5	of	of	IN
cord-018103-czjjnlkf	13	6	the	the	DT
cord-018103-czjjnlkf	13	7	18,401	18,401	CD
cord-018103-czjjnlkf	13	8	sites	site	NNS
cord-018103-czjjnlkf	13	9	include	include	VBP
cord-018103-czjjnlkf	13	10	secondary	secondary	JJ
cord-018103-czjjnlkf	13	11	structures	structure	NNS
cord-018103-czjjnlkf	13	12	.	.	.
cord-018103-czjjnlkf	14	1	Comparison	comparison	NN
cord-018103-czjjnlkf	14	2	with	with	IN
cord-018103-czjjnlkf	14	3	the	the	DT
cord-018103-czjjnlkf	14	4	GenBank	GenBank	NNP
cord-018103-czjjnlkf	14	5	annotation	annotation	NN
cord-018103-czjjnlkf	14	6	produced	produce	VBD
cord-018103-czjjnlkf	14	7	11	11	CD
cord-018103-czjjnlkf	14	8	potential	potential	JJ
cord-018103-czjjnlkf	14	9	frameshift	frameshift	NN
cord-018103-czjjnlkf	14	10	sites	site	NNS
cord-018103-czjjnlkf	14	11	,	,	,
cord-018103-czjjnlkf	14	12	including	include	VBG
cord-018103-czjjnlkf	14	13	3	3	CD
cord-018103-czjjnlkf	14	14	known	know	VBN
cord-018103-czjjnlkf	14	15	frameshift	frameshift	NN
cord-018103-czjjnlkf	14	16	sites	site	NNS
cord-018103-czjjnlkf	14	17	.	.	.
cord-018103-czjjnlkf	15	1	The	the	DT
cord-018103-czjjnlkf	15	2	program	program	NN
cord-018103-czjjnlkf	15	3	is	be	VBZ
cord-018103-czjjnlkf	15	4	useful	useful	JJ
cord-018103-czjjnlkf	15	5	for	for	IN
cord-018103-czjjnlkf	15	6	analyzing	analyze	VBG
cord-018103-czjjnlkf	15	7	frameshifts	frameshift	NNS
cord-018103-czjjnlkf	15	8	of	of	IN
cord-018103-czjjnlkf	15	9	various	various	JJ
cord-018103-czjjnlkf	15	10	types	type	NNS
cord-018103-czjjnlkf	15	11	and	and	CC
cord-018103-czjjnlkf	15	12	for	for	IN
cord-018103-czjjnlkf	15	13	discovering	discover	VBG
cord-018103-czjjnlkf	15	14	new	new	JJ
cord-018103-czjjnlkf	15	15	genes	gene	NNS
cord-018103-czjjnlkf	15	16	expressed	express	VBN
cord-018103-czjjnlkf	15	17	by	by	IN
cord-018103-czjjnlkf	15	18	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	15	19	.	.	.
cord-018103-czjjnlkf	16	1	Ribosomes	ribosome	NNS
cord-018103-czjjnlkf	16	2	in	in	IN
cord-018103-czjjnlkf	16	3	general	general	JJ
cord-018103-czjjnlkf	16	4	terminate	terminate	VB
cord-018103-czjjnlkf	16	5	translation	translation	NN
cord-018103-czjjnlkf	16	6	at	at	IN
cord-018103-czjjnlkf	16	7	three	three	CD
cord-018103-czjjnlkf	16	8	kinds	kind	NNS
cord-018103-czjjnlkf	16	9	of	of	IN
cord-018103-czjjnlkf	16	10	stop	stop	NN
cord-018103-czjjnlkf	16	11	codons	codon	NNS
cord-018103-czjjnlkf	16	12	(	(	-LRB-
cord-018103-czjjnlkf	16	13	UAG	UAG	NNP
cord-018103-czjjnlkf	16	14	,	,	,
cord-018103-czjjnlkf	16	15	UGA	UGA	NNP
cord-018103-czjjnlkf	16	16	and	and	CC
cord-018103-czjjnlkf	16	17	UAA	UAA	NNP
cord-018103-czjjnlkf	16	18	)	)	-RRB-
cord-018103-czjjnlkf	16	19	,	,	,
cord-018103-czjjnlkf	16	20	but	but	CC
cord-018103-czjjnlkf	16	21	some	some	DT
cord-018103-czjjnlkf	16	22	ribosomes	ribosome	NNS
cord-018103-czjjnlkf	16	23	continue	continue	VBP
cord-018103-czjjnlkf	16	24	to	to	TO
cord-018103-czjjnlkf	16	25	decode	decode	VB
cord-018103-czjjnlkf	16	26	after	after	IN
cord-018103-czjjnlkf	16	27	the	the	DT
cord-018103-czjjnlkf	16	28	stop	stop	NN
cord-018103-czjjnlkf	16	29	codons	codon	NNS
cord-018103-czjjnlkf	16	30	.	.	.
cord-018103-czjjnlkf	17	1	This	this	DT
cord-018103-czjjnlkf	17	2	alternative	alternative	JJ
cord-018103-czjjnlkf	17	3	translational	translational	JJ
cord-018103-czjjnlkf	17	4	event	event	NN
cord-018103-czjjnlkf	17	5	is	be	VBZ
cord-018103-czjjnlkf	17	6	called	call	VBN
cord-018103-czjjnlkf	17	7	'	'	``
cord-018103-czjjnlkf	17	8	recoding	recoding	NN
cord-018103-czjjnlkf	17	9	'	'	''
cord-018103-czjjnlkf	17	10	.	.	.
cord-018103-czjjnlkf	18	1	Recoding	recoding	NN
cord-018103-czjjnlkf	18	2	events	event	NNS
cord-018103-czjjnlkf	18	3	include	include	VBP
cord-018103-czjjnlkf	18	4	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	18	5	,	,	,
cord-018103-czjjnlkf	18	6	read	read	VB
cord-018103-czjjnlkf	18	7	-	-	HYPH
cord-018103-czjjnlkf	18	8	through	through	NN
cord-018103-czjjnlkf	18	9	and	and	CC
cord-018103-czjjnlkf	18	10	bypassing	bypass	VBG
cord-018103-czjjnlkf	18	11	[	[	-LRB-
cord-018103-czjjnlkf	18	12	1	1	CD
cord-018103-czjjnlkf	18	13	]	]	-RRB-
cord-018103-czjjnlkf	18	14	[	[	-LRB-
cord-018103-czjjnlkf	18	15	2	2	CD
cord-018103-czjjnlkf	18	16	]	]	-RRB-
cord-018103-czjjnlkf	18	17	[	[	-LRB-
cord-018103-czjjnlkf	18	18	3	3	CD
cord-018103-czjjnlkf	18	19	]	]	-RRB-
cord-018103-czjjnlkf	18	20	.	.	.
cord-018103-czjjnlkf	19	1	In	in	IN
cord-018103-czjjnlkf	19	2	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	19	3	,	,	,
cord-018103-czjjnlkf	19	4	ribosomes	ribosome	NNS
cord-018103-czjjnlkf	19	5	shift	shift	VBP
cord-018103-czjjnlkf	19	6	reading	reading	NN
cord-018103-czjjnlkf	19	7	frame	frame	NN
cord-018103-czjjnlkf	19	8	by	by	IN
cord-018103-czjjnlkf	19	9	one	one	CD
cord-018103-czjjnlkf	19	10	or	or	CC
cord-018103-czjjnlkf	19	11	more	more	JJR
cord-018103-czjjnlkf	19	12	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	19	13	at	at	IN
cord-018103-czjjnlkf	19	14	a	a	DT
cord-018103-czjjnlkf	19	15	specific	specific	JJ
cord-018103-czjjnlkf	19	16	mRNA	mrna	NN
cord-018103-czjjnlkf	19	17	signal	signal	NN
cord-018103-czjjnlkf	19	18	between	between	IN
cord-018103-czjjnlkf	19	19	overlapping	overlap	VBG
cord-018103-czjjnlkf	19	20	genes	gene	NNS
cord-018103-czjjnlkf	19	21	[	[	-LRB-
cord-018103-czjjnlkf	19	22	4	4	CD
cord-018103-czjjnlkf	19	23	]	]	-RRB-
cord-018103-czjjnlkf	19	24	.	.	.
cord-018103-czjjnlkf	20	1	Frameshifts	frameshift	NNS
cord-018103-czjjnlkf	20	2	are	be	VBP
cord-018103-czjjnlkf	20	3	classified	classify	VBN
cord-018103-czjjnlkf	20	4	into	into	IN
cord-018103-czjjnlkf	20	5	different	different	JJ
cord-018103-czjjnlkf	20	6	types	type	NNS
cord-018103-czjjnlkf	20	7	depending	depend	VBG
cord-018103-czjjnlkf	20	8	on	on	IN
cord-018103-czjjnlkf	20	9	the	the	DT
cord-018103-czjjnlkf	20	10	number	number	NN
cord-018103-czjjnlkf	20	11	of	of	IN
cord-018103-czjjnlkf	20	12	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	20	13	shifted	shift	VBN
cord-018103-czjjnlkf	20	14	and	and	CC
cord-018103-czjjnlkf	20	15	the	the	DT
cord-018103-czjjnlkf	20	16	shifting	shift	VBG
cord-018103-czjjnlkf	20	17	direction	direction	NN
cord-018103-czjjnlkf	20	18	.	.	.
cord-018103-czjjnlkf	21	1	The	the	DT
cord-018103-czjjnlkf	21	2	most	most	RBS
cord-018103-czjjnlkf	21	3	common	common	JJ
cord-018103-czjjnlkf	21	4	type	type	NN
cord-018103-czjjnlkf	21	5	is	be	VBZ
cord-018103-czjjnlkf	21	6	a	a	DT
cord-018103-czjjnlkf	21	7	-1	-1	NN
cord-018103-czjjnlkf	21	8	frameshift	frameshift	NN
cord-018103-czjjnlkf	21	9	,	,	,
cord-018103-czjjnlkf	21	10	in	in	IN
cord-018103-czjjnlkf	21	11	which	which	WDT
cord-018103-czjjnlkf	21	12	the	the	DT
cord-018103-czjjnlkf	21	13	ribosome	ribosome	NN
cord-018103-czjjnlkf	21	14	slips	slip	VBZ
cord-018103-czjjnlkf	21	15	a	a	DT
cord-018103-czjjnlkf	21	16	single	single	JJ
cord-018103-czjjnlkf	21	17	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	21	18	in	in	IN
cord-018103-czjjnlkf	21	19	the	the	DT
cord-018103-czjjnlkf	21	20	upstream	upstream	JJ
cord-018103-czjjnlkf	21	21	direction	direction	NN
cord-018103-czjjnlkf	21	22	.	.	.
cord-018103-czjjnlkf	22	1	-1	-1	.
cord-018103-czjjnlkf	23	1	frameshifting	frameshifting	NNP
cord-018103-czjjnlkf	23	2	requires	require	VBZ
cord-018103-czjjnlkf	23	3	a	a	DT
cord-018103-czjjnlkf	23	4	frameshift	frameshift	NN
cord-018103-czjjnlkf	23	5	cassette	cassette	NN
cord-018103-czjjnlkf	23	6	that	that	WDT
cord-018103-czjjnlkf	23	7	consists	consist	VBZ
cord-018103-czjjnlkf	23	8	of	of	IN
cord-018103-czjjnlkf	23	9	a	a	DT
cord-018103-czjjnlkf	23	10	slippery	slippery	JJ
cord-018103-czjjnlkf	23	11	site	site	NN
cord-018103-czjjnlkf	23	12	,	,	,
cord-018103-czjjnlkf	23	13	a	a	DT
cord-018103-czjjnlkf	23	14	stimulatory	stimulatory	JJ
cord-018103-czjjnlkf	23	15	RNA	RNA	NNP
cord-018103-czjjnlkf	23	16	structure	structure	NN
cord-018103-czjjnlkf	23	17	and	and	CC
cord-018103-czjjnlkf	23	18	a	a	DT
cord-018103-czjjnlkf	23	19	spacer	spacer	NN
cord-018103-czjjnlkf	23	20	.	.	.
cord-018103-czjjnlkf	24	1	+1	+1	NFP
cord-018103-czjjnlkf	24	2	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	24	3	are	be	VBP
cord-018103-czjjnlkf	24	4	much	much	RB
cord-018103-czjjnlkf	24	5	less	less	RBR
cord-018103-czjjnlkf	24	6	common	common	JJ
cord-018103-czjjnlkf	24	7	than	than	IN
cord-018103-czjjnlkf	24	8	-1	-1	NNP
cord-018103-czjjnlkf	24	9	frameshifts	frameshift	NNS
cord-018103-czjjnlkf	24	10	,	,	,
cord-018103-czjjnlkf	24	11	but	but	CC
cord-018103-czjjnlkf	24	12	have	have	VBP
cord-018103-czjjnlkf	24	13	been	be	VBN
cord-018103-czjjnlkf	24	14	observed	observe	VBN
cord-018103-czjjnlkf	24	15	in	in	IN
cord-018103-czjjnlkf	24	16	diverse	diverse	JJ
cord-018103-czjjnlkf	24	17	organisms	organism	NNS
cord-018103-czjjnlkf	24	18	[	[	-LRB-
cord-018103-czjjnlkf	24	19	1	1	CD
cord-018103-czjjnlkf	24	20	]	]	-RRB-
cord-018103-czjjnlkf	24	21	.	.	.
cord-018103-czjjnlkf	25	1	No	no	DT
cord-018103-czjjnlkf	25	2	program	program	NN
cord-018103-czjjnlkf	25	3	exists	exist	VBZ
cord-018103-czjjnlkf	25	4	to	to	TO
cord-018103-czjjnlkf	25	5	predict	predict	VB
cord-018103-czjjnlkf	25	6	general	general	JJ
cord-018103-czjjnlkf	25	7	types	type	NNS
cord-018103-czjjnlkf	25	8	of	of	IN
cord-018103-czjjnlkf	25	9	frameshift	frameshift	NN
cord-018103-czjjnlkf	25	10	.	.	.
cord-018103-czjjnlkf	26	1	In	in	IN
cord-018103-czjjnlkf	26	2	addition	addition	NN
cord-018103-czjjnlkf	26	3	,	,	,
cord-018103-czjjnlkf	26	4	existing	exist	VBG
cord-018103-czjjnlkf	26	5	computational	computational	JJ
cord-018103-czjjnlkf	26	6	models	model	NNS
cord-018103-czjjnlkf	26	7	predict	predict	VBP
cord-018103-czjjnlkf	26	8	too	too	RB
cord-018103-czjjnlkf	26	9	many	many	JJ
cord-018103-czjjnlkf	26	10	false	false	JJ
cord-018103-czjjnlkf	26	11	positives	positive	NNS
cord-018103-czjjnlkf	26	12	.	.	.
cord-018103-czjjnlkf	27	1	In	in	IN
cord-018103-czjjnlkf	27	2	previous	previous	JJ
cord-018103-czjjnlkf	27	3	work	work	NN
cord-018103-czjjnlkf	27	4	we	-PRON-	PRP
cord-018103-czjjnlkf	27	5	developed	develop	VBD
cord-018103-czjjnlkf	27	6	a	a	DT
cord-018103-czjjnlkf	27	7	program	program	NN
cord-018103-czjjnlkf	27	8	called	call	VBN
cord-018103-czjjnlkf	27	9	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	28	1	(	(	-LRB-
cord-018103-czjjnlkf	28	2	Frameshift	Frameshift	NNP
cord-018103-czjjnlkf	28	3	Signal	Signal	NNP
cord-018103-czjjnlkf	28	4	Finder	Finder	NNP
cord-018103-czjjnlkf	28	5	)	)	-RRB-
cord-018103-czjjnlkf	28	6	for	for	IN
cord-018103-czjjnlkf	28	7	predicting	predict	VBG
cord-018103-czjjnlkf	28	8	-1	-1	NN
cord-018103-czjjnlkf	28	9	and	and	CC
cord-018103-czjjnlkf	28	10	+1	+1	HYPH
cord-018103-czjjnlkf	28	11	frameshift	frameshift	NN
cord-018103-czjjnlkf	28	12	sites	site	NNS
cord-018103-czjjnlkf	28	13	[	[	-LRB-
cord-018103-czjjnlkf	28	14	5	5	CD
cord-018103-czjjnlkf	28	15	]	]	-RRB-
cord-018103-czjjnlkf	28	16	.	.	.
cord-018103-czjjnlkf	29	1	That	that	DT
cord-018103-czjjnlkf	29	2	program	program	NN
cord-018103-czjjnlkf	29	3	is	be	VBZ
cord-018103-czjjnlkf	29	4	written	write	VBN
cord-018103-czjjnlkf	29	5	in	in	IN
cord-018103-czjjnlkf	29	6	Microsoft	Microsoft	NNP
cord-018103-czjjnlkf	29	7	C	C	NNP
cord-018103-czjjnlkf	29	8	#	#	NN
cord-018103-czjjnlkf	29	9	and	and	CC
cord-018103-czjjnlkf	29	10	is	be	VBZ
cord-018103-czjjnlkf	29	11	executable	executable	JJ
cord-018103-czjjnlkf	29	12	on	on	IN
cord-018103-czjjnlkf	29	13	Windows	Windows	NNP
cord-018103-czjjnlkf	29	14	systems	system	NNS
cord-018103-czjjnlkf	29	15	only	only	RB
cord-018103-czjjnlkf	29	16	.	.	.
cord-018103-czjjnlkf	30	1	To	to	TO
cord-018103-czjjnlkf	30	2	remove	remove	VB
cord-018103-czjjnlkf	30	3	these	these	DT
cord-018103-czjjnlkf	30	4	limitations	limitation	NNS
cord-018103-czjjnlkf	30	5	and	and	CC
cord-018103-czjjnlkf	30	6	to	to	TO
cord-018103-czjjnlkf	30	7	handle	handle	VB
cord-018103-czjjnlkf	30	8	frameshifts	frameshift	NNS
cord-018103-czjjnlkf	30	9	of	of	IN
cord-018103-czjjnlkf	30	10	general	general	JJ
cord-018103-czjjnlkf	30	11	type	type	NN
cord-018103-czjjnlkf	30	12	,	,	,
cord-018103-czjjnlkf	30	13	we	-PRON-	PRP
cord-018103-czjjnlkf	30	14	developed	develop	VBD
cord-018103-czjjnlkf	30	15	a	a	DT
cord-018103-czjjnlkf	30	16	new	new	JJ
cord-018103-czjjnlkf	30	17	web	web	NN
cord-018103-czjjnlkf	30	18	-	-	HYPH
cord-018103-czjjnlkf	30	19	based	base	VBN
cord-018103-czjjnlkf	30	20	application	application	NN
cord-018103-czjjnlkf	30	21	called	call	VBN
cord-018103-czjjnlkf	30	22	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	30	23	.	.	.
cord-018103-czjjnlkf	31	1	Users	user	NNS
cord-018103-czjjnlkf	31	2	can	can	MD
cord-018103-czjjnlkf	31	3	predict	predict	VB
cord-018103-czjjnlkf	31	4	frameshift	frameshift	NN
cord-018103-czjjnlkf	31	5	sites	site	NNS
cord-018103-czjjnlkf	31	6	of	of	IN
cord-018103-czjjnlkf	31	7	any	any	DT
cord-018103-czjjnlkf	31	8	type	type	NN
cord-018103-czjjnlkf	31	9	online	online	RB
cord-018103-czjjnlkf	31	10	from	from	IN
cord-018103-czjjnlkf	31	11	any	any	DT
cord-018103-czjjnlkf	31	12	web	web	NN
cord-018103-czjjnlkf	31	13	browser	browser	NN
cord-018103-czjjnlkf	31	14	and	and	CC
cord-018103-czjjnlkf	31	15	operating	operating	NN
cord-018103-czjjnlkf	31	16	system	system	NN
cord-018103-czjjnlkf	31	17	.	.	.
cord-018103-czjjnlkf	32	1	In	in	IN
cord-018103-czjjnlkf	32	2	previous	previous	JJ
cord-018103-czjjnlkf	32	3	experimental	experimental	JJ
cord-018103-czjjnlkf	32	4	results	result	NNS
cord-018103-czjjnlkf	32	5	of	of	IN
cord-018103-czjjnlkf	32	6	testing	test	VBG
cord-018103-czjjnlkf	32	7	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	32	8	on	on	IN
cord-018103-czjjnlkf	32	9	~190	~190	NFP
cord-018103-czjjnlkf	32	10	genomic	genomic	JJ
cord-018103-czjjnlkf	32	11	and	and	CC
cord-018103-czjjnlkf	32	12	partial	partial	JJ
cord-018103-czjjnlkf	32	13	DNA	dna	NN
cord-018103-czjjnlkf	32	14	sequences	sequence	NNS
cord-018103-czjjnlkf	32	15	showed	show	VBD
cord-018103-czjjnlkf	32	16	that	that	IN
cord-018103-czjjnlkf	32	17	it	-PRON-	PRP
cord-018103-czjjnlkf	32	18	predicted	predict	VBD
cord-018103-czjjnlkf	32	19	frameshift	frameshift	NN
cord-018103-czjjnlkf	32	20	sites	site	NNS
cord-018103-czjjnlkf	32	21	efficiently	efficiently	RB
cord-018103-czjjnlkf	32	22	and	and	CC
cord-018103-czjjnlkf	32	23	with	with	IN
cord-018103-czjjnlkf	32	24	greater	great	JJR
cord-018103-czjjnlkf	32	25	sensitivity	sensitivity	NN
cord-018103-czjjnlkf	32	26	and	and	CC
cord-018103-czjjnlkf	32	27	specificity	specificity	NN
cord-018103-czjjnlkf	32	28	than	than	IN
cord-018103-czjjnlkf	32	29	other	other	JJ
cord-018103-czjjnlkf	32	30	programs	program	NNS
cord-018103-czjjnlkf	32	31	,	,	,
cord-018103-czjjnlkf	32	32	because	because	IN
cord-018103-czjjnlkf	32	33	it	-PRON-	PRP
cord-018103-czjjnlkf	32	34	focused	focus	VBD
cord-018103-czjjnlkf	32	35	on	on	IN
cord-018103-czjjnlkf	32	36	the	the	DT
cord-018103-czjjnlkf	32	37	overlapping	overlap	VBG
cord-018103-czjjnlkf	32	38	regions	region	NNS
cord-018103-czjjnlkf	32	39	of	of	IN
cord-018103-czjjnlkf	32	40	ORFs	orf	NNS
cord-018103-czjjnlkf	32	41	and	and	CC
cord-018103-czjjnlkf	32	42	prioritized	prioritize	VBN
cord-018103-czjjnlkf	32	43	candidate	candidate	NN
cord-018103-czjjnlkf	32	44	signals	signal	NNS
cord-018103-czjjnlkf	32	45	(	(	-LRB-
cord-018103-czjjnlkf	32	46	For	for	IN
cord-018103-czjjnlkf	32	47	-1	-1	NNP
cord-018103-czjjnlkf	32	48	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	32	49	,	,	,
cord-018103-czjjnlkf	32	50	sensitivity	sensitivity	NN
cord-018103-czjjnlkf	32	51	was	be	VBD
cord-018103-czjjnlkf	32	52	0.88	0.88	CD
cord-018103-czjjnlkf	32	53	and	and	CC
cord-018103-czjjnlkf	32	54	specificity	specificity	NN
cord-018103-czjjnlkf	32	55	0.97	0.97	CD
cord-018103-czjjnlkf	32	56	;	;	:
cord-018103-czjjnlkf	32	57	for	for	IN
cord-018103-czjjnlkf	32	58	+1	+1	LS
cord-018103-czjjnlkf	32	59	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	32	60	,	,	,
cord-018103-czjjnlkf	32	61	sensitivity	sensitivity	NN
cord-018103-czjjnlkf	32	62	was	be	VBD
cord-018103-czjjnlkf	32	63	0.91	0.91	CD
cord-018103-czjjnlkf	32	64	and	and	CC
cord-018103-czjjnlkf	32	65	specificity	specificity	NN
cord-018103-czjjnlkf	32	66	0.94	0.94	CD
cord-018103-czjjnlkf	32	67	)	)	-RRB-
cord-018103-czjjnlkf	33	1	[	[	-LRB-
cord-018103-czjjnlkf	33	2	5	5	CD
cord-018103-czjjnlkf	33	3	]	]	-RRB-
cord-018103-czjjnlkf	33	4	[	[	-LRB-
cord-018103-czjjnlkf	33	5	6	6	CD
cord-018103-czjjnlkf	33	6	]	]	-RRB-
cord-018103-czjjnlkf	33	7	[	[	-LRB-
cord-018103-czjjnlkf	33	8	7	7	CD
cord-018103-czjjnlkf	33	9	]	]	-RRB-
cord-018103-czjjnlkf	33	10	.	.	.
cord-018103-czjjnlkf	34	1	Using	use	VBG
cord-018103-czjjnlkf	34	2	the	the	DT
cord-018103-czjjnlkf	34	3	web	web	NN
cord-018103-czjjnlkf	34	4	service	service	NN
cord-018103-czjjnlkf	34	5	of	of	IN
cord-018103-czjjnlkf	34	6	the	the	DT
cord-018103-czjjnlkf	34	7	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	34	8	,	,	,
cord-018103-czjjnlkf	34	9	we	-PRON-	PRP
cord-018103-czjjnlkf	34	10	analyzed	analyze	VBD
cord-018103-czjjnlkf	34	11	the	the	DT
cord-018103-czjjnlkf	34	12	Escherichia	Escherichia	NNP
cord-018103-czjjnlkf	34	13	coli	coli	NNS
cord-018103-czjjnlkf	34	14	(	(	-LRB-
cord-018103-czjjnlkf	34	15	E.	E.	NNP
cord-018103-czjjnlkf	34	16	coli	coli	NNS
cord-018103-czjjnlkf	34	17	)	)	-RRB-
cord-018103-czjjnlkf	35	1	K12	K12	NNP
cord-018103-czjjnlkf	35	2	genome	genome	NN
cord-018103-czjjnlkf	35	3	sequence	sequence	NN
cord-018103-czjjnlkf	35	4	to	to	TO
cord-018103-czjjnlkf	35	5	find	find	VB
cord-018103-czjjnlkf	35	6	the	the	DT
cord-018103-czjjnlkf	35	7	-1	-1	NN
cord-018103-czjjnlkf	35	8	frameshifting	frameshifting	JJ
cord-018103-czjjnlkf	35	9	genes	gene	NNS
cord-018103-czjjnlkf	35	10	with	with	IN
cord-018103-czjjnlkf	35	11	high	high	JJ
cord-018103-czjjnlkf	35	12	probability	probability	NN
cord-018103-czjjnlkf	35	13	.	.	.
cord-018103-czjjnlkf	36	1	From	from	IN
cord-018103-czjjnlkf	36	2	the	the	DT
cord-018103-czjjnlkf	36	3	E.	E.	NNP
cord-018103-czjjnlkf	36	4	coli	coli	VBZ
cord-018103-czjjnlkf	36	5	K12	K12	NNP
cord-018103-czjjnlkf	36	6	genome	genome	NN
cord-018103-czjjnlkf	36	7	sequence	sequence	NN
cord-018103-czjjnlkf	36	8	,	,	,
cord-018103-czjjnlkf	36	9	we	-PRON-	PRP
cord-018103-czjjnlkf	36	10	found	find	VBD
cord-018103-czjjnlkf	36	11	18,401	18,401	CD
cord-018103-czjjnlkf	36	12	frameshift	frameshift	NN
cord-018103-czjjnlkf	36	13	sites	site	NNS
cord-018103-czjjnlkf	36	14	after	after	IN
cord-018103-czjjnlkf	36	15	the	the	DT
cord-018103-czjjnlkf	36	16	X	x	NN
cord-018103-czjjnlkf	36	17	XXY	XXY	NNP
cord-018103-czjjnlkf	36	18	YYZ	YYZ	NNP
cord-018103-czjjnlkf	36	19	motif	motif	NN
cord-018103-czjjnlkf	36	20	.	.	.
cord-018103-czjjnlkf	37	1	Among	among	IN
cord-018103-czjjnlkf	37	2	these	these	DT
cord-018103-czjjnlkf	37	3	sequences	sequence	NNS
cord-018103-czjjnlkf	37	4	,	,	,
cord-018103-czjjnlkf	37	5	11,530	11,530	CD
cord-018103-czjjnlkf	37	6	frameshift	frameshift	NN
cord-018103-czjjnlkf	37	7	sites	site	NNS
cord-018103-czjjnlkf	37	8	included	include	VBD
cord-018103-czjjnlkf	37	9	secondary	secondary	JJ
cord-018103-czjjnlkf	37	10	structure	structure	NN
cord-018103-czjjnlkf	37	11	such	such	JJ
cord-018103-czjjnlkf	37	12	as	as	IN
cord-018103-czjjnlkf	37	13	pseudoknots	pseudoknot	NNS
cord-018103-czjjnlkf	37	14	or	or	CC
cord-018103-czjjnlkf	37	15	stem	stem	NN
cord-018103-czjjnlkf	37	16	-	-	HYPH
cord-018103-czjjnlkf	37	17	loops	loop	NNS
cord-018103-czjjnlkf	37	18	.	.	.
cord-018103-czjjnlkf	38	1	Using	use	VBG
cord-018103-czjjnlkf	38	2	the	the	DT
cord-018103-czjjnlkf	38	3	GenBank	GenBank	NNP
cord-018103-czjjnlkf	38	4	description	description	NN
cord-018103-czjjnlkf	38	5	we	-PRON-	PRP
cord-018103-czjjnlkf	38	6	found	find	VBD
cord-018103-czjjnlkf	38	7	312	312	CD
cord-018103-czjjnlkf	38	8	overlapping	overlap	VBG
cord-018103-czjjnlkf	38	9	regions	region	NNS
cord-018103-czjjnlkf	38	10	of	of	IN
cord-018103-czjjnlkf	38	11	two	two	CD
cord-018103-czjjnlkf	38	12	genes	gene	NNS
cord-018103-czjjnlkf	38	13	with	with	IN
cord-018103-czjjnlkf	38	14	more	more	JJR
cord-018103-czjjnlkf	38	15	than	than	IN
cord-018103-czjjnlkf	38	16	1	1	CD
cord-018103-czjjnlkf	38	17	base	base	NN
cord-018103-czjjnlkf	38	18	.	.	.
cord-018103-czjjnlkf	39	1	Using	use	VBG
cord-018103-czjjnlkf	39	2	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	39	3	we	-PRON-	PRP
cord-018103-czjjnlkf	39	4	found	find	VBD
cord-018103-czjjnlkf	39	5	309	309	CD
cord-018103-czjjnlkf	39	6	overlapping	overlap	VBG
cord-018103-czjjnlkf	39	7	regions	region	NNS
cord-018103-czjjnlkf	39	8	with	with	IN
cord-018103-czjjnlkf	39	9	more	more	JJR
cord-018103-czjjnlkf	39	10	than	than	IN
cord-018103-czjjnlkf	39	11	30	30	CD
cord-018103-czjjnlkf	39	12	bases	basis	NNS
cord-018103-czjjnlkf	39	13	.	.	.
cord-018103-czjjnlkf	40	1	After	after	IN
cord-018103-czjjnlkf	40	2	removing	remove	VBG
cord-018103-czjjnlkf	40	3	redundant	redundant	JJ
cord-018103-czjjnlkf	40	4	ones	one	NNS
cord-018103-czjjnlkf	40	5	,	,	,
cord-018103-czjjnlkf	40	6	we	-PRON-	PRP
cord-018103-czjjnlkf	40	7	obtained	obtain	VBD
cord-018103-czjjnlkf	40	8	195	195	CD
cord-018103-czjjnlkf	40	9	overlapping	overlap	VBG
cord-018103-czjjnlkf	40	10	regions	region	NNS
cord-018103-czjjnlkf	40	11	and	and	CC
cord-018103-czjjnlkf	40	12	found	find	VBD
cord-018103-czjjnlkf	40	13	66	66	CD
cord-018103-czjjnlkf	40	14	potential	potential	JJ
cord-018103-czjjnlkf	40	15	frameshift	frameshift	NN
cord-018103-czjjnlkf	40	16	sites	site	NNS
cord-018103-czjjnlkf	40	17	in	in	IN
cord-018103-czjjnlkf	40	18	the	the	DT
cord-018103-czjjnlkf	40	19	195	195	CD
cord-018103-czjjnlkf	40	20	overlapping	overlap	VBG
cord-018103-czjjnlkf	40	21	regions	region	NNS
cord-018103-czjjnlkf	40	22	.	.	.
cord-018103-czjjnlkf	41	1	Among	among	IN
cord-018103-czjjnlkf	41	2	these	these	DT
cord-018103-czjjnlkf	41	3	sites	site	NNS
cord-018103-czjjnlkf	41	4	,	,	,
cord-018103-czjjnlkf	41	5	11	11	CD
cord-018103-czjjnlkf	41	6	sites	site	NNS
cord-018103-czjjnlkf	41	7	including	include	VBG
cord-018103-czjjnlkf	41	8	3	3	CD
cord-018103-czjjnlkf	41	9	known	know	VBN
cord-018103-czjjnlkf	41	10	frameshift	frameshift	NN
cord-018103-czjjnlkf	41	11	sites	site	NNS
cord-018103-czjjnlkf	41	12	were	be	VBD
cord-018103-czjjnlkf	41	13	considered	consider	VBN
cord-018103-czjjnlkf	41	14	significant	significant	JJ
cord-018103-czjjnlkf	41	15	based	base	VBN
cord-018103-czjjnlkf	41	16	on	on	IN
cord-018103-czjjnlkf	41	17	the	the	DT
cord-018103-czjjnlkf	41	18	gene	gene	NN
cord-018103-czjjnlkf	41	19	length	length	NN
cord-018103-czjjnlkf	41	20	,	,	,
cord-018103-czjjnlkf	41	21	shape	shape	NN
cord-018103-czjjnlkf	41	22	and	and	CC
cord-018103-czjjnlkf	41	23	the	the	DT
cord-018103-czjjnlkf	41	24	length	length	NN
cord-018103-czjjnlkf	41	25	of	of	IN
cord-018103-czjjnlkf	41	26	overlapping	overlap	VBG
cord-018103-czjjnlkf	41	27	region	region	NN
cord-018103-czjjnlkf	41	28	.	.	.
cord-018103-czjjnlkf	42	1	We	-PRON-	PRP
cord-018103-czjjnlkf	42	2	believe	believe	VBP
cord-018103-czjjnlkf	42	3	that	that	IN
cord-018103-czjjnlkf	42	4	at	at	RB
cord-018103-czjjnlkf	42	5	least	least	JJS
cord-018103-czjjnlkf	42	6	4	4	CD
cord-018103-czjjnlkf	42	7	new	new	JJ
cord-018103-czjjnlkf	42	8	frameshift	frameshift	NN
cord-018103-czjjnlkf	42	9	sites	site	NNS
cord-018103-czjjnlkf	42	10	are	be	VBP
cord-018103-czjjnlkf	42	11	highly	highly	RB
cord-018103-czjjnlkf	42	12	likely	likely	JJ
cord-018103-czjjnlkf	42	13	to	to	TO
cord-018103-czjjnlkf	42	14	be	be	VB
cord-018103-czjjnlkf	42	15	frameshift	frameshift	NN
cord-018103-czjjnlkf	42	16	sites	site	NNS
cord-018103-czjjnlkf	42	17	.	.	.
cord-018103-czjjnlkf	43	1	The	the	DT
cord-018103-czjjnlkf	43	2	cassettes	cassette	NNS
cord-018103-czjjnlkf	43	3	of	of	IN
cord-018103-czjjnlkf	43	4	-1	-1	CD
cord-018103-czjjnlkf	43	5	frameshift	frameshift	NN
cord-018103-czjjnlkf	43	6	consist	consist	NN
cord-018103-czjjnlkf	43	7	of	of	IN
cord-018103-czjjnlkf	43	8	three	three	CD
cord-018103-czjjnlkf	43	9	parts	part	NNS
cord-018103-czjjnlkf	43	10	:	:	:
cord-018103-czjjnlkf	43	11	slippery	slippery	JJ
cord-018103-czjjnlkf	43	12	site	site	NN
cord-018103-czjjnlkf	43	13	,	,	,
cord-018103-czjjnlkf	43	14	spacer	spacer	NN
cord-018103-czjjnlkf	43	15	and	and	CC
cord-018103-czjjnlkf	43	16	secondary	secondary	JJ
cord-018103-czjjnlkf	43	17	structure	structure	NN
cord-018103-czjjnlkf	43	18	.	.	.
cord-018103-czjjnlkf	44	1	The	the	DT
cord-018103-czjjnlkf	44	2	slippery	slippery	JJ
cord-018103-czjjnlkf	44	3	site	site	NN
cord-018103-czjjnlkf	44	4	is	be	VBZ
cord-018103-czjjnlkf	44	5	usually	usually	RB
cord-018103-czjjnlkf	44	6	a	a	DT
cord-018103-czjjnlkf	44	7	heptameric	heptameric	JJ
cord-018103-czjjnlkf	44	8	sequence	sequence	NN
cord-018103-czjjnlkf	44	9	in	in	IN
cord-018103-czjjnlkf	44	10	the	the	DT
cord-018103-czjjnlkf	44	11	form	form	NN
cord-018103-czjjnlkf	44	12	X	x	NN
cord-018103-czjjnlkf	44	13	XXY	XXY	NNP
cord-018103-czjjnlkf	44	14	YYZ	YYZ	NNP
cord-018103-czjjnlkf	44	15	(	(	-LRB-
cord-018103-czjjnlkf	44	16	in	in	IN
cord-018103-czjjnlkf	44	17	the	the	DT
cord-018103-czjjnlkf	44	18	incoming	incoming	JJ
cord-018103-czjjnlkf	44	19	0-frame	0-frame	CD
cord-018103-czjjnlkf	44	20	)	)	-RRB-
cord-018103-czjjnlkf	44	21	,	,	,
cord-018103-czjjnlkf	44	22	where	where	WRB
cord-018103-czjjnlkf	44	23	X	X	NNP
cord-018103-czjjnlkf	44	24	,	,	,
cord-018103-czjjnlkf	44	25	Y	Y	NNP
cord-018103-czjjnlkf	44	26	and	and	CC
cord-018103-czjjnlkf	44	27	Z	z	NN
cord-018103-czjjnlkf	44	28	can	can	MD
cord-018103-czjjnlkf	44	29	be	be	VB
cord-018103-czjjnlkf	44	30	same	same	JJ
cord-018103-czjjnlkf	44	31	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	44	32	[	[	-LRB-
cord-018103-czjjnlkf	44	33	5	5	CD
cord-018103-czjjnlkf	44	34	]	]	-RRB-
cord-018103-czjjnlkf	44	35	[	[	-LRB-
cord-018103-czjjnlkf	44	36	6	6	CD
cord-018103-czjjnlkf	44	37	]	]	-RRB-
cord-018103-czjjnlkf	44	38	[	[	-LRB-
cord-018103-czjjnlkf	44	39	7	7	CD
cord-018103-czjjnlkf	44	40	]	]	-RRB-
cord-018103-czjjnlkf	44	41	.	.	.
cord-018103-czjjnlkf	45	1	The	the	DT
cord-018103-czjjnlkf	45	2	spacer	spacer	NN
cord-018103-czjjnlkf	45	3	is	be	VBZ
cord-018103-czjjnlkf	45	4	a	a	DT
cord-018103-czjjnlkf	45	5	short	short	JJ
cord-018103-czjjnlkf	45	6	sequence	sequence	NN
cord-018103-czjjnlkf	45	7	of	of	IN
cord-018103-czjjnlkf	45	8	5	5	CD
cord-018103-czjjnlkf	45	9	to	to	TO
cord-018103-czjjnlkf	45	10	11	11	CD
cord-018103-czjjnlkf	45	11	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	45	12	separating	separate	VBG
cord-018103-czjjnlkf	45	13	slippery	slippery	JJ
cord-018103-czjjnlkf	45	14	site	site	NN
cord-018103-czjjnlkf	45	15	and	and	CC
cord-018103-czjjnlkf	45	16	the	the	DT
cord-018103-czjjnlkf	45	17	downstream	downstream	JJ
cord-018103-czjjnlkf	45	18	secondary	secondary	JJ
cord-018103-czjjnlkf	45	19	structure	structure	NN
cord-018103-czjjnlkf	45	20	.	.	.
cord-018103-czjjnlkf	46	1	The	the	DT
cord-018103-czjjnlkf	46	2	downstream	downstream	JJ
cord-018103-czjjnlkf	46	3	structure	structure	NN
cord-018103-czjjnlkf	46	4	is	be	VBZ
cord-018103-czjjnlkf	46	5	usually	usually	RB
cord-018103-czjjnlkf	46	6	a	a	DT
cord-018103-czjjnlkf	46	7	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	46	8	or	or	CC
cord-018103-czjjnlkf	46	9	simple	simple	JJ
cord-018103-czjjnlkf	46	10	stem	stem	NN
cord-018103-czjjnlkf	46	11	-	-	HYPH
cord-018103-czjjnlkf	46	12	loop	loop	NN
cord-018103-czjjnlkf	46	13	,	,	,
cord-018103-czjjnlkf	46	14	as	as	IN
cord-018103-czjjnlkf	46	15	shown	show	VBN
cord-018103-czjjnlkf	46	16	in	in	IN
cord-018103-czjjnlkf	46	17	Fig	Fig	NNP
cord-018103-czjjnlkf	46	18	.	.	.
cord-018103-czjjnlkf	47	1	1	1	LS
cord-018103-czjjnlkf	47	2	.	.	.
cord-018103-czjjnlkf	48	1	For	for	IN
cord-018103-czjjnlkf	48	2	analyzing	analyze	VBG
cord-018103-czjjnlkf	48	3	frameshift	frameshift	NN
cord-018103-czjjnlkf	48	4	sites	site	NNS
cord-018103-czjjnlkf	48	5	in	in	IN
cord-018103-czjjnlkf	48	6	the	the	DT
cord-018103-czjjnlkf	48	7	E.	E.	NNP
cord-018103-czjjnlkf	48	8	coli	coli	NN
cord-018103-czjjnlkf	48	9	genome	genome	NN
cord-018103-czjjnlkf	48	10	sequence	sequence	NN
cord-018103-czjjnlkf	48	11	,	,	,
cord-018103-czjjnlkf	48	12	we	-PRON-	PRP
cord-018103-czjjnlkf	48	13	detected	detect	VBD
cord-018103-czjjnlkf	48	14	heptameric	heptameric	JJ
cord-018103-czjjnlkf	48	15	sequence	sequence	NN
cord-018103-czjjnlkf	48	16	with	with	IN
cord-018103-czjjnlkf	48	17	a	a	DT
cord-018103-czjjnlkf	48	18	secondary	secondary	JJ
cord-018103-czjjnlkf	48	19	structure	structure	NN
cord-018103-czjjnlkf	48	20	.	.	.
cord-018103-czjjnlkf	49	1	In	in	IN
cord-018103-czjjnlkf	49	2	previous	previous	JJ
cord-018103-czjjnlkf	49	3	work	work	NN
cord-018103-czjjnlkf	49	4	by	by	IN
cord-018103-czjjnlkf	49	5	others	other	NNS
cord-018103-czjjnlkf	49	6	[	[	-LRB-
cord-018103-czjjnlkf	49	7	5	5	CD
cord-018103-czjjnlkf	49	8	]	]	-RRB-
cord-018103-czjjnlkf	49	9	[	[	-LRB-
cord-018103-czjjnlkf	49	10	6	6	CD
cord-018103-czjjnlkf	49	11	]	]	-RRB-
cord-018103-czjjnlkf	49	12	[	[	-LRB-
cord-018103-czjjnlkf	49	13	7	7	CD
cord-018103-czjjnlkf	49	14	]	]	-RRB-
cord-018103-czjjnlkf	49	15	,	,	,
cord-018103-czjjnlkf	49	16	frameshift	frameshift	NN
cord-018103-czjjnlkf	49	17	sites	site	NNS
cord-018103-czjjnlkf	49	18	have	have	VBP
cord-018103-czjjnlkf	49	19	two	two	CD
cord-018103-czjjnlkf	49	20	constraints	constraint	NNS
cord-018103-czjjnlkf	49	21	.	.	.
cord-018103-czjjnlkf	50	1	In	in	IN
cord-018103-czjjnlkf	50	2	slippery	slippery	JJ
cord-018103-czjjnlkf	50	3	site	site	NN
cord-018103-czjjnlkf	50	4	X	x	NN
cord-018103-czjjnlkf	50	5	XXY	XXY	NNP
cord-018103-czjjnlkf	50	6	YYZ	YYZ	NNP
cord-018103-czjjnlkf	50	7	,	,	,
cord-018103-czjjnlkf	50	8	X	X	NNP
cord-018103-czjjnlkf	50	9	is	be	VBZ
cord-018103-czjjnlkf	50	10	any	any	DT
cord-018103-czjjnlkf	50	11	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	50	12	,	,	,
cord-018103-czjjnlkf	50	13	Y	Y	NNP
cord-018103-czjjnlkf	50	14	is	be	VBZ
cord-018103-czjjnlkf	50	15	A	a	NN
cord-018103-czjjnlkf	50	16	or	or	CC
cord-018103-czjjnlkf	50	17	U	u	NN
cord-018103-czjjnlkf	50	18	,	,	,
cord-018103-czjjnlkf	50	19	and	and	CC
cord-018103-czjjnlkf	50	20	Z	z	NN
cord-018103-czjjnlkf	50	21	is	be	VBZ
cord-018103-czjjnlkf	50	22	either	either	CC
cord-018103-czjjnlkf	50	23	A	A	NNP
cord-018103-czjjnlkf	50	24	,	,	,
cord-018103-czjjnlkf	50	25	U	U	NNP
cord-018103-czjjnlkf	50	26	or	or	CC
cord-018103-czjjnlkf	50	27	C.	C.	NNP
cord-018103-czjjnlkf	51	1	However	however	RB
cord-018103-czjjnlkf	51	2	,	,	,
cord-018103-czjjnlkf	51	3	in	in	IN
cord-018103-czjjnlkf	51	4	our	-PRON-	PRP$
cord-018103-czjjnlkf	51	5	work	work	NN
cord-018103-czjjnlkf	51	6	,	,	,
cord-018103-czjjnlkf	51	7	any	any	DT
cord-018103-czjjnlkf	51	8	kind	kind	NN
cord-018103-czjjnlkf	51	9	of	of	IN
cord-018103-czjjnlkf	51	10	nucleotide	nucleotide	JJ
cord-018103-czjjnlkf	51	11	with	with	IN
cord-018103-czjjnlkf	51	12	secondary	secondary	JJ
cord-018103-czjjnlkf	51	13	structure	structure	NN
cord-018103-czjjnlkf	51	14	can	can	MD
cord-018103-czjjnlkf	51	15	be	be	VB
cord-018103-czjjnlkf	51	16	located	locate	VBN
cord-018103-czjjnlkf	51	17	in	in	IN
cord-018103-czjjnlkf	51	18	the	the	DT
cord-018103-czjjnlkf	51	19	slippery	slippery	JJ
cord-018103-czjjnlkf	51	20	sequence	sequence	NN
cord-018103-czjjnlkf	51	21	.	.	.
cord-018103-czjjnlkf	52	1	Fig	Fig	NNP
cord-018103-czjjnlkf	52	2	.	.	NNP
cord-018103-czjjnlkf	52	3	2	2	CD
cord-018103-czjjnlkf	52	4	shows	show	VBZ
cord-018103-czjjnlkf	52	5	the	the	DT
cord-018103-czjjnlkf	52	6	parameters	parameter	NNS
cord-018103-czjjnlkf	52	7	for	for	IN
cord-018103-czjjnlkf	52	8	the	the	DT
cord-018103-czjjnlkf	52	9	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	52	10	web	web	NN
cord-018103-czjjnlkf	52	11	service	service	NN
cord-018103-czjjnlkf	52	12	.	.	.
cord-018103-czjjnlkf	53	1	The	the	DT
cord-018103-czjjnlkf	53	2	web	web	NN
cord-018103-czjjnlkf	53	3	service	service	NN
cord-018103-czjjnlkf	53	4	and	and	CC
cord-018103-czjjnlkf	53	5	web	web	NN
cord-018103-czjjnlkf	53	6	application	application	NN
cord-018103-czjjnlkf	53	7	of	of	IN
cord-018103-czjjnlkf	53	8	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	53	9	were	be	VBD
cord-018103-czjjnlkf	53	10	implemented	implement	VBN
cord-018103-czjjnlkf	53	11	using	use	VBG
cord-018103-czjjnlkf	53	12	XML	xml	NN
cord-018103-czjjnlkf	53	13	,	,	,
cord-018103-czjjnlkf	53	14	XSLT	xslt	NN
cord-018103-czjjnlkf	53	15	and	and	CC
cord-018103-czjjnlkf	53	16	JavaScript	JavaScript	NNP
cord-018103-czjjnlkf	53	17	.	.	.
cord-018103-czjjnlkf	54	1	If	if	IN
cord-018103-czjjnlkf	54	2	the	the	DT
cord-018103-czjjnlkf	54	3	user	user	NN
cord-018103-czjjnlkf	54	4	sends	send	VBZ
cord-018103-czjjnlkf	54	5	a	a	DT
cord-018103-czjjnlkf	54	6	query	query	NN
cord-018103-czjjnlkf	54	7	to	to	IN
cord-018103-czjjnlkf	54	8	the	the	DT
cord-018103-czjjnlkf	54	9	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	54	10	server	server	NN
cord-018103-czjjnlkf	54	11	after	after	IN
cord-018103-czjjnlkf	54	12	setting	set	VBG
cord-018103-czjjnlkf	54	13	parameters	parameter	NNS
cord-018103-czjjnlkf	54	14	or	or	CC
cord-018103-czjjnlkf	54	15	defining	define	VBG
cord-018103-czjjnlkf	54	16	a	a	DT
cord-018103-czjjnlkf	54	17	new	new	JJ
cord-018103-czjjnlkf	54	18	model	model	NN
cord-018103-czjjnlkf	54	19	,	,	,
cord-018103-czjjnlkf	54	20	all	all	PDT
cord-018103-czjjnlkf	54	21	the	the	DT
cord-018103-czjjnlkf	54	22	computations	computation	NNS
cord-018103-czjjnlkf	54	23	are	be	VBP
cord-018103-czjjnlkf	54	24	done	do	VBN
cord-018103-czjjnlkf	54	25	on	on	IN
cord-018103-czjjnlkf	54	26	the	the	DT
cord-018103-czjjnlkf	54	27	server	server	NN
cord-018103-czjjnlkf	54	28	side	side	NN
cord-018103-czjjnlkf	54	29	.	.	.
cord-018103-czjjnlkf	55	1	After	after	IN
cord-018103-czjjnlkf	55	2	computation	computation	NN
cord-018103-czjjnlkf	55	3	,	,	,
cord-018103-czjjnlkf	55	4	the	the	DT
cord-018103-czjjnlkf	55	5	server	server	NN
cord-018103-czjjnlkf	55	6	sends	send	VBZ
cord-018103-czjjnlkf	55	7	the	the	DT
cord-018103-czjjnlkf	55	8	results	result	NNS
cord-018103-czjjnlkf	55	9	to	to	IN
cord-018103-czjjnlkf	55	10	the	the	DT
cord-018103-czjjnlkf	55	11	user	user	NN
cord-018103-czjjnlkf	55	12	.	.	.
cord-018103-czjjnlkf	56	1	A	a	DT
cord-018103-czjjnlkf	56	2	programmed	programmed	JJ
cord-018103-czjjnlkf	56	3	-1	-1	NN
cord-018103-czjjnlkf	56	4	ribosomal	ribosomal	JJ
cord-018103-czjjnlkf	56	5	frameshift	frameshift	NN
cord-018103-czjjnlkf	56	6	signal	signal	NN
cord-018103-czjjnlkf	56	7	with	with	IN
cord-018103-czjjnlkf	56	8	H	h	NN
cord-018103-czjjnlkf	56	9	-	-	HYPH
cord-018103-czjjnlkf	56	10	type	type	NN
cord-018103-czjjnlkf	56	11	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	56	12	.	.	.
cord-018103-czjjnlkf	57	1	Stem	stem	NN
cord-018103-czjjnlkf	57	2	1	1	CD
cord-018103-czjjnlkf	57	3	has	have	VBZ
cord-018103-czjjnlkf	57	4	11	11	CD
cord-018103-czjjnlkf	57	5	base	base	NN
cord-018103-czjjnlkf	57	6	pairs	pair	NNS
cord-018103-czjjnlkf	57	7	,	,	,
cord-018103-czjjnlkf	57	8	stem	stem	NN
cord-018103-czjjnlkf	57	9	2	2	CD
cord-018103-czjjnlkf	57	10	has	have	VBZ
cord-018103-czjjnlkf	57	11	6	6	CD
cord-018103-czjjnlkf	57	12	base	base	NN
cord-018103-czjjnlkf	57	13	pairs	pair	NNS
cord-018103-czjjnlkf	57	14	,	,	,
cord-018103-czjjnlkf	57	15	and	and	CC
cord-018103-czjjnlkf	57	16	both	both	DT
cord-018103-czjjnlkf	57	17	loops	loop	NNS
cord-018103-czjjnlkf	57	18	of	of	IN
cord-018103-czjjnlkf	57	19	the	the	DT
cord-018103-czjjnlkf	57	20	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	57	21	have	have	VBP
cord-018103-czjjnlkf	57	22	6	6	CD
cord-018103-czjjnlkf	57	23	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	57	24	.	.	.
cord-018103-czjjnlkf	58	1	In	in	IN
cord-018103-czjjnlkf	58	2	particular	particular	JJ
cord-018103-czjjnlkf	58	3	,	,	,
cord-018103-czjjnlkf	58	4	any	any	DT
cord-018103-czjjnlkf	58	5	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	58	6	can	can	MD
cord-018103-czjjnlkf	58	7	be	be	VB
cord-018103-czjjnlkf	58	8	located	locate	VBN
cord-018103-czjjnlkf	58	9	in	in	IN
cord-018103-czjjnlkf	58	10	the	the	DT
cord-018103-czjjnlkf	58	11	slippery	slippery	JJ
cord-018103-czjjnlkf	58	12	site	site	NN
cord-018103-czjjnlkf	58	13	not	not	RB
cord-018103-czjjnlkf	58	14	the	the	DT
cord-018103-czjjnlkf	58	15	same	same	JJ
cord-018103-czjjnlkf	58	16	as	as	IN
cord-018103-czjjnlkf	58	17	previous	previous	JJ
cord-018103-czjjnlkf	58	18	work	work	NN
cord-018103-czjjnlkf	58	19	.	.	.
cord-018103-czjjnlkf	59	1	The	the	DT
cord-018103-czjjnlkf	59	2	user	user	NN
cord-018103-czjjnlkf	59	3	can	can	MD
cord-018103-czjjnlkf	59	4	define	define	VB
cord-018103-czjjnlkf	59	5	a	a	DT
cord-018103-czjjnlkf	59	6	new	new	JJ
cord-018103-czjjnlkf	59	7	model	model	NN
cord-018103-czjjnlkf	59	8	by	by	IN
cord-018103-czjjnlkf	59	9	specifying	specify	VBG
cord-018103-czjjnlkf	59	10	its	-PRON-	PRP$
cord-018103-czjjnlkf	59	11	components	component	NNS
cord-018103-czjjnlkf	59	12	and	and	CC
cord-018103-czjjnlkf	59	13	their	-PRON-	PRP$
cord-018103-czjjnlkf	59	14	locations	location	NNS
cord-018103-czjjnlkf	59	15	.	.	.
cord-018103-czjjnlkf	60	1	To	to	TO
cord-018103-czjjnlkf	60	2	analyze	analyze	VB
cord-018103-czjjnlkf	60	3	E.	E.	NNP
cord-018103-czjjnlkf	60	4	coli	coli	NNS
cord-018103-czjjnlkf	60	5	genome	genome	NN
cord-018103-czjjnlkf	60	6	,	,	,
cord-018103-czjjnlkf	60	7	we	-PRON-	PRP
cord-018103-czjjnlkf	60	8	set	set	VBD
cord-018103-czjjnlkf	60	9	the	the	DT
cord-018103-czjjnlkf	60	10	selection	selection	NN
cord-018103-czjjnlkf	60	11	option	option	NN
cord-018103-czjjnlkf	60	12	as	as	IN
cord-018103-czjjnlkf	60	13	other	other	JJ
cord-018103-czjjnlkf	60	14	genes	gene	NNS
cord-018103-czjjnlkf	60	15	in	in	IN
cord-018103-czjjnlkf	60	16	bacteria	bacteria	NNS
cord-018103-czjjnlkf	60	17	,	,	,
cord-018103-czjjnlkf	60	18	partial	partial	JJ
cord-018103-czjjnlkf	60	19	sequence	sequence	NN
cord-018103-czjjnlkf	60	20	and	and	CC
cord-018103-czjjnlkf	60	21	+1	+1	NN
cord-018103-czjjnlkf	60	22	strand	strand	NN
cord-018103-czjjnlkf	60	23	.	.	.
cord-018103-czjjnlkf	61	1	Because	because	IN
cord-018103-czjjnlkf	61	2	we	-PRON-	PRP
cord-018103-czjjnlkf	61	3	focused	focus	VBD
cord-018103-czjjnlkf	61	4	on	on	IN
cord-018103-czjjnlkf	61	5	-1	-1	.
cord-018103-czjjnlkf	62	1	frameshift	frameshift	NN
cord-018103-czjjnlkf	62	2	model	model	NN
cord-018103-czjjnlkf	62	3	,	,	,
cord-018103-czjjnlkf	62	4	we	-PRON-	PRP
cord-018103-czjjnlkf	62	5	made	make	VBD
cord-018103-czjjnlkf	62	6	a	a	DT
cord-018103-czjjnlkf	62	7	model	model	NN
cord-018103-czjjnlkf	62	8	which	which	WDT
cord-018103-czjjnlkf	62	9	is	be	VBZ
cord-018103-czjjnlkf	62	10	the	the	DT
cord-018103-czjjnlkf	62	11	general	general	JJ
cord-018103-czjjnlkf	62	12	motif	motif	NN
cord-018103-czjjnlkf	62	13	X	x	NN
cord-018103-czjjnlkf	62	14	XXY	XXY	NNP
cord-018103-czjjnlkf	62	15	YYZ	YYZ	NNP
cord-018103-czjjnlkf	62	16	of	of	IN
cord-018103-czjjnlkf	62	17	the	the	DT
cord-018103-czjjnlkf	62	18	-1	-1	NN
cord-018103-czjjnlkf	62	19	frameshift	frameshift	NN
cord-018103-czjjnlkf	62	20	.	.	.
cord-018103-czjjnlkf	63	1	There	there	EX
cord-018103-czjjnlkf	63	2	was	be	VBD
cord-018103-czjjnlkf	63	3	no	no	DT
cord-018103-czjjnlkf	63	4	limitation	limitation	NN
cord-018103-czjjnlkf	63	5	of	of	IN
cord-018103-czjjnlkf	63	6	frameshift	frameshift	NN
cord-018103-czjjnlkf	63	7	site	site	NN
cord-018103-czjjnlkf	63	8	,	,	,
cord-018103-czjjnlkf	63	9	thus	thus	RB
cord-018103-czjjnlkf	63	10	any	any	DT
cord-018103-czjjnlkf	63	11	kind	kind	NN
cord-018103-czjjnlkf	63	12	of	of	IN
cord-018103-czjjnlkf	63	13	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	63	14	can	can	MD
cord-018103-czjjnlkf	63	15	be	be	VB
cord-018103-czjjnlkf	63	16	located	locate	VBN
cord-018103-czjjnlkf	63	17	in	in	IN
cord-018103-czjjnlkf	63	18	the	the	DT
cord-018103-czjjnlkf	63	19	frameshift	frameshift	NN
cord-018103-czjjnlkf	63	20	site	site	NN
cord-018103-czjjnlkf	63	21	.	.	.
cord-018103-czjjnlkf	64	1	For	for	IN
cord-018103-czjjnlkf	64	2	downstream	downstream	JJ
cord-018103-czjjnlkf	64	3	secondary	secondary	JJ
cord-018103-czjjnlkf	64	4	structure	structure	NN
cord-018103-czjjnlkf	64	5	,	,	,
cord-018103-czjjnlkf	64	6	the	the	DT
cord-018103-czjjnlkf	64	7	length	length	NN
cord-018103-czjjnlkf	64	8	of	of	IN
cord-018103-czjjnlkf	64	9	the	the	DT
cord-018103-czjjnlkf	64	10	stems	stem	NNS
cord-018103-czjjnlkf	64	11	and	and	CC
cord-018103-czjjnlkf	64	12	loops	loop	NNS
cord-018103-czjjnlkf	64	13	set	set	VBN
cord-018103-czjjnlkf	64	14	by	by	IN
cord-018103-czjjnlkf	64	15	default	default	NN
cord-018103-czjjnlkf	64	16	.	.	.
cord-018103-czjjnlkf	65	1	To	to	TO
cord-018103-czjjnlkf	65	2	analyze	analyze	VB
cord-018103-czjjnlkf	65	3	E.	E.	NNP
cord-018103-czjjnlkf	65	4	coli	coli	NNS
cord-018103-czjjnlkf	65	5	genome	genome	NN
cord-018103-czjjnlkf	65	6	,	,	,
cord-018103-czjjnlkf	65	7	we	-PRON-	PRP
cord-018103-czjjnlkf	65	8	set	set	VBD
cord-018103-czjjnlkf	65	9	the	the	DT
cord-018103-czjjnlkf	65	10	selection	selection	NN
cord-018103-czjjnlkf	65	11	option	option	NN
cord-018103-czjjnlkf	65	12	as	as	IN
cord-018103-czjjnlkf	65	13	other	other	JJ
cord-018103-czjjnlkf	65	14	genes	gene	NNS
cord-018103-czjjnlkf	65	15	in	in	IN
cord-018103-czjjnlkf	65	16	bacteria	bacteria	NNS
cord-018103-czjjnlkf	65	17	,	,	,
cord-018103-czjjnlkf	65	18	partial	partial	JJ
cord-018103-czjjnlkf	65	19	sequence	sequence	NN
cord-018103-czjjnlkf	65	20	and	and	CC
cord-018103-czjjnlkf	66	1	+	+	CC
cord-018103-czjjnlkf	66	2	strand	strand	NN
cord-018103-czjjnlkf	66	3	(	(	-LRB-
cord-018103-czjjnlkf	66	4	Fig	Fig	NNP
cord-018103-czjjnlkf	66	5	.	.	.
cord-018103-czjjnlkf	66	6	2A	2a	CD
cord-018103-czjjnlkf	66	7	)	)	-RRB-
cord-018103-czjjnlkf	66	8	.	.	.
cord-018103-czjjnlkf	67	1	Because	because	IN
cord-018103-czjjnlkf	67	2	we	-PRON-	PRP
cord-018103-czjjnlkf	67	3	focused	focus	VBD
cord-018103-czjjnlkf	67	4	on	on	IN
cord-018103-czjjnlkf	67	5	-1	-1	.
cord-018103-czjjnlkf	68	1	frameshift	frameshift	NN
cord-018103-czjjnlkf	68	2	sites	site	NNS
cord-018103-czjjnlkf	68	3	(	(	-LRB-
cord-018103-czjjnlkf	68	4	Fig	Fig	NNP
cord-018103-czjjnlkf	68	5	.	.	.
cord-018103-czjjnlkf	68	6	2B	2b	CD
cord-018103-czjjnlkf	68	7	)	)	-RRB-
cord-018103-czjjnlkf	69	1	,	,	,
cord-018103-czjjnlkf	69	2	we	-PRON-	PRP
cord-018103-czjjnlkf	69	3	defined	define	VBD
cord-018103-czjjnlkf	69	4	a	a	DT
cord-018103-czjjnlkf	69	5	signal	signal	NN
cord-018103-czjjnlkf	69	6	that	that	WDT
cord-018103-czjjnlkf	69	7	fits	fit	VBZ
cord-018103-czjjnlkf	69	8	all	all	DT
cord-018103-czjjnlkf	69	9	kinds	kind	NNS
cord-018103-czjjnlkf	69	10	of	of	IN
cord-018103-czjjnlkf	69	11	motif	motif	NN
cord-018103-czjjnlkf	69	12	X	x	NN
cord-018103-czjjnlkf	69	13	XXY	XXY	NNP
cord-018103-czjjnlkf	69	14	YYZ	YYZ	NNP
cord-018103-czjjnlkf	69	15	of	of	IN
cord-018103-czjjnlkf	69	16	the	the	DT
cord-018103-czjjnlkf	69	17	-1	-1	NN
cord-018103-czjjnlkf	69	18	frameshift	frameshift	NN
cord-018103-czjjnlkf	69	19	.	.	.
cord-018103-czjjnlkf	70	1	There	there	EX
cord-018103-czjjnlkf	70	2	was	be	VBD
cord-018103-czjjnlkf	70	3	no	no	DT
cord-018103-czjjnlkf	70	4	limitation	limitation	NN
cord-018103-czjjnlkf	70	5	of	of	IN
cord-018103-czjjnlkf	70	6	frameshift	frameshift	NN
cord-018103-czjjnlkf	70	7	site	site	NN
cord-018103-czjjnlkf	70	8	,	,	,
cord-018103-czjjnlkf	70	9	thus	thus	RB
cord-018103-czjjnlkf	70	10	any	any	DT
cord-018103-czjjnlkf	70	11	kind	kind	NN
cord-018103-czjjnlkf	70	12	of	of	IN
cord-018103-czjjnlkf	70	13	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	70	14	can	can	MD
cord-018103-czjjnlkf	70	15	be	be	VB
cord-018103-czjjnlkf	70	16	located	locate	VBN
cord-018103-czjjnlkf	70	17	in	in	IN
cord-018103-czjjnlkf	70	18	the	the	DT
cord-018103-czjjnlkf	70	19	frameshift	frameshift	NN
cord-018103-czjjnlkf	70	20	site	site	NN
cord-018103-czjjnlkf	70	21	.	.	.
cord-018103-czjjnlkf	71	1	Thus	thus	RB
cord-018103-czjjnlkf	71	2	we	-PRON-	PRP
cord-018103-czjjnlkf	71	3	set	set	VBP
cord-018103-czjjnlkf	71	4	the	the	DT
cord-018103-czjjnlkf	71	5	match	match	NN
cord-018103-czjjnlkf	71	6	type	type	NN
cord-018103-czjjnlkf	71	7	as	as	IN
cord-018103-czjjnlkf	71	8	NNN	NNN	NNP
cord-018103-czjjnlkf	71	9	(	(	-LRB-
cord-018103-czjjnlkf	71	10	N	N	NNP
cord-018103-czjjnlkf	71	11	is	be	VBZ
cord-018103-czjjnlkf	71	12	any	any	DT
cord-018103-czjjnlkf	71	13	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	71	14	)	)	-RRB-
cord-018103-czjjnlkf	71	15	and	and	CC
cord-018103-czjjnlkf	71	16	no	no	DT
cord-018103-czjjnlkf	71	17	exception	exception	NN
cord-018103-czjjnlkf	71	18	of	of	IN
cord-018103-czjjnlkf	71	19	arrangement	arrangement	NN
cord-018103-czjjnlkf	71	20	.	.	.
cord-018103-czjjnlkf	72	1	That	that	RB
cord-018103-czjjnlkf	72	2	is	is	RB
cord-018103-czjjnlkf	72	3	,	,	,
cord-018103-czjjnlkf	72	4	frameshift	frameshift	NN
cord-018103-czjjnlkf	72	5	site	site	NN
cord-018103-czjjnlkf	72	6	can	can	MD
cord-018103-czjjnlkf	72	7	occur	occur	VB
cord-018103-czjjnlkf	72	8	even	even	RB
cord-018103-czjjnlkf	72	9	at	at	IN
cord-018103-czjjnlkf	72	10	A	a	DT
cord-018103-czjjnlkf	72	11	AAA	AAA	NNP
cord-018103-czjjnlkf	72	12	AAA	aaa	NN
cord-018103-czjjnlkf	72	13	or	or	CC
cord-018103-czjjnlkf	72	14	U	U	NNP
cord-018103-czjjnlkf	72	15	UUU	UUU	NNP
cord-018103-czjjnlkf	72	16	UUU	UUU	NNP
cord-018103-czjjnlkf	72	17	.	.	.
cord-018103-czjjnlkf	73	1	Default	default	NN
cord-018103-czjjnlkf	73	2	values	value	NNS
cord-018103-czjjnlkf	73	3	were	be	VBD
cord-018103-czjjnlkf	73	4	used	use	VBN
cord-018103-czjjnlkf	73	5	for	for	IN
cord-018103-czjjnlkf	73	6	the	the	DT
cord-018103-czjjnlkf	73	7	lengths	length	NNS
cord-018103-czjjnlkf	73	8	of	of	IN
cord-018103-czjjnlkf	73	9	the	the	DT
cord-018103-czjjnlkf	73	10	stems	stem	NNS
cord-018103-czjjnlkf	73	11	and	and	CC
cord-018103-czjjnlkf	73	12	loops	loop	NNS
cord-018103-czjjnlkf	73	13	in	in	IN
cord-018103-czjjnlkf	73	14	the	the	DT
cord-018103-czjjnlkf	73	15	downstream	downstream	JJ
cord-018103-czjjnlkf	73	16	secondary	secondary	JJ
cord-018103-czjjnlkf	73	17	structure	structure	NN
cord-018103-czjjnlkf	73	18	(	(	-LRB-
cord-018103-czjjnlkf	73	19	Fig	Fig	NNP
cord-018103-czjjnlkf	73	20	.	.	.
cord-018103-czjjnlkf	73	21	2C	2C	NNP
cord-018103-czjjnlkf	73	22	)	)	-RRB-
cord-018103-czjjnlkf	73	23	.	.	.
cord-018103-czjjnlkf	74	1	Fig	Fig	NNP
cord-018103-czjjnlkf	74	2	.	.	.
cord-018103-czjjnlkf	75	1	3	3	CD
cord-018103-czjjnlkf	75	2	shows	show	VBZ
cord-018103-czjjnlkf	75	3	the	the	DT
cord-018103-czjjnlkf	75	4	XML	xml	NN
cord-018103-czjjnlkf	75	5	schema	schema	NN
cord-018103-czjjnlkf	75	6	for	for	IN
cord-018103-czjjnlkf	75	7	the	the	DT
cord-018103-czjjnlkf	75	8	parameters	parameter	NNS
cord-018103-czjjnlkf	75	9	of	of	IN
cord-018103-czjjnlkf	75	10	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	75	11	.	.	.
cord-018103-czjjnlkf	76	1	When	when	WRB
cord-018103-czjjnlkf	76	2	the	the	DT
cord-018103-czjjnlkf	76	3	user	user	NN
cord-018103-czjjnlkf	76	4	sets	set	VBZ
cord-018103-czjjnlkf	76	5	the	the	DT
cord-018103-czjjnlkf	76	6	parameters	parameter	NNS
cord-018103-czjjnlkf	76	7	of	of	IN
cord-018103-czjjnlkf	76	8	a	a	DT
cord-018103-czjjnlkf	76	9	model	model	NN
cord-018103-czjjnlkf	76	10	in	in	IN
cord-018103-czjjnlkf	76	11	the	the	DT
cord-018103-czjjnlkf	76	12	web	web	NN
cord-018103-czjjnlkf	76	13	page	page	NN
cord-018103-czjjnlkf	76	14	of	of	IN
cord-018103-czjjnlkf	76	15	the	the	DT
cord-018103-czjjnlkf	76	16	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	76	17	web	web	NN
cord-018103-czjjnlkf	76	18	service	service	NN
cord-018103-czjjnlkf	76	19	,	,	,
cord-018103-czjjnlkf	76	20	the	the	DT
cord-018103-czjjnlkf	76	21	parameters	parameter	NNS
cord-018103-czjjnlkf	76	22	are	be	VBP
cord-018103-czjjnlkf	76	23	converted	convert	VBN
cord-018103-czjjnlkf	76	24	to	to	IN
cord-018103-czjjnlkf	76	25	XML	XML	NNP
cord-018103-czjjnlkf	76	26	.	.	.
cord-018103-czjjnlkf	77	1	After	after	IN
cord-018103-czjjnlkf	77	2	the	the	DT
cord-018103-czjjnlkf	77	3	request	request	NN
cord-018103-czjjnlkf	77	4	of	of	IN
cord-018103-czjjnlkf	77	5	a	a	DT
cord-018103-czjjnlkf	77	6	web	web	NN
cord-018103-czjjnlkf	77	7	service	service	NN
cord-018103-czjjnlkf	77	8	is	be	VBZ
cord-018103-czjjnlkf	77	9	sent	send	VBN
cord-018103-czjjnlkf	77	10	to	to	IN
cord-018103-czjjnlkf	77	11	the	the	DT
cord-018103-czjjnlkf	77	12	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	77	13	server	server	NN
cord-018103-czjjnlkf	77	14	,	,	,
cord-018103-czjjnlkf	77	15	all	all	PDT
cord-018103-czjjnlkf	77	16	the	the	DT
cord-018103-czjjnlkf	77	17	computations	computation	NNS
cord-018103-czjjnlkf	77	18	are	be	VBP
cord-018103-czjjnlkf	77	19	done	do	VBN
cord-018103-czjjnlkf	77	20	on	on	IN
cord-018103-czjjnlkf	77	21	the	the	DT
cord-018103-czjjnlkf	77	22	server	server	NN
cord-018103-czjjnlkf	77	23	side	side	NN
cord-018103-czjjnlkf	77	24	.	.	.
cord-018103-czjjnlkf	78	1	Fig	Fig	NNP
cord-018103-czjjnlkf	78	2	.	.	.
cord-018103-czjjnlkf	79	1	4	4	LS
cord-018103-czjjnlkf	79	2	shows	show	VBZ
cord-018103-czjjnlkf	79	3	the	the	DT
cord-018103-czjjnlkf	79	4	frameshift	frameshift	NN
cord-018103-czjjnlkf	79	5	site	site	NN
cord-018103-czjjnlkf	79	6	of	of	IN
cord-018103-czjjnlkf	79	7	the	the	DT
cord-018103-czjjnlkf	79	8	genome	genome	NN
cord-018103-czjjnlkf	79	9	of	of	IN
cord-018103-czjjnlkf	79	10	SARS	SARS	NNP
cord-018103-czjjnlkf	79	11	corona	corona	NNP
cord-018103-czjjnlkf	79	12	virus	virus	NN
cord-018103-czjjnlkf	79	13	(	(	-LRB-
cord-018103-czjjnlkf	79	14	NC_004718	nc_004718	NN
cord-018103-czjjnlkf	79	15	)	)	-RRB-
cord-018103-czjjnlkf	79	16	.	.	.
cord-018103-czjjnlkf	80	1	ORF1a	ORF1a	NNP
cord-018103-czjjnlkf	80	2	(	(	-LRB-
cord-018103-czjjnlkf	80	3	265	265	CD
cord-018103-czjjnlkf	80	4	..	..	CD
cord-018103-czjjnlkf	80	5	13398	13398	CD
cord-018103-czjjnlkf	80	6	)	)	-RRB-
cord-018103-czjjnlkf	81	1	and	and	CC
cord-018103-czjjnlkf	81	2	ORF1b	ORF1b	NNP
cord-018103-czjjnlkf	81	3	(	(	-LRB-
cord-018103-czjjnlkf	81	4	13398	13398	CD
cord-018103-czjjnlkf	81	5	..	..	.
cord-018103-czjjnlkf	82	1	21485	21485	CD
cord-018103-czjjnlkf	82	2	)	)	-RRB-
cord-018103-czjjnlkf	82	3	partially	partially	RB
cord-018103-czjjnlkf	82	4	overlap	overlap	VBP
cord-018103-czjjnlkf	82	5	each	each	DT
cord-018103-czjjnlkf	82	6	other	other	JJ
cord-018103-czjjnlkf	82	7	.	.	.
cord-018103-czjjnlkf	83	1	U	U	NNP
cord-018103-czjjnlkf	83	2	UUA	UUA	NNP
cord-018103-czjjnlkf	83	3	AAC	AAC	NNP
cord-018103-czjjnlkf	83	4	is	be	VBZ
cord-018103-czjjnlkf	83	5	the	the	DT
cord-018103-czjjnlkf	83	6	slippery	slippery	JJ
cord-018103-czjjnlkf	83	7	sequence	sequence	NN
cord-018103-czjjnlkf	83	8	and	and	CC
cord-018103-czjjnlkf	83	9	the	the	DT
cord-018103-czjjnlkf	83	10	secondary	secondary	JJ
cord-018103-czjjnlkf	83	11	structure	structure	NN
cord-018103-czjjnlkf	83	12	is	be	VBZ
cord-018103-czjjnlkf	83	13	a	a	DT
cord-018103-czjjnlkf	83	14	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	83	15	[	[	-LRB-
cord-018103-czjjnlkf	83	16	8	8	CD
cord-018103-czjjnlkf	83	17	]	]	-RRB-
cord-018103-czjjnlkf	83	18	.	.	.
cord-018103-czjjnlkf	84	1	In	in	IN
cord-018103-czjjnlkf	84	2	the	the	DT
cord-018103-czjjnlkf	84	3	GenBank	GenBank	NNP
cord-018103-czjjnlkf	84	4	description	description	NN
cord-018103-czjjnlkf	84	5	,	,	,
cord-018103-czjjnlkf	84	6	the	the	DT
cord-018103-czjjnlkf	84	7	overlapping	overlap	VBG
cord-018103-czjjnlkf	84	8	region	region	NN
cord-018103-czjjnlkf	84	9	of	of	IN
cord-018103-czjjnlkf	84	10	ORF1a	ORF1a	NNP
cord-018103-czjjnlkf	84	11	and	and	CC
cord-018103-czjjnlkf	84	12	ORF1b	ORF1b	NNP
cord-018103-czjjnlkf	84	13	has	have	VBZ
cord-018103-czjjnlkf	84	14	only	only	RB
cord-018103-czjjnlkf	84	15	one	one	CD
cord-018103-czjjnlkf	84	16	1	1	CD
cord-018103-czjjnlkf	84	17	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	84	18	.	.	.
cord-018103-czjjnlkf	85	1	ORF1b	ORF1b	NNP
cord-018103-czjjnlkf	85	2	starts	start	VBZ
cord-018103-czjjnlkf	85	3	from	from	IN
cord-018103-czjjnlkf	85	4	codon	codon	NN
cord-018103-czjjnlkf	85	5	AAA	AAA	NNP
cord-018103-czjjnlkf	85	6	instead	instead	RB
cord-018103-czjjnlkf	85	7	of	of	IN
cord-018103-czjjnlkf	85	8	a	a	DT
cord-018103-czjjnlkf	85	9	regular	regular	JJ
cord-018103-czjjnlkf	85	10	start	start	NN
cord-018103-czjjnlkf	85	11	codon	codon	NN
cord-018103-czjjnlkf	85	12	.	.	.
cord-018103-czjjnlkf	86	1	The	the	DT
cord-018103-czjjnlkf	86	2	start	start	NN
cord-018103-czjjnlkf	86	3	codon	codon	NN
cord-018103-czjjnlkf	86	4	of	of	IN
cord-018103-czjjnlkf	86	5	ORF2	ORF2	NNP
cord-018103-czjjnlkf	86	6	(	(	-LRB-
cord-018103-czjjnlkf	86	7	red	red	JJ
cord-018103-czjjnlkf	86	8	triangle	triangle	NN
cord-018103-czjjnlkf	86	9	)	)	-RRB-
cord-018103-czjjnlkf	86	10	exists	exist	VBZ
cord-018103-czjjnlkf	86	11	outside	outside	IN
cord-018103-czjjnlkf	86	12	the	the	DT
cord-018103-czjjnlkf	86	13	overlapping	overlap	VBG
cord-018103-czjjnlkf	86	14	region	region	NN
cord-018103-czjjnlkf	86	15	.	.	.
cord-018103-czjjnlkf	87	1	Frameshifting	Frameshifting	NNP
cord-018103-czjjnlkf	87	2	can	can	MD
cord-018103-czjjnlkf	87	3	occur	occur	VB
cord-018103-czjjnlkf	87	4	even	even	RB
cord-018103-czjjnlkf	87	5	in	in	IN
cord-018103-czjjnlkf	87	6	overlapping	overlap	VBG
cord-018103-czjjnlkf	87	7	regions	region	NNS
cord-018103-czjjnlkf	87	8	with	with	IN
cord-018103-czjjnlkf	87	9	1	1	CD
cord-018103-czjjnlkf	87	10	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	87	11	.	.	.
cord-018103-czjjnlkf	88	1	To	to	TO
cord-018103-czjjnlkf	88	2	solve	solve	VB
cord-018103-czjjnlkf	88	3	these	these	DT
cord-018103-czjjnlkf	88	4	problems	problem	NNS
cord-018103-czjjnlkf	88	5	,	,	,
cord-018103-czjjnlkf	88	6	finding	find	VBG
cord-018103-czjjnlkf	88	7	an	an	DT
cord-018103-czjjnlkf	88	8	overlapping	overlap	VBG
cord-018103-czjjnlkf	88	9	region	region	NN
cord-018103-czjjnlkf	88	10	is	be	VBZ
cord-018103-czjjnlkf	88	11	divided	divide	VBN
cord-018103-czjjnlkf	88	12	into	into	IN
cord-018103-czjjnlkf	88	13	two	two	CD
cord-018103-czjjnlkf	88	14	processes	process	NNS
cord-018103-czjjnlkf	88	15	:	:	:
cord-018103-czjjnlkf	88	16	finding	find	VBG
cord-018103-czjjnlkf	88	17	motifs	motif	NNS
cord-018103-czjjnlkf	88	18	and	and	CC
cord-018103-czjjnlkf	88	19	finding	find	VBG
cord-018103-czjjnlkf	88	20	overlapping	overlap	VBG
cord-018103-czjjnlkf	88	21	regions	region	NNS
cord-018103-czjjnlkf	88	22	.	.	.
cord-018103-czjjnlkf	89	1	The	the	DT
cord-018103-czjjnlkf	89	2	shape	shape	NN
cord-018103-czjjnlkf	89	3	of	of	IN
cord-018103-czjjnlkf	89	4	an	an	DT
cord-018103-czjjnlkf	89	5	overlapping	overlap	VBG
cord-018103-czjjnlkf	89	6	region	region	NN
cord-018103-czjjnlkf	89	7	is	be	VBZ
cord-018103-czjjnlkf	89	8	considered	consider	VBN
cord-018103-czjjnlkf	89	9	to	to	TO
cord-018103-czjjnlkf	89	10	find	find	VB
cord-018103-czjjnlkf	89	11	an	an	DT
cord-018103-czjjnlkf	89	12	overlapping	overlap	VBG
cord-018103-czjjnlkf	89	13	region	region	NN
cord-018103-czjjnlkf	89	14	.	.	.
cord-018103-czjjnlkf	90	1	As	as	IN
cord-018103-czjjnlkf	90	2	shown	show	VBN
cord-018103-czjjnlkf	90	3	in	in	IN
cord-018103-czjjnlkf	90	4	Fig	Fig	NNP
cord-018103-czjjnlkf	90	5	.	.	.
cord-018103-czjjnlkf	91	1	5	5	LS
cord-018103-czjjnlkf	91	2	,	,	,
cord-018103-czjjnlkf	91	3	the	the	DT
cord-018103-czjjnlkf	91	4	overlapping	overlap	VBG
cord-018103-czjjnlkf	91	5	region	region	NN
cord-018103-czjjnlkf	91	6	is	be	VBZ
cord-018103-czjjnlkf	91	7	extended	extend	VBN
cord-018103-czjjnlkf	91	8	from	from	IN
cord-018103-czjjnlkf	91	9	stop	stop	NN
cord-018103-czjjnlkf	91	10	codon	codon	NN
cord-018103-czjjnlkf	91	11	1	1	CD
cord-018103-czjjnlkf	91	12	of	of	IN
cord-018103-czjjnlkf	91	13	open	open	JJ
cord-018103-czjjnlkf	91	14	reading	reading	NN
cord-018103-czjjnlkf	91	15	frame	frame	NN
cord-018103-czjjnlkf	91	16	2	2	CD
cord-018103-czjjnlkf	91	17	to	to	TO
cord-018103-czjjnlkf	91	18	stop	stop	VB
cord-018103-czjjnlkf	91	19	codon	codon	NN
cord-018103-czjjnlkf	91	20	2	2	CD
cord-018103-czjjnlkf	91	21	of	of	IN
cord-018103-czjjnlkf	91	22	open	open	JJ
cord-018103-czjjnlkf	91	23	reading	reading	NN
cord-018103-czjjnlkf	91	24	frame	frame	NN
cord-018103-czjjnlkf	91	25	1	1	CD
cord-018103-czjjnlkf	91	26	(	(	-LRB-
cord-018103-czjjnlkf	91	27	green	green	JJ
cord-018103-czjjnlkf	91	28	color	color	NN
cord-018103-czjjnlkf	91	29	)	)	-RRB-
cord-018103-czjjnlkf	91	30	.	.	.
cord-018103-czjjnlkf	92	1	The	the	DT
cord-018103-czjjnlkf	92	2	minimum	minimum	JJ
cord-018103-czjjnlkf	92	3	length	length	NN
cord-018103-czjjnlkf	92	4	of	of	IN
cord-018103-czjjnlkf	92	5	both	both	DT
cord-018103-czjjnlkf	92	6	genes	gene	NNS
cord-018103-czjjnlkf	92	7	should	should	MD
cord-018103-czjjnlkf	92	8	be	be	VB
cord-018103-czjjnlkf	92	9	longer	long	JJR
cord-018103-czjjnlkf	92	10	than	than	IN
cord-018103-czjjnlkf	92	11	100	100	CD
cord-018103-czjjnlkf	92	12	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	92	13	,	,	,
cord-018103-czjjnlkf	92	14	and	and	CC
cord-018103-czjjnlkf	92	15	the	the	DT
cord-018103-czjjnlkf	92	16	length	length	NN
cord-018103-czjjnlkf	92	17	of	of	IN
cord-018103-czjjnlkf	92	18	the	the	DT
cord-018103-czjjnlkf	92	19	overlapping	overlap	VBG
cord-018103-czjjnlkf	92	20	region	region	NN
cord-018103-czjjnlkf	92	21	should	should	MD
cord-018103-czjjnlkf	92	22	be	be	VB
cord-018103-czjjnlkf	92	23	longer	long	JJR
cord-018103-czjjnlkf	92	24	than	than	IN
cord-018103-czjjnlkf	92	25	30	30	CD
cord-018103-czjjnlkf	92	26	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	92	27	.	.	.
cord-018103-czjjnlkf	93	1	In	in	IN
cord-018103-czjjnlkf	93	2	addition	addition	NN
cord-018103-czjjnlkf	93	3	,	,	,
cord-018103-czjjnlkf	93	4	the	the	DT
cord-018103-czjjnlkf	93	5	location	location	NN
cord-018103-czjjnlkf	93	6	of	of	IN
cord-018103-czjjnlkf	93	7	the	the	DT
cord-018103-czjjnlkf	93	8	start	start	NN
cord-018103-czjjnlkf	93	9	codon	codon	NN
cord-018103-czjjnlkf	93	10	of	of	IN
cord-018103-czjjnlkf	93	11	ORF2	ORF2	NNP
cord-018103-czjjnlkf	93	12	does	do	VBZ
cord-018103-czjjnlkf	93	13	not	not	RB
cord-018103-czjjnlkf	93	14	matter	matter	VB
cord-018103-czjjnlkf	93	15	.	.	.
cord-018103-czjjnlkf	94	1	As	as	IN
cord-018103-czjjnlkf	94	2	in	in	IN
cord-018103-czjjnlkf	94	3	the	the	DT
cord-018103-czjjnlkf	94	4	SARS	SARS	NNP
cord-018103-czjjnlkf	94	5	corona	corona	NNP
cord-018103-czjjnlkf	94	6	virus	virus	NN
cord-018103-czjjnlkf	94	7	,	,	,
cord-018103-czjjnlkf	94	8	the	the	DT
cord-018103-czjjnlkf	94	9	start	start	NN
cord-018103-czjjnlkf	94	10	codon	codon	NN
cord-018103-czjjnlkf	94	11	is	be	VBZ
cord-018103-czjjnlkf	94	12	not	not	RB
cord-018103-czjjnlkf	94	13	always	always	RB
cord-018103-czjjnlkf	94	14	located	locate	VBN
cord-018103-czjjnlkf	94	15	in	in	IN
cord-018103-czjjnlkf	94	16	the	the	DT
cord-018103-czjjnlkf	94	17	overlapping	overlap	VBG
cord-018103-czjjnlkf	94	18	region	region	NN
cord-018103-czjjnlkf	94	19	of	of	IN
cord-018103-czjjnlkf	94	20	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	94	21	genes	gene	NNS
cord-018103-czjjnlkf	94	22	.	.	.
cord-018103-czjjnlkf	94	23	 	 	_SP
cord-018103-czjjnlkf	95	1	Additional	additional	JJ
cord-018103-czjjnlkf	95	2	method	method	NN
cord-018103-czjjnlkf	95	3	to	to	TO
cord-018103-czjjnlkf	95	4	find	find	VB
cord-018103-czjjnlkf	95	5	overlapping	overlapping	JJ
cord-018103-czjjnlkf	95	6	regions	region	NNS
cord-018103-czjjnlkf	95	7	is	be	VBZ
cord-018103-czjjnlkf	95	8	to	to	TO
cord-018103-czjjnlkf	95	9	use	use	VB
cord-018103-czjjnlkf	95	10	the	the	DT
cord-018103-czjjnlkf	95	11	description	description	NN
cord-018103-czjjnlkf	95	12	of	of	IN
cord-018103-czjjnlkf	95	13	the	the	DT
cord-018103-czjjnlkf	95	14	Gen	Gen	NNP
cord-018103-czjjnlkf	95	15	-	-	HYPH
cord-018103-czjjnlkf	95	16	Bank	Bank	NNP
cord-018103-czjjnlkf	95	17	file	file	NN
cord-018103-czjjnlkf	95	18	.	.	.
cord-018103-czjjnlkf	96	1	If	if	IN
cord-018103-czjjnlkf	96	2	more	more	JJR
cord-018103-czjjnlkf	96	3	than	than	IN
cord-018103-czjjnlkf	96	4	1	1	CD
cord-018103-czjjnlkf	96	5	nucleotide	nucleotide	NN
cord-018103-czjjnlkf	96	6	is	be	VBZ
cord-018103-czjjnlkf	96	7	overlapped	overlap	VBN
cord-018103-czjjnlkf	96	8	,	,	,
cord-018103-czjjnlkf	96	9	we	-PRON-	PRP
cord-018103-czjjnlkf	96	10	consider	consider	VBP
cord-018103-czjjnlkf	96	11	two	two	CD
cord-018103-czjjnlkf	96	12	open	open	JJ
cord-018103-czjjnlkf	96	13	reading	reading	NN
cord-018103-czjjnlkf	96	14	frames	frame	NNS
cord-018103-czjjnlkf	96	15	as	as	IN
cord-018103-czjjnlkf	96	16	a	a	DT
cord-018103-czjjnlkf	96	17	candidate	candidate	NN
cord-018103-czjjnlkf	96	18	of	of	IN
cord-018103-czjjnlkf	96	19	partially	partially	RB
cord-018103-czjjnlkf	96	20	overlapping	overlap	VBG
cord-018103-czjjnlkf	96	21	genes	gene	NNS
cord-018103-czjjnlkf	96	22	.	.	.
cord-018103-czjjnlkf	97	1	Finally	finally	RB
cord-018103-czjjnlkf	97	2	,	,	,
cord-018103-czjjnlkf	97	3	the	the	DT
cord-018103-czjjnlkf	97	4	overlapping	overlap	VBG
cord-018103-czjjnlkf	97	5	regions	region	NNS
cord-018103-czjjnlkf	97	6	found	find	VBD
cord-018103-czjjnlkf	97	7	both	both	CC
cord-018103-czjjnlkf	97	8	by	by	IN
cord-018103-czjjnlkf	97	9	FSFinder	FSFinder	NNS
cord-018103-czjjnlkf	97	10	and	and	CC
cord-018103-czjjnlkf	97	11	by	by	IN
cord-018103-czjjnlkf	97	12	the	the	DT
cord-018103-czjjnlkf	97	13	GenBank	GenBank	NNP
cord-018103-czjjnlkf	97	14	description	description	NN
cord-018103-czjjnlkf	97	15	are	be	VBP
cord-018103-czjjnlkf	97	16	used	use	VBN
cord-018103-czjjnlkf	97	17	for	for	IN
cord-018103-czjjnlkf	97	18	further	further	JJ
cord-018103-czjjnlkf	97	19	analysis	analysis	NN
cord-018103-czjjnlkf	97	20	.	.	.
cord-018103-czjjnlkf	97	21	 	 	_SP
cord-018103-czjjnlkf	98	1	The	the	DT
cord-018103-czjjnlkf	98	2	E.	E.	NNP
cord-018103-czjjnlkf	98	3	coli	coli	VBZ
cord-018103-czjjnlkf	98	4	K12	K12	NNP
cord-018103-czjjnlkf	98	5	genome	genome	NN
cord-018103-czjjnlkf	98	6	sequence	sequence	NN
cord-018103-czjjnlkf	98	7	(	(	-LRB-
cord-018103-czjjnlkf	98	8	NC_000913	NC_000913	NNP
cord-018103-czjjnlkf	98	9	)	)	-RRB-
cord-018103-czjjnlkf	98	10	was	be	VBD
cord-018103-czjjnlkf	98	11	obtained	obtain	VBN
cord-018103-czjjnlkf	98	12	from	from	IN
cord-018103-czjjnlkf	98	13	GenBank	GenBank	NNP
cord-018103-czjjnlkf	98	14	.	.	.
cord-018103-czjjnlkf	99	1	As	as	IN
cord-018103-czjjnlkf	99	2	shown	show	VBN
cord-018103-czjjnlkf	99	3	in	in	IN
cord-018103-czjjnlkf	99	4	Fig	Fig	NNP
cord-018103-czjjnlkf	99	5	.	.	.
cord-018103-czjjnlkf	100	1	6	6	CD
cord-018103-czjjnlkf	100	2	,	,	,
cord-018103-czjjnlkf	100	3	all	all	PDT
cord-018103-czjjnlkf	100	4	the	the	DT
cord-018103-czjjnlkf	100	5	heptameric	heptameric	JJ
cord-018103-czjjnlkf	100	6	sequences	sequence	NNS
cord-018103-czjjnlkf	100	7	that	that	WDT
cord-018103-czjjnlkf	100	8	follow	follow	VBP
cord-018103-czjjnlkf	100	9	X	X	NNP
cord-018103-czjjnlkf	100	10	XXY	XXY	NNP
cord-018103-czjjnlkf	100	11	YYZ	YYZ	NNP
cord-018103-czjjnlkf	100	12	motif	motif	NN
cord-018103-czjjnlkf	100	13	were	be	VBD
cord-018103-czjjnlkf	100	14	Fig	Fig	NNP
cord-018103-czjjnlkf	100	15	.	.	.
cord-018103-czjjnlkf	100	16	6	6	CD
cord-018103-czjjnlkf	100	17	.	.	.
cord-018103-czjjnlkf	101	1	The	the	DT
cord-018103-czjjnlkf	101	2	prediction	prediction	NN
cord-018103-czjjnlkf	101	3	process	process	NN
cord-018103-czjjnlkf	101	4	of	of	IN
cord-018103-czjjnlkf	101	5	frameshift	frameshift	NN
cord-018103-czjjnlkf	101	6	sites	site	NNS
cord-018103-czjjnlkf	101	7	from	from	IN
cord-018103-czjjnlkf	101	8	the	the	DT
cord-018103-czjjnlkf	101	9	Escherichia	Escherichia	NNP
cord-018103-czjjnlkf	101	10	coli	coli	NNS
cord-018103-czjjnlkf	101	11	K	K	NNP
cord-018103-czjjnlkf	101	12	12	12	CD
cord-018103-czjjnlkf	101	13	genome	genome	NN
cord-018103-czjjnlkf	101	14	sequence	sequence	NN
cord-018103-czjjnlkf	101	15	examined	examine	VBN
cord-018103-czjjnlkf	101	16	.	.	.
cord-018103-czjjnlkf	102	1	As	as	IN
cord-018103-czjjnlkf	102	2	a	a	DT
cord-018103-czjjnlkf	102	3	result	result	NN
cord-018103-czjjnlkf	102	4	of	of	IN
cord-018103-czjjnlkf	102	5	this	this	DT
cord-018103-czjjnlkf	102	6	process	process	NN
cord-018103-czjjnlkf	102	7	18,401	18,401	CD
cord-018103-czjjnlkf	102	8	sites	site	NNS
cord-018103-czjjnlkf	102	9	were	be	VBD
cord-018103-czjjnlkf	102	10	found	find	VBN
cord-018103-czjjnlkf	102	11	.	.	.
cord-018103-czjjnlkf	103	1	Whether	whether	IN
cord-018103-czjjnlkf	103	2	these	these	DT
cord-018103-czjjnlkf	103	3	sites	site	NNS
cord-018103-czjjnlkf	103	4	are	be	VBP
cord-018103-czjjnlkf	103	5	located	locate	VBN
cord-018103-czjjnlkf	103	6	in	in	IN
cord-018103-czjjnlkf	103	7	the	the	DT
cord-018103-czjjnlkf	103	8	overlapping	overlap	VBG
cord-018103-czjjnlkf	103	9	region	region	NN
cord-018103-czjjnlkf	103	10	or	or	CC
cord-018103-czjjnlkf	103	11	not	not	RB
cord-018103-czjjnlkf	103	12	was	be	VBD
cord-018103-czjjnlkf	103	13	not	not	RB
cord-018103-czjjnlkf	103	14	considered	consider	VBN
cord-018103-czjjnlkf	103	15	when	when	WRB
cord-018103-czjjnlkf	103	16	finding	find	VBG
cord-018103-czjjnlkf	103	17	these	these	DT
cord-018103-czjjnlkf	103	18	sites	site	NNS
cord-018103-czjjnlkf	103	19	.	.	.
cord-018103-czjjnlkf	104	1	For	for	IN
cord-018103-czjjnlkf	104	2	overlapping	overlap	VBG
cord-018103-czjjnlkf	104	3	regions	region	NNS
cord-018103-czjjnlkf	104	4	of	of	IN
cord-018103-czjjnlkf	104	5	ORFs	ORFs	NNP
cord-018103-czjjnlkf	104	6	,	,	,
cord-018103-czjjnlkf	104	7	we	-PRON-	PRP
cord-018103-czjjnlkf	104	8	found	find	VBD
cord-018103-czjjnlkf	104	9	312	312	CD
cord-018103-czjjnlkf	104	10	candidate	candidate	NN
cord-018103-czjjnlkf	104	11	regions	region	NNS
cord-018103-czjjnlkf	104	12	that	that	WDT
cord-018103-czjjnlkf	104	13	were	be	VBD
cord-018103-czjjnlkf	104	14	partially	partially	RB
cord-018103-czjjnlkf	104	15	overlapped	overlap	VBN
cord-018103-czjjnlkf	104	16	more	more	JJR
cord-018103-czjjnlkf	104	17	than	than	IN
cord-018103-czjjnlkf	104	18	1	1	CD
cord-018103-czjjnlkf	104	19	base	base	NN
cord-018103-czjjnlkf	104	20	according	accord	VBG
cord-018103-czjjnlkf	104	21	to	to	IN
cord-018103-czjjnlkf	104	22	the	the	DT
cord-018103-czjjnlkf	104	23	GenBank	GenBank	NNP
cord-018103-czjjnlkf	104	24	description	description	NN
cord-018103-czjjnlkf	104	25	and	and	CC
cord-018103-czjjnlkf	104	26	309	309	CD
cord-018103-czjjnlkf	104	27	candidate	candidate	NN
cord-018103-czjjnlkf	104	28	regions	region	NNS
cord-018103-czjjnlkf	104	29	that	that	WDT
cord-018103-czjjnlkf	104	30	were	be	VBD
cord-018103-czjjnlkf	104	31	overlapped	overlap	VBN
cord-018103-czjjnlkf	104	32	more	more	JJR
cord-018103-czjjnlkf	104	33	than	than	IN
cord-018103-czjjnlkf	104	34	30	30	CD
cord-018103-czjjnlkf	104	35	bases	basis	NNS
cord-018103-czjjnlkf	104	36	using	use	VBG
cord-018103-czjjnlkf	104	37	the	the	DT
cord-018103-czjjnlkf	104	38	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	104	39	web	web	NN
cord-018103-czjjnlkf	104	40	service	service	NN
cord-018103-czjjnlkf	104	41	.	.	.
cord-018103-czjjnlkf	105	1	After	after	IN
cord-018103-czjjnlkf	105	2	removing	remove	VBG
cord-018103-czjjnlkf	105	3	redundant	redundant	JJ
cord-018103-czjjnlkf	105	4	sites	site	NNS
cord-018103-czjjnlkf	105	5	,	,	,
cord-018103-czjjnlkf	105	6	we	-PRON-	PRP
cord-018103-czjjnlkf	105	7	obtained	obtain	VBD
cord-018103-czjjnlkf	105	8	195	195	CD
cord-018103-czjjnlkf	105	9	overlapping	overlap	VBG
cord-018103-czjjnlkf	105	10	regions	region	NNS
cord-018103-czjjnlkf	105	11	.	.	.
cord-018103-czjjnlkf	106	1	From	from	IN
cord-018103-czjjnlkf	106	2	these	these	DT
cord-018103-czjjnlkf	106	3	regions	region	NNS
cord-018103-czjjnlkf	106	4	,	,	,
cord-018103-czjjnlkf	106	5	heptameric	heptameric	NN
cord-018103-czjjnlkf	106	6	sequences	sequence	NNS
cord-018103-czjjnlkf	106	7	that	that	WDT
cord-018103-czjjnlkf	106	8	were	be	VBD
cord-018103-czjjnlkf	106	9	not	not	RB
cord-018103-czjjnlkf	106	10	located	locate	VBN
cord-018103-czjjnlkf	106	11	in	in	IN
cord-018103-czjjnlkf	106	12	the	the	DT
cord-018103-czjjnlkf	106	13	overlapping	overlap	VBG
cord-018103-czjjnlkf	106	14	region	region	NN
cord-018103-czjjnlkf	106	15	were	be	VBD
cord-018103-czjjnlkf	106	16	filtered	filter	VBN
cord-018103-czjjnlkf	106	17	out	out	RP
cord-018103-czjjnlkf	106	18	.	.	.
cord-018103-czjjnlkf	107	1	Just	just	RB
cord-018103-czjjnlkf	107	2	66	66	CD
cord-018103-czjjnlkf	107	3	sites	site	NNS
cord-018103-czjjnlkf	107	4	remained	remain	VBD
cord-018103-czjjnlkf	107	5	in	in	IN
cord-018103-czjjnlkf	107	6	the	the	DT
cord-018103-czjjnlkf	107	7	overlapping	overlap	VBG
cord-018103-czjjnlkf	107	8	regions	region	NNS
cord-018103-czjjnlkf	107	9	.	.	.
cord-018103-czjjnlkf	108	1	From	from	IN
cord-018103-czjjnlkf	108	2	the	the	DT
cord-018103-czjjnlkf	108	3	gene	gene	NN
cord-018103-czjjnlkf	108	4	length	length	NN
cord-018103-czjjnlkf	108	5	,	,	,
cord-018103-czjjnlkf	108	6	shape	shape	NN
cord-018103-czjjnlkf	108	7	and	and	CC
cord-018103-czjjnlkf	108	8	the	the	DT
cord-018103-czjjnlkf	108	9	length	length	NN
cord-018103-czjjnlkf	108	10	of	of	IN
cord-018103-czjjnlkf	108	11	the	the	DT
cord-018103-czjjnlkf	108	12	overlapping	overlap	VBG
cord-018103-czjjnlkf	108	13	region	region	NN
cord-018103-czjjnlkf	108	14	,	,	,
cord-018103-czjjnlkf	108	15	11	11	CD
cord-018103-czjjnlkf	108	16	sites	site	NNS
cord-018103-czjjnlkf	108	17	including	include	VBG
cord-018103-czjjnlkf	108	18	3	3	CD
cord-018103-czjjnlkf	108	19	known	know	VBN
cord-018103-czjjnlkf	108	20	frameshift	frameshift	NN
cord-018103-czjjnlkf	108	21	sites	site	NNS
cord-018103-czjjnlkf	108	22	were	be	VBD
cord-018103-czjjnlkf	108	23	identified	identify	VBN
cord-018103-czjjnlkf	108	24	as	as	IN
cord-018103-czjjnlkf	108	25	significant	significant	JJ
cord-018103-czjjnlkf	108	26	candidates	candidate	NNS
cord-018103-czjjnlkf	108	27	.	.	.
cord-018103-czjjnlkf	109	1	This	this	DT
cord-018103-czjjnlkf	109	2	process	process	NN
cord-018103-czjjnlkf	109	3	consists	consist	VBZ
cord-018103-czjjnlkf	109	4	of	of	IN
cord-018103-czjjnlkf	109	5	two	two	CD
cord-018103-czjjnlkf	109	6	sub	sub	NN
cord-018103-czjjnlkf	109	7	-	-	NNS
cord-018103-czjjnlkf	109	8	processes	process	NNS
cord-018103-czjjnlkf	109	9	:	:	:
cord-018103-czjjnlkf	109	10	finding	find	VBG
cord-018103-czjjnlkf	109	11	motifs	motif	NNS
cord-018103-czjjnlkf	109	12	and	and	CC
cord-018103-czjjnlkf	109	13	finding	find	VBG
cord-018103-czjjnlkf	109	14	overlapping	overlap	VBG
cord-018103-czjjnlkf	109	15	regions	region	NNS
cord-018103-czjjnlkf	109	16	.	.	.
cord-018103-czjjnlkf	110	1	The	the	DT
cord-018103-czjjnlkf	110	2	E.	E.	NNP
cord-018103-czjjnlkf	110	3	coli	coli	VBZ
cord-018103-czjjnlkf	110	4	K	K	NNP
cord-018103-czjjnlkf	110	5	12	12	CD
cord-018103-czjjnlkf	110	6	genome	genome	NN
cord-018103-czjjnlkf	110	7	sequence	sequence	NN
cord-018103-czjjnlkf	110	8	(	(	-LRB-
cord-018103-czjjnlkf	110	9	NC_000913	NC_000913	NNP
cord-018103-czjjnlkf	110	10	)	)	-RRB-
cord-018103-czjjnlkf	110	11	was	be	VBD
cord-018103-czjjnlkf	110	12	obtained	obtain	VBN
cord-018103-czjjnlkf	110	13	from	from	IN
cord-018103-czjjnlkf	110	14	the	the	DT
cord-018103-czjjnlkf	110	15	GenBank	GenBank	NNP
cord-018103-czjjnlkf	110	16	.	.	.
cord-018103-czjjnlkf	111	1	To	to	TO
cord-018103-czjjnlkf	111	2	find	find	VB
cord-018103-czjjnlkf	111	3	motifs	motif	NNS
cord-018103-czjjnlkf	111	4	,	,	,
cord-018103-czjjnlkf	111	5	all	all	PDT
cord-018103-czjjnlkf	111	6	the	the	DT
cord-018103-czjjnlkf	111	7	heptameric	heptameric	JJ
cord-018103-czjjnlkf	111	8	sequences	sequence	NNS
cord-018103-czjjnlkf	111	9	that	that	WDT
cord-018103-czjjnlkf	111	10	follow	follow	VBP
cord-018103-czjjnlkf	111	11	X	X	NNP
cord-018103-czjjnlkf	111	12	XXY	XXY	NNP
cord-018103-czjjnlkf	111	13	YYZ	YYZ	NNP
cord-018103-czjjnlkf	111	14	motif	motif	NN
cord-018103-czjjnlkf	111	15	were	be	VBD
cord-018103-czjjnlkf	111	16	found	find	VBN
cord-018103-czjjnlkf	111	17	.	.	.
cord-018103-czjjnlkf	112	1	18,401	18,401	CD
cord-018103-czjjnlkf	112	2	sites	site	NNS
cord-018103-czjjnlkf	112	3	were	be	VBD
cord-018103-czjjnlkf	112	4	detected	detect	VBN
cord-018103-czjjnlkf	112	5	.	.	.
cord-018103-czjjnlkf	113	1	According	accord	VBG
cord-018103-czjjnlkf	113	2	to	to	IN
cord-018103-czjjnlkf	113	3	the	the	DT
cord-018103-czjjnlkf	113	4	GenBank	GenBank	NNP
cord-018103-czjjnlkf	113	5	description	description	NN
cord-018103-czjjnlkf	113	6	,	,	,
cord-018103-czjjnlkf	113	7	there	there	EX
cord-018103-czjjnlkf	113	8	were	be	VBD
cord-018103-czjjnlkf	113	9	312	312	CD
cord-018103-czjjnlkf	113	10	candidate	candidate	NN
cord-018103-czjjnlkf	113	11	overlapping	overlap	VBG
cord-018103-czjjnlkf	113	12	regions	region	NNS
cord-018103-czjjnlkf	113	13	that	that	WDT
cord-018103-czjjnlkf	113	14	were	be	VBD
cord-018103-czjjnlkf	113	15	partially	partially	RB
cord-018103-czjjnlkf	113	16	overlapped	overlap	VBN
cord-018103-czjjnlkf	113	17	more	more	JJR
cord-018103-czjjnlkf	113	18	than	than	IN
cord-018103-czjjnlkf	113	19	1	1	CD
cord-018103-czjjnlkf	113	20	base	base	NN
cord-018103-czjjnlkf	113	21	in	in	RB
cord-018103-czjjnlkf	113	22	.	.	.
cord-018103-czjjnlkf	114	1	The	the	DT
cord-018103-czjjnlkf	114	2	FSFinder	FSFinder	NNP
cord-018103-czjjnlkf	114	3	web	web	NN
cord-018103-czjjnlkf	114	4	service	service	NN
cord-018103-czjjnlkf	114	5	found	find	VBD
cord-018103-czjjnlkf	114	6	309	309	CD
cord-018103-czjjnlkf	114	7	candidate	candidate	NN
cord-018103-czjjnlkf	114	8	overlapping	overlap	VBG
cord-018103-czjjnlkf	114	9	regions	region	NNS
cord-018103-czjjnlkf	114	10	that	that	WDT
cord-018103-czjjnlkf	114	11	were	be	VBD
cord-018103-czjjnlkf	114	12	overlapped	overlap	VBN
cord-018103-czjjnlkf	114	13	more	more	JJR
cord-018103-czjjnlkf	114	14	than	than	IN
cord-018103-czjjnlkf	114	15	30	30	CD
cord-018103-czjjnlkf	114	16	bases	basis	NNS
cord-018103-czjjnlkf	114	17	.	.	.
cord-018103-czjjnlkf	115	1	After	after	IN
cord-018103-czjjnlkf	115	2	removing	remove	VBG
cord-018103-czjjnlkf	115	3	redundant	redundant	JJ
cord-018103-czjjnlkf	115	4	sites	site	NNS
cord-018103-czjjnlkf	115	5	,	,	,
cord-018103-czjjnlkf	115	6	we	-PRON-	PRP
cord-018103-czjjnlkf	115	7	obtained	obtain	VBD
cord-018103-czjjnlkf	115	8	195	195	CD
cord-018103-czjjnlkf	115	9	overlapping	overlap	VBG
cord-018103-czjjnlkf	115	10	regions	region	NNS
cord-018103-czjjnlkf	115	11	.	.	.
cord-018103-czjjnlkf	116	1	After	after	IN
cord-018103-czjjnlkf	116	2	further	further	RB
cord-018103-czjjnlkf	116	3	removing	remove	VBG
cord-018103-czjjnlkf	116	4	heptameric	heptameric	NN
cord-018103-czjjnlkf	116	5	sequences	sequence	NNS
cord-018103-czjjnlkf	116	6	that	that	WDT
cord-018103-czjjnlkf	116	7	were	be	VBD
cord-018103-czjjnlkf	116	8	not	not	RB
cord-018103-czjjnlkf	116	9	located	locate	VBN
cord-018103-czjjnlkf	116	10	in	in	IN
cord-018103-czjjnlkf	116	11	the	the	DT
cord-018103-czjjnlkf	116	12	overlapping	overlap	VBG
cord-018103-czjjnlkf	116	13	region	region	NN
cord-018103-czjjnlkf	116	14	,	,	,
cord-018103-czjjnlkf	116	15	66	66	CD
cord-018103-czjjnlkf	116	16	sites	site	NNS
cord-018103-czjjnlkf	116	17	remained	remain	VBD
cord-018103-czjjnlkf	116	18	in	in	IN
cord-018103-czjjnlkf	116	19	the	the	DT
cord-018103-czjjnlkf	116	20	overlapping	overlap	VBG
cord-018103-czjjnlkf	116	21	regions	region	NNS
cord-018103-czjjnlkf	116	22	.	.	.
cord-018103-czjjnlkf	117	1	Considering	consider	VBG
cord-018103-czjjnlkf	117	2	the	the	DT
cord-018103-czjjnlkf	117	3	gene	gene	NN
cord-018103-czjjnlkf	117	4	length	length	NN
cord-018103-czjjnlkf	117	5	,	,	,
cord-018103-czjjnlkf	117	6	shape	shape	NN
cord-018103-czjjnlkf	117	7	and	and	CC
cord-018103-czjjnlkf	117	8	length	length	NN
cord-018103-czjjnlkf	117	9	of	of	IN
cord-018103-czjjnlkf	117	10	the	the	DT
cord-018103-czjjnlkf	117	11	overlapping	overlap	VBG
cord-018103-czjjnlkf	117	12	region	region	NN
cord-018103-czjjnlkf	117	13	,	,	,
cord-018103-czjjnlkf	117	14	11	11	CD
cord-018103-czjjnlkf	117	15	frameshift	frameshift	NN
cord-018103-czjjnlkf	117	16	sites	site	NNS
cord-018103-czjjnlkf	117	17	including	include	VBG
cord-018103-czjjnlkf	117	18	3	3	CD
cord-018103-czjjnlkf	117	19	known	know	VBN
cord-018103-czjjnlkf	117	20	sites	site	NNS
cord-018103-czjjnlkf	117	21	were	be	VBD
cord-018103-czjjnlkf	117	22	considered	consider	VBN
cord-018103-czjjnlkf	117	23	significant	significant	JJ
cord-018103-czjjnlkf	117	24	candidates	candidate	NNS
cord-018103-czjjnlkf	117	25	.	.	.
cord-018103-czjjnlkf	118	1	Table	table	NN
cord-018103-czjjnlkf	118	2	1	1	CD
cord-018103-czjjnlkf	118	3	shows	show	VBZ
cord-018103-czjjnlkf	118	4	the	the	DT
cord-018103-czjjnlkf	118	5	names	name	NNS
cord-018103-czjjnlkf	118	6	of	of	IN
cord-018103-czjjnlkf	118	7	overlapping	overlap	VBG
cord-018103-czjjnlkf	118	8	genes	gene	NNS
cord-018103-czjjnlkf	118	9	,	,	,
cord-018103-czjjnlkf	118	10	the	the	DT
cord-018103-czjjnlkf	118	11	locations	location	NNS
cord-018103-czjjnlkf	118	12	of	of	IN
cord-018103-czjjnlkf	118	13	the	the	DT
cord-018103-czjjnlkf	118	14	slippery	slippery	JJ
cord-018103-czjjnlkf	118	15	sites	site	NNS
cord-018103-czjjnlkf	118	16	,	,	,
cord-018103-czjjnlkf	118	17	slippery	slippery	JJ
cord-018103-czjjnlkf	118	18	sequences	sequence	NNS
cord-018103-czjjnlkf	118	19	and	and	CC
cord-018103-czjjnlkf	118	20	number	number	NN
cord-018103-czjjnlkf	118	21	of	of	IN
cord-018103-czjjnlkf	118	22	overlapped	overlap	VBN
cord-018103-czjjnlkf	118	23	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	118	24	from	from	IN
cord-018103-czjjnlkf	118	25	our	-PRON-	PRP$
cord-018103-czjjnlkf	118	26	analysis	analysis	NN
cord-018103-czjjnlkf	118	27	.	.	.
cord-018103-czjjnlkf	119	1	The	the	DT
cord-018103-czjjnlkf	119	2	three	three	CD
cord-018103-czjjnlkf	119	3	genes	gene	NNS
cord-018103-czjjnlkf	119	4	,	,	,
cord-018103-czjjnlkf	119	5	yi21_1-yi22_1	yi21_1-yi22_1	NN
cord-018103-czjjnlkf	119	6	,	,	,
cord-018103-czjjnlkf	119	7	yi21_5-yi22_5	yi21_5-yi22_5	UH
cord-018103-czjjnlkf	119	8	,	,	,
cord-018103-czjjnlkf	119	9	yi21_6-yi22_6	yi21_6-yi22_6	NNP
cord-018103-czjjnlkf	119	10	,	,	,
cord-018103-czjjnlkf	119	11	are	be	VBP
cord-018103-czjjnlkf	119	12	known	know	VBN
cord-018103-czjjnlkf	119	13	genes	gene	NNS
cord-018103-czjjnlkf	119	14	expressed	express	VBN
cord-018103-czjjnlkf	119	15	via	via	IN
cord-018103-czjjnlkf	119	16	-1	-1	NNP
cord-018103-czjjnlkf	119	17	Table	table	NN
cord-018103-czjjnlkf	119	18	1	1	CD
cord-018103-czjjnlkf	119	19	.	.	.
cord-018103-czjjnlkf	120	1	The	the	DT
cord-018103-czjjnlkf	120	2	predicted	predict	VBN
cord-018103-czjjnlkf	120	3	frameshift	frameshift	NN
cord-018103-czjjnlkf	120	4	sites	site	NNS
cord-018103-czjjnlkf	120	5	in	in	IN
cord-018103-czjjnlkf	120	6	the	the	DT
cord-018103-czjjnlkf	120	7	E.	E.	NNP
cord-018103-czjjnlkf	120	8	coli	coli	VBZ
cord-018103-czjjnlkf	120	9	K	K	NNP
cord-018103-czjjnlkf	120	10	12	12	CD
cord-018103-czjjnlkf	120	11	genome	genome	NN
cord-018103-czjjnlkf	120	12	sequence	sequence	NN
cord-018103-czjjnlkf	120	13	.	.	.
cord-018103-czjjnlkf	121	1	The	the	DT
cord-018103-czjjnlkf	121	2	first	first	JJ
cord-018103-czjjnlkf	121	3	threegenes	threegene	NNS
cord-018103-czjjnlkf	121	4	marked	mark	VBN
cord-018103-czjjnlkf	121	5	with	with	IN
cord-018103-czjjnlkf	121	6	*	*	NFP
cord-018103-czjjnlkf	121	7	symbol	symbol	NN
cord-018103-czjjnlkf	122	1	are	be	VBP
cord-018103-czjjnlkf	122	2	those	those	DT
cord-018103-czjjnlkf	122	3	with	with	IN
cord-018103-czjjnlkf	122	4	known	know	VBN
cord-018103-czjjnlkf	122	5	frameshift	frameshift	NN
cord-018103-czjjnlkf	122	6	sites	site	NNS
cord-018103-czjjnlkf	122	7	.	.	.
cord-018103-czjjnlkf	123	1	PK	PK	NNP
cord-018103-czjjnlkf	123	2	represents	represent	VBZ
cord-018103-czjjnlkf	123	3	a	a	DT
cord-018103-czjjnlkf	123	4	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	123	5	.	.	.
cord-018103-czjjnlkf	124	1	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	124	2	.	.	.
cord-018103-czjjnlkf	125	1	These	these	DT
cord-018103-czjjnlkf	125	2	three	three	CD
cord-018103-czjjnlkf	125	3	genes	gene	NNS
cord-018103-czjjnlkf	125	4	and	and	CC
cord-018103-czjjnlkf	125	5	insA_6-insB_6	insA_6-insB_6	NNS
cord-018103-czjjnlkf	125	6	are	be	VBP
cord-018103-czjjnlkf	125	7	insertion	insertion	NN
cord-018103-czjjnlkf	125	8	sequences	sequence	NNS
cord-018103-czjjnlkf	125	9	.	.	.
cord-018103-czjjnlkf	126	1	We	-PRON-	PRP
cord-018103-czjjnlkf	126	2	believe	believe	VBP
cord-018103-czjjnlkf	126	3	that	that	IN
cord-018103-czjjnlkf	126	4	entB	entB	NNP
cord-018103-czjjnlkf	126	5	-	-	HYPH
cord-018103-czjjnlkf	126	6	entA	enta	NN
cord-018103-czjjnlkf	126	7	,	,	,
cord-018103-czjjnlkf	126	8	tehA	tehA	NNS
cord-018103-czjjnlkf	126	9	-	-	HYPH
cord-018103-czjjnlkf	126	10	tehB	tehb	CD
cord-018103-czjjnlkf	126	11	,	,	,
cord-018103-czjjnlkf	126	12	and	and	CC
cord-018103-czjjnlkf	126	13	xdhB	xdhB	NNP
cord-018103-czjjnlkf	126	14	-	-	:
cord-018103-czjjnlkf	126	15	xdhC	xdhc	NN
cord-018103-czjjnlkf	126	16	have	have	VBP
cord-018103-czjjnlkf	126	17	a	a	DT
cord-018103-czjjnlkf	126	18	high	high	JJ
cord-018103-czjjnlkf	126	19	probability	probability	NN
cord-018103-czjjnlkf	126	20	using	use	VBG
cord-018103-czjjnlkf	126	21	frameshift	frameshift	NN
cord-018103-czjjnlkf	126	22	events	event	NNS
cord-018103-czjjnlkf	126	23	.	.	.
cord-018103-czjjnlkf	127	1	All	all	PDT
cord-018103-czjjnlkf	127	2	these	these	DT
cord-018103-czjjnlkf	127	3	seven	seven	CD
cord-018103-czjjnlkf	127	4	genes	gene	NNS
cord-018103-czjjnlkf	127	5	have	have	VBP
cord-018103-czjjnlkf	127	6	either	either	CC
cord-018103-czjjnlkf	127	7	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	127	8	or	or	CC
cord-018103-czjjnlkf	127	9	stem	stem	VB
cord-018103-czjjnlkf	127	10	loop	loop	NN
cord-018103-czjjnlkf	127	11	as	as	IN
cord-018103-czjjnlkf	127	12	a	a	DT
cord-018103-czjjnlkf	127	13	downstream	downstream	JJ
cord-018103-czjjnlkf	127	14	secondary	secondary	JJ
cord-018103-czjjnlkf	127	15	structure	structure	NN
cord-018103-czjjnlkf	127	16	.	.	.
cord-018103-czjjnlkf	128	1	The	the	DT
cord-018103-czjjnlkf	128	2	rest	rest	NN
cord-018103-czjjnlkf	128	3	four	four	CD
cord-018103-czjjnlkf	128	4	genes	gene	NNS
cord-018103-czjjnlkf	128	5	,	,	,
cord-018103-czjjnlkf	128	6	mhpD	mhpD	NNPS
cord-018103-czjjnlkf	128	7	-	-	HYPH
cord-018103-czjjnlkf	128	8	mhpF	mhpf	JJ
cord-018103-czjjnlkf	128	9	,	,	,
cord-018103-czjjnlkf	128	10	fliM	fliM	NNS
cord-018103-czjjnlkf	128	11	-	-	HYPH
cord-018103-czjjnlkf	128	12	fliN	flin	CD
cord-018103-czjjnlkf	128	13	,	,	,
cord-018103-czjjnlkf	128	14	atoS	atos	NN
cord-018103-czjjnlkf	128	15	-	-	HYPH
cord-018103-czjjnlkf	128	16	atoC	atoc	NN
cord-018103-czjjnlkf	128	17	and	and	CC
cord-018103-czjjnlkf	128	18	yijC	yijC	NNP
cord-018103-czjjnlkf	128	19	-	-	HYPH
cord-018103-czjjnlkf	128	20	yijD	yijD	NNP
cord-018103-czjjnlkf	128	21	,	,	,
cord-018103-czjjnlkf	128	22	have	have	VBP
cord-018103-czjjnlkf	128	23	no	no	DT
cord-018103-czjjnlkf	128	24	downstream	downstream	JJ
cord-018103-czjjnlkf	128	25	secondary	secondary	JJ
cord-018103-czjjnlkf	128	26	structures	structure	NNS
cord-018103-czjjnlkf	128	27	and	and	CC
cord-018103-czjjnlkf	128	28	have	have	VBP
cord-018103-czjjnlkf	128	29	a	a	DT
cord-018103-czjjnlkf	128	30	lower	low	JJR
cord-018103-czjjnlkf	128	31	probability	probability	NN
cord-018103-czjjnlkf	128	32	of	of	IN
cord-018103-czjjnlkf	128	33	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	128	34	than	than	IN
cord-018103-czjjnlkf	128	35	the	the	DT
cord-018103-czjjnlkf	128	36	other	other	JJ
cord-018103-czjjnlkf	128	37	7	7	CD
cord-018103-czjjnlkf	128	38	genes	gene	NNS
cord-018103-czjjnlkf	128	39	.	.	.
cord-018103-czjjnlkf	129	1	There	there	EX
cord-018103-czjjnlkf	129	2	exist	exist	VBP
cord-018103-czjjnlkf	129	3	previous	previous	JJ
cord-018103-czjjnlkf	129	4	works	work	NNS
cord-018103-czjjnlkf	129	5	similar	similar	JJ
cord-018103-czjjnlkf	129	6	to	to	IN
cord-018103-czjjnlkf	129	7	our	-PRON-	PRP$
cord-018103-czjjnlkf	129	8	approach	approach	NN
cord-018103-czjjnlkf	129	9	.	.	.
cord-018103-czjjnlkf	130	1	Hammell	Hammell	NNP
cord-018103-czjjnlkf	130	2	et	et	FW
cord-018103-czjjnlkf	130	3	al	al	NNP
cord-018103-czjjnlkf	130	4	.	.	.
cord-018103-czjjnlkf	131	1	[	[	-LRB-
cord-018103-czjjnlkf	131	2	7	7	CD
cord-018103-czjjnlkf	131	3	]	]	-RRB-
cord-018103-czjjnlkf	131	4	studied	study	VBN
cord-018103-czjjnlkf	131	5	-1	-1	NN
cord-018103-czjjnlkf	131	6	ribosomal	ribosomal	JJ
cord-018103-czjjnlkf	131	7	frameshift	frameshift	NN
cord-018103-czjjnlkf	131	8	signals	signal	NNS
cord-018103-czjjnlkf	131	9	in	in	IN
cord-018103-czjjnlkf	131	10	the	the	DT
cord-018103-czjjnlkf	131	11	large	large	JJ
cord-018103-czjjnlkf	131	12	databases	database	NNS
cord-018103-czjjnlkf	131	13	.	.	.
cord-018103-czjjnlkf	132	1	Using	use	VBG
cord-018103-czjjnlkf	132	2	their	-PRON-	PRP$
cord-018103-czjjnlkf	132	3	well	well	RB
cord-018103-czjjnlkf	132	4	-	-	HYPH
cord-018103-czjjnlkf	132	5	established	establish	VBN
cord-018103-czjjnlkf	132	6	model	model	NN
cord-018103-czjjnlkf	132	7	,	,	,
cord-018103-czjjnlkf	132	8	they	-PRON-	PRP
cord-018103-czjjnlkf	132	9	found	find	VBD
cord-018103-czjjnlkf	132	10	that	that	IN
cord-018103-czjjnlkf	132	11	-1	-1	NNP
cord-018103-czjjnlkf	132	12	frameshifts	frameshift	NNS
cord-018103-czjjnlkf	132	13	occur	occur	VBP
cord-018103-czjjnlkf	132	14	with	with	IN
cord-018103-czjjnlkf	132	15	frequencies	frequency	NNS
cord-018103-czjjnlkf	132	16	from	from	IN
cord-018103-czjjnlkf	132	17	two	two	CD
cord-018103-czjjnlkf	132	18	-	-	HYPH
cord-018103-czjjnlkf	132	19	to	to	TO
cord-018103-czjjnlkf	132	20	six	six	CD
cord-018103-czjjnlkf	132	21	-	-	RB
cord-018103-czjjnlkf	132	22	fold	fold	RB
cord-018103-czjjnlkf	132	23	greater	great	JJR
cord-018103-czjjnlkf	132	24	than	than	IN
cord-018103-czjjnlkf	132	25	random	random	JJ
cord-018103-czjjnlkf	132	26	.	.	.
cord-018103-czjjnlkf	133	1	They	-PRON-	PRP
cord-018103-czjjnlkf	133	2	considered	consider	VBD
cord-018103-czjjnlkf	133	3	the	the	DT
cord-018103-czjjnlkf	133	4	nucleotides	nucleotide	NNS
cord-018103-czjjnlkf	133	5	of	of	IN
cord-018103-czjjnlkf	133	6	a	a	DT
cord-018103-czjjnlkf	133	7	frameshift	frameshift	NN
cord-018103-czjjnlkf	133	8	site	site	NN
cord-018103-czjjnlkf	133	9	,	,	,
cord-018103-czjjnlkf	133	10	spacer	spacer	NN
cord-018103-czjjnlkf	133	11	,	,	,
cord-018103-czjjnlkf	133	12	and	and	CC
cord-018103-czjjnlkf	133	13	pseudoknot	pseudoknot	NNP
cord-018103-czjjnlkf	133	14	.	.	.
cord-018103-czjjnlkf	134	1	However	however	RB
cord-018103-czjjnlkf	134	2	,	,	,
cord-018103-czjjnlkf	134	3	they	-PRON-	PRP
cord-018103-czjjnlkf	134	4	focused	focus	VBD
cord-018103-czjjnlkf	134	5	on	on	IN
cord-018103-czjjnlkf	134	6	the	the	DT
cord-018103-czjjnlkf	134	7	-1	-1	NNP
cord-018103-czjjnlkf	134	8	frameshifts	frameshifts	NNP
cord-018103-czjjnlkf	134	9	only	only	RB
cord-018103-czjjnlkf	134	10	.	.	.
cord-018103-czjjnlkf	135	1	Bekaert	Bekaert	NNP
cord-018103-czjjnlkf	135	2	et	et	NNP
cord-018103-czjjnlkf	135	3	al	al	NNP
cord-018103-czjjnlkf	135	4	.	.	.
cord-018103-czjjnlkf	136	1	[	[	-LRB-
cord-018103-czjjnlkf	136	2	6	6	CD
cord-018103-czjjnlkf	136	3	]	]	-RRB-
cord-018103-czjjnlkf	136	4	performed	perform	VBD
cord-018103-czjjnlkf	136	5	a	a	DT
cord-018103-czjjnlkf	136	6	computational	computational	JJ
cord-018103-czjjnlkf	136	7	method	method	NN
cord-018103-czjjnlkf	136	8	similar	similar	JJ
cord-018103-czjjnlkf	136	9	to	to	IN
cord-018103-czjjnlkf	136	10	Hammell	Hammell	NNP
cord-018103-czjjnlkf	136	11	's	's	POS
cord-018103-czjjnlkf	136	12	approach	approach	NN
cord-018103-czjjnlkf	136	13	.	.	.
cord-018103-czjjnlkf	137	1	From	from	IN
cord-018103-czjjnlkf	137	2	their	-PRON-	PRP$
cord-018103-czjjnlkf	137	3	model	model	NN
cord-018103-czjjnlkf	137	4	,	,	,
cord-018103-czjjnlkf	137	5	they	-PRON-	PRP
cord-018103-czjjnlkf	137	6	designed	design	VBD
cord-018103-czjjnlkf	137	7	a	a	DT
cord-018103-czjjnlkf	137	8	model	model	NN
cord-018103-czjjnlkf	137	9	for	for	IN
cord-018103-czjjnlkf	137	10	-1	-1	CD
cord-018103-czjjnlkf	137	11	eukaryotic	eukaryotic	JJ
cord-018103-czjjnlkf	137	12	frameshifting	frameshifting	NN
cord-018103-czjjnlkf	137	13	.	.	.
cord-018103-czjjnlkf	138	1	But	but	CC
cord-018103-czjjnlkf	138	2	these	these	DT
cord-018103-czjjnlkf	138	3	two	two	CD
cord-018103-czjjnlkf	138	4	programs	program	NNS
cord-018103-czjjnlkf	138	5	are	be	VBP
cord-018103-czjjnlkf	138	6	not	not	RB
cord-018103-czjjnlkf	138	7	available	available	JJ
cord-018103-czjjnlkf	138	8	for	for	IN
cord-018103-czjjnlkf	138	9	public	public	JJ
cord-018103-czjjnlkf	138	10	use	use	NN
cord-018103-czjjnlkf	138	11	.	.	.
cord-018103-czjjnlkf	139	1	The	the	DT
cord-018103-czjjnlkf	139	2	FreqAnalysis	FreqAnalysis	NNP
cord-018103-czjjnlkf	139	3	[	[	-LRB-
cord-018103-czjjnlkf	139	4	9	9	CD
cord-018103-czjjnlkf	139	5	]	]	-RRB-
cord-018103-czjjnlkf	139	6	is	be	VBZ
cord-018103-czjjnlkf	139	7	an	an	DT
cord-018103-czjjnlkf	139	8	application	application	NN
cord-018103-czjjnlkf	139	9	program	program	NN
cord-018103-czjjnlkf	139	10	available	available	JJ
cord-018103-czjjnlkf	139	11	for	for	IN
cord-018103-czjjnlkf	139	12	public	public	JJ
cord-018103-czjjnlkf	139	13	use	use	NN
cord-018103-czjjnlkf	139	14	.	.	.
cord-018103-czjjnlkf	140	1	FreqAnalysis	FreqAnalysis	NNP
cord-018103-czjjnlkf	140	2	was	be	VBD
cord-018103-czjjnlkf	140	3	implemented	implement	VBN
cord-018103-czjjnlkf	140	4	in	in	IN
cord-018103-czjjnlkf	140	5	the	the	DT
cord-018103-czjjnlkf	140	6	Java	Java	NNP
cord-018103-czjjnlkf	140	7	language	language	NN
cord-018103-czjjnlkf	140	8	and	and	CC
cord-018103-czjjnlkf	140	9	can	can	MD
cord-018103-czjjnlkf	140	10	find	find	VB
cord-018103-czjjnlkf	140	11	putative	putative	JJ
cord-018103-czjjnlkf	140	12	translational	translational	JJ
cord-018103-czjjnlkf	140	13	frameshift	frameshift	NN
cord-018103-czjjnlkf	140	14	from	from	IN
cord-018103-czjjnlkf	140	15	probabilistic	probabilistic	JJ
cord-018103-czjjnlkf	140	16	calculation	calculation	NN
cord-018103-czjjnlkf	140	17	.	.	.
cord-018103-czjjnlkf	141	1	In	in	IN
cord-018103-czjjnlkf	141	2	fact	fact	NN
cord-018103-czjjnlkf	141	3	,	,	,
cord-018103-czjjnlkf	141	4	Shah	Shah	NNP
cord-018103-czjjnlkf	141	5	et	et	NNP
cord-018103-czjjnlkf	141	6	al	al	NNP
cord-018103-czjjnlkf	141	7	.	.	.
cord-018103-czjjnlkf	142	1	[	[	-LRB-
cord-018103-czjjnlkf	142	2	9	9	CD
cord-018103-czjjnlkf	142	3	]	]	-RRB-
cord-018103-czjjnlkf	142	4	found	find	VBD
cord-018103-czjjnlkf	142	5	putative	putative	JJ
cord-018103-czjjnlkf	142	6	frameshift	frameshift	NN
cord-018103-czjjnlkf	142	7	sites	site	NNS
cord-018103-czjjnlkf	142	8	from	from	IN
cord-018103-czjjnlkf	142	9	the	the	DT
cord-018103-czjjnlkf	142	10	Sacharomyces	Sacharomyces	NNP
cord-018103-czjjnlkf	142	11	cerevisiae	cerevisiae	NNS
cord-018103-czjjnlkf	142	12	ORFs	orfs	NN
cord-018103-czjjnlkf	142	13	.	.	.
cord-018103-czjjnlkf	143	1	But	but	CC
cord-018103-czjjnlkf	143	2	FreqAnalysis	FreqAnalysis	NNP
cord-018103-czjjnlkf	143	3	does	do	VBZ
cord-018103-czjjnlkf	143	4	not	not	RB
cord-018103-czjjnlkf	143	5	consider	consider	VB
cord-018103-czjjnlkf	143	6	the	the	DT
cord-018103-czjjnlkf	143	7	X	x	NN
cord-018103-czjjnlkf	143	8	XXY	XXY	NNP
cord-018103-czjjnlkf	143	9	YYZ	YYZ	NNP
cord-018103-czjjnlkf	143	10	frameshift	frameshift	NN
cord-018103-czjjnlkf	143	11	motif	motif	NN
cord-018103-czjjnlkf	143	12	.	.	.
cord-018103-czjjnlkf	144	1	Thus	thus	RB
cord-018103-czjjnlkf	144	2	it	-PRON-	PRP
cord-018103-czjjnlkf	144	3	is	be	VBZ
cord-018103-czjjnlkf	144	4	hard	hard	JJ
cord-018103-czjjnlkf	144	5	to	to	TO
cord-018103-czjjnlkf	144	6	compare	compare	VB
cord-018103-czjjnlkf	144	7	the	the	DT
cord-018103-czjjnlkf	144	8	results	result	NNS
cord-018103-czjjnlkf	144	9	of	of	IN
cord-018103-czjjnlkf	144	10	FreqAnalysis	FreqAnalysis	NNP
cord-018103-czjjnlkf	144	11	with	with	IN
cord-018103-czjjnlkf	144	12	ours	our	NNS
cord-018103-czjjnlkf	144	13	directly	directly	RB
cord-018103-czjjnlkf	144	14	.	.	.
cord-018103-czjjnlkf	145	1	Fig	Fig	NNP
cord-018103-czjjnlkf	145	2	.	.	NNP
cord-018103-czjjnlkf	145	3	7	7	CD
cord-018103-czjjnlkf	145	4	shows	show	VBZ
cord-018103-czjjnlkf	145	5	the	the	DT
cord-018103-czjjnlkf	145	6	result	result	NN
cord-018103-czjjnlkf	145	7	of	of	IN
cord-018103-czjjnlkf	145	8	the	the	DT
cord-018103-czjjnlkf	145	9	FSFinder2	FSFinder2	NNP
cord-018103-czjjnlkf	145	10	.	.	.
cord-018103-czjjnlkf	146	1	Two	two	CD
cord-018103-czjjnlkf	146	2	rectangles	rectangle	NNS
cord-018103-czjjnlkf	146	3	filled	fill	VBN
cord-018103-czjjnlkf	146	4	with	with	IN
cord-018103-czjjnlkf	146	5	sky	sky	NN
cord-018103-czjjnlkf	146	6	blue	blue	JJ
cord-018103-czjjnlkf	146	7	color	color	NN
cord-018103-czjjnlkf	146	8	in	in	IN
cord-018103-czjjnlkf	146	9	the	the	DT
cord-018103-czjjnlkf	146	10	upper	upper	JJ
cord-018103-czjjnlkf	146	11	window	window	NN
cord-018103-czjjnlkf	146	12	represent	represent	VBP
cord-018103-czjjnlkf	146	13	i21_1	i21_1	NNS
cord-018103-czjjnlkf	146	14	and	and	CC
cord-018103-czjjnlkf	146	15	yi22_1	yi22_1	CD
cord-018103-czjjnlkf	146	16	,	,	,
cord-018103-czjjnlkf	146	17	respectively	respectively	RB
cord-018103-czjjnlkf	146	18	.	.	.
cord-018103-czjjnlkf	147	1	The	the	DT
cord-018103-czjjnlkf	147	2	i21_1	i21_1	NN
cord-018103-czjjnlkf	147	3	gene	gene	NN
cord-018103-czjjnlkf	147	4	located	locate	VBN
cord-018103-czjjnlkf	147	5	in	in	IN
cord-018103-czjjnlkf	147	6	0	0	CD
cord-018103-czjjnlkf	147	7	frame	frame	NN
cord-018103-czjjnlkf	147	8	and	and	CC
cord-018103-czjjnlkf	147	9	the	the	DT
cord-018103-czjjnlkf	147	10	yi22_1	yi22_1	CD
cord-018103-czjjnlkf	147	11	gene	gene	NN
cord-018103-czjjnlkf	147	12	located	locate	VBN
cord-018103-czjjnlkf	147	13	in	in	IN
cord-018103-czjjnlkf	147	14	-1	-1	JJ
cord-018103-czjjnlkf	147	15	frame	frame	NN
cord-018103-czjjnlkf	147	16	are	be	VBP
cord-018103-czjjnlkf	147	17	partially	partially	RB
cord-018103-czjjnlkf	147	18	overlapped	overlap	VBN
cord-018103-czjjnlkf	147	19	.	.	.
cord-018103-czjjnlkf	148	1	When	when	WRB
cord-018103-czjjnlkf	148	2	translational	translational	JJ
cord-018103-czjjnlkf	148	3	frameshift	frameshift	NN
cord-018103-czjjnlkf	148	4	occurs	occur	VBZ
cord-018103-czjjnlkf	148	5	,	,	,
cord-018103-czjjnlkf	148	6	translation	translation	NN
cord-018103-czjjnlkf	148	7	continues	continue	VBZ
cord-018103-czjjnlkf	148	8	past	past	IN
cord-018103-czjjnlkf	148	9	the	the	DT
cord-018103-czjjnlkf	148	10	stop	stop	NN
cord-018103-czjjnlkf	148	11	codon	codon	NN
cord-018103-czjjnlkf	148	12	at	at	IN
cord-018103-czjjnlkf	148	13	380,938	380,938	CD
cord-018103-czjjnlkf	148	14	until	until	IN
cord-018103-czjjnlkf	148	15	the	the	DT
cord-018103-czjjnlkf	148	16	stop	stop	NN
cord-018103-czjjnlkf	148	17	codon	codon	NN
cord-018103-czjjnlkf	148	18	at	at	IN
cord-018103-czjjnlkf	148	19	381,801	381,801	CD
cord-018103-czjjnlkf	148	20	.	.	.
cord-018103-czjjnlkf	149	1	Ribosomal	Ribosomal	NNP
cord-018103-czjjnlkf	149	2	frameshifting	frameshifte	VBG
cord-018103-czjjnlkf	149	3	is	be	VBZ
cord-018103-czjjnlkf	149	4	unusual	unusual	JJ
cord-018103-czjjnlkf	149	5	event	event	NN
cord-018103-czjjnlkf	149	6	which	which	WDT
cord-018103-czjjnlkf	149	7	is	be	VBZ
cord-018103-czjjnlkf	149	8	known	know	VBN
cord-018103-czjjnlkf	149	9	to	to	TO
cord-018103-czjjnlkf	149	10	affect	affect	VB
cord-018103-czjjnlkf	149	11	producing	produce	VBG
cord-018103-czjjnlkf	149	12	heterogeneous	heterogeneous	JJ
cord-018103-czjjnlkf	149	13	proteins	protein	NNS
cord-018103-czjjnlkf	149	14	,	,	,
cord-018103-czjjnlkf	149	15	auto	auto	NN
cord-018103-czjjnlkf	149	16	-	-	HYPH
cord-018103-czjjnlkf	149	17	regulation	regulation	NN
cord-018103-czjjnlkf	149	18	.	.	.
cord-018103-czjjnlkf	150	1	Prediction	prediction	NN
cord-018103-czjjnlkf	150	2	of	of	IN
cord-018103-czjjnlkf	150	3	frameshift	frameshift	NN
cord-018103-czjjnlkf	150	4	sites	site	NNS
cord-018103-czjjnlkf	150	5	is	be	VBZ
cord-018103-czjjnlkf	150	6	very	very	RB
cord-018103-czjjnlkf	150	7	difficult	difficult	JJ
cord-018103-czjjnlkf	150	8	.	.	.
cord-018103-czjjnlkf	151	1	On	on	IN
cord-018103-czjjnlkf	151	2	the	the	DT
cord-018103-czjjnlkf	151	3	other	other	JJ
cord-018103-czjjnlkf	151	4	hand	hand	NN
cord-018103-czjjnlkf	151	5	if	if	IN
cord-018103-czjjnlkf	151	6	prediction	prediction	NN
cord-018103-czjjnlkf	151	7	is	be	VBZ
cord-018103-czjjnlkf	151	8	possible	possible	JJ
cord-018103-czjjnlkf	151	9	,	,	,
cord-018103-czjjnlkf	151	10	this	this	DT
cord-018103-czjjnlkf	151	11	is	be	VBZ
cord-018103-czjjnlkf	151	12	very	very	RB
cord-018103-czjjnlkf	151	13	useful	useful	JJ
cord-018103-czjjnlkf	151	14	to	to	TO
cord-018103-czjjnlkf	151	15	understand	understand	VB
cord-018103-czjjnlkf	151	16	of	of	IN
cord-018103-czjjnlkf	151	17	biological	biological	JJ
cord-018103-czjjnlkf	151	18	phenomenon	phenomenon	NN
cord-018103-czjjnlkf	151	19	.	.	.
cord-018103-czjjnlkf	152	1	And	and	CC
cord-018103-czjjnlkf	152	2	unveiling	unveil	VBG
cord-018103-czjjnlkf	152	3	of	of	IN
cord-018103-czjjnlkf	152	4	unknown	unknown	JJ
cord-018103-czjjnlkf	152	5	protein	protein	NN
cord-018103-czjjnlkf	152	6	production	production	NN
cord-018103-czjjnlkf	152	7	mechanisms	mechanism	NNS
cord-018103-czjjnlkf	152	8	can	can	MD
cord-018103-czjjnlkf	152	9	be	be	VB
cord-018103-czjjnlkf	152	10	realized	realize	VBN
cord-018103-czjjnlkf	152	11	.	.	.
cord-018103-czjjnlkf	153	1	For	for	IN
cord-018103-czjjnlkf	153	2	this	this	DT
cord-018103-czjjnlkf	153	3	valuable	valuable	JJ
cord-018103-czjjnlkf	153	4	advantage	advantage	NN
cord-018103-czjjnlkf	153	5	,	,	,
cord-018103-czjjnlkf	153	6	we	-PRON-	PRP
cord-018103-czjjnlkf	153	7	develop	develop	VBP
cord-018103-czjjnlkf	153	8	a	a	DT
cord-018103-czjjnlkf	153	9	web	web	NN
cord-018103-czjjnlkf	153	10	application	application	NN
cord-018103-czjjnlkf	153	11	and	and	CC
cord-018103-czjjnlkf	153	12	serve	serve	VB
cord-018103-czjjnlkf	153	13	web	web	NN
cord-018103-czjjnlkf	153	14	service	service	NN
cord-018103-czjjnlkf	153	15	for	for	IN
cord-018103-czjjnlkf	153	16	prediction	prediction	NN
cord-018103-czjjnlkf	153	17	of	of	IN
cord-018103-czjjnlkf	153	18	frameshift	frameshift	NN
cord-018103-czjjnlkf	153	19	sites	site	NNS
cord-018103-czjjnlkf	153	20	.	.	.
cord-018103-czjjnlkf	154	1	Using	use	VBG
cord-018103-czjjnlkf	154	2	the	the	DT
cord-018103-czjjnlkf	154	3	FSFinder	FSFinder	NNPS
cord-018103-czjjnlkf	154	4	,	,	,
cord-018103-czjjnlkf	154	5	we	-PRON-	PRP
cord-018103-czjjnlkf	154	6	analyzed	analyze	VBD
cord-018103-czjjnlkf	154	7	Escherichia	Escherichia	NNP
cord-018103-czjjnlkf	154	8	coli	coli	VBZ
cord-018103-czjjnlkf	154	9	K	K	NNP
cord-018103-czjjnlkf	154	10	12	12	CD
cord-018103-czjjnlkf	154	11	genome	genome	NN
cord-018103-czjjnlkf	154	12	sequence	sequence	NN
cord-018103-czjjnlkf	154	13	to	to	TO
cord-018103-czjjnlkf	154	14	detect	detect	VB
cord-018103-czjjnlkf	154	15	potential	potential	JJ
cord-018103-czjjnlkf	154	16	-1	-1	NN
cord-018103-czjjnlkf	154	17	frameshifting	frameshifting	JJ
cord-018103-czjjnlkf	154	18	genes	gene	NNS
cord-018103-czjjnlkf	154	19	.	.	.
cord-018103-czjjnlkf	155	1	From	from	IN
cord-018103-czjjnlkf	155	2	the	the	DT
cord-018103-czjjnlkf	155	3	E.	E.	NNP
cord-018103-czjjnlkf	155	4	coli	coli	VBZ
cord-018103-czjjnlkf	155	5	K	K	NNP
cord-018103-czjjnlkf	155	6	12	12	CD
cord-018103-czjjnlkf	155	7	genome	genome	NN
cord-018103-czjjnlkf	155	8	sequence	sequence	NN
cord-018103-czjjnlkf	155	9	,	,	,
cord-018103-czjjnlkf	155	10	we	-PRON-	PRP
cord-018103-czjjnlkf	155	11	have	have	VBP
cord-018103-czjjnlkf	155	12	got	get	VBN
cord-018103-czjjnlkf	155	13	18,401	18,401	CD
cord-018103-czjjnlkf	155	14	frameshift	frameshift	NN
cord-018103-czjjnlkf	155	15	sites	site	NNS
cord-018103-czjjnlkf	155	16	followed	follow	VBD
cord-018103-czjjnlkf	155	17	X	X	NNP
cord-018103-czjjnlkf	155	18	XXY	XXY	NNP
cord-018103-czjjnlkf	155	19	YYZ	YYZ	NNP
cord-018103-czjjnlkf	155	20	motif	motif	NN
cord-018103-czjjnlkf	155	21	.	.	.
cord-018103-czjjnlkf	156	1	Among	among	IN
cord-018103-czjjnlkf	156	2	these	these	DT
cord-018103-czjjnlkf	156	3	sequences	sequence	NNS
cord-018103-czjjnlkf	156	4	,	,	,
cord-018103-czjjnlkf	156	5	11,530	11,530	CD
cord-018103-czjjnlkf	156	6	frameshift	frameshift	NN
cord-018103-czjjnlkf	156	7	sites	site	NNS
cord-018103-czjjnlkf	156	8	included	include	VBD
cord-018103-czjjnlkf	156	9	secondary	secondary	JJ
cord-018103-czjjnlkf	156	10	structure	structure	NN
cord-018103-czjjnlkf	156	11	.	.	.
cord-018103-czjjnlkf	157	1	Comparing	compare	VBG
cord-018103-czjjnlkf	157	2	with	with	IN
cord-018103-czjjnlkf	157	3	GenBank	GenBank	NNP
cord-018103-czjjnlkf	157	4	description	description	NN
cord-018103-czjjnlkf	157	5	,	,	,
cord-018103-czjjnlkf	157	6	we	-PRON-	PRP
cord-018103-czjjnlkf	157	7	have	have	VBP
cord-018103-czjjnlkf	157	8	got	get	VBN
cord-018103-czjjnlkf	157	9	11	11	CD
cord-018103-czjjnlkf	157	10	sequences	sequence	NNS
cord-018103-czjjnlkf	157	11	including	include	VBG
cord-018103-czjjnlkf	157	12	3	3	CD
cord-018103-czjjnlkf	157	13	known	know	VBN
cord-018103-czjjnlkf	157	14	frameshift	frameshift	NN
cord-018103-czjjnlkf	157	15	sites	site	NNS
cord-018103-czjjnlkf	157	16	.	.	.
cord-018103-czjjnlkf	158	1	Among	among	IN
cord-018103-czjjnlkf	158	2	these	these	DT
cord-018103-czjjnlkf	158	3	sequences	sequence	NNS
cord-018103-czjjnlkf	158	4	,	,	,
cord-018103-czjjnlkf	158	5	we	-PRON-	PRP
cord-018103-czjjnlkf	158	6	believe	believe	VBP
cord-018103-czjjnlkf	158	7	that	that	IN
cord-018103-czjjnlkf	158	8	at	at	RB
cord-018103-czjjnlkf	158	9	least	least	JJS
cord-018103-czjjnlkf	158	10	4	4	CD
cord-018103-czjjnlkf	158	11	sequences	sequence	NNS
cord-018103-czjjnlkf	158	12	have	have	VBP
cord-018103-czjjnlkf	158	13	a	a	DT
cord-018103-czjjnlkf	158	14	high	high	JJ
cord-018103-czjjnlkf	158	15	probability	probability	NN
cord-018103-czjjnlkf	158	16	to	to	TO
cord-018103-czjjnlkf	158	17	use	use	VB
cord-018103-czjjnlkf	158	18	frameshift	frameshift	NN
cord-018103-czjjnlkf	158	19	event	event	NN
cord-018103-czjjnlkf	158	20	and	and	CC
cord-018103-czjjnlkf	158	21	all	all	PDT
cord-018103-czjjnlkf	158	22	these	these	DT
cord-018103-czjjnlkf	158	23	4	4	CD
cord-018103-czjjnlkf	158	24	sites	site	NNS
cord-018103-czjjnlkf	158	25	have	have	VBP
cord-018103-czjjnlkf	158	26	a	a	DT
cord-018103-czjjnlkf	158	27	downstream	downstream	JJ
cord-018103-czjjnlkf	158	28	secondary	secondary	JJ
cord-018103-czjjnlkf	158	29	structure	structure	NN
cord-018103-czjjnlkf	158	30	such	such	JJ
cord-018103-czjjnlkf	158	31	as	as	IN
cord-018103-czjjnlkf	158	32	pseudoknot	pseudoknot	NN
cord-018103-czjjnlkf	158	33	and	and	CC
cord-018103-czjjnlkf	158	34	stem	stem	VB
cord-018103-czjjnlkf	158	35	loops	loop	NNS
cord-018103-czjjnlkf	158	36	.	.	.
cord-018103-czjjnlkf	159	1	Other	other	JJ
cord-018103-czjjnlkf	159	2	4	4	CD
cord-018103-czjjnlkf	159	3	gene	gene	NN
cord-018103-czjjnlkf	159	4	do	do	VBP
cord-018103-czjjnlkf	159	5	not	not	RB
cord-018103-czjjnlkf	159	6	have	have	VB
cord-018103-czjjnlkf	159	7	downstream	downstream	JJ
cord-018103-czjjnlkf	159	8	structure	structure	NN
cord-018103-czjjnlkf	159	9	,	,	,
cord-018103-czjjnlkf	159	10	but	but	CC
cord-018103-czjjnlkf	159	11	we	-PRON-	PRP
cord-018103-czjjnlkf	159	12	believe	believe	VBP
cord-018103-czjjnlkf	159	13	that	that	IN
cord-018103-czjjnlkf	159	14	these	these	DT
cord-018103-czjjnlkf	159	15	sequences	sequence	NNS
cord-018103-czjjnlkf	159	16	have	have	VBP
cord-018103-czjjnlkf	159	17	less	less	JJR
cord-018103-czjjnlkf	159	18	probabilities	probability	NNS
cord-018103-czjjnlkf	159	19	than	than	IN
cord-018103-czjjnlkf	159	20	above	above	IN
cord-018103-czjjnlkf	159	21	7	7	CD
cord-018103-czjjnlkf	159	22	genes	gene	NNS
cord-018103-czjjnlkf	159	23	but	but	CC
cord-018103-czjjnlkf	159	24	significant	significant	JJ
cord-018103-czjjnlkf	159	25	.	.	.
cord-018103-czjjnlkf	160	1	Programmed	program	VBN
cord-018103-czjjnlkf	160	2	Translational	Translational	NNP
cord-018103-czjjnlkf	160	3	Frameshifting	Frameshifting	NNP
cord-018103-czjjnlkf	160	4	Recoding	recoding	NN
cord-018103-czjjnlkf	160	5	:	:	:
cord-018103-czjjnlkf	160	6	Dynamic	dynamic	JJ
cord-018103-czjjnlkf	160	7	Reprogramming	reprogramming	NN
cord-018103-czjjnlkf	160	8	of	of	IN
cord-018103-czjjnlkf	161	1	Translation	translation	NN
cord-018103-czjjnlkf	161	2	One	one	CD
cord-018103-czjjnlkf	161	3	Protein	protein	NN
cord-018103-czjjnlkf	161	4	From	from	IN
cord-018103-czjjnlkf	161	5	Two	two	CD
cord-018103-czjjnlkf	161	6	Open	open	JJ
cord-018103-czjjnlkf	161	7	Reading	reading	NN
cord-018103-czjjnlkf	161	8	Frames	frame	NNS
cord-018103-czjjnlkf	161	9	:	:	:
cord-018103-czjjnlkf	161	10	Mechanism	mechanism	NN
cord-018103-czjjnlkf	161	11	of	of	IN
cord-018103-czjjnlkf	161	12	a	a	DT
cord-018103-czjjnlkf	161	13	50	50	CD
cord-018103-czjjnlkf	161	14	ntTranslational	ntTranslational	NNP
cord-018103-czjjnlkf	161	15	Bypass	Bypass	NNP
cord-018103-czjjnlkf	161	16	Recoding	Recoding	NNP
cord-018103-czjjnlkf	161	17	:	:	:
cord-018103-czjjnlkf	161	18	Translational	Translational	NNP
cord-018103-czjjnlkf	161	19	Bifurcations	Bifurcations	NNPS
cord-018103-czjjnlkf	161	20	in	in	IN
cord-018103-czjjnlkf	161	21	Gene	Gene	NNP
cord-018103-czjjnlkf	161	22	Expression	Expression	NNP
cord-018103-czjjnlkf	162	1	Predicting	predict	VBG
cord-018103-czjjnlkf	162	2	Genes	Genes	NNPS
cord-018103-czjjnlkf	162	3	Expressed	express	VBN
cord-018103-czjjnlkf	162	4	via	via	IN
cord-018103-czjjnlkf	162	5	-1	-1	CD
cord-018103-czjjnlkf	162	6	and	and	CC
cord-018103-czjjnlkf	162	7	+1	+1	NFP
cord-018103-czjjnlkf	162	8	Frameshifts	Frameshifts	NNP
cord-018103-czjjnlkf	162	9	Towards	towards	IN
cord-018103-czjjnlkf	162	10	a	a	DT
cord-018103-czjjnlkf	162	11	Computational	Computational	NNP
cord-018103-czjjnlkf	162	12	Model	Model	NNP
cord-018103-czjjnlkf	162	13	for	for	IN
cord-018103-czjjnlkf	162	14	-1	-1	NNP
cord-018103-czjjnlkf	163	1	Eukaryotic	Eukaryotic	NNP
cord-018103-czjjnlkf	163	2	Frameshifting	Frameshifting	NNP
cord-018103-czjjnlkf	163	3	Sites	Sites	NNPS
cord-018103-czjjnlkf	163	4	Identification	Identification	NNP
cord-018103-czjjnlkf	163	5	of	of	IN
cord-018103-czjjnlkf	163	6	Putative	Putative	NNP
cord-018103-czjjnlkf	163	7	Programmed	Programmed	NNP
cord-018103-czjjnlkf	163	8	-1	-1	.
cord-018103-czjjnlkf	164	1	Ribosomal	Ribosomal	NNP
cord-018103-czjjnlkf	164	2	Frameshift	Frameshift	NNP
cord-018103-czjjnlkf	164	3	Signals	Signals	NNPS
cord-018103-czjjnlkf	164	4	in	in	IN
cord-018103-czjjnlkf	164	5	Large	large	JJ
cord-018103-czjjnlkf	164	6	DNA	dna	NN
cord-018103-czjjnlkf	164	7	Databases	database	NNS
cord-018103-czjjnlkf	164	8	Programmed	program	VBN
cord-018103-czjjnlkf	164	9	-1	-1	.
cord-018103-czjjnlkf	165	1	Ribosomal	Ribosomal	NNP
cord-018103-czjjnlkf	165	2	Frameshifting	Frameshifting	NNP
cord-018103-czjjnlkf	165	3	in	in	IN
cord-018103-czjjnlkf	165	4	the	the	DT
cord-018103-czjjnlkf	165	5	SARS	SARS	NNP
cord-018103-czjjnlkf	165	6	Coronavirus	Coronavirus	NNP
cord-018103-czjjnlkf	165	7	Computational	Computational	NNP
cord-018103-czjjnlkf	165	8	Identification	Identification	NNP
cord-018103-czjjnlkf	165	9	of	of	IN
cord-018103-czjjnlkf	165	10	Putative	Putative	NNP
cord-018103-czjjnlkf	165	11	Programmed	program	VBN
cord-018103-czjjnlkf	165	12	Translational	Translational	NNP
cord-018103-czjjnlkf	165	13	Frameshift	Frameshift	NNP
cord-018103-czjjnlkf	165	14	Sites	Sites	NNPS
cord-018103-czjjnlkf	165	15	.	.	.
cord-018103-czjjnlkf	166	1	Bioinformatics	bioinformatic	NNS