id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-280564-kgoczioe	Conceição-Neto, Nádia	Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs	2017-09-08		.txt	text/plain	6204	339	54	title: Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs In the sample, we observed the presence of a small Torovirus contig of 256 bp, which was included in the phylogenetic tree (Fig. 1A , Torovirus/BEL/2015), showing very low similarity with the gene insertion found in the recombinant virus. The enterovirus genome region before the torovirus insertion (VP1-VP4, 2 A, 2B, and 2 C) showed its highest similarity on the amino-acid level (94.5%) with EVG/Porcine/USA/Texas1/ 2014 (Fig. 1C) . In addition to confirming the presence of the enterovirus-torovirus recombinant using Sanger sequencing, we used proteomics to infer whether the protein of the insertion could be found in the sample. Taking the metagenomics data, the Sanger sequence confirmation and the proteomics results all together we can conclude that this recombinant virus is present in the sample and that the inserted protein is being expressed.	./cache/cord-280564-kgoczioe.txt	./txt/cord-280564-kgoczioe.txt