id	sid	tid	token	lemma	pos
3197xk83g21	1	1	phosphoproteomics	phosphoproteomics	PROPN
3197xk83g21	1	2	is	be	AUX
3197xk83g21	1	3	a	a	DET
3197xk83g21	1	4	valuable	valuable	ADJ
3197xk83g21	1	5	tool	tool	NOUN
3197xk83g21	1	6	for	for	ADP
3197xk83g21	1	7	mapping	map	VERB
3197xk83g21	1	8	molecular	molecular	ADJ
3197xk83g21	1	9	signaling	signal	VERB
3197xk83g21	1	10	events	event	NOUN
3197xk83g21	1	11	and	and	CCONJ
3197xk83g21	1	12	dissecting	dissect	VERB
3197xk83g21	1	13	the	the	DET
3197xk83g21	1	14	interactions	interaction	NOUN
3197xk83g21	1	15	among	among	ADP
3197xk83g21	1	16	biological	biological	ADJ
3197xk83g21	1	17	pathways	pathway	NOUN
3197xk83g21	1	18	.	.	PUNCT
3197xk83g21	2	1	despite	despite	SCONJ
3197xk83g21	2	2	many	many	ADJ
3197xk83g21	2	3	advances	advance	NOUN
3197xk83g21	2	4	in	in	ADP
3197xk83g21	2	5	the	the	DET
3197xk83g21	2	6	sample	sample	NOUN
3197xk83g21	2	7	preparation	preparation	NOUN
3197xk83g21	2	8	methods	method	NOUN
3197xk83g21	2	9	and	and	CCONJ
3197xk83g21	2	10	instrument	instrument	NOUN
3197xk83g21	2	11	technologies	technology	NOUN
3197xk83g21	2	12	used	use	VERB
3197xk83g21	2	13	for	for	ADP
3197xk83g21	2	14	liquid	liquid	ADJ
3197xk83g21	2	15	chromatography	chromatography	NOUN
3197xk83g21	2	16	–	–	PUNCT
3197xk83g21	2	17	mass	mass	NOUN
3197xk83g21	2	18	spectrometry	spectrometry	NOUN
3197xk83g21	2	19	analyses	analysis	NOUN
3197xk83g21	2	20	of	of	ADP
3197xk83g21	2	21	protein	protein	NOUN
3197xk83g21	2	22	phosphorylation	phosphorylation	NOUN
3197xk83g21	2	23	,	,	PUNCT
3197xk83g21	2	24	there	there	PRON
3197xk83g21	2	25	is	be	VERB
3197xk83g21	2	26	still	still	ADV
3197xk83g21	2	27	a	a	DET
3197xk83g21	2	28	lack	lack	NOUN
3197xk83g21	2	29	of	of	ADP
3197xk83g21	2	30	consensus	consensus	NOUN
3197xk83g21	2	31	regarding	regard	VERB
3197xk83g21	2	32	best	good	ADJ
3197xk83g21	2	33	practices	practice	NOUN
3197xk83g21	2	34	in	in	ADP
3197xk83g21	2	35	this	this	DET
3197xk83g21	2	36	field	field	NOUN
3197xk83g21	2	37	.	.	PUNCT
3197xk83g21	3	1	in	in	ADP
3197xk83g21	3	2	particular	particular	ADJ
3197xk83g21	3	3	,	,	PUNCT
3197xk83g21	3	4	the	the	DET
3197xk83g21	3	5	chemistry	chemistry	NOUN
3197xk83g21	3	6	used	use	VERB
3197xk83g21	3	7	to	to	PART
3197xk83g21	3	8	enrich	enrich	VERB
3197xk83g21	3	9	phosphopeptides	phosphopeptide	NOUN
3197xk83g21	3	10	from	from	ADP
3197xk83g21	3	11	complex	complex	ADJ
3197xk83g21	3	12	cell	cell	NOUN
3197xk83g21	3	13	lysates	lysate	NOUN
3197xk83g21	3	14	is	be	AUX
3197xk83g21	3	15	especially	especially	ADV
3197xk83g21	3	16	critical	critical	ADJ
3197xk83g21	3	17	to	to	ADP
3197xk83g21	3	18	a	a	DET
3197xk83g21	3	19	comprehensive	comprehensive	ADJ
3197xk83g21	3	20	,	,	PUNCT
3197xk83g21	3	21	sensitive	sensitive	ADJ
3197xk83g21	3	22	,	,	PUNCT
3197xk83g21	3	23	and	and	CCONJ
3197xk83g21	3	24	accurate	accurate	ADJ
3197xk83g21	3	25	phosphoproteomics	phosphoproteomic	NOUN
3197xk83g21	3	26	experiment	experiment	NOUN
3197xk83g21	3	27	.	.	PUNCT
3197xk83g21	4	1	this	this	DET
3197xk83g21	4	2	dissertation	dissertation	NOUN
3197xk83g21	4	3	compared	compare	VERB
3197xk83g21	4	4	two	two	NUM
3197xk83g21	4	5	popular	popular	ADJ
3197xk83g21	4	6	phosphoproteomics	phosphoproteomic	NOUN
3197xk83g21	4	7	enrichment	enrichment	NOUN
3197xk83g21	4	8	methods	method	NOUN
3197xk83g21	4	9	,	,	PUNCT
3197xk83g21	4	10	immobilized	immobilize	VERB
3197xk83g21	4	11	metal	metal	NOUN
3197xk83g21	4	12	affinity	affinity	NOUN
3197xk83g21	4	13	chromatography	chromatography	NOUN
3197xk83g21	4	14	(	(	PUNCT
3197xk83g21	4	15	imac	imac	NOUN
3197xk83g21	4	16	)	)	PUNCT
3197xk83g21	4	17	and	and	CCONJ
3197xk83g21	4	18	titanium	titanium	NOUN
3197xk83g21	4	19	dioxide	dioxide	NOUN
3197xk83g21	4	20	(	(	PUNCT
3197xk83g21	4	21	tio2)-based	tio2)-base	VERB
3197xk83g21	4	22	metal	metal	NOUN
3197xk83g21	4	23	oxide	oxide	NOUN
3197xk83g21	4	24	affinity	affinity	NOUN
3197xk83g21	4	25	chromatography	chromatography	NOUN
3197xk83g21	4	26	(	(	PUNCT
3197xk83g21	4	27	moac	moac	PROPN
3197xk83g21	4	28	)	)	PUNCT
3197xk83g21	4	29	.	.	PUNCT
3197xk83g21	5	1	a	a	DET
3197xk83g21	5	2	multi	multi	ADJ
3197xk83g21	5	3	-	-	ADJ
3197xk83g21	5	4	step	step	NOUN
3197xk83g21	5	5	enrichment	enrichment	NOUN
3197xk83g21	5	6	protocol	protocol	NOUN
3197xk83g21	5	7	incorporating	incorporate	VERB
3197xk83g21	5	8	benchtop	benchtop	NOUN
3197xk83g21	5	9	high	high	ADJ
3197xk83g21	5	10	-	-	PUNCT
3197xk83g21	5	11	ph	ph	NOUN
3197xk83g21	5	12	reverse	reverse	ADJ
3197xk83g21	5	13	phase	phase	NOUN
3197xk83g21	5	14	fractionation	fractionation	NOUN
3197xk83g21	5	15	,	,	PUNCT
3197xk83g21	5	16	developed	develop	VERB
3197xk83g21	5	17	in	in	ADP
3197xk83g21	5	18	the	the	DET
3197xk83g21	5	19	hummon	hummon	PROPN
3197xk83g21	5	20	lab	lab	PROPN
3197xk83g21	5	21	,	,	PUNCT
3197xk83g21	5	22	minimizes	minimize	VERB
3197xk83g21	5	23	the	the	DET
3197xk83g21	5	24	amount	amount	NOUN
3197xk83g21	5	25	of	of	ADP
3197xk83g21	5	26	peptide	peptide	NOUN
3197xk83g21	5	27	starting	start	VERB
3197xk83g21	5	28	material	material	NOUN
3197xk83g21	5	29	required	require	VERB
3197xk83g21	5	30	for	for	ADP
3197xk83g21	5	31	maximal	maximal	ADJ
3197xk83g21	5	32	recovery	recovery	NOUN
3197xk83g21	5	33	from	from	ADP
3197xk83g21	5	34	both	both	DET
3197xk83g21	5	35	imac	imac	NOUN
3197xk83g21	5	36	and	and	CCONJ
3197xk83g21	5	37	tio2	tio2	PROPN
3197xk83g21	5	38	.	.	PUNCT
3197xk83g21	6	1	the	the	DET
3197xk83g21	6	2	two	two	NUM
3197xk83g21	6	3	chemistries	chemistry	NOUN
3197xk83g21	6	4	were	be	AUX
3197xk83g21	6	5	found	find	VERB
3197xk83g21	6	6	to	to	PART
3197xk83g21	6	7	enrich	enrich	VERB
3197xk83g21	6	8	phosphopeptides	phosphopeptide	NOUN
3197xk83g21	6	9	equally	equally	ADV
3197xk83g21	6	10	well	well	ADV
3197xk83g21	6	11	,	,	PUNCT
3197xk83g21	6	12	but	but	CCONJ
3197xk83g21	6	13	favor	favor	VERB
3197xk83g21	6	14	unique	unique	ADJ
3197xk83g21	6	15	subgroups	subgroup	NOUN
3197xk83g21	6	16	of	of	ADP
3197xk83g21	6	17	peptides	peptide	NOUN
3197xk83g21	6	18	.	.	PUNCT
3197xk83g21	7	1	tio2	tio2	NOUN
3197xk83g21	7	2	enriches	enrich	VERB
3197xk83g21	7	3	peptides	peptide	NOUN
3197xk83g21	7	4	that	that	PRON
3197xk83g21	7	5	are	be	AUX
3197xk83g21	7	6	slightly	slightly	ADV
3197xk83g21	7	7	shorter	short	ADJ
3197xk83g21	7	8	,	,	PUNCT
3197xk83g21	7	9	more	more	ADV
3197xk83g21	7	10	acidic	acidic	ADJ
3197xk83g21	7	11	,	,	PUNCT
3197xk83g21	7	12	and	and	CCONJ
3197xk83g21	7	13	more	more	ADJ
3197xk83g21	7	14	hydrophobic	hydrophobic	NOUN
3197xk83g21	7	15	than	than	ADP
3197xk83g21	7	16	imac	imac	NOUN
3197xk83g21	7	17	does	do	VERB
3197xk83g21	7	18	.	.	PUNCT
3197xk83g21	8	1	the	the	DET
3197xk83g21	8	2	improved	improved	ADJ
3197xk83g21	8	3	enrichment	enrichment	NOUN
3197xk83g21	8	4	protocol	protocol	NOUN
3197xk83g21	8	5	was	be	AUX
3197xk83g21	8	6	applied	apply	VERB
3197xk83g21	8	7	to	to	ADP
3197xk83g21	8	8	two	two	NUM
3197xk83g21	8	9	cancer	cancer	NOUN
3197xk83g21	8	10	-	-	PUNCT
3197xk83g21	8	11	relevant	relevant	ADJ
3197xk83g21	8	12	signaling	signal	VERB
3197xk83g21	8	13	networks	network	NOUN
3197xk83g21	8	14	.	.	PUNCT
3197xk83g21	9	1	the	the	DET
3197xk83g21	9	2	first	first	ADV
3197xk83g21	9	3	examined	examine	VERB
3197xk83g21	9	4	constitutive	constitutive	ADJ
3197xk83g21	9	5	phosphorylation	phosphorylation	NOUN
3197xk83g21	9	6	differences	difference	NOUN
3197xk83g21	9	7	between	between	ADP
3197xk83g21	9	8	a	a	DET
3197xk83g21	9	9	primary	primary	ADJ
3197xk83g21	9	10	tumor	tumor	NOUN
3197xk83g21	9	11	-	-	PUNCT
3197xk83g21	9	12	derived	derive	VERB
3197xk83g21	9	13	cell	cell	NOUN
3197xk83g21	9	14	line	line	NOUN
3197xk83g21	9	15	and	and	CCONJ
3197xk83g21	9	16	its	its	PRON
3197xk83g21	9	17	patient	patient	NOUN
3197xk83g21	9	18	-	-	PUNCT
3197xk83g21	9	19	matched	match	VERB
3197xk83g21	9	20	lymph	lymph	NOUN
3197xk83g21	9	21	node	node	NOUN
3197xk83g21	9	22	metastasis	metastasis	NOUN
3197xk83g21	9	23	cell	cell	NOUN
3197xk83g21	9	24	line	line	NOUN
3197xk83g21	9	25	.	.	PUNCT
3197xk83g21	10	1	this	this	DET
3197xk83g21	10	2	study	study	NOUN
3197xk83g21	10	3	of	of	ADP
3197xk83g21	10	4	the	the	DET
3197xk83g21	10	5	phosphoproteomes	phosphoproteome	NOUN
3197xk83g21	10	6	of	of	ADP
3197xk83g21	10	7	sw480	sw480	PROPN
3197xk83g21	10	8	and	and	CCONJ
3197xk83g21	10	9	sw620	sw620	PROPN
3197xk83g21	10	10	revealed	reveal	VERB
3197xk83g21	10	11	that	that	SCONJ
3197xk83g21	10	12	the	the	DET
3197xk83g21	10	13	lines	line	NOUN
3197xk83g21	10	14	differ	differ	VERB
3197xk83g21	10	15	significantly	significantly	ADV
3197xk83g21	10	16	in	in	ADP
3197xk83g21	10	17	their	their	PRON
3197xk83g21	10	18	regulation	regulation	NOUN
3197xk83g21	10	19	of	of	ADP
3197xk83g21	10	20	cellular	cellular	ADJ
3197xk83g21	10	21	adhesion	adhesion	NOUN
3197xk83g21	10	22	,	,	PUNCT
3197xk83g21	10	23	mitosis	mitosis	NOUN
3197xk83g21	10	24	,	,	PUNCT
3197xk83g21	10	25	and	and	CCONJ
3197xk83g21	10	26	mrna	mrna	PROPN
3197xk83g21	10	27	translation	translation	NOUN
3197xk83g21	10	28	.	.	PUNCT
3197xk83g21	11	1	in	in	ADP
3197xk83g21	11	2	the	the	DET
3197xk83g21	11	3	second	second	ADJ
3197xk83g21	11	4	study	study	NOUN
3197xk83g21	11	5	,	,	PUNCT
3197xk83g21	11	6	a	a	DET
3197xk83g21	11	7	single	single	ADJ
3197xk83g21	11	8	-	-	PUNCT
3197xk83g21	11	9	step	step	NOUN
3197xk83g21	11	10	tio2	tio2	NOUN
3197xk83g21	11	11	enrichment	enrichment	NOUN
3197xk83g21	11	12	allowed	allow	VERB
3197xk83g21	11	13	characterization	characterization	NOUN
3197xk83g21	11	14	of	of	ADP
3197xk83g21	11	15	signaling	signal	VERB
3197xk83g21	11	16	networks	network	NOUN
3197xk83g21	11	17	affected	affect	VERB
3197xk83g21	11	18	by	by	ADP
3197xk83g21	11	19	low	low	ADJ
3197xk83g21	11	20	dose	dose	NOUN
3197xk83g21	11	21	and	and	CCONJ
3197xk83g21	11	22	high	high	ADJ
3197xk83g21	11	23	dose	dose	NOUN
3197xk83g21	11	24	ionizing	ionize	VERB
3197xk83g21	11	25	radiation	radiation	NOUN
3197xk83g21	11	26	in	in	ADP
3197xk83g21	11	27	non	non	ADJ
3197xk83g21	11	28	-	-	ADJ
3197xk83g21	11	29	malignant	malignant	ADJ
3197xk83g21	11	30	breast	breast	NOUN
3197xk83g21	11	31	cell	cell	NOUN
3197xk83g21	11	32	line	line	NOUN
3197xk83g21	11	33	mcf10a	mcf10a	SPACE
3197xk83g21	11	34	.	.	PUNCT
3197xk83g21	12	1	this	this	PRON
3197xk83g21	12	2	revealed	reveal	VERB
3197xk83g21	12	3	that	that	SCONJ
3197xk83g21	12	4	atm	atm	PROPN
3197xk83g21	12	5	&	&	CCONJ
3197xk83g21	12	6	amp	amp	PROPN
3197xk83g21	12	7	;	;	PUNCT
3197xk83g21	12	8	dnapk	dnapk	PROPN
3197xk83g21	12	9	kinases	kinase	NOUN
3197xk83g21	12	10	are	be	AUX
3197xk83g21	12	11	induced	induce	VERB
3197xk83g21	12	12	by	by	ADP
3197xk83g21	12	13	10	10	NUM
3197xk83g21	12	14	gy	gy	NOUN
3197xk83g21	12	15	of	of	ADP
3197xk83g21	12	16	γ	γ	NOUN
3197xk83g21	12	17	-	-	PUNCT
3197xk83g21	12	18	rays	ray	NOUN
3197xk83g21	12	19	but	but	CCONJ
3197xk83g21	12	20	not	not	PART
3197xk83g21	12	21	0.05	0.05	NUM
3197xk83g21	12	22	gy	gy	NOUN
3197xk83g21	12	23	.	.	PUNCT
3197xk83g21	13	1	in	in	ADP
3197xk83g21	13	2	contrast	contrast	NOUN
3197xk83g21	13	3	,	,	PUNCT
3197xk83g21	13	4	the	the	DET
3197xk83g21	13	5	mapk	mapk	NOUN
3197xk83g21	13	6	signaling	signal	VERB
3197xk83g21	13	7	response	response	NOUN
3197xk83g21	13	8	to	to	ADP
3197xk83g21	13	9	ir	ir	VERB
3197xk83g21	13	10	was	be	AUX
3197xk83g21	13	11	dose	dose	NOUN
3197xk83g21	13	12	-	-	PUNCT
3197xk83g21	13	13	independent	independent	ADJ
3197xk83g21	13	14	.	.	PUNCT
3197xk83g21	14	1	taken	take	VERB
3197xk83g21	14	2	together	together	ADV
3197xk83g21	14	3	,	,	PUNCT
3197xk83g21	14	4	this	this	DET
3197xk83g21	14	5	work	work	NOUN
3197xk83g21	14	6	demonstrates	demonstrate	VERB
3197xk83g21	14	7	the	the	DET
3197xk83g21	14	8	utility	utility	NOUN
3197xk83g21	14	9	of	of	ADP
3197xk83g21	14	10	the	the	DET
3197xk83g21	14	11	imac	imac	NOUN
3197xk83g21	14	12	–	–	PUNCT
3197xk83g21	14	13	tio2	tio2	NOUN
3197xk83g21	14	14	–	–	PUNCT
3197xk83g21	14	15	high	high	ADJ
3197xk83g21	14	16	ph	ph	NOUN
3197xk83g21	14	17	reverse	reverse	ADJ
3197xk83g21	14	18	phase	phase	NOUN
3197xk83g21	14	19	workflow	workflow	NOUN
3197xk83g21	14	20	to	to	PART
3197xk83g21	14	21	maximize	maximize	VERB
3197xk83g21	14	22	phosphoproteome	phosphoproteome	ADJ
3197xk83g21	14	23	coverage	coverage	NOUN
3197xk83g21	14	24	and	and	CCONJ
3197xk83g21	14	25	to	to	PART
3197xk83g21	14	26	generate	generate	VERB
3197xk83g21	14	27	novel	novel	ADJ
3197xk83g21	14	28	biological	biological	ADJ
3197xk83g21	14	29	insights	insight	NOUN
3197xk83g21	14	30	.	.	PUNCT