id sid tid token lemma pos bz60cv45s1s 1 1 in in ADP bz60cv45s1s 1 2 early early ADJ bz60cv45s1s 1 3 stage stage NOUN bz60cv45s1s 1 4 xenopus xenopus PROPN bz60cv45s1s 1 5 oocytes oocyte NOUN bz60cv45s1s 1 6 , , PUNCT bz60cv45s1s 1 7 transcription transcription NOUN bz60cv45s1s 1 8 factor factor NOUN bz60cv45s1s 1 9 iiia iiia ADP bz60cv45s1s 1 10 ( ( PUNCT bz60cv45s1s 1 11 tfiiia tfiiia PROPN bz60cv45s1s 1 12 ) ) PUNCT bz60cv45s1s 1 13 and and CCONJ bz60cv45s1s 1 14 5s 5s PROPN bz60cv45s1s 1 15 rrna rrna PROPN bz60cv45s1s 1 16 form form NOUN bz60cv45s1s 1 17 a a DET bz60cv45s1s 1 18 7s 7s PROPN bz60cv45s1s 1 19 rnp rnp PROPN bz60cv45s1s 1 20 particle particle NOUN bz60cv45s1s 1 21 , , PUNCT bz60cv45s1s 1 22 which which PRON bz60cv45s1s 1 23 is be AUX bz60cv45s1s 1 24 used use VERB bz60cv45s1s 1 25 to to PART bz60cv45s1s 1 26 store store VERB bz60cv45s1s 1 27 the the DET bz60cv45s1s 1 28 rna rna NOUN bz60cv45s1s 1 29 in in ADP bz60cv45s1s 1 30 cytoplasm cytoplasm NOUN bz60cv45s1s 1 31 . . PUNCT bz60cv45s1s 2 1 starting start VERB bz60cv45s1s 2 2 at at ADP bz60cv45s1s 2 3 stage stage NOUN bz60cv45s1s 2 4 iii iii PROPN bz60cv45s1s 2 5 , , PUNCT bz60cv45s1s 2 6 tfiiia tfiiia PROPN bz60cv45s1s 2 7 is be AUX bz60cv45s1s 2 8 replaced replace VERB bz60cv45s1s 2 9 by by ADP bz60cv45s1s 2 10 ribosomal ribosomal NOUN bz60cv45s1s 2 11 protein protein NOUN bz60cv45s1s 2 12 l5 l5 PROPN bz60cv45s1s 2 13 on on ADP bz60cv45s1s 2 14 the the DET bz60cv45s1s 2 15 rna rna NOUN bz60cv45s1s 2 16 . . PUNCT bz60cv45s1s 3 1 despite despite SCONJ bz60cv45s1s 3 2 using use VERB bz60cv45s1s 3 3 different different ADJ bz60cv45s1s 3 4 recognition recognition NOUN bz60cv45s1s 3 5 elements element NOUN bz60cv45s1s 3 6 , , PUNCT bz60cv45s1s 3 7 association association NOUN bz60cv45s1s 3 8 of of ADP bz60cv45s1s 3 9 tfiiia tfiiia PROPN bz60cv45s1s 3 10 and and CCONJ bz60cv45s1s 3 11 l5 l5 ADJ bz60cv45s1s 3 12 to to ADP bz60cv45s1s 3 13 5s 5s PROPN bz60cv45s1s 3 14 rrna rrna PROPN bz60cv45s1s 3 15 is be AUX bz60cv45s1s 3 16 mutually mutually ADV bz60cv45s1s 3 17 exclusive exclusive ADJ bz60cv45s1s 3 18 due due ADP bz60cv45s1s 3 19 to to ADP bz60cv45s1s 3 20 the the DET bz60cv45s1s 3 21 overlapping overlap VERB bz60cv45s1s 3 22 binding bind VERB bz60cv45s1s 3 23 sites site NOUN bz60cv45s1s 3 24 . . PUNCT bz60cv45s1s 4 1 it it PRON bz60cv45s1s 4 2 is be AUX bz60cv45s1s 4 3 of of ADP bz60cv45s1s 4 4 importance importance NOUN bz60cv45s1s 4 5 to to PART bz60cv45s1s 4 6 determine determine VERB bz60cv45s1s 4 7 the the DET bz60cv45s1s 4 8 topology topology NOUN bz60cv45s1s 4 9 of of ADP bz60cv45s1s 4 10 tfiiia tfiiia PROPN bz60cv45s1s 4 11 and and CCONJ bz60cv45s1s 4 12 l5 l5 PROPN bz60cv45s1s 4 13 on on ADP bz60cv45s1s 4 14 5s 5s PROPN bz60cv45s1s 4 15 rrna rrna PROPN bz60cv45s1s 4 16 in in ADP bz60cv45s1s 4 17 order order NOUN bz60cv45s1s 4 18 to to PART bz60cv45s1s 4 19 understand understand VERB bz60cv45s1s 4 20 the the DET bz60cv45s1s 4 21 mechanism mechanism NOUN bz60cv45s1s 4 22 behind behind ADP bz60cv45s1s 4 23 the the DET bz60cv45s1s 4 24 exchange exchange NOUN bz60cv45s1s 4 25 of of ADP bz60cv45s1s 4 26 5s 5s PROPN bz60cv45s1s 4 27 rrna rrna PROPN bz60cv45s1s 4 28 between between ADP bz60cv45s1s 4 29 these these DET bz60cv45s1s 4 30 two two NUM bz60cv45s1s 4 31 proteins protein NOUN bz60cv45s1s 4 32 . . PUNCT bz60cv45s1s 5 1 to to PART bz60cv45s1s 5 2 pinpoint pinpoint VERB bz60cv45s1s 5 3 the the DET bz60cv45s1s 5 4 chemical chemical ADJ bz60cv45s1s 5 5 groups group NOUN bz60cv45s1s 5 6 on on ADP bz60cv45s1s 5 7 5s 5s PROPN bz60cv45s1s 5 8 rrna rrna PROPN bz60cv45s1s 5 9 which which PRON bz60cv45s1s 5 10 are be AUX bz60cv45s1s 5 11 important important ADJ bz60cv45s1s 5 12 for for SCONJ bz60cv45s1s 5 13 the the DET bz60cv45s1s 5 14 binding binding NOUN bz60cv45s1s 5 15 of of ADP bz60cv45s1s 5 16 tfiiia tfiiia NOUN bz60cv45s1s 5 17 and and CCONJ bz60cv45s1s 5 18 l5 l5 PROPN bz60cv45s1s 5 19 , , PUNCT bz60cv45s1s 5 20 nucleotide nucleotide ADJ bz60cv45s1s 5 21 analog analog NOUN bz60cv45s1s 5 22 interference interference NOUN bz60cv45s1s 5 23 mapping mapping NOUN bz60cv45s1s 5 24 ( ( PUNCT bz60cv45s1s 5 25 naim naim NOUN bz60cv45s1s 5 26 ) ) PUNCT bz60cv45s1s 5 27 was be AUX bz60cv45s1s 5 28 used use VERB bz60cv45s1s 5 29 . . PUNCT bz60cv45s1s 6 1 a a DET bz60cv45s1s 6 2 variety variety NOUN bz60cv45s1s 6 3 of of ADP bz60cv45s1s 6 4 adenosine adenosine NOUN bz60cv45s1s 6 5 and and CCONJ bz60cv45s1s 6 6 guanosine guanosine NOUN bz60cv45s1s 6 7 analogs analog NOUN bz60cv45s1s 6 8 were be AUX bz60cv45s1s 6 9 chosen choose VERB bz60cv45s1s 6 10 , , PUNCT bz60cv45s1s 6 11 which which PRON bz60cv45s1s 6 12 contain contain VERB bz60cv45s1s 6 13 modifications modification NOUN bz60cv45s1s 6 14 to to ADP bz60cv45s1s 6 15 the the DET bz60cv45s1s 6 16 base base NOUN bz60cv45s1s 6 17 , , PUNCT bz60cv45s1s 6 18 ribose ribose NOUN bz60cv45s1s 6 19 or or CCONJ bz60cv45s1s 6 20 phosphate phosphate NOUN bz60cv45s1s 6 21 moieties moiety NOUN bz60cv45s1s 6 22 . . PUNCT bz60cv45s1s 7 1 tfiia tfiia ADJ bz60cv45s1s 7 2 interference interference NOUN bz60cv45s1s 7 3 sites site NOUN bz60cv45s1s 7 4 are be AUX bz60cv45s1s 7 5 clustered cluster VERB bz60cv45s1s 7 6 in in ADP bz60cv45s1s 7 7 loop loop NOUN bz60cv45s1s 7 8 a a PRON bz60cv45s1s 7 9 and and CCONJ bz60cv45s1s 7 10 loop loop NOUN bz60cv45s1s 7 11 e e NOUN bz60cv45s1s 7 12 , , PUNCT bz60cv45s1s 7 13 which which PRON bz60cv45s1s 7 14 is be AUX bz60cv45s1s 7 15 consistent consistent ADJ bz60cv45s1s 7 16 with with ADP bz60cv45s1s 7 17 a a DET bz60cv45s1s 7 18 recent recent ADJ bz60cv45s1s 7 19 crystal crystal NOUN bz60cv45s1s 7 20 structure structure NOUN bz60cv45s1s 7 21 . . PUNCT bz60cv45s1s 8 1 however however ADV bz60cv45s1s 8 2 , , PUNCT bz60cv45s1s 8 3 some some DET bz60cv45s1s 8 4 features feature NOUN bz60cv45s1s 8 5 have have AUX bz60cv45s1s 8 6 been be AUX bz60cv45s1s 8 7 identified identify VERB bz60cv45s1s 8 8 which which PRON bz60cv45s1s 8 9 are be AUX bz60cv45s1s 8 10 not not PART bz60cv45s1s 8 11 apparent apparent ADJ bz60cv45s1s 8 12 in in ADP bz60cv45s1s 8 13 that that DET bz60cv45s1s 8 14 structure structure NOUN bz60cv45s1s 8 15 . . PUNCT bz60cv45s1s 9 1 for for ADP bz60cv45s1s 9 2 example example NOUN bz60cv45s1s 9 3 , , PUNCT bz60cv45s1s 9 4 strong strong ADJ bz60cv45s1s 9 5 interference interference NOUN bz60cv45s1s 9 6 has have AUX bz60cv45s1s 9 7 been be AUX bz60cv45s1s 9 8 observed observe VERB bz60cv45s1s 9 9 with with ADP bz60cv45s1s 9 10 phosphorothioate phosphorothioate NOUN bz60cv45s1s 9 11 adenosine adenosine NOUN bz60cv45s1s 9 12 at at ADP bz60cv45s1s 9 13 position position NOUN bz60cv45s1s 9 14 13 13 NUM bz60cv45s1s 9 15 , , PUNCT bz60cv45s1s 9 16 which which PRON bz60cv45s1s 9 17 can can AUX bz60cv45s1s 9 18 not not PART bz60cv45s1s 9 19 be be AUX bz60cv45s1s 9 20 accounted account VERB bz60cv45s1s 9 21 for for ADP bz60cv45s1s 9 22 by by ADP bz60cv45s1s 9 23 the the DET bz60cv45s1s 9 24 crystal crystal NOUN bz60cv45s1s 9 25 structure structure NOUN bz60cv45s1s 9 26 . . PUNCT bz60cv45s1s 10 1 removal removal NOUN bz60cv45s1s 10 2 of of ADP bz60cv45s1s 10 3 the the DET bz60cv45s1s 10 4 2åáå 2åáå NUM bz60cv45s1s 10 5 _ _ PROPN bz60cv45s1s 10 6 hydroxyl hydroxyl PROPN bz60cv45s1s 10 7 group group PROPN bz60cv45s1s 10 8 at at ADP bz60cv45s1s 10 9 a11 a11 NOUN bz60cv45s1s 10 10 causes cause VERB bz60cv45s1s 10 11 pronounced pronounce VERB bz60cv45s1s 10 12 interference interference NOUN bz60cv45s1s 10 13 , , PUNCT bz60cv45s1s 10 14 which which PRON bz60cv45s1s 10 15 can can AUX bz60cv45s1s 10 16 be be AUX bz60cv45s1s 10 17 reversed reverse VERB bz60cv45s1s 10 18 by by ADP bz60cv45s1s 10 19 replacement replacement NOUN bz60cv45s1s 10 20 with with ADP bz60cv45s1s 10 21 fluorine fluorine NOUN bz60cv45s1s 10 22 ; ; PUNCT bz60cv45s1s 10 23 yet yet CCONJ bz60cv45s1s 10 24 there there PRON bz60cv45s1s 10 25 is be VERB bz60cv45s1s 10 26 no no DET bz60cv45s1s 10 27 hydrogen hydrogen NOUN bz60cv45s1s 10 28 bond bond NOUN bz60cv45s1s 10 29 to to ADP bz60cv45s1s 10 30 this this DET bz60cv45s1s 10 31 moiety moiety NOUN bz60cv45s1s 10 32 in in ADP bz60cv45s1s 10 33 the the DET bz60cv45s1s 10 34 crystal crystal NOUN bz60cv45s1s 10 35 structure structure NOUN bz60cv45s1s 10 36 . . PUNCT bz60cv45s1s 11 1 interference interference NOUN bz60cv45s1s 11 2 sites site NOUN bz60cv45s1s 11 3 for for ADP bz60cv45s1s 11 4 l5 l5 PROPN bz60cv45s1s 11 5 are be AUX bz60cv45s1s 11 6 located locate VERB bz60cv45s1s 11 7 in in ADP bz60cv45s1s 11 8 helix helix NOUN bz60cv45s1s 11 9 iii iii NOUN bz60cv45s1s 11 10 and and CCONJ bz60cv45s1s 11 11 loop loop PROPN bz60cv45s1s 11 12 c. c. PROPN bz60cv45s1s 11 13 the the DET bz60cv45s1s 11 14 interference interference NOUN bz60cv45s1s 11 15 by by ADP bz60cv45s1s 11 16 må£`aå£s må£`aå£s PROPN bz60cv45s1s 11 17 and and CCONJ bz60cv45s1s 11 18 7daå£s 7daå£s NUM bz60cv45s1s 11 19 analogs analog NOUN bz60cv45s1s 11 20 at at ADP bz60cv45s1s 11 21 a50 a50 PROPN bz60cv45s1s 11 22 and and CCONJ bz60cv45s1s 11 23 the the DET bz60cv45s1s 11 24 dapå£s dapå£s PROPN bz60cv45s1s 11 25 analog analog NOUN bz60cv45s1s 11 26 at at ADP bz60cv45s1s 11 27 position position NOUN bz60cv45s1s 11 28 a49 a49 PROPN bz60cv45s1s 11 29 indicate indicate VERB bz60cv45s1s 11 30 that that SCONJ bz60cv45s1s 11 31 the the DET bz60cv45s1s 11 32 two two NUM bz60cv45s1s 11 33 unpaired unpaired ADJ bz60cv45s1s 11 34 adenosines adenosine NOUN bz60cv45s1s 11 35 in in ADP bz60cv45s1s 11 36 helix helix NOUN bz60cv45s1s 11 37 iii iii NUM bz60cv45s1s 11 38 form form NOUN bz60cv45s1s 11 39 an an DET bz60cv45s1s 11 40 a a DET bz60cv45s1s 11 41 - - PUNCT bz60cv45s1s 11 42 platform platform NOUN bz60cv45s1s 11 43 upon upon SCONJ bz60cv45s1s 11 44 binding bind VERB bz60cv45s1s 11 45 l5 l5 PROPN bz60cv45s1s 11 46 . . PUNCT bz60cv45s1s 12 1 the the DET bz60cv45s1s 12 2 må£`aå£s må£`aå£s PROPN bz60cv45s1s 12 3 analog analog NOUN bz60cv45s1s 12 4 at at ADP bz60cv45s1s 12 5 a11 a11 NOUN bz60cv45s1s 12 6 enhances enhance VERB bz60cv45s1s 12 7 the the DET bz60cv45s1s 12 8 binding binding NOUN bz60cv45s1s 12 9 of of ADP bz60cv45s1s 12 10 l5 l5 PROPN bz60cv45s1s 12 11 , , PUNCT bz60cv45s1s 12 12 which which PRON bz60cv45s1s 12 13 indicates indicate VERB bz60cv45s1s 12 14 that that SCONJ bz60cv45s1s 12 15 the the DET bz60cv45s1s 12 16 protein protein NOUN bz60cv45s1s 12 17 likely likely ADV bz60cv45s1s 12 18 binds bind VERB bz60cv45s1s 12 19 to to PART bz60cv45s1s 12 20 loop loop VERB bz60cv45s1s 12 21 a a PRON bz60cv45s1s 12 22 by by ADP bz60cv45s1s 12 23 stacking stack VERB bz60cv45s1s 12 24 on on ADP bz60cv45s1s 12 25 a11 a11 PROPN bz60cv45s1s 12 26 . . PUNCT bz60cv45s1s 13 1 interestingly interestingly ADV bz60cv45s1s 13 2 , , PUNCT bz60cv45s1s 13 3 tfiiia tfiiia PROPN bz60cv45s1s 13 4 also also ADV bz60cv45s1s 13 5 binds bind VERB bz60cv45s1s 13 6 to to PART bz60cv45s1s 13 7 loop loop VERB bz60cv45s1s 13 8 a a PRON bz60cv45s1s 13 9 through through ADP bz60cv45s1s 13 10 a a DET bz60cv45s1s 13 11 stacking stack VERB bz60cv45s1s 13 12 interaction interaction NOUN bz60cv45s1s 13 13 between between ADP bz60cv45s1s 13 14 trp trp NOUN bz60cv45s1s 13 15 177 177 NUM bz60cv45s1s 13 16 and and CCONJ bz60cv45s1s 13 17 a11 a11 NOUN bz60cv45s1s 13 18 . . PUNCT bz60cv45s1s 14 1 this this PRON bz60cv45s1s 14 2 is be AUX bz60cv45s1s 14 3 the the DET bz60cv45s1s 14 4 only only ADJ bz60cv45s1s 14 5 example example NOUN bz60cv45s1s 14 6 where where SCONJ bz60cv45s1s 14 7 these these DET bz60cv45s1s 14 8 two two NUM bz60cv45s1s 14 9 structurally structurally ADV bz60cv45s1s 14 10 distinct distinct ADJ bz60cv45s1s 14 11 proteins protein NOUN bz60cv45s1s 14 12 make make VERB bz60cv45s1s 14 13 similar similar ADJ bz60cv45s1s 14 14 contacts contact NOUN bz60cv45s1s 14 15 to to ADP bz60cv45s1s 14 16 the the DET bz60cv45s1s 14 17 5s 5s PROPN bz60cv45s1s 14 18 rrna rrna PROPN bz60cv45s1s 14 19 . . PUNCT bz60cv45s1s 15 1 a a DET bz60cv45s1s 15 2 30 30 NUM bz60cv45s1s 15 3 kda kda PROPN bz60cv45s1s 15 4 tfiiia tfiiia PROPN bz60cv45s1s 15 5 fragment fragment NOUN bz60cv45s1s 15 6 is be AUX bz60cv45s1s 15 7 observed observe VERB bz60cv45s1s 15 8 in in ADP bz60cv45s1s 15 9 the the DET bz60cv45s1s 15 10 late late ADJ bz60cv45s1s 15 11 stage stage NOUN bz60cv45s1s 15 12 oocytes oocyte NOUN bz60cv45s1s 15 13 when when SCONJ bz60cv45s1s 15 14 the the DET bz60cv45s1s 15 15 tfiiia tfiiia ADJ bz60cv45s1s 15 16 - - PUNCT bz60cv45s1s 15 17 l5 l5 PROPN bz60cv45s1s 15 18 exchange exchange NOUN bz60cv45s1s 15 19 reaction reaction NOUN bz60cv45s1s 15 20 occurs occur VERB bz60cv45s1s 15 21 . . PUNCT bz60cv45s1s 16 1 an an DET bz60cv45s1s 16 2 in in ADP bz60cv45s1s 16 3 vitro vitro X bz60cv45s1s 16 4 exchange exchange NOUN bz60cv45s1s 16 5 experiment experiment NOUN bz60cv45s1s 16 6 shows show VERB bz60cv45s1s 16 7 that that SCONJ bz60cv45s1s 16 8 a a DET bz60cv45s1s 16 9 30 30 NUM bz60cv45s1s 16 10 kda kda NOUN bz60cv45s1s 16 11 peptide peptide NOUN bz60cv45s1s 16 12 corresponding correspond VERB bz60cv45s1s 16 13 to to ADP bz60cv45s1s 16 14 the the DET bz60cv45s1s 16 15 n n ADJ bz60cv45s1s 16 16 - - PUNCT bz60cv45s1s 16 17 terminal terminal ADJ bz60cv45s1s 16 18 portion portion NOUN bz60cv45s1s 16 19 of of ADP bz60cv45s1s 16 20 tfiiia tfiiia PROPN bz60cv45s1s 16 21 can can AUX bz60cv45s1s 16 22 be be AUX bz60cv45s1s 16 23 replaced replace VERB bz60cv45s1s 16 24 by by ADP bz60cv45s1s 16 25 l5 l5 PROPN bz60cv45s1s 16 26 on on ADP bz60cv45s1s 16 27 5s 5s PROPN bz60cv45s1s 16 28 rrna rrna PROPN bz60cv45s1s 16 29 , , PUNCT bz60cv45s1s 16 30 while while SCONJ bz60cv45s1s 16 31 the the DET bz60cv45s1s 16 32 full full ADJ bz60cv45s1s 16 33 - - PUNCT bz60cv45s1s 16 34 length length NOUN bz60cv45s1s 16 35 tfiiia tfiiia NOUN bz60cv45s1s 16 36 can can AUX bz60cv45s1s 16 37 not not PART bz60cv45s1s 16 38 be be AUX bz60cv45s1s 16 39 replaced replace VERB bz60cv45s1s 16 40 , , PUNCT bz60cv45s1s 16 41 indicating indicate VERB bz60cv45s1s 16 42 that that SCONJ bz60cv45s1s 16 43 programmed programmed ADJ bz60cv45s1s 16 44 cleavage cleavage NOUN bz60cv45s1s 16 45 of of ADP bz60cv45s1s 16 46 tfiiia tfiiia NOUN bz60cv45s1s 16 47 at at ADP bz60cv45s1s 16 48 the the DET bz60cv45s1s 16 49 c c NOUN bz60cv45s1s 16 50 - - PUNCT bz60cv45s1s 16 51 terminal terminal ADJ bz60cv45s1s 16 52 end end NOUN bz60cv45s1s 16 53 controls control VERB bz60cv45s1s 16 54 the the DET bz60cv45s1s 16 55 exchange exchange NOUN bz60cv45s1s 16 56 reaction reaction NOUN bz60cv45s1s 16 57 . . PUNCT