id	sid	tid	token	lemma	pos
cc08hd8002x	1	1	the	the	DET
cc08hd8002x	1	2	number	number	NOUN
cc08hd8002x	1	3	of	of	ADP
cc08hd8002x	1	4	proteins	protein	NOUN
cc08hd8002x	1	5	with	with	ADP
cc08hd8002x	1	6	known	know	VERB
cc08hd8002x	1	7	function	function	NOUN
cc08hd8002x	1	8	is	be	AUX
cc08hd8002x	1	9	greatly	greatly	ADV
cc08hd8002x	1	10	dwarfed	dwarfed	ADJ
cc08hd8002x	1	11	by	by	ADP
cc08hd8002x	1	12	the	the	DET
cc08hd8002x	1	13	number	number	NOUN
cc08hd8002x	1	14	of	of	ADP
cc08hd8002x	1	15	known	know	VERB
cc08hd8002x	1	16	proteins	protein	NOUN
cc08hd8002x	1	17	.	.	PUNCT
cc08hd8002x	2	1	wet	wet	ADJ
cc08hd8002x	2	2	-	-	PUNCT
cc08hd8002x	2	3	lab	lab	NOUN
cc08hd8002x	2	4	experiments	experiment	NOUN
cc08hd8002x	2	5	to	to	PART
cc08hd8002x	2	6	determine	determine	VERB
cc08hd8002x	2	7	protein	protein	NOUN
cc08hd8002x	2	8	function	function	NOUN
cc08hd8002x	2	9	are	be	AUX
cc08hd8002x	2	10	costly	costly	ADJ
cc08hd8002x	2	11	in	in	ADP
cc08hd8002x	2	12	both	both	DET
cc08hd8002x	2	13	time	time	NOUN
cc08hd8002x	2	14	and	and	CCONJ
cc08hd8002x	2	15	resources	resource	NOUN
cc08hd8002x	2	16	.	.	PUNCT
cc08hd8002x	3	1	thus	thus	ADV
cc08hd8002x	3	2	,	,	PUNCT
cc08hd8002x	3	3	there	there	PRON
cc08hd8002x	3	4	is	be	VERB
cc08hd8002x	3	5	a	a	DET
cc08hd8002x	3	6	need	need	NOUN
cc08hd8002x	3	7	to	to	PART
cc08hd8002x	3	8	computationally	computationally	ADV
cc08hd8002x	3	9	determine	determine	VERB
cc08hd8002x	3	10	protein	protein	NOUN
cc08hd8002x	3	11	functions	function	NOUN
cc08hd8002x	3	12	.	.	PUNCT
cc08hd8002x	4	1	as	as	SCONJ
cc08hd8002x	4	2	protein	protein	NOUN
cc08hd8002x	4	3	function	function	NOUN
cc08hd8002x	4	4	is	be	AUX
cc08hd8002x	4	5	closely	closely	ADV
cc08hd8002x	4	6	related	related	ADJ
cc08hd8002x	4	7	to	to	ADP
cc08hd8002x	4	8	protein	protein	NOUN
cc08hd8002x	4	9	structure	structure	NOUN
cc08hd8002x	4	10	,	,	PUNCT
cc08hd8002x	4	11	in	in	ADP
cc08hd8002x	4	12	this	this	DET
cc08hd8002x	4	13	thesis	thesis	NOUN
cc08hd8002x	4	14	we	we	PRON
cc08hd8002x	4	15	describe	describe	VERB
cc08hd8002x	4	16	two	two	NUM
cc08hd8002x	4	17	novel	novel	NOUN
cc08hd8002x	4	18	,	,	PUNCT
cc08hd8002x	4	19	network	network	NOUN
cc08hd8002x	4	20	-	-	PUNCT
cc08hd8002x	4	21	based	base	VERB
cc08hd8002x	4	22	approaches	approach	NOUN
cc08hd8002x	4	23	for	for	ADP
cc08hd8002x	4	24	capturing	capturing	NOUN
cc08hd8002x	4	25	,	,	PUNCT
cc08hd8002x	4	26	describing	describe	VERB
cc08hd8002x	4	27	,	,	PUNCT
cc08hd8002x	4	28	and	and	CCONJ
cc08hd8002x	4	29	understanding	understand	VERB
cc08hd8002x	4	30	protein	protein	NOUN
cc08hd8002x	4	31	structure	structure	NOUN
cc08hd8002x	4	32	.	.	PUNCT
cc08hd8002x	5	1	the	the	DET
cc08hd8002x	5	2	first	first	ADJ
cc08hd8002x	5	3	deals	deal	NOUN
cc08hd8002x	5	4	with	with	ADP
cc08hd8002x	5	5	the	the	DET
cc08hd8002x	5	6	problem	problem	NOUN
cc08hd8002x	5	7	of	of	ADP
cc08hd8002x	5	8	protein	protein	NOUN
cc08hd8002x	5	9	structural	structural	ADJ
cc08hd8002x	5	10	classification	classification	NOUN
cc08hd8002x	5	11	.	.	PUNCT
cc08hd8002x	6	1	recently	recently	ADV
cc08hd8002x	6	2	,	,	PUNCT
cc08hd8002x	6	3	approaches	approach	VERB
cc08hd8002x	6	4	that	that	PRON
cc08hd8002x	6	5	model	model	VERB
cc08hd8002x	6	6	protein	protein	NOUN
cc08hd8002x	6	7	3d	3d	NOUN
cc08hd8002x	6	8	structures	structure	NOUN
cc08hd8002x	6	9	as	as	SCONJ
cc08hd8002x	6	10	networks	network	NOUN
cc08hd8002x	6	11	have	have	AUX
cc08hd8002x	6	12	been	be	AUX
cc08hd8002x	6	13	positioned	position	VERB
cc08hd8002x	6	14	as	as	ADP
cc08hd8002x	6	15	a	a	DET
cc08hd8002x	6	16	state	state	NOUN
cc08hd8002x	6	17	-	-	PUNCT
cc08hd8002x	6	18	of	of	ADP
cc08hd8002x	6	19	-	-	PUNCT
cc08hd8002x	6	20	the	the	DET
cc08hd8002x	6	21	-	-	PUNCT
cc08hd8002x	6	22	art	art	NOUN
cc08hd8002x	6	23	solution	solution	NOUN
cc08hd8002x	6	24	for	for	ADP
cc08hd8002x	6	25	solving	solve	VERB
cc08hd8002x	6	26	this	this	DET
cc08hd8002x	6	27	problem	problem	NOUN
cc08hd8002x	6	28	.	.	PUNCT
cc08hd8002x	7	1	however	however	ADV
cc08hd8002x	7	2	,	,	PUNCT
cc08hd8002x	7	3	all	all	DET
cc08hd8002x	7	4	existing	exist	VERB
cc08hd8002x	7	5	network	network	NOUN
cc08hd8002x	7	6	-	-	PUNCT
cc08hd8002x	7	7	based	base	VERB
cc08hd8002x	7	8	approaches	approach	NOUN
cc08hd8002x	7	9	approaches	approach	NOUN
cc08hd8002x	7	10	used	use	VERB
cc08hd8002x	7	11	a	a	DET
cc08hd8002x	7	12	static	static	ADJ
cc08hd8002x	7	13	network	network	NOUN
cc08hd8002x	7	14	to	to	PART
cc08hd8002x	7	15	capture	capture	VERB
cc08hd8002x	7	16	the	the	DET
cc08hd8002x	7	17	final	final	ADJ
cc08hd8002x	7	18	,	,	PUNCT
cc08hd8002x	7	19	native	native	ADJ
cc08hd8002x	7	20	structure	structure	NOUN
cc08hd8002x	7	21	of	of	ADP
cc08hd8002x	7	22	a	a	DET
cc08hd8002x	7	23	protein	protein	NOUN
cc08hd8002x	7	24	for	for	ADP
cc08hd8002x	7	25	classification	classification	NOUN
cc08hd8002x	7	26	.	.	PUNCT
cc08hd8002x	8	1	instead	instead	ADV
cc08hd8002x	8	2	,	,	PUNCT
cc08hd8002x	8	3	our	our	PRON
cc08hd8002x	8	4	new	new	ADJ
cc08hd8002x	8	5	approach	approach	NOUN
cc08hd8002x	8	6	uses	use	VERB
cc08hd8002x	8	7	a	a	DET
cc08hd8002x	8	8	dynamic	dynamic	ADJ
cc08hd8002x	8	9	network	network	NOUN
cc08hd8002x	8	10	to	to	PART
cc08hd8002x	8	11	capture	capture	VERB
cc08hd8002x	8	12	information	information	NOUN
cc08hd8002x	8	13	about	about	ADP
cc08hd8002x	8	14	the	the	DET
cc08hd8002x	8	15	emerging	emerge	VERB
cc08hd8002x	8	16	(	(	PUNCT
cc08hd8002x	8	17	sub)structure	sub)structure	NOUN
cc08hd8002x	8	18	of	of	ADP
cc08hd8002x	8	19	a	a	DET
cc08hd8002x	8	20	protein	protein	NOUN
cc08hd8002x	8	21	for	for	ADP
cc08hd8002x	8	22	classification	classification	NOUN
cc08hd8002x	8	23	.	.	PUNCT
cc08hd8002x	9	1	we	we	PRON
cc08hd8002x	9	2	find	find	VERB
cc08hd8002x	9	3	that	that	SCONJ
cc08hd8002x	9	4	our	our	PRON
cc08hd8002x	9	5	dynamic	dynamic	ADJ
cc08hd8002x	9	6	network	network	NOUN
cc08hd8002x	9	7	-	-	PUNCT
cc08hd8002x	9	8	based	base	VERB
cc08hd8002x	9	9	approach	approach	NOUN
cc08hd8002x	9	10	greatly	greatly	ADV
cc08hd8002x	9	11	improves	improve	VERB
cc08hd8002x	9	12	on	on	ADP
cc08hd8002x	9	13	the	the	DET
cc08hd8002x	9	14	previous	previous	ADJ
cc08hd8002x	9	15	,	,	PUNCT
cc08hd8002x	9	16	static	static	ADJ
cc08hd8002x	9	17	network	network	NOUN
cc08hd8002x	9	18	-	-	PUNCT
cc08hd8002x	9	19	based	base	VERB
cc08hd8002x	9	20	approaches	approach	NOUN
cc08hd8002x	9	21	.	.	PUNCT
cc08hd8002x	10	1	this	this	PRON
cc08hd8002x	10	2	opens	open	VERB
cc08hd8002x	10	3	up	up	ADP
cc08hd8002x	10	4	future	future	ADJ
cc08hd8002x	10	5	possibilities	possibility	NOUN
cc08hd8002x	10	6	to	to	PART
cc08hd8002x	10	7	explore	explore	VERB
cc08hd8002x	10	8	protein	protein	NOUN
cc08hd8002x	10	9	folding	folding	NOUN
cc08hd8002x	10	10	-	-	PUNCT
cc08hd8002x	10	11	related	relate	VERB
cc08hd8002x	10	12	research	research	NOUN
cc08hd8002x	10	13	questions	question	NOUN
cc08hd8002x	10	14	using	use	VERB
cc08hd8002x	10	15	dynamic	dynamic	NOUN
cc08hd8002x	10	16	,	,	PUNCT
cc08hd8002x	10	17	rather	rather	ADV
cc08hd8002x	10	18	than	than	ADP
cc08hd8002x	10	19	static	static	ADJ
cc08hd8002x	10	20	,	,	PUNCT
cc08hd8002x	10	21	psns	psns	NOUN
cc08hd8002x	10	22	.	.	PUNCT
cc08hd8002x	11	1	the	the	DET
cc08hd8002x	11	2	second	second	ADJ
cc08hd8002x	11	3	approach	approach	NOUN
cc08hd8002x	11	4	,	,	PUNCT
cc08hd8002x	11	5	also	also	ADV
cc08hd8002x	11	6	modeling	model	VERB
cc08hd8002x	11	7	protein	protein	NOUN
cc08hd8002x	11	8	3d	3d	NOUN
cc08hd8002x	11	9	structures	structure	NOUN
cc08hd8002x	11	10	as	as	ADP
cc08hd8002x	11	11	networks	network	NOUN
cc08hd8002x	11	12	,	,	PUNCT
cc08hd8002x	11	13	takes	take	VERB
cc08hd8002x	11	14	beginning	begin	VERB
cc08hd8002x	11	15	steps	step	NOUN
cc08hd8002x	11	16	to	to	PART
cc08hd8002x	11	17	understand	understand	VERB
cc08hd8002x	11	18	the	the	DET
cc08hd8002x	11	19	relatively	relatively	ADV
cc08hd8002x	11	20	unknown	unknown	ADJ
cc08hd8002x	11	21	role	role	NOUN
cc08hd8002x	11	22	of	of	ADP
cc08hd8002x	11	23	synonymous	synonymous	ADJ
cc08hd8002x	11	24	codons	codon	NOUN
cc08hd8002x	11	25	in	in	ADP
cc08hd8002x	11	26	the	the	DET
cc08hd8002x	11	27	protein	protein	NOUN
cc08hd8002x	11	28	folding	fold	VERB
cc08hd8002x	11	29	process	process	NOUN
cc08hd8002x	11	30	.	.	PUNCT
cc08hd8002x	12	1	most	most	ADJ
cc08hd8002x	12	2	amino	amino	ADJ
cc08hd8002x	12	3	acids	acid	NOUN
cc08hd8002x	12	4	are	be	AUX
cc08hd8002x	12	5	encoded	encode	VERB
cc08hd8002x	12	6	for	for	ADP
cc08hd8002x	12	7	by	by	ADP
cc08hd8002x	12	8	more	more	ADJ
cc08hd8002x	12	9	than	than	ADP
cc08hd8002x	12	10	one	one	NUM
cc08hd8002x	12	11	codon	codon	NOUN
cc08hd8002x	12	12	.	.	PUNCT
cc08hd8002x	13	1	the	the	DET
cc08hd8002x	13	2	codons	codon	NOUN
cc08hd8002x	13	3	that	that	PRON
cc08hd8002x	13	4	encode	encode	VERB
cc08hd8002x	13	5	a	a	DET
cc08hd8002x	13	6	particular	particular	ADJ
cc08hd8002x	13	7	amino	amino	NOUN
cc08hd8002x	13	8	acid	acid	NOUN
cc08hd8002x	13	9	are	be	AUX
cc08hd8002x	13	10	called	call	VERB
cc08hd8002x	13	11	synonymous	synonymous	ADJ
cc08hd8002x	13	12	codons	codon	NOUN
cc08hd8002x	13	13	.	.	PUNCT
cc08hd8002x	14	1	using	use	VERB
cc08hd8002x	14	2	synonymous	synonymous	ADJ
cc08hd8002x	14	3	codons	codon	NOUN
cc08hd8002x	14	4	,	,	PUNCT
cc08hd8002x	14	5	two	two	NUM
cc08hd8002x	14	6	different	different	ADJ
cc08hd8002x	14	7	codon	codon	NOUN
cc08hd8002x	14	8	sequences	sequence	NOUN
cc08hd8002x	14	9	can	can	AUX
cc08hd8002x	14	10	produce	produce	VERB
cc08hd8002x	14	11	identical	identical	ADJ
cc08hd8002x	14	12	amino	amino	NOUN
cc08hd8002x	14	13	acid	acid	NOUN
cc08hd8002x	14	14	sequences	sequence	NOUN
cc08hd8002x	14	15	.	.	PUNCT
cc08hd8002x	15	1	we	we	PRON
cc08hd8002x	15	2	are	be	AUX
cc08hd8002x	15	3	interested	interested	ADJ
cc08hd8002x	15	4	in	in	ADP
cc08hd8002x	15	5	studying	study	VERB
cc08hd8002x	15	6	whether	whether	SCONJ
cc08hd8002x	15	7	which	which	DET
cc08hd8002x	15	8	synonymous	synonymous	ADJ
cc08hd8002x	15	9	codon	codon	NOUN
cc08hd8002x	15	10	is	be	AUX
cc08hd8002x	15	11	used	use	VERB
cc08hd8002x	15	12	impacts	impact	NOUN
cc08hd8002x	15	13	the	the	DET
cc08hd8002x	15	14	resulting	result	VERB
cc08hd8002x	15	15	protein	protein	NOUN
cc08hd8002x	15	16	3d	3d	NOUN
cc08hd8002x	15	17	structure	structure	NOUN
cc08hd8002x	15	18	or	or	CCONJ
cc08hd8002x	15	19	fold	fold	NOUN
cc08hd8002x	15	20	.	.	PUNCT
cc08hd8002x	16	1	we	we	PRON
cc08hd8002x	16	2	study	study	VERB
cc08hd8002x	16	3	this	this	PRON
cc08hd8002x	16	4	by	by	ADP
cc08hd8002x	16	5	leveraging	leverage	VERB
cc08hd8002x	16	6	network	network	NOUN
cc08hd8002x	16	7	-	-	PUNCT
cc08hd8002x	16	8	based	base	VERB
cc08hd8002x	16	9	centrality	centrality	NOUN
cc08hd8002x	16	10	measures	measure	NOUN
cc08hd8002x	16	11	to	to	PART
cc08hd8002x	16	12	determine	determine	VERB
cc08hd8002x	16	13	trends	trend	NOUN
cc08hd8002x	16	14	describing	describe	VERB
cc08hd8002x	16	15	the	the	DET
cc08hd8002x	16	16	relative	relative	ADJ
cc08hd8002x	16	17	positions	position	NOUN
cc08hd8002x	16	18	of	of	ADP
cc08hd8002x	16	19	synonymous	synonymous	ADJ
cc08hd8002x	16	20	codons	codon	NOUN
cc08hd8002x	16	21	in	in	ADP
cc08hd8002x	16	22	a	a	DET
cc08hd8002x	16	23	protein	protein	NOUN
cc08hd8002x	16	24	.	.	PUNCT
cc08hd8002x	17	1	in	in	ADP
cc08hd8002x	17	2	the	the	DET
cc08hd8002x	17	3	long	long	ADJ
cc08hd8002x	17	4	run	run	NOUN
cc08hd8002x	17	5	the	the	DET
cc08hd8002x	17	6	work	work	NOUN
cc08hd8002x	17	7	discussed	discuss	VERB
cc08hd8002x	17	8	in	in	ADP
cc08hd8002x	17	9	this	this	DET
cc08hd8002x	17	10	thesis	thesis	NOUN
cc08hd8002x	17	11	may	may	AUX
cc08hd8002x	17	12	contribute	contribute	VERB
cc08hd8002x	17	13	to	to	ADP
cc08hd8002x	17	14	understanding	understanding	NOUN
cc08hd8002x	17	15	of	of	ADP
cc08hd8002x	17	16	how	how	SCONJ
cc08hd8002x	17	17	protein	protein	NOUN
cc08hd8002x	17	18	structure	structure	NOUN
cc08hd8002x	17	19	is	be	AUX
cc08hd8002x	17	20	folded	fold	VERB
cc08hd8002x	17	21	.	.	PUNCT