id	sid	tid	token	lemma	pos
sj139022705	1	1	though	though	SCONJ
sj139022705	1	2	many	many	ADJ
sj139022705	1	3	common	common	ADJ
sj139022705	1	4	bioinformatics	bioinformatic	NOUN
sj139022705	1	5	problems	problem	NOUN
sj139022705	1	6	are	be	AUX
sj139022705	1	7	amenable	amenable	ADJ
sj139022705	1	8	to	to	ADP
sj139022705	1	9	parallelization	parallelization	NOUN
sj139022705	1	10	and	and	CCONJ
sj139022705	1	11	large	large	ADJ
sj139022705	1	12	datasets	dataset	NOUN
sj139022705	1	13	are	be	AUX
sj139022705	1	14	becoming	become	VERB
sj139022705	1	15	the	the	DET
sj139022705	1	16	norm	norm	NOUN
sj139022705	1	17	for	for	ADP
sj139022705	1	18	biological	biological	ADJ
sj139022705	1	19	inquiry	inquiry	NOUN
sj139022705	1	20	,	,	PUNCT
sj139022705	1	21	biologists	biologist	NOUN
sj139022705	1	22	do	do	AUX
sj139022705	1	23	not	not	PART
sj139022705	1	24	generally	generally	ADV
sj139022705	1	25	have	have	VERB
sj139022705	1	26	the	the	DET
sj139022705	1	27	skillset	skillset	NOUN
sj139022705	1	28	to	to	PART
sj139022705	1	29	effectively	effectively	ADV
sj139022705	1	30	automate	automate	ADJ
sj139022705	1	31	,	,	PUNCT
sj139022705	1	32	parallelize	parallelize	NOUN
sj139022705	1	33	,	,	PUNCT
sj139022705	1	34	and	and	CCONJ
sj139022705	1	35	scale	scale	VERB
sj139022705	1	36	their	their	PRON
sj139022705	1	37	workflows	workflow	NOUN
sj139022705	1	38	.	.	PUNCT
sj139022705	2	1	this	this	DET
sj139022705	2	2	document	document	NOUN
sj139022705	2	3	describes	describe	VERB
sj139022705	2	4	contributions	contribution	NOUN
sj139022705	2	5	to	to	ADP
sj139022705	2	6	bioinformatics	bioinformatic	NOUN
sj139022705	2	7	ranging	range	VERB
sj139022705	2	8	from	from	ADP
sj139022705	2	9	collaborative	collaborative	ADJ
sj139022705	2	10	frameworks	framework	NOUN
sj139022705	2	11	to	to	ADP
sj139022705	2	12	the	the	DET
sj139022705	2	13	automation	automation	NOUN
sj139022705	2	14	of	of	ADP
sj139022705	2	15	common	common	ADJ
sj139022705	2	16	workflows	workflow	NOUN
sj139022705	2	17	to	to	ADP
sj139022705	2	18	the	the	DET
sj139022705	2	19	development	development	NOUN
sj139022705	2	20	of	of	ADP
sj139022705	2	21	novel	novel	ADJ
sj139022705	2	22	algorithms	algorithm	NOUN
sj139022705	2	23	.	.	PUNCT
sj139022705	3	1	we	we	PRON
sj139022705	3	2	begin	begin	VERB
sj139022705	3	3	by	by	ADP
sj139022705	3	4	describing	describe	VERB
sj139022705	3	5	biocompute	biocompute	NOUN
sj139022705	3	6	,	,	PUNCT
sj139022705	3	7	a	a	DET
sj139022705	3	8	web	web	NOUN
sj139022705	3	9	portal	portal	NOUN
sj139022705	3	10	that	that	PRON
sj139022705	3	11	overcomes	overcome	VERB
sj139022705	3	12	challenges	challenge	NOUN
sj139022705	3	13	in	in	ADP
sj139022705	3	14	user	user	NOUN
sj139022705	3	15	interface	interface	PROPN
sj139022705	3	16	design	design	NOUN
sj139022705	3	17	and	and	CCONJ
sj139022705	3	18	resource	resource	NOUN
sj139022705	3	19	sharing	sharing	NOUN
sj139022705	3	20	to	to	PART
sj139022705	3	21	facilitate	facilitate	VERB
sj139022705	3	22	collaborations	collaboration	NOUN
sj139022705	3	23	between	between	ADP
sj139022705	3	24	systems	system	NOUN
sj139022705	3	25	programmers	programmer	NOUN
sj139022705	3	26	,	,	PUNCT
sj139022705	3	27	bioinformatics	bioinformatic	NOUN
sj139022705	3	28	software	software	NOUN
sj139022705	3	29	developers	developer	NOUN
sj139022705	3	30	,	,	PUNCT
sj139022705	3	31	and	and	CCONJ
sj139022705	3	32	biologists	biologist	NOUN
sj139022705	3	33	.	.	PUNCT
sj139022705	4	1	next	next	ADV
sj139022705	4	2	,	,	PUNCT
sj139022705	4	3	we	we	PRON
sj139022705	4	4	highlight	highlight	VERB
sj139022705	4	5	several	several	ADJ
sj139022705	4	6	parallel	parallel	ADJ
sj139022705	4	7	workflow	workflow	NOUN
sj139022705	4	8	implementations	implementation	NOUN
sj139022705	4	9	developed	develop	VERB
sj139022705	4	10	to	to	PART
sj139022705	4	11	serve	serve	VERB
sj139022705	4	12	the	the	DET
sj139022705	4	13	needs	need	NOUN
sj139022705	4	14	of	of	ADP
sj139022705	4	15	the	the	DET
sj139022705	4	16	university	university	PROPN
sj139022705	4	17	of	of	ADP
sj139022705	4	18	notre	notre	PROPN
sj139022705	4	19	dame	dame	PROPN
sj139022705	4	20	's	's	PART
sj139022705	4	21	biologists	biologist	NOUN
sj139022705	4	22	.	.	PUNCT
sj139022705	5	1	these	these	DET
sj139022705	5	2	leverage	leverage	NOUN
sj139022705	5	3	insights	insight	NOUN
sj139022705	5	4	from	from	ADP
sj139022705	5	5	both	both	DET
sj139022705	5	6	biology	biology	NOUN
sj139022705	5	7	and	and	CCONJ
sj139022705	5	8	distributed	distribute	VERB
sj139022705	5	9	systems	system	NOUN
sj139022705	5	10	to	to	PART
sj139022705	5	11	achieve	achieve	VERB
sj139022705	5	12	their	their	PRON
sj139022705	5	13	goals	goal	NOUN
sj139022705	5	14	.	.	PUNCT
sj139022705	6	1	in	in	ADP
sj139022705	6	2	implementing	implement	VERB
sj139022705	6	3	them	they	PRON
sj139022705	6	4	we	we	PRON
sj139022705	6	5	encountered	encounter	VERB
sj139022705	6	6	and	and	CCONJ
sj139022705	6	7	solved	solve	VERB
sj139022705	6	8	several	several	ADJ
sj139022705	6	9	practical	practical	ADJ
sj139022705	6	10	challenges	challenge	NOUN
sj139022705	6	11	on	on	ADP
sj139022705	6	12	the	the	DET
sj139022705	6	13	path	path	NOUN
sj139022705	6	14	to	to	ADP
sj139022705	6	15	scaling	scale	VERB
sj139022705	6	16	up	up	ADP
sj139022705	6	17	.	.	PUNCT
sj139022705	7	1	we	we	PRON
sj139022705	7	2	close	close	VERB
sj139022705	7	3	with	with	ADP
sj139022705	7	4	the	the	DET
sj139022705	7	5	introduction	introduction	NOUN
sj139022705	7	6	of	of	ADP
sj139022705	7	7	a	a	DET
sj139022705	7	8	bioinformatics	bioinformatic	NOUN
sj139022705	7	9	algorithm	algorithm	NOUN
sj139022705	7	10	to	to	PART
sj139022705	7	11	detect	detect	VERB
sj139022705	7	12	loci	loci	NOUN
sj139022705	7	13	-	-	PUNCT
sj139022705	7	14	specific	specific	ADJ
sj139022705	7	15	selective	selective	ADJ
sj139022705	7	16	pressure	pressure	NOUN
sj139022705	7	17	favoring	favor	VERB
sj139022705	7	18	codon	codon	NOUN
sj139022705	7	19	rarity	rarity	NOUN
sj139022705	7	20	in	in	ADP
sj139022705	7	21	ortholog	ortholog	NOUN
sj139022705	7	22	groups	group	NOUN
sj139022705	7	23	that	that	PRON
sj139022705	7	24	span	span	VERB
sj139022705	7	25	archaea	archaea	ADJ
sj139022705	7	26	,	,	PUNCT
sj139022705	7	27	prokaryota	prokaryota	PROPN
sj139022705	7	28	,	,	PUNCT
sj139022705	7	29	and	and	CCONJ
sj139022705	7	30	eukaryota	eukaryota	NOUN
sj139022705	7	31	.	.	PUNCT