key: cord-0786497-fa415f2a authors: Kong, Xueting; Zheng, Jiamian; Liu, Xiaxin; Wang, Wandi; Jiang, Xuan; Chen, Jie; Lai, Jing; Jin, Zhenyi; Wu, Xiuli title: High TRGV 9 Subfamily Expression Marks an Improved Overall Survival in Patients With Acute Myeloid Leukemia date: 2022-02-10 journal: Front Immunol DOI: 10.3389/fimmu.2022.823352 sha: a0a97d57eae01e8c7ab812aee5b9145358548f0a doc_id: 786497 cord_uid: fa415f2a BACKGROUND: Heterogeneous T cells in acute myeloid leukemia (AML) have the combinatorial variety generated by different T cell receptors (TCRs). γδ T cells are a distinct subgroup of T cells containing TCRγ (TRGV) and TCRδ (TRDV) subfamilies with diverse structural and functional heterogeneity. Our previous study showed that clonally expanded TRDV T cells might benefit the immune response directed against AML. However, the features of the TRGV repertoire in AML remain unknown. To fully characterize the features of γδ T cells, we analyzed the distribution and clonality of TRGV I-III subfamilies (TRGV II is also termed TRVG 9), the proportions of γδ T cell subsets, and their effects on the overall survival (OS) of patients with AML. METHODS: In this study, the complementarity-determining region 3 (CDR3) size of TRGV subfamilies in γδ T cells of peripheral blood (PB) from de novo AML patients were analyzed by Genescan analysis. Expression levels of TRGV subfamilies were performed by real-time quantitative PCR. The proportions of total γδ T cells and their Vγ9(+) Vδ2(+) T cells subsets were detected by multicolor flow cytometry assay. We further compared the correlation among the TRGV gene expression levels, the proportion of Vγ9(+) Vδ2(+) T cells, and OS in AML. RESULTS: We first found that the distribution pattern and clonality of TRGV subfamilies were changed. The expression frequencies and gene expression levels of three TRGV subfamilies in AML samples were significantly lower than those in healthy individuals (HIs). Compared with HIs, the proportions of total γδ T cells and Vγ9(+) Vδ2(+) T cells were also significantly decreased in patients with AML. In addition, patients with AML who had higher expression levels of the TRGV gene and higher proportion of Vγ9(+) Vδ2(+) T cells showed better OS than their counterparts. Furthermore, high expression levels of TRGV 9 and proportion of Vγ9(+) Vδ2(+) T cells were identified as independent protective factors for complete remission in patients with AML. CONCLUSIONS: The restriction of TRGV usage might be related to the preference of usage of γδ T cells. Higher expression of TRGV subfamilies might be associated with better OS in AML. Higher TRGV 9 expression and increased Vγ9(+) Vδ2(+) T cells subfamilies might indicate a better prognosis in patients with AML. Acute myeloid leukemia (AML) is a malignant clonal disease originating from hematopoietic stem cells and characterized by genetic and clinical heterogeneity and high mortality (1) . Despite considerable progress in treating hematological malignancies, clinical outcomes of patients older than 60 years are unfavorable, and the overall long-term survival in patients with AML remains poor (2) . Recent studies have revealed that T cell immunodeficiency is a common characteristic of patients with AML, mainly due to peripheral T cells that restricted oligoclonal T cell repertoires, reduced thymic output function, and lower activation and response to antigens (3, 4) . T cells recognize specific ligands by specific T cell receptors (TCRs), which are heterodimers consisting of either ab and gd chains. Genes encode for the variable domains of TRG (g chain) and TRD (d chain), which are assembled by somatic recombination from variable (V), diversity (D, only for TRD), and joining (J) segments and compose three hypervariable or complementarity-determining regions (CDR1, CDR2, and CDR3) that occur during T cell differentiation (5, 6) . The TRG gene contains several different functional variable (TRGV) segments belonging to four subgroups (TRGV I-IV), and the TRD gene contains at least eight functional TRDV segments that are subdivided into eight TRDV subfamilies (TRDV 1-8) (5) (6) (7) (8) (9) . Previous studies showed that TRGV IV was a pseudogene, which was a simple combination between TRGV IV and TRGC segment lacking TRGJ segment and there was no any rearrangement in CDR3 by sequencing (10, 11) . Hence, the analysis of TRGV repertoire was acquired in three TRGV subfamilies in the present study. Nowadays, according to their TRD (TCRd) chain usage, human gd T cells are mainly divided into 2 major subsets including Vd1 and Vd2 in peripheral blood (PB). Several functional TRG (TCRg) gene segments are generally divided into Vg2, g3, g4, g5, g8, g9, g10 (also termed TRGV 2, TRGV 3, TRGV 4, TRGV 5, TRGV 8, TRGV 9 and TRGV10, respectively) (12, 13) . The V-genes of TRGV 2-5 and TRGV 8 have a relatively high sequence similarity, which are different from TRGV 9 sequences. Different TCRg chains and TCRd chains can be combined to form different types of gd T cells (14) . Although Vd1 T cells are predominantly associated with the Vd1 comprising TRGV 2, TRGV 3, TRGV 4, TRGV 5, TRGV 8, which belonging to TRGV I subsets, the majority of Vd2 T cells express an invariant TCR harboring TRGV 9, which belonging to TRGV II subsets (15) . In addition, TRGV 10 belongings to TRGV III subsets (12) . In the PB of healthy individuals (HIs), there is a predominant expression in the gd T cell population, which is the cell expressing Vg9 together with Vd2, termed Vg9 + Vd2 + T cells (15, 16) . The roles of some T cell subgroups in cancer are controversial because they have been suggested to play both an anti-tumor role and a pro-tumor role. The heterogeneous T cells in AML have the combinatorial variety generated by different TCRs, which might explain why some special T cell subsets have a controversial role in cancer immunity. Although PD-1 + Vb5.2 + and PD-1 + Vb12 + CD8 + T cells were thought to be related to poor prognosis in AML (17), our previous study found that clonally expanded TRDV T cells might benefit the immune response directed against AML (18) . However, the features of the TRGV repertoire in AML remain unknown, and the cellular immunity characteristics of AML have yet to be fully elucidated. To further understand the heterogeneity of gd T cells, in this study, we first analyzed the distribution pattern and clonality of TRGV subfamilies and further investigated correlation between expression levels of TRGV subfamilies and proportion of Vg9 + Vd2 + T cells and their clinical relevance in patients with AML. The Ficoll-Hypaque gradient centrifugation method was used to isolate mononuclear cells from fresh PB. The gd T cells were sorted by gd monoclonal antibodies and MACS magnetic cell sorting technique (Miltenyi Biotec, Germany) (19) . All samples were freshly obtained and subjected to immediate preparation. According to the manufacturer's recommendations, total RNA of gd T cells was extracted by Trizol (Invitrogen, USA). Superscript II Kit (Gibco, USA) was used to synthesize the first single-strand complementary DNA (cDNA). Subsequently, the quality of cDNA was confirmed by RT-PCR for b2 microglubin (b2M) gene amplification (the primers of b2M gene for RT-PCR were list in Table 2 ) (20). Three sense TRGV primers and a single TRGC reverse primer were used in unlabeled PCR for the amplification of the TRGV subfamilies. Runoff PCR was performed with fluorescent primers labeled at the 5' end with the FAM fluorophore (Cg-FAM) (TIB MOLBIOL GmbH, Germany). A DNA thermal cycler (BioMetra, Germany) was used to perform this reaction process. The primers are listed in Table 2 . PCR was performed as described in our previous report (19) (20) (21) . Aliquots of cDNA (1 mL) were amplified in 20 mL reactions with one of the three Vg primers and a Cg primer. The final reaction mixture contained 0.5 mM sense primer and antisense primer, 0.1 mM dNTPs, 1.5 mM MgCl 2 , 1× PCR buffer, and 1.25 U Taq polymerase (Promega, USA). After 3 min of denaturation at 94°C, 40 PCR cycles were carried out (94°C for 1 min, 60°C for 1 min, and 72°C for 1 min and a final elongation for 6 min at 72°C). All PCR products were stored at 4°C and ready for Genescan analysis (22) . Aliquots of the unlabeled PCR products (2 mL) were subjected to a cycle of runoff reaction with a fluorophore-labeled Cg-FAM primer. The labeled runoff PCR products (2 mL) were heatdenatured at 94°C for 4 min with 9.5 mL of formamide (Hi-Di Formamide, ABI, USA) and 0.5 mL of size standards (GENESCAN ™ -500-LIZ ™ , Perkin Elmer, USA). The samples were then loaded on 3100 POP-4 ™ gel (Performance Optimized Polymer-4, ABI, USA) and resolved by electrophoresis in an ABI 3100 DNA sequencer for size and fluorescence intensity determination using Genescan software (23). The gene expression levels of the TRGV subfamilies in cDNA of gd T cells were determined by qPCR with SYBR Green I technique, and the b 2 -microglobulin (b 2 M) gene was used as an endogenous reference. The primers are listed in Table 2 . qPCR was performed as described by Stams WAG et al. and our previous study (10, (24) (25) (26) . In brief, qPCR was performed in a total volume of 20 mL with approximately 1 mL cDNA, 0.5 mM of each primer (one of the three TRGV sense primer and the antisense primer Cg for TRGV amplification, b 2 M-for and b 2 M-back primers for b 2 M gene amplification), 2x RealMastrMix 10 mL (Tiangen, China). After 2 min of denaturation at 95°C, 40 PCR cycles were carried out (95°C for 15 s, 58°C for 20 s, and 72°C for 30 s). At the end of each run, melting curve analysis was performed starting at 65°C up to 95°C with an increase of 1°C per 2 s to verify primer specificities. Specific amplification of PCR products was analyzed by melting curve analysis. qPCR was repeated in at least three separate experiments. The following equation was used to calculate the relative expression level to the b 2 M gene for each target PCR. Relative mRNA expression = 2 -DCt × 100% [DC t = C t(TRGV subfamilies) -C t(b2M) ] (15). TRGV I 5'-TACCTACACCAGGAGGGGAAG-3' TRGV 9 5'-GGCACTGTCAGAAAGGAATC-3' TRGV III 5'-TCGACGCAGCATGGGTAAGAC-3' Cg 5'-GTTGCTCTTCTTTTCTTGCC-3' Cg-FAM 5'-FAM-CATCTGCATCAAGTTGTTTATC-3' b2M-for 5'-TACACTGAATTCACCCCCAC-3' b2M-back 5'-CATCCAATCCAAATGCGGCA-3' The following monoclonal antibodies APC/Cy7 anti-human CD3 (clone SK7), PE/Cy7 anti-human TCR g/d (clone B1), PerCP anti-human TCR Vd2 (clone B6), and APC anti-human TCR Vg9 (clone B3; Biolegend, USA) were used for cell surface staining following the manufacturer's instructions (27) . The stained cells were examined with BD FACS VERSE flow cytometer (BD, USA), and data were analyzed by Flowjo software (Flowjo LLC, USA). In this study, data were presented as median. Fisher's exact test was used to compare expression frequencies of three TRGV subfamilies between AML patients and HIs. Kruskal-Wallis test was used for comparison of different gene expression levels from different TRGV subfamilies in AML and HIs. Differences in mRNA expression level of TRGV between two groups were analyzed using the Mann-Whitney U test. Pearson correlation analysis was used to analyze the correlation of mRNA expression levels of TRGV subfamilies between two groups. Binary logistic regression analysis was performed to determine associations between expression levels of three TRGV subfamilies and clinical outcome of the AML patients. Through Kaplan-Meier method and cox regression analysis the effect of TRGV expression and the proportion of Vg9 + Vd2 + T cells on prognosis of AML were analyzed. All analyses included the following variables: including gender, age, white blood cell (WBC), red blood cell (RBC), platelet (PLT), bone marrow (BM) blast cells, French-American-British (FAB) subtype, gene mutation and treatment in patients. Only values with P < 0.05 was regarded as statistically significant. All results were analyzed by SPSS 25.0 and GraphPad Prism 8.4. In this study, the CDR3 region of three TRGV subfamily genes was analyzed by Genescan analysis in gd T cells from 30 patients with de novo AML and 10 HIs to assess the spectral pattern visually. Diversity and clonality of TCR repertoire demonstrated the ability of specific amplifications to respond to antigen stimulation. Based on the CDR3 TCR rearrangement lengths, the clonality of gd T cells was characterized as multipeaks and oligopeaks responding to polyclonality and oligoclonality. Polyclonality of the TRGV subfamily genes displayed a Gaussian distribution consisting of three or more peaks, and oligoclonality was a skewed spectral profile showing a single dominant peak. In this study, all patients with AML had a significantly skewed TCR repertoire with 16-21 of the three TRGV subfamilies (TRGV I, 9, and III) detected in each patient. Among AML samples, the most frequently expressed subfamily members were TRGV III (70%, 21/30) and TRGV 9 (66.67%, 20/ 30). TRGV I from patients with AML was detected only in 16 cases (53.33%, 16/30; Figures 1A-D) . All of the three TRGV subfamilies could be detected in gd T cells from HIs. The expression frequencies of the TRGV I and TRGV 9 subfamilies in patients with AML were lower than those in HIs (TRGV I: P = 0.007, TRGV 9: P = 0.043), whereas the TRGV III subfamily in AML was similar to that in HIs (P = 0.081; Figures 2A-C) . The deviation from the Gaussian profile could indicate a clonally expanded pattern. The PCR products produced only one peak, which represented that CDR3 lengths were identical, named oligoclonal pattern. We further analyzed the different clonotypic expansion patterns in HIs and patients with AML. Oligoclonal expansion was detected in the TRGV subfamily from six out of 30 cases in patients with AML ( Figure 1D) . The expression frequencies of clonally expanded TRGV subfamilies in the patients with AML were as follows: TRGV III (17%, 5/30), TRGV I (10%, 3/30), and TRGV 9 (10%, 3/30). However, there were no clonally expanded TRGV subfamilies that could be identified in HIs. Based on the clonally expanded pattern, we divided the clonal expansion frequency of the three TRGV subfamilies into three groups: polyclonality, oligoclonality and negative groups. The results showed a significant difference between patients with AML and HIs, and the clonal expansion frequencies of the TRGV subfamilies were statistically higher than those of HIs (TRGV I: P = 0.004; TRGV 9: P = 0.040; and TRGV III: P = 0.028; Figures 2D-F) . Subsequently, we focused on detecting expression levels of TRGV subfamilies by qPCR, so we expanded the samples' quantity, and further collected extra 26 AML samples on the basis of the original 30 samples. Therefore, three TRGV genes expression levels in a total of 56 patients with AML and 33 HIs as control were detected in our study. Results showed significant differences of expression levels in the TRGV subfamilies of HIs (c 2 = 9.998, P = 0.007) between TRGV I and TRGV 9 (P = 0.158), TRGV 9 and TRGV III (P = 0.002), and TRGV I and TRGV III (P = 0.082; Figure 3A ). There were also significant differences in the TRGV subfamilies of AML (c 2 = 7.208, P = 0.027) between TRGV I and TRGV 9 (P = 0.679), TRGV 9 and TRGV III (P = 0.014), and TRGV I and TRGV III (P = 0.032; Figure 3B ). We further compared the gene expression levels of the TRGV subfamilies in patients with AML and HIs. The gene expression levels of the three TRGV subfamilies in AML were lower than those in HIs (P < 0.001, P < 0.001, and P < 0.001; Figures 3C, G) . We also obtained more insight to investigate the correlation of the gene expression levels of the three TRGV subfamilies in HIs and patients with AML. In HIs, a significant positive correlation was found in the expression levels of TRGV I and TRGV 9 (r = 0.582, P < 0.001), TRGV I and TRGV III (r = 0.485, P = 0.004), and TRGV 9 and TRGV III (r = 0.591, P < 0.001; Figures 3D-F) . A positive correlation in the expression levels of TRGV I and TRGV 9 (r = 0.479, P < 0.001), TRGV I and TRGV III (r = 0.611, P < 0.001), and TRGV 9 and TRGV III (r = 0.609, P < 0.001) was also observed in patients with AML ( Figures 3D-F) . Based on previous finding, we were more interested in proportions of total gd T cells and Vg9 + Vd2 + T cell subsets from PB, so another 19 AML samples and 18 HIs were further collected and analyzed for FACS ( Figures 4A-D) . Compared with HIs, significantly lower proportions of total gd T cells (median: 4.83% vs. 10.5%) and Vg9 + Vd2 + T cells (median: 57.9% vs. 84.25%) were found in patients with AML (P < 0.001 and P = 0.001, respectively; Figures 4E, F) . Table 3 ). Furthermore, we also used the same way to access the relationship between the proportion of gd T cells, Vg9 + Vd2 + T cells and the prognosis of 19 AML patients. Univariate logistic regression analysis showed that the high proportion of Vg9 + Vd2 + T cells was an independent protected factor for CR (P = 0.044, OR = 0.963, 95% CI: 0.927-0.999), and age was an independent risk factor for AML-CR (P = 0.035, OR = 1.128, 95% CI: 1.009-1.261), but there was no significant difference in gd T cells and other factors (gender, age, WBC, RBC, PLT, BM blast cells, AML subtype, gene mutation and treatment) (P > 0.05) (data were not showed). Due to insufficient numbers of AML samples, there was no significant difference in multivariate logistic regression analysis. There was one patient was voluntarily left the hospital because of impact of COVID-19 in total 19 AML patients, so we collected outcome of 18 AML patients. Univariate cox regression analysis showed that patients with high proportion of gd T cells had low risk of death than those with low proportion (P = 0.008, hazard ratio (HR) = 0.109, 95% CI: 0.021-0.564), while multivariate cox regression analysis showed no significant difference (P > 0.05) (data were not showed). The survival analysis demonstrated that the high expression levels of TRGV I, TRGV 9 and TRGV III were significant related to better OS (P = 0.011; P < 0.001; P = 0.019) ( Figures 5A-C) . To better understand the combination of three TRGV subfamilies in predicting the OS of AML patients, we divided patients into the following 3 groups: TRGV I high TRGV 9 high TRGV III high , TRGV I, TRGV 9, or TRGV III high and TRGV I low TRGV 9 low TRGV III low . Interestingly, the results suggested that the group of TRGV I high TRGV 9 high TRGV III high had longer survival time (P = 0.001) ( Figure 5D ). Next, we further access the proportion of Vg9 + Vd2 + T cells from PB with the clinical outcome of AML patients. The OS in high Vg9 + Vd2 + T cells were longer than those in low Vg9 + Vd2 + T cells group (P = 0.039) ( Figure 5E) . The attractive features of gd T cells include non-MHC-restricted antigen recognition and abundant cytokine secretion capacity, which have raised expectations for their application in cancer adoptive immunotherapy (28) (29) (30) . The combinatorial variety generated by different TCRs might be the reason why gd T cells can exert diverse actions in distinct pathological types of diseases (31) . T cell immunodeficiency is a common feature in different hematological malignancies, including AML, immune thrombocytopenic purpura (ITP), B cell non-Hodgkin lymphoma, and graft-versus-host disease (GVHD) (21, (32) (33) (34) . Analysis of alterations in the TCR repertoire is a practical approach that can help understand the involved immunological abnormalities and provide guidance for clinics in translational research (19) . Analysis of the TRGV and TRDV repertoire provides a global picture of the distribution and clonal expansion of TCR gd subfamilies in ITP, multiple myeloma (MM), and GVHD (21, 32, 35, 36) . Our previous study also showed the clonally expanded TRDV T cells in AML (18) . However, the features of the TRGV repertoire in AML remain unknown. In this study, we investigated the expression pattern of TCR Vg (TRGV) subfamilies and characterized the correlation between the expression of TRGV and clinical outcome in patients with AML. To further compare the difference in TCR repertoire diversity, three TRGV gene spectral profiles were examined by Genescan analysis. In HIs, polyclonal expanded T cells, which showed a small proportion of multiple peaks, were detected in the majority of the TRGV subfamily. By contrast, a clonotypic expansion pattern, which included a high peak together with one or a few lower peaks named oligoclonality, was a common pattern for each sample. Skewed expression of the TRGV repertoire was an obvious characteristic of patients with AML compared with HIs who expressed nearly all of the TRGV subfamilies, which indicated that patients with AML might have low diverse immune responses due to gd T cell immunodeficiency. The T cell spectra are commonly characterized by a Gaussian distribution containing 6-8 peaks, which are named polyclonality in HIs, representing a repertoire that guarantees sufficiently diverse T cell clones (37) . The clonally expanded T cell repertoire was also detected in all samples in this study. Multiple oligoclonal expanded TRGV subfamilies were demonstrated in patients with AML who were different from HIs. Thus, the oligoclonal TRGV repertoire might be associated with leukemia-associated antigen. We also found that the gene expression levels of the TRGV repertoire in gd T cells between AML and HIs were different, and lower expression levels were found in TRGV genes in AML than in HIs. The change and pattern of TRGV subfamilies demonstrated that restrictive TRGV usage might be related to the preference of usage of gd T cells. The biological significance of the difference observed remains unknown, so we attempted to characterize the association between the expression level of the TRGV repertoire and clinical patient characteristics. Our previous study showed that TIGIT + Foxp3 + gd T cells and TIGIT + CD226gd T cells were related to the clinical outcome of patients with AML (38, 39) . In the present study, we further analyzed the relationship between the expression of the TRGV repertoire and the OS of patients with AML. Our results showed that a higher expression level of TRGV subfamilies was associated with better OS in patients with AML, and patients with highly TRGV I, TRGV 9, and TRGV III genes co-expressed had better OS than their counterparts. Moreover, we found that TRGV 9 was an independent protective factor in AML-CR, thereby indicating that patients with high TRGV 9 expression may have the better prognosis than those with low expression. In addition, our data showed that increased Vg9 + Vd2 + T cells subfamilies in patients with AML might correlate with better therapeutic effects. Related research showed that gd T cells played an essential role in cancer (40) . Such cells have a long-term disease-free survival advantage to patients with AML and increased gd T cells following hematopoietic stem cell transplantation (HSCT) (41, 42) . The known pleiotropic effects of gd T cells suggest multiple mechanisms by which gd T cells might promote survival after HSCT, which were consistent with our findings in patients with AML. Understanding the characteristics of TRGV subsets in patients with AML may be helpful for clinical application and promote the treatment of patients. However, these gd T cell subfamilies exerted certain anti-leukemia effects, so the anti-leukemia potency of gd T cells could be exhausted due to prolonged antigenic stimulation. In the long run, we should choose a specific anti-tumor gd T cell subgroup in gd T cell immunotherapy and try to use a combination of gd T cell adoptive immunotherapy and immune checkpoint inhibitors. Taken together, in addition to the previously reported clonally expanded TRDV T cells in AML (18) , our data further provide a detailed profile and feature of the TRGV repertoire in patients with AML. Importantly, the patients with AML who had high expression level of the TRGV gene or higher proportion of Vg9 + Vd2 + T cells were associated with favorable OS, which may be related to resorting anti-AML gd T function. Further studies are required to confirm and dissect the detailed mechanisms. These findings could partially explain to promote our understanding of the cellular immune features of gd T cells, which brings hope for immunotherapy to treat AML patients. The original contributions presented in the study are included in the article/Supplementary Material. Further inquiries can be directed to the corresponding authors. The protocol of all experiments was approved by the Ethics Committee of the First Affiliated Hospital of Jinan University. The patients/participants provided their written informed consent to participate in this study. Written informed consent was obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article. XW and ZJ were involved in experimental design and the concept development. XK and XL conducted the experiments. WW and XJ contributed to data analysis and figure preparation. JC and JL provided all samples and clinical data. ZJ, XK, and XW drafted the manuscript. All authors read and approved the final manuscript. 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The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fimmu.2022.823352/ full#supplementary-material Conflict of Interest: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.Publisher's Note: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.Copyright © 2022 Kong, Zheng, Liu, Wang, Jiang, Chen, Lai, Jin and Wu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). 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