key: cord-0874846-dqs21e0q authors: Netea, Mihai G.; Giamarellos-Bourboulis, Evangelos J.; Domínguez-Andrés, Jorge; Curtis, Nigel; van Crevel, Reinout; van de Veerdonk, Frank L.; Bonten, Marc title: Trained immunity: a tool for reducing susceptibility and severity of SARS-CoV-2 infection date: 2020-05-04 journal: Cell DOI: 10.1016/j.cell.2020.04.042 sha: 1238290e9600f11ae2728a4aa0a711e4b9511211 doc_id: 874846 cord_uid: dqs21e0q Abstract SARS-CoV-2 infection is mild in the majority of individuals, but progresses into severe pneumonia in a small proportion of patients. The increased susceptibility to severe disease in the elderly and individuals with co-morbidities argues for an initial defect in anti-viral host defense mechanisms. Long-term boosting of innate immune responses, also termed ‘trained immunity’, by certain live vaccines (BCG, oral polio vaccine, measles) induces heterologous protection against infections, through epigenetic, transcriptional and functional reprogramming of innate immune cells. We propose that induction of trained immunity by whole microorganism vaccines may represent an important tool for reducing susceptibility and severity to SARS-CoV-2. In December 2019, health authorities in Wuhan, China, identified a series of pneumonia cases of unknown etiology that were linked to the city's seafood market. The spread of the infection and the subsequent health emergency led to the mobilization of healthcare authorities, medical professionals and research communities. This resulted in the rapid discovery of the pathogen as a novel coronavirus, development of diagnostic tools, and steps for treatment protocols. This new pathogen was called severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), and the disease has been termed novel coronavirus infection 2019 . Transmission of SARS-CoV-2 occurs mainly via respiratory droplets, similar to the spread of influenza. The estimated basic reproduction number (R0) and serial interval are 2.2 and 5-6 days, respectively, a doubling time of the number of infected subjects every three days. The clinical spectrum of SARS-CoV-2 ranges from asymptomatic disease, to mild upper respiratory tract infection symptoms (fever, sore throat, cough, fatigue), to severe pneumonia with respiratory failure and death . Since the first reports of cases in Wuhan, SARS-CoV-2 spread rapidly throughout the world and on March 11 th 2020 the World Health Organization (WHO) declared the coronavirus outbreak a pandemic. Millions of people have been already infected, and more than one hundred thousand individuals have died. Despite all preventive measurements, the numbers of cases is still rising, with Europe and the United States being the hotspot of the pandemic, but with increasing number of cases in other countries and continents. Epidemiological data show that elderly and those with co-morbidities (diabetes, obesity, cardiovascular, respiratory, renal and lung diseases) are most susceptible to COVID-19 and more likely to suffer from the most severe disease complications. Interestingly, young children, including infants who are more susceptible to other infections, have milder symptoms and less severe COVID-19. One very important aspect in improving the outcome of the patients with COVID-19 is understanding the mechanisms leading to increased severity and mortality. The first event after the inhalation of SARS coronaviruses is the invasion of epithelial cells and type II pneumocytes through binding of the SARS spike protein to the angiotensin-converting enzyme 2 (ACE2) receptors ( Figure 1 ) (Kuba et al., 2005) This complex is proteolytically processed by the type 2 transmembrane protease TMPRSS2 leading to cleavage of ACE2 and activation of the spike protein (Glowacka et al., 2011) , thereby facilitating viral entry into the target cell. It has been suggested that cells in which both ACE2 and TMPRSS2 are expressed are most susceptible to entry by coronaviruses from the SARS family, among which the virus described to cause SARS (SARS-CoV) (Shulla et al., 2011) , and most likely also SARS-CoV-2. Viral entry and cell infection trigger the host's immune response, and an inflammatory cascade is initiated by innate immune cells. The receptor and signalling mechanisms actually responsible for the induction of inflammatory mediators such as cytokines or chemokines induced by SARS-CoV-2 are not yet identified. However, two possible mechanisms can be envisaged: one is represented by the release of danger signal molecules such as certain cytokines (e.g. IL-1α, IL-8) or ATP, and a second may involve a different recognition pathway mediated in professional immune cells by known patternrecognition receptors such as TLRs ( Figure 1 ). Indeed, it has been shown that SARS-CoV is recognized by TLR3 and TLR4 that induce an inflammatory reaction through both MyD88 (Sheahan et al., 2008) and TRIF-mediated pathways (Totura et al., 2015) , and a similar process may be hypothesized for SARS-CoV-2. Similarly, activation of the inflammasome and the IL-1β pathway by SARS-CoV (Shi et al., 2019) is also likely to play an important role in the pathogenesis: this hypothesis is supported by the recent transcriptional identification of IL-1 pathway as being strongly upregulated in COVID-19 patients (Ong et al., 2020) . Induction of innate immune responses is a crucial step in the pathophysiology of the disease: on the one hand it triggers the anti-viral host defense mechanisms necessary for the elimination of infection, but on the other hand it may contribute to hyperinflammation and tissue damage during the later stages of the disease in a minority of patients. The major clinical complication in patients with COVID-19 is respiratory failure due to local hyperinflammation and acute respiratory distress syndrome (ARDS). The pathophysiology of these complications has strong similarities with other severe viral lung infections such as influenza, and the other infections caused by coronaviruses (severe acute respiratory syndrome (SARS) and Middle-East respiratory syndrome (MERS). An important mechanism mediating lung pathology in these infections is a cytokine storm leading to the so-called 'macrophage activation syndrome' (MAS) (Channappanavar and Perlman, 2017; Huang et al., 2005; Wong et al., 2004) . Indeed, an increasing number of very recent studies argue for an increased systemic inflammatory reaction in patients with severe SARS-CoV-2 infection. Circulating concentrations of proinflammatory cytokines such as IL-6, TNF, MCP1, MIP1A, IP10 are increased in COVID-19 patients in ICU when compared to those who do not need treatment in ICU, although the concentrations of some of these cytokines were only moderately increased . This strong increase in systemic inflammation is associated with endothelial dysfunction reflected by elevated d-dimers , and hyperactive CCR6+Th17+ T-cells locally in the lung . This is supported by a recent study that described the sequence of immune cell population changes in one patient with mild-to-moderate COVID-19 that recovered from infection (Thevarajan et al., 2020) . In this patient, the increase in the systemic concentrations of proinflammatory cytokines was minimal, even during days 7-9 when the patient was symptomatic. This suggests that a mild course of the infection is associated with little systemic inflammatory effects. These data therefore suggest that an exuberant innate immune response in the later part of the disease is the main immune dysregulation in patients with severe, but not mild, COVID-19 infection. New studies suggest that immune dysfunction in COVID-19 is more complex however. In this respect, lymphopenia is one of the most important immune features of the disease that is associated with severity, with both CD4 and CD8 lymphocytes being defective (Qin et al., 2020) . Known age-related differences in the immune function of T-cell and B-cells could lead to insufficient control of viral replication, thereby increasing disease severity. Consistent with this, a recent study shows hyperinflammation of the immune response in COVID-19 patients, characterized by high cytokine production capacity of circulating monocytes despite the severity of the disease (which is different from bacterial sepsis), and high systemic concentrations of proinflammatory cytokines (Giamarellos-Bourboulis et al., 2020) . These data suggest that while sustained innate immune function leads to hyperinflammation, lymphocyte numbers decline and their function may be defective. It can thus be postulated that when someone with a potent immune response encounters the SARS-CoV-2 virus, a strong activation of local innate and adaptive immune responses keeps viremia under control, leading to low systemic inflammation and recovery. In contrast, in individuals with a defective immune response either due to old age or co-morbidities, unrestricted viral replication leads to high concentrations of virus, which in turn triggers hyperinflammation, and severe complications such as ARDS and death ( Figure 2 ). It could therefore be argued that a rational immune-based therapy should be adapted according to the phase of the disease. In the uninfected host, the strategy should be to boost the innate immune responses to enable viral replication to be kept under control. In the later phase of the disease, the aim should be to interrupt the hyper-inflammatory loop to prevent severe complications. We therefore argue that induction of innate immune reprogramming (trained immunity) before infection may be a rational approach for boosting antiviral responses and thus preventing infection. Treatment with inhibitors of the IL-1/IL-6 pathway has been proposed to be useful in the management of hyperinflammation in severely ill patients with COVID-19, and clinical trials with this strategy are under way. Innate immune responses are the first line of defense against invading pathogens. Both myeloid (e.g. neutrophils, monocytes, macrophages) and lymphoid innate immune cells (e.g. NK and γδT cells) contribute to the activation of host defense during infection, and they are able to eliminate the vast majority of microorganisms that infect us every day. Only when this first line of defense is overwhelmed by either large numbers of pathogens or very invasive microorganisms is the adaptive immune response (T-and B-cells) be activated. For a long time, it was believed that only cells of the adaptive immune system can mount immunological memory, and protect against recurrent infections. This property of lymphocytes is the basis of vaccine efficacy against specific infections. However, an increasing number of studies show that innate immune cells can also display adaptive characteristics after certain infections or vaccines, a property that is functionally similar to building immunological memory: this process has been termed trained immunity . Greater protection against reinfection, a de facto innate immune memory, has also been reported in plants and invertebrates, which lack an adaptive immune system. Studies performed in mice defective in functional adaptive immune responses such as Scid or Rag1 -/mice, also show that partial protection to reinfection can be mediated by innate immune cells (Kleinnijenhuis et al., 2012) . Finally, long-term functional changes with increased antimicrobial function of innate immune cells has been demonstrated in humans after vaccination with live vaccines (Kleinnijenhuis et al., 2012) . The molecular mechanisms responsible for the long-term reprogramming of innate immune cells such as monocytes, macrophages and NK-cells are epigenetic in nature. An initial challenge of innate immune cells by vaccines or living pathogens during infection leads to activation of intracellular pathways, that subsequently lead to the upregulation of proinflammatory gene transcription. After the initial stimulus is eliminated or subsides, gene transcription returns to baseline. Transcription of genes important for host defense and the production of proinflammatory cytokines is subsequently more potently increased when the monocytes or macrophages are re-challenged with the same or a different stimulus . To allow this to happen, the cell machinery must grant access to the regions of the genome that contain the target sequences and the regulatory elements of the genes involved in these processes. This is regulated through durable epigenetic modifications, which allow the unfolding of the chromatin and the accessibility of the transcription factors to the promoter and enhancer regions of immune-related genes involved . The persistence of epigenetic modifications permits cells to remain in a 'trained' functional state and allows an increased accessibility to proinflammatory genes, facilitating a faster and increased responsiveness after re-challenge. Metabolic processes leading to selective accumulation or depletion of certain metabolites of the central metabolism regulate this process, as they function as co-regulatory molecules for the epigenetic enzymes ( Figure 3 ). An important aspect relates to the durability of the trained immunity response, that is induced more pronounced anti-bacterial immunity (Yao et al., 2018) . This suggests that induction of trained immunity can provide protection also in infections in which local host defense mechanisms are important in specific organs such as the lung. The vaccine that has been probably best studied for the induction of trained immunity is the tuberculosis (TB) vaccine bacillus Calmette-Guérin (BCG). BCG is a live attenuated strain derived from an isolate of Mycobacterium bovis and is one of the most widely used vaccines in the world, with more than 130 million infants receiving this vaccine every year. Although developed as a vaccine against tuberculosis, numerous studies have shown its ability to induce potent protection against other infectious diseases: so-called 'off-target' or 'nonspecific' effects (NSEs). Several epidemiological studies in low-income countries have shown an association between neonatal BCG vaccination and a profound reduction in neonatal mortality (Benn et al., 2013) . Two meta-analyses performed at the request of WHO have concluded that BCG vaccination is very likely to have important beneficial NSEs, although the quality of some of the studies was questioned, and it was concluded that more research is warranted (Higgins et al., 2016) . In addition, experimental studies suggest that BCG may protect against viral pathogens, including respiratory syncytial virus, human papilloma virus and herpes simplex virus (Freyne et al., 2015; Moorlag et al., 2019) . Moreover, studies performed in mice provide evidence of an effect of intranasal BCG administration on secondary viral infections. In two separate studies, BCG reduced viral titers of influenza A virus compared to control, which resulted in reduced inflammation and lung injury (Mukherjee et al., 2017; Spencer et al., 1977) . Furthermore, enhanced resistance against various other viruses in BCG-vaccinated mice has been described, including herpes simplex virus type 1 (Floc'h and Werner, 1976) and 2 (Starr et al., 1976) , Sendai virus (Ishihara et al., 1987) , and ectromelia virus (Suenaga et al., 1978) . BCG vaccination of human healthy volunteers enhances the production of pro-inflammatory cytokines such as IL-1β, TNFα and IL-6 by monocytes upon ex vivo stimulation with unrelated pathogens (Kleinnijenhuis et al., 2012) . Moreover, we found that among human healthy volunteers who received a yellow fever vaccine as a model of a viral human infection, those who had received the BCG vaccine one month earlier, had less viremia and improved anti-viral responses as compared to individuals that received placebo (Arts et al., 2018) . Only limited studies have assessed the protective heterologous effects of BCG vaccination in adults. A recent study in adolescents in South Africa, investigating the impact of BCG vaccination on M. tuberculosis infection, has recorded the incidence of other infections to assess the safety of the vaccination. While this was not a planned endpoint in the trial, it is interesting to observe that individuals vaccinated with BCG recorded a 73% reduction in respiratory tract infections compared with the non-vaccinated individuals (Nemes et al., 2018) . A small study in Indonesia in the elderly reported that multiple doses of BCG vaccination resulted in a significant reduction in the number of respiratory tract infections as compared to placebo (Wardhana et al., 2011) . A clinical trial in Japan found a reduced risk of pneumonia upon BCG vaccination in previously tuberculin-negative elderly people (Ohrui et al., 2005) . The discovery that BCG can induce trained immunity and offers protection against heterologous infections, suggests that BCG vaccination may offer protection against respiratory tract infections, including viral infections. We therefore hypothesize that induction of trained immunity in general, and by BCG vaccination in particular, might be a potent preventive measure against SARS-CoV-2 infection and/or might reduce disease severity. The administration of BCG vaccine in immunocompetent adults is safe, even in latently TBinfected adults and in those with prior BCG vaccination (Hatherill et al., 2014) . In a randomized controlled trial that compared BCG revaccination with a novel TB vaccine and with placebo, no vaccine-related serious adverse events were observed in the 312 patients in the BCG group (Nemes et al., 2018) . Based on publicly available data on BCG vaccination and reported COVID-19 cases, several preliminary studies suggest that countries without universal policies of BCG vaccination (Italy, Nederland, Spain, USA, Ecuador) are more prone to be severely affected compared to neighboring countries with universal and long-standing BCG vaccination policies, what would be consistent with the idea that BCG protects the vaccinated elderly population. These data are however observational and prone to confounding issues such as limited testing and reporting in many countries, hence they provide at most indirect support for a protective effect of BCG (Dayal and Gupta, 2020; Green et al., 2020; Miller et al., 2020) . A randomized controlled trial provides the highest quality of evidence for this research question. Given the immediate threat of the SARS-CoV-2 epidemic, trials should be designed as pragmatic studies with a highly feasible primary endpoint, that can be continuously (on a weekly basis) measured. This allows for the most rapid identification of a beneficial outcome that would allow the community to also benefit from the intervention if, and as soon as, it has been demonstrated to be effective. Such trials could be first initiated in populations at high risk of infection, or those at high risk of mortality: hospital staff caring for COVID-19 patients are in the first category, while elderly individuals or patients with comorbidities would be in the second. Although immunosenescence may result in less effective responses in the elderly, a recent study demonstrated a largely preserved innate immune function, while adaptive immune responses (especially IFNγ/IL-22 production) are defective (Ter Horst et al., 2016) . These findings do suggest that an effective trained immunity response after vaccination may also occur in the elderly. Based on these data, trials assessing the efficacy of BCG vaccination in health care workers have been started in the Netherlands and Australia, and are being prepared in Denmark, United States, France, Uruguay and South Africa. In addition, a randomized clinical trial in which hospitalized elderly patients without immunosuppression have been vaccinated at hospital discharge either with placebo or BCG is ongoing in Greece. The study primary endpoint is the time until the first infection. Enrolment has finished and results are anticipated by October 2020. Moreover, another clinical study will assess the capacity of VPM1002 vaccine to protect against COVID-19. VPM1002 is a BCG strain that was genetically modified to improve its immunogenicity, by replacing the urease C encoding gene with the listeriolysin encoding gene from Listeria monocytogenes (Nieuwenhuizen et al., 2017) . Finally, in Tanzania and Uganda an RCT is under preparation that will randomize 2000 older adults (>50 years) under chronic care for conditions like hypertension and diabetes. In addition to BCG, induction of trained immunity by other vaccinations or microbial stimuli might be envisaged to protect against COVID-19. Measles and oral polio vaccine (OPV) have been also shown to provide protection against heterologous infections and mortality (for review see (Goodridge et al., 2016) ). Based on these data, it is justifiable to also evaluate these vaccines for induction of a non-specific boost of anti-viral mechanisms against COVID-19. Similarly, intranasal administration of the TLR3 ligand poly IC:LC has been shown to protect against SARS in experimental models (Kumaki et al., 2017) , and could be tested against infection with SARS-CoV-2. In relation to the modulatory approaches presented here, we propose using strategies that can improve the anti-viral responses of the host, namely trained immunity, to protect against infection with SARS-CoV-2. Induction of trained immunity with BCG vaccination results in a more effective cytokine response: cytokines important for anti-viral effects including IL-1β, TNF, interferons, are more readily produced. Importantly however, these cytokines are also present in high circulating concentrations in patients with severe forms of the disease, and can contribute to ARDS (Channappanavar and Perlman, 2017) . Inflammatory Th1/Th17 responses (Wu and Yang, 2020) may also contribute to the lung injury in the late phase of the disease. Therefore, the theoretical possibility that can the induction of trained immunity could have deleterious effects by boosting or inhibit the innate immune responses needs to be considered. The answer to this question relies on the pathophysiological stage of the disease when these two approaches are initiated. In healthy individuals who are vaccinated with BCG, and in which the innate antimicrobial mechanisms would be boosted by trained immunity, this is inferred to lead to decreased viremia, faster viral elimination as well as decreased inflammation, less symptoms and quicker recovery. In this context, both the circulating concentrations of inflammatory cytokines and the inflammatory Th1/Th17 responses would be less strongly induced. In contrast, an initial defective antiviral response in some individuals at risk (e.g. the elderly) probably leads to high viremia, deleterious systemic inflammation, and severe disease. Breaking the loop of systemic inflammation in these patients, for example by blocking IL-1 pathway with anakinra or IL-6 function with tocilizumab, could have life-saving effects in some of these patients. We thus propose that induction of trained immunity is an important host-directed approach in COVID-19 patients, which might lead to improved anti-viral host defense as well as decreased systemic inflammation, ultimately leading to a better chance of a favorable outcome (Figure 1 ). The COVID-19 pandemic is the most serious global health crisis since the Spanish flu in 1918, and probably the most important global crisis since the end of the Second World War. In such difficult situations in which hundreds of thousands of patients have already been infected, and thousands have died already, a rapid mobilization not only of healthcare authorities and medical community, but also of the entire strength of the research community is needed to identify the best methods for the diagnosis, prevention and treatment of the patients. One important component of the pathophysiology of COVID-19 is the dysregulation of inflammatory responses, and in this Perspective we described an overview of these processes, and proposed a rationale for the host-directed therapy based on induction of trained immunity in populations at risk. Several very important questions need to be tackled urgently regarding SARS-CoV-2 infection. Firstly, joint efforts should be made to decipher in detail the pathophysiology of the disease. While at this stage there are several similarities with other severe respiratory viral infections such as influenza, which help us to propose a first battery of immunomodulatory agents to be tested (such as anakinra or tocilizumab), there are also important differences and most likely additional pathways involved. Secondly, understanding in detail the pathophysiology of the disease will ultimately lead to the better design of new trained immunity approaches and large studies are needed to demonstrate clinically relevant benefits and to identify subgroups with highest medical gain. Finally, clinical trials testing the capacity of BCG to protect against COVID-19 have been initiated in several countries. However, BCG may not be the only vaccine that may have such positive heterologous effects: the new recombinant MTB-based vaccines such as VPM1002, or other vaccines such as measles vaccine and OPV may have similar effects and are also considered for clinical trials. Such approach to vaccination using trained immunity, even if successful, will only provide partial protection for a limited period of time. Therefore, induction of trained immunity while useful, it is only a bridge towards the development of a specific vaccine against SARS-CoV-2, which is the most important tool for controlling the pandemic. However, the employment of trained immunity boosters of host defense, even if effective for a limited period pf time, might contribute to reduce the spread of the infection in the first phases of a pandemic, and represent an important tool in the fight against a rapidly-spreading emerging pathogen (Figure 4) . One important aspect that should be underlined for all the components of research in COVID-19 is collaboration. In such a severe crisis as the pandemics with SARS-CoV-2, full exchange of methodologies and protocols, as well as collaboration within clinical trials is crucial for increasing the chance to identify new tools for the diagnostic and therapy, and improving the outcome of our patients. Genetic and non-genetic risk factors, as well as the presence of co-morbidities, determine the efficacy of the host defense mechanisms. In the early phase of the infection, a potent host defense leads to suppression of viral replication, which subsequently leads to low levels of inflammation, less severe symptoms and a good prognosis. If host defense mechanisms are defective, they can lead to massive viral replication, systemic hyperinflammation, high severity of the disease and ultimately death. Trained immunity is defined as an enhanced innate immune response to different pathogens, after an initial challenge such a vaccination or infection. Certain microbial ligands capable of binding specific pattern recognition receptors are able to induce durable metabolic and epigenetic changes in innate immune cells. This reprogramming of the metabolic and the epigenetic landscape of the cell allows a quick accessibility of transcription factors to the promoters and enhancer regions of pro-inflammatory genes upon restimulation, facilitating gene expression. The increased metabolic activity of the cell affords a fast supply of energy and metabolites necessary to mount a robust immune response upon restimulation. The combination of these epigenetic and metabolic effects affords increased responsiveness upon secondary stimulation with the same of a different ligand and even protect against a subsequent infection. Boosting the host defence by induction of trained immunity, induces a durable state of activation in the cells of the innate immune system. 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