key: cord-0910994-pa932yjd authors: Shorunke, Folajimi O.; Okolocha, Emmanuel C.; Kia, Grace S.; Usman, Aishat; Akano, Oluseyi; Awosanya, Emmanuel J. title: Prevalence and risk factors associated with SARS-CoV-2 infections among veterinary practitioners and dogs patients, June-August 2020, Lagos, Nigeria date: 2022-03-24 journal: One Health Outlook DOI: 10.1186/s42522-022-00062-1 sha: 99574aff90dfa66413693cadaf92daebf1df48d3 doc_id: 910994 cord_uid: pa932yjd BACKGROUND: Lagos State is the epicenter of COVID-19 in Nigeria, having the highest number of cases and death. Veterinary practitioners play an important role in public health and risk exposure to SARS-CoV-2, the virus that causes COVID-19 while attending to animal patients and owners. We determined the prevalence of covid-19 among veterinary practitioners and their dog patients in Lagos, and the associated risk factors during the lockdown. METHODS: We administered questionnaires, reviewed clinical records and conducted serological test to determine the COVID-19 status of 112 veterinary practitioners and 154 dog patients and to assess the associated factors in nine veterinary clinics or hospitals between June to August 2020. Data were analyzed using descriptive statistics, bivariate and multivariate analyses at 5% significant level. RESULT: The mean age of participants was 37.5±10.5 and 66 (58.9%) were male. COVID-19 cases among the veterinary practitioners and dogs were 29 (25.9%) and 3 (2%), respectively. Predictors of COVID-19 cases among veterinary practitioners were contact with a SARS-CoV-2 infected dog (AOR: 25.42; CI 4.73-136.66); being a veterinary doctor working during the lockdown (AOR: 6.11; CI 1.56-24.00) and not disinfecting examination table after attending to dogs (AOR: 12.43; CI 1.39-110.99). CONCLUSION: Veterinary practitioners and dogs in Lagos were exposed to SARS-COV-2 virus during the COVID-19 lockdown. Contact with SARS-CoV-2 infected dogs, being a veterinary doctor working during the lockdown and not disinfecting examination tables after clinical examination were predictors of COVID-19 cases among veterinary practitioners in Lagos State. Strict Infection, Prevention and Control measures are recommended in veterinary practice. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s42522-022-00062-1. SARS-Coronavirus-2 (SARS-CoV-2) causes COVID-19 disease which was first reported in December 2019 in Wuhan China [1, 2] . The virus was thought to have emerged from an animal source and spilled-over to human population. Although genetically closely related viruses were isolated from Rhinolophus bats [3] , the source of SARS-CoV-2 and its route of introduction into One Health Outlook *Correspondence: shorunkef@live.com 1 Nigerian Field Epidemiology and Laboratory Training Program, Abuja, Nigeria Full list of author information is available at the end of the article human population is unknown. The first official case of COVID-19 in Nigeria was reported on February 27, 2020 [4] when a patient of Italian origin, arrived in Lagos from Europe. As at 9 th July 2021 there were 168,110 confirmed cases with 2,129 deaths (CFR 1.3%) across all the 36 states in Nigeria, [5] with Lagos having the highest cases 60,097 (36%) and death 456 (22%). As part of the COVID-19 response in Nigeria, lockdown measures were instituted which restricted movement of persons and other activities. However, essential services such as hospitals, emergency services, security services, pharmacies, electricity and gas, food supply chains and veterinary establishments were in operation. [6, 7] In Lagos State, veterinary practitioners work in both the public and private sectors delivering services such as animal disease diagnosis and treatment, vaccine administration, public health care, drug distribution, health education and providing care for animal patient. Some of the services rendered encourage close contact with animals and animal owners which may promote exposure to SARS-CoV-2 amidst limited supply of PPE which were in high demand in human hospitals [8] . Although the current pandemic of COVID-19 is being sustained through human to human transmission, animal infections with SARS-CoV-2 have however been reported in some countries. Several animal species have been reported to be infected with SARS-CoV-2 either naturally or experimentally. [9] Evidence from risk assessments, epidemiological investigations, and experimental studies do not suggest that live animals or animal products play a key role in SARS-CoV-2 infection in humans. [10] However, several animal species have tested positive for SARS-CoV-2, mostly as a result of close contact with humans infected with COVID-19 disease. [9] It is important to monitor infections in animals to better understand their epidemiological role in the maintenance and spread of SARS-CoV-2. With the increase in cases of COVID-19 infections and the occurrence of community transmission of the disease in various communities in Lagos Nigeria, and with the fact that veterinary practitioners were one of the essential workers in Lagos during lock down, [7, 8] we determined the prevalence of COVID-19 infection among veterinary practitioners, dogs patients presented at veterinary clinics; and factors associated with the infection. during the lockdown. The study was done in Lagos State, Nigeria. Lagos State is a port city located in the Southwestern geopolitical zone of Nigeria and has the smallest landmass of all the 36 states in the country measuring 3,577 sq km. [11] It is the most populated state in Nigeria with a population of 9,013,534 during the 2006 national census [12, 13] and a projected population of 14, 009,120 by 2020. Lagos state is divided into five administrative regions and 20 local government areas (LGA). [14] Lagos was the epicenter of the outbreak of COVID-19 in Nigeria. There are currently 30 laboratories capable of testing for COVID-19 by RT-PCR in Lagos State: 5 public laboratories and 25 approved private laboratories. [15] There were eight isolation centers located in Lagos State during the lockdown period for the isolation and treatment of COVID-19 positive patients, with a 547 bed capacity. [15] A private hospital later received approval to manage clients willing to pay for their services. [15] We conducted a cross-sectional study involving veterinary practitioners and canine patients presented in veterinary clinics in Lagos State. Inclusion criteria: All veterinary practitioners in selected private and public clinics or hospitals, working as frontline veterinary workers in Lagos during the period of the COVID-19 pandemic lockdown, from June to August 2020. All dogs, attended to or boarded in selected private and public clinics or hospitals in Lagos during the period of the COVID-19 pandemic from June to August 2020. Inclusion Criteria: All dogs that the owners gave permission to be sampled. Exclusion Criteria: All dogs in the inclusion criteria that cannot be restrained for sample collection. Sample size of veterinary practitioners: As described by Omair [16] Where: n = desired sample size Z = value for the corresponding confidence level (e.g., 1.96 for 95% confidence) p = estimated value for the proportion of a sample/ expected prevalence (6%) [17] q = 1-P, d = is the margin of error (e.g., 0.05= ± 5%) n = 1.96 2 ×0.06(1−0.06) 0.05 2 = 87 A minimum sample size of 87 respondents was estimated. Sample size of dogs tested. All dogs in inclusion criteria (total sampling). A multistage sampling technique with 3 stages was adopted for the study. Stage 1: Lagos State is divided into five divisions based on the geographical and socioeconomic distribution of the state ( fig. 1 ) which is also the distribution of the location of public veterinary health facilities in Lagos. The five divisions are Ikeja, Badagry, Ikorodu, Lagos Island and Epe divisions. State public primary veterinary health facilities within these zones, making up to five primary veterinary health clinics were selected (complete sampling). In addition, four private veterinary clinics that operated during the lockdown were randomly selected from the same division as the public veterinary facility earlier selected this included Ikeja, Ikorodu, Lagos Island and Badagry divisions. Stage 2: total sampling of all the nine veterinary health facilities was done. Stage 3: All Veterinary practitioners that worked in selected clinics during the period of the lock down, from June to August 2020, were selected and a semi-structured questionnaire administered to them either electronically or by an interviewer. Confirmed cases for human subject were determined using the case definition by the Nigeria Center for Disease Control (NCDC). [18] which defined a confirmed case as "Any person with laboratory confirmation of SARS-CoV-2 infection through PCR. Confirmed cases for animal subject was any dog with IgG/IgM antibody RDT detection with or without signs and symptoms. In September 2020 we reviewed the hospital case file register to select the dogs attended to at the clinics during the study period. All the dogs that fit the inclusion criteria were selected for blood sampling after obtaining approval from the owners. Two questionnaires were developed for this study using the Kobotool: the first is for veterinary practitioners. We piloted this questionnaire by collecting data from four veterinarians not included in the study sample. Feedback on their understanding of each question was received and questions were adjusted accordingly. The average completion time of the questionnaire was 10 minutes. The final questionnaire had structured, closed-ended questions with responses based on multiple-choice. The veterinary practitioner questionnaire had two sections: the first section consisted 11 questions on socio-demographic variables such as age, sex, educational qualification, marital status, household number; management factors which included years of experience, work cadre, clinic types, clinic locations; and COVID-19 status; while the second section consisted of six questions assessing the level of contact with dogs by the veterinary practitioners and their adherence to COVID-19 IPC while on duty. The questionnaire was administered to the veterinary practitioners by trained interviewer or electronically through the department of veterinary services WhatsApp group. The COVID-19 status of the respondents were then verified through Surveillance Outbreak Response Management and Analysis System (SORMAS). The second questionnaire was administered to the dog owner or handler and used to obtain dogs demographics, which included age, sex, LGA of residence, clinic presented at and dog breed at both public and selected private veterinary health facilities throughout Lagos. All dogs attended to by the veterinary practitioners in the nine selected veterinary clinics were screened for IgG/ IgM SARS-CoV-2 antibodies using Uni-science COVID-19 RDT test kit. [19] Blood samples (5ml) were collected into plain sample bottles, preserved on ice packs between 4 0 c to 8 0 c and transported to the laboratory for analysis. Sera were obtained from the clotted blood samples after centrifugation at 1500rpm for 10minutes. Serological test was carried out according to manufacturer's instruction. Test results were communicated to the participating clinics for proper handling of positive cases. We conducted descriptive statistics to summarize the data in form of frequencies, proportions and percentages using Microsoft Excel (2016). Maps of distributions of positive cases among veterinary practitioners and dogs based on location was also obtained using QGIS. Bivariate analysis was conducted to determine factors associated with COVID-19 infection at p< 0.10. Multivariate logistic regression was used to identify independent predictors at p< 0.05 using Epi-info version 7. LGAs in Lagos State participated in the study with a 100% response rate. The mean age of participants was 37.5±10.5 and 66 (58.9%) were male. More than half, 76 (68%) resided in urban areas of the state with the highest 44 (36%) from Ikeja LGA, 29 (25.9%) of the respondents returned a positive COVID-19 result (Table 1) . A total of 3 (2.0%) of 154 dogs tested returned a positive SARS-CoV-2 infection result, all below 12 months of age, and were brachycephalic breeds ( Table 2) . A total of 80 (51.9%) presented to Government clinics and the largest proportion 48 (31.2%) resident in Ikeja LGA. The highest proportion of COVID-19 cases among veterinary practitioners was in clinic 3 which also had 5.0% of the dogs tested positive. None of the veterinary practitioners in clinic 2 was positive, however it had the highest proportion of positive cases among dogs (Table 3 ). In the bivariate analysis ( (Table 5) . A total of 23 COVID-19 positive veterinary practitioners sampled resided in Ikeja LGA, while the remaining are scattered in three other LGA in Lagos. (Fig. 2) . A total of 2 SARS-CoV-2 positive canine among those sampled resided in Ikeja LGA with Ikorodu LGA recording 1 case. (Fig. 3) In this study, majority of veterinary practitioners and few of the dogs attended to during the COVID-19 lockdown in Lagos were exposed to the SARS-CoV-2 virus. More so, factors such as having close contact with SARS-CoV-2 positive dogs, being a veterinary doctor attending to dog patients in clinics during the Lagos lockdown period, and not disinfecting the examination table after attending to dogs in the clinic were predictors of being a COVID-19 case among veterinary practitioners. Such knowledge can help to contain the pandemic among this group of essential service providers post lockdown, through adopting the right approach to precautionary measures. [8] A total of 29(25.9%) of the veterinary practitioner in our study returned a positive result, among which 72.5% of cases were male with the majority of the cases being among the younger veterinary practitioners in the private sector and those staying in the urban settlement of Lagos State. This is in tandem with a 2021 gender based study of COVID-19 incidence in Nigeria, [20] which showed that more cases of the infection are seen among the male gender in urban locations than female. In our study, married practitioners were more likely to return a positive COVID-19 result, this is because they have higher possibility to be exposed to other members of their family each day than single practitioners who are likely to be living alone, although this finding was not significant at multivariate level. Ikeja LGA was one of the epi-center of the COVID-19 infection in Lagos State, coming only behind Eti-Osa and Ibeju-Lekki LGAs. [5] Positive veterinary practitioners in Lagos came majorly from Ikeja with only 3 cases coming from Eti-Osa, 2 from Badagry and only one from Ibeju-Lekki LGAs. This distribution is related to that among the general population [5] suggesting a relationship with the community transmission of the COVID-19 infection. The distribution of infected dogs also had a relationship with the distribution of positive respondents, with more cases found among dogs that resides in Ikeja LGA. Only 3(2%) of dogs tested for SARS-CoV-2 returned a positive result. This could be because our study was carried out quite early during the pandemic in Lagos, Nigeria. Community transmission of the infection was only confirmed in Lagos by June 2020, [21] just about the same time we commenced our study, hence more cases among animals at this stage of the pandemic might not have occurred. Being a veterinary doctor working in Lagos both in public and private clinics during the lockdown was a risk factor for returning a positive COVID-19 result, this is because they are more at risk of close contact with their clients and patients and according to a recent national survey of similar population, [8] Nigeria were shown to have a lower practice score for carrying out COVID-19 prevention practices during the pandemic, hence their higher likelihood to return a positive result. In our study, we found that exposure of a veterinary practitioner to a positive dog was a risk factor to their returning a positive COVID-19 result, this finding is similar to that found in a study conducted in 2020 among dogs and cats belonging to COVID-19 positive households in Italy, [22] where being exposed to a COVID-19 positive household and verse-versa was significantly associated with returning a positive result. This is a significant finding indicating the possibility of a zooanthroponotic or anthropozoonotic potential of the SARS-CoV-2 virus thereby creating a solid basis for a similar study that will make use of genomic sequencing to establish temporality of infection. Adherence to IPC etiquettes, during the pandemic, has proven to be a major way to contain the disease at all levels in the society, non-pharmaceutical prevention measures like social distancing, wearing of face masks in public places, regular washing of hands, and use of hand sanitizers has been recommended by the US CDC and other public health organization worldwide. In our study, we found out that veterinary practitioners that disinfect their examination table after attending to dogs were protected from the COVID-19 infection as against those that did not adhere to this practice. We however, recognize that our study has some limitations. Being the foremost survey on SARS-CoV-2 infection among dogs in Lagos, we had the challenge of the right test kits to use for diagnosis among the animal subjects, as RT-PCR, which was the gold standard for COVID-19 diagnosis was unavailable for animal subjects at the time our study was conducted. However, we were able to determine possible exposure of dogs in the study area to SARS-CoV-2 virus using serological test. Further study is required when SARS-CoV-2 diagnostic test kits for animals especially dogs are readily available for a better diagnostic sensitivity and specificity. We were also limited in our ability to determine the temporal relationship that exist between dogs and human cases, due to the cross-sectional study design adopted, but an association was established which was a significant addition to existing knowledge as at the time the study was conducted. The prevalence of COVID-19 infection is relatively high among veterinary practitioners and low among dogs in Lagos, Nigeria from June to August 2020. Predictors of COVID-19 case among veterinary practitioners included contact with a SARS-CoV-2 infected dog, being a veterinary doctor working during the lockdown period, and not disinfecting examination table after attending to dogs in the clinic. We recommend that veterinary clinics should routinely screen dogs with clinical signs consistent with SARS-CoV-2 infection being admitted into their facility and ensure the judicious use of disinfectants after attending to dogs. Infection prevention and control measures should also be strictly adhered to by veterinary doctors when attending to dogs and clients in the clinic. LGA Attitudes and Practices Towards COVID-19: An Epidemiological Survey in North-Central Nigeria J Community Health CDC_ AA_ refVal= https% 3A% 2F% 2Fwww. cdc. gov% 2Fcor onavi rus% 2F2019-ncov% 2Fabo ut% 2Find ex. html Bats Might Be Origin of SARS | The Scientist Magazine ® [Internet COVID-19 in Nigeria: a disease of hunger NCDC Coronavirus COVID-19 Microsite Coronavirus disease (COVID-19) Nigeria Centre for Disease Control Level of Knowledge, Attitude and Perception About COVID-19 Pandemic and Infection Control: A Cross-Sectional Study Among Veterinarians in Nigeria Population-Lagos State Lagos State Government Estimated Community Seroprevalence of SARS-CoV-2 Antibodies -Two Georgia Counties Estimates of measles case fatality ratios: a comprehensive review of community-based studies † Lagos State Government -Centre of Excellence Lagos approves seven private laboratories for COVID-19 testing -Healthwise Sample size estimation and sampling techniques for selecting a representative sample Seroprevalence of SARS-CoV-2 Among Frontline Health Care Personnel in a Multistate Hospital Network -13 Academic Medical Centers Nigeria Centre for Disease Control COVID-19 IgG/IgM Rapid Testing Kit -Usciencecorp COVID-19 incidence and mortality in Nigeria: gender based analysis The Looming Dangers of Explosion in Community Transmissions of COVID-19 in Nigeria Evidence of exposure to SARS-CoV-2 in cats and dogs from households in Italy Acknowledgements I wish to acknowledge the effort and co-operation of staffs and principal officers of the department of veterinary services, Lagos state ministry of agriculture Nigeria. Their effort in ensuring the success of this study in Lagos is indeed very commendable. The online version contains supplementary material available at https:// doi. org/ 10. 1186/ s42522-022-00062-1.Additional file 1: A Microsoft excel xlsx file format. Social demographic distribution of veterinary practitioner respondents during our study from June to August 2020. This file shows the data from which figure 2 was derived and also showed the selected LGA in which Figure 1 highlights. The COVID-19 status response and the LGA of residents of respondents are indicates on column C and G of the spreadsheet respectively. A Microsoft excel xlsx file format. Data used for multivariate analysis of risk factors responsible for the occurrence of COVID-19 infection among veterinary practitioners in Lagos June to August 2020. This is the file from which the multivariate analysis of significant risk factors from the bivariate analysis of table 3 was carried out, the result of this analysis gave rise to the result in table 5. This Manuscript had been submitted for pre-print at research-square, however an earlier version of the manuscript had been posted by research square (DOI:10.21203/rs.3.rs-668868/v1) and its licensed under a CC BY 4.0 License. This revised version is however different from the pre-print in-terms of the method of data analysis employed, result obtained and conclusion.Authors' contributions FOS drafted the manuscript, designed the questionnaire and collected the data. FOS also performed the statistical analysis. E.C.O, G.S.K, O.A helped with the conceptualization of the study and also revision of the manuscript contents. E.J.A AND A.U revised the manuscript critically for important intellectual content, helped with drawing appropriate tables and figures and drawing out conclusion for the study. All the authors listed read and approved the final manuscript. This research was self-funded by the author. All data generated or analyzed during this study are included in this published article [and its supplementary information files]. Not applicable. The authors declare that they have no competing interests.