key: cord-1014233-occrkn7t
authors: Jafarinejad, Habib; Moghoofei, Mohsen; Mostafaei, Shayan; Salimian, Jafar; Azimzadeh Jamalkandi, Sadegh; Ahmadi, Ali
title: Worldwide prevalence of viral infection in AECOPD patients: A meta-analysis
date: 2017-10-14
journal: Microb Pathog
DOI: 10.1016/j.micpath.2017.10.021
sha: e1cb64fa097f94efbeadfdc5e98ed7d9d0e58f87
doc_id: 1014233
cord_uid: occrkn7t

BACKGROUND AND OBJECTIVE: Chronic obstructive pulmonary disease (COPD) is a chronic progressive lung disease. On the other hand, viral infections of the airway are associated with the acute exacerbations of COPD. A systematic review and meta-analysis were performed to determine the prevalence rate of viral infections in acute exacerbations of COPD patients. METHODS: PubMed database was systematically searched for population-based prevalence studies (1930–2017). Fixed and random effects models were used for estimation of summary effect-sizes. Between-study heterogeneity and publication bias were also calculated. “Viral infections” and “COPD patients with exacerbations” were the two critical inclusion criteria. RESULTS: Twenty-eight studies were selected out of 26078 articles for the present review. The overall estimation of the prevalence of viral infection was 0.374 (95% C.I: 0.359–0.388). Also, the evident heterogeneity of viral infection was observed among the studies (Cochran Q test, p value < 0.001 and I-squared = 97.5%). The highest and lowest prevalence rate was related to rhinovirus and echovirus, respectively. Also, the results of this study showed that the prevalence of viral infection in exacerbated COPD patients has fluctuation during the years with a slight increase and decrease. CONCLUSIONS: The results of this systematic review demonstrated that respiratory viral infections have an important role in the acute exacerbation of COPD (AECOPD). In addition, determining the exact geographic epidemiology of these viruses is very important to manage the treatment of these infections.

Chronic obstructive pulmonary disease (COPD) is a chronic progressive lung disease, which is the fourth leading cause of death worldwide [1, 2] . About 174.5 million (2.4%) of people worldwide (2015) suffer from COPD [3] . Cough, sputum production, and shortness of breath are the most common symptoms of COPD [1] . COPD Exacerbation is the most complicated status of COPD diagnosed by a sudden worsening of COPD symptoms, including shortness of breath, quantity, and color of phlegm [4] . As many studies imply, COPD acute exacerbations are a multifactorial consequence mainly caused by respiratory infections [5] . Smoking, air pollution, genetics, and viral infections are most important risk factors for the disease [1, 6] . Almost all people experience airway viral infections during their life in which most cases are improved without developing the chronic respiratory disease [6] . Several studies confirmed the association between airway inflammation and the tissue remodeling and destruction [7] . Airway inflammation has a central role in the pathogenesis of COPD, and on the other hand, persistent infections lead to chronic inflammation [7] . In COPD patients, exacerbations are mainly due to frequent infections. According to the role of viruses for inflammation and involvement of inflammation in COPD pathogenesis, studying the presence of viral infections in the airway of high-risk persons is important. The most human respiratory viruses associated with exacerbations of COPD are divided into two categories [1] : Major viruses: human rhinovirus, influenza virus and respiratory syncytial virus (RSV) [2] , Minor viruses: parainfluenza virus, coronavirus, human metapneumovirus and adenovirus [8] . The very important in preventing these problems. For this purpose, different techniques were developed, including serology, molecular methods such as PCR and RT-PCR [2] . Respiratory viruses that cause AECOPD are reported in several studies to help with the management of AECOPD patients. We aimed to systematically review the literature and perform a meta-analysis to determine the frequency of viral infection among COPD patients and to evaluate the hypothesis that the viral infection prevalence rate is associated with COPD exacerbation.

A systematic search was conducted using PubMed to identify available articles (until March 2017). According to MeSH terms, searches were done by using the following keywords: "chronic obstructive pulmonary disease (COPD)", "Exacerbation", "infection", "microbe", "bacteria", "viral" and "colonization" alone or combined together with the Boolean operators "OR", "AND" and "NOT" in the Keywords/Title/ Abstract field. Also, the reference list of selected full-text papers was precisely searched manually to find additional citations not retrieved by the web searching. It should be noted no attempt was made to consider unpublished studies. Furthermore, gray literature, dissertations, and relevant proceedings of international congresses were not explored. Finally, we restricted our search to the original articles or abstracts published which reported the prevalence of viral infection in COPD patients. The literature search was conducted by two independent researchers in two stages. Disagreements among researchers were resolved by discussion or, if necessary, by a third researcher. Journals and authors were not blinded during study selection.

A protocol for inclusion and exclusion criteria was defined for eligible peer-reviewed publications according to the following criteria: 1) PubMed articles published up to 2017; 2) The articles in English language reporting the prevalence of viral infection among COPD patients with exacerbations; 3) All Studies included samples from sputum, nasopharyngeal swab, and nasal lavage; 4) The reported data related to a group of individuals taken from the general population; and 5) Studies that used PCR, Real-Time PCR, RT-PCR, and culture methods. Major exclusion criteria were listed as follows: 1) Studies with unknown sample origins; 2) Studies that failed to present data clearly; 3) Studies were conducted on animal models; 4) Researches that have viral and H. Jafarinejad et al. Microbial Pathogenesis 113 (2017) 190-196 bacterial co-infections; 5) Studies with overlapping subjects, time, and place of sample collection; 6) Congress abstracts, review articles, case report articles and studies reported in languages other than English, meta-analysis or systematic reviews, and duplicate publication of the same study.

The preferred reporting items for systematic reviews and metaanalysis (PRISMA) guidelines were used to assess the quality of the included studies. The PRISMA Statement consists of a 27-item checklist and a four-phase flow diagram [9] . A complete information list was extracted from the articles into a Microsoft Excel worksheet. These data were including the first author's name, publication date, sample size, the prevalence of viral infection, detection method, research location, and references. Extracted data were qualified by two other researchers, independently. Furthermore, unclear data were consulted and achieved consensus before recording an entry in the dataset. Cohen's kappa as the agreement coefficient between the researchers was acceptable and was equal to 0.85.

Pooled relative frequency (RF) and its corresponding 95% CI was used to evaluate the prevalence of viral infection in COPD disease. The inverse of the Freeman-Tukey Double arcsine transformation of relative frequencies to calculate a pooled RF [10] . The heterogeneity and the variation in the pooled estimations were assessed by using Cochran's Q test and I2, respectively, and significance was considered at P < 0.05 level [11] . The pooled RF was made in a random effect model while heterogeneity existed between the individual studies and otherwise this pooled effect sizes were derived from a fixed effect model. However, sensitivity analysis was done by successively removing a particular study or group of studies (if any) that had the highest impact on the heterogeneity test. A funnel plot was established for checking the existence of publication bias. The funnel plot asymmetry was measured by Egger's linear regression test and Begg's test (P < 0.05 levels were considered statistically significance for publication bias) [12] . Finally, the sub-group analysis was used on the detection method, kind of sample, geographic continents, year of publication, and type of virus. All statistical analyses were conducted by using data analysis and statistical software (STATA) (version 11.0; Stata Corporation, College Station, TX).

A total of 26078 articles were retrieved from PubMed. In a primary screening process, 21769 of the publications were excluded according to COPD Mesh terms in the title or abstract (COPD, chronic obstructive pulmonary disease). The retained 3580 publications were screened according to "Infection" Mesh terms, including "Infect*" OR "Microb*" OR "Virus" OR "Viral" OR "Bacteri*" OR "Probiotic" OR "Influenza" OR "Colonization" in the title and abstract which resulted in 724 publications. Then, all 724 publications were manually assessed for viral infections in the title and abstract, resulting in 108 papers. After eligibility evaluation, finally, 23 papers were retained for full-text evaluation. The study selection process and flowchart of the literature search is shown in Fig. 1 . Table 1 Characteristics of studies included in the systematic review and meta-analysis.

Year of Study 

Eleven of the studies had been published before 2010 and the others were 2010 and later. The most and the lowest studies were conducted on the European continent (18/28; 64%), and in England and the America continent (1/23; 3.5%), respectively. In addition, 9 studies were conducted in Asia (9/28 (32%)). Only in one study was used nasal lavage and oropharyngeal swab samples, 6 and 17 studies were used nasopharyngeal swab and sputum samples respectively. The laboratory techniques used in the studies were PCR, Real-Time PCR, RT-PCR, and culture, which were used in 10, 12, 5, and 2 studies, respectively. More information was presented in Table 1 .

It was shown that the pooled estimation of the prevalence of viral infections in COPD patients was 0.374 (95% C.I: 0.359-0.388). Among all patients, 1368 cases (36.7%) were viral infections positive. Also, the heterogeneity in estimating the pooled prevalence among the studies was statistically significant; Cochran Q test, P < 0.001, I2 = 97.7% ( Fig. 2 & Table 2 ).

According to the sub-group analysis, the highest prevalence of viral infections in COPD patients was related to rhinovirus in the first subgroup (0.320; 95% C.I: 0.300 to 0.340), studies that published after 2010 in the second sub-group (0.375; 95% C.I: 0.358 to 0.392), studies that used PCR for detection in the third sub-group (0.397; 95% C.I: 0.374 to 0.421), studies that used the nasal lavage in the next sub-group (0.565; 95% C.I: 0.459, 0.670), and studies that were conducted in Europe in the last sub-group (0.390; 95% C.I: 0.372 to 0.409). The lowest prevalence of viral infection was related to Echovirus (0.008; 95% C.I: 0.000 to 0.022), and Enterovirus (0.030; 95% C.I: 0.001 to 0.063), respectively ( Table 2 ). According to Lowess smoothing analysis, the prevalence of viral infection in exacerbated COPD patients has a fluctuation during the years with a non-significant slight increase and decrease. (Fig. 3) . 

Based on Egger's regression test, in most of the cases, the publication bias was not statistically significant. In addition, no publication bias was detected according to the Begg's adjusted rank correlation test (Table 2 & Fig. 4 ). Sensitivity analysis was performed by sequential omission of individual studies. The pooled prevalence from sequential omission was not significantly changed (0.420; 95% C.I: 0.320 to 0.510), indicating that the results were statistically robust (Fig. 5) .

This meta-analysis is performed to estimate the geographical distribution of viral infections in COPD patients worldwide. According to the sensitivity analysis, the results of this meta-analysis is robust against any included study. But, the funnel plot indicated non-significant right bias, which assumes in general a symmetry assumption. Previous studies demonstrated that during the exacerbation of COPD, some viruses are frequently detected and the immune system responses to these viruses may be involved in the severity of exacerbations (for example, increased levels of IL-8 due to rhinovirus infection) [8] . Another effective factor is the increased oxidant stress response to viral infections in COPD exacerbation [4] . During exacerbations, levels of IL-6 and plasma fibrinogen increase significantly, suggesting that respiratory viral infections increase systemic inflammation and thus increase the frequency of AECOPD [4] . In most recent studies, PCR based methods have been used extensively for detection, which resulted in the increased sensitivity of viral detection 2 to 3 times more than other methods [2, 39] . In addition, in our meta-analysis study, PCR based methods were the most common detection methods. It has been confirmed in many studies that respiratory viruses are involved in 30% of AECOPD patients [39] . Through more sensitive molecular methods, the role of viruses in the COPD pathogenesis is better understandable [40] . Seemungal In addition, they demonstrated that COPD patients with viral infections had higher inflammatory cytokine levels compared to COPD patients with negative viral infections and healthy controls. They showed the direct association between viral infections and COPD exacerbations [13] . Among all the viruses found in COPD patients, the rhinovirus is the most common virus (58%), maybe due to the fact that this virus is the major cause of common cold and also is widespread in the community [16] . Rohde et al. (Germany, 2003) performed a case-control study on AECOPD patients and detected 56% viral infections in the AECOPD group compared to 19% in controls, suggesting a possible association between respiratory viral infections and COPD exacerbations. Also, they demonstrated a higher rate of viral detection in the sputum sample than nasal lavage [17] . In another study, Hutchinson et al. (Australia, 2007) demonstrated that some viruses such as parainfluenza, influenza, and picornavirus are strongly associated with the development of AECOPD [20] . Previous studies showed that picornavirus was the most common virus associated with AECOPD, followed by influenza and RSV [2] . In our study, the overall prevalence of viral infections in COPD patients was 42.7%, the most detected viruses were rhinovirus, influenza A, and RSV, and the last ones were echovirus, enterovirus, and WU polyoma virus. The difference in the prevalence of viral infections in these patients could have many reasons such as geographical region, sample type, sample size, sample time, sample transport system, and type of the technique). The current study demonstrated that the prevalence of viral infection in COPD patients was slightly increased by the year of publication and then was again decreased. The possible reasons may be increased individual and social health levels, vaccination for some viruses, prophylaxis of patients, etc. Before developing the laboratory molecular detection methods, the role of viral infections in COPD patients was underestimated, but after the development of sensitive and specific molecular methods, it became clear. In the first line of defense in AECOPD patients, they are treated with antibiotics based on two factors, including the severity of the COPD and the severity of exacerbation [42] . It is obvious that overused or unnecessary antibiotic therapies for treatment of viral infections may simultaneously lead to the advent of multidrug resistant bacteria that are not the real causal agent of the current infection. Therefore, applying more sensitive and rapid methods for a definitive diagnosis of the real cause of the disease can help to make a precise and more exact treatment of AECOPD patients with viral infections and avoid the unnecessary use of antibiotics. On the other hand, these rapid methods can reduce patients' costs and prevent antibiotic resistance to bacteria. In addition, according to the association between COPD exacerbations and respiratory viral infections, more effective control, prevention, and therapy for these viral infections are needed.

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None to declare.