This is a table of type bigram and their frequencies. Use it to search & browse the list to learn more about your study carrel.
bigram | frequency |
---|---|
ribosomal frameshifting | 286 |
nucleic acids | 172 |
stop codon | 146 |
nucleic acid | 145 |
specific amplification | 138 |
rna polymerase | 133 |
reading frame | 126 |
gene expression | 124 |
supplementary table | 111 |
secondary structure | 106 |
immunodeficiency virus | 94 |
frameshift efficiency | 91 |
human immunodeficiency | 91 |
amino acid | 87 |
slippery sequence | 83 |
virus type | 81 |
viral rna | 78 |
escherichia coli | 78 |
rna synthesis | 77 |
sf asf | 75 |
dependent rna | 75 |
rna pseudoknot | 73 |
supplementary data | 68 |
amino acids | 67 |
rna viruses | 67 |
rna binding | 65 |
frameshifting efficiency | 64 |
sukh superfamily | 63 |
cord uid | 62 |
acids res | 62 |
doc id | 62 |
res doi | 62 |
mm nacl | 60 |
previously described | 60 |
programmed ribosomal | 60 |
firefly luciferase | 58 |
mg ml | 58 |
crystal structure | 58 |
rf signals | 58 |
saccharomyces cerevisiae | 57 |
time pcr | 57 |
respiratory syndrome | 56 |
rna structure | 56 |
viral genome | 55 |
highly conserved | 55 |
small molecules | 55 |
site trna | 53 |
binding site | 52 |
frameshift site | 51 |
copy number | 51 |
secondary structures | 50 |
bloom filter | 49 |
cell lines | 49 |
acute respiratory | 49 |
stranded rna | 49 |
pol ii | 49 |
sg mrna | 49 |
base pairs | 48 |
exon skipping | 48 |
severe acute | 47 |
sars coronavirus | 47 |
room temperature | 46 |
ribosomal frameshift | 46 |
mm tris | 46 |
recombination events | 46 |
cell death | 46 |
rna secondary | 45 |
human genome | 45 |
active site | 45 |
virus rna | 44 |
binding protein | 43 |
viral proteins | 43 |
gel electrophoresis | 43 |
described previously | 43 |
thermodynamic stability | 43 |
small molecule | 43 |
site loop | 43 |
viral replication | 42 |
total rna | 42 |
mm hepes | 42 |
slippery site | 42 |
translational frameshifting | 41 |
binding sites | 41 |
performed using | 40 |
viral genomes | 40 |
mm mgcl | 40 |
negative control | 39 |
virus genome | 39 |
antisense oligonucleotides | 39 |
csl exosome | 39 |
positional clustering | 39 |
amplification events | 39 |
reverse transcriptase | 38 |
rna pseudoknots | 38 |
infected cells | 38 |
rna interference | 37 |
alternative splicing | 37 |
interest statement | 37 |
wild type | 37 |
acids research | 37 |
rna virus | 37 |
genomic rna | 36 |
nar online | 36 |
luciferase reporter | 36 |
ge healthcare | 36 |
primer extension | 36 |
rna samples | 36 |
none declared | 35 |
oxidative stress | 35 |
loop structure | 35 |
chemical probes | 35 |
base pairing | 35 |
mammalian cells | 34 |
virus variation | 34 |
genomic dna | 34 |
cell line | 34 |
ribosomal rna | 34 |
sequence analysis | 33 |
false positives | 33 |
terminal domain | 33 |
structural basis | 33 |
breast cancer | 33 |
mm edta | 33 |
luciferase activity | 33 |
open reading | 33 |
previous studies | 33 |
stranded dna | 32 |
sequence data | 32 |
protein synthesis | 32 |
frameshift signal | 31 |
frameshifting signal | 31 |
ebola virus | 31 |
ltr promoter | 31 |
virus replication | 31 |
zinc finger | 31 |
rrna degradation | 30 |
shift site | 30 |
strand rna | 30 |
dna polymerase | 30 |
molecular beacons | 30 |
may also | 30 |
base pair | 29 |
single nucleotide | 29 |
target genes | 29 |
messenger rna | 29 |
rna replication | 29 |
sequence alignment | 29 |
rna integrity | 29 |
digital array | 29 |
cleavage site | 29 |
containing mm | 29 |
reverse transcription | 29 |
complex formation | 29 |
renilla luciferase | 29 |
antiviral activity | 28 |
rna chaperone | 28 |
acid sequence | 28 |
cov nsp | 28 |
probe design | 28 |
gibbs sampling | 28 |
structural proteins | 27 |
bloom filters | 27 |
quadruplex structures | 27 |
directed mutagenesis | 27 |
mutational analysis | 27 |
isothermal amplification | 27 |
syndrome coronavirus | 27 |
rna structures | 27 |
frame maintenance | 27 |
uga codon | 26 |
leukemia virus | 26 |
unfolded protein | 26 |
multiple sequence | 26 |
influenza virus | 26 |
ifn induction | 26 |
expression levels | 26 |
helicase activity | 26 |
mm dtt | 26 |
western blot | 26 |
open access | 26 |
thermo fisher | 26 |
protein response | 26 |
west nile | 26 |
polyacrylamide gel | 26 |
acetic acid | 26 |
data sets | 25 |
fisher scientific | 25 |
quality control | 25 |
surveyor tm | 25 |
zero frame | 25 |
kcal mol | 25 |
pcr products | 25 |
nucleotide sequence | 25 |
multiplex pcr | 25 |
mm kcl | 25 |
reference sequence | 25 |
final concentration | 25 |
labeled rna | 25 |
cell culture | 25 |
fusion protein | 25 |
infectious bronchitis | 25 |
stop codons | 24 |
sequence database | 24 |
rna interactions | 24 |
dengue virus | 24 |
ifn activation | 24 |
cells expressing | 24 |
local stability | 24 |
results showed | 24 |
protein interactions | 24 |
reading frames | 24 |
polymerase ii | 24 |
transfected cells | 24 |
tissue culture | 24 |
point mutations | 24 |
free energy | 24 |
dual luciferase | 24 |
applied biosystems | 24 |
eav nsp | 23 |
sequencing data | 23 |
bronchitis virus | 23 |
ribosomal pausing | 23 |
determine whether | 23 |
genome sequences | 23 |
ribosomal protein | 23 |
fs product | 23 |
assay system | 23 |
blot analysis | 23 |
dna replication | 23 |
variation resource | 23 |
copy numbers | 23 |
nucleotide sequences | 23 |
trna sec | 23 |
mrna transcription | 23 |
codon readthrough | 23 |
reference genome | 23 |
viral sequences | 23 |
frameshift products | 22 |
chain reaction | 22 |
nucleocapsid protein | 22 |
catalytic domain | 22 |
also observed | 22 |
incomplete translocation | 22 |
polymerase chain | 22 |
hash functions | 22 |
stress response | 22 |
host proteins | 22 |
length cd | 22 |
northern blot | 22 |
minigenome rna | 22 |
mass spectrometry | 22 |
destabilizing activity | 22 |
site effect | 21 |
data indicate | 21 |
ft cells | 21 |
positive control | 21 |
rna quality | 21 |
binding pocket | 21 |
antisense oligonucleotide | 21 |
archaeal dnag | 21 |
rna degradation | 21 |
transcription factor | 21 |
genome replication | 21 |
rna dimerization | 21 |
maximum rate | 21 |
promoter activity | 21 |
supplementary figures | 21 |
three times | 21 |
coronavirus ribosomal | 21 |
nuclease toxins | 21 |
wide range | 20 |
hepes ph | 20 |
generated using | 20 |
rna helix | 20 |
expression vector | 20 |
termination codon | 20 |
muscular dystrophy | 20 |
viral infection | 20 |
see supplementary | 20 |
class i | 20 |
toprim domain | 20 |
cell lysates | 20 |
statistically significant | 20 |
rna adp | 20 |
trna slippage | 20 |
rf signal | 20 |
lentiviral vector | 20 |
stimulatory rna | 20 |
dna sequencing | 20 |
est mrna | 20 |
line probing | 20 |
life cycle | 20 |
locked nucleic | 20 |
mediated isothermal | 20 |
frameshift proteins | 20 |
terminal segment | 20 |
bovine serum | 19 |
pathway i | 19 |
mutation scanning | 19 |
prf activity | 19 |
molecular beacon | 19 |
protein sequences | 19 |
protein sequence | 19 |
side chain | 19 |
rna polymerases | 19 |
truncated cd | 19 |
target effects | 19 |
described earlier | 19 |
conserved residues | 19 |
viral transcription | 19 |
large number | 19 |
coronavirus genome | 19 |
reference sequences | 19 |
pcr amplification | 19 |
binding activity | 19 |
near cognate | 19 |
hcl ph | 19 |
small interfering | 19 |
previously reported | 18 |
quadruplex dna | 18 |
mrna stability | 18 |
luciferase assay | 18 |
important role | 18 |
iii iv | 18 |
using bst | 18 |
rna substrates | 18 |
prf stimulator | 18 |
xxy yyz | 18 |
cellular uptake | 18 |
protein products | 18 |
translational readthrough | 18 |
dna fragments | 18 |
rna genome | 18 |
side chains | 18 |
cells treated | 18 |
mrna decay | 18 |
immunity proteins | 18 |
molecular biology | 18 |
sukh domain | 18 |
frameshift product | 18 |
pcr product | 18 |
two different | 18 |
programmed translational | 18 |
specific products | 18 |
error rate | 18 |
yeast cells | 18 |
rna elements | 18 |
taken together | 18 |
mdx mice | 17 |
even though | 17 |
buffer containing | 17 |
frameshift signals | 17 |
sense strand | 17 |
translation initiation | 17 |
false positive | 17 |
host cell | 17 |
inhibitory effect | 17 |
terminal region | 17 |
sequence alignments | 17 |
forming sequences | 17 |
untranslated region | 17 |
immune response | 17 |
protease inhibitor | 17 |
ri rna | 17 |
sequence similarity | 17 |
sox binding | 17 |
mosaic virus | 17 |
test whether | 17 |
least one | 17 |
time rt | 17 |
dna damage | 17 |
crystal structures | 17 |
luciferase gene | 17 |
lysis buffer | 17 |
first step | 17 |
rna chaperones | 17 |
nt spacer | 17 |
genome sequence | 17 |
nile virus | 17 |
agarose gel | 17 |
recoding events | 17 |
smi knr | 17 |
binding domain | 17 |
exterior surface | 17 |
lacz gene | 16 |
human cytomegalovirus | 16 |
orf ab | 16 |
antisense strand | 16 |
hepatitis virus | 16 |
generation sequencing | 16 |
trna arg | 16 |
data set | 16 |
mechanical strength | 16 |
binding peptides | 16 |
ii iii | 16 |
western blotting | 16 |
data structure | 16 |
coding sequences | 16 |
also found | 16 |
vitro transcription | 16 |
spacer length | 16 |
loop kissing | 16 |
human cells | 16 |
commonly used | 16 |
rna processing | 16 |
endoplasmic reticulum | 16 |
increasing concentrations | 16 |
binding motifs | 16 |
nmr spectroscopy | 16 |
stalled ribosomes | 16 |
results indicate | 16 |
elongation factor | 16 |
toxin systems | 16 |
curve analysis | 16 |
palindromic sequence | 16 |
coding region | 16 |
clinical trials | 16 |
mrna levels | 16 |
terminal loop | 16 |
polymerase activity | 16 |
barr virus | 16 |
high levels | 16 |
hspa motif | 16 |
cd tr | 16 |
interfering rnas | 16 |
rna complex | 15 |
synonymous site | 15 |
rdrp activity | 15 |
data structures | 15 |
premature termination | 15 |
murine leukemia | 15 |
national center | 15 |
time points | 15 |
dna binding | 15 |
pathway iii | 15 |
kinetic model | 15 |
conserved regions | 15 |
frameshifted ribosomes | 15 |
chaperone activity | 15 |
duchenne muscular | 15 |
binding affinity | 15 |
solution structure | 15 |
melting curve | 15 |
cirv genome | 15 |
template tunnel | 15 |
loop i | 15 |
nuclease domains | 15 |
archaeal exosome | 15 |
site trnas | 15 |
coronavirus replication | 15 |
mobility shift | 15 |
quantified using | 15 |
reticulocyte lysate | 15 |
translational bypassing | 15 |
interfering rna | 15 |
cell viability | 15 |
reporter system | 15 |
nuclease domain | 15 |
degfact values | 15 |
synonymous sites | 15 |
coding regions | 15 |
closely related | 15 |
translational recoding | 15 |
genetic code | 15 |
see also | 15 |
host protein | 15 |
acid residues | 15 |
dna samples | 15 |
recent advances | 15 |
data suggest | 15 |
analysis revealed | 15 |
tertiary structure | 15 |
well plates | 15 |
contains two | 15 |
exon inclusion | 15 |
real mutations | 15 |
binding motif | 15 |
polymerase i | 14 |
subgenomic mrna | 14 |
mis assays | 14 |
cleavage sites | 14 |
clef zinc | 14 |
structural features | 14 |
genes encoding | 14 |
terminal domains | 14 |
splicing pattern | 14 |
clinical samples | 14 |
prf stimulation | 14 |
release factor | 14 |
positive fraction | 14 |
two types | 14 |
rna strands | 14 |
type dnag | 14 |
bp hairpin | 14 |
transfer rna | 14 |
cell cycle | 14 |
protein binding | 14 |
cognate trna | 14 |
gene silencing | 14 |
induce frameshifting | 14 |
calculated using | 14 |
large subunit | 14 |
cells transfected | 14 |
results suggest | 14 |
rna oligonucleotides | 14 |
poliovirus rna | 14 |
gene copy | 14 |
lys mcm | 14 |
pol i | 14 |
functional analysis | 14 |
coding sequence | 14 |
query sequence | 14 |
lna dna | 14 |
three different | 14 |
reference genomes | 14 |
tagged madp | 14 |
pseudoknot structure | 14 |
exogenous expression | 14 |
trna lys | 14 |
nuclear extracts | 14 |
structure prediction | 14 |
structural element | 14 |
csfv ns | 14 |
dynamic range | 14 |
tl sl | 14 |
hydrogen bonds | 14 |
nt downstream | 14 |
elp mutant | 14 |
pol gene | 14 |
rate constant | 14 |
specific binding | 14 |
type i | 14 |
cdi systems | 14 |
state abundance | 14 |
based assays | 14 |
target gene | 14 |
access publication | 14 |
translation elongation | 14 |
novo initiation | 13 |
long terminal | 13 |
ribosome frameshifting | 13 |
amplification products | 13 |
fhv rna | 13 |
phylogenetic analysis | 13 |
termination codons | 13 |
sequence comparison | 13 |
recoding signals | 13 |
mm imidazole | 13 |
final intensity | 13 |
quantitative pcr | 13 |
molecular weight | 13 |
structural studies | 13 |
dna viruses | 13 |
frameshift inducing | 13 |
significant differences | 13 |
true positives | 13 |
independent experiments | 13 |
zika virus | 13 |
predicted stem | 13 |
purified using | 13 |
translocational ribosome | 13 |
target cells | 13 |
reporter plasmid | 13 |
may play | 13 |
deep sequencing | 13 |
dimer formation | 13 |
biotechnology information | 13 |
lung cancer | 13 |
new england | 13 |
complete genome | 13 |
human cd | 13 |
analyzed using | 13 |
mrna secondary | 13 |
rna template | 13 |
trna leu | 13 |
capture probe | 13 |
relaxation dispersion | 13 |
target sequence | 13 |
simplex virus | 13 |
pathway ii | 13 |
proteins encoded | 13 |
attenuation structure | 13 |
target cell | 13 |
publication charges | 13 |
total number | 13 |
type pk | 13 |
reaction mixture | 13 |
site codon | 13 |
mm tcep | 13 |
herpes simplex | 13 |
high affinity | 13 |
antisense activity | 13 |
luciferase expression | 13 |
binding proteins | 13 |
panhandle structure | 13 |
santa cruz | 13 |
mhc class | 13 |
quadruplex structure | 13 |
ese site | 12 |
decoding center | 12 |
binding scores | 12 |
genome annotation | 12 |
yeast saccharomyces | 12 |
ifn production | 12 |
thank dr | 12 |
pred balb | 12 |
also used | 12 |
dna amplification | 12 |
cut site | 12 |
uniformly labeled | 12 |
life technologies | 12 |
pcr reaction | 12 |
primers used | 12 |
theophylline aptamer | 12 |
host cells | 12 |
mrna pseudoknot | 12 |
final assay | 12 |
refseq records | 12 |
virus genomes | 12 |
phenol chloroform | 12 |
sliding window | 12 |
acting rna | 12 |
full length | 12 |
associated proteins | 12 |
frameshifting rna | 12 |
trigger ifn | 12 |
supplementary tables | 12 |
highly similar | 12 |
inhibitory activity | 12 |
terminal repeat | 12 |
nsp nsp | 12 |
specific conjugate | 12 |
fidelity modulation | 12 |
template switching | 12 |
control sequence | 12 |
class ii | 12 |
wobble position | 12 |
rna metabolism | 12 |
protein expression | 12 |
ribosomes stalled | 12 |
gfp minigenome | 12 |
terminal residues | 12 |
protein complexes | 12 |
protein family | 12 |
rna sample | 12 |
nmr studies | 12 |
viral infections | 12 |
ribosomal subunit | 12 |
compare lanes | 12 |
elongation cycle | 12 |
type levels | 12 |
viral species | 12 |
binding buffer | 12 |
prf occurs | 12 |
sox targeting | 12 |
rna genomes | 12 |
cpv vp | 12 |
terminal edge | 12 |
nuclear antigen | 12 |
frameshift efficiencies | 12 |
treated cells | 12 |
cell leukemia | 12 |
also supplementary | 12 |
degradometer software | 12 |
plant viruses | 12 |
induced frameshifting | 12 |
untranslated regions | 12 |
sl sl | 12 |
slippery codon | 12 |
naturally occurring | 12 |
rate constants | 12 |
site conservation | 12 |
virus infection | 12 |
reporter assay | 12 |
rna stem | 12 |
viral protein | 12 |
trna movement | 11 |
site rna | 11 |
stimulatory structure | 11 |
polymerase iii | 11 |
viral rdrp | 11 |
sequence records | 11 |
compressed sensing | 11 |
rich sequences | 11 |
high sensitivity | 11 |
amplification using | 11 |
frame control | 11 |
vitro translation | 11 |
structured rna | 11 |
allowed us | 11 |
normalized chi | 11 |
highly efficient | 11 |
cpv capsid | 11 |
comparative analysis | 11 |
dna fragment | 11 |
downstream structure | 11 |
trna gly | 11 |
mechanical stability | 11 |
lna modifications | 11 |
positive rate | 11 |
hcv replication | 11 |
stimulatory element | 11 |
aa mutant | 11 |
antiviral therapy | 11 |
ibv pseudoknot | 11 |
will also | 11 |
infectious diseases | 11 |
superfamily genes | 11 |
programmed frameshifting | 11 |
extension activity | 11 |
rna substrate | 11 |
flow cytometry | 11 |
dependent manner | 11 |
structure may | 11 |
regulatory elements | 11 |
genome sequencing | 11 |
least three | 11 |
vero cells | 11 |
site closure | 11 |
translational termination | 11 |
mouse hepatitis | 11 |
antiviral sirnas | 11 |
rna modification | 11 |
nonstructural protein | 11 |
results show | 11 |
cell growth | 11 |
observations suggest | 11 |
located within | 11 |
trna accommodation | 11 |
terminal part | 11 |
trna species | 11 |
rdrp interface | 11 |
life sciences | 11 |
recent years | 11 |
complementary sequences | 11 |
protein interaction | 11 |
domain proteins | 11 |
sarcoma virus | 11 |
two separate | 11 |
mcm side | 11 |
coronavirus infectious | 11 |
dna molecules | 11 |
uga stop | 11 |
viral rnas | 11 |
nonspecific amplification | 11 |
partially double | 11 |
wobble uridine | 11 |
molecular interactions | 11 |
analysis using | 11 |
three independent | 11 |
switch hairpin | 11 |
prf efficiency | 11 |
activate ifn | 11 |
england biolabs | 10 |
target sequences | 10 |
viral sequence | 10 |
direct rna | 10 |
recent study | 10 |
ribosomal rnas | 10 |
trna phe | 10 |
increasing amounts | 10 |
positive events | 10 |
recoded genes | 10 |
quadruplex formation | 10 |
limited number | 10 |
rna element | 10 |
reporter mrna | 10 |
structural protein | 10 |
hairpin rna | 10 |
pseudoknot structures | 10 |
conserved among | 10 |
neuronal cell | 10 |
sequence motif | 10 |
complete genomes | 10 |
perkin elmer | 10 |
much higher | 10 |
technical errors | 10 |
antiviral mirnas | 10 |
rna sequencing | 10 |
mechanical explanation | 10 |
loaded onto | 10 |
biological replicates | 10 |
type pseudoknot | 10 |
loop region | 10 |
cell surface | 10 |
cultured cells | 10 |
frameshift sequence | 10 |
fold increase | 10 |
end labeled | 10 |
digital pcr | 10 |
unmodified sirna | 10 |
transcription elongation | 10 |
reaction conditions | 10 |
measured using | 10 |
mouse model | 10 |
containing trna | 10 |
genome analysis | 10 |
gene products | 10 |
type cells | 10 |
helix destabilization | 10 |
chop genes | 10 |
loop structures | 10 |
reporter plasmids | 10 |
also shown | 10 |
rna helices | 10 |
relative copy | 10 |
proteins involved | 10 |
data show | 10 |
cancer cells | 10 |
using either | 10 |
internal loop | 10 |
less efficient | 10 |
input set | 10 |
critical role | 10 |
regulatory sequences | 10 |
determined using | 10 |
dna structures | 10 |
relative expression | 10 |
snp genotyping | 10 |
thermo scientific | 10 |
sodium dodecyl | 10 |
ribosome aligning | 10 |
rna profiles | 10 |
moloney murine | 10 |
error bars | 10 |
efficient frameshifting | 10 |
rna structural | 10 |
capture probes | 10 |
mrna destabilizing | 10 |
chemical shift | 10 |
public health | 10 |
rdrp core | 10 |
rrna transcript | 10 |
conventional primers | 10 |
pseudoknot stem | 10 |
translation reactions | 10 |
morpholino oligomers | 10 |
viral processes | 10 |
denaturation temperature | 10 |
nucleotide polymorphisms | 10 |
nmr experiments | 10 |
labeled samples | 10 |
two rna | 10 |
drug discovery | 10 |
exosome containing | 10 |
pcr analysis | 10 |
tertiary structures | 10 |
endonucleolytic cleavage | 10 |
annotation pipeline | 10 |
control sample | 10 |
acid sequences | 10 |
bicistronic reporter | 10 |
inhibitor cocktail | 10 |
rna sequences | 10 |
growth factor | 10 |
translation termination | 10 |
hhge per | 10 |
polyacrylamide gels | 10 |
pseudoknot function | 10 |
dna oligonucleotides | 10 |
rt efficiency | 10 |
bacterial lineages | 10 |
range rna | 10 |
loop sequence | 10 |
magnetic particles | 10 |
phylogenetic tree | 10 |
bulk reactions | 10 |
coronavirus hku | 10 |
dna mix | 10 |
first base | 10 |
high level | 10 |
rna targets | 10 |
modification deficiency | 10 |
experimental data | 10 |
studies using | 10 |
mrna pseudoknots | 10 |
structurally aligned | 10 |
mature peptide | 10 |
reaction buffer | 10 |
cell proliferation | 10 |
distance rna | 10 |
distantly related | 10 |
new insights | 10 |
melting temperature | 10 |
sequence retrieval | 10 |
reticulum stress | 10 |
trna binding | 10 |
sequence composition | 9 |
large rnas | 9 |
structure similarity | 9 |
replication protein | 9 |
rabbit reticulocyte | 9 |
target molecules | 9 |
short hairpin | 9 |
rrna decay | 9 |
different levels | 9 |
subunit genes | 9 |
decoding rules | 9 |
upstream regions | 9 |
cognate codons | 9 |
protein structure | 9 |
bars represent | 9 |
innate immune | 9 |
silencing activity | 9 |
hairpin structure | 9 |
reverse genetics | 9 |
drug resistance | 9 |
oxford nanopore | 9 |
target engagement | 9 |
expressing cells | 9 |
frame codons | 9 |
codon context | 9 |
like structures | 9 |
vivo studies | 9 |
ucc uga | 9 |
may lead | 9 |
ethidium bromide | 9 |
rna duplex | 9 |
sequence databases | 9 |
dna sample | 9 |
proteolytic processing | 9 |
acid binding | 9 |
host factors | 9 |
flock house | 9 |
dex xxy | 9 |
comparative genomics | 9 |
mirna constructs | 9 |
true positive | 9 |
restriction sites | 9 |
chemical probe | 9 |
dna repair | 9 |
protein coding | 9 |
creb atf | 9 |
stimulatory rnas | 9 |
ii transcription | 9 |
signal peptide | 9 |
clef fold | 9 |
pcr using | 9 |
cellular stress | 9 |
protein complex | 9 |
sk snrnp | 9 |
gel filtration | 9 |
stimulatory signal | 9 |
immediately downstream | 9 |
bip promoter | 9 |
transcription factors | 9 |
melting curves | 9 |
gov genome | 9 |
mcf cells | 9 |
frameshift event | 9 |
terminal transferase | 9 |
rna molecules | 9 |
transcriptional regulation | 9 |
medium containing | 9 |
frame aa | 9 |
search interface | 9 |
house virus | 9 |
sirna sequences | 9 |
lna substitutions | 9 |
ebov minigenome | 9 |
pestivirus ns | 9 |
rna folding | 9 |
phosphate group | 9 |
rna sequence | 9 |
pol frameshift | 9 |
sense end | 9 |
recombination junction | 9 |
transcriptional slippage | 9 |
viral dna | 9 |
low abundance | 9 |
myotonic dystrophy | 9 |
coli strain | 9 |
nidovirus helicase | 9 |
cleavage products | 9 |
mm theophylline | 9 |
ternary complex | 9 |
dna substrate | 9 |
coronavirus nsp | 9 |
sequence identity | 9 |
residues within | 9 |
rous sarcoma | 9 |
dna motifs | 9 |
strand annealing | 9 |
uuu uua | 9 |
immunity protein | 9 |
mouth disease | 9 |
rna fragments | 9 |
biologically active | 9 |
time dlamp | 9 |
like module | 9 |
frame stop | 9 |
rna motifs | 9 |
standard deviations | 9 |
data analysis | 9 |
nonstructural proteins | 9 |
sulfolobus solfataricus | 9 |
insertion sequence | 9 |
ornithine decarboxylase | 9 |
rna cleavage | 9 |
previously published | 9 |
computational analysis | 9 |
theophylline treatment | 9 |
ribosome biogenesis | 9 |
frameshifting ribosomal | 9 |
nuclear ribonucleoprotein | 9 |
reference gene | 9 |
molecular mechanisms | 9 |
increased frameshifting | 9 |
entry tunnel | 9 |
gene pages | 9 |
recombinant protein | 9 |
metabolic pathways | 9 |
broad range | 9 |
type ii | 9 |
ebov trailer | 9 |
subgenomic rna | 9 |
dnax gene | 9 |
promoter region | 9 |
standard deviation | 9 |
hel domains | 9 |
correct stoichiometric | 9 |
recoding site | 9 |
first nucleotide | 9 |
virus ns | 9 |
shift assay | 9 |
probing analysis | 9 |
frameshifting efficiencies | 9 |
ntp entry | 9 |
rna helicase | 9 |
fetal bovine | 9 |
metadata terms | 9 |
trna selection | 9 |
extended duplex | 8 |
number variation | 8 |
based detection | 8 |
mm nh | 8 |
dna oligonucleotide | 8 |
mrna abundance | 8 |
rs interaction | 8 |
programmed frameshift | 8 |
response element | 8 |
data support | 8 |
using two | 8 |
associated coronavirus | 8 |
total rnas | 8 |
protease inhibitors | 8 |
imino proton | 8 |
previous observations | 8 |
well conserved | 8 |
typhoon fla | 8 |
structural analysis | 8 |
hash function | 8 |
sequence elements | 8 |
minor groove | 8 |
tar rna | 8 |
retrieved sequences | 8 |
web server | 8 |
diarrhea virus | 8 |
highly variable | 8 |
uaa stop | 8 |
oxygen species | 8 |
may affect | 8 |
multivalent ligands | 8 |
nef coding | 8 |
disulfide bond | 8 |
human telomerase | 8 |
prf signals | 8 |
shows little | 8 |
helix substrate | 8 |
denaturing polyacrylamide | 8 |
stoichiometric ratios | 8 |
steady state | 8 |
degradation products | 8 |
genbank accession | 8 |
disease virus | 8 |
minigene construct | 8 |
associated herpesvirus | 8 |
kcl mm | 8 |
sample preparation | 8 |
investigate whether | 8 |
cuug pk | 8 |
previously shown | 8 |
polynucleotide kinase | 8 |
input sequences | 8 |
potential therapeutic | 8 |
computational binding | 8 |
closing base | 8 |
myc promoter | 8 |
fold change | 8 |
living cells | 8 |
coat protein | 8 |
deacylated trna | 8 |
binding specificity | 8 |
human diseases | 8 |
isolation source | 8 |
receptor subunit | 8 |
respiratory syncytial | 8 |
alanine substitution | 8 |
fluorescence intensity | 8 |
two copies | 8 |
error rates | 8 |
sequence read | 8 |
viral refseq | 8 |
previously observed | 8 |
plasmid dna | 8 |
template sequence | 8 |
quantitative chip | 8 |
mm sodium | 8 |
frameshifted product | 8 |
much lower | 8 |
capsid protein | 8 |
mechanical unfolding | 8 |
high throughput | 8 |
fluorescent protein | 8 |
min sketch | 8 |
splicing regulatory | 8 |
solfataricus dnag | 8 |
given sequence | 8 |
transferase activity | 8 |
molecular dynamics | 8 |
potential role | 8 |
examine whether | 8 |
cdna library | 8 |
spacer region | 8 |
essential role | 8 |
close proximity | 8 |
hek cells | 8 |
esterified methyl | 8 |
hj secondary | 8 |
protein families | 8 |
ebna mrna | 8 |
frameshift sites | 8 |
physicochemical properties | 8 |
mediated mrna | 8 |
structural information | 8 |
sequence classification | 8 |
biologically relevant | 8 |
messenger rnas | 8 |
point mutation | 8 |
plant virus | 8 |
exonuclease activity | 8 |
viral particles | 8 |
two independent | 8 |
telomerase inhibition | 8 |
present study | 8 |
heterogeneous nuclear | 8 |
uridine modifications | 8 |
higher level | 8 |
translation products | 8 |
standard error | 8 |
amersham biosciences | 8 |
polymerase structure | 8 |
genome browser | 8 |
third stem | 8 |
triplex structures | 8 |
oligonucleotide primers | 8 |
viral infectivity | 8 |
telomeric dna | 8 |
high concentrations | 8 |
inner capsids | 8 |
sox cleavage | 8 |
also provides | 8 |
transcriptional activation | 8 |
regulate gene | 8 |
minimal ibv | 8 |
ethanol precipitation | 8 |
syncytial virus | 8 |
hash values | 8 |
terminal amino | 8 |
modification deficient | 8 |
dsrna viruses | 8 |
sindbis virus | 8 |
transposable elements | 8 |
nonsense suppression | 8 |
using standard | 8 |
dependent transcription | 8 |
mrna splicing | 8 |
probabilistic data | 8 |
data collection | 8 |
reporter gene | 8 |
second pmo | 8 |
parp catalytic | 8 |
immune evasion | 8 |
conformational changes | 8 |
recently developed | 8 |
signal intensity | 8 |
specific rna | 8 |
identical sequences | 8 |
significant decrease | 8 |
tris ph | 8 |
real time | 8 |
authors thank | 8 |
dataset containing | 8 |
rna helicases | 8 |
hairpin rnas | 8 |
fold higher | 8 |
genome viruses | 8 |
defective genomes | 8 |
multiple alignments | 8 |
openarray tm | 8 |
cov rna | 8 |
blast search | 8 |
enzymatic mutation | 8 |
single stranded | 8 |
rna interaction | 8 |
japanese encephalitis | 8 |
genetic diversity | 8 |
hcv ns | 8 |
noesy walk | 8 |
target dna | 8 |
transcription termination | 8 |
predicted structure | 8 |
two mutants | 8 |
reactive oxygen | 8 |
vitro transcribed | 8 |
rules enriches | 8 |
budding yeast | 8 |
destabilizing elements | 8 |
dpo system | 8 |
molar ratio | 8 |
previous work | 8 |
much larger | 8 |
wobble nucleoside | 8 |
two major | 8 |
illumina results | 8 |
coronavirus rna | 8 |
sample set | 8 |
helix substrates | 8 |
promote efficient | 8 |
specific target | 8 |
complementary oligonucleotides | 8 |
kissing interactions | 8 |
frameshifting frequency | 8 |
frameshifting activity | 8 |
sequence comparisons | 8 |
cov pseudoknot | 8 |
capillary electrophoresis | 8 |
stem loop | 8 |
results obtained | 8 |
bioinformatics resource | 8 |
genome segments | 8 |
structural rearrangements | 8 |
plasmodium falciparum | 8 |
rdrp palm | 8 |
duplex dna | 8 |
two trnas | 8 |
single copy | 8 |
cell epitopes | 8 |
metagenomic data | 8 |
rotavirus nsp | 8 |
cancer cell | 8 |
antiviral agents | 8 |
two genes | 8 |
new data | 8 |
home page | 8 |
genomic sequences | 8 |
antiviral mirna | 8 |
peak heights | 8 |
little correlation | 8 |
primer pairs | 8 |
also tested | 8 |
culture supernatant | 8 |
coronavirus genomes | 8 |
primer set | 8 |
time course | 8 |
sirna duplex | 8 |
beet western | 8 |
high error | 8 |
data types | 8 |
recombination event | 8 |
stem length | 8 |
simian retrovirus | 8 |
specific conjugates | 7 |
integrated dna | 7 |
stimulatory signals | 7 |
luciferase reporters | 7 |
batch sequence | 7 |
rich sequence | 7 |
rt codon | 7 |
solution containing | 7 |
programmed cell | 7 |
gibbs free | 7 |
labeled poly | 7 |
highly associated | 7 |
ncbi taxonomy | 7 |
quadruplex nucleic | 7 |
mammalian riboswitch | 7 |
viral diarrhea | 7 |
imagequant software | 7 |
exclusion chromatography | 7 |
enzymatic activities | 7 |
heptameric patterns | 7 |
chloroform extraction | 7 |
randomized nrmegs | 7 |
refseq genome | 7 |
significant difference | 7 |
reading phase | 7 |
analysis tools | 7 |
induce ifn | 7 |
arg codon | 7 |
ensure synthesis | 7 |
may occur | 7 |
first time | 7 |
hydrogen peroxide | 7 |
using rna | 7 |
yeast ribosomal | 7 |
small number | 7 |
eukaryotic ribosome | 7 |
heat shock | 7 |
replicase gene | 7 |
target specificity | 7 |
previously identified | 7 |
events occurring | 7 |
nucleotide substitutions | 7 |
elongation complex | 7 |
gene regulation | 7 |
two sets | 7 |
hairpin stem | 7 |
selenocysteine insertion | 7 |
medicinal chemistry | 7 |
large rna | 7 |
er stress | 7 |
aptamer stem | 7 |
modified peptides | 7 |
luciferase assays | 7 |
cdna synthesis | 7 |
nucleotide position | 7 |
middle east | 7 |
binding domains | 7 |
mcm ucu | 7 |
gene sequences | 7 |
functional role | 7 |
new segment | 7 |
mrna degradation | 7 |
forming sequence | 7 |
trna gln | 7 |
histocompatibility complex | 7 |
rna bands | 7 |
frameshift assay | 7 |
potential target | 7 |
data mining | 7 |
host shutoff | 7 |
likely due | 7 |
frameshift assays | 7 |
superfamily neighborhoods | 7 |
rna hairpin | 7 |
min incubation | 7 |
dna sequence | 7 |
sequence profile | 7 |
different strains | 7 |
sequence datasets | 7 |
among different | 7 |
hyperosmotic shock | 7 |
ncl binding | 7 |
taxonomic classification | 7 |
frameshifting site | 7 |
expression vectors | 7 |
similar results | 7 |
protein database | 7 |
mrna structure | 7 |
shrna expression | 7 |
coding genes | 7 |
agarose gels | 7 |
freely available | 7 |
reporter assays | 7 |
minion sequencing | 7 |
rt site | 7 |
mdx mouse | 7 |
virus genomic | 7 |
translation system | 7 |
human breast | 7 |
sequencing efforts | 7 |
predicted free | 7 |
chemical shifts | 7 |
results indicated | 7 |
luciferase genes | 7 |
genome neighbor | 7 |
alternative reading | 7 |
phase ii | 7 |
vast majority | 7 |
pcr reactions | 7 |
human genes | 7 |
efficient coronavirus | 7 |
structure maps | 7 |
detection capture | 7 |
rna domain | 7 |
see materials | 7 |
primary screening | 7 |
experimentally validated | 7 |
immune system | 7 |
highly divergent | 7 |
ribosylate phosphorylated | 7 |
detection method | 7 |
comparative sequence | 7 |
accession number | 7 |
frameshifter rna | 7 |
accession numbers | 7 |
human disease | 7 |
independent manner | 7 |
expressing wild | 7 |
frameshift stimulation | 7 |
expression level | 7 |
control construct | 7 |
stranded nucleic | 7 |
unpublished data | 7 |
higher affinity | 7 |
sample buffer | 7 |
downstream stimulatory | 7 |
seed length | 7 |
target rna | 7 |
fever virus | 7 |
stem formation | 7 |
linear relationship | 7 |
scientific community | 7 |
grown overnight | 7 |
cellular toxicity | 7 |
eukaryotic mrna | 7 |
widely used | 7 |
pseudoknot required | 7 |
dna templates | 7 |
different positions | 7 |
growth inhibition | 7 |
mutant sirt | 7 |
coli dnax | 7 |
known binding | 7 |
search page | 7 |
primer design | 7 |
kinase activity | 7 |
uag stop | 7 |
enriches gene | 7 |
rt stop | 7 |
binding assays | 7 |
nuclear magnetic | 7 |
specific amplicons | 7 |
results demonstrate | 7 |
nucleotide polymorphism | 7 |
similar pattern | 7 |
conjugates containing | 7 |
sequence diversity | 7 |
terminal residue | 7 |
rna oligonucleotide | 7 |
containing archaea | 7 |
restriction enzyme | 7 |
start codon | 7 |
methyl group | 7 |
structural elements | 7 |
protein kinase | 7 |
ortholog group | 7 |
bacterial toxin | 7 |
two complementary | 7 |
ebov genome | 7 |
reporter genes | 7 |
rna aptamer | 7 |
hela cells | 7 |
human coronavirus | 7 |
specific detection | 7 |
final extension | 7 |
antimicrobial peptides | 7 |
dna microarrays | 7 |
sars pseudoknot | 7 |
ctd phosphorylation | 7 |
conformational change | 7 |
coronaviruses ensure | 7 |
cellular gene | 7 |
stimulating pseudoknot | 7 |
universal hash | 7 |
murine cytomegalovirus | 7 |
dna polymerases | 7 |
rrna processing | 7 |
type rna | 7 |
culture cells | 7 |
dna complex | 7 |
exonic splicing | 7 |
apoptotic stimuli | 7 |
estimated using | 7 |
structure analysis | 7 |
cellular protein | 7 |
group coronaviruses | 7 |
aligned sequences | 7 |
significant amount | 7 |
mrna sequences | 7 |
positively charged | 7 |
page gel | 7 |
crick base | 7 |
sensing matrix | 7 |
toxin proteins | 7 |
unwinding activity | 7 |
based multiplex | 7 |
frameshift protein | 7 |
tagged proteins | 7 |
dna aptamers | 7 |
respiratory viruses | 7 |
type rpl | 7 |
mcm group | 7 |
cancer samples | 7 |
pluc cells | 7 |
sequences based | 7 |
like structure | 7 |
magnetic resonance | 7 |
luc vector | 7 |
read archive | 7 |
final volume | 7 |
translational control | 7 |
spectral crowding | 7 |
read segment | 7 |
sequence motifs | 7 |
metal ions | 7 |
sequence containment | 7 |
skipping activity | 7 |
gtp hydrolysis | 7 |
gag gag | 7 |
bacterial genomes | 7 |
occupancy status | 7 |
fluorescence reporter | 7 |
direct sequencing | 7 |
circular dichroism | 7 |
different groups | 7 |
dystrophin expression | 7 |
conserved motif | 7 |
replication initiation | 7 |
therapeutic applications | 7 |
noesy spectra | 7 |
unique domain | 7 |
recent studies | 7 |
ebna synthesis | 7 |
dnase i | 7 |
rho cells | 7 |
upper panel | 7 |
sepharose beads | 7 |
bovine viral | 7 |
immediately upstream | 7 |
least two | 7 |
time point | 7 |
acuucc pk | 7 |
transcription initiation | 7 |
site selection | 7 |
rin system | 7 |
efficient frameshift | 7 |
hydroxyl acylation | 7 |
arg mcm | 7 |
lesser extent | 7 |
animal models | 7 |
using primers | 7 |
promoter regions | 7 |
yeast gene | 7 |
remaining nucleotides | 7 |
database search | 7 |
quantitative analysis | 7 |
potentially form | 7 |
viral communities | 7 |
translating ribosomes | 7 |
nanopore sequencing | 7 |
lower aptamer | 7 |
manually curated | 7 |
base pairings | 7 |
cognate trnas | 7 |
better understand | 7 |
golden mean | 7 |
rna extraction | 7 |
dnag proteins | 7 |
possible role | 7 |
supt cells | 7 |
using lipofectamine | 7 |
green fluorescent | 7 |
expression system | 7 |
increased expression | 7 |
reversible adp | 7 |
loading buffer | 7 |
final sirna | 7 |
containing exosome | 7 |
yeast apoptosis | 7 |
may provide | 7 |
rna stability | 7 |
sox protein | 7 |
well annotated | 7 |
specific recognition | 7 |
dependent polymerases | 7 |
dpo primer | 7 |
wt ltr | 7 |
eukaryotic systems | 7 |
different types | 7 |
expression profiling | 7 |
among rna | 7 |
fold lower | 7 |
healthcare life | 7 |
rna fragmentation | 7 |
east respiratory | 7 |
complete loss | 7 |
core region | 7 |
competent cells | 7 |
rna pull | 7 |
ethanol precipitated | 7 |
phosphorylated ssrna | 7 |
sequence using | 6 |
guide strand | 6 |
gene page | 6 |
expression analysis | 6 |
novel rna | 6 |
frameshifting signals | 6 |
dependent activation | 6 |
dendritic cells | 6 |
length protein | 6 |
organism category | 6 |
annealed aon | 6 |
predictive value | 6 |
frameshifting programmed | 6 |
ncbi viral | 6 |
heptanucleotide sequence | 6 |
master mix | 6 |
frameshift motif | 6 |
sirnas targeting | 6 |
lung tissue | 6 |
data bank | 6 |
rna probe | 6 |
deletion mutant | 6 |
ectopic expression | 6 |
mb ccc | 6 |
kindly provided | 6 |
technical assistance | 6 |
mobile genes | 6 |
readthrough protein | 6 |
ncbi reference | 6 |
regulatory roles | 6 |
chemical probing | 6 |
sequence homology | 6 |
virus life | 6 |
structural changes | 6 |
constructed using | 6 |
pol expression | 6 |
translational accuracy | 6 |
ring finger | 6 |
well plate | 6 |
chlamydia trachomatis | 6 |
sense primer | 6 |
associated factor | 6 |
nucleotide resolution | 6 |
ribosomal movement | 6 |
may form | 6 |
cd expression | 6 |
diploid copy | 6 |
cells grown | 6 |
rb repeats | 6 |
amplification event | 6 |
initiation site | 6 |
structures may | 6 |
oxidative agents | 6 |
base triples | 6 |
enzymatic activity | 6 |
genetic decoding | 6 |
processed using | 6 |
obtained using | 6 |
analysis software | 6 |
dpo primers | 6 |
digital arrays | 6 |
breast cancers | 6 |
minion nanopore | 6 |
codon recognition | 6 |
long reads | 6 |
using hrm | 6 |
also noted | 6 |
allele allele | 6 |
heteropolymeric tail | 6 |
variable mode | 6 |
fold less | 6 |
short interfering | 6 |
conserved structure | 6 |
chemical exchange | 6 |
nar gkm | 6 |
nar gkq | 6 |
specific probe | 6 |
cell nucleus | 6 |
reference databases | 6 |
click chemistry | 6 |
first strand | 6 |
duplex unwinding | 6 |
complete set | 6 |
sufu superfamily | 6 |
query time | 6 |
multiplex detection | 6 |
cov genome | 6 |
increased affinity | 6 |
catalytically inactive | 6 |
rdrp fidelity | 6 |
nascent peptide | 6 |
targeting hiv | 6 |
cdk activity | 6 |
mature mirna | 6 |
genomic rnas | 6 |
rna tertiary | 6 |
genbank records | 6 |
quality metrics | 6 |
assays using | 6 |
rtsl ld | 6 |
expression plasmid | 6 |
located upstream | 6 |
data obtained | 6 |
quality assessment | 6 |
parp fl | 6 |
antigen presentation | 6 |
analysis resource | 6 |
western yellows | 6 |
may contribute | 6 |
hairpin constructs | 6 |
annealing temperature | 6 |
binding channel | 6 |
yeast trna | 6 |
calf serum | 6 |
hairpin construct | 6 |
luciferase activities | 6 |
using imagequant | 6 |
rna decay | 6 |
novo synthesis | 6 |
asf expression | 6 |
hairpin structures | 6 |
bacterial species | 6 |
primary determinant | 6 |
possible explanation | 6 |
molar excess | 6 |
like activity | 6 |
gkm sha | 6 |
structure downstream | 6 |
dna helicase | 6 |
major histocompatibility | 6 |
analysis indicated | 6 |
salt buffer | 6 |
reporter mrnas | 6 |
modified wobble | 6 |
relatively small | 6 |
metagenomic sequence | 6 |
also includes | 6 |
molecular replacement | 6 |
buffer mm | 6 |
redundant sequence | 6 |
transcribed using | 6 |
rdrp intra | 6 |
much smaller | 6 |
mature peptides | 6 |
terminal end | 6 |
wt sequence | 6 |
rna signals | 6 |
restriction site | 6 |
vol vol | 6 |
cytoplasmic polyhedrosis | 6 |
gkq sha | 6 |
dsrna replication | 6 |
triple helix | 6 |
following conditions | 6 |
relative abundance | 6 |
positive bacteria | 6 |
human cov | 6 |
recoding event | 6 |
arg ccu | 6 |
proviral genome | 6 |
two cis | 6 |
provide new | 6 |
signaling pathway | 6 |
polycistronic transcript | 6 |
wide variety | 6 |
coronavirus sequences | 6 |
mer product | 6 |
lna modification | 6 |
certain cases | 6 |
movement impeded | 6 |
standard decoding | 6 |
leader panhandle | 6 |
washed twice | 6 |
ie heptameric | 6 |
aaa aag | 6 |
cognate aminoacyl | 6 |
helical domain | 6 |
complementary rna | 6 |
ii occupancy | 6 |
rna dna | 6 |
gaaa tetraloop | 6 |
recently reported | 6 |
drug development | 6 |
background dna | 6 |
pcr assays | 6 |
bd biosciences | 6 |
edta ph | 6 |
mrna synthesis | 6 |
unless otherwise | 6 |
bp stem | 6 |
minigenome assay | 6 |
metabolic pathway | 6 |
well characterized | 6 |
viral macrodomains | 6 |
glu mcm | 6 |
standardized metadata | 6 |
see table | 6 |
human embryonic | 6 |
genome rna | 6 |
mutation detection | 6 |
mirna polycistron | 6 |
structural insights | 6 |
protein data | 6 |
studying recoding | 6 |
profile comparisons | 6 |
bacterial insertion | 6 |
drosophila melanogaster | 6 |
containing reporter | 6 |
peptides binding | 6 |
sirna expression | 6 |
superfamily gene | 6 |
hairpin formation | 6 |
metagenomic sequencing | 6 |
mutant sequences | 6 |
stimulate frameshifting | 6 |
led us | 6 |
quadruplex ligand | 6 |
reporter constructs | 6 |
kcal mole | 6 |
snrnp complex | 6 |
important target | 6 |
may represent | 6 |
binding properties | 6 |
incubated overnight | 6 |
regulatory protein | 6 |
sg mrnas | 6 |
alkaline hydrolysis | 6 |
positions along | 6 |
radiolabeled rna | 6 |
illumina sequencing | 6 |
biotinylated rna | 6 |
pk mutant | 6 |
triple residue | 6 |
mbp alone | 6 |
sequence inversion | 6 |
targeting rna | 6 |
hnh domains | 6 |
frameshift stimulators | 6 |
ncm group | 6 |
gold nanoparticles | 6 |
magnetic particle | 6 |
sequencing errors | 6 |
pseudoknots promote | 6 |
human tissues | 6 |
profile searches | 6 |
also performed | 6 |
mm pmsf | 6 |
coding gap | 6 |
less archaea | 6 |
patterns clusters | 6 |
based approach | 6 |
predicted rna | 6 |
family reoviridae | 6 |
gene neighborhoods | 6 |
fhv genome | 6 |
comparative study | 6 |
sequences containing | 6 |
cellular rna | 6 |
relatively high | 6 |
protein annotation | 6 |
sigma aldrich | 6 |
hash table | 6 |
coronavirus infection | 6 |
rna strand | 6 |
evolutionarily conserved | 6 |
rna transcripts | 6 |
selective amplification | 6 |
gly mcm | 6 |
tumor growth | 6 |
available online | 6 |
applied science | 6 |
sequence variation | 6 |
ibv infection | 6 |
native polyacrylamide | 6 |
structural similarity | 6 |
viral life | 6 |
polyamine levels | 6 |
media containing | 6 |
coding rnas | 6 |
lys codon | 6 |
mammalian antizyme | 6 |
sequence search | 6 |
higher concentrations | 6 |
trna glu | 6 |
parp cat | 6 |
whether vp | 6 |
frameshifting characterization | 6 |
virus polymerase | 6 |
containing mg | 6 |
rna modifications | 6 |
cell lysate | 6 |
per cell | 6 |
accessed march | 6 |
red lines | 6 |
hnh fold | 6 |
dystrophin restoration | 6 |
specific primers | 6 |
also present | 6 |
site specificity | 6 |
frameshift errors | 6 |
systematic analysis | 6 |
direct evidence | 6 |
cellular proteins | 6 |
sequences within | 6 |
function relationships | 6 |
containing complex | 6 |
functional genomic | 6 |
negatively charged | 6 |
efficient programmed | 6 |
isotopically labeled | 6 |
nt upstream | 6 |
chromatin condensation | 6 |
two distinct | 6 |
virus gag | 6 |
increase efficiency | 6 |
search results | 6 |
molecules targeting | 6 |
dodecyl sulfate | 6 |
acid chaperone | 6 |
chip assays | 6 |
functional importance | 6 |
pcr step | 6 |
cdi toxins | 6 |
max rate | 6 |
encoded rna | 6 |
roche applied | 6 |
expressing flag | 6 |
semliki forest | 6 |
stability assays | 6 |
nuclear protein | 6 |
differential melting | 6 |
modification systems | 6 |
complex containing | 6 |
structural data | 6 |
codon redefinition | 6 |
purified ncl | 6 |
hiv infection | 6 |
test codons | 6 |
also show | 6 |
site predictions | 6 |
antisense primer | 6 |
xxz zzn | 6 |
atp utp | 6 |
stimulating rna | 6 |
genome structural | 6 |
kinetic pathways | 6 |
dystrophy type | 6 |
cellular components | 6 |
raw data | 6 |
roc curves | 6 |
genomic sequence | 6 |
like protease | 6 |
rnp complex | 6 |
data type | 6 |
pyrimidine nucleotides | 6 |
serum albumin | 6 |
randomly chosen | 6 |
spacing distances | 6 |
hydrogen bonding | 6 |
culture medium | 6 |
pseudoknot enhance | 6 |
mrna entrance | 6 |
functional genomics | 6 |
dna synthesis | 6 |
fold wild | 6 |
truncated form | 6 |
ml reaction | 6 |
rease fold | 6 |
type samples | 6 |
enhance mechanical | 6 |
represent means | 6 |
metagenomic samples | 6 |
human herpesvirus | 6 |
ray diffraction | 6 |
read sequencing | 6 |
electrophoretic mobility | 6 |
mm mn | 6 |
see http | 6 |
signal processing | 6 |
ssrna cy | 6 |
gene encoding | 6 |
serial passage | 6 |
mutagenesis kit | 6 |
mrna tension | 6 |
standard rna | 6 |
gene family | 6 |
overall thermodynamic | 6 |
central role | 6 |
starting template | 6 |
site may | 6 |
family members | 6 |
test construct | 6 |
degradation assays | 6 |
reaction containing | 6 |
free water | 6 |
type ribosomes | 6 |
recognition motif | 6 |
illumina miseq | 6 |
stable rna | 6 |
mrna fragments | 6 |
sequence divergence | 6 |
coli cells | 6 |
viral lifecycle | 6 |
embedded within | 6 |
mcm ucc | 6 |
pol ratio | 6 |
one nucleotide | 6 |
induce ribosomal | 6 |
cell cultures | 6 |
mer peptides | 6 |
endogenous xbp | 6 |
structural variation | 6 |
sequenced genomes | 6 |
throughput sequencing | 6 |
marburg virus | 6 |
consensus sequence | 6 |
ascorbic acid | 6 |
high accuracy | 6 |
cypb expression | 6 |
hill coefficient | 6 |
large ribosomal | 6 |
acting signals | 6 |
conditions tested | 6 |
human telomeric | 6 |
signal peptides | 6 |
significantly reduced | 6 |
structurally similar | 6 |
rna recognition | 6 |
stralsv algorithm | 6 |
nt fragment | 6 |
rnase inhibitor | 6 |
detected using | 6 |
replication complex | 6 |
ribosomal subunits | 6 |
capsid proteins | 6 |
immune responses | 6 |
primary sequence | 6 |
direct role | 6 |
rrm domain | 6 |
using real | 6 |
yet another | 6 |
translational fidelity | 6 |
hiv inhibiting | 6 |
oligonucleotide probes | 6 |
mrna channel | 6 |
spaced seeds | 6 |
stimulatory effect | 6 |
done using | 6 |
hnh endovii | 6 |
transfected ft | 6 |
several viruses | 6 |
signal transduction | 6 |
parp family | 6 |
flavivirus ns | 6 |
recombination junctions | 6 |
abi prism | 6 |
growth kinetics | 6 |
missense errors | 6 |
structural probing | 6 |
polyhedrosis virus | 6 |
regulatory role | 6 |
high efficiency | 6 |
mrna structures | 6 |
surface proteins | 6 |
extraction kit | 5 |
nmd pathway | 5 |
highly structured | 5 |
yeast strains | 5 |
default parameters | 5 |
human genomic | 5 |
mutually exclusive | 5 |
hel domain | 5 |
trna anticodon | 5 |
optimal fidelity | 5 |
sars virus | 5 |
assay time | 5 |
dna ends | 5 |
noncoding rna | 5 |
amplification reactions | 5 |
annealing temperatures | 5 |
cellular processes | 5 |
structural polyprotein | 5 |
like protein | 5 |
bulk reaction | 5 |
previously characterized | 5 |
menu bar | 5 |
leader interaction | 5 |
control samples | 5 |
rdrp attenuation | 5 |
canonical base | 5 |
ifn response | 5 |
three samples | 5 |
bip promoters | 5 |
also showed | 5 |
located downstream | 5 |
polynucleotide phosphorylase | 5 |
genotyping pcr | 5 |
free ld | 5 |
ribosylate rna | 5 |
mediated antiviral | 5 |
yellow dwarf | 5 |
quantitative proteomics | 5 |
specific amplificaiton | 5 |
frameshift motifs | 5 |
global architecture | 5 |
different species | 5 |
genome records | 5 |
environmental conditions | 5 |
long read | 5 |
reactions containing | 5 |
theophylline binding | 5 |
vector using | 5 |
mean fluorescence | 5 |
ntd deletion | 5 |
known examples | 5 |
type sample | 5 |
wt rtsl | 5 |
codon ccc | 5 |
probe sets | 5 |
loop mutants | 5 |
current study | 5 |
comprehensive database | 5 |
cells infected | 5 |
either wild | 5 |
flow cytometer | 5 |
mutation screening | 5 |
activates transcription | 5 |
reactivity data | 5 |
intrinsically disordered | 5 |
analysis showed | 5 |
sequences upstream | 5 |
rt efficiencies | 5 |
leu uag | 5 |
loop rna | 5 |
model system | 5 |
targeting sirna | 5 |
filter parameter | 5 |
relatively low | 5 |
viral escape | 5 |
maximum number | 5 |
fusion proteins | 5 |
replicase proteins | 5 |
per chip | 5 |
ty assay | 5 |
identify novel | 5 |
enhanced conservation | 5 |
purified human | 5 |
specific reactions | 5 |
interacting proteins | 5 |
uga codons | 5 |
conformation change | 5 |
stop product | 5 |
na hpo | 5 |
erbb amplification | 5 |
noise ratio | 5 |
misincorporation assays | 5 |
quadruplex ligands | 5 |
protein partners | 5 |
ribosomal helicase | 5 |
frameshifting pseudoknots | 5 |
rich rna | 5 |
i molecules | 5 |
zinc ions | 5 |
well represented | 5 |
mediates rna | 5 |
gene function | 5 |
chemically synthesized | 5 |
good agreement | 5 |
tagged sirt | 5 |
nacl concentration | 5 |
resolution structures | 5 |
plasma cell | 5 |
gkr sha | 5 |
foster city | 5 |
phosphorylated rna | 5 |
using dna | 5 |
database issue | 5 |
hidden markov | 5 |
inducing frameshifting | 5 |
time melting | 5 |
chemical cross | 5 |
pseudoknots involved | 5 |
synthesized viral | 5 |
ms analysis | 5 |
yeast promoters | 5 |
pulse sequences | 5 |
mrna destabilization | 5 |
classical swine | 5 |
enzymatic synthesis | 5 |
degradation factor | 5 |
new twist | 5 |
yeast cell | 5 |
translational reading | 5 |
infectious disease | 5 |
rna probes | 5 |
viral discovery | 5 |
primer sets | 5 |
high conservation | 5 |
family proteins | 5 |
gel mobility | 5 |
mm iptg | 5 |
conserved rna | 5 |
highly expressed | 5 |
oncogene promoters | 5 |
supplementary material | 5 |
ibv pk | 5 |
slippage model | 5 |
drug design | 5 |
neu oncogene | 5 |
wash buffer | 5 |
based design | 5 |
scalar couplings | 5 |
high resolution | 5 |
trna pyl | 5 |
future studies | 5 |
gamma subunit | 5 |
neural network | 5 |
regions within | 5 |
viral growth | 5 |
dmem supplemented | 5 |
conventional primer | 5 |
gks sha | 5 |
sense rna | 5 |
microarray analysis | 5 |
different lengths | 5 |
assay development | 5 |
protein levels | 5 |
mrna target | 5 |
th percentile | 5 |
peptide sequence | 5 |
wt ns | 5 |
labeled rnas | 5 |
active mechanisms | 5 |
type sars | 5 |
based system | 5 |
transactivation domain | 5 |
fluorescent signal | 5 |
expected number | 5 |
interaction involving | 5 |
different mechanisms | 5 |
similarity search | 5 |
myostatin pathway | 5 |
expressing rpl | 5 |
lower case | 5 |
subcellular localization | 5 |
primers listed | 5 |
common feature | 5 |
different regions | 5 |
genomes project | 5 |
chronological ageing | 5 |
hyperosmotic stress | 5 |
gel purified | 5 |
agarose beads | 5 |
ibv frameshift | 5 |
endpoint detection | 5 |
american type | 5 |
two positions | 5 |
different functions | 5 |
several bacteria | 5 |
sco kpta | 5 |
time quantitative | 5 |
vrna replication | 5 |
poorly understood | 5 |
random projection | 5 |
sequence context | 5 |
wt construct | 5 |
opposite effect | 5 |
synthesis using | 5 |
functional significance | 5 |
agilent technologies | 5 |
protein production | 5 |
genomes using | 5 |
mammalian gene | 5 |
structurally conserved | 5 |
directly adjacent | 5 |
plasmids containing | 5 |
immunoprecipitated complexes | 5 |
hash value | 5 |
viral gene | 5 |
genomes resource | 5 |
low level | 5 |
independent translation | 5 |
latter case | 5 |
transduced cells | 5 |
kshv sox | 5 |
atf family | 5 |
open conformation | 5 |
conserved gene | 5 |
equal volume | 5 |
approach using | 5 |
rna tails | 5 |
morpholino oligomer | 5 |
diffraction data | 5 |
simultaneous detection | 5 |
computational approaches | 5 |
past decade | 5 |
frameshifting motif | 5 |
enrichment analyses | 5 |
antiviral effect | 5 |
expression plasmids | 5 |
solid red | 5 |
catalytic efficiency | 5 |
sparse recovery | 5 |
tomato bushy | 5 |
biotinylated beads | 5 |
bacillus subtilis | 5 |
min time | 5 |
vivo applications | 5 |
antiviral effects | 5 |
bond formation | 5 |
cardinality estimation | 5 |
superfamily helicase | 5 |
virus module | 5 |
protein factors | 5 |
mrna translation | 5 |
elongating ribosome | 5 |
fidelity level | 5 |
rtsl binding | 5 |
ribosome function | 5 |
forming oligonucleotides | 5 |
complete viral | 5 |
small fraction | 5 |
respiratory tract | 5 |
cascading bloom | 5 |
stunt virus | 5 |
check boxes | 5 |
ribosylation mediated | 5 |
mrna steady | 5 |
different protein | 5 |
using molecular | 5 |
sirt mediates | 5 |
sf helicases | 5 |
virema will | 5 |
positive chambers | 5 |
ribosome moves | 5 |
sequence bloom | 5 |
storage buffer | 5 |
model predicts | 5 |
unique sequences | 5 |
length nsp | 5 |
virus nuclear | 5 |
may explain | 5 |
different human | 5 |
muscle growth | 5 |
cpv dsrna | 5 |
cell membranes | 5 |
critical reading | 5 |
arterivirus helicase | 5 |
fold increases | 5 |
protein samples | 5 |
anticodon interactions | 5 |
one codon | 5 |
containing reads | 5 |
conserved protein | 5 |
significantly higher | 5 |
dna sequences | 5 |
sequence variability | 5 |
eukaryotic pathogen | 5 |
clinically relevant | 5 |
type culture | 5 |
tumor cells | 5 |
synthesis activities | 5 |
previous study | 5 |
low levels | 5 |
lower panel | 5 |
assay performance | 5 |
imino protons | 5 |
single molecule | 5 |
frameshift events | 5 |
based alignment | 5 |
ec numbers | 5 |
maximal frameshifting | 5 |
complete medium | 5 |
genome capture | 5 |
control sequences | 5 |
downstream mrna | 5 |
specific background | 5 |
transcriptional regulatory | 5 |
eukaryotic rna | 5 |
first identified | 5 |
multiple copies | 5 |
loop size | 5 |
pfam database | 5 |
phosphorylated ends | 5 |
kda polypeptide | 5 |
strongly suggests | 5 |
asymmetric unit | 5 |
form stable | 5 |
well defined | 5 |
restriction endonuclease | 5 |
intact rna | 5 |
different time | 5 |
sequences may | 5 |
first position | 5 |
analyses revealed | 5 |
nearest neighbor | 5 |
gkl sha | 5 |
target recognition | 5 |
total frameshift | 5 |
nuca family | 5 |
transfection reagent | 5 |
binding activities | 5 |
strongly suggest | 5 |
capsid shell | 5 |
somatic mutations | 5 |
translocation step | 5 |
functional sirnas | 5 |
viruses including | 5 |
mutants defective | 5 |
rna targeting | 5 |
conformational switch | 5 |
nuclear extract | 5 |
spacer lengths | 5 |
nar gku | 5 |
probes will | 5 |
cell pellets | 5 |
negative controls | 5 |
pairwise sequence | 5 |
phylogenetically conserved | 5 |
nmr methods | 5 |
regeneration system | 5 |
bvdv ns | 5 |
terminal sequence | 5 |
viral structural | 5 |
days post | 5 |
virus strain | 5 |
nmr relaxation | 5 |
specific priming | 5 |
mrna sequence | 5 |
two species | 5 |
box binding | 5 |
pathogen detection | 5 |
entrance channel | 5 |
efficient rt | 5 |
rna ends | 5 |
genomic data | 5 |
sequencing datasets | 5 |
elution fraction | 5 |
one base | 5 |
continue translation | 5 |
novel coronavirus | 5 |
experimental studies | 5 |
bacterial genes | 5 |
newly developed | 5 |
vitro experiments | 5 |
two active | 5 |
caenorhabditis elegans | 5 |
acylation analyzed | 5 |
important roles | 5 |
skeletal muscle | 5 |
virus identification | 5 |
evidence suggests | 5 |
complementary nucleic | 5 |
experimentally tested | 5 |
gku sha | 5 |
residue mutant | 5 |
murine coronavirus | 5 |
swine fever | 5 |
result showed | 5 |
nt antiviral | 5 |
cel i | 5 |
uses two | 5 |
kda nsp | 5 |
cleavage efficiency | 5 |
i transcription | 5 |
small rnas | 5 |
key role | 5 |
mediated rna | 5 |
specific product | 5 |
vienna rna | 5 |
specific manner | 5 |
roc curve | 5 |
mode ttp | 5 |
avian infectious | 5 |
sc complete | 5 |
rna oligo | 5 |
computational tools | 5 |
square statistic | 5 |
expressed genes | 5 |
long conventional | 5 |
also shows | 5 |
rational design | 5 |
mediated regulation | 5 |
primary structure | 5 |
modified nucleosides | 5 |
ribosome pausing | 5 |
cleared lysate | 5 |
human nucleolin | 5 |
quantity one | 5 |
palm domain | 5 |
dodecyl sulphate | 5 |
upstream stop | 5 |
stimulatory elements | 5 |
dna technologies | 5 |
type madp | 5 |
lentiviral transduction | 5 |
increased rates | 5 |
frame codon | 5 |
conserved residue | 5 |
spin systems | 5 |
human cell | 5 |
local thermodynamic | 5 |
heptameric slippery | 5 |
rna biology | 5 |
amplified using | 5 |
terminal nuclease | 5 |
public databases | 5 |